BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013323
         (445 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225452280|ref|XP_002270990.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
           mitochondrial [Vitis vinifera]
 gi|296087577|emb|CBI34833.3| unnamed protein product [Vitis vinifera]
          Length = 445

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/417 (76%), Positives = 367/417 (88%), Gaps = 2/417 (0%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           ALGRR+F  +A  EEYA+RNYA+N SEY TVV+SLT+QRR FLLRD YDDMMLDGVQP+R
Sbjct: 19  ALGRRYF--AASTEEYAKRNYASNVSEYTTVVSSLTAQRRHFLLRDAYDDMMLDGVQPSR 76

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
           D+FHSLIVGTMKG+RLQD+FFF DQMK  G +PDVA+YN+L+S CGKCKNSDQAI I EE
Sbjct: 77  DIFHSLIVGTMKGARLQDSFFFIDQMKTMGLVPDVALYNFLVSTCGKCKNSDQAIHILEE 136

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           MKK EVKP GQTY+CLLNACAA+G+ D VYAIVRDMTAAG GL+KFCYAGLI AH NKIP
Sbjct: 137 MKKNEVKPTGQTYICLLNACAASGRTDRVYAIVRDMTAAGLGLNKFCYAGLIAAHKNKIP 196

Query: 197 RADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
             DDTA+KIIELVEQSKGWSS+E + + AEN MMGVS+EELYN+PTAEYVHRR GFL+R 
Sbjct: 197 LTDDTASKIIELVEQSKGWSSIEATRDMAENVMMGVSEEELYNIPTAEYVHRRAGFLNRQ 256

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           LTVYHVA HA A+L++V+AMETLLEMLKK+ K+PDV+++MQ +RCYLHSG+ID G ++FE
Sbjct: 257 LTVYHVALHAFADLRNVEAMETLLEMLKKEGKTPDVFLIMQTMRCYLHSGNIDRGLQIFE 316

Query: 317 DYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAA 376
           +Y+ S K    ELY TLVEGAM GYTPKGM+LAQDTLV MN+R  FLSPRMGS+LLLVA+
Sbjct: 317 EYMNSGKPAMVELYVTLVEGAMVGYTPKGMELAQDTLVKMNARGFFLSPRMGSELLLVAS 376

Query: 377 GEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDN 433
           GEK+GGYTTANYIWDLMQARKITPS PAVEAYYNGL++RE+P DD RLV+VSRAYDN
Sbjct: 377 GEKTGGYTTANYIWDLMQARKITPSFPAVEAYYNGLREREIPEDDARLVLVSRAYDN 433


>gi|255572062|ref|XP_002526972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533724|gb|EEF35459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 510

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/426 (73%), Positives = 362/426 (84%), Gaps = 1/426 (0%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           LGR +   ++   EY +RNYA+N SEYNTVV SL +QRR FLLR+VYDDMMLDGVQP+R+
Sbjct: 60  LGRHYSAAASSTAEYDKRNYASNLSEYNTVVGSLIAQRRHFLLREVYDDMMLDGVQPSRE 119

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            F+SLIVGT+KG+RL D FFFRDQMKA G LPDV++YN+LIS CGKCKNSDQA++I EEM
Sbjct: 120 TFYSLIVGTLKGARLSDAFFFRDQMKAMGLLPDVSLYNFLISTCGKCKNSDQAVQILEEM 179

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
           K  EVKPNGQTYVCLLNACAAAG+LD VYAIVRDMTAAGAGL+KFCYAGLI AH NK P 
Sbjct: 180 KINEVKPNGQTYVCLLNACAAAGRLDRVYAIVRDMTAAGAGLNKFCYAGLIAAHMNKKPL 239

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL 257
           +DDTA +IIELVEQSKGWSSVE+S  NAEN MMG+S+EEL+NLPTA+Y HRRG F+ + L
Sbjct: 240 SDDTAKRIIELVEQSKGWSSVESSNYNAENVMMGISEEELFNLPTADYAHRRGAFIIKPL 299

Query: 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           TVYH AFHACAEL++V+A++TLLEMLKKD  SPDV+I MQ +RCYLHSGDID+G K+FE+
Sbjct: 300 TVYHAAFHACAELRNVEAIQTLLEMLKKDGNSPDVFITMQVMRCYLHSGDIDSGLKIFEE 359

Query: 318 YICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAG 377
           Y+ S K    ELY TLVEGAM GYTPKGMQLAQDTLV M SRN+ L  R G+DLLL+AAG
Sbjct: 360 YMKSGKISGIELYTTLVEGAMVGYTPKGMQLAQDTLVMMGSRNLSLGLRQGNDLLLMAAG 419

Query: 378 EKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLRG 437
           EK+GGYTTANYIWDLM+ARK TPSL AVEAYYNGLK+RE+P DDPRL+ VSR YDN LR 
Sbjct: 420 EKTGGYTTANYIWDLMRARKFTPSLQAVEAYYNGLKEREIPEDDPRLLEVSRIYDN-LRV 478

Query: 438 RPGAVR 443
           R G  R
Sbjct: 479 RFGGGR 484


>gi|449446722|ref|XP_004141120.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
           mitochondrial-like [Cucumis sativus]
 gi|449489492|ref|XP_004158328.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
           mitochondrial-like [Cucumis sativus]
          Length = 442

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/435 (68%), Positives = 358/435 (82%), Gaps = 3/435 (0%)

Query: 1   MRLLQSIYRHHKSVGGALG-RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFL 59
           M+LLQS+    +S+   LG RR F  S   EEY +RNYA+N +EY TV+ SLT+QRR+F 
Sbjct: 1   MKLLQSLAGQSRSLVRFLGQRRSFAVST--EEYRKRNYADNVAEYKTVIASLTAQRRYFS 58

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           L DVYDDMMLDGVQPT D+FH LI GTMKG+R Q  FFFRD+MKA G +PDV++YN LIS
Sbjct: 59  LTDVYDDMMLDGVQPTMDVFHLLISGTMKGARFQHAFFFRDEMKAMGLIPDVSLYNMLIS 118

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           +CGKC NS++A+RI +EM++YEVKPN QTY+CLLNACAAAG+LD VY IVRDMT+AG GL
Sbjct: 119 LCGKCNNSEEAVRILDEMRRYEVKPNSQTYICLLNACAAAGRLDRVYTIVRDMTSAGLGL 178

Query: 180 DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYN 239
           +KFCYAGLI AH NK P ADD  TK++E VE+SK W SV+ S   AEN MMGVS+EELYN
Sbjct: 179 NKFCYAGLIAAHMNKKPVADDFDTKVVEFVERSKEWLSVDASSVTAENFMMGVSEEELYN 238

Query: 240 LPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
           +PTAEYVHRRGGFL++ LT+YHVA +ACA LK+V+ MET+++MLKKD K+PDVY++MQ +
Sbjct: 239 IPTAEYVHRRGGFLNKQLTIYHVALNACANLKNVKVMETIMDMLKKDGKTPDVYMIMQVM 298

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSR 359
           RCYLHSGDID GHK FE+++ S      ELY TLVEGAM GYTPKGMQLAQ+TL NMNSR
Sbjct: 299 RCYLHSGDIDRGHKAFEEHLNSGGSIAPELYTTLVEGAMIGYTPKGMQLAQETLENMNSR 358

Query: 360 NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPA 419
             FL+PR GS+LLL AAGEK+GGYTTANYIWDL++AR+ITP  PAV+AYY GLK RE+P 
Sbjct: 359 GFFLNPRSGSELLLAAAGEKTGGYTTANYIWDLLRAREITPLFPAVDAYYKGLKKREIPE 418

Query: 420 DDPRLVVVSRAYDNL 434
           DDPRLV+V+R ++NL
Sbjct: 419 DDPRLVLVTRIHENL 433


>gi|356570223|ref|XP_003553289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
           mitochondrial-like [Glycine max]
          Length = 450

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/440 (67%), Positives = 350/440 (79%), Gaps = 8/440 (1%)

Query: 1   MRLLQSIYRHHK--SVGGALGR----RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQ 54
           M+ LQS+    +  +  G+L R    RFF  S   EEY++RNYANN +EYNTV+ SLT+Q
Sbjct: 1   MKFLQSLIAQSRYAARAGSLNRVSGLRFF--SVSTEEYSKRNYANNVAEYNTVLGSLTAQ 58

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           RR FLLRDVYDDMMLDGV+PTRD FHSL VGTMK +R+QD F+F DQMK  G LPDV +Y
Sbjct: 59  RRNFLLRDVYDDMMLDGVKPTRDTFHSLAVGTMKAARMQDAFYFADQMKIMGLLPDVTLY 118

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N+LIS CGKCKNS++AI+I EEMK  EVKPN QTY+CLLNACAA G++D VYAIVRDMTA
Sbjct: 119 NFLISTCGKCKNSNKAIQILEEMKCMEVKPNIQTYICLLNACAADGRIDRVYAIVRDMTA 178

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
           AG GL++FCYAGLI AH NK P  DD A K+IE VE+SK WSSVET+  NAEN MMGVS 
Sbjct: 179 AGLGLNEFCYAGLIVAHKNKTPLPDDFAAKVIEFVERSKMWSSVETNSANAENVMMGVSD 238

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           EELY+LPTAEY HRRGGF+ R  T YH AFHA A+LK+V+  +TLLEML K  K+PD++I
Sbjct: 239 EELYSLPTAEYAHRRGGFVVRQFTAYHTAFHAAADLKNVELTDTLLEMLNKQGKTPDIFI 298

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV 354
           +MQ IRCY H+GDI+ G + FE+++  ++  PAEL+ TL EGAM GYT KGMQ+AQD LV
Sbjct: 299 LMQVIRCYCHAGDIERGLQNFENHLRQDRSVPAELFVTLAEGAMVGYTEKGMQMAQDILV 358

Query: 355 NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            MN RNIFL+ ++GS+LL  AAGEK+GGY TANYIWDLMQAR ITPS PAVEAYY GLKD
Sbjct: 359 RMNERNIFLNNKLGSELLFTAAGEKTGGYITANYIWDLMQARGITPSFPAVEAYYQGLKD 418

Query: 415 REVPADDPRLVVVSRAYDNL 434
           RE+P DDPRLV+VSR + NL
Sbjct: 419 REIPEDDPRLVLVSRIHKNL 438


>gi|356512038|ref|XP_003524728.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
           mitochondrial-like [Glycine max]
          Length = 450

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 290/440 (65%), Positives = 350/440 (79%), Gaps = 8/440 (1%)

Query: 1   MRLLQSIYRHHK------SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQ 54
           M+ LQS+    +       +    G RFF  S   EEY++RNYANN +EYNTV+ SLT+Q
Sbjct: 1   MKFLQSLIAQSRYAARTRPLNRVSGLRFF--SVSTEEYSKRNYANNVAEYNTVLGSLTAQ 58

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           RR FLLRDVYDDMMLDGV+PTRD FHSL+VGTMKG+R+QD F+F +QMK  G LPDV +Y
Sbjct: 59  RRNFLLRDVYDDMMLDGVKPTRDTFHSLVVGTMKGARMQDAFYFVEQMKIMGLLPDVTLY 118

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N+LIS CGKCKNS++AI+I EEMK  EVKPN QTY+CLLNACAA G++D VYAIVRDMTA
Sbjct: 119 NFLISTCGKCKNSNKAIQILEEMKCMEVKPNIQTYICLLNACAADGRIDRVYAIVRDMTA 178

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
           AG GL++FCYAGLI AH NK P  DD A K+IE VE+SK WSSVET+  NAEN MMGV+ 
Sbjct: 179 AGLGLNEFCYAGLIVAHKNKKPLPDDFAAKVIEFVERSKMWSSVETNSANAENVMMGVTD 238

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           EELYNLPTAEY HRRGGFL R  T YH AFHA A+LK+V+  +TLL+ML K  K+PD++I
Sbjct: 239 EELYNLPTAEYAHRRGGFLVRQFTAYHTAFHAAADLKNVELTDTLLDMLNKKGKTPDLFI 298

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV 354
           +MQ IRCY H+GDI+ G + FE+++  ++   +EL+ TL EGAM GYT KGMQ+AQD LV
Sbjct: 299 LMQVIRCYCHAGDIERGLQTFENHLRLDRPVASELFVTLAEGAMIGYTEKGMQMAQDVLV 358

Query: 355 NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            MN RNIF++ ++GS+LL VAAGEK+GGYTTANYIWD+M+AR ITPS PAVEAYY GLKD
Sbjct: 359 RMNERNIFVNNKLGSELLFVAAGEKTGGYTTANYIWDMMRARGITPSFPAVEAYYQGLKD 418

Query: 415 REVPADDPRLVVVSRAYDNL 434
           RE+P DDPRLV+VS  Y+NL
Sbjct: 419 REIPEDDPRLVLVSGIYNNL 438


>gi|21593882|gb|AAM65849.1| unknown [Arabidopsis thaliana]
          Length = 444

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/441 (65%), Positives = 354/441 (80%), Gaps = 5/441 (1%)

Query: 3   LLQSIYRHHKSVGGAL-GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
           L+QSI   ++S+  AL  RR+F +S   EE A+RNYAN+ SEYNT V S+T+QRR +LLR
Sbjct: 4   LMQSISGRNRSLVRALVSRRYFASSP--EEIAKRNYANDLSEYNTAVNSVTAQRRHYLLR 61

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DVYDDM LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G  PDV +YN+LIS C
Sbjct: 62  DVYDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTC 121

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GKCKN  +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++
Sbjct: 122 GKCKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQ 181

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
           FCYAGLITAH NK PR D+ +TKI+E VEQSKGWS++++S  +AE+ M  +S+EELYN+P
Sbjct: 182 FCYAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIP 241

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
           TA+Y H R  FL R LTVYHVAF A A+LKDV+A E LLEMLKKD K  D Y V+Q +RC
Sbjct: 242 TADYSH-RTRFLQRNLTVYHVAFSALADLKDVKATEALLEMLKKDGKDTDTYCVLQIMRC 300

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
           YLHS D +NG K+F+DY+ ++K P  ELY TL+EGAM GYT  GM++AQDTL+ MN RN 
Sbjct: 301 YLHSQDFENGLKLFQDYMSADKIPAMELYTTLIEGAMTGYTDNGMKIAQDTLIQMNERNF 360

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADD 421
           FL PR GS+LLL AAGEK+GGYT AN IWDLM AR I P+L AVEAYY GLK+RE+P DD
Sbjct: 361 FLDPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARNILPTLAAVEAYYKGLKEREIPEDD 420

Query: 422 PRLVVVSRAYDNLLRGRPGAV 442
           PRL++V+R Y+N LR R G +
Sbjct: 421 PRLMLVTRTYNN-LRLREGTL 440


>gi|18419731|ref|NP_567990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75248494|sp|Q8VYR5.1|PP351_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35850, mitochondrial; Flags: Precursor
 gi|17979139|gb|AAL49827.1| unknown protein [Arabidopsis thaliana]
 gi|20259115|gb|AAM14273.1| unknown protein [Arabidopsis thaliana]
 gi|332661180|gb|AEE86580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 444

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/441 (65%), Positives = 354/441 (80%), Gaps = 5/441 (1%)

Query: 3   LLQSIYRHHKSVGGAL-GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
           L+QSI   ++S+  AL  RR+F +S   EE A+RNYAN+ SEYNT V S+T+QRR +LLR
Sbjct: 4   LMQSISGRNRSLVRALVSRRYFASSP--EEIAKRNYANDLSEYNTAVNSVTAQRRHYLLR 61

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DVYDDM LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G  PDV +YN+LIS C
Sbjct: 62  DVYDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTC 121

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GKCKN  +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++
Sbjct: 122 GKCKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQ 181

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
           FCYAGLITAH NK PR D+ +TKI+E VEQSKGWS++++S  +AE+ M  +S+EELYN+P
Sbjct: 182 FCYAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIP 241

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
           TA+Y H R  FL R LTVYHVAF A A+LKDV+A E LLEMLKKD K  D Y ++Q +RC
Sbjct: 242 TADYSH-RTRFLQRNLTVYHVAFSALADLKDVKATEALLEMLKKDGKDTDTYCMLQIMRC 300

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
           YLHS D +NG K+F+DY+ ++K P  ELY TL+EGAM GYT  GM++AQDTL+ MN RN 
Sbjct: 301 YLHSQDFENGLKLFQDYMSADKIPAMELYTTLIEGAMTGYTDNGMKIAQDTLIQMNERNF 360

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADD 421
           FL PR GS+LLL AAGEK+GGYT AN IWDLM AR I P+L AVEAYY GLK+RE+P DD
Sbjct: 361 FLDPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARNILPTLAAVEAYYKGLKEREIPEDD 420

Query: 422 PRLVVVSRAYDNLLRGRPGAV 442
           PRL++V+R Y+N LR R G +
Sbjct: 421 PRLMLVTRTYNN-LRLREGTL 440


>gi|297802344|ref|XP_002869056.1| hypothetical protein ARALYDRAFT_912780 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314892|gb|EFH45315.1| hypothetical protein ARALYDRAFT_912780 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 444

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/433 (66%), Positives = 350/433 (80%), Gaps = 4/433 (0%)

Query: 3   LLQSIYRHHKSVGGAL-GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
           L+QSI   ++S+  AL  RR+F +S   EE A++NYAN+ SEYNT V S+T+QRR +LLR
Sbjct: 4   LIQSISGRNRSLVRALVSRRYFASSP--EELAKKNYANDLSEYNTAVHSVTAQRRHYLLR 61

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DVYDDM LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G  PDV +YN+LIS C
Sbjct: 62  DVYDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTC 121

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GKCKN  +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++
Sbjct: 122 GKCKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQ 181

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
           FCYAGLITAH NK PR D+ +TKI+E VEQSKGWS++++S  +AE+ M  +S+EELYN+P
Sbjct: 182 FCYAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIP 241

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
           TA+Y H R  FL R LTVYHVAF A A++KDV+A E LLEMLKKD K  D Y V+Q +RC
Sbjct: 242 TADYAH-RTRFLQRNLTVYHVAFSALADIKDVKATEALLEMLKKDGKDTDTYCVLQIMRC 300

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
           YLHS D +NG KVFEDY+ ++K P  ELY TL+EGAM G+T  GM++AQDTLV MN RN 
Sbjct: 301 YLHSQDFENGLKVFEDYMSADKIPAMELYTTLIEGAMTGHTDNGMKIAQDTLVKMNERNF 360

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADD 421
           FL PR GS+LLL AAGEK+GGYT AN IWDLM AR I P+L AVEAYY GLK+RE+P DD
Sbjct: 361 FLDPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARNILPTLAAVEAYYKGLKEREIPEDD 420

Query: 422 PRLVVVSRAYDNL 434
           PRL++V+R Y+NL
Sbjct: 421 PRLMLVTRTYNNL 433


>gi|3805851|emb|CAA21471.1| putative protein [Arabidopsis thaliana]
 gi|7270537|emb|CAB81494.1| putative protein [Arabidopsis thaliana]
          Length = 477

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/467 (60%), Positives = 347/467 (74%), Gaps = 37/467 (7%)

Query: 9   RHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM 68
           R+   V   + RR+F +S   EE A+RNYAN+ SEYNT V S+T+QRR +LLRDVYDDM 
Sbjct: 11  RNRSLVRALVSRRYFASSP--EEIAKRNYANDLSEYNTAVNSVTAQRRHYLLRDVYDDMK 68

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G  PDV +YN+LIS CGKCKN  
Sbjct: 69  LDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGKCKNGK 128

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++FCYAGLI
Sbjct: 129 EAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQFCYAGLI 188

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
           TAH NK PR D+ +TKI+E VEQSKGWS++++S  +AE+ M  +S+EELYN+PTA+Y HR
Sbjct: 189 TAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIPTADYSHR 248

Query: 249 RGGFLSRLLTVYHVAFHACAELKDV---------------------------------QA 275
              FL R LTVYHVAF A A+LKDV                                 QA
Sbjct: 249 -TRFLQRNLTVYHVAFSALADLKDVKIPKCPELSGNKDKDKKSQFRSLFLHLTSNSSWQA 307

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            E LLEMLKKD K  D Y ++Q +RCYLHS D +NG K+F+DY+ ++K P  ELY TL+E
Sbjct: 308 TEALLEMLKKDGKDTDTYCMLQIMRCYLHSQDFENGLKLFQDYMSADKIPAMELYTTLIE 367

Query: 336 GAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
           GAM GYT  GM++AQDTL+ MN RN FL PR GS+LLL AAGEK+GGYT AN IWDLM A
Sbjct: 368 GAMTGYTDNGMKIAQDTLIQMNERNFFLDPRTGSNLLLKAAGEKTGGYTVANMIWDLMLA 427

Query: 396 RKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLRGRPGAV 442
           R I P+L AVEAYY GLK+RE+P DDPRL++V+R Y+N LR R G +
Sbjct: 428 RNILPTLAAVEAYYKGLKEREIPEDDPRLMLVTRTYNN-LRLREGTL 473


>gi|357496963|ref|XP_003618770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493785|gb|AES74988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 444

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/440 (62%), Positives = 338/440 (76%), Gaps = 8/440 (1%)

Query: 1   MRLLQSIYRHHK------SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQ 54
           M+ LQS+    +      S+    G RF+  +  AEEY RRNYA N  EYNTV+ SL +Q
Sbjct: 1   MKFLQSLLGKTRFAVRNGSLPRVSGTRFY--NVPAEEYNRRNYAKNVQEYNTVLGSLNAQ 58

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           RR FLLRDVY+DMMLDGV+PTR+ FH+L VG+M+GSR+ D FFF+DQMK  G +PDV  Y
Sbjct: 59  RRIFLLRDVYEDMMLDGVRPTRETFHALAVGSMRGSRMHDAFFFKDQMKIMGLVPDVTFY 118

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N+LIS CGKCKNSDQA++I EEMK  EVKPN QTY+CLL+ACAA G++D V  IVRDMTA
Sbjct: 119 NFLISTCGKCKNSDQAVQILEEMKSMEVKPNVQTYICLLHACAAQGRIDRVQIIVRDMTA 178

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
           AG GL+KF YAGLI AH NK P  DD   K+IE V +SK WSSVET   NAEN M+GV+ 
Sbjct: 179 AGLGLNKFSYAGLIVAHQNKTPLTDDFDAKVIEYVGRSKNWSSVETDSANAENVMVGVTD 238

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           EELYNLPTAEYV RRGGFL+R  T YH AF+A A+ K+V+  +TLLEML+K+ K+PD+YI
Sbjct: 239 EELYNLPTAEYVTRRGGFLNRPFTAYHTAFNAAADFKNVKLTDTLLEMLEKENKTPDIYI 298

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV 354
           VMQ IRCY H+G+ID G + FED++   K   AE+Y TL EGAM GYT KGMQ++ D L 
Sbjct: 299 VMQVIRCYCHAGEIDRGLQFFEDFLALGKGNAAEIYVTLAEGAMVGYTEKGMQISIDILT 358

Query: 355 NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            MN RN F++ +MGS+LL++AAGEK+GGYT ANYIWDLM+AR I PSL AVEAYY GLKD
Sbjct: 359 RMNERNFFMNSKMGSELLIMAAGEKTGGYTNANYIWDLMRARNIYPSLAAVEAYYQGLKD 418

Query: 415 REVPADDPRLVVVSRAYDNL 434
           R++P DDPRL++V++ YDNL
Sbjct: 419 RQIPQDDPRLMLVTQMYDNL 438


>gi|115462067|ref|NP_001054633.1| Os05g0145600 [Oryza sativa Japonica Group]
 gi|51038158|gb|AAT93961.1| unknow protein [Oryza sativa Japonica Group]
 gi|51038198|gb|AAT94001.1| unkonw protein [Oryza sativa Japonica Group]
 gi|113578184|dbj|BAF16547.1| Os05g0145600 [Oryza sativa Japonica Group]
 gi|215686674|dbj|BAG88927.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630177|gb|EEE62309.1| hypothetical protein OsJ_17098 [Oryza sativa Japonica Group]
          Length = 454

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/418 (66%), Positives = 330/418 (78%), Gaps = 5/418 (1%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           +GRR   TS   EEY RRNYANN SEYNTV  SLT+QRR +LLRD YDDMMLDGVQP RD
Sbjct: 27  MGRRGVATST--EEYNRRNYANNISEYNTVFGSLTAQRRHYLLRDAYDDMMLDGVQPVRD 84

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            FH+LIVG MKGSRLQD F+FRDQMK  G  PDV +YN+LIS CGK KNSD AI + EEM
Sbjct: 85  TFHNLIVGAMKGSRLQDAFYFRDQMKEMGLQPDVNLYNFLISTCGKSKNSDAAIMLLEEM 144

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
           K + VK  G+TY CLLNA AA G+ D VYAIVRDMTAAG GL+KFCYAGLITA  NK P 
Sbjct: 145 KAHGVKLKGETYTCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPT 204

Query: 198 ADDTATKIIELVEQSKGWSSVE-TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
            ++T TKI+E V+QSKGW +VE  S +++EN MM VS+EELYNLPTAEYVHR+  F+ + 
Sbjct: 205 TEETMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQ-AFVYKQ 263

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           +T+YHVA HACA+LK  + +E LL+ML KD  + D +I MQ +RCYL  GDID+  K+FE
Sbjct: 264 MTIYHVAIHACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFE 323

Query: 317 DYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAA 376
           +Y  S K PPAELY TL EGAM G+TP+GMQLAQ+T+  M SRN FL+ RMG+DLLL A+
Sbjct: 324 EY-TSSKSPPAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAAS 382

Query: 377 GEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNL 434
           GEK+GGYT ANY+WDLMQ R+ITPSLPAVEAYY GLK+RE+P+DDPRL+ VSR  DNL
Sbjct: 383 GEKTGGYTIANYVWDLMQNRRITPSLPAVEAYYKGLKEREIPSDDPRLMNVSRVLDNL 440


>gi|357134694|ref|XP_003568951.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
           mitochondrial-like [Brachypodium distachyon]
          Length = 452

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/443 (63%), Positives = 338/443 (76%), Gaps = 10/443 (2%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRF----F 58
           LLQ   RH  +    +GRR   TS   EEY RRNYANN SEYNTV+ SL  QRR     +
Sbjct: 9   LLQGQLRHATAAAAGVGRRGVATST--EEYMRRNYANNVSEYNTVIGSLVQQRRHVSGPY 66

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           LLRD YDDM+LDGVQP RD FH+LIVGTMKGSR+QD F+FRDQM+  G  PDV +YN+LI
Sbjct: 67  LLRDAYDDMILDGVQPVRDTFHNLIVGTMKGSRMQDAFYFRDQMREMGLQPDVNLYNFLI 126

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
           S CGKC+NSD AI + EEMK + VK  G+TY+CLLNA AA G+ D VYAIVRDMTAAG G
Sbjct: 127 STCGKCQNSDAAILLLEEMKAHGVKLKGETYICLLNALAATGRTDQVYAIVRDMTAAGLG 186

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-AENEMMGVSKEEL 237
           L+KFCYAGLITA  NK P ++DT  KI+E V+QSKGW  VE   N+ AEN MM VS+EEL
Sbjct: 187 LNKFCYAGLITAFKNKTPTSEDTTAKILEFVQQSKGWQYVERVANDSAENIMMNVSEEEL 246

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
           YNLPTAEY HRR GF+ + LT+YHVA HACA+L+  + +E LL+ML KD  + D +IVM 
Sbjct: 247 YNLPTAEYAHRR-GFIFKQLTIYHVAVHACADLRSKETLEALLDMLTKDGFTNDAFIVMH 305

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357
            +RCYL  GDID+  K+FE++  S K  PAELY  L EGAM GYTP+GMQLAQ+TL  M 
Sbjct: 306 AVRCYLRCGDIDSAVKMFEEF-SSSKPTPAELYVKLAEGAMIGYTPRGMQLAQETLEKMT 364

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREV 417
            RN+FL+P+MG+DLLL A+GEK+GGYTTANYIWDL+QARKI P+LPAVEAY+ GLK+RE+
Sbjct: 365 KRNLFLNPKMGTDLLLAASGEKTGGYTTANYIWDLLQARKIIPALPAVEAYHKGLKEREI 424

Query: 418 PADDPRLVVVSRAYDNL-LRGRP 439
           P+DDPRL+ V+   DNL LR  P
Sbjct: 425 PSDDPRLLNVAHTLDNLQLRFGP 447


>gi|218196081|gb|EEC78508.1| hypothetical protein OsI_18438 [Oryza sativa Indica Group]
          Length = 454

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/418 (66%), Positives = 330/418 (78%), Gaps = 5/418 (1%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           +GRR   TS   EEY RRNYA N SEYNTV  SLT+QRR +LLRD YDDMMLDGVQP RD
Sbjct: 27  MGRRGVATST--EEYNRRNYAKNISEYNTVFGSLTAQRRHYLLRDAYDDMMLDGVQPVRD 84

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            FH+LIVG MKGSRLQD F+FRDQMK  G  PDV +YN+LIS CGK KNSD AI + EEM
Sbjct: 85  TFHNLIVGAMKGSRLQDAFYFRDQMKEMGLQPDVNLYNFLISTCGKSKNSDAAIMLLEEM 144

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
           K + VK  G+TYVCLLNA AA G+ D VYAIVRDMTAAG GL+KFCYAGLITA  NK P 
Sbjct: 145 KAHGVKLKGETYVCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPT 204

Query: 198 ADDTATKIIELVEQSKGWSSVE-TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
            ++T TKI+E V+QSKGW +VE  S +++EN MM VS+EELYNLPTAEYVHR+  F+ + 
Sbjct: 205 TEETMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQ-AFVYKQ 263

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           +T+YHVA HACA+LK  + +E LL+ML KD  + D +I MQ +RCYL  GDID+  K+FE
Sbjct: 264 MTIYHVAIHACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFE 323

Query: 317 DYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAA 376
           +Y  S K PPAELY TL EGAM G+TP+GMQLAQ+T+  M SRN FL+ RMG+DLLL A+
Sbjct: 324 EY-TSSKSPPAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAAS 382

Query: 377 GEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNL 434
           GEK+GGYT ANY+WDLMQ R+ITPSLPAVEAYY GLK+RE+P+DDPRL+ VSR  DNL
Sbjct: 383 GEKTGGYTIANYVWDLMQNRRITPSLPAVEAYYKGLKEREIPSDDPRLMNVSRVLDNL 440


>gi|413950001|gb|AFW82650.1| hypothetical protein ZEAMMB73_779751 [Zea mays]
          Length = 450

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 274/415 (66%), Positives = 328/415 (79%), Gaps = 6/415 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EEYARRNYA+N SEYNTV+ SL +QRR +LLRD YDDMMLDGV+P R+ FH+LIVGTMKG
Sbjct: 32  EEYARRNYADNNSEYNTVIGSLVAQRRPYLLRDAYDDMMLDGVKPERETFHTLIVGTMKG 91

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           SRLQD  +FRDQMK  G  PDV +YN+LIS CGKCKNSD AI + EEMK ++VK  G+TY
Sbjct: 92  SRLQDALYFRDQMKEMGLKPDVNLYNFLISTCGKCKNSDAAIMLLEEMKAHDVKLKGETY 151

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           +CLLNA A+ GQ D VYAIV DM+AAG GL+KFCYAGLITA  NK P A++T  KI++ V
Sbjct: 152 ICLLNALASTGQTDQVYAIVSDMSAAGLGLNKFCYAGLITAFKNKTPTAEETMAKILDFV 211

Query: 210 EQSKGWSSVE-TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
            QSKGW  VE  S + AEN MM VS+EELYNLPTAEYV+RRGGF+ +  TVYHVA  ACA
Sbjct: 212 GQSKGWQYVERVSKDIAENIMMNVSEEELYNLPTAEYVNRRGGFVFKQHTVYHVALQACA 271

Query: 269 ELKDVQAMETLLEMLKKDRK---SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
           EL+  + +E LLEM  KD +   + D Y+VMQ +RCYL  GDID+  K+FE+Y  S + P
Sbjct: 272 ELRSKETLEALLEMFNKDNRDGSTYDAYMVMQAMRCYLRCGDIDSAVKMFEEY-SSSRSP 330

Query: 326 PAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTT 385
           PAELYATL EGAM GYTP+GMQLAQ+T+  M SRN FL+ +MG+DLLL AAGE +GGYTT
Sbjct: 331 PAELYATLAEGAMIGYTPRGMQLAQETIEKMTSRNFFLNAKMGTDLLLAAAGETAGGYTT 390

Query: 386 ANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNL-LRGRP 439
           ANY+WDL+Q+RKITP+LPAVEAY+ GL  RE+P+DDPRL+ V+R  DNL LR  P
Sbjct: 391 ANYVWDLLQSRKITPTLPAVEAYHKGLTAREIPSDDPRLLNVTRVLDNLKLRFGP 445


>gi|242089505|ref|XP_002440585.1| hypothetical protein SORBIDRAFT_09g003510 [Sorghum bicolor]
 gi|241945870|gb|EES19015.1| hypothetical protein SORBIDRAFT_09g003510 [Sorghum bicolor]
          Length = 452

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/442 (62%), Positives = 334/442 (75%), Gaps = 8/442 (1%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +LQ   RH  +      RR   T+   EEYARRNYA+N SEYNTV+ SL +QRR +LLRD
Sbjct: 9   VLQGRLRHAAAAALFTARRGAATAT--EEYARRNYADNTSEYNTVIGSLVAQRRPYLLRD 66

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
            YDDMMLDGV+P RD FH+LIVGTMKGSRLQD  +FRDQMK  G  PDV +YN+LIS CG
Sbjct: 67  AYDDMMLDGVKPERDTFHTLIVGTMKGSRLQDALYFRDQMKEMGLQPDVNLYNFLISTCG 126

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           KCKNSD AI + EEMK + VK  G+TY+CLLNA A+ GQ D VYAIV DM+AAG GL+KF
Sbjct: 127 KCKNSDAAIMLLEEMKAHGVKLKGETYICLLNALASTGQTDQVYAIVSDMSAAGLGLNKF 186

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG-NNAENEMMGVSKEELYNLP 241
           CYAGLITA  NK P  ++T  KI++ V QSKGW  VE +  ++AEN MM VS+EELYNLP
Sbjct: 187 CYAGLITAFKNKTPTTEETMAKILDFVGQSKGWQYVERAAKDSAENIMMNVSEEELYNLP 246

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK---SPDVYIVMQN 298
           TAEYV+RRGGF+ +  TVYHVA HACAEL+  + +E LLEM  KD +   + D Y+VMQ 
Sbjct: 247 TAEYVNRRGGFVFKQHTVYHVAIHACAELRSKETLEALLEMFNKDNRDGSTYDAYMVMQA 306

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNS 358
           +RCYL  GD D+  K+FE+Y+ S + PP ELYATL EGAM GYTP+GMQLAQ+T+  M S
Sbjct: 307 MRCYLRCGDFDSAVKMFEEYL-SSRSPPVELYATLAEGAMIGYTPRGMQLAQETIEKMVS 365

Query: 359 RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418
           RN FL+ R+GSDLLL AAGE +GGYTTANY+WDL+Q+R +TP L AVEAY+ GL  RE+P
Sbjct: 366 RNFFLNARLGSDLLLAAAGETTGGYTTANYVWDLLQSRNVTPYLTAVEAYHKGLMAREIP 425

Query: 419 ADDPRLVVVSRAYDNL-LRGRP 439
           +DDPRL+ VSR  DNL LR  P
Sbjct: 426 SDDPRLLNVSRVLDNLQLRFGP 447


>gi|226531670|ref|NP_001146671.1| uncharacterized protein LOC100280271 [Zea mays]
 gi|219888249|gb|ACL54499.1| unknown [Zea mays]
 gi|413950002|gb|AFW82651.1| hypothetical protein ZEAMMB73_779751 [Zea mays]
          Length = 382

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/378 (65%), Positives = 296/378 (78%), Gaps = 6/378 (1%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           MMLDGV+P R+ FH+LIVGTMKGSRLQD  +FRDQMK  G  PDV +YN+LIS CGKCKN
Sbjct: 1   MMLDGVKPERETFHTLIVGTMKGSRLQDALYFRDQMKEMGLKPDVNLYNFLISTCGKCKN 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
           SD AI + EEMK ++VK  G+TY+CLLNA A+ GQ D VYAIV DM+AAG GL+KFCYAG
Sbjct: 61  SDAAIMLLEEMKAHDVKLKGETYICLLNALASTGQTDQVYAIVSDMSAAGLGLNKFCYAG 120

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVE-TSGNNAENEMMGVSKEELYNLPTAEY 245
           LITA  NK P A++T  KI++ V QSKGW  VE  S + AEN MM VS+EELYNLPTAEY
Sbjct: 121 LITAFKNKTPTAEETMAKILDFVGQSKGWQYVERVSKDIAENIMMNVSEEELYNLPTAEY 180

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK---SPDVYIVMQNIRCY 302
           V+RRGGF+ +  TVYHVA  ACAEL+  + +E LLEM  KD +   + D Y+VMQ +RCY
Sbjct: 181 VNRRGGFVFKQHTVYHVALQACAELRSKETLEALLEMFNKDNRDGSTYDAYMVMQAMRCY 240

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF 362
           L  GDID+  K+FE+Y  S + PPAELYATL EGAM GYTP+GMQLAQ+T+  M SRN F
Sbjct: 241 LRCGDIDSAVKMFEEY-SSSRSPPAELYATLAEGAMIGYTPRGMQLAQETIEKMTSRNFF 299

Query: 363 LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDP 422
           L+ +MG+DLLL AAGE +GGYTTANY+WDL+Q+RKITP+LPAVEAY+ GL  RE+P+DDP
Sbjct: 300 LNAKMGTDLLLAAAGETAGGYTTANYVWDLLQSRKITPTLPAVEAYHKGLTAREIPSDDP 359

Query: 423 RLVVVSRAYDNL-LRGRP 439
           RL+ V+R  DNL LR  P
Sbjct: 360 RLLNVTRVLDNLKLRFGP 377


>gi|224055603|ref|XP_002298561.1| predicted protein [Populus trichocarpa]
 gi|222845819|gb|EEE83366.1| predicted protein [Populus trichocarpa]
          Length = 300

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/291 (72%), Positives = 243/291 (83%), Gaps = 3/291 (1%)

Query: 11  HKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
            +S+    GRR+  TS   E+YA+RNYANN SEYNTV TSLT++RR +LLRD YDDM+LD
Sbjct: 9   QRSLLRGFGRRYLATST--EQYAKRNYANNLSEYNTVFTSLTAKRRHYLLRDAYDDMVLD 66

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GVQP+RD FHSLI GTMKGSRLQD F+FRD+MK  G LPDV +YN+LIS CGK KNSDQA
Sbjct: 67  GVQPSRDTFHSLIAGTMKGSRLQDAFYFRDEMKTMGLLPDVVLYNFLISTCGKSKNSDQA 126

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           I+I +EMK   VKPNGQTY+CLLN CAAAG+LDPVYAIVRDMT+AG GL+KFCYAGLI A
Sbjct: 127 IKILDEMKNSGVKPNGQTYICLLNECAAAGRLDPVYAIVRDMTSAGVGLNKFCYAGLIAA 186

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETS-GNNAENEMMGVSKEELYNLPTAEYVHRR 249
           H NK P A+D ATKIIELVEQSKGWSSVE S G NAEN MM VS+EELYNLPTA+YVH+R
Sbjct: 187 HKNKTPIAEDVATKIIELVEQSKGWSSVEASTGENAENVMMNVSEEELYNLPTADYVHKR 246

Query: 250 GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
            GFL + LTVYHVAFHA  ELK+VQAME L+EMLK ++K PDV+I++Q +R
Sbjct: 247 RGFLRKELTVYHVAFHAFTELKNVQAMEVLVEMLKSEKKDPDVFILLQIMR 297


>gi|302795769|ref|XP_002979647.1| hypothetical protein SELMODRAFT_271393 [Selaginella moellendorffii]
 gi|302807285|ref|XP_002985355.1| hypothetical protein SELMODRAFT_157280 [Selaginella moellendorffii]
 gi|300146818|gb|EFJ13485.1| hypothetical protein SELMODRAFT_157280 [Selaginella moellendorffii]
 gi|300152407|gb|EFJ19049.1| hypothetical protein SELMODRAFT_271393 [Selaginella moellendorffii]
          Length = 495

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 252/417 (60%), Gaps = 7/417 (1%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G  GR +   S  A       YAN+   YN  + +L  +RR +LLRDVYD+M++DGVQP 
Sbjct: 39  GTTGRCYATASVAAVN----TYANDLDSYNKALQTLNFKRRHYLLRDVYDEMLVDGVQPG 94

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
              FH L+ G MKGSRLQDT FF +QM+  G +PDVA Y+ +I+ CGKC    +A R+ E
Sbjct: 95  PATFHLLLSGCMKGSRLQDTMFFFEQMRTMGIIPDVATYSLVIAACGKCNQLSRAFRVGE 154

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
           EM+   V+P  +T+V LL+AC  AG  D  + I+R MT  G   +++CY+ LI A+ N+ 
Sbjct: 155 EMEASGVQPKLETFVALLSACGVAGDTDKAFEILRRMTTYGITFNEYCYSALIAAYKNRK 214

Query: 196 PRADDTATKIIELVEQSKGWSSVETSGNNA--ENEMMGVSKEELYNLPTAEYVHRRGGFL 253
           P   DT  KI E+V++SK  +S +     A  E E+    ++E  +L T E   RRG F 
Sbjct: 215 PIQPDTFDKIYEIVKKSKALASEDLRARAATGEAEISTDLQDEFCSLITGEGQMRRGAFN 274

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
            R+L VYH A  A A+LK+++ ++ + EM+  DR  PD + V Q IR Y+ +GD ++  +
Sbjct: 275 RRML-VYHSALRAAADLKNLEGLKKICEMMVTDRLFPDAFCVSQLIRGYVAAGDTESALE 333

Query: 314 VFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLL 373
            F  +I S +    +LY  +++GAM  YTP GM  A+  L  +  +  +L+P++GSD+L 
Sbjct: 334 CFNKHINSGRPVNLDLYMVMIQGAMTNYTPAGMTTAKKLLRQLEEKGFYLNPKVGSDMLA 393

Query: 374 VAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRA 430
            A+ E  G +TTAN IWD+M  + + P+  A +AY +GL+ RE+P DDPR+  V  A
Sbjct: 394 FASKEPEGDFTTANLIWDMMMRKSLRPTRLASQAYLDGLQGREIPDDDPRIASVKAA 450


>gi|168065179|ref|XP_001784532.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663913|gb|EDQ50653.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/417 (39%), Positives = 239/417 (57%), Gaps = 14/417 (3%)

Query: 11  HKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           H+    A G R + T   A  +A RNYAN+  EYN V+  L   +R +L+RDVY+DM LD
Sbjct: 43  HRDDQAAFGVRCYSTGQNAAVHAMRNYANSIYEYNKVLDELNYSKRSYLMRDVYEDMQLD 102

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV+P R+ FH+LI G MK  RLQD  +F D+MKA G  PD+ +YN +IS CG+    ++A
Sbjct: 103 GVRPIRNTFHTLITGCMKSQRLQDAVYFFDEMKAMGLQPDIVLYNCIISTCGQANQIERA 162

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            ++  EM+   +KP  +T++ LLNAC  AG         R M A G  L+  CYA LI A
Sbjct: 163 FQVAAEMEATGIKPTDRTFLALLNACGTAG---------RRMAAYGLTLNSSCYAALIQA 213

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
           H N  P    T  KI EL+E+SKG  +V   G   ++      +EEL NL T   +    
Sbjct: 214 HKNSRPINQTTFQKIFELLEKSKGADAVAGDGEGRDD-----FEEELANLVTGGGLQPTR 268

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
            +++R L VY+ A  AC  L +++A+E ++EMLK D+   D   + + ++ Y+  G ++ 
Sbjct: 269 SYVNRRLNVYYSALRACGALGNIEAVERIIEMLKNDKHQVDATCIAELVKAYIGRGQMEK 328

Query: 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSD 370
             +V  +YI S K P   L+ TL+E  +   TP  M  A+  L  M+ +  FL+  +GS+
Sbjct: 329 AVQVMNEYIDSGKNPSLSLFVTLIERCLQQRTPANMAAARKLLDRMDEKGFFLNTAIGSN 388

Query: 371 LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVV 427
            L +A+ +  G ++TAN IWD+M  R + PS+ ++ +Y NGL  R+VP DDPRL   
Sbjct: 389 FLFLASLDMVGDFSTANTIWDMMHKRNLRPSIKSITSYSNGLHSRKVPEDDPRLAAT 445


>gi|168054019|ref|XP_001779431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669229|gb|EDQ55821.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 562

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 161/452 (35%), Positives = 252/452 (55%), Gaps = 33/452 (7%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
            R+ + TS  A  YA RNYAN   EY+ V+  L   +R +L+RDVY+DM LDGV+P R+ 
Sbjct: 56  ARQNYSTSQNAAAYASRNYANTIHEYDKVLEELNHNKRSYLMRDVYEDMQLDGVRPVRNT 115

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           FH LI G MKG RLQD  +F D+MKA G +PD+ +YN +IS CG+    ++A ++  EM+
Sbjct: 116 FHILITGCMKGQRLQDAIYFFDEMKAMGLVPDIVLYNCIISTCGQANQIERAFQVAAEME 175

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
              +KP  +T++ LLNAC  AG+++    +V+ M A G  L+  CY+ LI A  N  P  
Sbjct: 176 SNGMKPTHRTFLALLNACGTAGRVEEANGVVQRMAAFGLTLNSSCYSALIQARKNHRPIN 235

Query: 199 DDTATKIIELVEQSKGWSSVE------------------------TSGNN---AENEMMG 231
             T  K++  + +   +SS+                         + G++    E E   
Sbjct: 236 HLTFQKVMFSLLRVCVFSSIWFKRFNLPILQEHLLILVYALDLLISKGSDTLPGEGEGRD 295

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD 291
             +EEL NL T   +     F++R L VY  A  AC +L +++A+E ++ M+++D    D
Sbjct: 296 DFEEELANLVTGGGLQPTRSFVNRGLNVYQSALRACGDLGNIEAVEKIIGMMRQDNLQLD 355

Query: 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQD 351
              + + ++ Y+  G ++   +V EDYI S K P   LY TL+E  +   T   M  A+ 
Sbjct: 356 AITITELVKAYIGRGQMEKAMQVVEDYIESGKNPSLSLYITLIESCLQRRTVANMAAAKK 415

Query: 352 TLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            L  M+ R  FL+  +GS+ L +A+ + +G Y+TAN IWD+MQ R + PS+ ++ +Y +G
Sbjct: 416 LLDQMDERGFFLNTSIGSNFLYLASLDTAGDYSTANTIWDMMQKRNLRPSVKSLTSYSSG 475

Query: 412 LKDREVPADDPRLV----VVSRAY--DNLLRG 437
           L+ ++VP DDPRL     +++R    +N +RG
Sbjct: 476 LQLKKVPEDDPRLAATKDIIARVQKKNNWIRG 507


>gi|388491084|gb|AFK33608.1| unknown [Lotus japonicus]
          Length = 193

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/195 (64%), Positives = 150/195 (76%), Gaps = 10/195 (5%)

Query: 1   MRLLQSIYRHHKSV----GGALGR----RFFVTSAGAEEYARRNYANNASEYNTVVTSLT 52
           M+ LQS+  + ++     GG+LGR    RFF   A +EEY +RNYANN SEYNTV  SLT
Sbjct: 1   MKFLQSLIGNARTRFAARGGSLGRVSGVRFFC--APSEEYYKRNYANNVSEYNTVFGSLT 58

Query: 53  SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112
           +QRR FLLRD YDDMMLDGV+P RD FHSL+VGTM+GSR+QD F+F +QMK  G +PDV 
Sbjct: 59  AQRRNFLLRDAYDDMMLDGVKPNRDTFHSLVVGTMRGSRMQDAFYFLNQMKIMGLVPDVT 118

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           +YN+LIS CGK KNSDQAI+I EEMK  EVKPN +TY+CLL+ACAA G+LD V AIVRDM
Sbjct: 119 LYNFLISTCGKSKNSDQAIQILEEMKFMEVKPNVRTYICLLHACAADGRLDRVNAIVRDM 178

Query: 173 TAAGAGLDKFCYAGL 187
           TAAG GL+K    GL
Sbjct: 179 TAAGLGLNKSAMRGL 193


>gi|297802342|ref|XP_002869055.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314891|gb|EFH45314.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 224

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/251 (43%), Positives = 138/251 (54%), Gaps = 65/251 (25%)

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           LITA   +   +   + KI+E VEQSKGWS++++S  +AE+ M  +S+EELYN+PTA+Y 
Sbjct: 19  LITASHRRFSHSLLFSQKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIPTADYA 78

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
           HR                                                   RCYLHS 
Sbjct: 79  HR--------------------------------------------------TRCYLHSE 88

Query: 307 DIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV------------ 354
           D +NG K+FEDY+ ++K P  E Y T +EG M G+T  GM++AQDTLV            
Sbjct: 89  DFENGLKLFEDYMSADKIPAMEFYTTPIEGPMTGHTDNGMKIAQDTLVMFIGSSCTEKRI 148

Query: 355 ---NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
               MN RN FL PR GS+LLL AAGEK+GGY  AN IWDLM  R I P+L AVEAYY G
Sbjct: 149 DEVKMNERNFFLDPRTGSNLLLKAAGEKTGGYIVANMIWDLMLVRNILPTLAAVEAYYKG 208

Query: 412 LKDREVPADDP 422
           LK+RE+P DDP
Sbjct: 209 LKEREIPEDDP 219


>gi|414875854|tpg|DAA52985.1| TPA: hypothetical protein ZEAMMB73_849058 [Zea mays]
          Length = 342

 Score =  191 bits (484), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 119/165 (72%), Gaps = 5/165 (3%)

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE-TSGNN 224
           YAIV DM+AAG GL+KFCYAGLITA  NK P  ++T  KI++ V QSKGW  VE  S + 
Sbjct: 161 YAIVSDMSAAGLGLNKFCYAGLITAFKNKTPTTEETMAKILDFVGQSKGWQYVERVSKDI 220

Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
           AEN MM V +EELYNLPTAEYV+RRGGF+ +  TVYHVA  ACAEL+  + +E LLEM  
Sbjct: 221 AENIMMNVLEEELYNLPTAEYVNRRGGFVFKQHTVYHVALQACAELRSKETLEALLEMFN 280

Query: 285 KDRK---SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
           KD +   + D Y+VMQ +RCYL  GDID+  K+FE+Y  S + PP
Sbjct: 281 KDNRDGSTYDAYMVMQAMRCYLRCGDIDSAVKMFEEY-SSSRSPP 324


>gi|224055605|ref|XP_002298562.1| predicted protein [Populus trichocarpa]
 gi|222845820|gb|EEE83367.1| predicted protein [Populus trichocarpa]
          Length = 173

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 107/150 (71%), Gaps = 5/150 (3%)

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSR 359
           RCYL SGD+D   +VF DY+ S K    ELY  L+EGAM G+TP+GMQ+A D L  M  R
Sbjct: 11  RCYLLSGDLDRALQVFNDYMNSMKPSFIELYTVLIEGAMVGHTPRGMQIALDKLEEMTQR 70

Query: 360 NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPA 419
           + FL P++ +DLLL+AAG+K GGYTTANYIWDL QARK+  S PAVEAYYNGLK R VP 
Sbjct: 71  SFFLFPKIANDLLLIAAGDKKGGYTTANYIWDLTQARKMPLSFPAVEAYYNGLKGRCVPE 130

Query: 420 DDPRLVVVSRAYDNLLRGRPGA----VRQQ 445
           DDPR ++VS  Y+  LR R GA     RQQ
Sbjct: 131 DDPRWLLVSSTYER-LRPRSGAGTGPARQQ 159


>gi|353441162|gb|AEQ94165.1| TPR-like domain containing protein [Elaeis guineensis]
          Length = 113

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/103 (77%), Positives = 91/103 (88%)

Query: 332 TLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD 391
           TLVEGAM G+TP+GMQLAQDTL  MN+R IFL+P+MGSDLLL AAGEK GGYTTANYIWD
Sbjct: 1   TLVEGAMVGHTPQGMQLAQDTLEKMNARGIFLNPKMGSDLLLAAAGEKMGGYTTANYIWD 60

Query: 392 LMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNL 434
           L+Q+RKI PSLPAVE Y+ GLK RE+PADDPRL++VSR  DNL
Sbjct: 61  LLQSRKINPSLPAVEVYHEGLKQREIPADDPRLLMVSRTLDNL 103


>gi|294460248|gb|ADE75706.1| unknown [Picea sitchensis]
          Length = 118

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 86/116 (74%), Gaps = 4/116 (3%)

Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
           E Y TLV+GAM GYTP GM++AQDTL  M +R  FL+PR+GS+LL  A+GE  GG+TTAN
Sbjct: 2   EFYTTLVQGAMIGYTPDGMEIAQDTLQKMTARGWFLNPRIGSELLTAASGETFGGFTTAN 61

Query: 388 YIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLR----GRP 439
           YIWD +Q+R I P   AVEAYY GLK+R++P +DPRL  V+R  +NL R    GRP
Sbjct: 62  YIWDTLQSRGIVPMSSAVEAYYKGLKERDIPENDPRLSQVTRVVNNLQRRFASGRP 117


>gi|307109815|gb|EFN58052.1| hypothetical protein CHLNCDRAFT_50745 [Chlorella variabilis]
          Length = 311

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 80/141 (56%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           +V +L+ ++R +L+RDV D+M L+G++P R +  + +   MK  +L D  +F ++MK  G
Sbjct: 1   MVFALSQRKRAYLIRDVVDEMSLNGMRPDRFILQTGLFSCMKSRKLGDAMYFFEEMKRRG 60

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             PD +VY   IS CG+     +A+ + +EM    +       + LLNA A AG+L    
Sbjct: 61  MQPDSSVYGTAISACGRAGQLARAVELRDEMVARGMGMTLNIRLALLNAFAEAGRLQQTR 120

Query: 167 AIVRDMTAAGAGLDKFCYAGL 187
             + ++ AAG   ++F YAGL
Sbjct: 121 EALAELRAAGHVGNEFAYAGL 141


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 172/389 (44%), Gaps = 21/389 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+V +LT Q+ F  +  +   +  +G++P   LF+S+I    +   +++      +MK
Sbjct: 51  YTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMK 110

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P  + +N LI   G    +++A+++ E ++   VKPN +TY  L+ A      ++
Sbjct: 111 ESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENME 170

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKII-ELVEQSKGWSSVET 220
             + +V  M A+G   D   Y  L  A+  K    RA++   +++   V  ++   S+  
Sbjct: 171 EAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIV 230

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRG--GFLSRLLTVYHVAFHACAELKDVQAMET 278
           +G   E  M+  S+          +V R    G L  L  V++       +  D + ++ 
Sbjct: 231 NGYCKEGNMVDASR----------FVFRMKELGVLPNLF-VFNSLIKGFLDTMDTEGVDE 279

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
           +L +++++   PDV      +  +  +G +D   ++F D + +E  P    ++ L +G +
Sbjct: 280 VLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYV 339

Query: 339 FGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI 398
               P   + A+  L +M  R   + P +     +++    +G    A  +++ M    +
Sbjct: 340 RAGEP---EKAESILTSM--RKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGV 394

Query: 399 TPSLPAVEAYYNGLKDREVPADDPRLVVV 427
           +P+L   E    G  + + P     L+ V
Sbjct: 395 SPNLKTYETLIWGYGEAKQPLKAEELLQV 423



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 63/136 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT+  +   +       ++  +M+   V P       ++ G  K   + D   F 
Sbjct: 187 DAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFV 246

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK  G LP++ V+N LI       +++    +   M++  V+P+  T+  ++NA ++A
Sbjct: 247 FRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSA 306

Query: 160 GQLDPVYAIVRDMTAA 175
           G++D    I  DM  A
Sbjct: 307 GRMDKCKEIFNDMVKA 322


>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 733

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  Y+ M+L+GV PTR  F+ L+ G     RL     F + MK
Sbjct: 195 YDALFKVILRRGRYMMAKRYYNAMLLEGVDPTRHTFNILLWGMFLSLRLDTAVRFYEDMK 254

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G LPDV  YN LI+   + K  D+A ++F EMK  ++ PN  ++  +L    AAG++D
Sbjct: 255 SRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGRID 314

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
               +  +M   G   +   ++ L+       K+  A D   +++E
Sbjct: 315 DALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVE 360



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 85/200 (42%), Gaps = 5/200 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R    +   YNT++      ++      ++ +M    + P    F +++ G +  
Sbjct: 251 EDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTMLKGYVAA 310

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            R+ D     ++MK  G  P+V  ++ L+  +C   K ++    + E +++Y    +   
Sbjct: 311 GRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNAL 370

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII 206
           ++ +++    AG LD    +++ M       +   Y  LI +    N   +A+    K+I
Sbjct: 371 FMKMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGHYGVLIESFCKANVYDKAEKLLDKLI 430

Query: 207 --ELVEQSKGWSSVETSGNN 224
             E+V + +  S +E S  N
Sbjct: 431 EKEIVLRPQNDSEMEPSAYN 450


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 6/260 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  YA +   Y  ++ +  + R       V+++M+ +G++P   + +++I G ++G R  
Sbjct: 317 RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRP 376

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     + MKA G  P+V  Y  LI    K    D A+R FEEM+    +P+  TY CLL
Sbjct: 377 EAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 436

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                A ++D V A++ +MT  G   D   Y  LI   TN+     D A +I + + +  
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNR--NMPDDAARIYKKMIKKG 494

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKD 272
              ++ T     ++  +G  +  +      E +HR+G  +   +  Y V  +      + 
Sbjct: 495 LEPTIHTYNMMMKSYFLG-GRNYMMGCAVWEEMHRKG--ICPDVNSYTVFINGHIRHGRP 551

Query: 273 VQAMETLLEMLKKDRKSPDV 292
            +A + + EM++K  K+P +
Sbjct: 552 EEACKYIEEMIQKGMKTPQI 571


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 166/403 (41%), Gaps = 39/403 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   Y+ +++ L          +V D M+ +GV+P   ++ +LI   ++ S
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +        M ANG LPD+  YN LI    + K  ++A  +  +M +  +KPN  TY 
Sbjct: 501 RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYG 560

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE- 207
             +N  + +G++       +DM ++G   +   Y  LI  H +      A  T   ++E 
Sbjct: 561 AFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK 620

Query: 208 -LVEQSKGWSSV--ETSGNNAENEMMGVSKE----------ELYNLPTAEY-----VHRR 249
            L+   + +S++    S N    E MGV  +           LYN   + +     + + 
Sbjct: 621 GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKA 680

Query: 250 GGFLSRLL--------TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
                 +L         VY+   +   +L +V     L + +++    PDV      I  
Sbjct: 681 SQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDG 740

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA-MFGYTPKGMQLAQDT-LVNMNSR 359
           Y  SG++    K+F++ I     P   +Y  L++G    G   K + L  +    ++ S 
Sbjct: 741 YCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSL 800

Query: 360 NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
           + F S        L+ +  K G    A  ++D M  +K+TP++
Sbjct: 801 SAFNS--------LIDSFCKHGKVIEARELFDDMVDKKLTPNI 835



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 12/296 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V     Q+R    + +++ M   G+ P R  + +LI G +K   +++    +D+M 
Sbjct: 314 YTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI 373

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   +V  YN +I    K     +A+ +F EM    ++P+  TY  L++    +  + 
Sbjct: 374 TRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMA 433

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               ++ +M A       F Y+ LI+   H++ + +A++   ++I         + V+ +
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR--------NGVKPN 485

Query: 222 GNNAENEMMGVSKEELYNLPTAEY-VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                  +    +E  Y +      +    G L  L     +    C   K  +A   L+
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +M +K  K P+ +     I  Y  SG+I    + F+D + S   P   +Y  L++G
Sbjct: 546 DMGEKGIK-PNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKG 600



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 167/406 (41%), Gaps = 46/406 (11%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   YN ++  +           ++++M++ G++P    ++ LI G +K 
Sbjct: 370 DEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKS 429

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +        +MKA    P    Y+ LIS  G C +SD  +A  + ++M +  VKPN  
Sbjct: 430 HDMAKACELLAEMKARKLTPSPFTYSVLIS--GLCHSSDLQKANEVLDQMIRNGVKPNVF 487

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRAD----DT 201
            Y  L+ A     + +    +++ M A G   D FCY  LI       K+  A     D 
Sbjct: 488 MYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDM 547

Query: 202 ATKII------------------ELVEQSKGWSSVETSG---NNAENEMMGVSKEELYN- 239
             K I                  E+    + +  + +SG   NN    ++     ++ N 
Sbjct: 548 GEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNT 607

Query: 240 ---LPTAEYVHRRGGFLSRLLTVYHVAFHACAEL-KDVQAMETLLEMLKKDRKSPDVYIV 295
              L T + +  +G  L   +  Y    H+ ++  K  +AM   L+ LK     PDV++ 
Sbjct: 608 VEALSTFKCMLEKG--LIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV-VPDVFLY 664

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLV 354
              I  +   GDI+   +++++ + +   P   +Y TL+ G    G   K  +L  +   
Sbjct: 665 NSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDE--- 721

Query: 355 NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            +  ++  L P + +   ++    KSG  T A  ++D M ++ I+P
Sbjct: 722 -IEEKD--LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISP 764



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 34/186 (18%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++  L         R+++D++    + P    + ++I G  K   L + F   
Sbjct: 695 NIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLF 754

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV----------------- 142
           D+M + G  PD  +Y  LI  CGK  N ++A+ +F E ++  V                 
Sbjct: 755 DEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHG 814

Query: 143 -----------------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
                             PN  TY  L++A   A  ++    +  DM       +   Y 
Sbjct: 815 KVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYT 874

Query: 186 GLITAH 191
            L+ ++
Sbjct: 875 SLLLSY 880



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           F+SLI    K  ++ +     D M      P++  Y  LI   GK +  ++A ++F +M+
Sbjct: 803 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 862

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              + PN  TY  LL +    G    + ++ +DM A G   D   Y  + +A+
Sbjct: 863 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 915



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 125/331 (37%), Gaps = 15/331 (4%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    +++ I G  +   + +    +  M   G  PD   Y  L+    K K S +A  
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TA 190
           IFE M    + PN  TY  L++     G ++    I  +M   G  L+   Y  +I   A
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
              ++ +A     +++    +   W+         ++  M  + E L     AE   R+ 
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELL-----AEMKARK- 446

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
             L+     Y V         D+Q    +L+ + ++   P+V++    I+ Y+     + 
Sbjct: 447 --LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504

Query: 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSD 370
             ++ +  I +   P    Y  L+ G       K ++ A+  LV+M  + I   P   + 
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLC---RAKKVEEAKMLLVDMGEKGI--KPNAHTY 559

Query: 371 LLLVAAGEKSGGYTTANYIWDLMQARKITPS 401
              +    KSG    A   +  M +  I P+
Sbjct: 560 GAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 6/260 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  YA +   Y  ++ +  + R       V+++M+ +G++P   + +++I G ++G R  
Sbjct: 317 RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRP 376

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     + MKA G  P+V  Y  LI    K    D A+R FEEM+    +P+  TY CLL
Sbjct: 377 EAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 436

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                A ++D V A++ +MT  G   D   Y  LI   TN+     D A +I + + +  
Sbjct: 437 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNR--NMPDDAARIYKKMIKKG 494

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKD 272
              ++ T     ++  +G  +  +      E +HR+G  +   +  Y V  +      + 
Sbjct: 495 LEPTIHTYNMMMKSYFLG-GRNYMMGCAVWEEMHRKG--ICPDVNSYTVFINGHIRHGRP 551

Query: 273 VQAMETLLEMLKKDRKSPDV 292
            +A + + EM++K  K+P +
Sbjct: 552 EEACKYIEEMIQKGMKTPQI 571


>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
          Length = 637

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 166/378 (43%), Gaps = 17/378 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++T+LT+QR F  +  +  ++ L GV+P    F++LI   ++  R+ +      +MK
Sbjct: 105 YTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAINTFWKMK 164

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   G     +++ R+F+ M  +  V+PN  TY  L+ A      L
Sbjct: 165 HSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNL 224

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIELVEQSKGWSSVET 220
           +  + +V  M A G   D   Y  + +A+ N  +  RA++   +I   V  S+    +  
Sbjct: 225 EEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIII 284

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
            G   E  +     EE   L   + +   G   +  + +++       +  D+ A+  +L
Sbjct: 285 GGYCREGRL-----EEA--LRCVQQMKDAGSVPN--VVIFNTLLKGFLDANDMAAVNKIL 335

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            ++KK    PD+      +  +   G +     VF+  I +   P  ++Y+ L +G +  
Sbjct: 336 GLMKKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRA 395

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
             P   + A+D L+ M+  ++ L P + +   +++         +A  ++D M    + P
Sbjct: 396 QQP---EKAEDLLLQMS--HLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYP 450

Query: 401 SLPAVEAYYNGLKDREVP 418
           +L   E    G  +++ P
Sbjct: 451 NLRTFETLIWGYSEQKQP 468


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 6/260 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  YA +   Y  ++ +  + R       V+++M+ +G++P   + +++I G ++G R  
Sbjct: 63  RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRP 122

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     + MKA G  P+V  Y  LI    K    D A+R FEEM+    +P+  TY CLL
Sbjct: 123 EAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLL 182

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                A ++D V A++ +MT  G   D   Y  LI   TN+     D A +I + + +  
Sbjct: 183 VGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNR--NMPDDAARIYKKMIKKG 240

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKD 272
              ++ T     ++  +G  +  +      E +HR+G  +   +  Y V  +      + 
Sbjct: 241 LEPTIHTYNMMMKSYFLG-GRNYMMGCAVWEEMHRKG--ICPDVNSYTVFINGHIRHGRP 297

Query: 273 VQAMETLLEMLKKDRKSPDV 292
            +A + + EM++K  K+P +
Sbjct: 298 EEACKYIEEMIQKGMKTPQI 317


>gi|356567152|ref|XP_003551785.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Glycine max]
          Length = 749

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 20/302 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT+++       +  +  ++  M  +G   T   +H LI   ++  +     +  
Sbjct: 423 DAIVYNTMISICRDVDNWSEIERLWRSMKANGCAGTHVTYHLLINSFVRFDQSDLALYAY 482

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  NG+ PD    N +ISVC K    D A+ +F +M K E+KPN      L+N+   A
Sbjct: 483 REMVQNGYEPDNNTLNVIISVCAKEGKWDAALSVFNKMLKVELKPNLVACNALINSLGRA 542

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+L  V+ +   M +     D + +  L+++  NK  R    A ++ E++E+       +
Sbjct: 543 GELKQVFQVYNTMKSLDLKPDAYTFNALLSS-LNKADR-HHKALELFEMIERD------Q 594

Query: 220 TSGNNAE---NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL--KDVQ 274
           TS  N       +M  SK  L++             LS L   Y++    C EL  K   
Sbjct: 595 TSQFNVHLYNTVLMSCSKLRLWDRAIEILWQMEASGLSDLTMSYNLVIRTC-ELARKPTI 653

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A++    M+ + + SPD++  +  IRC +  GD+    +  E+ I ++  P A LY   V
Sbjct: 654 ALQVYKHMVHQ-KCSPDIFTYLSVIRCCVR-GDL---WEELEE-ILNQTMPNATLYNAAV 707

Query: 335 EG 336
           +G
Sbjct: 708 QG 709



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +  Y  + +  N +++    + ++     V++ M+   ++P     ++LI    +  
Sbjct: 484 EMVQNGYEPDNNTLNVIISVCAKEGKWDAALSVFNKMLKVELKPNLVACNALINSLGRAG 543

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP-NGQTY 149
            L+  F   + MK+    PD   +N L+S   K     +A+ +FE +++ +    N   Y
Sbjct: 544 ELKQVFQVYNTMKSLDLKPDAYTFNALLSSLNKADRHHKALELFEMIERDQTSQFNVHLY 603

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             +L +C+     D    I+  M A+G
Sbjct: 604 NTVLMSCSKLRLWDRAIEILWQMEASG 630


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 7/179 (3%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
            Y+ +   Y  ++ +  + R       V+++M+  G++P   + +++I G ++G R  + 
Sbjct: 324 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEA 383

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLL 153
               + MKA G  P+V  Y  LI  C  CK    D A+  FEEM++   +P+  TY CLL
Sbjct: 384 VKMFELMKAKGPPPNVWTYTMLI--CNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLL 441

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-KIPRADDTATKIIELVEQ 211
                A ++D V A++ +MT  G   D   Y  LI   TN K+P  DD A    +++++
Sbjct: 442 VGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRKMP--DDAARIYKKMIKK 498


>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
          Length = 637

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 166/378 (43%), Gaps = 17/378 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++T+LT+QR F  +  +  ++ L GV+P    F++LI   ++  R+ +      +MK
Sbjct: 105 YTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAINTFWKMK 164

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   G     +++ R+F+ M  +  V+PN  TY  L+ A      L
Sbjct: 165 HSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNL 224

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIELVEQSKGWSSVET 220
           +  + +V  M A G   D   Y  + +A+ N  +  RA++   +I   V  S+    +  
Sbjct: 225 EEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIII 284

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
            G   E  +     EE   L   + +   G   +  + +++       +  D+ A+  +L
Sbjct: 285 GGYCREGRL-----EEA--LRCVQQMKDAGSVPN--VVIFNTLLKGFLDANDMAAVNKIL 335

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            +++K    PD+      +  +   G +     VF+  I +   P  ++Y+ L +G +  
Sbjct: 336 GLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRA 395

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
             P   + A+D L+ M+  ++ L P + +   +++         +A  ++D M    + P
Sbjct: 396 QQP---EKAEDLLLQMS--HLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYP 450

Query: 401 SLPAVEAYYNGLKDREVP 418
           +L   E    G  +++ P
Sbjct: 451 NLRTFETLIWGYSEQKQP 468


>gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
 gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
          Length = 823

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 2/177 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + Y    + Y+++V S+    R      +Y +M L  ++P+  +F SLI   +K 
Sbjct: 324 QEMKEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRPSALMFVSLIESHVKA 383

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L       D MK  GF P+  +Y+ ++    K    D A+ +F EM+K    P   TY
Sbjct: 384 GKLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVFTEMEKAGFLPIPSTY 443

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            CLL   AA+G +D    +   MT AG  L    Y  L+T   NK  +  D A K++
Sbjct: 444 CCLLEMQAASGHVDAAMKLYNSMTNAGLRLGLNTYTSLLTLLANK--KLIDIAAKVL 498



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++T   ++   +   ++Y+ M           F  +I    K  RL        +MK
Sbjct: 268 YNSLITLFLNKGLPYKAFEIYESMAGAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMK 327

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              + P   VY+ L+   GK    D +++I+ EM+  E++P+   +V L+ +   AG+LD
Sbjct: 328 EKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRPSALMFVSLIESHVKAGKLD 387

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
               +  DM  AG   +   Y+ ++ +H
Sbjct: 388 TALKLWDDMKRAGFKPNFGLYSMVVESH 415



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 42/214 (19%)

Query: 32  YARRN--YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD---GVQPTRDLFHSLIVGT 86
           +A+R   Y+ N   Y  +   L  +R F  ++ ++D+++ D       +   ++ +I   
Sbjct: 181 WAKRQSWYSPNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDETVSFSAYNRVIQYL 240

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV-------------------------- 120
            K  +L+ +F    ++  +GF  D   YN LI++                          
Sbjct: 241 AKAEKLEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIYESMAGAECSLDA 300

Query: 121 ---------CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
                      K    D A+++F+EMK+ + +P    Y  L+++   AG+LD    I  +
Sbjct: 301 STFELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYME 360

Query: 172 MTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
           M           +  LI +H        DTA K+
Sbjct: 361 MQLLELRPSALMFVSLIESHVK--AGKLDTALKL 392


>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
 gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
          Length = 643

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 169/378 (44%), Gaps = 17/378 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++T+LT+QR F  +  +   + L G++P    F++LI   ++  R+ +      +MK
Sbjct: 110 YTILLTALTNQRMFESIPSLLAQVELAGIRPDSIFFNALINAFVEAKRMGEAINTFWKMK 169

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   G     +++ R+F+ M  +  +KPN  TY  L+ A      L
Sbjct: 170 HSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGIEGSIKPNLTTYNILVKAWCDRRNL 229

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIELVEQSKGWSSVET 220
           +  + +V  M A G   D   Y  + +A+ N  +  RA++   +I   V  S+    +  
Sbjct: 230 EEAWGVVGKMRAGGVEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIII 289

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
            G   E+ +    +E L  +       +  G +  ++ +++       ++ D+ A+  +L
Sbjct: 290 GGYCRESRL----EEALRCVQQM----KDAGIVPNVV-IFNTLLKGFLDVNDMAAVNNIL 340

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            ++++    PD+      +  +   G +    KVF+  I +   P  ++Y+ L +G +  
Sbjct: 341 GLMEQFGIKPDIVTYSHQLNTFSSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGFVRA 400

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
             P   + A+D L+ M+  ++ + P + +   +++         +A  +++ M    + P
Sbjct: 401 KQP---EKAEDLLLQMS--HLGVCPNVVTFTTVISGWCSVADMESAMRVYEKMCKSGVYP 455

Query: 401 SLPAVEAYYNGLKDREVP 418
           +L   E    G  +++ P
Sbjct: 456 NLRTFETLIWGYSEQKQP 473


>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 738

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 2/166 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  Y+ M+ + V+PTR  ++ L+ G     RL     F + MK
Sbjct: 195 YDALFKVILRRGRYMMAKRYYNAMLNESVEPTRHTYNILLWGMFLSLRLDTAVRFYEDMK 254

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G LPDV  YN LI+   + K  ++A ++F EMK  ++ PN  ++  +L    AAGQ+D
Sbjct: 255 SRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQID 314

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
               +  +M   G   +   ++ L+       K+  A D   +++E
Sbjct: 315 DALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVE 360


>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
 gi|194704512|gb|ACF86340.1| unknown [Zea mays]
          Length = 637

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 166/378 (43%), Gaps = 17/378 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++T+LT+QR F  +  +  ++ L GV+P    F++LI   ++  R+ +      +MK
Sbjct: 105 YTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAINTFWKMK 164

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   G     +++ R+F+ M  +  V+PN  TY  L+ A      L
Sbjct: 165 HSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNL 224

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIELVEQSKGWSSVET 220
           +  + +V  M A G   D   Y  + +A+ N  +  RA++   +I   V  S+    +  
Sbjct: 225 EEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIII 284

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
            G   E  +     EE   L   + +   G   +  + +++       +  D+ A+  +L
Sbjct: 285 GGYCREGRL-----EEA--LRCVQQMKDAGSVPN--VVIFNTLLKGFLDANDMAAVNKIL 335

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            +++K    PD+      +  +   G +     VF+  I +   P  ++Y+ L +G +  
Sbjct: 336 GLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRA 395

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
             P   + A+D L+ M+  ++ L P + +   +++         +A  ++D M    + P
Sbjct: 396 QQP---EKAEDLLLQMS--HLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYP 450

Query: 401 SLPAVEAYYNGLKDREVP 418
           +L   E    G  +++ P
Sbjct: 451 NLRTFETPIWGYSEQKQP 468


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 166/391 (42%), Gaps = 14/391 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +LT Q+RF  +  +   +  +G+ P    F+++I    +   ++       +M+
Sbjct: 51  YTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQ 110

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQL 162
            NG  P  + YN LI   G     ++++++ E M +   VKPN +TY  L+ A     ++
Sbjct: 111 ENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRI 170

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
              + +V  M A+G   D   Y  + TA+  K   A D A  +I L  Q+ G   V+ + 
Sbjct: 171 TEAWNVVYKMIASGIQPDVVTYNTIATAYAQK--GALDQAEGVI-LEMQNNG---VQPNE 224

Query: 223 NNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                 M G  KE  +       Y  +  G    L+ +++        + D   ++ +L 
Sbjct: 225 RTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLV-IFNSLIKGFVAIMDRDGVDEVLN 283

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGY 341
           ++++    PDV      +  +  +G ++   ++F+D + +   P A  Y+ L +G +   
Sbjct: 284 LMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQ 343

Query: 342 TPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS 401
            P   + A++ L  M        P +     +++    +G    A  ++D M  R I+P+
Sbjct: 344 EP---EKAEELLTTMIKSG--FQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPN 398

Query: 402 LPAVEAYYNGLKDREVPADDPRLVVVSRAYD 432
           L   E    G  +   P     ++ +   ++
Sbjct: 399 LKTFETLIWGFAEARQPWKAEEILQIMTEFE 429



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 37/209 (17%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS-------------- 81
           N   N   YN +V +  +++R     +V   M+  G+QP    +++              
Sbjct: 149 NVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQA 208

Query: 82  ---------------------LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
                                ++ G  K  R+++   F  +MK  G  P++ ++N LI  
Sbjct: 209 EGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKG 268

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                + D    +   M+++ VKP+  T+  ++NA + AG ++    I  DM  AG   D
Sbjct: 269 FVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPD 328

Query: 181 KFCYAGLITAHT--NKIPRADDTATKIIE 207
              Y+ L   +    +  +A++  T +I+
Sbjct: 329 AHAYSILAKGYVRAQEPEKAEELLTTMIK 357


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 16/311 (5%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +RN   +   Y TVV  + S        ++  +M+  G +P   ++ +LI   ++ S
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R  D      +MK  G  PD+  YN LI    K K  D+A     EM +  +KPN  TY 
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             ++    A +       V++M   G   +K    GLI  +  K            +++E
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK-----------EKVIE 575

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELY---NLPTAEYVHR--RGGFLSRLLTVYHVAFH 265
               + S+   G   + +   V    L+    +  AE + R  RG  ++  +  Y V  +
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
             ++L ++Q   ++ + + ++  +P+V I    +  +  SG+I+   ++ ++       P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 326 PAELYATLVEG 336
            A  Y T+++G
Sbjct: 696 NAVTYCTIIDG 706



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 121/318 (38%), Gaps = 18/318 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  ++  L    +     +++ +M   G+ P    +  LI G  K   +Q      
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  P+V +YN L+   G C++   ++A  + +EM    + PN  TY  +++   
Sbjct: 651 DEMVEEGLTPNVIIYNMLLG--GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            +G L   + +  +M   G   D F Y  L+        R +D    I       KG +S
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC----RLNDVERAITIFGTNKKGCAS 764

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHR-RGGFLSRLL----TVYHVAFHACAELKD 272
                N   N +    K EL      E ++R   G   R        Y++      +  +
Sbjct: 765 STAPFNALINWVFKFGKTEL----KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGN 820

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           ++A + L   ++     P V      +  Y   G       VF++ I +   P   +Y+ 
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSV 880

Query: 333 LVEGAMF-GYTPKGMQLA 349
           ++   +  G T K + L 
Sbjct: 881 IINAFLKEGMTTKALVLV 898



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 29  AEEYAR----RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AEE  R    +  A +   Y  ++   +          ++D+M+ +G+ P   +++ L+ 
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEV 142
           G  +   ++      D+M   G  P+   Y  +I   G CK+ D  +A R+F+EMK   +
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID--GYCKSGDLAEAFRLFDEMKLKGL 728

Query: 143 KPNGQTYVCLLNACA 157
            P+   Y  L++ C 
Sbjct: 729 VPDSFVYTTLVDGCC 743



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 49/110 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E        N   YN ++            +++ D+M + G+ P    + ++I G  K 
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
             L + F   D+MK  G +PD  VY  L+  C +  + ++AI IF   KK
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKK 760



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L   R     + +  +M+  G+     ++   I    K   ++      D M 
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMI 374

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G +P    Y  LI    + KN  Q   +  EMKK  +  +  TY  ++    ++G LD
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
             Y IV++M A+G   +   Y  LI        R  D    + E+ EQ
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQN-SRFGDAMRVLKEMKEQ 481



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y  M+  G+      +  L+ G  K  ++ D      +M+  G  PDV  Y  LI+   K
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N  +A  IF+EM +  + PN   Y  LL     +G+++    ++ +M+  G   +   
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 184 YAGLITAH 191
           Y  +I  +
Sbjct: 700 YCTIIDGY 707



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           + M+  G+ P +  +  LI G  K  RL+D      +M + G   D   Y+ LI    K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +N+D A  +  EM  + +      Y C +   +  G ++   A+   M A+G       Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 185 AGLITAH 191
           A LI  +
Sbjct: 386 ASLIEGY 392


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 16/311 (5%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +RN   +   Y TVV  + S        ++  +M+  G +P   ++ +LI   ++ S
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R  D      +MK  G  PD+  YN LI    K K  D+A     EM +  +KPN  TY 
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             ++    A +       V++M   G   +K    GLI  +  K            +++E
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK-----------GKVIE 575

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELY---NLPTAEYVHR--RGGFLSRLLTVYHVAFH 265
               + S+   G   + +   V    L+    +  AE + R  RG  ++  +  Y V  +
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
             ++L ++Q   ++ + + ++  +P+V I    +  +  SG+I+   ++ ++       P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 326 PAELYATLVEG 336
            A  Y T+++G
Sbjct: 696 NAVTYCTIIDG 706



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 121/318 (38%), Gaps = 18/318 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  ++  L    +     +++ +M   G+ P    +  LI G  K   +Q      
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  P+V +YN L+   G C++   ++A  + +EM    + PN  TY  +++   
Sbjct: 651 DEMVEEGLTPNVIIYNMLLG--GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            +G L   + +  +M   G   D F Y  L+        R +D    I       KG +S
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC----RLNDVERAITIFGTNKKGCAS 764

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHR-RGGFLSRLL----TVYHVAFHACAELKD 272
                N   N +    K EL      E ++R   G   R        Y++      +  +
Sbjct: 765 STAPFNALINWVFKFGKTEL----KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGN 820

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           ++A + L   ++     P V      +  Y   G       VF++ I +   P   +Y+ 
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSV 880

Query: 333 LVEGAMF-GYTPKGMQLA 349
           ++   +  G T K + L 
Sbjct: 881 IINAFLKEGMTTKALVLV 898



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 29  AEEYAR----RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AEE  R    +  A +   Y  ++   +          ++D+M+ +G+ P   +++ L+ 
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEV 142
           G  +   ++      D+M   G  P+   Y  +I   G CK+ D  +A R+F+EMK   +
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID--GYCKSGDLAEAFRLFDEMKLKGL 728

Query: 143 KPNGQTYVCLLNACA 157
            P+   Y  L++ C 
Sbjct: 729 VPDSFVYTTLVDGCC 743



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 49/110 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E        N   YN ++            +++ D+M + G+ P    + ++I G  K 
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
             L + F   D+MK  G +PD  VY  L+  C +  + ++AI IF   KK
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKK 760



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L   R     + +  +M+  G+     ++   I    K   ++      D M 
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMI 374

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G +P    Y  LI    + KN  Q   +  EMKK  +  +  TY  ++    ++G LD
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
             Y IV++M A+G   +   Y  LI        R  D    + E+ EQ
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQN-SRFGDAMRVLKEMKEQ 481



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y  M+  G+      +  L+ G  K  ++ D      +M+  G  PDV  Y  LI+   K
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N  +A  IF+EM +  + PN   Y  LL     +G+++    ++ +M+  G   +   
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 184 YAGLITAH 191
           Y  +I  +
Sbjct: 700 YCTIIDGY 707



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           + M+  G+ P +  +  LI G  K  RL+D      +M + G   D   Y+ LI    K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +N+D A  +  EM  + +      Y C +   +  G ++   A+   M A+G       Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 185 AGLITAH 191
           A LI  +
Sbjct: 386 ASLIEGY 392


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 162/382 (42%), Gaps = 30/382 (7%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   Y+ +++ L          +V D M+ +GV+P   ++ +LI   ++ S
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +        M ANG LPD+  YN LI    + K  ++A  +  +M +  +KPN  TY 
Sbjct: 501 RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYG 560

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE- 207
             +N  + +G++       +DM ++G   +   Y  LI  H +      A  T   ++E 
Sbjct: 561 AFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK 620

Query: 208 -LVEQSKGWSSV--ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
            L+   + +S++    S N    E MGV  + L           + G +  +     +  
Sbjct: 621 GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL-----------KTGVVPDVFLYNSLIS 669

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             C E  D++    L + +  +  +P+  VY  + N   Y  SG++    K+F++ I   
Sbjct: 670 GFCKE-GDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKG 728

Query: 323 KFPPAELYATLVEGA-MFGYTPKGMQLAQDT-LVNMNSRNIFLSPRMGSDLLLVAAGEKS 380
             P   +Y  L++G    G   K + L  +    ++ S + F S        L+ +  K 
Sbjct: 729 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNS--------LIDSFCKH 780

Query: 381 GGYTTANYIWDLMQARKITPSL 402
           G    A  ++D M  +K+TP++
Sbjct: 781 GKVIEARELFDDMVDKKLTPNI 802



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 12/296 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V     Q+R    + +++ M   G+ P R  + +LI G +K   +++    +D+M 
Sbjct: 314 YTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI 373

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   +V  YN +I    K     +A+ +F EM    ++P+  TY  L++    +  + 
Sbjct: 374 TRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMA 433

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               ++ +M A       F Y+ LI+   H++ + +A++   ++I         + V+ +
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR--------NGVKPN 485

Query: 222 GNNAENEMMGVSKEELYNLPTAEY-VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                  +    +E  Y +      +    G L  L     +    C   K  +A   L+
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +M +K  K P+ +     I  Y  SG+I    + F+D + S   P   +Y  L++G
Sbjct: 546 DMGEKGIK-PNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKG 600



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 150/378 (39%), Gaps = 23/378 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   YN ++  +           ++++M++ G++P    ++ LI G +K 
Sbjct: 370 DEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKS 429

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +        +MKA    P    Y+ LIS  G C +SD  +A  + ++M +  VKPN  
Sbjct: 430 HDMAKACELLAEMKARKLTPSPFTYSVLIS--GLCHSSDLQKANEVLDQMIRNGVKPNVF 487

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
            Y  L+ A     + +    +++ M A G   D FCY  LI      + RA       + 
Sbjct: 488 MYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIG----LCRAKKVEEAKML 543

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR----RGGFLSRLLTVYHVA 263
           LV+  +           A   +   S E    +  AE   +     G   + ++    + 
Sbjct: 544 LVDMGEKGIKPNAHTYGAFINLYSKSGE----IQVAERYFKDMLSSGIVPNNVIYTILIK 599

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
            H C     V+A+ T   ML+K    PD+      I     +G       VF  ++ +  
Sbjct: 600 GH-CDVGNTVEALSTFKCMLEKGL-IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657

Query: 324 FPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGG 382
            P   LY +L+ G    G   K  QL  + L N  + NI +   + +D        KSG 
Sbjct: 658 VPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDY----GYCKSGN 713

Query: 383 YTTANYIWDLMQARKITP 400
            T A  ++D M ++ I+P
Sbjct: 714 LTEAFKLFDEMISKGISP 731



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 36/184 (19%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRLQDTFFFRDQ 101
           YN++++    +        +YD+M+ +G+ P   ++++LI   G  K   L + F   D+
Sbjct: 664 YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDE 723

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV------------------- 142
           M + G  PD  +Y  LI  CGK  N ++A+ +F E ++  V                   
Sbjct: 724 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKV 783

Query: 143 ---------------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
                           PN  TY  L++A   A  ++    +  DM       +   Y  L
Sbjct: 784 IEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSL 843

Query: 188 ITAH 191
           + ++
Sbjct: 844 LLSY 847



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           F+SLI    K  ++ +     D M      P++  Y  LI   GK +  ++A ++F +M+
Sbjct: 770 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 829

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              + PN  TY  LL +    G    + ++ +DM A G   D   Y  + +A+
Sbjct: 830 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAY 882



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 125/331 (37%), Gaps = 15/331 (4%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    +++ I G  +   + +    +  M   G  PD   Y  L+    K K S +A  
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TA 190
           IFE M    + PN  TY  L++     G ++    I  +M   G  L+   Y  +I   A
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
              ++ +A     +++    +   W+         ++  M  + E L     AE   R+ 
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELL-----AEMKARK- 446

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
             L+     Y V         D+Q    +L+ + ++   P+V++    I+ Y+     + 
Sbjct: 447 --LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504

Query: 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSD 370
             ++ +  I +   P    Y  L+ G       K ++ A+  LV+M  + I   P   + 
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLC---RAKKVEEAKMLLVDMGEKGI--KPNAHTY 559

Query: 371 LLLVAAGEKSGGYTTANYIWDLMQARKITPS 401
              +    KSG    A   +  M +  I P+
Sbjct: 560 GAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 16/311 (5%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +RN   +   Y TVV  + S        ++  +M+  G +P   ++ +LI   ++ S
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R  D      +MK  G  PD+  YN LI    K K  D+A     EM +  +KPN  TY 
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             ++    A +       V++M   G   +K    GLI  +  K            +++E
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK-----------GKVIE 575

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELY---NLPTAEYVHR--RGGFLSRLLTVYHVAFH 265
               + S+   G   + +   V    L+    +  AE + R  RG  ++  +  Y V  +
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
             ++L ++Q   ++ + + ++  +P+V I    +  +  SG+I+   ++ ++       P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 326 PAELYATLVEG 336
            A  Y T+++G
Sbjct: 696 NAVTYCTIIDG 706



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 121/318 (38%), Gaps = 18/318 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  ++  L    +     +++ +M   G+ P    +  LI G  K   +Q      
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  P+V +YN L+   G C++   ++A  + +EM    + PN  TY  +++   
Sbjct: 651 DEMVEEGLTPNVIIYNMLLG--GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            +G L   + +  +M   G   D F Y  L+        R +D    I       KG +S
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC----RLNDVERAITIFGTNKKGCAS 764

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHR-RGGFLSRLL----TVYHVAFHACAELKD 272
                N   N +    K EL      E ++R   G   R        Y++      +  +
Sbjct: 765 STAPFNALINWVFKFGKTEL----KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGN 820

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           ++A + L   ++     P V      +  Y   G       VF++ I +   P   +Y+ 
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSV 880

Query: 333 LVEGAMF-GYTPKGMQLA 349
           ++   +  G T K + L 
Sbjct: 881 IINAFLKEGMTTKALVLV 898



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 29  AEEYAR----RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AEE  R    +  A +   Y  ++   +          ++D+M+ +G+ P   +++ L+ 
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEV 142
           G  +   ++      D+M   G  P+   Y  +I   G CK+ D  +A R+F+EMK   +
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID--GYCKSGDLAEAFRLFDEMKLKGL 728

Query: 143 KPNGQTYVCLLNACA 157
            P+   Y  L++ C 
Sbjct: 729 VPDSFVYTTLVDGCC 743



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 49/110 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E        N   YN ++            +++ D+M + G+ P    + ++I G  K 
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
             L + F   D+MK  G +PD  VY  L+  C +  + ++AI IF   KK
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKK 760



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L   R     + +  +M+  G+     ++   I    K   ++      D M 
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMI 374

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G +P    Y  LI    + KN  Q   +  EMKK  +  +  TY  ++    ++G LD
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
             Y IV++M A+G   +   Y  LI        R  D    + E+ EQ
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQN-SRFGDAMRVLKEMKEQ 481



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y  M+  G+      +  L+ G  K  ++ D      +M+  G  PDV  Y  LI+   K
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N  +A  IF+EM +  + PN   Y  LL     +G+++    ++ +M+  G   +   
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 184 YAGLITAH 191
           Y  +I  +
Sbjct: 700 YCTIIDGY 707



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           + M+  G+ P +  +  LI G  K  RL+D      +M + G   D   Y+ LI    K 
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +N+D A  +  EM  + +      Y C +   +  G ++   A+   M A+G       Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 185 AGLITAH 191
           A LI  +
Sbjct: 386 ASLIEGY 392


>gi|452819918|gb|EME26968.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 466

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 1/155 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N   YN ++   +   R      +Y ++ L+ G  P    +++++ G  +   LQ     
Sbjct: 247 NKVVYNAMIDICSRTDRMEQALKLYQELKLENGETPDEYTYNAILKGYARAGNLQSAIEV 306

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            +QM + G +P    Y+ LI   GKCK  D+A   FEEM+   ++PN  T+  LL+ACAA
Sbjct: 307 SNQMHSEGIIPRAITYSVLIDSLGKCKRLDEAFGFFEEMEAKGIQPNVITFNVLLSACAA 366

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           +        IV  M   G   D++ Y  L+ A  N
Sbjct: 367 SNNYTRALVIVDWMEERGVAFDRYTYNALMQASVN 401



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTM-KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +V + M  +G+ P R + +S+++ ++ K  RL + F F ++M+A G  P+V  +N L+S 
Sbjct: 305 EVSNQMHSEGIIP-RAITYSVLIDSLGKCKRLDEAFGFFEEMEAKGIQPNVITFNVLLSA 363

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           C    N  +A+ I + M++  V  +  TY  L+ A   + Q +
Sbjct: 364 CAASNNYTRALVIVDWMEERGVAFDRYTYNALMQASVNSKQYE 406



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 51/125 (40%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  Y+ ++ SL   +R       +++M   G+QP    F+ L+      +         D
Sbjct: 319 AITYSVLIDSLGKCKRLDEAFGFFEEMEAKGIQPNVITFNVLLSACAASNNYTRALVIVD 378

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            M+  G   D   YN L+      K  ++ ++ +E+M    V PN  T+  L+ A     
Sbjct: 379 WMEERGVAFDRYTYNALMQASVNSKQYEETVKWYEKMIHSLVTPNNVTFRYLVEAAGGLV 438

Query: 161 QLDPV 165
           + D V
Sbjct: 439 RFDLV 443



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           P+  VYN +I +C +    +QA+++++E+K +    P+  TY  +L   A AG L     
Sbjct: 246 PNKVVYNAMIDICSRTDRMEQALKLYQELKLENGETPDEYTYNAILKGYARAGNLQSAIE 305

Query: 168 IVRDMTAAGAGLDKFCYAGLI 188
           +   M + G       Y+ LI
Sbjct: 306 VSNQMHSEGIIPRAITYSVLI 326


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 3/174 (1%)

Query: 46  TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105
           T+++ L  + +  L R++++ M   GV P+   + +L+ G  K   L++ +   + MK  
Sbjct: 35  TIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEK 94

Query: 106 GFLPDVAVYNYLISVCGK-CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           G  P+V  YN LI+ C K        + +FEEMK+  V+PN  TY C++NAC      D 
Sbjct: 95  GCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDT 154

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWS 216
              I+++M A     +   Y  +I +   + ++  A +   ++ EL      W+
Sbjct: 155 ASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWT 208



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   Y T++ SL    R     +++++M   G  P    ++SL+    +  R +  
Sbjct: 166 NCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKA 225

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                 M+  G +PD+  YN +I +CG+     +A  +F EM++    P+  TY  +L+A
Sbjct: 226 MCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDA 285

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +   +      +++ M  AG   D + Y  L+ A
Sbjct: 286 YSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDA 320


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 9/300 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++        F    +++  M  +GVQP     ++L+ G  K  R+     F 
Sbjct: 392 NTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFF 451

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  G   + A Y  LIS      N ++A++ FEEM      P+   Y  L++    A
Sbjct: 452 NEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIA 511

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV-EQSKGWSSV 218
           G+++    +V  +  AG  LD+ CY  LI+    K         ++ EL+ E  +     
Sbjct: 512 GRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKK-----KKLERVYELLTEMEETGVKP 566

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAME 277
           +T   N     +G + +        E + + G  L   +  Y    HA    K+V + M+
Sbjct: 567 DTITYNTLISYLGKTGDFATASKVMEKMIKEG--LRPSVVTYGAIIHAYCSKKNVDEGMK 624

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
              EM    +  P+  I    I     + D+D    + ED       P    Y  +++G 
Sbjct: 625 IFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 3/184 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +    NA+ Y  ++++             +++M+  G  P   +++SLI G     
Sbjct: 453 EMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAG 512

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+ D      ++K  GF  D + YN LIS   K K  ++   +  EM++  VKP+  TY 
Sbjct: 513 RMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYN 572

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII-ELV 209
            L++     G       ++  M   G       Y  +I A+ +K  +  D   KI  E+ 
Sbjct: 573 TLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSK--KNVDEGMKIFGEMC 630

Query: 210 EQSK 213
             SK
Sbjct: 631 STSK 634



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 23/273 (8%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQA 130
           +P    ++ LI G  K            QM   G  P+V   N L+   G CK+    +A
Sbjct: 390 RPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVD--GLCKHGRVHRA 447

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +  F EMK   +K N  TY  L++A      ++       +M ++G   D   Y  LI+ 
Sbjct: 448 VEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISG 507

Query: 191 HTNKIPRADDTATKIIELVEQSKGWS------SVETSGNNAENEMMGVSKEELYNLPTAE 244
                 R +D +  + +L  +  G+S      +V  SG   + ++     E +Y L T  
Sbjct: 508 LC-IAGRMNDASVVVSKL--KLAGFSLDRSCYNVLISGFCKKKKL-----ERVYELLTE- 558

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                 G     +T Y+       +  D      ++E + K+   P V      I  Y  
Sbjct: 559 --MEETGVKPDTIT-YNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCS 615

Query: 305 SGDIDNGHKVFEDYICSEKFPP-AELYATLVEG 336
             ++D G K+F +   + K PP   +Y  L++ 
Sbjct: 616 KKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDA 648



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   A +A+  N ++T L   R    + ++  +M    ++P+   F  L+    K  R+ 
Sbjct: 274 RLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRID 333

Query: 94  DTFFFRDQMKANG------FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNG 146
           +     D+++  G        PDV ++N LI    K    +  + + EEMK   + +PN 
Sbjct: 334 EALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNT 393

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
            TY CL++    AG  D  + + R M   G 
Sbjct: 394 VTYNCLIDGFFKAGNFDRAHELFRQMNEEGV 424



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE      + +A  Y ++++ L    R      V   + L G    R  ++ LI G  K 
Sbjct: 487 EEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKK 546

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+  +    +M+  G  PD   YN LIS  GK  +   A ++ E+M K  ++P+  TY
Sbjct: 547 KKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTY 606

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAA 175
             +++A  +   +D    I  +M + 
Sbjct: 607 GAIIHAYCSKKNVDEGMKIFGEMCST 632



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YNT+++ L     F     V + M+ +G++P+   + ++I        + +    F +  
Sbjct: 571 YNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMC 630

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             +   P+  +YN LI    +  + D+AI + E+MK   V+PN  TY  +L        L
Sbjct: 631 STSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKML 690

Query: 163 DPVYAIVRDMT 173
              + ++  M 
Sbjct: 691 HKAFELMDRMV 701


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 3/215 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
            Y+ +   Y  ++ +  + R       V+++M+  G++P   + +++I G ++G R  + 
Sbjct: 328 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEA 387

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + MKA G  P+V  Y  LI    K    D A+  FEEM++   +P+  TY CLL  
Sbjct: 388 LKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVG 447

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
              A ++D V A++ +MT  G   D   Y  LI   TN+  +  D A +I + + +    
Sbjct: 448 YGNAKRMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNR--KMPDDAARIYKKMIKKGLE 505

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
            ++ T     ++  +G  +         E +HRRG
Sbjct: 506 PTIHTYNMMMKSYFLG-DRNYAMGCAVWEEMHRRG 539


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
            Y+ +   Y  ++ +  + R       V+++M+  G+ P   + +++I G ++G R  + 
Sbjct: 326 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEA 385

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + MKA G  P+V  Y  LI    K    D A+  FEEM++ + +P+  TY CLL  
Sbjct: 386 VKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVG 445

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK-IPRADDTATKIIELVEQ 211
              A Q+D V A++ +MT  G   D   Y  LI   TN+ +P  DD A    +++++
Sbjct: 446 YGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMP--DDAARIYKKMIKK 500


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
            Y+ +   Y  ++ +  + R       V+++M+  G+ P   + +++I G ++G R  + 
Sbjct: 326 QYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEA 385

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + MKA G  P+V  Y  LI    K    D A+  FEEM++ + +P+  TY CLL  
Sbjct: 386 VKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVG 445

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK-IPRADDTATKIIELVEQ 211
              A Q+D V A++ +MT  G   D   Y  LI   TN+ +P  DD A    +++++
Sbjct: 446 YGNAKQMDRVTAVLEEMTQKGCPPDARTYNALIKLLTNRNMP--DDAARIYKKMIKK 500


>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
 gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
          Length = 832

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   R    + S ++++V S+    R      VY +M   G +P+  +F SLI    K 
Sbjct: 333 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA 392

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L       D+MK +GF P+  +Y  +I    K    + A+ +F++M+K    P   TY
Sbjct: 393 GKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDMEKAGFLPTPSTY 452

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            CLL   A +GQ+D    I   MT AG       Y  L+T   NK  R  D A KI+
Sbjct: 453 SCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANK--RLVDVAGKIL 507



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S Y  ++ SL    R      ++  M    ++P+  +F SL+    K  RL  +    
Sbjct: 308 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 367

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  P   ++  LI    K    D A+R+++EMKK   +PN   Y  ++ + A +
Sbjct: 368 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKS 427

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
           G+L+   ++ +DM  AG       Y+ L+  H        D+A KI
Sbjct: 428 GKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGS--GQVDSAMKI 471



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 72/169 (42%), Gaps = 2/169 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L    +  +    +      G +     +++L++  +        F   + M+
Sbjct: 242 YNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESME 301

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
               L D + Y  +I    K    D A ++F++MK+ +++P+   +  L+++   AG+LD
Sbjct: 302 KTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLD 361

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
               +  +M   G       +  LI ++        DTA ++ + +++S
Sbjct: 362 TSMKVYMEMQGFGHRPSATMFVSLIDSYAKA--GKLDTALRLWDEMKKS 408


>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
 gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
 gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   R    + S ++++V S+    R      VY +M   G +P+  +F SLI    K 
Sbjct: 337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA 396

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L       D+MK +GF P+  +Y  +I    K    + A+ +F++M+K    P   TY
Sbjct: 397 GKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTY 456

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            CLL   A +GQ+D    I   MT AG       Y  L+T   NK  R  D A KI+
Sbjct: 457 SCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANK--RLVDVAGKIL 511



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S Y  ++ SL    R      ++  M    ++P+  +F SL+    K  RL  +    
Sbjct: 312 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 371

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  P   ++  LI    K    D A+R+++EMKK   +PN   Y  ++ + A +
Sbjct: 372 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKS 431

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
           G+L+    + +DM  AG       Y+ L+  H        D+A KI
Sbjct: 432 GKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGS--GQVDSAMKI 475



 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 37/197 (18%), Positives = 84/197 (42%), Gaps = 5/197 (2%)

Query: 19  GRRFFVTSAGAEEYARRNYAN---NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           GR F    +  EE  + + ++   + + YN V+  L    +  +    +      G +  
Sbjct: 218 GRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKID 277

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
              +++L++  +        F   + M+    L D + Y  +I    K    D A ++F+
Sbjct: 278 TQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQ 337

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
           +MK+ +++P+   +  L+++   AG+LD    +  +M   G       +  LI ++    
Sbjct: 338 QMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA- 396

Query: 196 PRADDTATKIIELVEQS 212
               DTA ++ + +++S
Sbjct: 397 -GKLDTALRLWDEMKKS 412


>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
 gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
          Length = 785

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 4/195 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   RN+  +   ++++V S+    R      VY +M   G++P+  ++ SLI    K 
Sbjct: 286 QEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTKA 345

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L       D+MK  GF P+  +Y  +I    K    D A+ IF +M+K    P   TY
Sbjct: 346 GKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTY 405

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             LL   AA+GQ+D    +   MT AG       Y  L+T   +K  +  D A KI  L+
Sbjct: 406 SSLLEMHAASGQVDAAMKLYNSMTNAGLRPGLSTYTALLTLLAHK--KLVDVAAKI--LL 461

Query: 210 EQSKGWSSVETSGNN 224
           E      SV+ S ++
Sbjct: 462 EMKAMGFSVDVSASD 476



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S Y  ++ SL    R      ++ +M     +P+  +F SL+    K  RL+ +    
Sbjct: 261 DVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVY 320

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  P   +Y  LI    K    D A+R+++EMK    +PN   Y  ++ + A +
Sbjct: 321 MEMQGLGLRPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKS 380

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           G+LD   +I RDM  AG       Y+ L+  H
Sbjct: 381 GKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMH 412



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 64/156 (41%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A   S YN V+  L    +  +    +  +   G +   + ++ L+   +        F 
Sbjct: 189 ATQFSAYNRVLKYLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAFE 248

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             + M+A     DV+ Y  +I    K    D A ++F+EMK+   +P+   +  L+++  
Sbjct: 249 IYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMG 308

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            AG+L+    +  +M   G       Y  LI ++T 
Sbjct: 309 KAGRLETSMKVYMEMQGLGLRPSAIMYVSLIESYTK 344


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   YN ++  L    +      +++ M  +G+ P+   F+ LI G  K 
Sbjct: 132 DEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKA 191

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            ++ +   F +QMKA G  P V  YN LI   G C+  D   AIR F +MK+  + P   
Sbjct: 192 GKMSNALHFFNQMKAAGLQPSVVTYNELIG--GFCRARDIAHAIRAFSDMKERRLAPTKV 249

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           TY  L+ A A   ++D  + ++ +M  AG  +D   Y  L+ A
Sbjct: 250 TYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHA 292



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 8/146 (5%)

Query: 35  RNYANNASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           R  A     Y  ++ +   +    R F +L ++    +   VQ    L H+L    M+G 
Sbjct: 242 RRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHAL---CMEGK 298

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +     F+  M + G  P+  +Y+ +I   G+  +S +A+R+  EM+K  + PN  +Y 
Sbjct: 299 MMHARKLFQS-MDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASYC 357

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
             +      G+     A++ DM  AG
Sbjct: 358 LTIRLLCNEGKCQEAEALIGDMEDAG 383



 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 52/125 (41%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M   G+QP+   ++ LI G  +   +         MK     P    Y  LI    K
Sbjct: 201 FNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAK 260

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
               D+A  +  EM+K  ++ + Q+Y  LL+A    G++     + + M + G   +   
Sbjct: 261 ENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVL 320

Query: 184 YAGLI 188
           Y  +I
Sbjct: 321 YDMMI 325



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           DVA    L+  C +  +  +A R+F+ M +  V PN  TY  L++     GQ +  +A+V
Sbjct: 37  DVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALV 96

Query: 170 RDMTAAGAGLDKFCYAGLI 188
            +M   G   + + Y  L+
Sbjct: 97  GEMRRGGVEPNLYTYNCLV 115


>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
          Length = 714

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 74/145 (51%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++++    R++ L  ++Y+ MM   V P    ++SLI   ++ +     F F D M+
Sbjct: 309 YSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQ 368

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  P+V  Y+ +I+ C    N   A  +F EM + E+ P+  T+  LL+ C  + Q +
Sbjct: 369 AQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWE 428

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++  M  AG  L+   Y+ ++
Sbjct: 429 QAMDVLEWMQDAGIQLNIRMYSAVV 453



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 2/195 (1%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           A  R++ +     E+   R    N   YN+++ +      F      +DDM   G+ P  
Sbjct: 317 AKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNV 376

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             + ++I            F    +M      PD   ++ L+SVC   K  +QA+ + E 
Sbjct: 377 VTYSTMIASCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEW 436

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           M+   ++ N + Y  +++ C  AG+LD  + I+ +    G   +   +  LI  H  K+ 
Sbjct: 437 MQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALI--HACKVA 494

Query: 197 RADDTATKIIELVEQ 211
           R  D A +++EL+++
Sbjct: 495 RDLDRAFRVLELMKE 509



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 120/292 (41%), Gaps = 43/292 (14%)

Query: 45  NTVVTSLTSQRR---FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           N++ TSL S++R     + + ++ +    G++P    ++SL+   M+  + ++++    +
Sbjct: 237 NSLATSLMSRKRQNTLTIAQILFAEAKAAGLRPDIVTYNSLLGVYMEMGKWKESYDILFE 296

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++    + DV  Y+ LIS   K +    AI ++E+M + +V PN  TY  L+ AC  A  
Sbjct: 297 IEDQHVITDVITYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANN 356

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK-----------------IPRADDTATK 204
               +A   DM A G   +   Y+ +I +  +K                 IP    T + 
Sbjct: 357 FSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSA 416

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
           ++ + + SK W                        +   E++   G  L+  + +Y    
Sbjct: 417 LLSVCQHSKQWEQA---------------------MDVLEWMQDAGIQLN--IRMYSAVV 453

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           H C +   +     +L+  K+D   P+V +    I     + D+D   +V E
Sbjct: 454 HVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLE 505



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+    +   ++ +++     +++    DV + M   G+Q    ++ +++    +  
Sbjct: 401 EMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQAG 460

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL D F   D+ K +G  P+V ++  LI  C   ++ D+A R+ E MK+  V PN  T+ 
Sbjct: 461 RLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTFN 520

Query: 151 CLLNACAAAGQLDPVYAIV 169
            LL  C   G     + +V
Sbjct: 521 VLLGTCEVVGNSTCAFQVV 539



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P+   ++SLI   +K S  Q  F     MK +G   ++  YN +IS+    +   + 
Sbjct: 625 GHTPSVQAYNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEV 684

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           +++  EMK+ EV P+ +T   +++A  A
Sbjct: 685 LKVINEMKQEEVTPDSETIALMIDAVQA 712



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 12/170 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +EY  R    N   +NT++ +      +    +VY  M L  ++P+   F++L +   +G
Sbjct: 543 QEYGFRA---NLQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFNALSMAAEEG 599

Query: 90  SRLQDTFFFRDQMKAN---------GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
              +        M+           G  P V  YN LIS C K  N  +A  +++ MK  
Sbjct: 600 GDWRRAIDVMVDMRIKTEKILIRMAGHTPSVQAYNSLISACVKSSNYQKAFDVYKGMKTS 659

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            V+ N  TY  +++  +   +L  V  ++ +M       D    A +I A
Sbjct: 660 GVRANIVTYNLIISILSGQRKLSEVLKVINEMKQEEVTPDSETIALMIDA 709



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 44  YNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YNTV+++L      Q  F +L+      M + V P    F++ +    +    +      
Sbjct: 124 YNTVLSALRHSPDIQNVFVMLKR-----MREKVSPDIVSFNTALAACQRQCDWESGVAIL 178

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           + M  +    DV  ++ LIS+C +C   D+A  + EEM    V PN  T+  L+  C
Sbjct: 179 EMMSEDQIERDVFTFSTLISLCDRCGKYDEAFALKEEMDAKNVSPNIYTFNALIAVC 235


>gi|303280720|ref|XP_003059652.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458307|gb|EEH55604.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 196

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 72/146 (49%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++ +    R++    +V+++M  +GV+     + +LI    KG +L       +  K 
Sbjct: 31  SALINACGKSRQWKKALEVFEEMRAEGVEANIYTYSALISACAKGKQLDKALEIFELCKV 90

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           NG  PD   Y  +IS C K +  D+A+ IF +MKK  ++ N  TY  LL AC  AG+ D 
Sbjct: 91  NGVEPDGITYGAMISACEKGRRVDKALEIFVQMKKAGMEANAITYNALLAACERAGKADD 150

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITA 190
              +  DM   G   D+  +A LI A
Sbjct: 151 AREVFDDMKRDGIKPDRVAHAALIGA 176



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++D M   G+        +LI    K  + +      ++M+A G   ++  Y+ LIS C
Sbjct: 13  ELHDHMKAKGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEANIYTYSALISAC 72

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K K  D+A+ IFE  K   V+P+G TY  +++AC    ++D    I   M  AG   + 
Sbjct: 73  AKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKALEIFVQMKKAGMEANA 132

Query: 182 FCYAGLITAHTNKIPRADDT 201
             Y  L+ A   +  +ADD 
Sbjct: 133 ITYNALLAA-CERAGKADDA 151



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 60/127 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        N   Y+ ++++    ++     ++++   ++GV+P    + ++I    KG
Sbjct: 51  EEMRAEGVEANIYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKG 110

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+        QMK  G   +   YN L++ C +   +D A  +F++MK+  +KP+   +
Sbjct: 111 RRVDKALEIFVQMKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRDGIKPDRVAH 170

Query: 150 VCLLNAC 156
             L+ AC
Sbjct: 171 AALIGAC 177


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 6/260 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  Y  +   Y  ++ +  + R       V++DM+  G++P   + +++I G ++G R  
Sbjct: 334 RDQYTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRP 393

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     + MKA G  P+V  Y  LI    K    D A+R FEEM+    +P   TY CLL
Sbjct: 394 EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLL 453

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                A ++D V A++ +M   G   D   Y  LI   TN+     D A +I + +    
Sbjct: 454 VGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNR--NMPDDAVRIYKKMITKG 511

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKD 272
              ++ T     ++  +G  +         E +HR+G  +   +  Y V  +      + 
Sbjct: 512 LEPTIHTYNMMMKSYFLG-GRNYAMGCAVWEEMHRKG--ICPDVNSYTVFINGHIRHGRP 568

Query: 273 VQAMETLLEMLKKDRKSPDV 292
            +A + L EM++K  K+P +
Sbjct: 569 AEACKFLEEMIQKGMKAPQI 588



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 2/146 (1%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           D M D   P    + +L++       L +     + M   G  PDV V+N +I    + +
Sbjct: 331 DRMRDQYTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQ 390

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+++FE MK     PN  TY  L+      G+LD       +M  AG   +   Y 
Sbjct: 391 RRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYT 450

Query: 186 GLITAHTNKIPRADDTATKIIELVEQ 211
            L+  + N   +  D  T ++E + Q
Sbjct: 451 CLLVGYGNA--KRMDRVTAMLEEMAQ 474


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +   +N   YN ++  L    +      +++ M  +G++P+   F+ LI G  K 
Sbjct: 132 DEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKA 191

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            ++ +   F +QMKA G  P V  YN LI  CG C+  D  +A+R F +MK+  + P   
Sbjct: 192 GKMANALHFFNQMKAAGLPPSVVTYNELI--CGFCRVRDIARAVRAFLDMKERGLAPTKV 249

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           TY  L+ A A   ++D  + ++ +M  AG  +D   Y  L+ A
Sbjct: 250 TYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHA 292



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 8/146 (5%)

Query: 35  RNYANNASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           R  A     Y  ++ +   +    R F +L ++    +   VQ    L H+L    M+G 
Sbjct: 242 RGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHAL---CMEGK 298

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +     F+  M   G  P+  +Y+ +I   G+  +S +A+R+  EM+K  + PN  +Y 
Sbjct: 299 MMHARKLFQ-SMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYC 357

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
             +      G+     A++ DM  AG
Sbjct: 358 LTIRLLCNEGKCQEAEALIDDMEHAG 383



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           DVA    L+ VC +  +  +A R+F+ M +  V PN  TY  L+N     G  +  +A+ 
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALF 96

Query: 170 RDMTAAGAGLDKFCYAGLI 188
            +M   G   + + Y  LI
Sbjct: 97  AEMRRDGVEPNLYTYNCLI 115


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 29/385 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R  +A N   Y+T+V     +RR    R +  +M+L G      ++   I G  + 
Sbjct: 104 QELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEA 163

Query: 90  SRLQDTFFFRD--QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                 +  RD  +M  +G +PDV  YN  IS   K    D+ + + EEM +  + P+  
Sbjct: 164 RCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVV 223

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKI 205
           T+  +++    A ++D  + + + M   G   D   Y+ ++    + + RA+  DT  ++
Sbjct: 224 TFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIML----DNLSRANRLDTVDEV 279

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV---HRRGGFLSRLLTVYHV 262
           +E ++  K    +E   +NA    +  S +     P A+ +       G L  LL+   V
Sbjct: 280 LEHMQAMKAGCVMEVYTHNAFIGALCRSGK----FPLAKNILLGMIESGSLPNLLSYNFV 335

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY---- 318
               C       A +   +ML      PDV      I  +  +G +   H++  +     
Sbjct: 336 IDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKN 395

Query: 319 ICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAG 377
           IC    P    Y TL++G + FG       L Q  L+    + +   P + +   L+   
Sbjct: 396 IC---VPDVVTYNTLIDGQSKFG------SLKQAKLLLQEMQAVGCKPNVVTYAALINGY 446

Query: 378 EKSGGYTTANYIWDLMQARKITPSL 402
            K G Y  A  ++D M A+   P +
Sbjct: 447 AKHGMYEEAESLFDEMSAKGCFPDI 471



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 10/255 (3%)

Query: 68  MLDG--VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA-NGFLPDVAVYNYLISVCGKC 124
           MLD    +P    F++LI G  K  RL        +MKA N  +PDV  YN LI    K 
Sbjct: 355 MLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKF 414

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            +  QA  + +EM+    KPN  TY  L+N  A  G  +   ++  +M+A G   D   Y
Sbjct: 415 GSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITY 474

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
             +++A +     +   A  + + ++    + S +        +    +++    L   +
Sbjct: 475 NTVLSAFSKAGMMS--KAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQ 532

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDV--QAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            +  RG         Y+V     AE ++V  +A+    +ML +D   P   I    +R +
Sbjct: 533 EMTARGWSCDSY--TYNVLIAKLAETEEVPSKALAVYQQMLDQD-CVPSASIFNSLVRLF 589

Query: 303 LHSGDIDNGHKVFED 317
           L +GD+++   + ++
Sbjct: 590 LRTGDVNSARSMVQE 604



 Score = 44.7 bits (104), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 10/178 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ-PTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           +NT+++      R      +  +M    +  P    +++LI G  K   L+       +M
Sbjct: 368 FNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEM 427

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +A G  P+V  Y  LI+   K    ++A  +F+EM      P+  TY  +L+A + AG +
Sbjct: 428 QAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMM 487

Query: 163 ---DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-KGWS 216
              + VY  +++ T+  +  D   Y  LI  +     RA+DT   +  L E + +GWS
Sbjct: 488 SKAEGVYQQLKNKTSYCSP-DAITYRILIDGYC----RAEDTEQGLTLLQEMTARGWS 540



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 58/156 (37%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A   Y  +   Y T++  L         + +   M   G  P    + +LI G  K  R 
Sbjct: 2   AANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRP 61

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            D      +M  +G  PD+  YN LI         D A  + +E+ +    PN  TY  L
Sbjct: 62  HDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTL 121

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +       +LD    ++R+M   G+  +   Y   I
Sbjct: 122 VIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCI 157


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 161/412 (39%), Gaps = 48/412 (11%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++  +    +     ++  +MM  GV+P    +  LI G  +G  +   F   D+MK
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 417

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P V  Y+ +I+   +C N      I  EM    +KPN   Y  L+ A A  G+++
Sbjct: 418 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 477

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS----------- 212
               I+  M   G   D FCY  LI     K  R ++  T ++E++E+            
Sbjct: 478 ESRMILERMREQGILPDVFCYNSLIIGFC-KAKRMEEARTYLMEMLERRLRPNAHTYGAF 536

Query: 213 -KGWSSVETS--GNNAENEMMGVSKEELYNLPTAEYV-HRRGGFLSRLLTVYHVAFHACA 268
             G+S        +   NEM+         + TA    H + G ++   +V+        
Sbjct: 537 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR-R 595

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
            L+DVQ    L+  L ++                   G +     +F +       P A 
Sbjct: 596 VLQDVQTYSVLIHGLSRN-------------------GKMHEAFGIFSELQEKGLLPNAF 636

Query: 329 LYATLVEGAMF-GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            Y +L+ G+   G   K  QL ++  +        ++P + +  +L+    K+G    A 
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEMCIK------GINPDIVTYNILIDGLCKAGEIERAK 690

Query: 388 YIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLRGRP 439
            ++D ++ R +TP+     A  +G    + P    +L+      + LLRG P
Sbjct: 691 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL-----EEMLLRGVP 737



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 23/334 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R  A     Y+ ++  L           +  +M+++G++P   ++ +L+    K 
Sbjct: 414 DEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKE 473

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R++++    ++M+  G LPDV  YN LI    K K  ++A     EM +  ++PN  TY
Sbjct: 474 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 533

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              ++  + AG+++       +M + G   +   Y  LI  H  +    +  A  +   +
Sbjct: 534 GAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE--AFSVFRFI 591

Query: 210 EQSKGWSSVET--------SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261
              +    V+T        S N   +E  G+  E            +  G L    T   
Sbjct: 592 LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-----------LQEKGLLPNAFTYNS 640

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
           +   +C +  +V     LLE +     +PD+      I     +G+I+    +F+D    
Sbjct: 641 LISGSCKQ-GNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR 699

Query: 322 EKFPPAELYATLVEGAMFGYTPK-GMQLAQDTLV 354
              P    YA +V+G      P    QL ++ L+
Sbjct: 700 GLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 733



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 41/293 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     Q        + D+M+  G++    ++++L+ G  K  +++       +M 
Sbjct: 323 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 382

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   Y+ LI    + +N  +A  + +EMKK ++ P   TY  ++N     G L 
Sbjct: 383 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQ 442

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
              AI+R+M   G   +   Y  L+TAH  K  R +++   +  + EQ            
Sbjct: 443 GTNAILREMVMNGLKPNAVVYTTLMTAHA-KEGRVEESRMILERMREQ------------ 489

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                                      G L  +     +    C   +  +A   L+EML
Sbjct: 490 ---------------------------GILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 522

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           ++ R  P+ +     I  Y  +G+++   + F + +     P   +Y  L+EG
Sbjct: 523 ER-RLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 574



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    +A  YN ++     + +F    D++ +M+  G   T   F++LI G  K 
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKS 787

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +LQ+     ++M    F+P+   Y  LI    K     +A R++ EM++  V P  +TY
Sbjct: 788 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 847

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             LL+     G +  V A+  +M A G   DK  Y  +I A+
Sbjct: 848 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAY 889



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 128/339 (37%), Gaps = 37/339 (10%)

Query: 2   RLLQ-----SIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRR 56
           R+LQ     S+  H  S  G +   F + S    E   +    NA  YN++++    Q  
Sbjct: 595 RVLQDVQTYSVLIHGLSRNGKMHEAFGIFS----ELQEKGLLPNAFTYNSLISGSCKQGN 650

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
                 + ++M + G+ P    ++ LI G  K   ++      D ++  G  P+   Y  
Sbjct: 651 VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAA 710

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           ++    K KN   A ++ EEM    V P+   Y  +LN C    + +    + ++M   G
Sbjct: 711 MVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG 770

Query: 177 AGLDKFCYAGLITAH--TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
                  +  LI  +  + K+  A+    ++IE        +      +N +  MMG +K
Sbjct: 771 FA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAK 829

Query: 235 ------EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288
                 +E   +PTA+               Y    H    + ++  +  L E +     
Sbjct: 830 RLWLEMQERNVMPTAK--------------TYTSLLHGYHNIGNMSEVSALFEEMVAKGI 875

Query: 289 SPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            PD   Y VM  I  Y   G++    K+ +D I  +  P
Sbjct: 876 EPDKMTYYVM--IDAYCREGNVMEACKL-KDEILVKGMP 911



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 147/385 (38%), Gaps = 17/385 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +  + N   YN ++  L   R      ++   M+  G+ P    +  LI G     
Sbjct: 240 EMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEK 299

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R ++      +M   G  P+   YN LI    +  + +QA RI +EM    ++ N   + 
Sbjct: 300 RSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWN 359

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            LLN    AG+++    I+++M   G   D   Y+ LI  H     R  + A +  EL++
Sbjct: 360 TLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHC----RGQNMA-RAFELLD 414

Query: 211 QSKGWSSVET--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           + K      T  + +   N +      +  N    E V      L     VY     A A
Sbjct: 415 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG---LKPNAVVYTTLMTAHA 471

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           +   V+    +LE +++    PDV+     I  +  +  ++       + +     P A 
Sbjct: 472 KEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAH 531

Query: 329 LYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            Y   ++    GY+  G M++A      M S  +   P +G    L+    K G  T A 
Sbjct: 532 TYGAFID----GYSKAGEMEIADRYFNEMLSCGVL--PNVGIYTALIEGHCKEGNVTEAF 585

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            ++  + +R++   +       +GL
Sbjct: 586 SVFRFILSRRVLQDVQTYSVLIHGL 610



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 164/442 (37%), Gaps = 87/442 (19%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           T+A   E        NA  Y T++T+   + R    R + + M   G+ P    ++SLI+
Sbjct: 444 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLII 503

Query: 85  GTMKGSRLQD--TFFFR---------------------------------DQMKANGFLP 109
           G  K  R+++  T+                                    ++M + G LP
Sbjct: 504 GFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLP 563

Query: 110 DVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           +V +Y  LI   G CK  N  +A  +F  +    V  + QTY  L++  +  G++   + 
Sbjct: 564 NVGIYTALIE--GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 621

Query: 168 IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227
           I  ++   G   + F Y  LI+    +     D A++++E                  E 
Sbjct: 622 IFSELQEKGLLPNAFTYNSLISGSCKQ--GNVDKASQLLE------------------EM 661

Query: 228 EMMGVSKEEL-YN-----LPTAEYVHRRGGFL----SRLLTVYHVAFHA-----CAELKD 272
            + G++ + + YN     L  A  + R          R LT   V + A     C     
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 721

Query: 273 VQAMETLLEMLKKDRKSPDVYI--VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             A + L EML +    PD +I  V+ N  C       +    +F++ +  + F     +
Sbjct: 722 TAAFQLLEEMLLRG-VPPDAFIYNVILNFCC--KEEKFEKALDLFQEML-EKGFASTVSF 777

Query: 331 ATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
            TL+E    GY   G +Q A   L  M  +     P   +   L+    K+G    A  +
Sbjct: 778 NTLIE----GYCKSGKLQEANHLLEEMIEKQFI--PNHVTYTSLIDHNCKAGMMGEAKRL 831

Query: 390 WDLMQARKITPSLPAVEAYYNG 411
           W  MQ R + P+     +  +G
Sbjct: 832 WLEMQERNVMPTAKTYTSLLHG 853



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/304 (18%), Positives = 120/304 (39%), Gaps = 11/304 (3%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    +   Y+ ++  L+   +      ++ ++   G+ P    ++SLI G+ K   +  
Sbjct: 594 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 653

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                ++M   G  PD+  YN LI    K    ++A  +F++++   + PN  TY  +++
Sbjct: 654 ASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD 713

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQS 212
               +      + ++ +M   G   D F Y  ++       K  +A D   +++E     
Sbjct: 714 GYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE----- 768

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
           KG++S   S N          K +  N    E + ++  F+   +T   +  H C     
Sbjct: 769 KGFAST-VSFNTLIEGYCKSGKLQEANHLLEEMIEKQ--FIPNHVTYTSLIDHNCKAGMM 825

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
            +A    LEM +++   P        +  Y + G++     +FE+ +     P    Y  
Sbjct: 826 GEAKRLWLEMQERNVM-PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYV 884

Query: 333 LVEG 336
           +++ 
Sbjct: 885 MIDA 888



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P+    +SL+   +KG++++  +   D M A+  LPDV  Y  +IS   K  N   A R
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +  EM +    PN  TY  ++     A  LD    + R M   G   D + Y  LI    
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296

Query: 193 NKIPRADDTATKIIELVE 210
            +  R+ +    ++E+++
Sbjct: 297 ME-KRSREAKLMLLEMID 313


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 161/412 (39%), Gaps = 48/412 (11%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++  +    +     ++  +MM  GV+P    +  LI G  +G  +   F   D+MK
Sbjct: 349 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 408

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P V  Y+ +I+   +C N      I  EM    +KPN   Y  L+ A A  G+++
Sbjct: 409 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 468

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS----------- 212
               I+  M   G   D FCY  LI     K  R ++  T ++E++E+            
Sbjct: 469 ESRMILERMREQGILPDVFCYNSLIIGFC-KAKRMEEARTYLMEMLERRLRPNAHTYGAF 527

Query: 213 -KGWSSVETS--GNNAENEMMGVSKEELYNLPTAEYV-HRRGGFLSRLLTVYHVAFHACA 268
             G+S        +   NEM+         + TA    H + G ++   +V+        
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR-R 586

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
            L+DVQ    L+  L ++                   G +     +F +       P A 
Sbjct: 587 VLQDVQTYSVLIHGLSRN-------------------GKMHEAFGIFSELQEKGLLPNAF 627

Query: 329 LYATLVEGAMF-GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            Y +L+ G+   G   K  QL ++  +        ++P + +  +L+    K+G    A 
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEMCIK------GINPDIVTYNILIDGLCKAGEIERAK 681

Query: 388 YIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLRGRP 439
            ++D ++ R +TP+     A  +G    + P    +L+      + LLRG P
Sbjct: 682 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL-----EEMLLRGVP 728



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 23/334 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R  A     Y+ ++  L           +  +M+++G++P   ++ +L+    K 
Sbjct: 405 DEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKE 464

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R++++    ++M+  G LPDV  YN LI    K K  ++A     EM +  ++PN  TY
Sbjct: 465 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 524

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              ++  + AG+++       +M + G   +   Y  LI  H  +    +  A  +   +
Sbjct: 525 GAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE--AFSVFRFI 582

Query: 210 EQSKGWSSVET--------SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261
              +    V+T        S N   +E  G+  E            +  G L    T   
Sbjct: 583 LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-----------LQEKGLLPNAFTYNS 631

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
           +   +C +  +V     LLE +     +PD+      I     +G+I+    +F+D    
Sbjct: 632 LISGSCKQ-GNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR 690

Query: 322 EKFPPAELYATLVEGAMFGYTPK-GMQLAQDTLV 354
              P    YA +V+G      P    QL ++ L+
Sbjct: 691 GLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 724



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 41/293 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     Q        + D+M+  G++    ++++L+ G  K  +++       +M 
Sbjct: 314 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 373

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   Y+ LI    + +N  +A  + +EMKK ++ P   TY  ++N     G L 
Sbjct: 374 EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQ 433

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
              AI+R+M   G   +   Y  L+TAH  K  R +++   +  + EQ            
Sbjct: 434 GTNAILREMVMNGLKPNAVVYTTLMTAHA-KEGRVEESRMILERMREQ------------ 480

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                                      G L  +     +    C   +  +A   L+EML
Sbjct: 481 ---------------------------GILPDVFCYNSLIIGFCKAKRMEEARTYLMEML 513

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           ++ R  P+ +     I  Y  +G+++   + F + +     P   +Y  L+EG
Sbjct: 514 ER-RLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 565



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 1/162 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    +A  YN ++     + +F    D++ +M+  G   T   F++LI G  K 
Sbjct: 720 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKS 778

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +LQ+     ++M    F+P+   Y  LI    K     +A R++ EM++  V P  +TY
Sbjct: 779 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTY 838

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             LL+     G +  V A+  +M A G   DK  Y  +I A+
Sbjct: 839 TSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAY 880



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 128/339 (37%), Gaps = 37/339 (10%)

Query: 2   RLLQ-----SIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRR 56
           R+LQ     S+  H  S  G +   F + S    E   +    NA  YN++++    Q  
Sbjct: 586 RVLQDVQTYSVLIHGLSRNGKMHEAFGIFS----ELQEKGLLPNAFTYNSLISGSCKQGN 641

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
                 + ++M + G+ P    ++ LI G  K   ++      D ++  G  P+   Y  
Sbjct: 642 VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAA 701

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           ++    K KN   A ++ EEM    V P+   Y  +LN C    + +    + ++M   G
Sbjct: 702 MVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG 761

Query: 177 AGLDKFCYAGLITAH--TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
                  +  LI  +  + K+  A+    ++IE        +      +N +  MMG +K
Sbjct: 762 FA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAK 820

Query: 235 ------EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288
                 +E   +PTA+               Y    H    + ++  +  L E +     
Sbjct: 821 RLWLEMQERNVMPTAK--------------TYTSLLHGYHNIGNMSEVSALFEEMVAKGI 866

Query: 289 SPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            PD   Y VM  I  Y   G++    K+ +D I  +  P
Sbjct: 867 EPDKMTYYVM--IDAYCREGNVMEACKL-KDEILVKGMP 902



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 164/442 (37%), Gaps = 87/442 (19%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           T+A   E        NA  Y T++T+   + R    R + + M   G+ P    ++SLI+
Sbjct: 435 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLII 494

Query: 85  GTMKGSRLQD--TFFFR---------------------------------DQMKANGFLP 109
           G  K  R+++  T+                                    ++M + G LP
Sbjct: 495 GFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLP 554

Query: 110 DVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           +V +Y  LI   G CK  N  +A  +F  +    V  + QTY  L++  +  G++   + 
Sbjct: 555 NVGIYTALIE--GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 612

Query: 168 IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227
           I  ++   G   + F Y  LI+    +     D A++++E                  E 
Sbjct: 613 IFSELQEKGLLPNAFTYNSLISGSCKQ--GNVDKASQLLE------------------EM 652

Query: 228 EMMGVSKEEL-YN-----LPTAEYVHRRGGFL----SRLLTVYHVAFHA-----CAELKD 272
            + G++ + + YN     L  A  + R          R LT   V + A     C     
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 712

Query: 273 VQAMETLLEMLKKDRKSPDVYI--VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             A + L EML +    PD +I  V+ N  C       +    +F++ +  + F     +
Sbjct: 713 TAAFQLLEEMLLRG-VPPDAFIYNVILNFCC--KEEKFEKALDLFQEML-EKGFASTVSF 768

Query: 331 ATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
            TL+E    GY   G +Q A   L  M  +     P   +   L+    K+G    A  +
Sbjct: 769 NTLIE----GYCKSGKLQEANHLLEEMIEKQFI--PNHVTYTSLIDHNCKAGMMGEAKRL 822

Query: 390 WDLMQARKITPSLPAVEAYYNG 411
           W  MQ R + P+     +  +G
Sbjct: 823 WLEMQERNVMPTAKTYTSLLHG 844



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/304 (18%), Positives = 120/304 (39%), Gaps = 11/304 (3%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    +   Y+ ++  L+   +      ++ ++   G+ P    ++SLI G+ K   +  
Sbjct: 585 RRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDK 644

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                ++M   G  PD+  YN LI    K    ++A  +F++++   + PN  TY  +++
Sbjct: 645 ASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD 704

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQS 212
               +      + ++ +M   G   D F Y  ++       K  +A D   +++E     
Sbjct: 705 GYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE----- 759

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
           KG++S   S N          K +  N    E + ++  F+   +T   +  H C     
Sbjct: 760 KGFAST-VSFNTLIEGYCKSGKLQEANHLLEEMIEKQ--FIPNHVTYTSLIDHNCKAGMM 816

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
            +A    LEM +++   P        +  Y + G++     +FE+ +     P    Y  
Sbjct: 817 GEAKRLWLEMQERN-VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYV 875

Query: 333 LVEG 336
           +++ 
Sbjct: 876 MIDA 879



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 135/349 (38%), Gaps = 17/349 (4%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  G+ P    +  LI G     R ++      +M   G  P+   YN LI    +  +
Sbjct: 267 MVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGD 326

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            +QA RI +EM    ++ N   +  LLN    AG+++    I+++M   G   D   Y+ 
Sbjct: 327 IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSL 386

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVET--SGNNAENEMMGVSKEELYNLPTAE 244
           LI  H     R  + A +  EL+++ K      T  + +   N +      +  N    E
Sbjct: 387 LIEGHC----RGQNMA-RAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILRE 441

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
            V      L     VY     A A+   V+    +LE +++    PDV+     I  +  
Sbjct: 442 MVMNG---LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCK 498

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFL 363
           +  ++       + +     P A  Y   ++    GY+  G M++A      M S  +  
Sbjct: 499 AKRMEEARTYLMEMLERRLRPNAHTYGAFID----GYSKAGEMEIADRYFNEMLSCGVL- 553

Query: 364 SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
            P +G    L+    K G  T A  ++  + +R++   +       +GL
Sbjct: 554 -PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGL 601


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L   +R     D+Y +M++ G+ P    +++LI G      L++ F   ++MK
Sbjct: 236 YTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK 295

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  +N LI   GK    D+AI +FEEMK   + PN  TY  L++       L+
Sbjct: 296 LKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLE 355

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              A+ + M   G   D + Y  L+ A
Sbjct: 356 RAIALCKKMKEQGIQPDVYSYTILLDA 382



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 4/162 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +  + N   YNT++              + ++M L  + P    F+ LI    K  
Sbjct: 258 EMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEG 317

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +     ++MK     P++  Y  LI   G CKN   ++AI + ++MK+  ++P+  +
Sbjct: 318 KIDEAISLFEEMKHKNMFPNIVTYTSLID--GLCKNHHLERAIALCKKMKEQGIQPDVYS 375

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  LL+A    G+L+      + +   G  L+   Y  +I  
Sbjct: 376 YTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMING 417



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 2/176 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +N   +   +N ++ +L  + +      ++++M    + P    + SLI G  K  
Sbjct: 293 EMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNH 352

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L+       +MK  G  PDV  Y  L+    K    + A + F+ +       N +TY 
Sbjct: 353 HLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYN 412

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            ++N    AG    V  +   M   G   D   +  +I A   K    +D A K +
Sbjct: 413 VMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEK--DENDKAEKFL 466



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/159 (18%), Positives = 61/159 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +++       N    N ++              V+ +++  G  P     ++LI G    
Sbjct: 117 KQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFC 176

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++   +F D++ A GF  D   Y  LI+   K   +    R+  +++ + VKP+   Y
Sbjct: 177 GEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMY 236

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +++      ++     +  +M   G   + F Y  LI
Sbjct: 237 TTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLI 275



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 63/157 (40%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R Y  +A   NT++  L            +D ++  G Q  +  + +LI G  K    +
Sbjct: 156 KRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETK 215

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +++ +   PDV +Y  +I    K K    A  ++ EM    + PN  TY  L+
Sbjct: 216 AVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLI 275

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                 G L   ++++ +M       D + +  LI A
Sbjct: 276 YGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDA 312



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 103/273 (37%), Gaps = 6/273 (2%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M+L    P    F +++   +K            Q ++NG  P++   N LI+    
Sbjct: 81  FNRMLLMRPPPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCH 140

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             +   A  +F  + K    P+  T   L+      G++         + A G  LD+  
Sbjct: 141 LAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVS 200

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
           Y  LI    N + +A +T   +  L+ + +G  SV+         +  + K +       
Sbjct: 201 YGTLI----NGLCKAGETKA-VARLLRKLEG-HSVKPDVVMYTTIIHCLCKNKRVGDACD 254

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
            Y       +S  +  Y+   +    + +++   +LL  +K    +PDVY     I    
Sbjct: 255 LYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALG 314

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             G ID    +FE+      FP    Y +L++G
Sbjct: 315 KEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDG 347


>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 484

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T+   +  + RF + +  ++ M+ +G++PTR  F+ +I G     +++    F D MK
Sbjct: 118 YDTLFKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  D+A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPGLCN 267



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 19/202 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      ++   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------DDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+    + E + K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAGLITA 190
           Y    +   ++ L++     G LD    +++ M      T A   G  ++ FC A     
Sbjct: 285 YIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAD---Q 341

Query: 191 HTNKIPRADDTATKIIELVEQS 212
           H   +   D    K I L  QS
Sbjct: 342 HDKAVKLLDKLIEKDIILRPQS 363


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++T+++   + RR  L    + +M+  G+ P     +SLI    K           DQM 
Sbjct: 132 FSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMS 191

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  +N LI  CG+  + D+A ++F  + +  + PN +T+  L+++ A  GQ+D
Sbjct: 192 RYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVD 251

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
             ++ +++M A G   ++  Y+ LI A
Sbjct: 252 EAFSWLQEMRARGLEPNRVTYSALINA 278



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 1/143 (0%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M   G++P R  + +LI    +  +L   F   D+M   G  P+V  +  LI  CGK K
Sbjct: 259 EMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGK 318

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
             + + ++F+EM++    PNG T   L++AC  A +LD  +A++  M   G    +  Y 
Sbjct: 319 ELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYT 378

Query: 186 GLITAHTNKIPRADDTATKIIEL 208
            L+T    ++ +AD     + EL
Sbjct: 379 SLLT-QCARLGQADRAGIVLDEL 400



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLI--VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
            Y+ M+   ++PT   F +LI   G  +  RL + FF R+ ++A G  PDV   N LI+ 
Sbjct: 116 AYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFF-REMLEA-GITPDVQAINSLINA 173

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  + DQA+++F++M +Y V P+  T+  L++AC  AG +D    +   ++ AG   +
Sbjct: 174 FAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPN 233

Query: 181 KFCYAGLITAH 191
              ++ LI +H
Sbjct: 234 DRTFSALIHSH 244



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 63/133 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++ +          R V+  +   G+ P    F +LI       ++ + F +  +M+
Sbjct: 202 FNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMR 261

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  P+   Y+ LI+ CG+     +A +  +EM    ++PN  T+  L++AC    +L+
Sbjct: 262 ARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELE 321

Query: 164 PVYAIVRDMTAAG 176
             + + ++M   G
Sbjct: 322 WSFKLFKEMRERG 334



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   Y+ ++ +     +        D+M   G++P    + +LI    KG
Sbjct: 258 QEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKG 317

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+ +F    +M+  G +P+    + L+  C K    D A  + E M    ++P   TY
Sbjct: 318 KELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTY 377

Query: 150 VCLLNACAAAGQLD 163
             LL  CA  GQ D
Sbjct: 378 TSLLTQCARLGQAD 391



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT--AAGAGL--DKFCYAGLI 188
           +F+EM+   V+P+ + Y  L+N CA  G+ D    +VR M     G GL  D   Y  LI
Sbjct: 881 VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 189 TAHTNKIPRADDTATKIIELVEQ 211
            A    +P   + A +I   ++Q
Sbjct: 941 KAAARAVPPRVEEAEEIFATMQQ 963



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 77  DLFHSLIVGTM-KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
           +L +S ++G   +  +L   F     M+  G  P    Y  L+ VC   ++S  A+ +FE
Sbjct: 614 ELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFE 673

Query: 136 EMKKYEVKPNGQTYVCLLNA 155
            M+   V+P  ++Y  LL A
Sbjct: 674 AMETEGVRPGVRSYTSLLKA 693



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 42/100 (42%)

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+ D     + M A    P +  ++ LIS  G C+    A R F EM +  + P+ Q   
Sbjct: 109 RIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAIN 168

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L+NA A AG  D    +   M+  G       +  LI A
Sbjct: 169 SLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDA 208



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           L+ + G+    D A ++ E M +    P+G+T++ LLNA   AG LD    ++    A G
Sbjct: 548 LLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEG 607

Query: 177 AG--LDKFCYAGLITA--HTNKIPRA 198
            G  +++  Y+ L+ A     K+ RA
Sbjct: 608 HGSEINELTYSALLGACGRAKKLARA 633



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           R + + +G   +   Y+ L+  CG+ K   +A RI + M++  VKP   TY+ L+  C
Sbjct: 602 RSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVC 659


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YNTV+++     +      VY+ M+  GV+P+   + +LI    K  +++     FRD +
Sbjct: 108 YNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMI 167

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +  G   +V  Y+ LIS C K    + A+ +F +M K   KPN  TY  L+ AC+  G  
Sbjct: 168 R-RGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHW 226

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +    +   M   G   D   Y GLITA+
Sbjct: 227 EKASELFEQMQTQGCKPDSITYCGLITAY 255



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   Y+ ++          L +DVY  M+ +G  P    ++ LI       
Sbjct: 25  EMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVEASKR 84

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +  +       +  +G   +V  YN +IS C K    +QA++++E+M    VKP+  TY 
Sbjct: 85  KTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYT 144

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L++A    GQ++    I RDM   G   +   Y+ LI+A
Sbjct: 145 ALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISA 184



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A+ Y  ++++   + +     D++ DM+  G +     + SLI    K  R +      
Sbjct: 139 SATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELF 198

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M      P+V  YN LI+ C    + ++A  +FE+M+    KP+  TY  L+ A    
Sbjct: 199 SKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERG 258

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           GQ          M + G   D   +  L+
Sbjct: 259 GQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++    S+R+    R +   ++  G+Q     ++++I    K  + +      
Sbjct: 69  NLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVY 128

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M A G  P    Y  LIS  GK    ++A+ IF +M +   + N  TY  L++AC  A
Sbjct: 129 EKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKA 188

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+ +    +   M       +   Y  LI A
Sbjct: 189 GRWEMALELFSKMHKENCKPNVVTYNSLIAA 219



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/120 (20%), Positives = 53/120 (44%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR    N   Y++++++     R+ +  +++  M  +  +P    ++SLI     G   +
Sbjct: 168 RRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWE 227

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 +QM+  G  PD   Y  LI+   +     +A++ FE+M+     P+   +  L+
Sbjct: 228 KASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 32/330 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD----------------------DM 67
           +E AR   A+ A E+   V +L        L DVY                       DM
Sbjct: 103 KELARTGLAHRAQEFFDHVLALGDSTEAARLADVYTYTAAISICVSAQQLERALELSADM 162

Query: 68  MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
              GVQ       +L+   +K  +L+      + M+ +G +P+V  YN LI V GK    
Sbjct: 163 QRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQW 222

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
           +QA+++   MK   ++P  +TY  L+ AC  +GQ      +  +M AAG  L+   Y  L
Sbjct: 223 EQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNAL 282

Query: 188 ITAHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
           I+AH+    +P+  DT     ++V+Q    S +  S   +  E  G  +  L        
Sbjct: 283 ISAHSKAGDLPQVLDT---YRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLK 339

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
            + R   ++     ++    ACA+    +    L E++++   +PDV      I  Y   
Sbjct: 340 DNCRPNVIT-----FNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYTALISAYERG 394

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           G      + F+        P + +Y  +++
Sbjct: 395 GKWQLALQAFQAMQAKGCKPDSIVYNAIID 424


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 112/283 (39%), Gaps = 26/283 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD + SLI    +            +M   G  PD++ YN ++S   
Sbjct: 444 VFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALA 503

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +QA ++F EM+  + +P+  +Y  LL+A A A +LD + ++  D+ A        
Sbjct: 504 RGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNG 563

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGW------SSVETSGNNAE----NEMMGV 232
               L+  ++ K+    DT    +EL  +          + +   G N       E++ +
Sbjct: 564 LVKTLVLVNS-KVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSL 622

Query: 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292
            KE   NL TA                Y+   H  + L D +  E +L  +K  R  PD 
Sbjct: 623 MKESSINLSTA---------------TYNSLMHMYSRLGDCEKCENILTEIKSSRARPDR 667

Query: 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           Y     I  Y   G +    ++F +  CS   P    Y   V+
Sbjct: 668 YSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVK 710



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 18/299 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++    +  +     V+D+M   G +P +   +SL+    K  R  +      +M+
Sbjct: 250 YNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEME 309

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  YN LIS   K    ++A ++ EEM+   ++P+  TY  L++    AG++D
Sbjct: 310 QGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKID 369

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIE--LVEQSKGWSSVE 219
                  +M   G   +   Y  LI  H    K P       +I     V     W+++ 
Sbjct: 370 AAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLL 429

Query: 220 T--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
                N  + E+ GV KE    +  + YV  R  ++S +      ++  C      QAME
Sbjct: 430 AVFGQNGLDTEVSGVFKE----MKKSGYVPERDTYVSLI-----SSYSRCGLFD--QAME 478

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               M++     PD+      +      G  +   K+F +    +  P    Y++L+  
Sbjct: 479 IYKRMIEAG-IHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHA 536



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M  DG+   R  +++LI    + +  ++     D+M+A GF PD    N L+ V GK 
Sbjct: 236 DSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKA 295

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +  D+AI + +EM++    P+  TY  L+++    G L+    +  +M   G   D   Y
Sbjct: 296 RRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITY 355

Query: 185 AGLIT 189
             L++
Sbjct: 356 TTLVS 360



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIR 132
           P    + +LI    + SR +D      +M ANG  P +  YN ++ V  K      + + 
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           + + M+K  +  +  TY  L++ C           +  +M AAG   DK     L+  + 
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293

Query: 193 NKIPRADDTATKIIELVEQSKGWSSVET 220
               R  D A  +++ +EQ     SV T
Sbjct: 294 KA--RRYDEAIGVLKEMEQGGCPPSVVT 319



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/109 (20%), Positives = 51/109 (46%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P R  ++++I    +  ++++      +MK +G +PD+  YN  +         ++AI 
Sbjct: 664 RPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAID 723

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           +   M  +  KPN +TY  +L    + G++    + + ++     G+ K
Sbjct: 724 LVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPELHPGISK 772


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 131/321 (40%), Gaps = 23/321 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   R+  + +   YN ++ +   + +FF   ++YD+M+  G+ P+   + S+I G  K 
Sbjct: 280 EMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +RL         M   G  PD+  +N LI+   + K  D  I++  EM +  +  N  TY
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITY 399

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAG-----LITAHTNKI 195
             L++     G L+    ++++M ++G           LD  C  G     L      + 
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459

Query: 196 PRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
            + D  A+     VE      ++  SG   E + +    EELY     E  HR  G +  
Sbjct: 460 SKMDIDASHPFNGVEPDVQTYNILISGLINEGKFL--EAEELYE----EMPHR--GIVPD 511

Query: 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
            +T Y+   H   +   +     + + +     SP+V      I  Y  +G +D+G ++F
Sbjct: 512 TIT-YNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 570

Query: 316 EDYICSEKFPPAELYATLVEG 336
            +         A  Y TL+ G
Sbjct: 571 CEMGRRGIVANAITYITLIHG 591



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 2/176 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    ++S+I G  K SRL +     
Sbjct: 476 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMF 535

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M +  F P+V  +  LI+   K    D  + +F EM +  +  N  TY+ L++     
Sbjct: 536 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKV 595

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
           G ++    I ++M A+G   D      ++T   +K       A  ++E ++ S G+
Sbjct: 596 GNINGALDIFQEMMASGVYPDTITIRNMLTGLWSK--EELKRAVAMLEDLQMSVGY 649



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 58/143 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    +   YN+V+  L  Q R      ++D M      P    F +LI G  K 
Sbjct: 501 EEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 560

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ D      +M   G + +   Y  LI    K  N + A+ IF+EM    V P+  T 
Sbjct: 561 GRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITI 620

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
             +L    +  +L    A++ D+
Sbjct: 621 RNMLTGLWSKEELKRAVAMLEDL 643



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D M+ DG+QP +  + +++ G  K G  +      
Sbjct: 178 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 237

Query: 99  RDQMKANGFLPDVAVYNYLISVC---GKCKNS--DQAIRIFEEM-KKYEVKPNGQTYVCL 152
           R   + +   P+V ++      C   G C +    +A ++ +EM ++ ++ P+  TY  L
Sbjct: 238 RKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNAL 297

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +NA    G+      +  +M   G       Y+ +I
Sbjct: 298 INAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMI 333


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +N   +   + ++V S+    R      VY +M   G++P+  ++ SLI   +K 
Sbjct: 256 QEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKA 315

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+      D+MK  GF P+  +Y  ++    K    + A+ +F +M+K    P   TY
Sbjct: 316 GKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTY 375

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            CLL   +A+GQ+D    +   MT AG       Y  L+T   NK  +  D A K+  L+
Sbjct: 376 SCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANK--KLVDVAAKV--LL 431

Query: 210 EQSKGWSSVETSGNN 224
           E      SV+ S ++
Sbjct: 432 EMKAMGFSVDVSASD 446



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S Y  ++ SL    R      ++ +M    ++P+  +F SL+    K  RL  +    
Sbjct: 231 DGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVY 290

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  P   +Y  LI    K    + A+RI++EMKK   +PN   Y  ++ + A +
Sbjct: 291 MEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKS 350

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           G+L+   ++  DM  AG       Y+ L+  H+
Sbjct: 351 GKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHS 383



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + + YN+++T   ++   +   +VY+ M   G       +  +I    K  RL   F   
Sbjct: 196 DTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLF 255

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK     P   V+  L+   GK    D +++++ EM+ + ++P+   YV L+ +   A
Sbjct: 256 QEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKA 315

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           G+L+    I  +M  AG   +   Y  ++ +H
Sbjct: 316 GKLETALRIWDEMKKAGFRPNYGLYTMVVESH 347



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 61/146 (41%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N VV  L    +  +    +  +   G +     ++SLI   +        F   + M+A
Sbjct: 166 NQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEA 225

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G L D + Y  +I    K    D A ++F+EMK+  ++P+   +  L+++   AG+LD 
Sbjct: 226 AGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDT 285

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITA 190
              +  +M   G       Y  LI +
Sbjct: 286 SMKVYMEMQGFGLRPSATMYVSLIES 311


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 160/380 (42%), Gaps = 69/380 (18%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQ 101
           YNTV++ L         R++ ++M+  G +   D+  +++LI    + SR+++   FR++
Sbjct: 135 YNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREK 194

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           MKA G  PDV   N L+S  G CK+ D  +A+ I + MK     P+  TY  +++A   A
Sbjct: 195 MKAAGINPDVLTCNILVS--GICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVA 252

Query: 160 GQLDPVYAIVRDMTAA------GAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           G++     I++ M+ +         LD FC AG+       +PRA       +E++E+  
Sbjct: 253 GKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGM-------LPRA-------LEVLEE-- 296

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
                             + +E +  LP               +  Y +  +    +  V
Sbjct: 297 ------------------MCRENI--LPD--------------VITYTILVNGLCRVGQV 322

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           Q    LLE + +    PDV      +     SG+I+  HK+ ++           +Y++L
Sbjct: 323 QVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSL 382

Query: 334 VEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
           V     GY   G +  A++ L  M S N+   P + +  +++    K G  + A  +   
Sbjct: 383 VS----GYCRAGNVHKAREILAEMVSINMV--PPLFTYNIVLGGLIKDGSISKAVSLISD 436

Query: 393 MQARKITPSLPAVEAYYNGL 412
           + AR   P +       +GL
Sbjct: 437 LVARGYVPDVVTYNTLIDGL 456



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 2/156 (1%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y ++   YN ++  L      F    VY D++  G  P    F  LI G  K  +     
Sbjct: 23  YKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRAL 82

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            F   +      PDV ++N LI    K  N DQA+++FE M+   VKP   TY  +++  
Sbjct: 83  EFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGL 142

Query: 157 AAAGQLDPVYAIVRDMTAAG--AGLDKFCYAGLITA 190
             +G L+    ++ +M   G  +  D   Y  LI A
Sbjct: 143 CKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINA 178



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 4/158 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L           +  D++  G  P    +++LI G  K +R+++     D+M 
Sbjct: 414 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 473

Query: 104 ANGFLP-DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           + G  P DV + + +  +C +    D A  +  EM +    PN   Y  L++    + ++
Sbjct: 474 SRGCFPNDVTLGSVVFGLC-RVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 532

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
           D    ++  M   G  LD F Y  LI   +H  ++  A
Sbjct: 533 DDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEA 570



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 58/142 (40%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R Y  +   YNT++  L    R     D+ D+M   G  P      S++ G  +  R+ D
Sbjct: 440 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDD 499

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +    +M      P+V VY  LI    K    D A  + + M+   V  +   Y  L+ 
Sbjct: 500 AWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIV 559

Query: 155 ACAAAGQLDPVYAIVRDMTAAG 176
           + +  G++    A+  +M A G
Sbjct: 560 SMSHGGRVAEAMAMYDEMVARG 581



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           EE  R N   +   Y  +V  L      Q  F+LL    ++++  G  P    + SL+ G
Sbjct: 295 EEMCRENILPDVITYTILVNGLCRVGQVQVAFYLL----EEIVRQGYIPDVIAYTSLVDG 350

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
             K   +++      +M   G    V +Y+ L+S   +  N  +A  I  EM    + P 
Sbjct: 351 LCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPP 410

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTAT 203
             TY  +L      G +    +++ D+ A G   D   Y  LI      N++  A D A 
Sbjct: 411 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLAD 470

Query: 204 KI 205
           ++
Sbjct: 471 EM 472



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 1/173 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E + R        Y+++V+           R++  +M+   + P    ++ ++ G +K 
Sbjct: 365 KEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKD 424

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +         + A G++PDV  YN LI    K     +A  + +EM      PN  T 
Sbjct: 425 GSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTL 484

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
             ++      G++D  +++V +M+      +   Y  LI     K  R DD  
Sbjct: 485 GSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLC-KSDRMDDAC 536



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 119/282 (42%), Gaps = 24/282 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++             +V ++M  + + P    +  L+ G  +  ++Q  F+  +++ 
Sbjct: 274 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 333

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G++PDV  Y  L+   G CK+   ++A ++ +EM     +     Y  L++    AG 
Sbjct: 334 RQGYIPDVIAYTSLVD--GLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGN 391

Query: 162 LDPVYAIVRDMTAAGAGLDKFCY----AGLITAHTNKIPRADDTATKIIELVEQ--SKGW 215
           +     I+ +M +       F Y     GLI          D + +K + L+    ++G+
Sbjct: 392 VHKAREILAEMVSINMVPPLFTYNIVLGGLIK---------DGSISKAVSLISDLVARGY 442

Query: 216 SSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
                + N   + +   ++  E  +L  A+ +  RG F +  +T+  V F  C   +   
Sbjct: 443 VPDVVTYNTLIDGLCKANRVREACDL--ADEMASRGCFPND-VTLGSVVFGLCRVGRVDD 499

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           A   ++EM +K R +P+V +    I     S  +D+   V +
Sbjct: 500 AWSLVVEMSRK-RHAPNVVVYTSLIDGLCKSDRMDDACMVLD 540



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 35/80 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E +R+ +A N   Y +++  L    R      V D M   GV      +  LIV    G 
Sbjct: 506 EMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGG 565

Query: 91  RLQDTFFFRDQMKANGFLPD 110
           R+ +     D+M A GFLPD
Sbjct: 566 RVAEAMAMYDEMVARGFLPD 585


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 146/360 (40%), Gaps = 41/360 (11%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           ++R  KS  G L   FF      ++      + +   YN V+  L  +      R ++++
Sbjct: 223 LHRLSKSSKGGLALSFF------KDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEE 276

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G++P    ++SLI G  K   L       ++MK  G  PDV  YN LI+   K + 
Sbjct: 277 MKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFER 336

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             QA      MK+  ++PN  TY  L++A   AG L        DM   G   ++F Y  
Sbjct: 337 IPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTS 396

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-------------AENEMMGVS 233
           LI           D   KI +L E  K  S ++ +G N              E+  M  +
Sbjct: 397 LI-----------DANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREA 445

Query: 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ-AMETLLEMLKKDRKSPDV 292
           +E    L  A +   +         +Y   FH   + K ++ AM+ L EM KK+ K PD+
Sbjct: 446 EELFGALLKAGWTLNQ--------QIYTSLFHGYIKAKMMEKAMDILEEMNKKNLK-PDL 496

Query: 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQLAQD 351
            +    I       +I++   V  + +       + +Y TL++     G T + + L Q+
Sbjct: 497 LLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQE 556



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           G++ T   +  LI G  K   +Q    + D M  NG  P++ +Y  LI   G CKN   +
Sbjct: 561 GIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID--GLCKNDCLE 618

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A  +F EM    + P+   Y  L++     G      ++   M   G  LD   Y  LI
Sbjct: 619 EAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLI 678



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 61/159 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++N   +   Y T +  L  Q        V  +MM  G+     ++ +LI    K 
Sbjct: 485 EEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKV 544

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  +      +M+  G    V  Y  LI    K     QA+R F+ M +  ++PN   Y
Sbjct: 545 GKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIY 604

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++       L+    +  +M   G   DK  Y  LI
Sbjct: 605 TALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLI 643



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 60/147 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +   R     N   Y  ++  L         ++++++M+  G+ P + ++ SLI G MK 
Sbjct: 590 DHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKH 649

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
               +    R++M   G   D+  Y  LI    +      A  + +EM +  + P+    
Sbjct: 650 GNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLC 709

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +CLL      G ++   A+  DM   G
Sbjct: 710 ICLLRKYYELGDINEALALHDDMARRG 736



 Score = 38.5 bits (88), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 52/113 (46%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           +D M  +G+QP   ++ +LI G  K   L++     ++M   G  PD  VY  LI    K
Sbjct: 589 FDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMK 648

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
             N  +A+ +   M +  ++ +   Y  L+   +  GQ+    +++ +M   G
Sbjct: 649 HGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKG 701


>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 481

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + RF + +  ++ M+ +G++PTR  F+ +I G     ++     F + MK
Sbjct: 118 YDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+ C + K  D+A + F EMK   ++P   TY  L+    +  Q+ 
Sbjct: 178 SREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVH 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPGLCN 267



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+    + E + K
Sbjct: 225 TLIKGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAGLITA 190
           Y    +   ++ L+++   AG LD    +++ M      T A   G  ++ FC AG    
Sbjct: 285 YIAPKDNSIFMRLISSQCEAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAG---Q 341

Query: 191 HTNKIPRADDTATKIIELVEQS 212
           H   +   D    K I L  QS
Sbjct: 342 HDRAVKLLDKLIEKDIILRPQS 363


>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 484

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + RF + +  ++ M+ +G++PTR  F+ LI G     ++     F + MK
Sbjct: 118 YDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVDTANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+ C + K  D+A + F EMK   ++P   +Y  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +V +M   G   +   Y+ L+
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLL 262



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+    + E + K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQL----DPVYAIVRDMTAAGAG-----LDKFCYAGLITA 190
           Y    +   ++ L+++   AG L    D + A++R      AG     ++ FC AG    
Sbjct: 285 YIAPKDNSIFMRLISSQCEAGNLGAAADVLKAMIRLSVPTEAGHYGVLIENFCKAG---Q 341

Query: 191 HTNKIPRADDTATKIIELVEQS 212
           H   +   D    K I L  QS
Sbjct: 342 HDKAVKLLDKLIEKDIILRPQS 363


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 4/195 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +N   +   + ++V S+    R      VY +M   G++P+  ++ SLI   +K 
Sbjct: 343 QEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKA 402

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+      D+MK  GF P+  +Y  ++    K    + A+ +F +M+K    P   TY
Sbjct: 403 GKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTY 462

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            CLL   +A+GQ+D    +   MT AG       Y  L+T   NK  +  D A K+  L+
Sbjct: 463 SCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANK--KLVDVAAKV--LL 518

Query: 210 EQSKGWSSVETSGNN 224
           E      SV+ S ++
Sbjct: 519 EMKAMGFSVDVSASD 533



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S Y  ++ SL    R      ++ +M    ++P+  +F SL+    K  RL  +    
Sbjct: 318 DGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVY 377

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  P   +Y  LI    K    + A+RI++EMKK   +PN   Y  ++ + A +
Sbjct: 378 MEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKS 437

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           G+L+   ++  DM  AG       Y+ L+  H+
Sbjct: 438 GKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHS 470



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + + YN+++T   ++   +   +VY+ M   G       +  +I    K  RL   F   
Sbjct: 283 DTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLF 342

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK     P   V+  L+   GK    D +++++ EM+ + ++P+   YV L+ +   A
Sbjct: 343 QEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKA 402

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           G+L+    I  +M  AG   +   Y  ++ +H
Sbjct: 403 GKLETALRIWDEMKKAGFRPNYGLYTMVVESH 434



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 61/146 (41%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N VV  L    +  +    +  +   G +     ++SLI   +        F   + M+A
Sbjct: 253 NQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEA 312

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G L D + Y  +I    K    D A ++F+EMK+  ++P+   +  L+++   AG+LD 
Sbjct: 313 AGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDT 372

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITA 190
              +  +M   G       Y  LI +
Sbjct: 373 SMKVYMEMQGFGLRPSATMYVSLIES 398


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 2/177 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R +    + + ++V S+    R      VY +M   G +P   ++ SLI   +K 
Sbjct: 253 QEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPPTIYVSLIESYVKS 312

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+      D+M+  GF P+  +Y  +I    K    + A+  F +M+K    P   TY
Sbjct: 313 GKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTFLDMEKAGFLPTPSTY 372

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            CLL   AA+GQ+DP   +   MT AG       Y  L+T   NK  +  D A KI+
Sbjct: 373 ACLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANK--KLVDVAAKIL 427



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 69/154 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN+++T   ++   +   ++Y+ M   G       +  +I    K  RL   F   
Sbjct: 193 DTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELMIPNLAKSGRLDAAFKLF 252

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK  GF P + V+  L+   GK    D A++++ EM+ Y  KP    YV L+ +   +
Sbjct: 253 QEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPPTIYVSLIESYVKS 312

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           G+L+    +  +M  AG   +   Y  +I +H  
Sbjct: 313 GKLETALRLWDEMRMAGFRPNFGLYTLIIESHAK 346



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 59/149 (39%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L    +  +    +  ++  G +   + ++SLI   +        F   + M+ 
Sbjct: 163 NRVIRYLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEK 222

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G   D + Y  +I    K    D A ++F+EMK    +P    +  L+++   AG+LD 
Sbjct: 223 AGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDS 282

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
              +  +M   G       Y  LI ++  
Sbjct: 283 AMKVYMEMRGYGYKPPPTIYVSLIESYVK 311


>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
          Length = 665

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 141/306 (46%), Gaps = 15/306 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TV+ +LT Q+RF  +  +   +  +G++P    F+ +I    +   +++      +M+
Sbjct: 106 YTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMR 165

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
             G  P  + +N LI   G     +++ ++ E M + E +KP+ +TY  L+ A      +
Sbjct: 166 EKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKPDDRTYNILVQAWCNKNNI 225

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVEQSKGWSSVET 220
           +  + +V  M  AG   D   Y  +  A+     R  +T  A ++I  ++ +K   +V T
Sbjct: 226 EKAWGVVHRMVGAGLKPDVVTYNTIARAYA----RGKETSRAAELISQMQNNKVAPNVRT 281

Query: 221 SGNNAENEMMGVSKEELYNLPTA-EYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAMET 278
            G   +    G SKE   N+  A +++++  GF +   L +++       ++ D + ++ 
Sbjct: 282 CGIVVD----GYSKEG--NMADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDE 335

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
            L ++++    PDV      +  +  +G ++   ++F+D I S   P    ++ L +G +
Sbjct: 336 TLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYV 395

Query: 339 FGYTPK 344
               PK
Sbjct: 396 RAGEPK 401



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 2/111 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++ + +S        +++ DM+  G++P    F  L  G ++    +      + M 
Sbjct: 352 YSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAMA 411

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +G  P+V ++  +IS  C   K  D A+R+++ M + +V+PN  T+  L+
Sbjct: 412 THGAHPNVVMFTTIISGWCSAAKMED-ALRVYDRMCRMDVQPNLNTFETLI 461


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 128/319 (40%), Gaps = 36/319 (11%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A R+   +   ++T +++      +    ++Y +M   G++P    F +LI    KG ++
Sbjct: 55  AARSLRPDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQV 114

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
              F   ++M+A G + +V  +   IS C K  +  +A+++ EEM    ++PN Q Y   
Sbjct: 115 SKAFEVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAA 174

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           ++AC  A +  P   ++  MT      D   Y+ ++ A         + A +I + +++ 
Sbjct: 175 ISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGK--AGLWEPAARIFQKMKRE 232

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV---------- 262
                             G++  ++    T    ++R G  SR L V+ +          
Sbjct: 233 ------------------GLTP-DVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNV 273

Query: 263 -----AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
                A  ACA+  + +    LLE +K D+  PD       I      G  D G  + + 
Sbjct: 274 IAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQM 333

Query: 318 YICSEKFPPAELYATLVEG 336
               E  P    Y T+++ 
Sbjct: 334 LEEDEAQPNISTYCTVIKA 352



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 113/274 (41%), Gaps = 35/274 (12%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ------DTFFF---RDQMKANGFLPDVA 112
           +V   +  +G+ PTR  +++ +    +  R +      D+ F    R+++ A    PD  
Sbjct: 5   EVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPDTV 64

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            ++  IS C K     +A+ ++ EM+   ++PN  T+  L+ AC   GQ+   + +   M
Sbjct: 65  TFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERM 124

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ--SKGWSSVETSGNNAENEMM 230
            A G   + + +    TA  +   +  D   + ++L+E+  +KG         N +    
Sbjct: 125 QARGIVGNVYTF----TAAISSCEKLGDW-QRALKLLEEMIAKGIQP------NLQAYSA 173

Query: 231 GVSKEELYNLPTAEYVHRRGGFLSRL--------LTVYHVAFHACAELKDVQAMETLLEM 282
            +S  E      A       G L R+        + VY     AC +    +    + + 
Sbjct: 174 AISACE-----KAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQK 228

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           +K++  +PDV      I+ Y  +G+     +VF+
Sbjct: 229 MKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQ 262



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 12/180 (6%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTS----QRRFFLLRDVYDDMMLD 70
           GG + + F V     E    R    N   +   ++S       QR   LL    ++M+  
Sbjct: 111 GGQVSKAFEVF----ERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLL----EEMIAK 162

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+QP    + + I    K +  +      ++M      PD+ VY+ +++ CGK    + A
Sbjct: 163 GIQPNLQAYSAAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPA 222

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            RIF++MK+  + P+   Y  L+ A   AG+      + + M  AG   +   Y   I A
Sbjct: 223 ARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAA 282



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 55/120 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++ +      +    +V+  M   GV+P    +   I    K    + +    ++MK
Sbjct: 241 YSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMK 300

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+   PD   YN++IS   +    D  + + + +++ E +PN  TY  ++ AC   GQ +
Sbjct: 301 ADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNISTYCTVIKACGDNGQWE 360



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 66/161 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    N   Y+  +++            + + M  + ++P   ++ +++    K 
Sbjct: 157 EEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKA 216

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +       +MK  G  PDV  Y+ LI    +     +A+ +F+ M+K  V+PN   Y
Sbjct: 217 GLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAY 276

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              + ACA AG+      ++  M A     D   Y  +I+A
Sbjct: 277 TEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISA 317


>gi|307110398|gb|EFN58634.1| hypothetical protein CHLNCDRAFT_50458 [Chlorella variabilis]
          Length = 1505

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  YD M  DGVQP    F  LI    +   +          KA G  PD+ +Y+ +I  
Sbjct: 515 RSAYDKMRQDGVQPNARFFTELIRICGRAGDMAAAEVAWADAKAAGVAPDLILYSAMIDT 574

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           CGKCK++  A+R+F EMK+  V+P+  +Y  LL A     Q  P+
Sbjct: 575 CGKCKDAAAAMRVFGEMKRSRVRPDVVSYTSLLTALEGTAQAAPL 619



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           LL  V   M   GV P+     +L+   M+   +       D M+ N   P+V  Y  L+
Sbjct: 434 LLVQVLARMARIGVTPSPQSLTTLLQCFMRLGHVNVAHSVLDWMRRNNLEPNVYSYTALL 493

Query: 119 SVCGKCKNS------DQAIRI---FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           ++      S      +QA R    +++M++  V+PN + +  L+  C  AG +       
Sbjct: 494 ALPRHISESAAPRLLEQASRARSAYDKMRQDGVQPNARFFTELIRICGRAGDMAAAEVAW 553

Query: 170 RDMTAAGAGLDKFCYAGLI 188
            D  AAG   D   Y+ +I
Sbjct: 554 ADAKAAGVAPDLILYSAMI 572


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 132/331 (39%), Gaps = 18/331 (5%)

Query: 14  VGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG 71
           V G LG+  RF V      E +R     N   +NT++     +     +  V + M   G
Sbjct: 391 VLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCG 450

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           V+ +RD +++LI    +     + F   ++M + GF P +  YN L++V  +  +   A 
Sbjct: 451 VELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQ 510

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            I  +M+    KPN Q+Y  LL   A  G +  + AI  ++  +GA    +     +   
Sbjct: 511 SIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIA 570

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGV-SKEELYNLPTAEYV 246
             K  R D   T   E          V+  G N +    N M+ + +K  +Y+  T  + 
Sbjct: 571 NFKCRRLDGMETAFQE----------VKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFD 620

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK-SPDVYIVMQNIRCYLHS 305
             +   LS  L  Y+      A+  +    E +L  LK  +   PDV      I  +   
Sbjct: 621 SIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQ 680

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           G +    +V  + +     P A  Y TLV G
Sbjct: 681 GLVKEAQRVLSEMVADGMAPCAVTYHTLVGG 711



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQ-RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  R+  A     YN V+       R +  +  + D+M   GV+P      ++I    + 
Sbjct: 199 ELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRD 258

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + +   F + +KA G  P V  YN L+ V GK  N  +A+R+  EM++   +P+  TY
Sbjct: 259 GLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTY 318

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             L    A AG  +     +  M + G   + F Y  ++TA+ N
Sbjct: 319 NELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGN 362



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 120/304 (39%), Gaps = 36/304 (11%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M   G+ P    +++++       ++ +     DQMK  GF+P+V  YN ++ + GK 
Sbjct: 339 DTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKK 398

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
                 + +  EM +    PN  T+  +L  C   G  D V  ++  M + G  L +  Y
Sbjct: 399 SRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTY 458

Query: 185 AGLITAH------TNKIPRADD-----------TATKIIELVEQSKGWSSVETSGNNAEN 227
             LI A+      TN     ++           T   ++ ++ +   WS+ ++  +    
Sbjct: 459 NTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRT 518

Query: 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA----------------ELK 271
           +      E+ Y+L    Y   +GG ++ +  + +  + + A                + +
Sbjct: 519 KGFK-PNEQSYSLLLQCYA--KGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCR 575

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
            +  MET  + +K    +PD+ I    +  Y  +G      +VF+    S   P    Y 
Sbjct: 576 RLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYN 635

Query: 332 TLVE 335
           +L++
Sbjct: 636 SLMD 639



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/395 (19%), Positives = 157/395 (39%), Gaps = 34/395 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R +A     YN ++        +     V  +M  +G QP    ++ L     + 
Sbjct: 269 EDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARA 328

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              ++     D M + G LP+   YN +++  G     D+A+ +F++MKK    PN  TY
Sbjct: 329 GFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTY 388

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +L       +   +  ++ +M+ +G   ++  +  ++     +    +D  T+++E +
Sbjct: 389 NLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKR--GMEDYVTRVLEGM 446

Query: 210 EQSKGWSSVETSGNNAENEMMG--------VSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261
                   VE S  +  N ++          +  ++YN  T+       GF +  +T Y+
Sbjct: 447 RS----CGVELS-RDTYNTLIAAYGRCGSRTNAFKMYNEMTS------AGF-TPCITTYN 494

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED--YI 319
              +  +   D    ++++  ++     P+       ++CY   G++  G    E+  Y 
Sbjct: 495 ALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNV-AGIAAIENEVYG 553

Query: 320 CSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEK 379
               FP   +  TLV          GM+ A      + +R       + + +L + A  K
Sbjct: 554 SGAVFPSWVILRTLVIANFKCRRLDGMETA---FQEVKARGYNPDLVIFNSMLSIYA--K 608

Query: 380 SGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
           +G Y+ A  ++D ++   ++P L      YN L D
Sbjct: 609 NGMYSKATEVFDSIKRSGLSPDL----ITYNSLMD 639



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 46/113 (40%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++D+   G  P    +++L+    K     +      +M+ NG  PD   YN L     +
Sbjct: 268 FEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYAR 327

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
               ++A R  + M    + PN  TY  ++ A    G++D   A+   M   G
Sbjct: 328 AGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTG 380


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   YNT++  L    + +    + D M  +G +P+   F+ L+ G  K 
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKA 191

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +   F +QMKA GF P    YN LI+   + ++  +A R   +MK+  ++P   TY
Sbjct: 192 GKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTY 251

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+++ A    +   + I+  M  AG  +D   Y  L+ A
Sbjct: 252 TILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRA 292



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           +L+ G  KG  + +     D+M   G  P+   Y  L+         ++   +FEEM++ 
Sbjct: 43  ALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRG 102

Query: 141 EVKPNGQTYVCLLNACAAAGQLD---------PVYAIVRDMTAAGAGLDKFCYAG 186
            V+PN  TY CL+      G+ +         PV  IVR++ +    +   C  G
Sbjct: 103 GVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHG 157



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R V+D+M L G+ P    + +L+ G     + +  F   ++M+  G  P++  YN LI  
Sbjct: 58  RRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGE 117

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             +    ++A  +F+EM    +  N  +Y  L+      G+L
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKL 159



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           DV     L++ C K  +  +A R+F+EM    + PN  TY  L++     GQ +  +A+ 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 170 RDMTAAGAGLDKFCYAGLI 188
            +M   G   + + Y  LI
Sbjct: 97  EEMRRGGVEPNLYTYNCLI 115


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 18/291 (6%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           ++R  K+  G L R FF    GA        A     YN ++  +  +      R +++ 
Sbjct: 104 LHRLSKAGEGDLSRDFFRDMVGA------GIAPTVFTYNIMIGHVCKEGDMLTARSLFEQ 157

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G+ P    +++LI G  K   L ++    ++MK  G  PDV  YN LI+   K K 
Sbjct: 158 MKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKG 217

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A   F EMK  ++KPN  +Y  L++A    G +        DMT  G   ++F Y+ 
Sbjct: 218 MLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSS 277

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           LI A+  K     +      E++++    + V  +       + G+ +E + N   AE +
Sbjct: 278 LIDANC-KAGNLGEAFMLADEMLQEHVDLNIVTYT-----TLLDGLCEEGMMN--EAEEL 329

Query: 247 HRRGG--FLSRLLTVYHVAFHACAELKDV-QAMETLLEMLKKDRKSPDVYI 294
            R  G   ++  L  Y    H   +++ + +AME   EM +KD K PD+ +
Sbjct: 330 FRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIK-PDILL 379



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           G + T   F +LI G  K   +Q+  ++  +M  +   P+VAVY  LI   G CKN+   
Sbjct: 442 GTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALID--GLCKNNCIG 499

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            A ++F+EM+   + P+   Y  +++     G       +   M   G  LD + Y  L+
Sbjct: 500 DAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLV 559



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 40/218 (18%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   ++   N   Y+T++ +L  +    +    + DM   G+ P    + SLI    K  
Sbjct: 227 EMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAG 286

Query: 91  RLQDTFFFRDQMKAN-----------------------------------GFLPDVAVYN 115
            L + F   D+M                                      G  P++  Y 
Sbjct: 287 NLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYT 346

Query: 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
            LI    K ++ D+A+ +F EM++ ++KP+   +  ++    +  +L+    I+ +M  +
Sbjct: 347 ALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKES 406

Query: 176 GAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           G G +   Y  L+ A+     R     T+ I L+E+ +
Sbjct: 407 GIGANPVIYTTLMDAYFKAGNR-----TEAINLLEEMR 439



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 15/184 (8%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            G LG  F +    A+E  + +   N   Y T++  L  +       +++  M   GV P
Sbjct: 285 AGNLGEAFML----ADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTP 340

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRI 133
               + +LI G +K   +       ++M+     PD+ ++  ++  +C + K  +  I I
Sbjct: 341 NLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKI-I 399

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG---------AGLDKFCY 184
             EMK+  +  N   Y  L++A   AG       ++ +M   G         A +D  C 
Sbjct: 400 MTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCK 459

Query: 185 AGLI 188
            GL+
Sbjct: 460 RGLV 463


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A +  A N   Y T+++    +      R ++ DM   G +P+   ++ +I G +K   +
Sbjct: 385 AEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSI 444

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYV 150
           ++   F+ +M+  G +PD+  Y Y   V G C N   D A+R+FEEMK    KPN   Y 
Sbjct: 445 REAERFKKEMEKKGLVPDI--YTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYT 502

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNK----IPR 197
            L++  A  G+ +  + +  DM AAG   D   Y+ L+ + HT+     +PR
Sbjct: 503 ALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSRKDPLPR 554



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     NA  YN+++ S T QR    +  +  +M   GV+PT   +  L+ G  + 
Sbjct: 172 DELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRA 231

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       D+MK      DV  Y+ +I+   +  N  +A  +F+E   + V+PN +TY
Sbjct: 232 GDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTY 291

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAGLI 188
             L+N     GQ++    ++ DM   G G         +D +C  G++
Sbjct: 292 GALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMV 339



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 62/327 (18%), Positives = 122/327 (37%), Gaps = 46/327 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+N A +   Y+ V+ +           +V+D+ +  GV+P    + +LI G  K 
Sbjct: 242 DEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKI 301

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            +++        M+  G   +  V+N +I   G C++   ++A+ I   M+K  ++ +  
Sbjct: 302 GQIEAAEMLLADMQLRGVGHNQIVFNTMID--GYCRHGMVEKALEIKAVMEKMGIELDIY 359

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  L        +++    ++  M   G   +   Y  LI+ H            K  +
Sbjct: 360 TYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIH-----------AKEGD 408

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
           +VE  + +  +E  G+                                 +  Y+V     
Sbjct: 409 MVEARRLFRDMEGKGSRPS------------------------------VVTYNVMIDGY 438

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +   ++  E   + ++K    PD+Y     +  +  +G +D   ++FE+       P  
Sbjct: 439 IKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNV 498

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTL 353
             Y  LV G A  G + +  QL  D L
Sbjct: 499 VAYTALVSGLAKEGRSEEAFQLYDDML 525



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 78  LFHSLIV-GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
           L  S++V G  K   + D     D++  +G   +   YN L+    + +N D    + +E
Sbjct: 149 LSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKE 208

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           M+   V+P   TY  L++  + AG +  V A+  +M       D + Y+ +I A+
Sbjct: 209 MENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAY 263


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 145/375 (38%), Gaps = 50/375 (13%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNTV+    S+ R    R V D M   GV+P    + SLI G  KG +L++     
Sbjct: 270 NVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGIL 329

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++MK  G LP    YN LI   G C   D  +A    +EM +  + P   TY  L++A  
Sbjct: 330 EKMKEIGLLPTAVTYNTLID--GYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALF 387

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
             G++D    +++DM  +G   D   Y  LI  +     R  +                 
Sbjct: 388 LEGKMDEADGMIKDMGDSGIVPDSITYNILINGYC----RCGNAKKAF------------ 431

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
                 N  +EM+    +     PT              L  Y    +  ++   ++A +
Sbjct: 432 ------NLHDEMISKGIQ-----PT--------------LVTYTSLIYVLSKRNRMKAAD 466

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
            L E + ++  SPD+ +    I  +  +G++D    + ++       P    Y TL++G 
Sbjct: 467 DLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGR 526

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK 397
                   ++ A++ L  M  R I   P   S   L++   K G    A  I D M +  
Sbjct: 527 C---REGKVEEARELLKEMKRRGI--RPDHISYNTLISGYSKRGDINDAFTIRDEMLSIG 581

Query: 398 ITPSLPAVEAYYNGL 412
             P+L    A   GL
Sbjct: 582 FNPTLLTYNALIQGL 596



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G L R F    A  +E  +RN   +   YNT++     + +    R++  +M   G++P 
Sbjct: 495 GNLDRAF----ALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPD 550

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRI 133
              +++LI G  K   + D F  RD+M + GF P +  YN LI   G CKN   D A  +
Sbjct: 551 HISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQ--GLCKNQQGDLAEEL 608

Query: 134 FEEMKKYEVKPNGQTYVCLL 153
            +EM    + P+  TY  L+
Sbjct: 609 LKEMVSKGITPDDSTYFSLI 628



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 68/159 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR      S YN ++ +L  + +      +  DM   G+ P    ++ LI G  + 
Sbjct: 365 DEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRC 424

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +  F   D+M + G  P +  Y  LI V  K      A  +FE++ +    P+   +
Sbjct: 425 GNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMF 484

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++   A G LD  +A++++M       D+  Y  L+
Sbjct: 485 NALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLM 523



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 8/148 (5%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R F LL++    M    + P    +++L+ G  +  ++++      +MK  G  PD   Y
Sbjct: 499 RAFALLKE----MDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISY 554

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N LIS   K  + + A  I +EM      P   TY  L+       Q D    ++++M +
Sbjct: 555 NTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVS 614

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTA 202
            G   D   Y  LI      I + DD++
Sbjct: 615 KGITPDDSTYFSLIEG----IGKVDDSS 638



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 52  TSQRRFFLLRDVYDDMMLDGVQPTRD--------LFHSLIVGTMKGSRLQDTFFFRDQMK 103
           T + R   ++DV+ ++ +     TRD        +F  LI    +  R  D F   D MK
Sbjct: 139 TIESRVAGVKDVFHELAI-----TRDRLGTKSSIVFDMLIRACCELKRGDDAFECFDMMK 193

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P +  +N ++S+  K   ++    ++ EM + ++K    T+  ++N     G+L 
Sbjct: 194 EKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLK 253

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
                +  M   G   +   Y  +I  + ++
Sbjct: 254 KAKDFIGSMENLGVKPNVVTYNTVIHGYCSR 284



 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M    ++ T   F+ +I    K  +L+    F   M+  G  P+V  YN +I   G
Sbjct: 223 LYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIH--G 280

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C     + A  + + MK   V+P+  TY  L++     G+L+    I+  M   G    
Sbjct: 281 YCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPT 340

Query: 181 KFCYAGLITAHTNK 194
              Y  LI  + NK
Sbjct: 341 AVTYNTLIDGYCNK 354


>gi|222618027|gb|EEE54159.1| hypothetical protein OsJ_00969 [Oryza sativa Japonica Group]
          Length = 610

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 153/358 (42%), Gaps = 32/358 (8%)

Query: 44  YNTVVTSLTSQRRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           Y T++ +LTSQR F    +LL +V D     G++P    F++LI   ++  R+ +     
Sbjct: 117 YTTLLAALTSQRAFDTIPWLLAEVED----AGLRPDSIFFNALINALVEARRMGEATNTF 172

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM------KKYEVKPNGQTYVCLL 153
            +M  +G  P  + +N LI   G     +++ R+F+ M       +  V+PN  TY  L+
Sbjct: 173 LRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILV 232

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
            A   AG+L+  + +V  M A+GA  D   Y  L +A+       +D   +  ELV +  
Sbjct: 233 KAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAK-----NDETWRAEELVVEMA 287

Query: 214 GWSSVETSGNNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
             + + TS       + G  +E  L          +  G L  ++ V++       +  D
Sbjct: 288 QQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVI-VFNTLLKGFLDAND 346

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           + A++ +L ++++    PD+      +      G +    KVF+  I +   P  ++Y+ 
Sbjct: 347 MAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSI 406

Query: 333 LVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
           L +G +    P   + A++ L  M         R+G    +V       G+T    IW
Sbjct: 407 LAKGYVRAQQP---EKAEELLRQMG--------RLGVRPNVVTFTTVISGWTFETLIW 453


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++++     +      VY+ M+ DG QPT   + +LI    K  ++++       M 
Sbjct: 181 YNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMV 240

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   +V  Y+ LIS C K      A+ + +EM +   KPN  T+  LL+ACA  GQ  
Sbjct: 241 RRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWK 300

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +   M + G   D   YA LI+A
Sbjct: 301 AAQDVFEQMPSCGCKPDAVSYAILISA 327



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++          L  DVY  ++ +G  P    ++ LI    K    Q+     
Sbjct: 107 NVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVL 166

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D ++  G  P+V  YN ++S C +    + A+R++E M     +P   TY  L++A    
Sbjct: 167 DALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKT 226

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+++    I +DM   G   +   Y+ LI+A
Sbjct: 227 GKIEEALRIFQDMVRRGCERNVITYSSLISA 257



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+++   S ++     ++  +M   GV      + +L+   +K + L+       Q+ 
Sbjct: 76  YTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLL 135

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P++  YN LI + GK  N  +A+++ + ++    KP  +TY  +L+AC  +GQ +
Sbjct: 136 REGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPE 195

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRA 198
               +   M A GA      Y  LI+A+  T KI  A
Sbjct: 196 HALRVYERMLADGAQPTATTYTALISAYGKTGKIEEA 232



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 8/174 (4%)

Query: 27  AGAEEYARRNYAN--------NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           +G  E+A R Y           A+ Y  ++++     +      ++ DM+  G +     
Sbjct: 191 SGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVIT 250

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI    K  R Q      D+M  +   P+   +N L+S C +      A  +FE+M 
Sbjct: 251 YSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMP 310

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
               KP+  +Y  L++A     Q       + +M   G   D   Y  +I A T
Sbjct: 311 SCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALT 364



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  RR    N   Y++++++     R+ L  ++ D+M  D  +P    F++L+    +G
Sbjct: 237 QDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQG 296

Query: 90  SRL---QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            +    QD F   +QM + G  PD   Y  LIS   +     +A++  +EM+    +P+ 
Sbjct: 297 GQWKAAQDVF---EQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDV 353

Query: 147 QTYVCLLNACAAAGQL 162
             Y  ++ A   +G L
Sbjct: 354 GVYNVVIEALTRSGVL 369



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           L DV  Y  +IS CG  +   +A+ +  EM+ + V  N  TY  L+N C  A +L+    
Sbjct: 70  LCDVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALD 129

Query: 168 IVRDMTAAGAGLDKFCYAGLITAH 191
           +   +   G   +   Y  LI  H
Sbjct: 130 VYGQLLREGCTPNLVTYNILIDIH 153


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 5/159 (3%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +N   Y T+++  + +      R ++ DM   G +P+   ++ +I G +K   +++   F
Sbjct: 376 SNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERF 435

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           + +M+  G +PDV  Y Y   V G C N   D A+R+FEEMK+   KPN   Y  L++  
Sbjct: 436 KKEMEKKGLVPDV--YTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGL 493

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNK 194
           A  G+ +  +    +M AAG   D   Y+ L+ + HT+K
Sbjct: 494 AKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDK 532



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     NA  YN ++ + T Q+    + +V  +M   GV+PT   +  L+ G    
Sbjct: 157 DEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLSTA 216

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       D++K      DV  Y+ +I+   +  N  +A  +F+E     ++PN +TY
Sbjct: 217 GDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTY 276

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAGLI 188
             L+N     GQ++    ++ DM   G G         +D +C  G++
Sbjct: 277 GALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMV 324



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 78  LFHSLIV-GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
           L  S++V G  K  R+ D     D+M  +G   +   YN L+    + KN  +   + +E
Sbjct: 134 LSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKE 193

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           M+   V+P   TY  L++  + AG +  V ++  ++       D + Y+ +I A+
Sbjct: 194 MESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAY 248



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M   G +P    + +LI G  K  R ++ F F D M A G  PD  +Y+ L+    
Sbjct: 470 LFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLH 529

Query: 123 KCKNSDQ 129
             K  D+
Sbjct: 530 TDKRKDE 536


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   YNT++  L    + +    + D M  +G +P+   F+ L+ G  K 
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKA 191

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +   F +QMKA GF P    YN LI+   + ++  +A R   +MK+  ++P   TY
Sbjct: 192 GKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTY 251

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+++ A    +   + I+  M  AG  +D   Y  L+ A
Sbjct: 252 TILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRA 292



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           +L+ G  KG  + +     D+M   G  P+   Y  L+         ++   +FEEM++ 
Sbjct: 43  ALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRG 102

Query: 141 EVKPNGQTYVCLLNACAAAGQLD---------PVYAIVRDMTAAGAGLDKFCYAG 186
            V+PN  TY CL+      G+ +         PV  IVR++ +    +   C  G
Sbjct: 103 GVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHG 157



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R V+D+M L G+ P    + +L+ G     + +  F   ++M+  G  P++  YN LI  
Sbjct: 58  RRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGE 117

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             +    ++A  +F+EM    +  N  +Y  L+      G+L
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKL 159



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           DV     L++ C K  +  +A R+F+EM    + PN  TY  L++     GQ +  +A+ 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 170 RDMTAAGAGLDKFCYAGLI 188
            +M   G   + + Y  LI
Sbjct: 97  EEMRRGGVEPNLYTYNCLI 115


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   Y+ ++          L +DVY  M+ +G  P    ++ LI   +K  
Sbjct: 301 EMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRC 360

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++     D ++      +V  YN +IS C K    +QA++++E+M    VKP+  TY 
Sbjct: 361 QWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYT 420

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L++A    GQ++    I RDM   G   +   Y+ LI+A
Sbjct: 421 ALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISA 460



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YNTV+++     +      VY+ M+  GV+P+   + +LI    K  +++     FRD +
Sbjct: 384 YNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMI 443

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +  G   +V  Y+ LIS C K    + A+ +F +M K   KPN  T+  L+ AC+  G  
Sbjct: 444 R-RGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHW 502

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +    +   M   G   D   Y GLITA+
Sbjct: 503 EKASELFEQMQTQGCKPDSITYCGLITAY 531



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTFFFRD 100
           Y T+++   S ++     ++  +M   G+      + +L+   +K + L   QD +    
Sbjct: 279 YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVY---K 335

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           QM   G  P++  YN LI V  K    ++A+++ + ++K  ++   +TY  +++AC  +G
Sbjct: 336 QMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSG 395

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Q +    +   M AAG       Y  LI+A+  K
Sbjct: 396 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKK 429



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 62/149 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A+ Y  ++++   + +     +++ DM+  G +     + SLI    K  R +      
Sbjct: 415 SATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELF 474

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M      P+V  +N LI+ C    + ++A  +FE+M+    KP+  TY  L+ A    
Sbjct: 475 SKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERG 534

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           GQ          M   G   D   +  L+
Sbjct: 535 GQWRRALKAFEQMQTQGCHPDAAVFNSLM 563



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 56/129 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR    N   Y++++++     R+ +  +++  M  +  +P    F+SLI     G   +
Sbjct: 444 RRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWE 503

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 +QM+  G  PD   Y  LI+   +     +A++ FE+M+     P+   +  L+
Sbjct: 504 KASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLM 563

Query: 154 NACAAAGQL 162
                +G L
Sbjct: 564 EVLWQSGVL 572



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           L D+  Y  +IS CG  +   +A+ +  EM+   +  N  TY  L+N C  A +LD    
Sbjct: 273 LCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQD 332

Query: 168 IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           + + M   G   +   Y  LI  +  +     + A K+++ +E+    + V T
Sbjct: 333 VYKQMLEEGCSPNLVTYNILIDVYVKRCQW--EEAVKVLDTLEKQAIQAEVRT 383


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 126/317 (39%), Gaps = 26/317 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R     +   Y++++T L           ++ +M   G +P    F +L+    K 
Sbjct: 173 EEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKA 232

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ D     D+MK  G  P V  YN LI+  GK  +  +A  + +EMK+   KP+  TY
Sbjct: 233 GRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTY 292

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKIIE 207
            CL+     A QLD    +++ M   G   D   Y  LI    N + +A   + A ++ +
Sbjct: 293 SCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLI----NGLGKAGLLNDAGRLFD 348

Query: 208 LVEQSKG-------WSSVETS-GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
            + +SKG       +S++ T+ G  A  E   V  EE+ ++          G    L T 
Sbjct: 349 RM-KSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV----------GIQPDLFT- 396

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
           Y        +   V   + L   ++    SPDV      +      G      K+FED  
Sbjct: 397 YCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMK 456

Query: 320 CSEKFPPAELYATLVEG 336
            S   P    Y  L+ G
Sbjct: 457 ESGLLPDVATYDALLLG 473



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++++L    R      ++ +M   G  P    ++SLI G  K  R Q      ++M+
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME 176

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  PDV  Y+ LI+  GK   + +A ++F+EMK+   KP+  T+  L++A   AG++D
Sbjct: 177 RHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVD 236

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++ +M   G       Y  LI  
Sbjct: 237 DALELLDEMKERGVKPGVVTYNALIAG 263



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 124/309 (40%), Gaps = 10/309 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     +  +   Y+ ++ SL    ++    +V  +M   G +P    +++L+    K 
Sbjct: 33  EELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKA 92

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  +      +M+ NG +PDV  YN LIS  GK     +A  +F EM++    P+  TY
Sbjct: 93  GQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTY 152

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+      G+      ++ +M   G   D   Y+ LIT         D    K  +L 
Sbjct: 153 NSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGK-----DGETVKAFKLF 207

Query: 210 EQSKGWSSVETSGN-NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           ++ K       S    A  + +G +      L   + +  RG  +   +  Y+       
Sbjct: 208 QEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERG--VKPGVVTYNALIAGFG 265

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           ++ D+     LL+ +K++   PDV      I   + +  +D   +V +  +  E  PP  
Sbjct: 266 KVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKK-MEKEGCPPDT 324

Query: 329 L-YATLVEG 336
           + Y TL+ G
Sbjct: 325 ITYNTLING 333



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 110/274 (40%), Gaps = 41/274 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++T+L    R      ++++M   G+QP    + S+I    K  ++ D      +M+
Sbjct: 362 YSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMR 421

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  YN  ++  G+     +A +IFE+MK+  + P+  TY  LL   +   ++D
Sbjct: 422 GKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVD 481

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               +++++   G   D                       K  E +E    W +V+ +  
Sbjct: 482 DACGLLKELIEQGCAFDSL---------------------KFDECLEILTSWGNVDEA-- 518

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
              +E++             ++ + +G  L    + Y+    A A+   V      LE L
Sbjct: 519 ---HELL-------------QFANSKG--LWPGASSYNALIDALAKAGRVSEAFNTLEDL 560

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           K+    PD+      I     +G ID   ++ E+
Sbjct: 561 KEQGGKPDIVSYSSLISALGQTGQIDTAFELLEE 594



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    ++SL+    K  + ++     +++KA  + PDV  Y+ LI+  G+    + A+ +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             EM+    KPN  TY  L++    AGQ D    ++ +M   G   D   Y  LI+    
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIST-LG 125

Query: 194 KIPRADDTATKIIELVEQ 211
           K  R  +  T   E+ E+
Sbjct: 126 KAGRLSEAFTLFAEMRER 143



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 35/180 (19%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YN  + SL    RF   R +++DM   G+ P    + +L++G  K   + D      ++ 
Sbjct: 432 YNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELI 491

Query: 103 ----------------------------------KANGFLPDVAVYNYLISVCGKCKNSD 128
                                              + G  P  + YN LI    K     
Sbjct: 492 EQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVS 551

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A    E++K+   KP+  +Y  L++A    GQ+D  + ++ +M+  G  L    Y+ L+
Sbjct: 552 EAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 18/305 (5%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YN+V+  L  + R   + ++ ++M   G+ P    +++L+ G  K   L     
Sbjct: 274 AANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLV 333

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M   G  P+V  Y  LI+   K  N  +A+ IF++M+   ++PN +TY  L++   
Sbjct: 334 LLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFC 393

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE--LVEQSK 213
             G ++  Y ++ +M  +G       Y  L+  +    ++  A      ++E  L     
Sbjct: 394 QKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVV 453

Query: 214 GWSSVETSGNNAENEMMGV--SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
            +S+V  +G   E E+      KEE+             G L   +T   +    C + K
Sbjct: 454 SYSTV-IAGFCRERELGKAFQMKEEMV----------EKGVLPDTVTYSSLIQGLCLQQK 502

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
            V+A +   EM+++    PD       I  Y   G++    ++ ++ +     P    Y+
Sbjct: 503 LVEAFDLFREMMRRGL-PPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYS 561

Query: 332 TLVEG 336
            L+ G
Sbjct: 562 VLING 566



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 5/160 (3%)

Query: 34  RRNYANNASEYNTVVTSL-----TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           R  +A     YN V+ +L     ++ R +     V+ DM+ +GV P    ++ +I G + 
Sbjct: 160 RHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVS 219

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              L+    F  +M+  G  P+V  YN LI    K K   +A+ +   M    V  N  +
Sbjct: 220 QGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLIS 279

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           Y  ++N     G++  V  +V +M   G   D+  Y  L+
Sbjct: 280 YNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLV 319



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 13/160 (8%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++ +   +++      +   M + GV      ++S+I G     R+ +     
Sbjct: 241 NVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELV 300

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++M+  G +PD   YN L++  G CK  N  Q + +  EM    + PN  TY  L+N   
Sbjct: 301 EEMRGKGLVPDEVTYNTLVN--GFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMC 358

Query: 158 AAGQLDPVYAIVRDMTAAG---------AGLDKFCYAGLI 188
            AG L     I   M   G           +D FC  GL+
Sbjct: 359 KAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLM 398



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 11/159 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    +   Y++++  L  Q++     D++ +MM  G+ P    + SLI      
Sbjct: 476 EEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVD 535

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L       D+M   GFLPD   Y+ LI+   K   +  A R+  ++   E  P+  TY
Sbjct: 536 GELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTY 595

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+  C +  +   V  +V+           FC  GL+
Sbjct: 596 NTLIENC-SNNEFKSVEGLVKG----------FCMKGLM 623



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 4/159 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   Y T++     +        V  +M++ G  P+   +++L+ G     R+Q+
Sbjct: 376 RGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQE 435

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCL 152
                  M   G  PDV  Y+ +I+  G C+  +  +A ++ EEM +  V P+  TY  L
Sbjct: 436 AVGILRGMVERGLPPDVVSYSTVIA--GFCRERELGKAFQMKEEMVEKGVLPDTVTYSSL 493

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +       +L   + + R+M   G   D+  Y  LI A+
Sbjct: 494 IQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAY 532



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 42/239 (17%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           FRD ++ NG  P+V  YN +I       + ++ +    +M+K  + PN  TY  L++A  
Sbjct: 195 FRDMVR-NGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
              ++    A++R M   G   +   Y  +I     K        +++ ELVE+ +G   
Sbjct: 254 KKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGK-----GRMSEVGELVEEMRGKGL 308

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
           V             V+   L N           GF              C E    Q + 
Sbjct: 309 VPDE----------VTYNTLVN-----------GF--------------CKEGNLHQGLV 333

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            L EM+ K   SP+V      I C   +G++    ++F+        P    Y TL++G
Sbjct: 334 LLSEMVGKGL-SPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDG 391



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  G+ P    + ++I G  +   L   F  +++M   G LPD   Y+ LI   G C  
Sbjct: 443 MVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQ--GLCLQ 500

Query: 127 SD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +A  +F EM +  + P+  TY  L+NA    G+L     +  +M   G   D   Y
Sbjct: 501 QKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTY 560

Query: 185 AGLITAHTNK 194
           + LI     K
Sbjct: 561 SVLINGLNKK 570


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 138/334 (41%), Gaps = 20/334 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +  ++N ++  L  + +    + ++ ++   G++PT   F++LI G  K 
Sbjct: 214 EEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKS 273

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L   F  +  M  N   PDV  Y+ LI+  G CK    D A ++F EM    + PN  
Sbjct: 274 GNLDQGFRLKRFMMENRVFPDVFTYSVLIN--GLCKEGQLDDANKLFLEMCDRGLVPNDV 331

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T+  L+N     G+ D    I + M   G   D   Y  LI     K+    +    +IE
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLING-LCKVGDLREAKKLVIE 390

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA- 266
           + ++      ++         + G  KE   +L +A  +  R   +   + + +VAF A 
Sbjct: 391 MTQR-----GLKPDKFTYTMLIDGCCKEG--DLESALEI--RKEMVKEGIELDNVAFTAL 441

Query: 267 ----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
               C E + ++A  TL EML+   K  D    M  I  +   GD+  G K+ ++  C  
Sbjct: 442 ISGFCREGQVIEAERTLREMLEAGIKPDDATYTMV-IHGFCKKGDVKTGFKLLKEMQCDG 500

Query: 323 KFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNM 356
             P    Y  L+ G       K   +  D ++N+
Sbjct: 501 HVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++  +M+ +G++     F +LI G  + G  ++     R+ ++A G  PD A Y  +I  
Sbjct: 421 EIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA-GIKPDDATYTMVIH- 478

Query: 121 CGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK  D     ++ +EM+     P   TY  LLN     GQ+     ++  M   G  
Sbjct: 479 -GFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVV 537

Query: 179 LDKFCYAGLITAHTNKIPRAD 199
            D   Y  L+  H     R D
Sbjct: 538 PDDITYNILLEGHCKHGNRED 558



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 137/339 (40%), Gaps = 18/339 (5%)

Query: 79  FHS---LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
           FHS   L    MK +     + F +++   G+ PDV  +N L+    K    ++A  +F 
Sbjct: 190 FHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFG 249

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
           E+ K  ++P   ++  L+N    +G LD  + + R M       D F Y+ LI     K 
Sbjct: 250 EIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLING-LCKE 308

Query: 196 PRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
            + DD     +E+ +  +G    + +     N      + +L  +   + + R+G  +  
Sbjct: 309 GQLDDANKLFLEMCD--RGLVPNDVTFTTLINGHCVTGRADL-GMEIYQQMLRKG--VKP 363

Query: 256 LLTVYHVAFHACAELKDV-QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
            +  Y+   +   ++ D+ +A + ++EM ++  K PD +     I      GD+++  ++
Sbjct: 364 DVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK-PDKFTYTMLIDGCCKEGDLESALEI 422

Query: 315 FEDYICSEKFPPAELYATLVEGAMFGYTPKGMQL-AQDTLVNMNSRNIFLSPRMGSDLLL 373
            ++ +        EL        + G+  +G  + A+ TL  M    I   P   +  ++
Sbjct: 423 RKEMVKEG----IELDNVAFTALISGFCREGQVIEAERTLREMLEAGI--KPDDATYTMV 476

Query: 374 VAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           +    K G   T   +   MQ     P +       NGL
Sbjct: 477 IHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++ +    R F   + V  +M   G       ++ LI G  +   +++ F F+  M+
Sbjct: 247 YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 306

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD   Y  LI+   K + S++A  + +EM   E+KPN   Y  L++     G  D
Sbjct: 307 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 366

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             + ++++M AAG   +K  Y  L+     K+ + D  +  + ++V  S    ++ T   
Sbjct: 367 EAFKMIKEMVAAGVQPNKITYDNLVRGLC-KMGQMDRASLLLKQMVRDSHRPDTI-TYNL 424

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
             E      SK++ + L +          +S  +  Y +  H   +  + +    LLE +
Sbjct: 425 IIEGHFRHHSKKDAFRLLS----EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 480

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                 P+ ++    I  Y   G++    ++F+        P    Y +L+ G
Sbjct: 481 TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG 533



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 10/310 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    NA  Y  +++    +    L  +++D M    V P    ++SLI G  K 
Sbjct: 478 EEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKV 537

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            R++++  +  QM+  G LP+   Y+ LI   G  KN D   A ++ + M    +KPN  
Sbjct: 538 GRVEESTKYFAQMQERGLLPNEFTYSGLIH--GYLKNGDLESAEQLVQRMLDTGLKPNDV 595

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
            Y+ LL +   +  ++ V +  + M   G  LD   Y  LI  H        + A +++ 
Sbjct: 596 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI--HNLSSSGNMEAAFRVLS 653

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            +E++     V    +          +E+ + +   + + ++G  +   +  Y+      
Sbjct: 654 GIEKNGSVPDVHVYSSLISGLCKTADREKAFGI--LDEMSKKG--VDPNIVCYNALIDGL 709

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +  D+     +   +      P+       I      GDI N   ++ + + +   P A
Sbjct: 710 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 769

Query: 328 ELYATLVEGA 337
            +Y+ L  G 
Sbjct: 770 FVYSVLTTGC 779



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 122/306 (39%), Gaps = 22/306 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L          D+ ++M   G++P   ++  LI G  +   +       
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 512

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M     LPD+  YN LI    K    +++ + F +M++  + PN  TY  L++     
Sbjct: 513 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 572

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G L+    +V+ M   G   +   Y  L+ ++     ++DD     IE V  S  + S+ 
Sbjct: 573 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF----KSDD-----IEKV--SSTFKSML 621

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--------LTVYHVAFHACAELK 271
             G   +N + G+    ++NL ++  +      LS +        + VY        +  
Sbjct: 622 DQGVMLDNRIYGIL---IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA 678

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
           D +    +L+ + K    P++      I     SGDI     VF   +     P    Y 
Sbjct: 679 DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYT 738

Query: 332 TLVEGA 337
           +L++G+
Sbjct: 739 SLIDGS 744



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +++    N   YN ++  L         R+V++ ++  G+ P    + SLI G+ K 
Sbjct: 688 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 747

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
             + + F+  ++M A G  PD  VY+ L + C    + +QA+ + EEM
Sbjct: 748 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 795



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 153/402 (38%), Gaps = 58/402 (14%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ +V  L    +      +   M+ D  +P    ++ +I G  +    +D F   
Sbjct: 383 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 442

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+  G  P+V  Y Y I + G C++ +  +A  + EEM    +KPN   Y  L++   
Sbjct: 443 SEMENAGISPNV--YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 500

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
             G +     I   MT      D +CY  LI    +K+ R +++     ++ E+    + 
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNE 559

Query: 218 VETSG-----------NNAE-------------NEMMGVSKEELYNLPTAEYVHRRGGFL 253
              SG            +AE             N+++ +   E Y    ++ + +     
Sbjct: 560 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF--KSDDIEKVSSTF 617

Query: 254 SRLLT--------VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
             +L         +Y +  H  +   +++A   +L  ++K+   PDV++    I     +
Sbjct: 618 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKT 677

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF--- 362
            D +    + ++       P    Y  L++G           L +   ++  +RN+F   
Sbjct: 678 ADREKAFGILDEMSKKGVDPNIVCYNALIDG-----------LCKSGDISY-ARNVFNSI 725

Query: 363 ----LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
               L P   +   L+    K G  + A Y+++ M A  ITP
Sbjct: 726 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITP 767



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 16/190 (8%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           I  H+ S  G +   F V S G E   +     +   Y+++++ L           + D+
Sbjct: 634 ILIHNLSSSGNMEAAFRVLS-GIE---KNGSVPDVHVYSSLISGLCKTADREKAFGILDE 689

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   GV P    +++LI G  K   +       + + A G +P+   Y  LI   G CK 
Sbjct: 690 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLID--GSCKV 747

Query: 127 SD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG------ 178
            D   A  ++ EM    + P+   Y  L   C++AG L+    ++ +M   G        
Sbjct: 748 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFN 807

Query: 179 --LDKFCYAG 186
             +D FC  G
Sbjct: 808 NLVDGFCKRG 817



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 133/347 (38%), Gaps = 12/347 (3%)

Query: 67  MMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           MM D G+ P+    ++L+   ++   +   +  R+ M   G  PDV  Y+ LI    K +
Sbjct: 199 MMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVR 258

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
             D A ++  EM++     N  TY  L+     +G ++  +   +DM   G   D F Y 
Sbjct: 259 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 318

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
            LI        R  + A  +++ +  ++   +V    N  +  M   + +E + +   E 
Sbjct: 319 ALINGLCKS--RRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM-IKEM 375

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
           V    G     +T  ++    C ++  +     LL+ + +D   PD       I  +   
Sbjct: 376 V--AAGVQPNKITYDNLVRGLC-KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRH 432

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSP 365
               +  ++  +   +   P    Y+ ++ G      P   + A D L  M ++   L P
Sbjct: 433 HSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEP---EKASDLLEEMTTKG--LKP 487

Query: 366 RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
                  L++   + G  + A  I+D M    + P L    +   GL
Sbjct: 488 NAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 534


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   YNT++  L    + +    + D M  +G +P+   F+ L+ G  K 
Sbjct: 132 DEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKA 191

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +   F +QMKA GF P    YN LI+   + ++  +A R   +MK+  ++P   TY
Sbjct: 192 GKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTY 251

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+++ A    +   + I+  M  AG  +D   Y  L+ A
Sbjct: 252 TILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRA 292



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           +L+ G  KG  + +     D+M   G  P+   Y  L+         ++   +FEEM++ 
Sbjct: 43  ALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRG 102

Query: 141 EVKPNGQTYVCLLNACAAAGQLD---------PVYAIVRDMTAAGAGLDKFCYAGLI--T 189
            V+PN  TY CL+      G+ +         PV  IVR++ +    +   C  G +   
Sbjct: 103 GVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDA 162

Query: 190 AHTNKIPRADDTATKII 206
           A    + R + T   II
Sbjct: 163 AKLLDMMRTEGTRPSII 179



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R V+D+M L G+ P    + +L+ G     + +  F   ++M+  G  P++  YN LI  
Sbjct: 58  RRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGE 117

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             +    ++A  +F+EM    +  N  +Y  L+      G+L
Sbjct: 118 WCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKL 159



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           DV     L++ C K  +  +A R+F+EM    + PN  TY  L++     GQ +  +A+ 
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 170 RDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
            +M   G   + + Y  LI     T +  RA
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERA 127


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 125/323 (38%), Gaps = 36/323 (11%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+E        +   Y T+V  L   ++      + + +  +G  PT   +++L+ G  K
Sbjct: 22  AQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCK 81

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             RL++      ++  NG  PDV  Y  LI   GK K S +A ++F+EM    +  +   
Sbjct: 82  MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVC 141

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGA---------GLDKFCYAGLITAHTNKIPRAD 199
           Y  L+     AG++    ++ + MT+ G           +D  C AG I A         
Sbjct: 142 YTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGA--------- 192

Query: 200 DTATKIIELVEQSKGWSSVETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGFL 253
             A +I         + S+E  G  A NE++      G+ K    +         +  F 
Sbjct: 193 --AVRI---------FKSMEARG-LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
           +     Y++      +  DV A     + + +    PDVY     I  +  +G+ D    
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACG 300

Query: 314 VFEDYICSEKFPPAELYATLVEG 336
           VF+D   S   P    Y TL+ G
Sbjct: 301 VFDDMSSSRCSPNVVTYGTLISG 323



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R  A N   Y+ ++  L   R+     ++   M      P    ++ LI G  K   +  
Sbjct: 203 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAA 262

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              F D+M   G  PDV  YN LIS   K  N+D A  +F++M      PN  TY  L++
Sbjct: 263 ARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLIS 322

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                 QL       + M   G   D F Y+ L+
Sbjct: 323 GLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLV 356



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 56/133 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L         R  +D+M+  G +P    ++ LI G  K           D M 
Sbjct: 247 YNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMS 306

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++   P+V  Y  LIS   K +   +A   ++ MK+    P+   Y  L++    +G+L+
Sbjct: 307 SSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLE 366

Query: 164 PVYAIVRDMTAAG 176
               +  +M  +G
Sbjct: 367 GGCMLFDEMERSG 379



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++             V+DDM      P    + +LI G  K  +L     +   MK
Sbjct: 282 YNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMK 341

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PD  VY+ L+   G CK+   +    +F+EM++  V  N QT   L+     A +
Sbjct: 342 ERGCPPDSFVYSSLVD--GLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANR 398

Query: 162 LDPVYAI 168
           +D   ++
Sbjct: 399 VDEAVSL 405


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 138/334 (41%), Gaps = 20/334 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +  ++N ++  L  + +    + ++ ++   G++PT   F++LI G  K 
Sbjct: 214 EEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKS 273

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L   F  +  M  N   PDV  Y+ LI+  G CK    D A ++F EM    + PN  
Sbjct: 274 GNLDQGFRLKRFMMENRVFPDVFTYSVLIN--GLCKEGQLDDANKLFLEMCDRGLVPNDV 331

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T+  L+N     G+ D    I + M   G   D   Y  LI     K+    +    +IE
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLC-KVGDLREAKKLVIE 390

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA- 266
           + ++      ++         + G  KE   +L +A  +  R   +   + + +VAF A 
Sbjct: 391 MTQR-----GLKPDKFTYTMLIDGCCKEG--DLESALEI--RKEMVKEGIELDNVAFTAL 441

Query: 267 ----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
               C E + ++A  TL EML+   K  D    M  I  +   GD+  G K+ ++  C  
Sbjct: 442 ISGFCREGQVIEAERTLREMLEAGIKPDDATYTMV-IHGFCKKGDVKTGFKLLKEMQCDG 500

Query: 323 KFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNM 356
             P    Y  L+ G       K   +  D ++N+
Sbjct: 501 HVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 137/339 (40%), Gaps = 18/339 (5%)

Query: 79  FHS---LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
           FHS   L    MK +     + F +++   G+ PDV  +N L+    K    ++A  +F 
Sbjct: 190 FHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFG 249

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
           E+ K  ++P   ++  L+N    +G LD  + + R M       D F Y+ LI     K 
Sbjct: 250 EIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLC-KE 308

Query: 196 PRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
            + DD     +E+ +  +G    + +     N      + +L  +   + + R+G  +  
Sbjct: 309 GQLDDANKLFLEMCD--RGLVPNDVTFTTLINGHCVTGRADL-GMEIYQQMLRKG--VKP 363

Query: 256 LLTVYHVAFHACAELKDV-QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
            +  Y+   +   ++ D+ +A + ++EM ++  K PD +     I      GD+++  ++
Sbjct: 364 DVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK-PDKFTYTMLIDGCCKEGDLESALEI 422

Query: 315 FEDYICSEKFPPAELYATLVEGAMFGYTPKGMQL-AQDTLVNMNSRNIFLSPRMGSDLLL 373
            ++ +        EL        + G+  +G  + A+ TL  M    I   P   +  ++
Sbjct: 423 RKEMVKEG----IELDNVAFTALISGFCREGQVIEAERTLREMLEAGI--KPDDATYTMV 476

Query: 374 VAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           +    K G   T   +   MQ     P +       NGL
Sbjct: 477 IHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +   Y+ ++ +L   +R        D M+ +   P    ++S++ G  K  R+ D F 
Sbjct: 472 APDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFL 531

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             D+M+A G +PDV  Y+ +I    K  N D A ++ E MK+ +  P+  TY  L+N   
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLC 591

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRA 198
            AG +D  + + ++M   G   +   Y  LI      NK+ +A
Sbjct: 592 KAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQA 634



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           ++  YNT++  L+   R      + ++M+ +G  P    +++++ G  K +R+++  +  
Sbjct: 229 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 288

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +QM   G  PDV  Y  +I+   K    D+A R+ ++M +   +PN  TY  L++     
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAHTNKIPRADDTATKIIE 207
           G LD    +VR MT  G   +   Y  +  +    N + RA      +I+
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQ 398



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 159/410 (38%), Gaps = 51/410 (12%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            Y+T+V SL    +      + +DM+  G  P    + SL+ G  K  +L +      +M 
Sbjct: 951  YSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 1010

Query: 104  ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             +G  P++  YN +I   G CK    D+A  + EEM     +PN  TY  LL+A    G+
Sbjct: 1011 RSGCSPNIVTYNTIID--GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 1068

Query: 162  LDPVYAIVRDMTAAG---------AGLDKFC-------YAGLITAHTNK--IPRADDTAT 203
             +    +V  M   G         + LD FC          L+++   K  +P      T
Sbjct: 1069 AEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNT 1128

Query: 204  KIIELVEQSKGWSSV----ETSGNNAENEMMGVSK--------------EELYNLPTAEY 245
             I  L + +K    V    +   NN   +++  +                EL+NL     
Sbjct: 1129 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLI---- 1184

Query: 246  VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
              +  G    L+T   +    C   +  QA   L EM +K   SPD+      I     S
Sbjct: 1185 --QESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKS 1242

Query: 306  GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSP 365
              +D  +K+F   + S+   P ++  ++V  ++  +  + M  A + L  +  +N F  P
Sbjct: 1243 KRVDRAYKLFLQML-SDGLAPDDVTYSIVISSLCKW--RFMDEANNVL-ELMLKNGF-DP 1297

Query: 366  RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415
               +   L+    K+G    A  I  L+ ++   P +     + + L  R
Sbjct: 1298 GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 1347



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 80/206 (38%), Gaps = 50/206 (24%)

Query: 44  YNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           YN+VV  L   RR    FLL   +D M   GV P    +  +I    K + L   F   +
Sbjct: 513 YNSVVDGLCKSRRINDAFLL---FDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLE 569

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM----------------------- 137
           +MK    +PDV  Y+ LI+   K    D+A  +F+EM                       
Sbjct: 570 RMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKIN 629

Query: 138 ------------KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
                       +K    P+  TY CL+N    A +L+  + ++R+M   G   D+  Y 
Sbjct: 630 KVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYG 689

Query: 186 GLITAHTNKIPRADDTATKIIELVEQ 211
            L+ A            T  +ELVEQ
Sbjct: 690 TLLRALQK---------TNNLELVEQ 706



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 74   PTRDLFHSLIVGTMKGSRLQDTFF--FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
            P   + H++++  +  +R  D+    F++  ++    PDV  Y+ ++    K    D A 
Sbjct: 909  PQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 968

Query: 132  RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            R+ E+M      PN  TY  LL+    AG+LD   A+++ MT +G   +   Y  +I  H
Sbjct: 969  RLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 1028

Query: 192  TNKIPRADDTATKIIELVE 210
              K+ R D+    + E+V+
Sbjct: 1029 C-KLGRIDEAYHLLEEMVD 1046



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/338 (18%), Positives = 125/338 (36%), Gaps = 33/338 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R    +   Y TV+  L    +      V D M+  G QP    + +L+ G  + 
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L        +M   G+ P+   YN ++ V  +  + ++A ++ + M +    P+   Y
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINY 408

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL- 208
             +++    AG+L   + ++  M   G   D  C + LI A       A D+A +++ + 
Sbjct: 409 STIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCK--AAAIDSAQELLRMS 466

Query: 209 ------------------------VEQSKGWSSVETSGNNAENEMM------GVSKEELY 238
                                   + +++ W  V        + +       G+ K    
Sbjct: 467 IGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRI 526

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
           N     +   R   +   +  Y +  H+  +  ++ +   +LE +K+ +  PDV      
Sbjct: 527 NDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSAL 586

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           I     +G +D    VF++ +     P    Y TL++G
Sbjct: 587 INGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDG 624



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 40   NASEYNTVVTSLTSQRRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
            N   YN++V  L   RRF    +LLR++       G  P    ++++I G  K  R+   
Sbjct: 1192 NLVTYNSLVHGLCKSRRFDQAEYLLREMTRK---QGCSPDIITYNTVIDGLCKSKRVDRA 1248

Query: 96   FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            +    QM ++G  PD   Y+ +IS   K +  D+A  + E M K    P   TY  L++ 
Sbjct: 1249 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 1308

Query: 156  CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                G LD    I++ + + G+  D   ++  I
Sbjct: 1309 FCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 1341



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 3/172 (1%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            E    + Y  N   YN+++     +        +   M+  G  P    ++++I G  K 
Sbjct: 1077 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 1136

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +++ +     +QM +N  +PD+  +N +I    K    D A  +F  +++    PN  TY
Sbjct: 1137 TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 1196

Query: 150  VCLLNACAAAGQLDPVYAIVRDMT-AAGAGLDKFCYAGLI--TAHTNKIPRA 198
              L++    + + D    ++R+MT   G   D   Y  +I     + ++ RA
Sbjct: 1197 NSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 1248



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 7/194 (3%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            E+    N   +   +NT++ ++    R  +  ++++ +   G  P    ++SL+ G  K 
Sbjct: 1147 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 1206

Query: 90   SRL-QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             R  Q  +  R+  +  G  PD+  YN +I    K K  D+A ++F +M    + P+  T
Sbjct: 1207 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 1266

Query: 149  YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKII 206
            Y  ++++      +D    ++  M   G       Y  LI     T  +    D A +I+
Sbjct: 1267 YSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL----DKALEIL 1322

Query: 207  ELVEQSKGWSSVET 220
            +L+     +  V T
Sbjct: 1323 QLLLSKGSYPDVVT 1336



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/308 (19%), Positives = 123/308 (39%), Gaps = 12/308 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     +A N   YNTV+       R      + + M+  G  P    + ++I G  K 
Sbjct: 254 EEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKL 313

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +     D+M   G  P+V  Y  L+    +  + D A+ +  +M +   +PN  TY
Sbjct: 314 DQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITY 373

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
             +++       ++  + +++ M   G   D   Y+ +I+      K+  A D   ++I 
Sbjct: 374 NNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIR 433

Query: 208 LVEQSKGWSSVETSGNNAENEMMGV-SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
                +   +  ++  +A  +   + S +EL  +         G   +  +  Y +  HA
Sbjct: 434 --RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSI-------GMDCAPDVVAYSILIHA 484

Query: 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
             + K +   E+ L+++ K+R  PDV      +     S  I++   +F+    +   P 
Sbjct: 485 LCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPD 544

Query: 327 AELYATLV 334
              Y+ ++
Sbjct: 545 VVTYSIVI 552



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DV+ +M+  G  P    +++LI G  K ++++      + M+     PD   Y  LI+  
Sbjct: 601 DVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLIN-- 658

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
           G C  S  ++A R+  EMK     P+  TY  LL A      L+ V  ++++M A   G
Sbjct: 659 GLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEEG 717



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 115/297 (38%), Gaps = 10/297 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y+T+++      +     D+ + M+  G +P      +LI    K + +       
Sbjct: 404 DAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL 463

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
                    PDV  Y+ LI    K K   +A    + M K    P+  TY  +++    +
Sbjct: 464 RMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKS 523

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +++  + +   M AAG   D   Y+  I  H+       D+A K++E ++++K    V 
Sbjct: 524 RRINDAFLLFDRMRAAGVMPDVVTYS--IVIHSFCKDNNLDSAFKMLERMKEAKCVPDVV 581

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T        + G+ K    +     +    G   +  L  Y+       ++  V+    +
Sbjct: 582 TYSA----LINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEM 637

Query: 280 LEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           LE+++K   +PD   Y  + N  C  ++  ++   +V  +       P    Y TL+
Sbjct: 638 LEIMRKQSCTPDSITYTCLINGLC--NASRLEEAWRVLREMKDKGCLPDRMTYGTLL 692



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 50/115 (43%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    ++++I G  K  RL D     ++M  NGF P+V  YN ++    K    + A+ +
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            E+M      P+  +Y  ++N      Q+D    ++  M   G   +   Y  L+
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 4/170 (2%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
            YNTV+  L   +R      ++  M+ DG+ P  D+ +S+++ ++   R  D      + M
Sbjct: 1232 YNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPD-DVTYSIVISSLCKWRFMDEANNVLELM 1290

Query: 103  KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              NGF P    Y  LI    K  N D+A+ I + +      P+  T+   ++  +  G+L
Sbjct: 1291 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 1350

Query: 163  DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
                 ++  M  AG   D   Y  L+    +     D  A  + E++ Q 
Sbjct: 1351 RQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTED--AVDLFEVMRQC 1398



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YNT++  L    +     ++ + M      P    +  LI G    SRL++ + 
Sbjct: 612 APNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWR 671

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
              +MK  G LPD   Y  L+    K  N +   ++ +EM+  E
Sbjct: 672 VLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATE 715


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 131/303 (43%), Gaps = 16/303 (5%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N   YN ++  L + R+  L   + ++M   G+QP    F +LI    +  + ++  
Sbjct: 139 YEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEAL 198

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            + ++MK+ G +PD   YN +I + G+    ++A+ ++E++K    K +  TY  + N  
Sbjct: 199 KWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVY 258

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           A AG    +  +V++M  +G+  +      L+            T +K  ++ +  K ++
Sbjct: 259 ARAGDYQSIIQLVQEMRDSGSSPNAVIMNTLM-----------GTLSKAGKVNQAKKVFN 307

Query: 217 SVETSGNNAENEMMGV-----SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
            + TSG +     + +     ++   Y+     Y   +       + VY+    AC E  
Sbjct: 308 EMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGG 367

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
            V+  E +L+ +K+   +PD       +  Y   G +D   ++F+  +     P   L+ 
Sbjct: 368 RVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFT 427

Query: 332 TLV 334
            ++
Sbjct: 428 VMI 430



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA   NT++ +L+   +    + V+++M   GV PT      L+    +       F   
Sbjct: 282 NAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVY 341

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + +K  G+  DVAVYN L+  C +    +QA  I +EMK+    P+  TY   +N  A  
Sbjct: 342 ETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATK 401

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           G +DP   +   + A     D   +  +I A   K+    + A+KI + + +S
Sbjct: 402 GMVDPARRMFDKVVALNGKPDTPLFTVMIRAC--KLAGEIEQASKIFDEMMES 452


>gi|357502627|ref|XP_003621602.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496617|gb|AES77820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 613

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 5/262 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT+++       +  +  ++  M  +G   T   +  LI   ++ ++ + + +  
Sbjct: 289 DAVVYNTMISICKEVDNWSEIERLWRSMKENGCDRTLVTYRLLISSFVRCNQSELSLYAY 348

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  NGF P+  + N +I VC K    D+A+ +F++M   + KPN      L+N+    
Sbjct: 349 HEMVHNGFEPNSNILNSIICVCAKEGKWDEALSVFQKMLTSDFKPNLVACNVLINSLGKE 408

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+L   + +   M + G   D + Y  L+++  NK  + ++ A KI   +E+S+     +
Sbjct: 409 GELKLAFQVYNTMKSFGQKPDAYTYNALMSS-LNKANKHNE-ALKIFNRIERSQICEFNK 466

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
              N A   +M  S+  L++             LS L   Y++    C  +K  +    +
Sbjct: 467 HLYNTA---LMSCSELRLWDRAVEILWKMEASGLSDLTVSYNLVIRTCELVKKPKIAWQV 523

Query: 280 LEMLKKDRKSPDVYIVMQNIRC 301
            E +     SP+++  +  IRC
Sbjct: 524 YEHMVHQNCSPNIFTYLSIIRC 545



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E     +  N++  N+++     + ++     V+  M+    +P     + LI    K  
Sbjct: 350 EMVHNGFEPNSNILNSIICVCAKEGKWDEALSVFQKMLTSDFKPNLVACNVLINSLGKEG 409

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTY 149
            L+  F   + MK+ G  PD   YN L+S   K    ++A++IF  +++ ++ + N   Y
Sbjct: 410 ELKLAFQVYNTMKSFGQKPDAYTYNALMSSLNKANKHNEALKIFNRIERSQICEFNKHLY 469

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
              L +C+     D    I+  M A+G
Sbjct: 470 NTALMSCSELRLWDRAVEILWKMEASG 496


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 131/303 (43%), Gaps = 16/303 (5%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N   YN ++  L + R+  L   + ++M   G+QP    F +LI    +  + ++  
Sbjct: 139 YEINRYTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEAL 198

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            + ++MK+ G +PD   YN +I + G+    ++A+ ++E++K    K +  TY  + N  
Sbjct: 199 KWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVY 258

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           A AG    +  +V++M  +G+  +      L+            T +K  ++ +  K ++
Sbjct: 259 ARAGDYQSIMQLVQEMRDSGSSPNAVIMNTLM-----------GTLSKAGKVNQAKKVFN 307

Query: 217 SVETSGNNAENEMMGV-----SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
            + TSG +     + +     ++   Y+     Y   +       + VY+    AC E  
Sbjct: 308 EMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGG 367

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
            V+  E +L+ +K+   +PD       +  Y   G +D   ++F+  +     P   L+ 
Sbjct: 368 RVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFT 427

Query: 332 TLV 334
            ++
Sbjct: 428 VMI 430



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA   NT++ +L+   +    + V+++M   GV PT      L+    +       F   
Sbjct: 282 NAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVY 341

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + +K  G+  DVAVYN L+  C +    +QA  I +EMK+    P+  TY   +N  A  
Sbjct: 342 ETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATK 401

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           G +DP   +   + A     D   +  +I A   K+    + A+KI + + +S
Sbjct: 402 GMVDPARRMFDKVVALNGKPDTPLFTVMIRAC--KLAGEIEQASKIFDEMMES 452


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATK- 204
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   + 
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
           I++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 IMKGLKPDKFTYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M++ G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R  +  N   + +++     + +    ++V   M   G++P   +F +L+ G     
Sbjct: 226 EDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAG 285

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           ++ D +   + M+  GF P+V  Y  LI ++C   K  D+A+R+F EM++Y  + +  TY
Sbjct: 286 KMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTY 345

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++     G +D  Y+++ DM   G    +  Y  ++ AH  K     +   + +EL+
Sbjct: 346 TALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKK-----EQFEECLELI 400

Query: 210 EQSK 213
           E+ K
Sbjct: 401 EKMK 404



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           L+Q++ R  K +  A+  R FV      E  R     +   Y  +++             
Sbjct: 312 LIQALCRTEKRMDEAM--RVFV------EMERYGCEADIVTYTALISGFCKWGMIDKGYS 363

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V DDM   GV P++  +  ++V   K  + ++     ++MK  G  PD+ +YN +I +  
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           K     +A+R++ EM+   + P   T+V ++N   + G L       ++M + G
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRG 477



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 13/191 (6%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG--- 71
            G LG RFF+ +       +  Y ++     ++V  L+  R+F  +  + ++M       
Sbjct: 110 AGNLGYRFFLWAT-----KQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPEL 164

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           ++P  +LF  L+      + ++      D+M   G  PD  V+  L+    K  +  +A 
Sbjct: 165 IEP--ELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEAS 222

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT-- 189
           ++FE+M++ +  PN + +  LL      G+L     ++  M  AG   D   +  L++  
Sbjct: 223 KVFEDMRE-KFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGY 281

Query: 190 AHTNKIPRADD 200
           AH  K+  A D
Sbjct: 282 AHAGKMADAYD 292



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           D+ +DM   G +P  + +  LI    +   R+ +      +M+  G   D+  Y  LIS 
Sbjct: 292 DLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+   + ++M+K  V P+  TY+ ++ A     Q +    ++  M   G   D
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
              Y  +I             A K+ E+ E  + W+ +E +G
Sbjct: 412 LLIYNVVIR-----------LACKLGEVKEAVRLWNEMEANG 442



 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 3/152 (1%)

Query: 34  RRNYANNASEYNTVVTSLT-SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           +R +  N + Y  ++ +L  +++R      V+ +M   G +     + +LI G  K   +
Sbjct: 299 KRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI 358

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
              +   D M+  G +P    Y  ++    K +  ++ + + E+MK+    P+   Y  +
Sbjct: 359 DKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVV 418

Query: 153 LNACAAAGQLDPVYAIVRDMTAAG--AGLDKF 182
           +      G++     +  +M A G   G+D F
Sbjct: 419 IRLACKLGEVKEAVRLWNEMEANGLSPGVDTF 450


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 12/304 (3%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   +N++V  L    R    R V+D+M+ +G+ P    +++L+ G  K   L ++
Sbjct: 218 NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 277

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                +M   G +PDV  +  LI    K  N +QA+ +  +M++  ++ N  T+  L++ 
Sbjct: 278 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
               G LD     V +M   G      CY  LI  +  K+ R  D A ++I  +E  +  
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYC-KLGRM-DLARELIREMEAKRVK 395

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKD 272
             V T        + G  K  + NL +A  +++   + G L   +T   +    C E + 
Sbjct: 396 PDVVTY----STIISGYCK--VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
             A E    ML+   + PD +     I  +   G+++    + ++ I     P    Y+ 
Sbjct: 450 NDACELFENMLQLGVQ-PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 508

Query: 333 LVEG 336
           L+ G
Sbjct: 509 LING 512



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 11/159 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  ++    +A  Y++++  L  ++R     +++++M+  GVQP    + +LI G  K 
Sbjct: 422 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      D+M   G LPDV  Y+ LI+   K   + +A R+  ++   +  P+   Y
Sbjct: 482 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+  C+ A +   V A+++           FC  GL+
Sbjct: 542 DALMLCCSKA-EFKSVVALLKG----------FCMKGLM 569



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/424 (20%), Positives = 149/424 (35%), Gaps = 46/424 (10%)

Query: 37  YANNASEYNTVV-----TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           YA +   YN V+      SL S RRF         M+  GV P    ++ L+       R
Sbjct: 114 YAPSVPAYNAVLLALSDASLPSARRFL------SSMLRHGVAPNVYTYNILVRALCARGR 167

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYV 150
           L++       M+  G  P+   YN L++   +    D A R+   M++    KPN  T+ 
Sbjct: 168 LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFN 227

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA-------HTNKIPRADDTAT 203
            ++N    AG+++    +  +M   G   D   Y  L++        H +    ++ T  
Sbjct: 228 SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQR 287

Query: 204 KIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR-------RGGFLSRL 256
            ++  V              N E  +  V++     L   E           + GFL   
Sbjct: 288 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347

Query: 257 L---------------TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
           L                 Y+   +   +L  +     L+  ++  R  PDV      I  
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISG 407

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
           Y   G++D+  ++ +  +     P A  Y++L+ G       K +  A +   NM    +
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC---EEKRLNDACELFENM--LQL 462

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADD 421
            + P   +   L+    K G    A  + D M  + + P +       NGL       + 
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 422 PRLV 425
            RL+
Sbjct: 523 HRLL 526



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G+ P V  YN ++       +   A R    M ++ V PN  TY  L+ A  A G+L+  
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKIIELVEQ 211
             +V DM  AG   +   Y  L+ A      RA   D A +++ L+ +
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFC----RAGELDGAERVVSLMRE 215


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +N   N+  YNT++ +            ++DDM   G+ PT   + SLI G     
Sbjct: 688 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIG 747

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R++D     D+M+  G LP+V  Y  LI    K    D+ + + +EM  Y++ PN  TY 
Sbjct: 748 RMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYT 807

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            +++  + +G +     ++ +M   G   D   Y
Sbjct: 808 VMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 841



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R ++ N   + T++  L    RF        +M+L  ++P   L  +L+ G  K 
Sbjct: 477 EEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKE 536

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  D      ++   GF  ++   N LI    K  N  +A+R+ ++M +     +  TY
Sbjct: 537 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITY 596

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++ C   G+++  + +  +M   G   D F Y  LI
Sbjct: 597 NTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 635



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 112/277 (40%), Gaps = 13/277 (4%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +++LI G  K  ++++ F  R +M   G  PD   YN LI    +    D+A+ ++ E K
Sbjct: 596 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 655

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
             ++ PN  TY  +++    A +++    +  ++      L+   Y  LI A+       
Sbjct: 656 SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCR----- 710

Query: 199 DDTATKIIELVE--QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
           +    +  +L +  +SKG      + ++  + M  + + E       E   R+ G L  +
Sbjct: 711 NGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM--RKEGLLPNV 768

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVF 315
           +    +    C   +  + +  L EM   D     + Y VM  I  Y  SGD+    K+ 
Sbjct: 769 VCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM--IDGYSKSGDMKTAAKLL 826

Query: 316 EDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQD 351
            + +     P    Y  L  G    G   +G  LA+D
Sbjct: 827 HEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAED 863



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 14/248 (5%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R+   N   Y  ++       +      ++ +++   ++    ++++LI    +  
Sbjct: 653 ECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNG 712

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
              + F   D M++ G  P  A Y+ LI         + A  + +EM+K  + PN   Y 
Sbjct: 713 NTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYT 772

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD--TATKII-E 207
            L+      GQ+D V  ++++M++     +K  Y  +I  ++    ++ D  TA K++ E
Sbjct: 773 ALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS----KSGDMKTAAKLLHE 828

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
           +V   KG      + N   N      K E   L   + V    GF S L  + H AF AC
Sbjct: 829 MV--GKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGV----GFNSPLFLI-HEAFRAC 881

Query: 268 AELKDVQA 275
               D+ A
Sbjct: 882 TRRVDLWA 889



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 60/149 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L             + M+ DGV  T   +  LI G MK  +  +     
Sbjct: 347 NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVL 406

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +    GF P+  VYN LI    K  N   A+RI  +M    + PN  T   ++      
Sbjct: 407 KETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI 466

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           GQ++    I+ +M + G  ++   +  +I
Sbjct: 467 GQMEQAECILEEMLSRGFSINPGAFTTII 495



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           + M  GV P   LF + I    KG +++D       M+  G  P+V  YN LI    K  
Sbjct: 303 ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHG 362

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           N D+A R  E+M K  V     TY  L+N      + +   +++++    G   ++  Y 
Sbjct: 363 NLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYN 422

Query: 186 GLITAH 191
            LI  +
Sbjct: 423 TLIDGY 428



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 7/177 (3%)

Query: 35  RNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           R +  +   YNT+++    + +    F LR    +M+  G++P    ++ LI G  +  +
Sbjct: 587 RGFVLDKITYNTLISGCCKEGKVEEGFKLRG---EMVKQGIEPDTFTYNLLIHGMCRIGK 643

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           L +     ++ K+   +P+V  Y  +I    K    ++  ++F E+    ++ N   Y  
Sbjct: 644 LDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNT 703

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           L+ A    G     + +  DM + G       Y+ LI    N I R +D    I E+
Sbjct: 704 LIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCN-IGRMEDAKCLIDEM 759



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 63/146 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+  + +   ++T + +     +      ++ DM   GV P    +++LI G  K  
Sbjct: 303 ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHG 362

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L + F F+++M  +G    +  Y+ LI+   K +  ++A  + +E  +    PN   Y 
Sbjct: 363 NLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYN 422

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            L++     G L     I  DM + G
Sbjct: 423 TLIDGYCKMGNLGDALRIRGDMVSKG 448



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 71/376 (18%), Positives = 142/376 (37%), Gaps = 25/376 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L    +F     V  + +  G  P   ++++LI G  K   L D    R  M 
Sbjct: 386 YSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV 445

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+    N +I    K    +QA  I EEM       N   +  +++      + +
Sbjct: 446 SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFE 505

Query: 164 PVYAIVRDMTA----AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
                +R+M         GL      GL      K  +  D       L+E+  G + V 
Sbjct: 506 SALRFLREMLLRNMRPNDGLLTTLVGGLC-----KEGKHSDAVELWFRLLEKGFGANLVT 560

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRR---GGFLSRLLTVYHVAFHACAELKDVQAM 276
           T+       + G+ K    N+  A  + ++    GF+   +T   +    C E K  +  
Sbjct: 561 TNA-----LIHGLCKTG--NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGF 613

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +   EM+K+  + PD +     I      G +D    ++ +    +  P    Y  +++G
Sbjct: 614 KLRGEMVKQGIE-PDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 672

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
                    ++  +     + ++N+ L+  + +   L+ A  ++G    A  + D M+++
Sbjct: 673 YC---KADKIEEGEKLFTELLTQNLELNSVVYNT--LIRAYCRNGNTVEAFKLHDDMRSK 727

Query: 397 KITPSLPAVEAYYNGL 412
            I P+     +  +G+
Sbjct: 728 GIPPTTATYSSLIHGM 743


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +N   N+  YNT++ +            ++DDM   G+ PT   + SLI G     
Sbjct: 621 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIG 680

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R++D     D+M+  G LP+V  Y  LI    K    D+ + + +EM  Y++ PN  TY 
Sbjct: 681 RMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYT 740

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            +++  + +G +     ++ +M   G   D   Y
Sbjct: 741 VMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 774



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R ++ N   + T++  L    RF        +M+L  ++P   L  +L+ G  K 
Sbjct: 410 EEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKE 469

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  D      ++   GF  ++   N LI    K  N  +A+R+ ++M +     +  TY
Sbjct: 470 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITY 529

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++ C   G+++  + +  +M   G   D F Y  LI
Sbjct: 530 NTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 60/149 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L             + M+ DGV  T   +  LI G MK  +  +     
Sbjct: 280 NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVL 339

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +    GF P+  VYN LI    K  N   A+RI  +M    + PN  T   ++      
Sbjct: 340 KETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKI 399

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           GQ++    I+ +M + G  ++   +  +I
Sbjct: 400 GQMEQAECILEEMLSRGFSINPGAFTTII 428



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 105/261 (40%), Gaps = 12/261 (4%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +++LI G  K  ++++ F  R +M   G  PD   YN LI    +    D+A+ ++ E K
Sbjct: 529 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK 588

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
             ++ PN  TY  +++    A +++    +  ++      L+   Y  LI A+       
Sbjct: 589 SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCR----- 643

Query: 199 DDTATKIIELVE--QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
           +    +  +L +  +SKG      + ++  + M  + + E       E   R+ G L  +
Sbjct: 644 NGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM--RKEGLLPNV 701

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVF 315
           +    +    C   +  + +  L EM   D     + Y VM  I  Y  SGD+    K+ 
Sbjct: 702 VCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM--IDGYSKSGDMKTAAKLL 759

Query: 316 EDYICSEKFPPAELYATLVEG 336
            + +     P    Y  L  G
Sbjct: 760 HEMVGKGIVPDTVTYNVLTNG 780



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 68/162 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R+   N   Y  ++       +      ++ +++   ++    ++++LI    +  
Sbjct: 586 ECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNG 645

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
              + F   D M++ G  P  A Y+ LI         + A  + +EM+K  + PN   Y 
Sbjct: 646 NTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYT 705

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            L+      GQ+D V  ++++M++     +K  Y  +I  ++
Sbjct: 706 ALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS 747



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           + M  GV P   LF + I    KG +++D       M+  G  P+V  YN LI    K  
Sbjct: 236 ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHG 295

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           N D+A R  E+M K  V     TY  L+N      + +   +++++    G   ++  Y 
Sbjct: 296 NLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYN 355

Query: 186 GLITAH 191
            LI  +
Sbjct: 356 TLIDGY 361



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 124/312 (39%), Gaps = 24/312 (7%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
            R +  +   YNT+++    + +    F LR    +M+  G++P    ++ LI G  +  
Sbjct: 519 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRG---EMVKQGIEPDTFTYNLLIHGMCRIG 575

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L +     ++ K+   +P+V  Y  +I    K    ++  ++F E+    ++ N   Y 
Sbjct: 576 KLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYN 635

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L+ A    G     + +  DM + G       Y+ LI    N I R +D    I E+ +
Sbjct: 636 TLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCN-IGRMEDAKCLIDEMRK 694

Query: 211 QSKGWSSVETS---GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
           +    + V  +   G   +   M      L  + + + +H            Y V     
Sbjct: 695 EGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYD-IHPNK-------ITYTVMIDGY 746

Query: 268 AELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
           ++  D++    LL  +      PD   Y V+ N  C    G I+ G K+  DY+  E  P
Sbjct: 747 SKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFC--KEGKIEEGFKIC-DYMSQEGLP 803

Query: 326 PAEL-YATLVEG 336
             E+ Y TLV G
Sbjct: 804 LDEITYTTLVHG 815



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 3/186 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+  + +   ++T + +     +      ++ DM   GV P    +++LI G  K  
Sbjct: 236 ETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHG 295

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L + F F+++M  +G    +  Y+ LI+   K +  ++A  + +E  +    PN   Y 
Sbjct: 296 NLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYN 355

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++     G L     I  DM + G   +      +I     KI + +     + E++ 
Sbjct: 356 TLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFC-KIGQMEQAECILEEML- 413

Query: 211 QSKGWS 216
            S+G+S
Sbjct: 414 -SRGFS 418



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 71/376 (18%), Positives = 142/376 (37%), Gaps = 25/376 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L    +F     V  + +  G  P   ++++LI G  K   L D    R  M 
Sbjct: 319 YSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV 378

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+    N +I    K    +QA  I EEM       N   +  +++      + +
Sbjct: 379 SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFE 438

Query: 164 PVYAIVRDMTA----AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
                +R+M         GL      GL      K  +  D       L+E+  G + V 
Sbjct: 439 SALRFLREMLLRNMRPNDGLLTTLVGGLC-----KEGKHSDAVELWFRLLEKGFGANLVT 493

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRR---GGFLSRLLTVYHVAFHACAELKDVQAM 276
           T+       + G+ K    N+  A  + ++    GF+   +T   +    C E K  +  
Sbjct: 494 TNA-----LIHGLCKTG--NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGF 546

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +   EM+K+  + PD +     I      G +D    ++ +    +  P    Y  +++G
Sbjct: 547 KLRGEMVKQGIE-PDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 605

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
                    ++  +     + ++N+ L+  + +   L+ A  ++G    A  + D M+++
Sbjct: 606 YC---KADKIEEGEKLFTELLTQNLELNSVVYNT--LIRAYCRNGNTVEAFKLHDDMRSK 660

Query: 397 KITPSLPAVEAYYNGL 412
            I P+     +  +G+
Sbjct: 661 GIPPTTATYSSLIHGM 676


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 164/411 (39%), Gaps = 61/411 (14%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR Y  +   YN ++ +L    +   +  V+ DM     +P    +  +I  T K  
Sbjct: 67  ELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIG 126

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +  ++     +M   G+ P++  YN +I      +  D+ I +F +M +   +PNG T+ 
Sbjct: 127 KADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVENNCRPNGFTFS 186

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            +LN   A GQL  +  +V     +   ++K  YA L+    +K+  A +       +  
Sbjct: 187 VILNVLVAEGQLGRLDEVVE---VSNKFMNKSIYAYLVRT-LSKLGHASEAHRLFCNM-- 240

Query: 211 QSKGWSSVETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
               WS  +    +A   M+      G + E L  L     +H +   +S    +Y+   
Sbjct: 241 ----WSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSK---IHEKR--ISTDTVMYNTVL 291

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVY------------------------------- 293
            A  +LK    +  L E +K+D  SPD++                               
Sbjct: 292 SALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCK 351

Query: 294 --IVMQN--IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLA 349
             I+  N  I C   +GDID  H  F++       P    Y+TL+E   FG T K +++A
Sbjct: 352 PDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIE--CFGKTDK-VEMA 408

Query: 350 QDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
                 M +     SP + +  +L+   E+SG    A  ++  ++ + +TP
Sbjct: 409 CRLFDEMLAEGC--SPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 457



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S     R      +++++     +P    F+SLI    K   + +      +M+
Sbjct: 322 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 381

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI   GK    + A R+F+EM      PN  TY  LL+    +G+  
Sbjct: 382 EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTA 441

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   +   G   D   YA L
Sbjct: 442 EAVDLYAKLKQQGLTPDSITYAVL 465



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 50/115 (43%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +  L+   ++ +     F    +++  G+  D+  YN L+    K    DQ   +F++MK
Sbjct: 45  YKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMK 104

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           +   +P+  TY  ++      G+ D    + ++MT  G   +   Y  +I A  N
Sbjct: 105 RKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALAN 159


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 107/259 (41%), Gaps = 26/259 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++V+ +    RR+    D+ + M   GV P    ++S I    KG R ++      +M 
Sbjct: 290 YSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMT 349

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P V  YN   + C       +A+ + +EM    + PN  +Y   L+ACA  GQ +
Sbjct: 350 TVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWE 409

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW-------- 215
               ++R M+  G+  D   +   I A      R     T +  L E             
Sbjct: 410 KAVKLLRGMSTVGSDPDIISFNSAIDA----CGRGQQWETAVELLREMPTAGLTPNVITY 465

Query: 216 -SSVETSGNNAE-NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
            S++E  G +A   E MG+ +E    +PT      RG  LS  +  Y+    ACA+ +  
Sbjct: 466 NSAIEACGRSARWQEAMGLFRE----MPT------RG--LSPNVVTYNSMIDACAKGEQW 513

Query: 274 QAMETLLEMLKKDRKSPDV 292
           +    LL  +     +PDV
Sbjct: 514 ELAVQLLTGMPARGVAPDV 532



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   +    N   YN+ + +    RR+    D+ ++++  G  P+   ++ +I    KG
Sbjct: 206 EQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKG 265

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  +      QM  N    DV  Y+ +I+ CG+ +   +A+ + E+M+   V PN  +Y
Sbjct: 266 GRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISY 325

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
              ++ACA   +      ++R+MT  G
Sbjct: 326 NSAIDACAKGDRWKEALDLLREMTTVG 352



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 66/156 (42%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R  A +   YN+ + +     ++ L   +   M   G +P    ++S +    K  R ++
Sbjct: 526 RGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWRE 585

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  M   G  P+   Y   I  CGK +  D A+RI +EM+ +   PN  TY   ++
Sbjct: 586 ALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAID 645

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ACA  G+      ++ D+   G   D   Y  +I+A
Sbjct: 646 ACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISA 681



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 116/296 (39%), Gaps = 23/296 (7%)

Query: 6   SIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVY 64
           ++  ++ ++G  A GRR+       EE   + +  +   YN V+ +     R+    D+ 
Sbjct: 216 NLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLL 275

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
             M+ + +      + S+I    +G R ++     +QM+  G  P+V  YN  I  C K 
Sbjct: 276 GQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKG 335

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +A+ +  EM    + P   +Y     ACA  G+      ++++M A G   +   Y
Sbjct: 336 DRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISY 395

Query: 185 AGLITAHTN--------KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE 236
              + A           K+ R   T     +++  +   S+++  G   + E    + E 
Sbjct: 396 NSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFN---SAIDACGRGQQWE---TAVEL 449

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292
           L  +PTA       G    ++T Y+ A  AC      Q    L   +     SP+V
Sbjct: 450 LREMPTA-------GLTPNVIT-YNSAIEACGRSARWQEAMGLFREMPTRGLSPNV 497



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+ + +     R+     ++ +M   G+ P    ++S+I    KG + +      
Sbjct: 461 NVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLL 520

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M A G  PDV  YN  I  CGK +  + A+++ + M     KP+  +Y   + ACA +
Sbjct: 521 TGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKS 580

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+      +++DM   G   +   Y   I A
Sbjct: 581 GRWREALGLLKDMATVGLTPNTVSYGAAIHA 611



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 2/143 (1%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           A GR +    A  +E+     + + + YN  + + ++ R++     +  +M  +GV P  
Sbjct: 86  AKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDV 145

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKA--NGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
             ++S I    KG R ++      QM A   G  PDV  YN  I+ C       +A+ + 
Sbjct: 146 VTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLL 205

Query: 135 EEMKKYEVKPNGQTYVCLLNACA 157
           E+M    V PN  TY   + ACA
Sbjct: 206 EQMVAQGVPPNLITYNSAIGACA 228



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 2/149 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM--LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           YN+ + + +   R+    D+   M+   +G+ P    ++S I     G R ++     +Q
Sbjct: 148 YNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQ 207

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M A G  P++  YN  I  C K +  ++A+ + EE+ +    P+ +TY  +++ACA  G+
Sbjct: 208 MVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGR 267

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                 ++  M       D   Y+ +I A
Sbjct: 268 WLEAMDLLGQMLTNDIPADVISYSSVIAA 296



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 67/160 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R  + N   YN+++ +     ++ L   +   M   GV P    ++S I    KG 
Sbjct: 487 EMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGE 546

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + +        M   G  PD+  YN  ++ C K     +A+ + ++M    + PN  +Y 
Sbjct: 547 QWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYG 606

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             ++AC    Q D    I+++M   GA  +   Y+  I A
Sbjct: 607 AAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDA 646



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 65/161 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +  A N   YN+ + +     ++     +   M   G  P    F+S I    +G
Sbjct: 381 KEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRG 440

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +       +M   G  P+V  YN  I  CG+     +A+ +F EM    + PN  TY
Sbjct: 441 QQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTY 500

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +++ACA   Q +    ++  M A G   D   Y   I A
Sbjct: 501 NSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEA 541



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 63/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N+ + +    +++    ++  +M   G+ P    ++S I    + +R Q+      +M 
Sbjct: 430 FNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMP 489

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  YN +I  C K +  + A+++   M    V P+  +Y   + AC    Q +
Sbjct: 490 TRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWE 549

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +++ M   G   D   Y   +TA
Sbjct: 550 LALQLLKGMPTRGPKPDIISYNSAVTA 576



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           KG   +      D+ K +G   D   YN  I+ C   +    A+R+  EM    V P+  
Sbjct: 87  KGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVV 146

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL--DKFCYAGLITAHTN 193
           TY   + AC+  G+      ++  M A   G+  D   Y   I A +N
Sbjct: 147 TYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSN 194


>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
 gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 636

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 21/312 (6%)

Query: 44  YNTVVTSLTSQRRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           Y T++ +LTSQR F    +LL +V D     G++P    F++LI   ++  R+ +     
Sbjct: 117 YTTLLAALTSQRAFDTIPWLLAEVED----AGLRPDSIFFNALINALVEARRMGEATNTF 172

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM------KKYEVKPNGQTYVCLL 153
            +M  +G  P  + +N LI   G     +++ R+F+ M       +  V+PN  TY  L+
Sbjct: 173 LRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILV 232

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
            A   AG+L+  + +V  M A+GA  D   Y  L +A+       +D   +  ELV +  
Sbjct: 233 KAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAK-----NDETWRAEELVVEMA 287

Query: 214 GWSSVETSGNNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
             + + TS       + G  +E  L          +  G L  ++ V++       +  D
Sbjct: 288 QQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVI-VFNTLLKGFLDAND 346

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           + A++ +L ++++    PD+      +      G +    KVF+  I +   P  ++Y+ 
Sbjct: 347 MAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSI 406

Query: 333 LVEGAMFGYTPK 344
           L +G +    P+
Sbjct: 407 LAKGYVRAQQPE 418



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+  + +L+S         V+D M+  G++P   ++  L  G ++  + +       QM 
Sbjct: 369 YSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMG 428

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLL 153
             G  P+V  +  +IS  G C  +D   A+R++  M+   V+PN +T+  L+
Sbjct: 429 RLGVRPNVVTFTTVIS--GWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLI 478



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/120 (19%), Positives = 54/120 (45%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P   +F++L+ G +  + +         M+  G  PD+  Y++ ++      +  + 
Sbjct: 326 GVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKC 385

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +++F++M +  ++P+ Q Y  L      A Q +    ++R M   G   +   +  +I+ 
Sbjct: 386 MKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISG 445


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R  +  N   + +++     + +    ++V   M   G++P   +F +L+ G     
Sbjct: 226 EDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAG 285

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           ++ D +   + M+  GF P+V  Y  LI ++C   K  D+A+R+F EM++Y  + +  TY
Sbjct: 286 KMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTY 345

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++     G +D  Y+++ DM   G    +  Y  ++ AH  K     +   + +EL+
Sbjct: 346 TALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKK-----EQFEECLELI 400

Query: 210 EQSK 213
           E+ K
Sbjct: 401 EKMK 404



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           L+Q++ R  K +  A+  R FV      E  R     +   Y  +++             
Sbjct: 312 LIQALCRTEKRMDEAM--RVFV------EMERYGCEADIVTYTALISGFCKWGMIDKGYS 363

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V DDM   GV P++  +  ++V   K  + ++     ++MK  G  PD+ +YN +I +  
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           K     +A+R++ EM+   + P   T+V ++N   + G L       ++M + G
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRG 477



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 13/191 (6%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG--- 71
            G LG RFF+ +       +  Y ++     ++V  L+  R+F  +  + ++M       
Sbjct: 110 AGNLGYRFFLWAT-----KQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPEL 164

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           ++P  +LF  L+      + ++      D+M   G  PD  V+  L+    K  +  +A 
Sbjct: 165 IEP--ELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEAS 222

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT-- 189
           ++FE+M++ +  PN + +  LL      G+L     ++  M  AG   D   +  L++  
Sbjct: 223 KVFEDMRE-KFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGY 281

Query: 190 AHTNKIPRADD 200
           AH  K+  A D
Sbjct: 282 AHAGKMADAYD 292



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           D+ +DM   G +P  + +  LI    +   R+ +      +M+  G   D+  Y  LIS 
Sbjct: 292 DLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+   + ++M+K  V P+  TY+ ++ A     Q +    ++  M   G   D
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
              Y  +I             A K+ E+ E  + W+ +E +G
Sbjct: 412 LLIYNVVIR-----------LACKLGEVKEAVRLWNEMEANG 442



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 3/152 (1%)

Query: 34  RRNYANNASEYNTVVTSLT-SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           +R +  N + Y  ++ +L  +++R      V+ +M   G +     + +LI G  K   +
Sbjct: 299 KRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI 358

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
              +   D M+  G +P    Y  ++    K +  ++ + + E+MK+    P+   Y  +
Sbjct: 359 DKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVV 418

Query: 153 LNACAAAGQLDPVYAIVRDMTAAG--AGLDKF 182
           +      G++     +  +M A G   G+D F
Sbjct: 419 IRLACKLGEVKEAVRLWNEMEANGLSPGVDTF 450


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 41/270 (15%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y   VT+     R+     V++ M   G++     F + I    +G   +      
Sbjct: 286 NMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALL 345

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M+  G  P V  ++  IS CGK +   +A+ +  EM++  V PN  ++   ++AC  A
Sbjct: 346 DEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRA 405

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           GQ     +++  M++AG                  +PR   T   +I    + K W+   
Sbjct: 406 GQWRAALSLLDKMSSAG------------------VPRGTITYNAVIAACGKGKEWARAV 447

Query: 220 TSGNNAENEMM-GVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
           +       EM+ G +K   ++  +P A+ V             Y  A  AC    + +  
Sbjct: 448 S----VLREMLAGQAKTDGDMAPVPMADVVS------------YSAAIDACVRAGEWEEA 491

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
            +L+E+L++DR+   + +  + +R Y H G
Sbjct: 492 ISLVELLRRDRR---LNVGTEGVR-YYHPG 517



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ-- 101
           Y+ +++++    R+  +  + D M  +GV P    F + +    KG + +      DQ  
Sbjct: 72  YSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQRA 131

Query: 102 ------MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                 M A G  P+V  ++  ++ CG     ++A+ + ++M +  V PN  T+   ++A
Sbjct: 132 LRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSA 191

Query: 156 CAAAGQLDPVYAIVRDMTAA 175
           C  AGQ  P   I+R M AA
Sbjct: 192 CGKAGQWRPALTILRRMRAA 211



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 2/170 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A    + N + +++ V +  +  ++     + D M  +GV P    F + +    K  
Sbjct: 137 EMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAG 196

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + +       +M+A    P+V  Y   I  CGK      A  +  EM++  V PN  T+ 
Sbjct: 197 QWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFN 256

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
             ++A    GQ      ++RDM + G   + + Y   +TA    N+  RA
Sbjct: 257 SAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARA 306



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 4/145 (2%)

Query: 49  TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108
            +L  QR   LL     +M   G+ P    F S +       + +      DQM   G  
Sbjct: 124 VALLDQRALRLL----GEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVP 179

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P+   ++  +S CGK      A+ I   M+     PN QTY   ++AC  AG+      +
Sbjct: 180 PNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGL 239

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTN 193
           + +M   G   +   +   I+A  N
Sbjct: 240 LAEMREKGVAPNVITFNSAISALGN 264



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 58/137 (42%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   Y   + +      + L + +  +M   GV P    F+S I     G + Q+ 
Sbjct: 212 NCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEA 271

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                 M + G  P++  Y   ++ CG      +A+ + E+M+   ++ +  ++   ++A
Sbjct: 272 LNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDA 331

Query: 156 CAAAGQLDPVYAIVRDM 172
           CA  G  +   A++ +M
Sbjct: 332 CAQGGAWEMALALLDEM 348



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 11/157 (7%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMML---DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + ++ +L SQ R    ++      L   DGV      +  L+    +  R ++     D 
Sbjct: 35  SKLIQTLKSQGRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDV 94

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAI--------RIFEEMKKYEVKPNGQTYVCLL 153
           M++ G  PD   +   ++ C K    ++A+        R+  EM    + PN  T+   +
Sbjct: 95  MRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAV 154

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            AC  AGQ +    ++  M   G   ++F ++  ++A
Sbjct: 155 AACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSA 191


>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
          Length = 634

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 21/312 (6%)

Query: 44  YNTVVTSLTSQRRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           Y T++ +LTSQR F    +LL +V D     G++P    F++LI   ++  R+ +     
Sbjct: 117 YTTLLAALTSQRAFDTIPWLLAEVED----AGLRPDSIFFNALINALVEARRMGEATNTF 172

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM------KKYEVKPNGQTYVCLL 153
            +M  +G  P  + +N LI   G     +++ R+F+ M       +  V+PN  TY  L+
Sbjct: 173 LRMGHSGCRPTASTFNTLIKGYGIAGRPEESQRVFDMMASGGAGGEAAVRPNLTTYNILV 232

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
            A   AG+L+  + +V  M A+GA  D   Y  L +A+       +D   +  ELV +  
Sbjct: 233 KAWCDAGRLEEAWRVVARMRASGADPDVVTYNTLASAYAK-----NDETWRAEELVVEMA 287

Query: 214 GWSSVETSGNNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
             + + TS       + G  +E  L          +  G L  ++ V++       +  D
Sbjct: 288 QQAGLRTSERTWGIIVGGYCREGRLGEALRCVRQMKDSGVLPNVI-VFNTLLKGFLDAND 346

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           + A++ +L ++++    PD+      +      G +    KVF+  I +   P  ++Y+ 
Sbjct: 347 MAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSI 406

Query: 333 LVEGAMFGYTPK 344
           L +G +    P+
Sbjct: 407 LAKGYVRAQQPE 418



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+  + +L+S         V+D M+  G++P   ++  L  G ++  + +       QM 
Sbjct: 369 YSHQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMG 428

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLL 153
             G  P+V  +  +IS  G C  +D   A+R++  M+   V+PN +T+  L+
Sbjct: 429 RLGVRPNVVTFTTVIS--GWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLI 478



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/120 (19%), Positives = 54/120 (45%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P   +F++L+ G +  + +         M+  G  PD+  Y++ ++      +  + 
Sbjct: 326 GVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSHQLNALSSMGHMAKC 385

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +++F++M +  ++P+ Q Y  L      A Q +    ++R M   G   +   +  +I+ 
Sbjct: 386 MKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNVVTFTTVISG 445


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 12/304 (3%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   +N++V  L    R    R V+D+M+ +G+ P    +++L+ G  K   L ++
Sbjct: 218 NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 277

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                +M   G +PDV  +  LI    K  N +QA+ +  +M++  ++ N  T+  L++ 
Sbjct: 278 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
               G LD     V +M   G      CY  LI  +  K+ R  D A ++I  +E  +  
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYC-KLGRM-DLARELIREMEAKRVK 395

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKD 272
             V T        + G  K  + NL +A  +++   + G L   +T   +    C E + 
Sbjct: 396 PDVVTY----STIISGYCK--VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
             A E    ML+   + PD +     I  +   G+++    + ++ I     P    Y+ 
Sbjct: 450 NDACELFENMLQLGVQ-PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 508

Query: 333 LVEG 336
           L+ G
Sbjct: 509 LING 512



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 11/149 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y++++  L  ++R     +++++M+  GVQP    + +LI G  K   ++      
Sbjct: 432 DAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G LPDV  Y+ LI+   K   + +A R+  ++   +  P+   Y  L+  C+ A
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKA 551

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            +   V A+++           FC  GL+
Sbjct: 552 -EFKSVVALLKG----------FCMKGLM 569



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/424 (20%), Positives = 149/424 (35%), Gaps = 46/424 (10%)

Query: 37  YANNASEYNTVV-----TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           YA +   YN V+      SL S RRF         M+  GV P    ++ L+       R
Sbjct: 114 YAPSVPAYNAVLLALSDASLPSARRFL------SSMLRHGVAPNVYTYNILVRALCARGR 167

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYV 150
           L++       M+  G  P+   YN L++   +    D A R+   M++    KPN  T+ 
Sbjct: 168 LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFN 227

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA-------HTNKIPRADDTAT 203
            ++N    AG+++    +  +M   G   D   Y  L++        H +    ++ T  
Sbjct: 228 SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQR 287

Query: 204 KIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR-------RGGFLSRL 256
            ++  V              N E  +  V++     L   E           + GFL   
Sbjct: 288 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347

Query: 257 L---------------TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
           L                 Y+   +   +L  +     L+  ++  R  PDV      I  
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISG 407

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
           Y   G++D+  ++ +  +     P A  Y++L+ G       K +  A +   NM    +
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC---EEKRLNDACELFENM--LQL 462

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADD 421
            + P   +   L+    K G    A  + D M  + + P +       NGL       + 
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEA 522

Query: 422 PRLV 425
            RL+
Sbjct: 523 HRLL 526



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G+ P V  YN ++       +   A R    M ++ V PN  TY  L+ A  A G+L+  
Sbjct: 113 GYAPSVPAYNAVLLALSD-ASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKIIELVEQ 211
             +V DM  AG   +   Y  L+ A      RA   D A +++ L+ +
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFC----RAGELDGAERVVSLMRE 215


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 12/304 (3%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   +N++V  L    R    R V+D+M+ +G+ P    +++L+ G  K   L ++
Sbjct: 76  NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 135

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                +M   G +PDV  +  LI    K  N +QA+ +  +M++  ++ N  T+  L++ 
Sbjct: 136 LAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 195

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
               G LD     V +M   G      CY  LI  +  K+ R  D A ++I  +E  +  
Sbjct: 196 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYC-KLGRM-DLARELIREMEAKRVK 253

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKD 272
             V T        + G  K  + NL +A  +++   + G L   +T   +    C E + 
Sbjct: 254 PDVVTY----STIISGYCK--VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 307

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
             A E    ML+   + PD +     I  +   G+++    + ++ I     P    Y+ 
Sbjct: 308 NDACELFENMLQLGVQ-PDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSV 366

Query: 333 LVEG 336
           L+ G
Sbjct: 367 LING 370



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 11/159 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  ++    +A  Y++++  L  ++R     +++++M+  GVQP    + +LI G  K 
Sbjct: 280 QKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 339

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      D+M   G LPDV  Y+ LI+   K   + +A R+  ++   +  P+   Y
Sbjct: 340 GNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 399

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+  C+ A +   V A+++           FC  GL+
Sbjct: 400 DALMLCCSKA-EFKSVVALLKG----------FCMKGLM 427



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 74/389 (19%), Positives = 136/389 (34%), Gaps = 35/389 (8%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GV P    ++ L+       RL++       M+  G  P+   YN L++   +   
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 127 SDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
            D A R+   M++    KPN  T+  ++N    AG+++    +  +M   G   D   Y 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 186 GLITA-------HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
            L++        H +    ++ T   ++  V              N E  +  V++    
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 239 NLPTAEYVHR-------RGGFLSRLL---------------TVYHVAFHACAELKDVQAM 276
            L   E           + GFL   L                 Y+   +   +L  +   
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             L+  ++  R  PDV      I  Y   G++D+  ++ +  +     P A  Y++L+ G
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 300

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
                  K +  A +   NM    + + P   +   L+    K G    A  + D M  +
Sbjct: 301 LC---EEKRLNDACELFENM--LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 355

Query: 397 KITPSLPAVEAYYNGLKDREVPADDPRLV 425
            + P +       NGL       +  RL+
Sbjct: 356 GVLPDVVTYSVLINGLSKSARTKEAHRLL 384


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATK- 204
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   + 
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
           I++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 IMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M++ G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 484

 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M  +G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGSGIKPNAITYSTLLPGLCN 267



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK +G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAAGA-GL--DKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T AG  GL  +KFC AG
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEKFCKAG 340


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATK- 204
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   + 
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
           I++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 IMKGLKPDKFTYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWXGSKLLKE 406



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M++ G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWXGSKLLKEMQRDG 411


>gi|224089785|ref|XP_002308813.1| predicted protein [Populus trichocarpa]
 gi|222854789|gb|EEE92336.1| predicted protein [Populus trichocarpa]
          Length = 270

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 4/184 (2%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           +EE        N   YN ++ ++   +R + ++  Y D++ +G+ P+   F +L+    +
Sbjct: 37  SEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTFAALLHAYGR 96

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
                D F    +MK  G   +V +YN ++++C    + D+A+ IFE+MK   +KP+  T
Sbjct: 97  ARYGDDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWT 156

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD---TATKI 205
           +  ++   +  G++  V   + +M  AG   + F    LI  +  K  R DD   T  +I
Sbjct: 157 FSSMITIFSCCGKVSEVENTLNEMFEAGFQPNIFILTSLIQCY-GKAQRIDDVVKTFNRI 215

Query: 206 IELV 209
            ELV
Sbjct: 216 FELV 219



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A+ ++T++        F    +V ++M   GV+P   +++ L+    +  R      F 
Sbjct: 13  DATTFSTLIRIYKVAGNFDGYLNVSEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFY 72

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             +  NG  P    +  L+   G+ +  D A +I+ EMK+  +  N   Y  +L  CA  
Sbjct: 73  QDIIDNGLSPSFVTFAALLHAYGRARYGDDAFKIYREMKEKGLGLNVVLYNSILAMCADL 132

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE 207
           G +D    I  DM ++G   D + ++ +IT  +   K+   ++T  ++ E
Sbjct: 133 GHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEVENTLNEMFE 182



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 41/216 (18%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MKA G  P++ +YN L+   G+ K   Q  + ++++    + P+  T+  LL+A   A
Sbjct: 38  EEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTFAALLHAYGRA 97

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
              D  + I R+M   G GL+   Y  ++ A    +   D    K +E+ E  K      
Sbjct: 98  RYGDDAFKIYREMKEKGLGLNVVLYNSIL-AMCADLGHVD----KAVEIFEDMK------ 146

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           +SG   ++                          S ++T+    F  C ++ +V+   TL
Sbjct: 147 SSGIKPDSWT-----------------------FSSMITI----FSCCGKVSEVE--NTL 177

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
            EM +   + P+++I+   I+CY  +  ID+  K F
Sbjct: 178 NEMFEAGFQ-PNIFILTSLIQCYGKAQRIDDVVKTF 212



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV---GTM 87
           E   +    N   YN+++             ++++DM   G++P    F S+I       
Sbjct: 109 EMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCG 168

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           K S +++T    ++M   GF P++ +   LI   GK +  D  ++ F  + +  + P+ +
Sbjct: 169 KVSEVENTL---NEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVKTFNRIFELVITPDDR 225

Query: 148 TYVCLLNA 155
              CLLN 
Sbjct: 226 FCGCLLNV 233


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 4/195 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   ++++V S+    R      +Y +M   G++ +  ++ SLI    K 
Sbjct: 347 QEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKA 406

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L       D+MK  GF P+  +Y  +I    K    D A  IF++M K    P   TY
Sbjct: 407 GKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTY 466

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            CLL   AA+GQ+D    +   MT AG       Y  L+T   +K  +  D A KI  L+
Sbjct: 467 SCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLLASK--KLVDVAAKI--LL 522

Query: 210 EQSKGWSSVETSGNN 224
           E      SV+ S ++
Sbjct: 523 EMKAMGFSVDVSASD 537



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +AS Y  ++ SL    R  +   ++ +M    ++P+  +F SL+    K  RL  +    
Sbjct: 322 DASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIY 381

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G     ++Y  LI    K    D A+R+++EMKK   +PN   Y  ++ + A +
Sbjct: 382 MEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKS 441

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           G+LD   +I +DM  AG       Y+ L+  H
Sbjct: 442 GKLDIATSIFKDMDKAGFLPTPSTYSCLLEMH 473



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 25/279 (8%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN ++TS  ++   +   ++Y+ M           +  +I    K  RL   F   
Sbjct: 287 DTQTYNALITSFLNKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLF 346

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK     P   +++ L+   GK    D +++I+ EM+ + ++ +   YV L+ +   A
Sbjct: 347 QEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKA 406

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+LD    +  +M  AG   +   Y  +I +H        D AT I + ++++    +  
Sbjct: 407 GKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKS--GKLDIATSIFKDMDKAGFLPTPS 464

Query: 220 TSGNNAENEMMGVSKE-----ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           T   +   EM   S +     +LYN  T   +       + LLT+      A  +L DV 
Sbjct: 465 T--YSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLL-----ASKKLVDVA 517

Query: 275 AMETLLEM----LKKDRKSPDVYIVMQNIRCYLHSGDID 309
           A + LLEM       D  + DV +V      Y+  G +D
Sbjct: 518 A-KILLEMKAMGFSVDVSASDVLMV------YIKDGSVD 549



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 63/150 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L    +  L    +  +   G +     +++LI   +        F   + M+
Sbjct: 256 YNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQ 315

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A     D + Y  +I    K    D A ++F+EMK+ +++P+   +  L+++   +G+LD
Sbjct: 316 AAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLD 375

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               I  +M   G       Y  LI ++T 
Sbjct: 376 TSMKIYMEMQGFGLRSSASMYVSLIESYTK 405


>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 484

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + RF + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  D+A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPGLCN 267



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 19/202 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAGLITA 190
           Y    +   +  L+++    G LD    +++ M      T A   G  ++ FC AG    
Sbjct: 285 YMAPTDNSIFXRLISSQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAG---Q 341

Query: 191 HTNKIPRADDTATKIIELVEQS 212
           H   +   D    K I L  QS
Sbjct: 342 HDKAVKLLDKLIEKDIILRPQS 363


>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 476

 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 110 YNALFKVILRRGRYMMGKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETAIRFFEDMK 169

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 170 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 229

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 230 DALRLVEEMKGFGTKPNAITYSTLLPGLCN 259



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 163 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 216

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 217 TLIKGYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 276

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAAGA-GL--DKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T AG  GL  + FC AG
Sbjct: 277 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAG 332


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 76/150 (50%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   ++ + R+ + +  ++ M+ +G++PTR  F+ LI G     +++    F + MK
Sbjct: 118 YDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK+ ++ P   TY  L+   A+  ++D
Sbjct: 178 SREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGLGIKPNAITYSTLLPGLCN 267



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R    +   YNT++      ++       + +M    + PT   + 
Sbjct: 171 RFF------EDMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G     R+ D     ++MK  G  P+   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YVAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEYYCKAG 340


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/378 (19%), Positives = 164/378 (43%), Gaps = 16/378 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V +LT Q+RF  +  +  +M   G++P   L +++I    +   +++      +M+
Sbjct: 95  YTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKME 154

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   G  +  ++++++ E M +   +KPN +TY  L+ A      +
Sbjct: 155 ESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSI 214

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
              + +V  M A+G   D   Y  L  A+       +   + I++++ +       + + 
Sbjct: 215 KEAWNVVHQMLASGVQPDVVTYNTLARAYAQD-GETNKAESIIVDMLNK-------KVNP 266

Query: 223 NNAENEMMGVSKEELYNLPTA-EYVHR-RGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
           N     ++     E  NL  A   V+R R   +   L +++       ++ D   ++  L
Sbjct: 267 NERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKAL 326

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            M+++    PDV      +  +  +G +D   ++F+D + S   P   +++ L +    G
Sbjct: 327 TMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAK----G 382

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
           +   G  +  ++L+N  S+   + P +     +++    +G    A  +++ M    ++P
Sbjct: 383 FVRAGEPVKAESLLNFMSK-YGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSP 441

Query: 401 SLPAVEAYYNGLKDREVP 418
           +L   E    G  + + P
Sbjct: 442 NLKTFETLIWGYGEAKQP 459


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 123/293 (41%), Gaps = 6/293 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++ +    R F   + V  +M   G       ++ LI G  +   +++ F F+  M+
Sbjct: 120 YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 179

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD   Y  LI+   K + S++A  + +EM   E+KPN   Y  L++     G  D
Sbjct: 180 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 239

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             + ++++M AAG   +K  Y  L+     K+ + D  +  + ++V  S    ++ T   
Sbjct: 240 EAFKMIKEMVAAGVQPNKITYDNLVRGLC-KMGQMDRASLLLKQMVRDSHRPDTI-TYNL 297

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
             E      +K++ + L +          +S  +  Y +  H   +  + +    LLE +
Sbjct: 298 IIEGHFRHHNKKDAFRLLS----EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 353

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                 P+ ++    I  Y   G++    ++F+        P    Y +L+ G
Sbjct: 354 TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG 406



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 10/310 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    NA  Y  +++    +    L  +++D M    V P    ++SLI G  K 
Sbjct: 351 EEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKV 410

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            R++++  +  QM+  G LP+   Y+ LI   G  KN D   A ++ + M    +KPN  
Sbjct: 411 GRVEESTKYFAQMQERGLLPNEFTYSGLIH--GYLKNGDLESAEQLVQRMLDTGLKPNDV 468

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
            Y+ LL +   +  ++ V +  + M   G  LD   Y  LI  H        + A +++ 
Sbjct: 469 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI--HNLSSSGNMEAAFRVLS 526

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            +E++     V    +          +E+ + +   + + ++G  +   +  Y+      
Sbjct: 527 EIEKNGSVPDVHVYSSLISGLCKTADREKAFGI--LDEMSKKG--VDPNIVCYNALIDGL 582

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +  D+     +   +      P+       I      GDI N   ++ + + +   P A
Sbjct: 583 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 642

Query: 328 ELYATLVEGA 337
            +Y+ L  G 
Sbjct: 643 FVYSVLTTGC 652



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 116/284 (40%), Gaps = 22/284 (7%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D+ ++M   G++P   ++  LI G  +   +       D+M     LPD+  YN LI   
Sbjct: 348 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 407

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    +++ + F +M++  + PN  TY  L++     G L+    +V+ M   G   + 
Sbjct: 408 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 467

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             Y  L+ ++     ++DD     IE V  S  + S+   G   +N + G+    ++NL 
Sbjct: 468 VIYIDLLESYF----KSDD-----IEKV--SSTFKSMLDQGVMLDNRIYGIL---IHNLS 513

Query: 242 TAEYVHRRGGFLSRL--------LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
           ++  +      LS +        + VY        +  D +    +L+ + K    P++ 
Sbjct: 514 SSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 573

Query: 294 IVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
                I     SGDI     VF   +     P    Y +L++G+
Sbjct: 574 CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGS 617



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +++    N   YN ++  L         R+V++ ++  G+ P    + SLI G+ K 
Sbjct: 561 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 620

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
             + + F+  ++M A G  PD  VY+ L + C    + +QA+ + EEM
Sbjct: 621 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 16/190 (8%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           I  H+ S  G +   F V S    E  +     +   Y+++++ L           + D+
Sbjct: 507 ILIHNLSSSGNMEAAFRVLS----EIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 562

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   GV P    +++LI G  K   +       + + A G +P+   Y  LI   G CK 
Sbjct: 563 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLID--GSCKV 620

Query: 127 SD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG------ 178
            D   A  ++ EM    + P+   Y  L   C++AG L+    ++ +M   G        
Sbjct: 621 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFN 680

Query: 179 --LDKFCYAG 186
             +D FC  G
Sbjct: 681 NLVDGFCKRG 690



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 153/402 (38%), Gaps = 58/402 (14%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ +V  L    +      +   M+ D  +P    ++ +I G  +    +D F   
Sbjct: 256 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLL 315

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+  G  P+V  Y Y I + G C++ +  +A  + EEM    +KPN   Y  L++   
Sbjct: 316 SEMENAGISPNV--YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 373

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
             G +     I   MT      D +CY  LI    +K+ R +++     ++ E+    + 
Sbjct: 374 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNE 432

Query: 218 VETSG-----------NNAE-------------NEMMGVSKEELYNLPTAEYVHRRGGFL 253
              SG            +AE             N+++ +   E Y    ++ + +     
Sbjct: 433 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF--KSDDIEKVSSTF 490

Query: 254 SRLLT--------VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
             +L         +Y +  H  +   +++A   +L  ++K+   PDV++    I     +
Sbjct: 491 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKT 550

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF--- 362
            D +    + ++       P    Y  L++G           L +   ++  +RN+F   
Sbjct: 551 ADREKAFGILDEMSKKGVDPNIVCYNALIDG-----------LCKSGDISY-ARNVFNSI 598

Query: 363 ----LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
               L P   +   L+    K G  + A Y+++ M A  ITP
Sbjct: 599 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITP 640



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 134/347 (38%), Gaps = 12/347 (3%)

Query: 67  MMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           MM D G+ P+    ++L+   ++   +   +  R+ M   G  PDV  Y+ LI    K +
Sbjct: 72  MMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVR 131

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
             D A ++  EM++     N  TY  L+     +G ++  +   +DM   G   D F Y 
Sbjct: 132 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 191

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
            LI        R  + A  +++ +  ++   +V    N  +  M   + +E + +   E 
Sbjct: 192 ALINGLCKS--RRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM-IKEM 248

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
           V    G     +T  ++    C ++  +     LL+ + +D   PD       I  +   
Sbjct: 249 V--AAGVQPNKITYDNLVRGLC-KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRH 305

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSP 365
            +  +  ++  +   +   P    Y+ ++ G      P   + A D L  M ++   L P
Sbjct: 306 HNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEP---EKASDLLEEMTTKG--LKP 360

Query: 366 RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
                  L++   + G  + A  I+D M    + P L    +   GL
Sbjct: 361 NAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 407


>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 484

 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVZEMKGXGIKPNAITYSTLLPGLCN 267



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAAGAG---LDKFCYAG 186
           Y    +   ++ L+ +   +G LD    +++ M      T AG     ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLIXSHCKSGNLDAAADVLKAMIRLSVPTEAGHXGXLIENFCKVG 340


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 118/304 (38%), Gaps = 41/304 (13%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE  R+ Y +    YNT+++ L   RR     D+Y ++M  G  PT   +  L+ G +K 
Sbjct: 814  EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 873

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             R++D     ++M   G   +  +YN L++      N+++   +F++M    + P+ ++Y
Sbjct: 874  GRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSY 933

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              +++    AGQL+      R +   G   D   Y  LI     K  R ++  +      
Sbjct: 934  TIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG-LGKSKRLEEAVSLF---- 988

Query: 210  EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
                             NEM                  ++ G +  L T   +  H    
Sbjct: 989  -----------------NEM------------------QKKGIVPNLYTYNSLILHLGKA 1013

Query: 270  LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
             K  +A +   E+L K  K P+V+     IR Y  SG  D+ +  +   I     P +  
Sbjct: 1014 GKAAEAGKMYEELLTKGWK-PNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1072

Query: 330  YATL 333
            Y  L
Sbjct: 1073 YMQL 1076



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 1/176 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y  V+ +L    R F   +++D+M   G+ P +  ++SLI G +K  R  D  
Sbjct: 331 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDAL 390

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M  +G  P+   +   I+  GK   S +AI+ +E MK   + P+      +L   
Sbjct: 391 ELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 450

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           A +G+L     +  ++ A G   D   Y  +I    +K  + D+      +++E +
Sbjct: 451 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKC-CSKASKFDEAVKIFYDMIENN 505



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN +V  L          +VY  MM+DGV P+   +  L+V   K   ++   +  
Sbjct: 159 NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLL 218

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+A+G  P+V  Y   I V G+ K  D+A RI  +M+    KP+  T+  L+     A
Sbjct: 219 REMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDA 278

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G++     +   M  +    D+  Y  L+
Sbjct: 279 GRISDAKDVFWKMKKSDQKPDRVTYITLL 307



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L    R  + + V+ ++   GV P    +  +I    K S+  +       M  
Sbjct: 444 NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIE 503

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N  +PDV   N LI    K    D+A RIF ++K+  ++P   TY  LL      G++  
Sbjct: 504 NNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKE 563

Query: 165 VYAIVRDM 172
           V  ++ +M
Sbjct: 564 VMHLLEEM 571



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M  DG       + ++I    +  R+ +     D+MK  G +P+   YN LIS  
Sbjct: 321 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 380

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            K      A+ +F+ M  +  KPNG T+V  +N    +G+
Sbjct: 381 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGE 420



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 49/111 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L   +R      ++++M   G+ P    ++SLI+   K  +  +     +++ 
Sbjct: 968  YNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL 1027

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              G+ P+V  YN LI       ++D A   +  M      PN  TY+ L N
Sbjct: 1028 TKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQLPN 1078



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 43  EYNTVVTSLTSQRRFFLLRD----VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +Y T+ T L S  +  L+++    + D  +  G +  R   HSL+ G +K + ++ +  F
Sbjct: 648 DYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEF 707

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            + + ++G   D      LI    K K + +A  + ++ K + V      Y  L+     
Sbjct: 708 AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVD 767

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +D    +  +M   G G D+F Y  L+ A
Sbjct: 768 ENLIDIAEGLFAEMKELGCGPDEFTYNLLLDA 799



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 57/145 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++   +   +F     ++ DM+ +   P     +SLI    K  R  + +    Q+K
Sbjct: 478 YTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLK 537

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P    YN L++  G+     + + + EEM      PN  TY  +L+     G ++
Sbjct: 538 EMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVN 597

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++  MT  G   D   Y  +I
Sbjct: 598 DALDMLYSMTTKGCIPDLSSYNTVI 622



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + +   +  + ++M      P    +++++    K   + D       M 
Sbjct: 548 YNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 607

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD++ YN +I    K +  ++A  IF +MKK  + P+  T   +L +    G + 
Sbjct: 608 TKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLI-PDYATLCTILPSFVKIGLMK 666

Query: 164 PVYAIVRD 171
               I++D
Sbjct: 667 EALHIIKD 674



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 56/296 (18%), Positives = 112/296 (37%), Gaps = 12/296 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  ++  L    R    +DV+  M     +P R  + +L+         Q      + MK
Sbjct: 268 HTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMK 327

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G+  +V  Y  +I    +     +A+ +F+EMK+  + P   +Y  L++    A +  
Sbjct: 328 ADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFG 387

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE--QSKGWSSVETS 221
               + + M   G   + + +   I  +          + K I+  E  +SKG      +
Sbjct: 388 DALELFKHMDIHGPKPNGYTHVLFINYYGK-----SGESIKAIQRYELMKSKGIVPDVVA 442

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLL 280
           GN     + G++K     +    +   +   +S     Y +    C++     +A++   
Sbjct: 443 GNAV---LFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFY 499

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +M++ +   PDV  V   I     +G  D   ++F         P    Y TL+ G
Sbjct: 500 DMIENN-CVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAG 554


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 122/301 (40%), Gaps = 14/301 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L  +       ++ ++M   G  P    +++L+ G  K           
Sbjct: 79  NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIH 138

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  NG  P V  Y  LI+   K +N ++A+  F++M+   ++PN +TY  L++  +  
Sbjct: 139 AEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQ 198

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G L+  Y I+ +MT +G       Y   I  H   + R ++    + E+VE+      V 
Sbjct: 199 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC-VLERMEEALGVVQEMVEKGLAPDVVS 257

Query: 220 ----TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
                SG   + E+     +  + +   E V +  G     +T   +    C   +  +A
Sbjct: 258 YSTIISGFCRKGEL-----DRAFQM-KQEMVEK--GVSPDAVTYSSLIQGLCEMRRLTEA 309

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            +   EML      PD +     I  Y   GD++    + ++ I     P A  Y+ L+ 
Sbjct: 310 CDLSQEMLDMGL-PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 368

Query: 336 G 336
           G
Sbjct: 369 G 369



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R   + +   Y  ++ S+   R      + +D M + G++P    + +LI G  +  
Sbjct: 140 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 199

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQT 148
            L + +   ++M  +GF P V  YN  I   G C  +  ++A+ + +EM +  + P+  +
Sbjct: 200 LLNEAYRILNEMTESGFSPSVVTYNAFIH--GHCVLERMEEALGVVQEMVEKGLAPDVVS 257

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII 206
           Y  +++     G+LD  + + ++M   G   D   Y+ LI       ++  A D + +++
Sbjct: 258 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML 317

Query: 207 EL 208
           ++
Sbjct: 318 DM 319



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +  +   YNT++     +  F     ++ +M+ +GV P+   + +LI    K 
Sbjct: 104 EEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKA 163

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L     F DQM+  G  P+   Y  LI    +    ++A RI  EM +    P+  TY
Sbjct: 164 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 223

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
              ++      +++    +V++M   G   D   Y+ +I+    K  + RA     +++E
Sbjct: 224 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE 283



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 149/396 (37%), Gaps = 19/396 (4%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   + N   YN ++    S          + +M  +G  P    +++LI    K  R+ 
Sbjct: 3   RSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRID 62

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVC 151
           + F     M + G  P++  YN +I+  G C+     +A  I EEM      P+  TY  
Sbjct: 63  EAFGLLKSMSSKGMQPNLISYNVIIN--GLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           LLN     G       I  +M   G       Y  LI    N + +A +   + +E  +Q
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALI----NSMCKARNL-NRAMEFFDQ 175

Query: 212 SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAEL 270
            +    +  +       + G S++ L N              S  +  Y+   H  C   
Sbjct: 176 MR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 234

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
           +  +A+  + EM++K   +PDV      I  +   G++D   ++ ++ +     P A  Y
Sbjct: 235 RMEEALGVVQEMVEKGL-APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY 293

Query: 331 ATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
           ++L++G        +   L+Q+ L      ++ L P   +   L+ A    G    A ++
Sbjct: 294 SSLIQGLCEMRRLTEACDLSQEML------DMGLPPDEFTYTTLINAYCVEGDLNKALHL 347

Query: 390 WDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLV 425
            D M  +   P         NGL  +    +  RL+
Sbjct: 348 HDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLL 383



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 11/159 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +  + +A  Y++++  L   RR     D+  +M+  G+ P    + +LI      
Sbjct: 279 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE 338

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L       D+M   GFLPD   Y+ LI+   K   + +A R+  ++   E  P+  TY
Sbjct: 339 GDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTY 398

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+  C+   +   V A+++           FC  GL+
Sbjct: 399 DTLIENCSNI-EFKSVVALIKG----------FCMKGLM 426



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 1/179 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E     ++ +   YN  +       R      V  +M+  G+ P    + ++I G  +  
Sbjct: 210 EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKG 269

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L   F  + +M   G  PD   Y+ LI    + +   +A  + +EM    + P+  TY 
Sbjct: 270 ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYT 329

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            L+NA    G L+    +  +M   G   D   Y+ LI    NK  R  +    + +L+
Sbjct: 330 TLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLING-LNKQARTREAKRLLFKLI 387



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 53/127 (41%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
            +E   +  A +   Y+T+++    +        +  +M+  GV P    + SLI G  +
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 302

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             RL +      +M   G  PD   Y  LI+      + ++A+ + +EM      P+  T
Sbjct: 303 MRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVT 362

Query: 149 YVCLLNA 155
           Y  L+N 
Sbjct: 363 YSVLING 369


>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 484

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNTITYSTLLPGLCN 267



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 8/192 (4%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
           Y    +   ++ L+++   +G  D    +++ M       +   Y  LI     K+ + D
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNPDAAADVLKAMIRLSVPTEAGHYGXLIXNFC-KVGQYD 343

Query: 200 DTATKIIELVEQ 211
                + +L+E+
Sbjct: 344 KAVKLLDKLIEK 355


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 41/286 (14%)

Query: 31   EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
            E  R+ Y +    YNT+++ L   +R     D+Y ++M +G  PT   +  L+ G +K  
Sbjct: 833  EMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAG 892

Query: 91   RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            ++ D     ++M   G  P+  +YN L++      N++   +IFE+M +  + P+ ++Y 
Sbjct: 893  KMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYT 952

Query: 151  CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             L++    AG+L+   +  R +   G   D   Y  LI     K  R ++          
Sbjct: 953  VLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDG-LGKSERIEEAVCLF----- 1006

Query: 211  QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
                            NEM                  ++ G +  L T   +  H     
Sbjct: 1007 ----------------NEM------------------KKKGIVPNLYTYNSLILHLGKAG 1032

Query: 271  KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
            K  +A +   E+L K  K P+V+     IR Y  SG  DN +  ++
Sbjct: 1033 KASEAAQMYEELLIKGWK-PNVFTYNALIRGYSVSGSTDNAYAAYD 1077



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            Y  ++ +L +  R       +  ++  G++P   +++ LI G  K  R+++     ++MK
Sbjct: 951  YTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMK 1010

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              G +P++  YN LI   GK   + +A +++EE+     KPN  TY  L+   + +G  D
Sbjct: 1011 KKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTD 1070

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLI 188
              YA   D  A G  L     +GL+
Sbjct: 1071 NAYA-AYDCVAVGVSLKTALISGLV 1094



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    +    + +  N V++SL    R  + + V+ ++   GV P    +  +I    K 
Sbjct: 447 EHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKA 506

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           S+  +   F   M   G +PDV   N LI    K    ++A ++F ++K+ +++P   TY
Sbjct: 507 SKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTY 566

Query: 150 VCLLNACAAAGQLDPVYAIVRDMT 173
             LL+     G++  V  ++ +MT
Sbjct: 567 NTLLSGLGREGKVKEVMHLLEEMT 590



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 1/174 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y  VV +L    R      V+D+M   G+ P +  ++SLI G +K        
Sbjct: 349 YNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRAL 408

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + M A G  P+   +   I+  GK   S +AI+ +E MK   + P+      +L++ 
Sbjct: 409 ELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSL 468

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           A +G+L     +  ++   G   D   Y  +I    +K  +AD+      ++VE
Sbjct: 469 ARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKC-CSKASKADEAMNFFSDMVE 521



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L          +VY  M+ DG+ P+   +  L+V   K   +    +  
Sbjct: 177 NGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLL 236

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M+A G  P+V  Y   I V G+    D+A +I  +M+    KP+  T+  ++     A
Sbjct: 237 NEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDA 296

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L     +   M A+    D+  Y  L+
Sbjct: 297 GRLSDAKDVFWKMKASDQKPDRVTYITLL 325



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 3/181 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++ S   +R    +  + ++M   GV+P    +   I    + +R  + +    +M+
Sbjct: 216 YSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKME 275

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  PDV  +  +I V         A  +F +MK  + KP+  TY+ LL+ C  +G   
Sbjct: 276 DSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQ 335

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            V  I   M A G   +   Y  ++ A   ++ R D+      E+ E  KG S  + S N
Sbjct: 336 SVMEIWNAMVADGYNDNIVSYTAVVDALC-QVGRLDEALAVFDEMKE--KGISPEQYSYN 392

Query: 224 N 224
           +
Sbjct: 393 S 393



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M+ DG       + +++    +  RL +     D+MK  G  P+   YN LIS  
Sbjct: 339 EIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGF 398

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ-LDPVY--------AIVRDM 172
            K    D+A+ +F  M      PNG T+V  +N    +GQ L  +          IV D+
Sbjct: 399 LKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDV 458

Query: 173 TAAGAGLDKFCYAG 186
            AA A L     +G
Sbjct: 459 AAANAVLSSLARSG 472



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 2/161 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM-KG 89
           E   R    N   Y   +  L    RF     +   M   G +P   + H++++  +   
Sbjct: 238 EMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDV-VTHTVVIQVLCDA 296

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D      +MKA+   PD   Y  L+  CG   +S   + I+  M       N  +Y
Sbjct: 297 GRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSY 356

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +++A    G+LD   A+  +M   G   +++ Y  LI+ 
Sbjct: 357 TAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISG 397



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 52/123 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + + DM+  G  P     +SLI    KG +  + +    Q+K     P    YN L+S  
Sbjct: 514 NFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGL 573

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+     + + + EEM      PN  TY  +L+  +  G+++    ++  MT  G   D 
Sbjct: 574 GREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDL 633

Query: 182 FCY 184
             Y
Sbjct: 634 SSY 636



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 54/133 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  V+  L    R    +DV+  M     +P R  + +L+         Q      + M 
Sbjct: 286 HTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMV 345

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G+  ++  Y  ++    +    D+A+ +F+EMK+  + P   +Y  L++    A   D
Sbjct: 346 ADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFD 405

Query: 164 PVYAIVRDMTAAG 176
               +   M A G
Sbjct: 406 RALELFNHMNACG 418


>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+ +L       L   VYDD+  DG+      F  L+ G  K  R+ +      +M+
Sbjct: 238 YNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVLVKGLCKCGRIDEMLEVLGRMR 297

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  Y  L+ +     N D  +R++EEMK+  V+P+ + Y  ++   A  G++ 
Sbjct: 298 ERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGLAKGGRVQ 357

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
             Y + R+M   G  +D+  Y  L+ A
Sbjct: 358 EGYELFREMKGKGCLVDRVIYGALVEA 384



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 1/157 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           ++R Y +N + YN +   L    +F     + + M   G  P+   F  LI      +R 
Sbjct: 156 SQRGYHHNFASYNALAYCLNRHHQFRAADQLPELMESQGKPPSEKQFEILIRMHSDANRG 215

Query: 93  QDTFFFRDQMKAN-GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
              +   ++M+   G  P V +YN ++    +  + D A+ +++++K+  +     T++ 
Sbjct: 216 LRVYHVYEKMRNKFGVKPRVFLYNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMV 275

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           L+      G++D +  ++  M       D F Y  L+
Sbjct: 276 LVKGLCKCGRIDEMLEVLGRMRERLCKPDVFAYTALV 312


>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 484

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNXIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKXG 340


>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 484

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKVG 340


>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXG 340


>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 481

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXG 340


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 44  YNTVVTS--LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           YNT++ +  + +Q R  L   VY  ++ DG  P    +++LI    K ++L        +
Sbjct: 252 YNTLIIACNMCNQPREALA--VYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQE 309

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M        V  Y+ LIS C K    + A+RIF EM++ +  PN  TY  L+ ACA  GQ
Sbjct: 310 MLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQ 369

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +    +   M A G   D   Y  LI+A+
Sbjct: 370 WEKAAEVFEQMNAHGCTPDVVTYTALISAY 399



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 66/152 (43%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N++ YN ++++     +     +VY +M+   +  +   + SLI    K  + +   
Sbjct: 280 FTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETAL 339

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              ++M+ +  +P+   YN L++ C +    ++A  +FE+M  +   P+  TY  L++A 
Sbjct: 340 RIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAY 399

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              GQ          M   G   D   Y  +I
Sbjct: 400 ERGGQWQKALQAFHKMCVQGCKPDAIVYNAII 431



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 2/184 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   RN   N   Y  ++       +  L  D+Y+ M      P    +++L+    K 
Sbjct: 168 QEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYGKL 227

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +      D MK  G  P +  YN LI  C  C    +A+ +++ +      PN  TY
Sbjct: 228 GQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTY 287

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++A     QL     + ++M           Y+ LI+A         +TA +I   +
Sbjct: 288 NALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKA--GQWETALRIFNEM 345

Query: 210 EQSK 213
           +Q K
Sbjct: 346 QQDK 349



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 60/131 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+N   +   Y++++++     ++     ++++M  D   P    ++SL+    +G
Sbjct: 308 QEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQG 367

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +      +QM A+G  PDV  Y  LIS   +     +A++ F +M     KP+   Y
Sbjct: 368 GQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVY 427

Query: 150 VCLLNACAAAG 160
             +++     G
Sbjct: 428 NAIIDTLWETG 438



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 14/276 (5%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +L+   +K  +L       + M+A   +P+V  YN L+ V GK    ++AI + + MK
Sbjct: 182 YTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMK 241

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIP 196
              V+P  +TY  L+ AC    Q     A+ + + + G   +   Y  LI+A+  T ++ 
Sbjct: 242 HEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLG 301

Query: 197 RADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
           +A +      E++ Q+   S +  S   +  E  G  +  L      +    +   +   
Sbjct: 302 KALEVYQ---EMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQ----QDKCVPNT 354

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           +T Y+    ACA+    +    + E +     +PDV      I  Y   G      + F 
Sbjct: 355 VT-YNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFH 413

Query: 317 DYICSEKFPPAELYA----TLVEGAMFGYTPKGMQL 348
                   P A +Y     TL E  +     K +QL
Sbjct: 414 KMCVQGCKPDAIVYNAIIDTLWETGIIWAQGKALQL 449



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%)

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           L DV  Y   IS+C   ++ D+A+ + +EM+   ++ N  TY  L+N C   G+L     
Sbjct: 141 LCDVYSYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALD 200

Query: 168 IVRDMTAAGAGLDKFCYAGLI 188
           I   M A     +   Y  L+
Sbjct: 201 IYNSMRAVNCMPNVVTYNTLV 221


>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C     S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXG 340


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 196 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 255

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM   E+KP+  TY  L++ C   G 
Sbjct: 256 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGD 313

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD+  Y  LI+ 
Sbjct: 314 LDSAFEHRKRMIQENIRLDEVAYTALISG 342



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 136/320 (42%), Gaps = 32/320 (10%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 112 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 171

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 172 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGV 229

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRA----DDT 201
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A    D+ 
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289

Query: 202 ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261
           + K  EL      ++++          + G  KE   +L +A + HR+   +   + +  
Sbjct: 290 SMK--ELKPDKITYTTL----------IDGCCKEG--DLDSA-FEHRK-RMIQENIRLDE 333

Query: 262 VAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           VA+ A     C E + V A + L EML    K PD       I  +   GD+  G K+ +
Sbjct: 334 VAYTALISGLCQEGRSVDAEKMLREMLNVGLK-PDSRTYTMIINEFCKKGDVWKGSKLLK 392

Query: 317 DYICSEKFPPAELYATLVEG 336
           +       P    Y  L+ G
Sbjct: 393 EMQRDGHVPSVVTYNVLMNG 412


>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 481

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + RF + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRFMMAKRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETANXFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN LI+   + K  ++A R F EMK   ++P   TY  L+    +  ++D
Sbjct: 178 SRDITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
              +++ +M   G   +   Y+ L+    N
Sbjct: 238 DALSLMEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 3/181 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R+   +   YNT++      ++       + +M    ++PT   + +LI G +  
Sbjct: 174 EDMKSRDITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSV 233

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQT 148
            R+ D     ++MK  G  P+   Y+ L+      +   +A  I +EM  KY    +   
Sbjct: 234 DRVDDALSLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSI 293

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKII 206
           ++ L++    AG LD    +++ M       +   Y  LI  +    K  +A +   K+I
Sbjct: 294 FLKLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAEKYDKAVNLLDKLI 353

Query: 207 E 207
           E
Sbjct: 354 E 354


>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFXVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K ++    + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC AG
Sbjct: 285 YLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAG 340


>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDP----VYAIVRDMTAAGAG-----LDKFCYAG 186
           Y    +   ++ L+++   +G LD     + A+VR      AG     ++ FC AG
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMVRLSVPTEAGHYGVLIENFCKAG 340


>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXG 340


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 127/300 (42%), Gaps = 7/300 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++   +Q++     ++  +M   G+Q     + +L+   +KG+ L       
Sbjct: 194 NTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVY 253

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM A G  P++  YN LI V GK    ++AIR+ + +++  + P  +TY  ++ AC  +
Sbjct: 254 RQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMS 313

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           GQ      I   M AAGA      Y  LI+A+  K  + D       ++V +    + + 
Sbjct: 314 GQAQEALRIYERMLAAGAQPTATTYTALISAY-GKNGQLDRALQIFQDMVRRGCERNVIT 372

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
            S   +  E  G  + EL  L     +H  G   +  +  Y+    ACA+    +  + +
Sbjct: 373 YSSLISACEKAG--RWEL-ALELFREMHTEGCRPN--VVTYNSLIAACAQGAQWEKAQEM 427

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
            E ++     PD       I  Y  +G        FE        P + +Y T+V GA++
Sbjct: 428 FEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIV-GALW 486



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   Y+ ++          L  DVY  M+ +G  P    +++LI    K  
Sbjct: 220 EMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTG 279

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             ++     D ++  G  P++  YN +I  C     + +A+RI+E M     +P   TY 
Sbjct: 280 AWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYT 339

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L++A    GQLD    I +DM   G   +   Y+ LI+A
Sbjct: 340 ALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISA 379



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 63/126 (50%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  RR    N   Y++++++     R+ L  +++ +M  +G +P    ++SLI    +G
Sbjct: 359 QDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQG 418

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           ++ +      +QM+  G  PD   +  LI+   +  +  +A+  FE+MK +  +P+   Y
Sbjct: 419 AQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVY 478

Query: 150 VCLLNA 155
             ++ A
Sbjct: 479 NTIVGA 484



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           L +   Y  +IS CG  +   +A+ +  EM+   ++ N  TY  L+N C    +LD    
Sbjct: 192 LCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALD 251

Query: 168 IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           + R M A G   +   Y  LI  +      A + A ++++ +E+
Sbjct: 252 VYRQMLAEGCTPNLVTYNTLIDVYGKT--GAWEEAIRVLDALER 293


>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DXLRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC AG
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKAG 340


>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXG 340


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 4/150 (2%)

Query: 44  YNTVVTS--LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           YNT++ +  + +Q R  L   VY  ++ DG  P    +++LI    K  +L        +
Sbjct: 176 YNTLIIACNMCNQPREAL--AVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQE 233

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M        V  Y+ LIS C K    + A+RIF EM++    PN  TY  L+ ACA  GQ
Sbjct: 234 MLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQ 293

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +    +   MTA G   D   Y  LI+A+
Sbjct: 294 WEKATEVFEQMTAHGCTPDVVTYTALISAY 323



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 67/152 (44%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N++ YN ++++     +     +VY +M+   ++ +   + SLI    K  + +   
Sbjct: 204 YTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETAL 263

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              ++M+ +  +P+   YN L++ C +    ++A  +FE+M  +   P+  TY  L++A 
Sbjct: 264 RIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAY 323

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              GQ          M   G   D   Y  +I
Sbjct: 324 ERGGQWQKALQAFGKMCMQGCKPDAIVYNAII 355



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 64/160 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +RN   N   +  ++       +  L  ++Y++M      P    +++L+    K  
Sbjct: 93  EMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYGKLG 152

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +      D MK  G  P +  YN LI  C  C    +A+ +++ +      PN  TY 
Sbjct: 153 RWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYN 212

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L++A     QL     + ++M           Y+ LI+A
Sbjct: 213 ALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISA 252



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ ++M    ++     F +L+   +K  +L       + M+A   +P+V  YN L+ V 
Sbjct: 89  ELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVY 148

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK    ++AI + + MK+  V+P  +TY  L+ AC    Q     A+ + + + G   + 
Sbjct: 149 GKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNS 208

Query: 182 FCYAGLITAH 191
             Y  LI+A+
Sbjct: 209 TTYNALISAY 218



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 60/131 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+N   +   Y++++++     ++     ++++M  D   P    ++SL+    +G
Sbjct: 232 QEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQG 291

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +      +QM A+G  PDV  Y  LIS   +     +A++ F +M     KP+   Y
Sbjct: 292 GQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVY 351

Query: 150 VCLLNACAAAG 160
             +++     G
Sbjct: 352 NAIIDTLWETG 362



 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           L DV  Y   IS+C   ++ D+A+ +  EM++  ++ N  T+  L+N C   G+L     
Sbjct: 65  LCDVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALE 124

Query: 168 IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           I  +M AA    +   Y  L+  +  K+ R  + A  +++L++Q
Sbjct: 125 IYNNMRAANCMPNVVTYNTLVDVY-GKLGRW-ERAIHVLDLMKQ 166


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++++ L   R+    R + D+M+ +GV P    + +L  G  +   ++  F    +MK
Sbjct: 449 YNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMK 508

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 D+  Y  L+  C K     +A+ +F+++    +K N  TY  +L+  A  G+L 
Sbjct: 509 KENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELS 568

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +++DM   G  LD  CY   I A
Sbjct: 569 KARDLLKDMQKHGFHLDTICYTSFIKA 595



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 2/191 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E++   N       YN++V +         +  +   M  +G Q    L+ +++ G  + 
Sbjct: 225 EKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEI 284

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +    F  ++KA G  P  A Y  ++ +  K  N  +A+ I EEM K+ V PN   Y
Sbjct: 285 RDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIY 344

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++  A  G     + +  DM +AG   D   Y  L+ A   K  R  D A  ++E +
Sbjct: 345 AMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFC-KAGRM-DKALGVLENI 402

Query: 210 EQSKGWSSVET 220
           + ++   ++ET
Sbjct: 403 QANRLLPTIET 413



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V +     R      V +++  + + PT + + S++ G +KG  +Q      D++K
Sbjct: 379 YNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIK 438

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  YN L+S   K +  + A  + +EM    V PN ++Y  L    A AG ++
Sbjct: 439 TAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVE 498

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + + + M      +D   Y  L+ A
Sbjct: 499 KAFGMFQRMKKENLAIDIVAYGALLKA 525



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/165 (15%), Positives = 69/165 (41%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A  EE   +    N + + ++++   S          ++    + + P   +++S++   
Sbjct: 187 ACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAY 246

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            +   ++       QM+  GF  ++ +Y  +++   + ++ ++ +  F  +K   + P  
Sbjct: 247 CQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTA 306

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            TY C++     AG +     I+ +M   G   +K  YA ++  +
Sbjct: 307 ATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGY 351



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 52/116 (44%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  ++ M    ++P   ++ SLI    +   ++      ++M + G   + AV+  +IS 
Sbjct: 151 RATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISG 210

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
                N++ A   FE+ K   + P G  Y  ++ A   AG ++ V A++  M   G
Sbjct: 211 YASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG 266



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 51/119 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +V+  +   G++  R  + +++ G  +   L         M+ +GF  D   Y   I  C
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            +  ++++       M++ +++ N +TY  L++   AA   D   +      A+G  LD
Sbjct: 597 FRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLD 655


>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 481

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETXNRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKVG 340


>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 481

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGXLIENFCKXG 340


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 28/285 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +    L + V+D +   G++P+   F++L+ G +K   L + F  +  M 
Sbjct: 139 FNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMH 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  D+A ++F+EM    + PNG T+  L++     G+
Sbjct: 199 ASGVQPDVYTYSVLIN--GLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGK 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI-IELVEQSKGWSSV 218
           LD    I + M + G   D   Y  LI     K  + +A D   ++ ++ ++  K   + 
Sbjct: 257 LDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTT 316

Query: 219 ETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAFHA--CAELKDVQA 275
              G+  E            +L TA EY  R      RL  V + A  +  C E + V A
Sbjct: 317 LIDGSCKEG-----------DLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDA 365

Query: 276 METLLEMLKKDRKSPDV---YIVMQNIRCYLHSGDIDNGHKVFED 317
            + L EML    K PD     IVM     +  +GD+  G K+ ++
Sbjct: 366 EKMLREMLSVGLK-PDTGTYTIVMHE---FCKNGDVKMGSKLLKE 406



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 6/145 (4%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + ++ +   YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+ 
Sbjct: 270 QGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLET 329

Query: 95  TFFFRDQM-KANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVC 151
            F +R +M K N  L DV+ Y  LIS  G CK   S  A ++  EM    +KP+  TY  
Sbjct: 330 AFEYRKRMIKENIRLDDVS-YTALIS--GLCKEGRSVDAEKMLREMLSVGLKPDTGTYTI 386

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAG 176
           +++     G +     ++++M   G
Sbjct: 387 VMHEFCKNGDVKMGSKLLKEMQRDG 411



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 4/158 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   + T++       +  L  ++Y  M+  G  P    +++LI G  K 
Sbjct: 230 DEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKK 289

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             L       D+M   G  PD   Y  LI   G CK  D   A    + M K  ++ +  
Sbjct: 290 GDLXQAKDLXDEMSMKGLKPDKITYTTLID--GSCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           +Y  L++     G+      ++R+M + G   D   Y 
Sbjct: 348 SYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYT 385


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAAGA-GL--DKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T AG  GL  + FC AG
Sbjct: 285 YLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAG 340


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 12/254 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  +  +      R ++++M   G+ P    ++S+I G  K  RL DT +F ++MK
Sbjct: 136 YNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK 195

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN LI+   K     + +  + EMK+  +KPN  +Y  L++A      + 
Sbjct: 196 SMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQ 255

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG- 222
                  DM   G   ++F Y  L+ A+  KI    D      E++E    W+ V  +  
Sbjct: 256 QAIKFYVDMRRVGHVPNEFTYTSLVDANC-KIGNLSDAFRLANEMLEVGVEWNVVTYTAL 314

Query: 223 --NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                + E M  +++    + TA       G +  L + Y+   H   + K++     LL
Sbjct: 315 IDGLCDAERMKEAEKLFGKMVTA-------GVIPNLAS-YNALIHGFVKAKNMDRALELL 366

Query: 281 EMLKKDRKSPDVYI 294
             LK     PD+ +
Sbjct: 367 NELKGRGIQPDLLL 380



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           +RFF       DM+  G +PT   ++ +I    K   ++      ++MK  G +PD   Y
Sbjct: 118 KRFF------KDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTY 171

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N +I   GK    D  +  FEEMK    +P+  TY  L+N    +G+L       R+M  
Sbjct: 172 NSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQ 231

Query: 175 AGAGLDKFCYAGLITA 190
           +G   +   Y+ L+ A
Sbjct: 232 SGLKPNVVSYSTLVDA 247



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 54/124 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ Y  ++  L  + +      +++ M  +G+ P R  + SL+ G +K   + +    R
Sbjct: 483 NAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALR 542

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G   D+  Y  L+    +C    +A    EEM   E+ P+    + +L      
Sbjct: 543 DKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHYEL 602

Query: 160 GQLD 163
           G +D
Sbjct: 603 GCID 606



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 59/127 (46%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M+  GV+     + +LI G     R+++      +M   G +P++A YN LI    K 
Sbjct: 297 NEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKA 356

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           KN D+A+ +  E+K   ++P+   Y   +       +++    ++ +M   G   +   Y
Sbjct: 357 KNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIY 416

Query: 185 AGLITAH 191
             L+ A+
Sbjct: 417 TTLMDAY 423



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++  L    R      ++  M+  GV P    +++LI G +K   +       
Sbjct: 307 NVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELL 366

Query: 100 DQMKANGFLPDVAVY-NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           +++K  G  PD+ +Y  ++  +CG  +  + A  +  EM++  +K N   Y  L++A   
Sbjct: 367 NELKGRGIQPDLLLYGTFIWGLCG-LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFK 425

Query: 159 AG 160
           +G
Sbjct: 426 SG 427



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FF+D + A G  P V  YN +I    K  + + A  +FEEMK   + P+  TY  +++  
Sbjct: 120 FFKDMIGA-GSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
              G+LD       +M +     D   Y  LI     + K+P+ 
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKG 222



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 57/149 (38%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T+V +   +         Y DM   G  P    + SL+    K   L D F   
Sbjct: 237 NVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLA 296

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G   +V  Y  LI      +   +A ++F +M    V PN  +Y  L++    A
Sbjct: 297 NEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKA 356

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +D    ++ ++   G   D   Y   I
Sbjct: 357 KNMDRALELLNELKGRGIQPDLLLYGTFI 385



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/116 (18%), Positives = 52/116 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + YN ++      +      ++ +++   G+QP   L+ + I G     +++      
Sbjct: 342 NLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVM 401

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           ++M+ NG   +  +Y  L+    K  N  + + + EEM++ + +    T+  L++ 
Sbjct: 402 NEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDG 457


>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 484

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++PN  TY  L+    +  Q+D
Sbjct: 178 SREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPGLCN 267



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++P    + 
Sbjct: 171 RFF------EDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+    + E + K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 484

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAAGA-GL--DKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T AG  GL  + FC AG
Sbjct: 285 YLAPTDNSIFLRLISSHCKSGNLDAAVDVLKAMIRLSVPTEAGHYGLLIENFCKAG 340


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    N   YNT++  L   R+      + + M  +G++P+   F+ L+ G  K 
Sbjct: 132 EEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKA 191

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +   F +QM+  G+ P    YN LI+   + ++  +A R F +MK+  + P   TY
Sbjct: 192 GKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTY 251

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L++A A    +D  + +   M  AG  +D   Y  L+ A
Sbjct: 252 TILIDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHA 292



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 55/126 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M + G++P    ++ L+    +    +      ++M A G   +V  YN LI+   
Sbjct: 95  LFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLC 154

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           + +    A ++ E M++  ++P+  T+  L++    AG++         M  AG      
Sbjct: 155 RYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAV 214

Query: 183 CYAGLI 188
            Y  LI
Sbjct: 215 TYNALI 220


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDP----VYAIVRDMTAAGAG-----LDKFCYAG 186
           Y    +   ++ L+++   +G LD     + A++R      AG     ++ FC AG
Sbjct: 285 YLAPTDNSIFLRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIENFCKAG 340


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 6/185 (3%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           +YR  K+  G L  +FF    GA        A +   YN ++  +  +      + ++  
Sbjct: 224 LYRLAKTGKGDLSNKFFRDMVGA------GIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQ 277

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G+ P    ++SLI G  K   L ++F   ++MK  G  PDV  YN LI+   K + 
Sbjct: 278 MKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQ 337

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A     EMK   +KPN  TY  L++A      L      + DM   G   ++F Y  
Sbjct: 338 MPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTS 397

Query: 187 LITAH 191
           LI A+
Sbjct: 398 LIDAN 402



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 13/183 (7%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+E  +     N   Y T++  L  + R     D++  M+  GV P    + +L+ G +K
Sbjct: 415 ADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIK 474

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNG 146
             R+++      ++K     PD+ +Y  +I   G C  +  ++   +  EMK   ++ N 
Sbjct: 475 NKRVENALELLKEIKEKKIKPDLLLYGTIIW--GLCSQNKLEECEFVMSEMKACGIRANS 532

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAGLITAHTNKIPR 197
             Y   ++A    G+      ++++M   G           +D  C  GL+    +   R
Sbjct: 533 VIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFAR 592

Query: 198 ADD 200
             D
Sbjct: 593 MAD 595


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAAGA-GL--DKFCYAG 186
           Y    +    + L+++   +G LD    +++ M      T AG  GL  + FC AG
Sbjct: 285 YLAPTDNSIIMRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAG 340


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 71/152 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN VV  L    +    + + + M+  G  P    F++LIV    G+RL++      Q+ 
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVT 387

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  +N LI+   K  +   A+R+FEEMK     P+  TY  L++   + G+L 
Sbjct: 388 LKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLG 447

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
               ++++M +AG       Y  +I     K+
Sbjct: 448 KALDLLKEMESAGCPRSTVTYNTIIDGLCKKM 479



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 20/223 (8%)

Query: 1   MRLLQSIYRHHKSVG------------GALGRRFFVTSA--GAEEYARRNYANNASEYNT 46
           M+LL+++Y      G             AL R   V +A    EE +    A + + + T
Sbjct: 166 MKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTT 225

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++     +        V   M+  G  PT+   + LI G  K  R++D   +  Q  ANG
Sbjct: 226 LMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANG 285

Query: 107 FLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F PD   YN  ++  G C+N     A+++ + M +    P+  TY  ++N     GQL+ 
Sbjct: 286 FEPDQITYNTFVN--GLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 343

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKI 205
              I+  M   G   D   +  LI A    N++  A D A ++
Sbjct: 344 AKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQV 386



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + R     +V+D M L G+      F++LI G  K  R+ D      QM 
Sbjct: 468 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMI 527

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + G  P+   YN +++    CK  D  +A  I + M     + +  TY  L+N    AG+
Sbjct: 528 SEGLQPNNITYNSILT--HYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585

Query: 162 LDPVYAIVRDMTAAG 176
                 ++R M   G
Sbjct: 586 TQVALKLLRGMRIKG 600



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 68/159 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        +   YNT++ +L S  +     D+  +M   G   +   ++++I G  K 
Sbjct: 419 EEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKK 478

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     DQM   G   +   +N LI    K K  D A ++  +M    ++PN  TY
Sbjct: 479 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITY 538

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +L      G +     I++ MTA G  +D   Y  LI
Sbjct: 539 NSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLI 577



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           + NA  +NT++  L   +R      +   M+ +G+QP    ++S++    K   ++    
Sbjct: 497 SRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 556

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M ANGF  DV  Y  LI+   K   +  A+++   M+   ++   + Y  ++ +  
Sbjct: 557 ILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLF 616

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
                     + R+MT  G   D F Y
Sbjct: 617 RRNNTRDAMNLFREMTEVGEPPDAFTY 643



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 75/397 (18%), Positives = 156/397 (39%), Gaps = 42/397 (10%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFF-LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           AR ++A     Y  ++  L +      L++ +  +M  +G Q    + HS +    +   
Sbjct: 69  AREDFAPGPEVYEEIIRKLGAAAGAADLMKVLVTEMRREGHQVRVGVVHSFLESYARQQL 128

Query: 92  LQDTF-FFRDQMKA-NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             D      +Q+    G   D  VYN+L++V  +         ++ EM +  +KP+  T+
Sbjct: 129 FVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTF 188

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L+ A   A Q+     ++ +M+++G   D+  +  L+     +  I  A     +++E
Sbjct: 189 NTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLE 248

Query: 208 LVEQSKGWSSVETSGNNAEN---------EMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
           +     G S  + + N   N         + +G  ++E+ N           GF    +T
Sbjct: 249 M-----GCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIAN-----------GFEPDQIT 292

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
            Y+   +   +   V     +++++ ++   PDV+     + C   +G ++    +    
Sbjct: 293 -YNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351

Query: 319 ICSEKFPPAELYATLVEGAMFG-YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAG 377
           +     P    + TL+     G    + + LA+   +        LSP + +  +L+ A 
Sbjct: 352 VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLK------GLSPDVYTFNILINAL 405

Query: 378 EKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            K G    A  +++ M++   TP     E  YN L D
Sbjct: 406 CKVGDPQLALRLFEEMKSSGCTPD----EVTYNTLID 438



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 72/181 (39%), Gaps = 1/181 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           +   R    + + +NT++ +L S  R     D+   + L G+ P    F+ LI    K  
Sbjct: 350 QMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVG 409

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             Q      ++MK++G  PD   YN LI          +A+ + +EM+      +  TY 
Sbjct: 410 DPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYN 469

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            +++      +++    +   M   G   +   +  LI     K  R DD    I +++ 
Sbjct: 470 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC-KDKRIDDANQLISQMIS 528

Query: 211 Q 211
           +
Sbjct: 529 E 529



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 1/138 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++T    Q       D+   M  +G +     + +LI G  K  R Q      
Sbjct: 534 NNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLL 593

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAA 158
             M+  G       YN +I    +  N+  A+ +F EM +    P+  TY +     C  
Sbjct: 594 RGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRG 653

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +   +  + +M   G
Sbjct: 654 GGSIREAFDFLLEMVDKG 671


>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 484

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K ++    + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC AG
Sbjct: 285 YLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAG 340


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++     +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATK- 204
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   + 
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
           I++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 IMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M++ G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 4/147 (2%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKA 104
           V+  L   + F L+   Y++ +  G   +   F+ L+ G +K    RL  + F  D +  
Sbjct: 107 VLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVF--DAITK 164

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P V  +N L++   K  + ++  R+   M+   V+P+  TY  L+N      ++D 
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAH 191
              +  +M   G   +   +  LI  H
Sbjct: 225 ANVLFDEMLDKGLVPNGVTFTTLIDGH 251


>gi|226493938|ref|NP_001152190.1| ATP binding protein [Zea mays]
 gi|195653677|gb|ACG46306.1| ATP binding protein [Zea mays]
 gi|413926813|gb|AFW66745.1| ATP binding protein [Zea mays]
          Length = 376

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+  M  DGV P    +++LI G  +   +     F D M A G LPDV  Y  L++  G
Sbjct: 205 VFRQMRSDGVDPDLVTYNTLIFGLARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMN--G 262

Query: 123 KCKNSDQ--AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C   D   A+++ EEM+    +PN +TY  LL       +LD    + + M AAG  L+
Sbjct: 263 MCVKGDALGALKLLEEMQGKGCQPNERTYSTLLMGLCKNKKLDKAVEVYKSMAAAGTKLE 322

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEM 229
              YA  + A       AD  A ++ +   Q+K ++ V T+ +  EN +
Sbjct: 323 SPAYASFVRALCRSGSVAD--AYEVFDYAIQTKSFAEV-TAYSELENSL 368


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 41/304 (13%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            +E  R+ Y +    YNT+++ L   +R     D+Y ++M +G  PT   +  L+ G +K 
Sbjct: 825  KEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKS 884

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++ D     ++M   G  P+  +YN L++      N++   ++FE+M +  + P+ ++Y
Sbjct: 885  GKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSY 944

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              L++    AG+L+      R +   G   D   Y  LI     K  R ++  +      
Sbjct: 945  TILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDG-LGKSERIEEAVSLF---- 999

Query: 210  EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
                             NEM                  ++ G +  L T   +  H    
Sbjct: 1000 -----------------NEM------------------KKKGIIPNLYTYNSLILHLGKA 1024

Query: 270  LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
             K  +A +   E+L+K  K P V+     IR Y  SG  DN +  +   I     P +  
Sbjct: 1025 GKAAEAAQMYEELLRKGWK-PSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSST 1083

Query: 330  YATL 333
            Y  L
Sbjct: 1084 YMQL 1087



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN ++  L          +VY  M+ DG+ P+   +  L+V   K   +    +  
Sbjct: 170 NAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLL 229

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M+A G  P+V  Y   I V G+    D+A  I  +M+    KP+  T+  ++     A
Sbjct: 230 NEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDA 289

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L    A+   M A+    D+  Y  L+
Sbjct: 290 GRLSDAKAVFWKMKASDQKPDRVTYITLL 318



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    +    + +  N V+ SL    R  + + V+ ++   GV P    +  +I    K 
Sbjct: 440 EHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKA 499

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           S+  +   F   M  +G +PDV   N LI    K    ++A ++F ++K+ +++P   TY
Sbjct: 500 SKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTY 559

Query: 150 VCLLNACAAAGQLDPVYAIVRDMT 173
             LL+     G++  V  ++ +MT
Sbjct: 560 NTLLSGLGREGKVKEVMQLLEEMT 583



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 1/174 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y  VV +L    R      V+D+M   G+ P +  ++SLI G +K        
Sbjct: 342 YNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRAL 401

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + M A G  P+   +   I+  GK   S +AI+ +E MK   + P+      +L + 
Sbjct: 402 ELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSL 461

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           A +G+L     +  ++ A G   D   Y  +I    +K  +AD+      ++VE
Sbjct: 462 AGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKC-CSKASKADEAMNFFSDMVE 514



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 2/161 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM-KG 89
           E   R    N   Y   +  L    RF     +   M   G +P   + H++I+  +   
Sbjct: 231 EMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDV-VTHTVIIQVLCDA 289

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D      +MKA+   PD   Y  L+  CG   +S   + ++  M       N  +Y
Sbjct: 290 GRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSY 349

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +++A    G++D   A+  +M   G   +++ Y  LI+ 
Sbjct: 350 TAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISG 390



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +V++ M+ DG       + +++    +  R+ +     D+MK  G  P+   YN LIS  
Sbjct: 332 EVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGF 391

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            K    D+A+ +F  M      PNG T+V  +N    +GQ
Sbjct: 392 LKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQ 431



 Score = 44.7 bits (104), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 54/123 (43%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + + DM+  G  P     +SLI    KG +  + +    ++K     P    YN L+S  
Sbjct: 507 NFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGL 566

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+     + +++ EEM +    PN  TY  +L+  +  G+++    ++  MT  G   D 
Sbjct: 567 GREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDL 626

Query: 182 FCY 184
             Y
Sbjct: 627 SSY 629



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 4/154 (2%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRD----VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           A +Y T+ T L S  +  L+++    V + ++  G    +  FHSL+ G +K + ++ + 
Sbjct: 657 APDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSI 716

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            F + + + G L +      LI    K K + +A ++F + K   V     +Y  L+   
Sbjct: 717 EFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGL 776

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                +D    +  +M   G G D+F Y  ++ A
Sbjct: 777 VDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA 810


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P   +F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  Q   + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD+  Y  LI+ 
Sbjct: 333 LDTAFEHRKQMIQENIRLDEVAYTALISG 361



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GVQP    +  LI G  K S++ D     D+M   G +P+  ++  LI   G CKN
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLID--GHCKN 260

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L  V+ ++ +M+  G   DK  Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITY 320

Query: 185 AGLI 188
             LI
Sbjct: 321 TTLI 324



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 24/285 (8%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V+D +   G++P+   +++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+ 
Sbjct: 162 QSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN- 220

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK S  D A  +F+EM    + PNG  +  L++     G++D    I + M +    
Sbjct: 221 -GLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSKEE 236
            D   Y  LI     K         ++  L+++   KG    + +     +   G  KE 
Sbjct: 280 PDLITYNTLIYGLCKK-----GDLKQVHHLIDEMSMKGLKPDKITYTTLID---GCCKEG 331

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPD 291
             +L TA + HR+   +   + +  VA+ A     C E + V A + L EML    K PD
Sbjct: 332 --DLDTA-FEHRK-QMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK-PD 386

Query: 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                  I  +   GD+  G K+ ++       P    Y  L+ G
Sbjct: 387 ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +     +  + D+M + G++P +  + +LI G  K   L   F  R QM 
Sbjct: 285 YNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMI 344

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM    +KP+ +TY  ++N     G +
Sbjct: 345 QENIRLDEVAYTALISGLCQEGRSVD-AEKMLREMLNVGLKPDARTYTMIINEFCKKGDV 403

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 404 WKGSKLLKEMQRDG 417



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 64/165 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   + P    +++LI G  K 
Sbjct: 236 DEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 295

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+      D+M   G  PD   Y  LI  C K  + D A    ++M +  ++ +   Y
Sbjct: 296 GDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAY 355

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M   G   D   Y  +I     K
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKK 400


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + RF + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPGLCN 267



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++    G LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 162/410 (39%), Gaps = 28/410 (6%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           G      F   SA  EE   +N   +   +  ++  L    +    RD+ D M   GV P
Sbjct: 576 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 635

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
               +++L+ G  K  R+++   F ++M ++G +PD   Y  L+    +   +D A+++ 
Sbjct: 636 NVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV 695

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            E+K +   P+  TY  L++    +GQ +    ++ +M   G   D   Y  LI    + 
Sbjct: 696 SELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLI----DS 751

Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM------GVSK----EELYNLPTAE 244
           + +A D     +E   +  G  S   S     N +       G+ K    +E   L   E
Sbjct: 752 LCKAGD-----LEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEAREL-IQE 805

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD--RKSPDVYIVMQNIRCY 302
            + +    L  ++T        C +    +A E L+  L+    R SPD       I   
Sbjct: 806 MMRKSCDVLPNIITYNSFLDGLCKQSMMAEACE-LMRSLRDGSLRVSPDTVTFSTLIDGL 864

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF 362
              G  D    VF+D I     P    Y  L+ G     T K M+ A   + +M  + + 
Sbjct: 865 CKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNG--LCKTDK-MERAHAMIESMVDKGV- 920

Query: 363 LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
            +P + +  +LV A  K+     A  +   M +R  TP++    +  +GL
Sbjct: 921 -TPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 42  SEYNTVVTSLT----SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           ++YN V+ SL     + R   + R    +M  DGV PT   ++++I G  K + L     
Sbjct: 181 ADYNIVLQSLCRAGETARALEIFRG---EMARDGVAPTIVTYNTIINGLCKSNELGAGME 237

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             +++   G  PDV  YN LI    K  + ++A R+  +M      PN  TY  L+N   
Sbjct: 238 LFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLC 297

Query: 158 AAGQLDPVYAIVRDMT 173
             G++D    ++++MT
Sbjct: 298 KVGRIDEARELIQEMT 313



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 3/172 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N  +  L+          VY+ M+   + P +  F+ LI G  K    +      ++M 
Sbjct: 535 FNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMV 594

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A    PDV  +  LI    K    + A  I + M    V PN  TY  L++    +G+++
Sbjct: 595 AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 654

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
                + +M ++G   D   Y  L+ A   +  R DD    + EL  +S GW
Sbjct: 655 EACQFLEEMVSSGCVPDSITYGSLVYALC-RASRTDDALQLVSEL--KSFGW 703



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 62   DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
            +V+DDM+  G  P    ++ L+ G  K  +++      + M   G  PDV  Y+ L+   
Sbjct: 875  NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAF 934

Query: 122  GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLD 180
             K  + D+A+ +   M      PN  T+  +++    + Q    + +  DMT   G   D
Sbjct: 935  CKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPD 994

Query: 181  KFCYAGLI 188
            K  Y  LI
Sbjct: 995  KITYCTLI 1002



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 151/406 (37%), Gaps = 36/406 (8%)

Query: 24  VTSAGAEEYARRNYAN--------NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG--VQ 73
           +  AG  E ARR + +        N   Y+ ++  L    R    R++  +M      V 
Sbjct: 261 LCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVL 320

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL---PDVAVYNYLISVCGKCKNSDQA 130
           P    ++S + G  K S   +       ++ +G L   PD   ++ LI    KC   D+A
Sbjct: 321 PNIITYNSFLDGLCKQSMTAEACELMRSLR-DGSLRVSPDTVTFSTLIDGLCKCGQIDEA 379

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +F++M      PN  TY  L+N    A +++  +A++  M   G   D   Y+ L+ A
Sbjct: 380 CSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDA 439

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGN----NAENEMMGVSKEELYNLPTAEYV 246
                      A+++ E +E   G +S   + N    N+  + +  S          + +
Sbjct: 440 FCK--------ASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDM 491

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
             + G +   +T Y                E LL+ +      PD Y     I      G
Sbjct: 492 ALKHGLVPDKIT-YCTLIDGLFRTGRAGQAEALLDAM----PDPDTYAFNCCINGLSKLG 546

Query: 307 DIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPR 366
           D+    +V+   +  E  P    +  L+ GA         + A      M ++N  L P 
Sbjct: 547 DVSRALQVYNRMLELELVPDKVTFNILIAGAC---KAGNFEQASALFEEMVAKN--LQPD 601

Query: 367 MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           + +   L+    K+G    A  I DLM    + P++    A  +GL
Sbjct: 602 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 647



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 155/422 (36%), Gaps = 55/422 (13%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E AR   A     YNT++  L          +++++++  G  P    +++LI    K  
Sbjct: 206 EMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAG 265

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQT 148
            L++       M +   +P+V  Y+ LI+   K    D+A  + +EM  K  +V PN  T
Sbjct: 266 DLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 325

Query: 149 Y------VCLLNACAAAGQL-----DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
           Y      +C  +  A A +L     D    +  D       +D  C  G I         
Sbjct: 326 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQI--------- 376

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL 257
            D+  +   +++  + G+     + N   N +    K E  +      V +  G    ++
Sbjct: 377 -DEACSVFDDMI--AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK--GVTPDVI 431

Query: 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           T Y V   A  +   V     LL  +     +P+V      I     S       ++F+D
Sbjct: 432 T-YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDD 490

Query: 318 YICSEKFPPAEL-YATLVEG-----------AMFGYTPKGMQLAQDTLVNMNSR------ 359
                   P ++ Y TL++G           A+    P     A +  +N  S+      
Sbjct: 491 MALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSR 550

Query: 360 ---------NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYN 410
                     + L P   +  +L+A   K+G +  A+ +++ M A+ + P +    A  +
Sbjct: 551 ALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID 610

Query: 411 GL 412
           GL
Sbjct: 611 GL 612



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 126/320 (39%), Gaps = 50/320 (15%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLN 154
            FR +M  +G  P +  YN +I+  G CK+++    + +FEE+ +    P+  TY  L++
Sbjct: 202 IFRGEMARDGVAPTIVTYNTIIN--GLCKSNELGAGMELFEELVERGHHPDVVTYNTLID 259

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +   AG L+    +  DM++     +   Y+ LI     K+ R D+      EL++    
Sbjct: 260 SLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLC-KVGRIDEAR----ELIQ---- 310

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
                        EM   S + L N+ T         FL  L          C +    +
Sbjct: 311 -------------EMTRKSCDVLPNIIT------YNSFLDGL----------CKQSMTAE 341

Query: 275 AMETLLEMLKKD--RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           A E L+  L+    R SPD       I      G ID    VF+D I     P    Y  
Sbjct: 342 ACE-LMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNA 400

Query: 333 LVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
           LV G         M+ A   + +M  + +  +P + +  +LV A  K+     A  +   
Sbjct: 401 LVNGLC---KADKMERAHAMIESMVDKGV--TPDVITYSVLVDAFCKASRVDEALELLHG 455

Query: 393 MQARKITPSLPAVEAYYNGL 412
           M +R  TP++    +  +GL
Sbjct: 456 MASRGCTPNVVTFNSIIDGL 475



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 29/166 (17%)

Query: 33   ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKG-- 89
            A R    N   +N+++  L    +      ++DDM L  G+ P +  + +LI G  +   
Sbjct: 951  ASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGW 1010

Query: 90   --------------------------SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
                                      S+L D      +M     +PD   +N LI+   K
Sbjct: 1011 AGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACK 1070

Query: 124  CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
              N +QA  +FEEM    ++P+  T+  L++    AGQ++  + I+
Sbjct: 1071 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|357145938|ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1084

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 483 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYGALIDGCAKAGQ 542

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSV 218
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKGW  +
Sbjct: 543 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEPSESKGWKPI 601



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  H +   GAL     +  AG +         +   Y T++++     +   + +
Sbjct: 462 MLLSVCAHSQDFDGALQVMMLLKEAGLKP--------DCKLYTTLISTCAKCGKVDAMFE 513

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 514 VFHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 573

Query: 123 KCKNSDQAIRIFEEM-------KKYE-VKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM       K ++ + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 574 ESGAVARAFDVLSEMTAEPSESKGWKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 633

Query: 172 MTAAG 176
               G
Sbjct: 634 YNIKG 638



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSR--LQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           D+ ++M   G+   + + H+  +   K  R  ++   F R  + AN   P ++ +N L+S
Sbjct: 411 DLLENMEQKGLLDMKKIHHASFLIACKKQRAVMEAVRFCR--LIAN---PKMSTFNMLLS 465

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           VC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +  +M +AG   
Sbjct: 466 VCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEP 525

Query: 180 DKFCYAGLI 188
           +   Y  LI
Sbjct: 526 NVNTYGALI 534



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 19/198 (9%)

Query: 5   QSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVT-----------SLTS 53
           + I   H +VG  +        AG  + AR  Y     EYN   T           SLT 
Sbjct: 599 KPILPDHVTVGALMKT---CIQAGQADRAREVY-KMLQEYNIKGTPEVYTIALRSCSLTG 654

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFLPDVA 112
              F L   +Y+DM   GV P  ++F S +V     +R  D  F     ++A GF   + 
Sbjct: 655 DLGFAL--KIYEDMNKIGVIPD-EMFLSALVDVAGHARRADAAFEIIKDVRAKGFHVGIM 711

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+  +  C   K+  +A+++FEE+K   + P       L+ +     Q+     ++ ++
Sbjct: 712 AYSSFMGACCNAKDWKKALQLFEEIKISRLTPTVPMMNALITSLCDGDQVQKSIEVLNEL 771

Query: 173 TAAGAGLDKFCYAGLITA 190
              G   ++  Y+ L  A
Sbjct: 772 KEFGVRPNEITYSVLCVA 789


>gi|297808589|ref|XP_002872178.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318015|gb|EFH48437.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/392 (18%), Positives = 163/392 (41%), Gaps = 15/392 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ ++T Q+++  L  +  ++   G +P    F+++I    +   ++D      +MK
Sbjct: 77  YTTLLAAMTVQKQYGSLSSIVSEVEQSGTKPDSIFFNAVINAFSESGNMEDAVQALLKMK 136

Query: 104 ANGFLPDVAVYNYLIS---VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G  P  + YN LI    + GK + S   + +  E    +V+PN +T+  L+ A     
Sbjct: 137 ELGLNPTTSTYNTLIKGYGIAGKPERSSALLDLMLEESNVDVRPNIRTFNVLVQAWCKKK 196

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           +++  + +V  M   G   D   Y  + T +  K     +T     E+VE+       + 
Sbjct: 197 KVEEAWEVVHKMEECGVRPDTVTYNTIATCYVQK----GETVRAESEVVEKMVMKEKAKP 252

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAMETL 279
           +G      + G  +E         +V R     +   L V++   +   E+ D   ++ +
Sbjct: 253 NGRTCGIVVGGYCREGRVR-DGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEV 311

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
           L ++K+     DV      +  +  +G ++   +VF++ + +   P A  Y+ L +G + 
Sbjct: 312 LTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVR 371

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
              PK  +   +TL+  +  N+ +         +++    SG    A  +++ M    ++
Sbjct: 372 AKEPKKAEELLETLIVESRPNVVIFT------TVISGWCSSGSMDDAMRVFNKMCKFGVS 425

Query: 400 PSLPAVEAYYNGLKDREVPADDPRLVVVSRAY 431
           P++   E    G  + + P     ++ + R +
Sbjct: 426 PNIKTFETLMWGYLEVKQPWKAEEVLQMMRGF 457


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 10/299 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++ S+   +      D++ +M+  G+ P    + +LI G     +L D     
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLF 283

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M      PDV  +N L++   K     +   +F+ M K  +KPN  TY  L++     
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +++   +I   M   G   D   Y+ +I     KI + D+ A  + + + +      V 
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFC-KIKKFDE-AMNLFKEMHRKNIIPDVV 401

Query: 220 TSGNNAENEMMGVSKEEL--YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
           T  +  +    G+SK     Y L   + +H RG  +   +  Y+    A  ++  V    
Sbjct: 402 TYSSLID----GLSKSGRISYALQLVDQMHDRG--VPPTIRTYNSILDALCKIHQVDKAI 455

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            LL  LK     P++Y     I+    SG +++  KVFE  +        + Y  +++G
Sbjct: 456 ALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQG 514



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 2/177 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+N   +   Y++++  L+   R      + D M   GV PT   ++S++    K 
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKI 448

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++        ++K  G  P++  Y+ LI    +    + A ++FE +       N  TY
Sbjct: 449 HQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTY 508

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
             ++      G  +   A++  M   G   D   Y  +I +   K    +D A K++
Sbjct: 509 TIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKK--DENDMAEKLL 563



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 35/163 (21%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF--------------- 107
           V+  ++  G  P    F +LI G     ++Q  F F D++ A GF               
Sbjct: 142 VFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC 201

Query: 108 --------------------LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                                P+V +YN +I    K K  ++A  +F EM    + P+  
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVV 261

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           TY  L++     G+L+    +   M       D + +  L+ A
Sbjct: 262 TYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNA 304


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 20/295 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GNLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L TA EY  R      RL  V + A 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GSCKEG--HLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 4/147 (2%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKA 104
           V+  L   + F L+   Y++ +  G   +   F+ L+   +K    RL  + F  D +  
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVF--DAITK 164

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P V  +N L++   K  N D+  R+   M+   V+P+  TY  L+N      ++D 
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAH 191
              +  +M   G   +   +  LI  H
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGH 251


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 131/306 (42%), Gaps = 19/306 (6%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  Y+ +   +N ++ +L   ++      V++DM     +P    +  +I  T K  +  
Sbjct: 216 RCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTD 275

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           ++      M   GF  ++  YN +I    K + +D+A+ +F +M +   +PN  TY  LL
Sbjct: 276 ESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLL 335

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           N   A GQL+ +  IV     +   ++K  YA  +            T +K+    E  +
Sbjct: 336 NVLVAEGQLNKLDNIVE---MSKKYMNKQIYAYFVR-----------TLSKLGHSSEAHR 381

Query: 214 GWSSVETSGNNAENEM-MGVSKEELYNLPTAEYVHRRGGFLSRLLT----VYHVAFHACA 268
            + ++    +  + +  M + +    +   AE +     F  + +T    +Y+  F A  
Sbjct: 382 LFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALG 441

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
            LK V  +  L E +K+D   PD++     I  Y  +G +D+  K+FE+   S   P   
Sbjct: 442 RLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVI 501

Query: 329 LYATLV 334
            Y +L+
Sbjct: 502 SYNSLI 507



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK +G  PD+  YN LIS  G+    D A++IFEE++    +P+  +Y  L+N     
Sbjct: 454 EKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKN 513

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII------ELVEQ 211
           G +D  +   ++M   G   D   Y+ LI     T+K+  A     ++I       LV  
Sbjct: 514 GDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTY 573

Query: 212 SKGWSSVETSGNNAE 226
           +     +E SG  AE
Sbjct: 574 NILLDCLERSGRTAE 588



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV T+L   ++   + D+Y+ M  DG  P    ++ LI    +  R+       ++++
Sbjct: 433 YNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELE 492

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   PDV  YN LI+  GK  + D+A   F+EM++  + P+  TY  L+       +++
Sbjct: 493 NSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVE 552

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT 189
              ++  +M A G      C   L+T
Sbjct: 553 MACSLFDEMIAEG------CSPNLVT 572



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 32/184 (17%)

Query: 39  NNASEYNTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI---------VGT 86
           N+   YN +  +L+   SQ RF     + DDM   GV+ +    + LI         VG 
Sbjct: 119 NDPFIYNRLFLTLSRSSSQLRFEQTESLLDDMEKRGVKGSISTVNILIGFFGDLDRCVGL 178

Query: 87  MK--GSR---------LQDTFFFRDQMKA---------NGFLPDVAVYNYLISVCGKCKN 126
           +K  G R         LQ     RD  KA          G+  D+  +N L+    K + 
Sbjct: 179 VKKWGLRFNAYSYKCLLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQK 238

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A ++FE+MK+   +P+  TY  ++     AG+ D   A+ + M   G  L+   Y  
Sbjct: 239 VDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNT 298

Query: 187 LITA 190
           +I A
Sbjct: 299 MIEA 302



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 59/144 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S     R      +++++     QP    ++SLI    K   + +      +M+
Sbjct: 468 YNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQ 527

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI   GK    + A  +F+EM      PN  TY  LL+    +G+  
Sbjct: 528 EKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTA 587

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   +   G   D   YA L
Sbjct: 588 EAVDLYAKLKQQGLTPDSITYAVL 611


>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 584

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 130/297 (43%), Gaps = 11/297 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+V +LT  +RF  +  +   +  +GV+P   LF+++I       ++ +      +MK
Sbjct: 81  YTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMK 140

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAGQL 162
             G  P  + +N LI   G      +A+++ E M +   VKPN +TY  L+ A     +L
Sbjct: 141 ECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNEL 200

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +  + ++  M  +G   D   Y  L  A         D A ++I  ++Q    + V+ + 
Sbjct: 201 EEAWNVMHKMVNSGMQPDIVTYNTLARAFAQN--GETDNAERLILKMQQYN--NKVKPNE 256

Query: 223 NNAENEMMGVSKEELYNLPTA---EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
                 + G  KE   N+  A    Y  +  G     + V++       ++ D   +E  
Sbjct: 257 RTCGIIIRGYCKEG--NMTEALRFLYKMKELGVHPNPV-VFNSLIKGYLDITDTDGVEEA 313

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           L ++++    PDV      +  +  SG +DN  ++F+D + +E  P  + Y+ L +G
Sbjct: 314 LTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKG 370



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P   +F+SLI G +  +           M+  G  PDV  Y+ +++        D  
Sbjct: 286 GVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNC 345

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             IF++M K E++P+ Q Y  L      AGQ D   A++  MT  G   +   +  +I+ 
Sbjct: 346 EEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISG 405



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTF--FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           G++P   + +S I+     S L D     F D +KA    PD+  Y+ L     +    D
Sbjct: 321 GIKPDV-VTYSTIMNAWSSSGLMDNCEEIFDDMVKAE-IEPDIQAYSILAKGYVRAGQPD 378

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A  +   M KY ++ N   +  +++   AAG++D    +   M   G  L+   Y  LI
Sbjct: 379 KAEALLNSMTKYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETLI 438

Query: 189 TAH 191
             +
Sbjct: 439 WGY 441



 Score = 38.1 bits (87), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 27/135 (20%), Positives = 57/135 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++ + +S        +++DDM+   ++P    +  L  G ++  +        + M 
Sbjct: 329 YSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMT 388

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   +V ++  +IS        D A+R++E+M +     N +TY  L+     A Q  
Sbjct: 389 KYGLQANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPW 448

Query: 164 PVYAIVRDMTAAGAG 178
               ++  M  +G  
Sbjct: 449 KAEELLVTMEESGVA 463


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +N A +    N+++T+++   R  L  ++++ M   GV      F++++    K  ++  
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGL 242

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            + F D+M+A G  P+   +N LI+  G+ K + +A ++ +EM+   + P+  TY C++ 
Sbjct: 243 AYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIE 302

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           A A AG +   + +  DM  AG   +   Y  LI A
Sbjct: 303 AFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDA 338



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 122/288 (42%), Gaps = 6/288 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +     NA  Y  V+ SL       L  ++ D M+  G++P   L + ++ G  K 
Sbjct: 38  QELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKA 97

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           + + +       MK+ G   D   Y  LI   G+CK  ++A  +F+EM++    P+   Y
Sbjct: 98  NMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAY 157

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++    AG+++    +++ M       D +    LITA  ++  R  + A +I E +
Sbjct: 158 TNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITA-VSRTGRT-ELACEIFERM 215

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           ++S    +V T   NA  +  G + +        + +  RG  +      ++   +    
Sbjct: 216 KKS--GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARG--IKPNSITFNTLINCLGR 271

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            K       +L+ ++    +PDV+     I  +  +G++    ++F D
Sbjct: 272 AKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGD 319



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   +   A N   +N ++       +  L     D+M   G++P    F++LI    + 
Sbjct: 213 ERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRA 272

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
               + +    +M++ G  PDV  Y  +I    K  N  +A  +F +M+K     N  TY
Sbjct: 273 KYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTY 332

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             L++A   AG+      I  DM   G
Sbjct: 333 NLLIDALVKAGRYQDARDIYFDMKKKG 359



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 9/153 (5%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+ +     R   + D + ++   G +P    +  +I   +K   +       D+M  
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIK 77

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  PD  + N ++   GK    D+A ++F  MK      +  TY  L+ +     + + 
Sbjct: 78  TGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 165 VYAIVRDMTAAGAG---------LDKFCYAGLI 188
              +  +M   G           +D +C AG I
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRI 170


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + R    RD+  DM   G+ P R  F+ L+VG  +   L++     + M 
Sbjct: 235 YNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMS 294

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            N  +PD   YN +IS  G CK     +A+R+ EEM+  ++ P+  TY  L+N C   G 
Sbjct: 295 QNSVVPDAWTYNVMIS--GFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGS 352

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
            +  + ++ +M   G   +   Y  ++       K+   D T  K+ E
Sbjct: 353 SEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEE 400



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 132/310 (42%), Gaps = 16/310 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSL----TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           EE      + +   YNT++       +S+  F L+    ++M   G++P    ++ ++  
Sbjct: 326 EEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLI----EEMEGRGMKPNSVTYNVMVKW 381

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
            +K  ++ +      +M+ +G LPD+  YN LIS   K    D+A R+ +EM +  +K +
Sbjct: 382 FVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMD 441

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             T   +L A     +LD  + ++      G  +D+  Y  LI  +  K  +A       
Sbjct: 442 DVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYF-KHEKASQALRLW 500

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
            E+ E+    S +  +   A    MG + + +  L          G +   +T   +   
Sbjct: 501 DEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDEL----LESGLVPDEITYNTIIHG 556

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL-HSGDIDNGHKVFEDYICSEKF 324
            C E +  +A +   +M++K+ K PDV +    + C L   G ++   K+F  +I   K 
Sbjct: 557 YCQEGQVEKAFQFHNKMVEKNFK-PDV-VTCNTLLCGLCKEGMLEKALKLFNTWISKGKD 614

Query: 325 PPAELYATLV 334
             A  Y T++
Sbjct: 615 VDAVSYNTII 624



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 45/213 (21%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    +     D  D+++  G+ P    ++++I G  +  +++  F F ++M 
Sbjct: 515 YNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMV 574

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIF--------------------------- 134
              F PDV   N L+  CG CK    ++A+++F                           
Sbjct: 575 EKNFKPDVVTCNTLL--CGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKR 632

Query: 135 --------EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
                   EEM++ ++ P+  TY  +L     AG++      +  +   G   ++F   G
Sbjct: 633 FGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSENQFLELG 692

Query: 187 LIT-AHTNKIPR-----ADDTATKIIELVEQSK 213
               A T++IP+     A   + KI EL  Q +
Sbjct: 693 KRQDARTSEIPQEPHPNAIAYSNKINELCSQGR 725



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 45  NTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           NT++ +L    S     L + V+ D +  GV+   + F+ LI G+   +R  +      +
Sbjct: 163 NTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGK 222

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           M+  G  PD   YN ++   G CK    ++A  +  +MK   + PN  T+  L+  C   
Sbjct: 223 MRDYGCPPDNITYNTILD--GLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRL 280

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G L     ++  M+      D + Y  +I+ 
Sbjct: 281 GWLKEAANVIELMSQNSVVPDAWTYNVMISG 311


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 139/348 (39%), Gaps = 33/348 (9%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           R F       EE  RR+ A N   YN +++ L             ++M+  G+ P    +
Sbjct: 257 RDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTY 316

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
            +L+ G  KGSRL++     D+M  +G  P++ VY  L+    K   + +A  I +EM  
Sbjct: 317 GALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMIS 376

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
             V+PN   Y  L+      GQL     ++++M   G   D F Y  L+  H  +  +  
Sbjct: 377 AGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDK-- 434

Query: 200 DTATKIIELVEQSKGWSSVETSG-------NNAENEMMGVSKEELYN--LPTAEYV---- 246
           D A +++  +  S    +V + G        N E++  G   EE+ +  L    ++    
Sbjct: 435 DGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPL 494

Query: 247 ---HRRGGFLSRL---------------LTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288
              H + G +S                 L  Y+      + +  ++  E     ++K   
Sbjct: 495 IIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGL 554

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            PD +     I  Y  +G+++   ++    + S   P A+ Y  L+EG
Sbjct: 555 VPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEG 602



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           G R     A  +E +      N   Y T+V     + +     D+  +M+  GVQP + +
Sbjct: 326 GSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIM 385

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +LI G  K  +L        +M   G  PD   YN L+    +  + D A  +  EM+
Sbjct: 386 YDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMR 445

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
              + PN  +Y  ++N     G+      ++ +M + G   + F YA LI  H+ +
Sbjct: 446 NSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKE 501



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 113/307 (36%), Gaps = 41/307 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        NA  Y  ++   + +    L  +  + M    V P    ++SLI G    
Sbjct: 477 EEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTV 536

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++   +  Q++  G +PD   Y+ LI    K  N ++A ++  +M    +KPN  TY
Sbjct: 537 GRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTY 596

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             LL     +   + V +I++ M  +G   D   Y  +I      + R+++     + L 
Sbjct: 597 TDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVI----RNLSRSENMEVAFMVLT 652

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           E       VE +G                              L   L +Y        +
Sbjct: 653 E-------VEKNG------------------------------LVPDLHIYSSLISGLCK 675

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
           + D++    LL+ + K+   P +      I  +  SGDI     VF+  +     P    
Sbjct: 676 IADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVT 735

Query: 330 YATLVEG 336
           Y  L++G
Sbjct: 736 YTALIDG 742



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 67  MMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           MM D G+ PTR   + L+   ++   ++  +  +  M+  G LPDV  Y+  I    K +
Sbjct: 198 MMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKAR 257

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           + D A ++FEEM++ +   N  TY  +++    +G ++  +    +M   G   D F Y 
Sbjct: 258 DFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYG 317

Query: 186 GLITA 190
            L+  
Sbjct: 318 ALMNG 322



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T + +    R F   + V+++M           ++ +I G  +   +++ F F+++M 
Sbjct: 246 YSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 305

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PD   Y  L++  G CK S   +A  + +EM    +KPN   Y  L++     G+
Sbjct: 306 DYGLSPDAFTYGALMN--GLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK 363

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               + I+++M +AG   +K  Y  LI
Sbjct: 364 TAEAFDILKEMISAGVQPNKIMYDNLI 390



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/283 (18%), Positives = 118/283 (41%), Gaps = 17/283 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y  ++        +  +  +   M+  G +P   ++  +I    +   ++  F   
Sbjct: 592 NADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVL 651

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++ NG +PD+ +Y+ LIS   K  + ++A+ + +EM K  ++P    Y  L++    +
Sbjct: 652 TEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRS 711

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE--LVEQSKGW 215
           G +     +   + A G   +   Y  LI  +     I  A D   ++++  +   +  +
Sbjct: 712 GDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVY 771

Query: 216 SSVETSGNNAEN-EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           + + T  ++A + E      EE++N   A             +++++   H   +   +Q
Sbjct: 772 NVLATGCSDAADLEQALFLTEEMFNRGYAN------------VSLFNTLVHGFCKRGKLQ 819

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             E LL ++      P+   V + +  +  +G +   H+VF +
Sbjct: 820 ETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAE 862



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E A+         YN ++            R+V+D ++  G+ P    + +LI G  K 
Sbjct: 687 DEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKN 746

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
             + D F    +M   G  PD  VYN L + C    + +QA+ + EEM
Sbjct: 747 GDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEM 794


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFEHRKRMIQENIRLDDVAYTALISG 361



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 137/318 (43%), Gaps = 28/318 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE+    Y  +   +N +      +    + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 191 GDLDEGFKLKSAMHASGVXPDVYTYSVLIN--GLCKESKMDXANELFDEMLVKGLVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 309 -----SMKGLKPDKITYTTLID---GCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYT 356

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFEDY 318
           A     C E + V A + + EML    K PD   Y ++ N  C    GD+  G K+ ++ 
Sbjct: 357 ALISGLCQEGRSVDAEKMMREMLSVGLK-PDTGTYTMIINEVC--KKGDVGKGSKLLKEM 413

Query: 319 ICSEKFPPAELYATLVEG 336
                 P    Y  L+ G
Sbjct: 414 QXDGHAPSVVTYNVLMNG 431


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 165/413 (39%), Gaps = 69/413 (16%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++       +     V+++M L G  P +  F++L+    K  R ++      +M+
Sbjct: 291 YNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEME 350

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +GF P +  YN LIS   +     +A+ + ++M +  +KP+  TY  LL+    AG  +
Sbjct: 351 FSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDE 410

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK------GWSS 217
           P   I  +M AAG   +   +  LI  H N+   A+    K+ E +E          W++
Sbjct: 411 PAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAE--MMKVFEEIEICNCAPDIVTWNT 468

Query: 218 VET--SGNNAENEMMGVSKE--------ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
           +      N  ++E+ GV KE        E     T    + R G   + + VY     A 
Sbjct: 469 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEA- 527

Query: 268 AELKDVQAMETLLEMLKKD---RKSPDVYIVMQNIRC-------------YLHSGDIDNG 311
               D+ +   +L  L +     +S  V+  M++ RC             Y +S +I+  
Sbjct: 528 GVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERM 587

Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVN------MNSRNIFL-- 363
           H + E           E+Y+ L E       P  + L    LVN      M + + F   
Sbjct: 588 HTLAE-----------EIYSGLTE-------PVPVLLKTLVLVNSKCDLLMETEHAFEEL 629

Query: 364 ----SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               SP + +   ++A   +      AN I + M     +PSL    A YN L
Sbjct: 630 KKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSL----ATYNSL 678



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL--IVGTMKGSRLQDTFFFRDQ 101
           Y +++T+  S  R+     V+  M  +G +PT   ++ +  + G M G            
Sbjct: 220 YTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKM-GMPWSKISGLVHG 278

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MK++G  PD   YN LIS C +    ++A ++FEEMK     P+  T+  LL+    + +
Sbjct: 279 MKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRR 338

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                 ++++M  +G       Y  LI+A+
Sbjct: 339 PKEAMEVLKEMEFSGFSPSIVTYNSLISAY 368



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 58/138 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ + M   G  P+   ++SL+    +    + +     ++ A G  PD+  YN +I   
Sbjct: 658 EILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAY 717

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            +      A RIF  MK Y + P+  TY   + + AA    +    +VR M   G   ++
Sbjct: 718 CRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQ 777

Query: 182 FCYAGLITAHTNKIPRAD 199
             Y  ++  +     RAD
Sbjct: 778 NTYNSIVDGYCKHSRRAD 795



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 145/378 (38%), Gaps = 20/378 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S    ++T L  + +      + +++  DG       + SLI       R +D     
Sbjct: 181 NCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVF 240

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR-IFEEMKKYEVKPNGQTYVCLLNACAA 158
            +M+  G  P +  YN +++V GK       I  +   MK   V P+  TY  L++ C  
Sbjct: 241 KKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRR 300

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
               +    +  +M  +G   DK  +  L+  +     R    A ++++ +E S G+S  
Sbjct: 301 GSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKS--RRPKEAMEVLKEMEFS-GFSPS 357

Query: 219 ETSGNNAENEMM--GVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             + N+  +     G+ +E  EL +    + +       + LL+ +  A        D  
Sbjct: 358 IVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGM------DEP 411

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           AM    EM     K P++      I+ + + G      KVFE+       P    + TL+
Sbjct: 412 AMRIFGEMRAAGCK-PNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLL 470

Query: 335 EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394
             A+FG    GM      +     R  F+ P   +   L++A  + G +  A  ++  M 
Sbjct: 471 --AVFGQN--GMDSEVSGVFKEMKRAGFV-PERDTFNTLISAYSRCGSFQQAMAVYKRML 525

Query: 395 ARKITPSLPAVEAYYNGL 412
              +TP L +  A    L
Sbjct: 526 EAGVTPDLSSYNAVLAAL 543


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 115/296 (38%), Gaps = 41/296 (13%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE  R+ Y +    YNT+++ L   RR     D+Y ++M  G  PT   +  L+ G +K 
Sbjct: 939  EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 998

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             R++D     ++M   G   +  +YN L++      N+++   +F++M    + P+ ++Y
Sbjct: 999  GRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSY 1058

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              +++    AGQL+      R +   G   D   Y  LI     K  R ++  +      
Sbjct: 1059 TIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG-LGKSKRLEEAVSLF---- 1113

Query: 210  EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
                             NEM                  ++ G +  L T   +  H    
Sbjct: 1114 -----------------NEM------------------QKKGIVPNLYTYNSLILHLGKA 1138

Query: 270  LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
             K  +A +   E+L K  K P+V+     IR Y  SG  D+ +  +   I     P
Sbjct: 1139 GKAAEAGKMYEELLTKGWK-PNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP 1193



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN +V  L          +VY  MM+DGV P+   +  L+V   K   ++   +  
Sbjct: 284 NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLL 343

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+A+G  P+V  Y   I V G+ K  D+A RI  +M+    KP+  T+  L+     A
Sbjct: 344 REMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDA 403

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G++     +   M  +    D+  Y  L+
Sbjct: 404 GRISDAKDVFWKMKKSDQKPDRVTYITLL 432



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 1/176 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y  V+ +L    R F   +++D+M   G+ P +  ++SLI G +K  R  D  
Sbjct: 456 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDAL 515

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M  +G  P+   +   I+  GK   S +AI+ +E MK   + P+      +L   
Sbjct: 516 ELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 575

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           A +G+L     +  ++ A G   D   Y  +I    +K  + D+      +++E +
Sbjct: 576 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKC-CSKASKFDEAVKIFYDMIENN 630



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L    R  + + V+ ++   GV P    +  +I    K S+  +       M  
Sbjct: 569 NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIE 628

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N  +PDV   N LI    K    D+A RIF ++K+  ++P   TY  LL      G++  
Sbjct: 629 NNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKE 688

Query: 165 VYAIVRDM 172
           V  ++ +M
Sbjct: 689 VMHLLEEM 696



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M  DG       + ++I    +  R+ +     D+MK  G +P+   YN LIS  
Sbjct: 446 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 505

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            K      A+ +F+ M  +  KPNG T+V  +N    +G+
Sbjct: 506 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGE 545



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 43  EYNTVVTSLTSQRRFFLLRD----VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +Y T+ T L S  +  L+++    + D  +  G +  R   HSL+ G +K + ++ +  F
Sbjct: 773 DYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEF 832

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            + + ++G   D      LI    K K + +A  + ++ K + V      Y  L+     
Sbjct: 833 AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVD 892

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +D    +  +M   G G D+F Y  L+ A
Sbjct: 893 ENLIDIAEGLFAEMKELGCGPDEFTYNLLLDA 924



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 57/145 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++   +   +F     ++ DM+ +   P     +SLI    K  R  + +    Q+K
Sbjct: 603 YTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLK 662

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P    YN L++  G+     + + + EEM      PN  TY  +L+     G ++
Sbjct: 663 EMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVN 722

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++  MT  G   D   Y  +I
Sbjct: 723 DALDMLYSMTTKGCIPDLSSYNTVI 747



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 56/296 (18%), Positives = 112/296 (37%), Gaps = 12/296 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  ++  L    R    +DV+  M     +P R  + +L+         Q      + MK
Sbjct: 393 HTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMK 452

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G+  +V  Y  +I    +     +A+ +F+EMK+  + P   +Y  L++    A +  
Sbjct: 453 ADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFG 512

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE--QSKGWSSVETS 221
               + + M   G   + + +   I  +          + K I+  E  +SKG      +
Sbjct: 513 DALELFKHMDIHGPKPNGYTHVLFINYYGK-----SGESIKAIQRYELMKSKGIVPDVVA 567

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLL 280
           GN     + G++K     +    +   +   +S     Y +    C++     +A++   
Sbjct: 568 GNAV---LFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFY 624

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +M++ +   PDV  V   I     +G  D   ++F         P    Y TL+ G
Sbjct: 625 DMIENN-CVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAG 679



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + +   +  + ++M      P    +++++    K   + D       M 
Sbjct: 673 YNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 732

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD++ YN +I    K +  ++A  IF +MKK  + P+  T   +L +    G + 
Sbjct: 733 TKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLI-PDYATLCTILPSFVKIGLMK 791

Query: 164 PVYAIVRD 171
               I++D
Sbjct: 792 EALHIIKD 799


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 172/438 (39%), Gaps = 48/438 (10%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           ++R  KS  G L R+FF    GA        A +   YN ++  L  +      R ++  
Sbjct: 261 LHRLSKSGNGQLVRKFFNDMIGA------GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQ 314

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G+ P    ++SLI G  K   L++     ++MK  G +PD+  YN LI+   K + 
Sbjct: 315 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 374

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A   F EMK   +KPN  TY  L++A    G +     +  DM   G   ++F Y  
Sbjct: 375 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTS 434

Query: 187 LITAHT------------NKIPRAD------------DTATKIIELVEQSKGWSSVETSG 222
           LI A+             N + +A             D   K   ++E  + + S+   G
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 494

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--------LTVY-HVAFHACAELKDV 273
            +   +   V    ++    AE +      L ++        L +Y  + +  C++ K +
Sbjct: 495 ISPNQQ---VYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK-L 550

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           +  + +LE +K    S +  I    I  Y  +G   +    F++            Y  L
Sbjct: 551 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 610

Query: 334 VEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393
           ++G         ++LA D    M S    L P +     L+    K+    +A  ++D M
Sbjct: 611 IDGLC---KAGIVELAVDYFCRMLSLG--LQPNVAVYTSLIDGLCKNNCIESAKKLFDEM 665

Query: 394 QARKITPSLPAVEAYYNG 411
           Q R +TP + A  A  +G
Sbjct: 666 QCRGMTPDITAFTALIDG 683



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + Y +++  L         + ++D+M   G+ P    F +LI G +K   LQ+     
Sbjct: 638 NVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 697

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M       D+ VY  L+S   +C    QA + F EM +  + P     +CLL      
Sbjct: 698 SRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR 757

Query: 160 GQLDPVYAIVRDMTAAG 176
           GQLD    +  +M   G
Sbjct: 758 GQLDEAIELKNEMERMG 774



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 4/180 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           G    R+   T    EE   R  + N     T++ +     +     + + +M   GV+ 
Sbjct: 543 GHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEA 602

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIR 132
           T   +  LI G  K   ++    +  +M + G  P+VAVY  LI   G CKN+  + A +
Sbjct: 603 TIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLID--GLCKNNCIESAKK 660

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +F+EM+   + P+   +  L++     G L     ++  MT      D   Y  L++  +
Sbjct: 661 LFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFS 720



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D +  M+  G+QP   ++ SLI G  K + ++      D+M+  G  PD+  +  LI   
Sbjct: 625 DYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 684

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            K  N  +A+ +   M +  ++ +   Y  L++  +  G+L        +M   G
Sbjct: 685 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 739


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +N A +    N+++T+++   R  L  ++++ M   GV      F++++    K  ++  
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGL 242

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            + F D+M+A G  P+   +N LI+  G+ K + +A ++ +EM+   + P+  TY C++ 
Sbjct: 243 AYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIE 302

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           A A AG +   + +  DM  AG   +   Y  LI A
Sbjct: 303 AFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDA 338



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 122/288 (42%), Gaps = 6/288 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +     NA  Y  V+ SL       L  D  D M+  G++P   L++ ++ G  K 
Sbjct: 38  QELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKA 97

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           + + +       MK+ G   D   Y  LI   G+CK  ++A  +F+EM++    P+   Y
Sbjct: 98  NMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAY 157

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++    AG+++    +++ M       D +    LITA  ++  R  + A +I E +
Sbjct: 158 TNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITA-VSRTGRT-ELACEIFERM 215

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           ++S    +V T   NA  +  G + +        + +  RG  +      ++   +    
Sbjct: 216 KKS--GVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARG--IKPNSITFNTLINCLGR 271

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            K       +L+ ++    +PDV+     I  +  +G++    ++F D
Sbjct: 272 AKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGD 319



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   +   A N   +N ++       +  L     D+M   G++P    F++LI    + 
Sbjct: 213 ERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRA 272

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
               + +    +M++ G  PDV  Y  +I    K  N  +A  +F +M+K     N  TY
Sbjct: 273 KYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTY 332

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             L++A   AG+      I  DM   G
Sbjct: 333 NLLIDALVKAGRYQDARDIYFDMKKKG 359



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+ +     R   + D + ++   G +P    +  +I   +K   +     F D+M  
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIK 77

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  PD  +YN ++   GK    D+A ++F  MK      +  TY  L+ +     + + 
Sbjct: 78  TGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEE 137

Query: 165 VYAIVRDMTAAGAG---------LDKFCYAGLI 188
              +  +M   G           +D +C AG I
Sbjct: 138 ATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRI 170


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +  ++  + R+ + +  ++ M+ +G++P R  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKAILRRGRYMMAKRYFNKMLSEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K  +    + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC AG
Sbjct: 285 YLAPTDNSIFMRLISSQCNSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKAG 340


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNXMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    G+  E            +L TA EY  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEG-----------HLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411



 Score = 38.5 bits (88), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 4/147 (2%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKA 104
           V+  L   + F L+   Y++ +  G   +   F+ L+   +K    RL  + F  D +  
Sbjct: 107 VJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVF--DAITK 164

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P V  +N L++   K  + D+  R+   M+   V+P+  TY  L+N      ++D 
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDD 224

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAH 191
              +  +M   G   +   +  LI  H
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGH 251


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 164/406 (40%), Gaps = 52/406 (12%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           ++R  KS  G L R+FF    GA        A +   YN ++  L  +      R ++  
Sbjct: 202 LHRLSKSGNGQLVRKFFNDMIGA------GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQ 255

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G+ P    ++SLI G  K   L++     ++MK  G +PD+  YN LI+   K + 
Sbjct: 256 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 315

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A   F EMK   +KPN  TY  L++A    G +     ++ DM   G   ++F Y  
Sbjct: 316 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTS 375

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           LI A+     +A +           ++ W  +        N+M+                
Sbjct: 376 LIDANC----KAGNL----------TEAWKLL--------NDML---------------- 397

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
             + G    ++T   +    C   + ++A E    ML KD  SP+  +    +  Y+ + 
Sbjct: 398 --QAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML-KDGISPNQQVYTALVHGYIKAE 454

Query: 307 DIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPR 366
            +++  K+ +        P   LY +++ G     + + ++  +  L  M SR I  +P 
Sbjct: 455 RMEDAMKILKQMTECNIKPDLILYGSIIWGHC---SQRKLEETKLILEEMKSRGISANPV 511

Query: 367 MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           + +   ++ A  K+G  + A   +  MQ   +  ++       +GL
Sbjct: 512 ISTT--IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 555



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 57/133 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + Y +++  L         + ++D+M   G+ P    F +LI G +K   LQ+     
Sbjct: 579 NVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 638

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M       D+ VY  L+S   +C    QA + F EM +  + P     +CLL      
Sbjct: 639 SRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR 698

Query: 160 GQLDPVYAIVRDM 172
           GQLD    +  +M
Sbjct: 699 GQLDEAIELKNEM 711



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 122/303 (40%), Gaps = 14/303 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T++ +   +        +  DM   G+ P    + SLI    K   L + +   
Sbjct: 334 NVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 393

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + M   G   ++  Y  L+    K     +A  +F  M K  + PN Q Y  L++    A
Sbjct: 394 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKA 453

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS-- 217
            +++    I++ MT      D   Y  +I  H ++    +   TK+I    +S+G S+  
Sbjct: 454 ERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEE---TKLILEEMKSRGISANP 510

Query: 218 -VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ-A 275
            + T+  +A  +  G S + L      + V    G  + ++T Y V      E   V+ A
Sbjct: 511 VISTTIIDAYFK-AGKSSDALNFFQEMQDV----GVEATIVT-YCVLIDGLCEAGIVELA 564

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           ++    ML    + P+V +    I     +  I++  K+F++  C    P    +  L++
Sbjct: 565 VDYFCRMLSLGLQ-PNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALID 623

Query: 336 GAM 338
           G +
Sbjct: 624 GNL 626



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 4/175 (2%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           R+   T    EE   R  + N     T++ +     +     + + +M   GV+ T   +
Sbjct: 489 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTY 548

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM 137
             LI G  +   ++    +  +M + G  P+VAVY  LI   G C N+  + A ++F+EM
Sbjct: 549 CVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLID--GLCXNNCIESAKKLFDEM 606

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +   + P+   +  L++     G L     ++  MT      D   Y  L++  +
Sbjct: 607 QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFS 661



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 50/115 (43%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D +  M+  G+QP   ++ SLI G    + ++      D+M+  G  PD+  +  LI   
Sbjct: 566 DYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 625

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            K  N  +A+ +   M +  ++ +   Y  L++  +  G+L        +M   G
Sbjct: 626 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 680


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 19/310 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+ Y  +   YN ++ +L           V++DM     +P    +  LI  + + 
Sbjct: 210 EEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRA 269

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +      F D+M + G   ++  YN LI   GK K  D+ I +  +M +   +PN  TY
Sbjct: 270 GKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTY 329

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
              L+  A  GQL  +  +   +      ++K  Y+ L+   + +  +  A +   ++  
Sbjct: 330 SITLDILAKEGQLHRLNEV---LDICDRYMNKSIYSYLVKSLSKSGHVSEAHNVFCQM-- 384

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH---RRGGFLSRLLTVYHVAF 264
                  W+S ET   +A   M+ V       L   + +H    +G  ++  + +Y++ F
Sbjct: 385 -------WNSYETGDRDAFVSMLEVLCNSGKTLEAIDLLHMMPEKG--VATDVGMYNMVF 435

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
            A  +LK V  + +L + +K +  +PD++     I  Y   G +D    +FED   S   
Sbjct: 436 SALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCK 495

Query: 325 PPAELYATLV 334
           P    Y +L+
Sbjct: 496 PDVITYNSLI 505



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           +G +K      + F  D+MKANG  PD+  YN +IS  G+    D+A  +FE+M     K
Sbjct: 438 LGKLKQVSFITSLF--DKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCK 495

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           P+  TY  L+N     G LD  + + ++M   G G D F Y+ LI     +NK+  A
Sbjct: 496 PDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMA 552



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMKGSRLQ 93
           +  A +   YN V ++L   ++   +  ++D M  +G+ P  DLF +++++ +     L 
Sbjct: 422 KGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAP--DLFTYNIMISSYGRVGLV 479

Query: 94  D--TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           D  +  F D M A+   PDV  YN LI+  GK  + D+A  +F+EM++    P+  TY  
Sbjct: 480 DKASGLFED-MNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSI 538

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGA 177
           L+     + ++D    +  DM A G 
Sbjct: 539 LIECFGKSNKVDMACNLFLDMIAEGC 564



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +  ++   ++   +   F   ++M+  G++ D+  YN L+    K    DQA ++FE+MK
Sbjct: 189 YKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMK 248

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +   +P+  TY  L+     AG+     +   +M + G  L+   Y  LI A
Sbjct: 249 QKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEA 300



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 1/149 (0%)

Query: 13  SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           S  G L +  F+TS   ++      A +   YN +++S            +++DM     
Sbjct: 436 SALGKLKQVSFITSL-FDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSC 494

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    ++SLI    K   L +      +M+  G+ PDV  Y+ LI   GK    D A  
Sbjct: 495 KPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACN 554

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +F +M      PN  TY  LL+     G+
Sbjct: 555 LFLDMIAEGCIPNVVTYNILLDCLERHGK 583


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++ +     R    R+++ +M+  G+ P+   +  LI G     RL+  F +  +M+
Sbjct: 552 YTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQ 611

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LP+V  YN LI+   K +  DQA   F EM +  + PN  +Y  L+N     G   
Sbjct: 612 EKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQ 671

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT-----AHTNKIPRADDTATKIIELVEQSKGWSSV 218
              ++ + M   G   D   ++ L+           +       T  ++L+ Q+ G ++ 
Sbjct: 672 EALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHGTSTMPTAKVDLLSQTVGAATA 731

Query: 219 ETSGNN-AENEMMGVSKEEL-YNLPTAE 244
            TS ++ AEN    ++KE+L  N+PT +
Sbjct: 732 LTSVSSIAENGH--ITKEQLRQNIPTKK 757



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 108/272 (39%), Gaps = 6/272 (2%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M+L G  PT   ++S I G  K  R+ D       M AN  LPDV  YN LI    + 
Sbjct: 328 EEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRL 387

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            N  +A  +F+E++   + P   TY  LL+     G+L+    +  +M   G   D   Y
Sbjct: 388 GNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
             L+   + K+           E++ +     S   +        +G +        + +
Sbjct: 448 TILVNG-SCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF----SLQ 502

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                 GF   L+ +Y+V      +L +++    LL+ +  D   PD       I  +L 
Sbjct: 503 EEMLAKGFPPDLI-IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +G +  G ++F + +     P    Y  L+ G
Sbjct: 562 NGRLRKGREIFYEMLSKGLTPSVVTYTVLIHG 593



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E      A +   Y  +V          + ++ +D+M+ +G++     + + IVG +K  
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLG 493

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
                F  +++M A GF PD+ +YN ++    K  N ++A  + ++M    V P+  TY 
Sbjct: 494 DTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYT 553

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +++A    G+L     I  +M + G       Y  LI  H  K
Sbjct: 554 SIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGK 597



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 67/164 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +  +   YN VV  L          ++   M+ DGV P    + S+I   ++ 
Sbjct: 503 EEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLEN 562

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL+       +M + G  P V  Y  LI         ++A   F EM++  + PN  TY
Sbjct: 563 GRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITY 622

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             L+N      ++D  Y    +M   G   +K+ Y  LI  + N
Sbjct: 623 NSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCN 666



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY  M   G++PT   +++L+    KG ++Q       +M+  G  P+   YN LI+  
Sbjct: 220 EVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGL 279

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    +QA  +  EM K  +K +  TY  L+      G L    ++  +M   GA    
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTV 339

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELV 209
             Y   I     K+ R  D   ++ +++
Sbjct: 340 ATYNSFIYGLC-KLGRMSDAMQQLSDML 366


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++   ++      R ++ +M  +G +P+   ++ ++ G +K   +++   F+
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 446

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++M+  G +PD+  Y+Y   V G C N   D A+R+FEEMK+   KPN   Y  L++  A
Sbjct: 447 NEMEKKGLVPDI--YSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 504

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNK 194
             G+ +  + +  +M   G   D   Y+ L+ + HT+K
Sbjct: 505 KEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDK 542



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 161/407 (39%), Gaps = 54/407 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     NA  YN+++ + T ++    + ++   M  +G++PT   +  L+ G    
Sbjct: 167 DEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAA 226

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       ++MK+     DV  Y+ +I+   +  N  +A  +F+E     ++PN  TY
Sbjct: 227 RDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTY 286

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+N     GQ++    +V DM   G G+++  +  +I  +  K     D A +I  ++
Sbjct: 287 GALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRK--NMVDKALEIKMIM 344

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           E+                  MG+ + ++Y   T     RR   +                
Sbjct: 345 EK------------------MGI-ELDVYTYNTLACGLRRANRMD--------------- 370

Query: 270 LKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
               +A   L  M++K  +   V Y  + +I C  + GD+    ++F +   +   P   
Sbjct: 371 ----EAKNLLRIMIEKGVRPNHVSYTTLISIHC--NEGDMVEARRLFREMAGNGAEPSLV 424

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANY 388
            Y  +    M GY  KG     +   N   +   L P + S   LV     +G    A  
Sbjct: 425 TYNVM----MDGYIKKGSIREAERFKNEMEKK-GLVPDIYSYAALVHGHCVNGKVDVALR 479

Query: 389 IWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLL 435
           +++ M+ R   P+L A  A  +GL      A + R     + YDN+L
Sbjct: 480 LFEEMKQRGSKPNLVAYTALISGL------AKEGRSEEAFQLYDNML 520



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 70  DGVQPTRDLFHSLIV-GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           D V P   L  S++V G  K  R+       D+M  +G   +   YN L+    + K+ D
Sbjct: 139 DSVTP---LSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDD 195

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +   + + M+   ++P   TY  L++  +AA  +  V A+  +M +     D + Y+ +I
Sbjct: 196 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 189 TAH 191
            A+
Sbjct: 256 NAY 258


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 211 YSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQML 270

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 271 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGD 328

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 329 LDTAFXHRKRMIQENIRLDDVAYTALISG 357



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 126/297 (42%), Gaps = 24/297 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 127 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 186

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PN  
Sbjct: 187 GDLDEGFRLKSAMLASGXXPDVYTYSVLIN--GLCKESKMDGANELFDEMLVKGLVPNXV 244

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 304

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG   ++         + G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 305 -----SXKG---LKPDKFTYTTLIDGCCKEG--DLDTA-FXHRK-RMIQENIRLDDVAYT 352

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           A     C E + V A + L EML      PD       I  +   GD+  G K+ ++
Sbjct: 353 ALISGLCQEGRSVDAEKMLREMLSVGL-XPDAGTYTMIINEFCKKGDVWKGSKLLKE 408



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M   G++P +  + +LI G  K   L   F  R +M 
Sbjct: 281 YNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMI 340

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM    + P+  TY  ++N     G +
Sbjct: 341 QENIRLDDVAYTALISGLCQEGRSVD-AEKMLREMLSVGLXPDAGTYTMIINEFCKKGDV 399

Query: 163 DPVYAIVRDM 172
                ++++M
Sbjct: 400 WKGSKLLKEM 409


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 129/328 (39%), Gaps = 18/328 (5%)

Query: 16  GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G LG+  RF V      E +R     N   +NT++     +     +  V + M   GV+
Sbjct: 392 GMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVE 451

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
            +RD +++LI    +     + F   ++M + GF P +  YN L++V  +  +   A  I
Sbjct: 452 LSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSI 511

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +M+    KPN Q+Y  LL   A  G +  + AI +++              L+ A+  
Sbjct: 512 VSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIAN-- 569

Query: 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGV-SKEELYNLPTAEYVHR 248
                     K   L    K +  V+  G N +    N M+ + +K  +Y+  T  +   
Sbjct: 570 ---------FKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSI 620

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
           +   LS  L  Y+      A+  +    E +L  LK  +  PDV      I  +   G I
Sbjct: 621 KQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLI 680

Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEG 336
               ++  + I     P    Y TLV G
Sbjct: 681 KEAQRILSEMIADGMAPCVVTYHTLVGG 708



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQ-RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  R+  A     YN V+       R +  +  + D+M   GV+P      ++I    + 
Sbjct: 198 ELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRD 257

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + +   F + +KA G  P V  YN L+ V GK  N  +A+R+ +EM++   +P+  TY
Sbjct: 258 GLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTY 317

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             L    A AG  +     +  MT+ G   + F Y  ++TA+ N I + D+
Sbjct: 318 NELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGN-IGKVDE 367



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 58/127 (45%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M   G+ P    +++++       ++ +     DQMK +G +P+V  YN+++ + GK 
Sbjct: 338 DTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKK 397

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
                 + +  EM +    PN  T+  +L  C   G  D V  ++  M + G  L +  Y
Sbjct: 398 SRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTY 457

Query: 185 AGLITAH 191
             LI A+
Sbjct: 458 NTLIAAY 464



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YNTV+T+  +  +      ++D M   G  P  + ++ ++    K SR        
Sbjct: 348 NAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEML 407

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  +G  P+   +N +++VCGK    D   R+ E MK   V+ +  TY  L+ A    
Sbjct: 408 GEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRC 467

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           G     + +  +MT+AG       Y  L+    N + R  D +T
Sbjct: 468 GSRTNAFKMYNEMTSAGFAPCLTTYNALL----NVLSRQGDWST 507



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           RR        +E   R Y  +   +N++++       +  + +++D +   G+ P    +
Sbjct: 573 RRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITY 632

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM 137
           +SL+    K S   +     +Q+K++   PDV  YN +I+  G CK     +A RI  EM
Sbjct: 633 NSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVIN--GFCKQGLIKEAQRILSEM 690

Query: 138 KKYEVKPNGQTYVCLLNACAA 158
               + P   TY  L+   A+
Sbjct: 691 IADGMAPCVVTYHTLVGGYAS 711



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/113 (21%), Positives = 47/113 (41%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++D+   G  P    +++L+    K     +      +M+ +G  PD   YN L     +
Sbjct: 267 FEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYAR 326

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
               ++A +  + M    + PN  TY  ++ A    G++D   A+   M  +G
Sbjct: 327 AGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSG 379


>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 481

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN  I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 XALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT +      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++       ++MK  G  P+   Y+ L+  +C   K S+  + + E M K
Sbjct: 225 TLIKGYVSVDQVDXALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLISSHCXSGNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXG 340


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 19/375 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  ++T+V  L    R      V+ +M+  G+Q   ++ ++LI  T +   L+      
Sbjct: 46  NAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLL 105

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M A+ F+ DV  Y+YL+   GK   + +A+ +F  M+K    P+   Y  L++     
Sbjct: 106 HHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQ 165

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G++D    ++ DM   G   D   Y  +I   ++      + A     ++++ K    V 
Sbjct: 166 GKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSS--CGRYEKAYSFFGMMKRRKHSPDVV 223

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T  N   N   G+ K    +     +   +       LT +       A+      ME  
Sbjct: 224 TY-NTLLN---GLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAK---AGRMEDA 276

Query: 280 LEM---LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           LE    L K    P+ YI    I  +  SG +D G+++F+D I    FP +  Y  LV G
Sbjct: 277 LEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLG 336

Query: 337 -AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
            +  G+T   M+L Q+ +   +      +P + +  +L+ +   +G    A  ++  M A
Sbjct: 337 FSRRGHTSMAMELLQEMVREGH------TPALATYNVLIRSLSMAGQVEDAYTLFKEMIA 390

Query: 396 RKITPSLPAVEAYYN 410
           +   P +    A  N
Sbjct: 391 KGFNPDMQTYSALPN 405



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR ++ +   YNT++  L   RR     D++D+M  +   P    F +LI    K  R++
Sbjct: 215 RRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME 274

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVC 151
           D      ++   G +P+  +YN LIS  G C++   D+   +F++M +    P+  TY  
Sbjct: 275 DALEQSARLVKMGHVPNSYIYNALIS--GFCRSGQVDKGYELFQDMIECSCFPDSITYTI 332

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAG 176
           L+   +  G       ++++M   G
Sbjct: 333 LVLGFSRRGHTSMAMELLQEMVREG 357



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 67/165 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  R+    +   YN V+  L+S  R+      +  M      P    +++L+ G  K 
Sbjct: 176 EDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKL 235

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  +     D+M+AN  +PD+  +  LI    K    + A+     + K    PN   Y
Sbjct: 236 RRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIY 295

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++    +GQ+D  Y + +DM       D   Y  L+   + +
Sbjct: 296 NALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRR 340


>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 756

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+   +  + R+ + +  ++ M+ +GV+PTR  ++ ++ G     RL+    F D MK
Sbjct: 222 YNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFDDMK 281

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   YN +I+   + K  D+A ++F EMK    +P+  TY  ++    +  ++D
Sbjct: 282 TRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIKGYLSVDRVD 341

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               I  +M + G   +   Y+ L+
Sbjct: 342 DGLRIFEEMRSFGIEPNATTYSTLL 366



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 13/161 (8%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           DM   GV    D+F  LI    K   +Q++     +MK  G    +  YN L  V  +  
Sbjct: 174 DMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNTLFKVILRRG 233

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
               A R F +M    V+P   TY  +L     + +L+       DM   G   D   Y 
Sbjct: 234 RYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFDDMKTRGISPDAVTYN 293

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE 226
            +I  +     +  D A K+            VE  GNN+E
Sbjct: 294 TIINGYCR--FKKMDEAEKLF-----------VEMKGNNSE 321


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 30/285 (10%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD + SLI    +      +     +M   G  PD++ YN ++S   
Sbjct: 446 VFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALA 505

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +QA ++F EM+  + +P+  +Y  LL+A A A +LD + A+  D+          
Sbjct: 506 RGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDI---------- 555

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGW-------SSVETSGNNAENEMMGVSK- 234
            YA  I +H   +       +K+  L E  K +        S++ +  NA   + G ++ 
Sbjct: 556 -YAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRM 614

Query: 235 ----EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP 290
               EE+ +L        +G  ++     Y+   H  + L D +  E +L  +K     P
Sbjct: 615 VKKVEEILSL-------MKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARP 667

Query: 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           D Y     I  Y   G +    ++F +   S   P    Y   V+
Sbjct: 668 DRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVK 712



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    +   Y T+++ L    +       YD+M+ +G +P    +++LI      
Sbjct: 343 EEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVR 402

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  +     D +++ GF+PDV  +N L++V G+     +   +F+EMKK    P   TY
Sbjct: 403 GKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTY 462

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           V L+++ +  G  D    I + M  AG   D   Y  +++A
Sbjct: 463 VSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSA 503



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M  DG+   R  +++LI    +G+  ++     D+M+A GF PD   +N L+ V GK 
Sbjct: 238 DSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKA 297

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +  D+AI + +EM+     P+  TY  L+++    G L     +  +M   G   D   Y
Sbjct: 298 RMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITY 357

Query: 185 AGLITA 190
             LI+ 
Sbjct: 358 TTLISG 363



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +M L G  P+   ++SLI   +K   L++    +++M+  G  PDV  Y  LIS   
Sbjct: 306 VLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLD 365

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    D AI  ++EM +   KPN  TY  L+      G+   + A+  D+ +AG   D  
Sbjct: 366 RAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVV 425

Query: 183 CYAGLI 188
            +  L+
Sbjct: 426 TWNTLL 431



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           +AS Y  +V++ +   RF     V+  M+ +G+QP    ++ ++ V +      +D    
Sbjct: 177 DASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVAL 236

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D MK +G   D   YN LIS C +     +A ++F+EM+    +P+  T+  LL+    
Sbjct: 237 VDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGK 296

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           A   D    ++++M   G       Y  LI+++ 
Sbjct: 297 ARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYV 330



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           YNT+++     RR  L ++   V+D+M   G +P +  F+SL+    K     +      
Sbjct: 252 YNTLISCC---RRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLK 308

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M+  G  P V  YN LIS   K     +A  + EEM+   ++P+  TY  L++    AG
Sbjct: 309 EMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAG 368

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRA----DDTATKIIELVEQSKG 214
           ++D       +M   G   +   Y  LI  H    K P      DD  +     V     
Sbjct: 369 KIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSA--GFVPDVVT 426

Query: 215 WSSVET--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY 260
           W+++      N  ++E+ GV KE    +  + YV  R  ++S L++ Y
Sbjct: 427 WNTLLAVFGQNGLDSEVSGVFKE----MKKSGYVPERDTYVS-LISSY 469



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 70/149 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++++S           ++ ++M + G+QP    + +LI G  +  ++       D+M 
Sbjct: 322 YNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEML 381

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P++  YN LI + G      + + +F++++     P+  T+  LL      G   
Sbjct: 382 RNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDS 441

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  + ++M  +G   ++  Y  LI++++
Sbjct: 442 EVSGVFKEMKKSGYVPERDTYVSLISSYS 470



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/120 (19%), Positives = 55/120 (45%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  ++   G +P R  ++++I    +  ++++      +MK++G +PD+  YN  +   
Sbjct: 655 NILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSY 714

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 ++AI +   M     KPN +TY  +L      G++    + + ++     G+ K
Sbjct: 715 VANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQLHPGISK 774



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 3/149 (2%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAI 131
           +P    + +L+    + SR +D      +M ANG  P +  YN ++ V  K        +
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            + + MK   +  +  TY  L++ C           +  +M AAG   DK  +  L+  +
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVET 220
                R  D A  +++ +E      SV T
Sbjct: 295 GKA--RMHDEAIGVLKEMELGGCPPSVVT 321



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           ++K++G  PD   YN +I   G+     +A R+F EMK   + P+  TY   + +  A  
Sbjct: 659 EIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANS 718

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +    +VR M   G   ++  Y  ++
Sbjct: 719 MFEEAIDLVRYMVTRGCKPNERTYNSIL 746


>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
          Length = 521

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R     N   Y T+++           R ++ +M   G  P+   +  +I G  K  R++
Sbjct: 353 RMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIR 412

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVC 151
           +   FR +M+  GF+PDV  Y Y   V G C N   D A+++FEEMK+   +PN   Y  
Sbjct: 413 EAERFRKEMEKKGFVPDV--YTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTA 470

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTN 193
           L++  A  G+ +  + +  DM  AG   D   Y+ L+ + HT+
Sbjct: 471 LISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTD 513



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 20/341 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  R   + NA  YN+++     Q+    ++++ + M  +G++ T   +  L+      
Sbjct: 155 DDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTA 214

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       ++MKAN  + DV +Y  +I+   +  N  +A ++ +E     V+PN +TY
Sbjct: 215 RDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTY 274

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+      GQ++    ++ DM   G GL++  +  +I  +  K     D A KI   +
Sbjct: 275 GVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRK--GMVDDALKIKAAM 332

Query: 210 EQSKGWSSVETSGNNAENEM-MGVSKEELYNLPTAEYVHRRGGFL---SRL--------- 256
           E+     ++ T    A     MGV    +    T   +H + G +    RL         
Sbjct: 333 EKIGVELNIYTYNTLACGLCRMGVVPNYV-TYTTLISIHCKDGDMVEARRLFREMAEKGA 391

Query: 257 ---LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
              +  Y V  H  A+   ++  E   + ++K    PDVY     +  +  +G +D   K
Sbjct: 392 TPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALK 451

Query: 314 VFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTL 353
           +FE+       P    Y  L+ G A  G +    QL  D L
Sbjct: 452 LFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDML 492



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 145/376 (38%), Gaps = 40/376 (10%)

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           ++ G  K  R+ D     D M  +G   +   YN L+    + K+  +   I E M+   
Sbjct: 137 VVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEG 196

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRA- 198
           ++    TY  L+++ + A  +  V A+  +M A     D + Y  +I A+     + RA 
Sbjct: 197 IEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAA 256

Query: 199 ---DDTATKIIELVEQS-----KGWSSVETSGNNAENEMM-------GVSKEE-LYNLPT 242
              D+     +E  E++     KG+  +   G     EM+       GV   + ++N   
Sbjct: 257 KVLDECVGNGVEPNERTYGVLIKGFCKI---GQMEAAEMLLADMQGQGVGLNQIIFNTMI 313

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIR 300
             Y   R G +   L +         EL ++    TL   L +    P+   Y  + +I 
Sbjct: 314 DGYC--RKGMVDDALKIKAAMEKIGVEL-NIYTYNTLACGLCRMGVVPNYVTYTTLISIH 370

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRN 360
           C    GD+    ++F +       P    Y+ ++     GY  KG     +       + 
Sbjct: 371 C--KDGDMVEARRLFREMAEKGATPSVLTYSVMIH----GYAKKGRIREAERFRKEMEKK 424

Query: 361 IFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPAD 420
            F+ P + +   LV     +G    A  +++ M+ R   P++ A  A  +GL      A 
Sbjct: 425 GFV-PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL------AK 477

Query: 421 DPRLVVVSRAYDNLLR 436
           + R     + YD++L+
Sbjct: 478 EGRSEAAFQLYDDMLK 493


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 5/158 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++   ++      R ++ +M  +G +P+   ++ ++ G +K   +++   F+
Sbjct: 311 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 370

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++M+  G +PD+  Y+Y   V G C N   D A+R+FEEMK+   KPN   Y  L++  A
Sbjct: 371 NEMEKKGLVPDI--YSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 428

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNK 194
             G+ +  + +  +M   G   D   Y+ L+ + HT+K
Sbjct: 429 KEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDK 466



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 161/407 (39%), Gaps = 54/407 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     NA  YN+++ + T ++    + ++   M  +G++PT   +  L+ G    
Sbjct: 91  DEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAA 150

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       ++MK+     DV  Y+ +I+   +  N  +A  +F+E     ++PN  TY
Sbjct: 151 RDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTY 210

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+N     GQ++    +V DM   G G+++  +  +I  +  K     D A +I  ++
Sbjct: 211 GALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRK--NMVDKALEIKMIM 268

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           E+                  MG+ + ++Y   T     RR   +                
Sbjct: 269 EK------------------MGI-ELDVYTYNTLACGLRRANRMD--------------- 294

Query: 270 LKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
               +A   L  M++K  +   V Y  + +I C  + GD+    ++F +   +   P   
Sbjct: 295 ----EAKNLLRIMIEKGVRPNHVSYTTLISIHC--NEGDMVEARRLFREMAGNGAEPSLV 348

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANY 388
            Y  +    M GY  KG     +   N   +   L P + S   LV     +G    A  
Sbjct: 349 TYNVM----MDGYIKKGSIREAERFKNEMEKK-GLVPDIYSYAALVHGHCVNGKVDVALR 403

Query: 389 IWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLL 435
           +++ M+ R   P+L A  A  +GL      A + R     + YDN+L
Sbjct: 404 LFEEMKQRGSKPNLVAYTALISGL------AKEGRSEEAFQLYDNML 444



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 70  DGVQPTRDLFHSLIV-GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           D V P   L  S++V G  K  R+       D+M  +G   +   YN L+    + K+ D
Sbjct: 63  DSVTP---LSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDD 119

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +   + + M+   ++P   TY  L++  +AA  +  V A+  +M +     D + Y+ +I
Sbjct: 120 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 179

Query: 189 TAH 191
            A+
Sbjct: 180 NAY 182


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 134/283 (47%), Gaps = 24/283 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +    L + V+D +   G++P+   F++L+ G +K   L + F  ++ M 
Sbjct: 139 FNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMH 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  D+A  +F+EM +  + PNG T+  L++     G+
Sbjct: 199 ASGAQPDVYTYSVLIN--GLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGK 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ--SKGWSSVE 219
           LD    I + + + G   D   Y  LI     K    D   T+  +L+++   KG    +
Sbjct: 257 LDLAMEIYKQILSQGLSPDLITYNTLIYGFCKK---GDLKQTR--DLIDEMSMKGLKPDK 311

Query: 220 TSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAFHA--CAELKDVQAM 276
            +     +   G  KE   +L TA EY  +      RL  V + A  +  C E + V A 
Sbjct: 312 ITYTTLID---GSCKEG--DLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAE 366

Query: 277 ETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFED 317
           + L EML    K PD   Y ++ N  C   +GD++ G K+ ++
Sbjct: 367 KMLREMLSVGLK-PDSGTYTIVMNEFC--KNGDVNTGSKLLKE 406



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++     +      RD+ D+M + G++P +  + +LI G+ K   L+  F +R +M 
Sbjct: 279 YNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMI 338

Query: 104 ANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                 D  VY  LIS  G CK   S  A ++  EM    +KP+  TY  ++N     G 
Sbjct: 339 EENIRLDDVVYTALIS--GLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           ++    ++++M   G
Sbjct: 397 VNTGSKLLKEMQRDG 411



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 10/195 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       +  L  ++Y  ++  G+ P    +++LI G  K 
Sbjct: 230 DEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKK 289

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             L+ T    D+M   G  PD   Y  LI   G CK  D   A    ++M +  ++ +  
Sbjct: 290 GDLKQTRDLIDEMSMKGLKPDKITYTTLID--GSCKEGDLETAFEYRKKMIEENIRLDDV 347

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD--TATKI 205
            Y  L++     G+      ++R+M + G   D    +G  T   N+  +  D  T +K+
Sbjct: 348 VYTALISGLCKEGRSVDAEKMLREMLSVGLKPD----SGTYTIVMNEFCKNGDVNTGSKL 403

Query: 206 IELVEQSKGWSSVET 220
           ++ +++     SV T
Sbjct: 404 LKEMQRDGHVPSVVT 418


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 4/169 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ ++   +R + ++  Y D++ +G+ P+   + +L+    +    +D F    +MK
Sbjct: 319 YNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMK 378

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   +V +YN ++++C    + D+A+ IFE+MK   +KP+  T+  ++   +  G++ 
Sbjct: 379 EKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVS 438

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD---TATKIIELV 209
                + +M  AG   + F    LI  +  K  R DD   T  +I ELV
Sbjct: 439 EAENTLNEMFEAGFQPNIFILTSLIQCY-GKAQRIDDVVNTFNRIFELV 486



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 2/170 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A+ ++T++        F    +VY++M   GV+P   +++ L+    +  R      F 
Sbjct: 280 DATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFY 339

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             +  NG  P    Y  L+   G+ +  + A +I+ EMK+  +  N   Y  +L  CA  
Sbjct: 340 QDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADL 399

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE 207
           G +D    I  DM ++G   D + ++ +IT  +   K+  A++T  ++ E
Sbjct: 400 GHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFE 449



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 12/255 (4%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M   G++P      ++I    +   ++      D+ +   +  D   ++ LI +   
Sbjct: 234 FEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKV 293

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N D  + ++EEMK   VKPN   Y  LL+A   A +   V    +D+   G       
Sbjct: 294 AGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVT 353

Query: 184 YAGLITAHTNKIPRADDTATKII-ELVEQSKGWSSVETSGNNAENEMMG-VSKE-ELYNL 240
           YA L+ A+     R  + A KI  E+ E+  G + V  +   A    +G V K  E++  
Sbjct: 354 YAALLHAYGR--ARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFED 411

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
             +  +       S ++T+    F  C ++   +A  TL EM +   + P+++I+   I+
Sbjct: 412 MKSSGIKPDSWTFSSMITI----FSCCGKVS--EAENTLNEMFEAGFQ-PNIFILTSLIQ 464

Query: 301 CYLHSGDIDNGHKVF 315
           CY  +  ID+    F
Sbjct: 465 CYGKAQRIDDVVNTF 479



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 44/93 (47%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++DM   G++P    F S+I       ++ +     ++M   GF P++ +   LI   
Sbjct: 407 EIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCY 466

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           GK +  D  +  F  + +  + P+ +   CLLN
Sbjct: 467 GKAQRIDDVVNTFNRIFELVITPDDRFCGCLLN 499



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 46/101 (45%)

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           KG  L       D+M   G  PD   ++ +IS    C  +D+A+  FE+M  + ++P+  
Sbjct: 188 KGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMPSFGLEPDDV 247

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           T   ++++   AG ++   ++          LD   ++ LI
Sbjct: 248 TLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLI 288



 Score = 38.5 bits (88), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FF++++K N    +V VYN  + V  K ++ D+A ++F+EM +  VKP+  T+  +++  
Sbjct: 165 FFQERLKFNR---EVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCA 221

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                 D        M + G   D    + +I ++
Sbjct: 222 RLCNLADKAVEWFEKMPSFGLEPDDVTLSTMIDSY 256


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           YA +   YN V+ ++   R++ L   +  +M+   + P +  F +LI G  + +RL+D  
Sbjct: 21  YAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAM 80

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            +  +M+A G  PD+ +++ LI + GK K+  +A  +F ++K   + P+   Y  ++N  
Sbjct: 81  GWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLY 140

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             A        ++ +M  AG   D   Y  LI A+
Sbjct: 141 GKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAY 175



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTF--FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           G+Q     ++++I    +   L + F  F+  Q K  G  P+V  YN ++ + G     +
Sbjct: 231 GIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKG-GVEPNVITYNTILFLHGLTLQHE 289

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A+R+  +M++  ++PN  TY  L++     G+ D    + + +   G  +D+  Y  +I
Sbjct: 290 KAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMI 349

Query: 189 TAH 191
             +
Sbjct: 350 VVY 352



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G + +   Y  +I +  + K S  AI +FE M++    P+ +T V LL A     QL+  
Sbjct: 403 GEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDA 462

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADD 200
             +  DM   G  L+K  +  ++  + +  KI  A+D
Sbjct: 463 EKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAED 499


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 75/145 (51%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   ++ + R+ + +  ++ M+ +G++PTR  F+ LI G     +++    F + +K
Sbjct: 118 YDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK+ ++ P   TY  L+   A+  ++D
Sbjct: 178 SREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +V +M   G   +   Y+ L+
Sbjct: 238 DALRLVEEMKGLGIKPNAITYSTLL 262



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R    +   YNT++   T  ++       + +M    + PT   + 
Sbjct: 171 RFF------EDLKSREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G     R+ D     ++MK  G  P+   Y+ L+  +C   K S+    + E + K
Sbjct: 225 TLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPKDNSIFIRLISSQCKAGNLDAAADVLKAMIRLSIPTEAGHYGVLIENYCKAG 340


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           YA +   YN V+ ++   R++ L   +  +M+   + P +  F +LI G  + +RL+D  
Sbjct: 21  YAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAM 80

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            +  +M+A G  PD+ +++ LI + GK K+  +A  +F ++K   + P+   Y  ++N  
Sbjct: 81  GWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLY 140

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             A        ++ +M  AG   D   Y  LI A+
Sbjct: 141 GKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAY 175



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTF--FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           G+Q     ++++I    +   L + F  F+  Q K  G  P+V  YN ++ + G     +
Sbjct: 231 GIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKG-GVEPNVITYNTILFLHGLTLQHE 289

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A+R+  +M++  ++PN  TY  L++     G+ D    + + +   G  +D+  Y  +I
Sbjct: 290 KAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFEMDEILYQSMI 349

Query: 189 TAH 191
             +
Sbjct: 350 VVY 352



 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G + +   Y  +I +  + K S  AI +FE M++    P+ +T V LL A     QL+  
Sbjct: 403 GEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRESGFLPDSETTVVLLAAYGQLRQLEDA 462

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADD 200
             +  DM   G  L+K  +  ++  + +  KI  A+D
Sbjct: 463 EKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAED 499


>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 753

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 5/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + + V++ M+ DG+QPTR  ++ ++ G     RL+    F D MK
Sbjct: 215 YDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLETAMRFYDDMK 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  YN +I+   + K  ++A ++F EMK   + P   +Y  ++    A  ++D
Sbjct: 275 NRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVD 334

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIELV 209
               ++ +M +     +   Y+ L+    +  K+  A D    +IE+V
Sbjct: 335 DGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDI---LIEMV 379



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 108/310 (34%), Gaps = 27/310 (8%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           + N+   +  ++  L    +    R +  DM   GV+    +F  LI    K   +Q+  
Sbjct: 138 FKNDRDTHMKIIEILGRASKLNHARCILLDMPKKGVEWDEYMFVVLIESYGKAGIVQEAV 197

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              ++M   G    +  Y+ L  V  +      A R+F +M    ++P   TY  +L   
Sbjct: 198 KIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGF 257

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRAD---------DTATKI 205
             + +L+       DM   G   D   Y  +I       K+  A+         + A  +
Sbjct: 258 FLSLRLETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTV 317

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           I      KG+ +V+   +           EE+ +      VH     L  L         
Sbjct: 318 ISYTTMIKGYVAVDRVDDGLR------LLEEMKSFNIKPNVHTYSTLLPGL--------- 362

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C   K  +A + L+EM+ +     D  I ++ + C   +GD+     V    +      
Sbjct: 363 -CDAWKMTEAKDILIEMVARHLAPKDNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPT 421

Query: 326 PAELYATLVE 335
            A  Y  L+E
Sbjct: 422 EAGHYGVLIE 431


>gi|168038568|ref|XP_001771772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676903|gb|EDQ63380.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 614

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 11/198 (5%)

Query: 1   MRLLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
           ++L Q+I+R ++S+         +      + A  N AN  + Y  ++T    Q+     
Sbjct: 145 LKLQQTIWRINRSISRCSSLSEALEVVNEMKAAGVNAANEGT-YLALITVCRRQQEGDRA 203

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
             +Y+ M   GV P+   +++LI    +  RL+D +  + +M+A+G  PDV  Y  L+++
Sbjct: 204 LSIYEAMKDAGVIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMAL 263

Query: 121 CGK----------CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170
             K           +  ++A+++++EM+   ++P+  TY  L+ A A A   + V  I R
Sbjct: 264 VVKTGPYRGRSSPAQRLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYR 323

Query: 171 DMTAAGAGLDKFCYAGLI 188
            M AAG   D+F ++ ++
Sbjct: 324 TMVAAGVPPDQFTFSFIL 341



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   RN   ++  YNT++ +    +    + ++Y  M+  GV P +  F  ++     G
Sbjct: 288 QEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAAGVPPDQFTFSFILESAAAG 347

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYE-VKPNG 146
            RL+      ++M+A G  P    +N+LI  C      ++++A  +FEEMK  E V PN 
Sbjct: 348 GRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAEKAWALFEEMKTIEGVVPNA 407

Query: 147 QTYVCLLNACAAAG 160
           QTY  L+ A    G
Sbjct: 408 QTYNHLITASCKGG 421



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 2/153 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP--TRDLFHSLIVGTMKGSRLQDTFF 97
           NA  YN ++T+             Y+ M   G Q   T   F+ LI    +   L+    
Sbjct: 406 NAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFNKLIQSASQTEGLESALK 465

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M   G+ PD   Y+ L+  C +  + +QA+ I +EM+   VKPN      L+ A  
Sbjct: 466 MYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGVKPNQVVQHSLIAAYG 525

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            AGQ +   A  R +      L    Y+ +  A
Sbjct: 526 QAGQWEDAVATFRVLQEGEEQLTSVSYSIIFDA 558



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 63  VYDDM-MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV--AVYNYLIS 119
           ++++M  ++GV P    ++ LI  + KG          + M  +G+   V  A +N LI 
Sbjct: 393 LFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFNKLIQ 452

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
              + +  + A++++ +M     KP+  TY  L+ AC  A  L+   +I ++M   G   
Sbjct: 453 SASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGVKP 512

Query: 180 DKFCYAGLITAHTNKIPRADDTAT 203
           ++     LI A+       D  AT
Sbjct: 513 NQVVQHSLIAAYGQAGQWEDAVAT 536


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++TVV +L  + +     DV D M++ GV+P    +++L+ G    S + +     D M 
Sbjct: 280 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 339

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG+ P+V  YN LI+   K +  D+A  +FEEM + E+ PN  TY  L++     G+L 
Sbjct: 340 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQ 399

Query: 164 PVYAIVRDMTAAG 176
              A+  +M A G
Sbjct: 400 DAIALFHEMVAHG 412



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++ S     R      V   ++  G+QP    F +LI G     ++ D     D+M  
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            GF P+V  Y  LI+   K  N++ AIR+   M++   +P+   Y  ++++     Q+  
Sbjct: 166 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 225

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            + +   M   G   D F Y  LI +  N
Sbjct: 226 AFNLFSKMVGQGISPDIFTYTSLIHSLCN 254



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 69/140 (49%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           YA N   YNT++      +R      ++++M    + P    +++L+ G     RLQD  
Sbjct: 343 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAI 402

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +M A+G +PD+A Y  L+    K  + D+A+ + + ++   + P+ Q Y  +++  
Sbjct: 403 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGM 462

Query: 157 AAAGQLDPVYAIVRDMTAAG 176
             AG+L+    I  ++++ G
Sbjct: 463 CRAGELEAARDIFSNLSSKG 482



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/341 (19%), Positives = 124/341 (36%), Gaps = 15/341 (4%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P+   F+ L+    K  +    F   +QM + G  PDV   N LI+          A  +
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             ++ K  ++P+  T+  L+      G++     +   M   G   +   Y  LI    N
Sbjct: 125 LAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLI----N 180

Query: 194 KIPRADDT--ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
            + +  +T  A +++  +EQ      V    +  ++        E +NL    +    G 
Sbjct: 181 GLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNL----FSKMVGQ 236

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
            +S  +  Y    H+   L + + + TLL  +   +  PDV I    +      G I   
Sbjct: 237 GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEA 296

Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDL 371
           H V +  I     P    Y  L++G              DT+V+        +P + S  
Sbjct: 297 HDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG-----YAPNVISYN 351

Query: 372 LLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
            L+    K      A Y+++ M  +++ P+        +GL
Sbjct: 352 TLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 2/146 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   YN ++     Q        V+D M+ +G  P    +++LI G  K  R+  
Sbjct: 306 RGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDK 365

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             +  ++M     +P+   YN L+           AI +F EM  +   P+  TY  LL+
Sbjct: 366 ATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLD 425

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  LD   A+++  T  G+ +D
Sbjct: 426 YLCKKSHLDEAMALLK--TIEGSNMD 449



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 71/381 (18%), Positives = 146/381 (38%), Gaps = 21/381 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + + + T++  L  + +      ++D M+ +G QP    + +LI G  K           
Sbjct: 136 DTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLL 195

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+     PDV VY  +I    K +   +A  +F +M    + P+  TY  L+++    
Sbjct: 196 RSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNL 255

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTA-TKIIELVEQSKGWS 216
            +   V  ++  M  +    D   ++ ++ A     KI  A D     II  VE +    
Sbjct: 256 CEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTY 315

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
           +    G+  ++EM     E +    T   VH   G+   +++ Y+   +   +++ +   
Sbjct: 316 NALMDGHCLQSEM----DEAVKVFDTM--VH--NGYAPNVIS-YNTLINGYCKIQRMDKA 366

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             L E + +    P+       +    H G + +   +F + +   + P    Y  L++ 
Sbjct: 367 TYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLD- 425

Query: 337 AMFGYTPKGMQL--AQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394
               Y  K   L  A   L  +   N  + P +    +++    ++G    A  I+  + 
Sbjct: 426 ----YLCKKSHLDEAMALLKTIEGSN--MDPDIQIYTIVIDGMCRAGELEAARDIFSNLS 479

Query: 395 ARKITPSLPAVEAYYNGLKDR 415
           ++ + P++       NGL  R
Sbjct: 480 SKGLRPNVRTYTIMINGLCRR 500


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMIDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 196 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 255

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L+N C   G 
Sbjct: 256 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGD 313

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD+  Y  LI+ 
Sbjct: 314 LDSAFEHRKRMIQENIRLDEVAYTALISG 342



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 132/316 (41%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 112 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRX 171

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 172 GDLDEGFXLKSXMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGV 229

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A     ++
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     N   G  KE   +L +A + HR+   +   + +  VA+ 
Sbjct: 290 -----SVKGLKPDKITYTTLIN---GCCKEG--DLDSA-FEHRK-RMIQENIRLDEVAYT 337

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       I  +   GD+  G K+ ++   
Sbjct: 338 ALISGXCQEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKXGDVWXGSKLLKEMQR 396

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 397 DGHVPSVVTYNVLMNG 412


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 197 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQML 256

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 257 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGD 314

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 315 LDTAFEHRKRMIQENIRLDDVAYTALISG 343



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E     Y  +   +N ++     +R   + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 113 KEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 172

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 173 GDLDEGFRLKSAMHASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGV 230

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 231 TFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 290

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--RLLTVYHVA 263
                  KG    + +     +   G  KE   +L TA + HR+       RL  V + A
Sbjct: 291 -----SMKGLKPDKITYTALID---GCCKEG--DLDTA-FEHRKRMIQENIRLDDVAYTA 339

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K PD       I  +   GD+  G K+ ++
Sbjct: 340 LISGLCQEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKE 394


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 1/172 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L  +       ++ ++M   G  P    +++L+ G  K           
Sbjct: 283 NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIH 342

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  NG  P V  Y  LI+   K +N ++A+  F++M+   ++PN +TY  L++  +  
Sbjct: 343 AEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQ 402

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           G L+  Y I+ +MT +G       Y   I  H   + R ++    + E+VE+
Sbjct: 403 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC-VLERMEEALGVVQEMVEK 453



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R   + +   Y  ++ S+   R      + +D M + G++P    + +LI G  +  
Sbjct: 344 EMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 403

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQT 148
            L + +   ++M  +GF P V  YN  I   G C  +  ++A+ + +EM +  + P+  +
Sbjct: 404 LLNEAYRILNEMTESGFSPSVVTYNAFIH--GHCVLERMEEALGVVQEMVEKGLAPDVVS 461

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKII 206
           Y  +++     G+LD  + + ++M   G   D   Y+ LI       ++  A D + +++
Sbjct: 462 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML 521

Query: 207 EL 208
           ++
Sbjct: 522 DM 523



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +  +   YNT++     +  F     ++ +M+ +GV P+   + +LI    K 
Sbjct: 308 EEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKA 367

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L     F DQM+  G  P+   Y  LI    +    ++A RI  EM +    P+  TY
Sbjct: 368 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
              ++      +++    +V++M   G   D   Y+ +I+    K  + RA     +++E
Sbjct: 428 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVE 487



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 44  YNTVVTSLTSQRRFFLL--RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           YN+V+ ++   R    L   +VY +M+   V P    ++ LI G      LQ       +
Sbjct: 180 YNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGE 239

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M+ NG LP+V  YN LI    K    D+A  + + M    ++PN  +Y  ++N     G 
Sbjct: 240 MERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGS 299

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +   + I+ +M   G   D+  Y  L+  +
Sbjct: 300 MKEAWEILEEMGYKGFTPDEVTYNTLLNGY 329



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 150/399 (37%), Gaps = 19/399 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R   + N   YN ++    S          + +M  +G  P    +++LI    K  
Sbjct: 204 EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 263

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQT 148
           R+ + F     M + G  P++  YN +I+  G C+     +A  I EEM      P+  T
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIIN--GLCREGSMKEAWEILEEMGYKGFTPDEVT 321

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  LLN     G       I  +M   G       Y  LI    N + +A +   + +E 
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALI----NSMCKARNL-NRAMEF 376

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-C 267
            +Q +    +  +       + G S++ L N              S  +  Y+   H  C
Sbjct: 377 FDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC 435

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              +  +A+  + EM++K   +PDV      I  +   G++D   ++ ++ +     P A
Sbjct: 436 VLERMEEALGVVQEMVEKGL-APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA 494

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
             Y++L++G        +   L+Q+ L      ++ L P   +   L+ A    G    A
Sbjct: 495 VTYSSLIQGLCEMRRLTEACDLSQEML------DMGLPPDEFTYTTLINAYCVEGDLNKA 548

Query: 387 NYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLV 425
            ++ D M  +   P         NGL  +    +  RL+
Sbjct: 549 LHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLL 587



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 15/173 (8%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G L R F +     +E   +  + +A  Y++++  L   RR     D+  +M+  G+ P 
Sbjct: 473 GELDRAFQM----KQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPD 528

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
              + +LI        L       D+M   GFLPD   Y+ LI+   K   + +A R+  
Sbjct: 529 EFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLF 588

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++   E  P+  TY  L+  C+   +   V A+++           FC  GL+
Sbjct: 589 KLIYEESVPSDVTYDTLIENCSNI-EFKSVVALIKG----------FCMKGLM 630



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 1/188 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E     ++ +   YN  +       R      V  +M+  G+ P    + ++I G  +  
Sbjct: 414 EMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKG 473

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L   F  + +M   G  PD   Y+ LI    + +   +A  + +EM    + P+  TY 
Sbjct: 474 ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYT 533

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L+NA    G L+    +  +M   G   D   Y+ LI    NK  R  +    + +L+ 
Sbjct: 534 TLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLING-LNKQARTREAKRLLFKLIY 592

Query: 211 QSKGWSSV 218
           +    S V
Sbjct: 593 EESVPSDV 600



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 53/127 (41%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
            +E   +  A +   Y+T+++    +        +  +M+  GV P    + SLI G  +
Sbjct: 447 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 506

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             RL +      +M   G  PD   Y  LI+      + ++A+ + +EM      P+  T
Sbjct: 507 MRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVT 566

Query: 149 YVCLLNA 155
           Y  L+N 
Sbjct: 567 YSVLING 573



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 12/238 (5%)

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQ--AIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           K++GF+P V  YN ++    + + S +  A  ++ EM +  V PN  TY  L+    + G
Sbjct: 169 KSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVG 228

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           +L        +M   G   +   Y  LI A+  K+ R D+    +  +   SKG      
Sbjct: 229 ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC-KMGRIDEAFGLLKSM--SSKGMQPNLI 285

Query: 221 SGNNAENEMM--GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
           S N   N +   G  KE    L    Y     GF    +T   +    C E    QA+  
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGY----KGFTPDEVTYNTLLNGYCKEGNFHQALVI 341

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             EM+ ++  SP V      I     + +++   + F+        P    Y TL++G
Sbjct: 342 HAEMV-RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDG 398


>gi|298708556|emb|CBJ30641.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 520

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 35  RNYANNASEYNTVVTSLTSQR--RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           R Y  +AS    V T+    R  ++    ++ + M +DGV+ T   + +L+  T +G R 
Sbjct: 213 RKYGPSASASVYVATAQACARAGKWEEATNLMEMMKVDGVRATEKFYMALLRATGEGGRT 272

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
             T  F ++MK  G  P V  YN  +  CGK  + + A+++  EM +  ++P G      
Sbjct: 273 DKTLDFFEEMKEIGLKPGVRSYNCAVGACGKAGSWEGAMKLLTEMHEEGMRPAGFAVAAT 332

Query: 153 LNACAAAGQLDPVYAIVR----------DMTAAGAGLDKFCYAG 186
           + AC++AG+      ++R          D  + GA ++  C AG
Sbjct: 333 IRACSSAGEWRKGLEVLRQSQQVKPSKPDPCSLGAAVEMCCRAG 376



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  +  +L +  ++ LL ++ ++M  DG  PT   F + +    K    + +      M+
Sbjct: 119 FGAMANALGTAGKWPLLLELLEEMKADGNPPTDVAFKAAVDCCSKAGEWRHSVALIKAMR 178

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G+ P V   + +IS CG+    + A+ +  E +KY    +   YV    ACA AG+ +
Sbjct: 179 AAGYPPTVLSLSSVISACGRGGRWEVALALLHETRKYGPSASASVYVATAQACARAGKWE 238

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201
               ++  M   G    +  Y  L+ A T +  R D T
Sbjct: 239 EATNLMEMMKVDGVRATEKFYMALLRA-TGEGGRTDKT 275



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%)

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           +  + ++     + MK +G       Y  L+   G+   +D+ +  FEEMK+  +KP  +
Sbjct: 233 RAGKWEEATNLMEMMKVDGVRATEKFYMALLRATGEGGRTDKTLDFFEEMKEIGLKPGVR 292

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           +Y C + AC  AG  +    ++ +M   G     F  A  I A ++
Sbjct: 293 SYNCAVGACGKAGSWEGAMKLLTEMHEEGMRPAGFAVAATIRACSS 338


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 122/313 (38%), Gaps = 47/313 (15%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE  R+ Y +    YNT+++ L   RR     D+Y ++M  G  PT   +  L+ G +K 
Sbjct: 893  EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 952

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             R++D     ++M   G   +  +YN L++      N+++   +F++M    + P+ ++Y
Sbjct: 953  GRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSY 1012

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              +++    AGQL+      R +   G   D   Y  LI     K  R ++  +      
Sbjct: 1013 TIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDG-LGKSKRLEEAVSLF---- 1067

Query: 210  EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
                             NEM                  ++ G +  L T   +  H    
Sbjct: 1068 -----------------NEM------------------QKKGIVPNLYTYNSLILHLGKA 1092

Query: 270  LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA-- 327
             K  +A +   E+L K  K P+V+     IR Y  SG  D+ +  +   I     P +  
Sbjct: 1093 GKAAEAGKMYEELLTKGWK-PNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151

Query: 328  ----ELYATLVEG 336
                EL  T ++G
Sbjct: 1152 CHIHELMKTFLKG 1164



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN +V  L          +VY  MM+DGV P+   +  L+V   K   ++   +  
Sbjct: 238 NAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLL 297

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+A+G  P+V  Y   I V G+ +  D+A RI  EM+    KP+  T+  L+     A
Sbjct: 298 REMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDA 357

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G++     +   M  +    D+  Y  L+    +     +  +  ++E+      W++++
Sbjct: 358 GRISDAKDVFWKMKKSDQKPDRVTYITLLDKFAD-----NGESQSVMEI------WNAMK 406

Query: 220 TSGNN 224
             G N
Sbjct: 407 ADGYN 411



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 1/176 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y  V+ +L    R F   +++D+M   G+ P +  ++SLI G +K  R  D  
Sbjct: 410 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDAL 469

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M  +G  P+   +   I+  GK   S +AI+ +E MK   + P+      +L   
Sbjct: 470 ELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 529

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           A +G+L     +  ++ A G   D   Y  +I    +K  + D+      +++E +
Sbjct: 530 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKC-CSKASKFDEAVKIFYDMIENN 584



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 57/128 (44%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L    R  + + V+ ++   GV P    +  +I    K S+  +       M  
Sbjct: 523 NAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIE 582

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N  +PDV V N LI    K    D+A +IF ++K+  ++P   TY  LL      G++  
Sbjct: 583 NNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKE 642

Query: 165 VYAIVRDM 172
           V  ++ +M
Sbjct: 643 VMHLLEEM 650



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M  DG       + ++I    +  R+ +     D+MK  G +P+   YN LIS  
Sbjct: 400 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 459

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            K      A+ +F+ M  +  KPNG T+V  +N    +G+
Sbjct: 460 LKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGE 499



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 58/145 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++   +   +F     ++ DM+ +   P   + +SLI    K  R  + +    Q+K
Sbjct: 557 YTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLK 616

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P    YN L++  G+     + + + EEM      PN  TY  +L+     G ++
Sbjct: 617 EMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVN 676

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++  MT  G   D   Y  +I
Sbjct: 677 DALDMLYSMTTKGCIPDLSSYNTVI 701



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 56/296 (18%), Positives = 113/296 (38%), Gaps = 12/296 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  ++  L    R    +DV+  M     +P R  + +L+         Q      + MK
Sbjct: 347 HTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMK 406

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G+  +V  Y  +I    +     +A+ +F+EMK+  + P   +Y  L++    A +  
Sbjct: 407 ADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFG 466

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE--QSKGWSSVETS 221
               + + M   G   + + +   I  +          + K I+  E  +SKG      +
Sbjct: 467 DALELFKYMDIHGPKPNGYTHVLFINYYGK-----SGESIKAIQRYELMKSKGIVPDVVA 521

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLL 280
           GN     + G++K     +    +   +   +S     Y +    C++     +A++   
Sbjct: 522 GNAV---LFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFY 578

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +M++ +   PDV +V   I     +G  D   ++F         P    Y TL+ G
Sbjct: 579 DMIENN-CVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAG 633



 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 43  EYNTVVTSLTSQRRFFLLRD----VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +Y T+ T L S  +  L+++    + +  +  G +  R   HSL+ G +K +  + +  F
Sbjct: 727 DYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEF 786

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            + + ++G   D      LI    K K + +A  + ++ K + V     +Y  L+     
Sbjct: 787 AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVD 846

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +D    +  +M   G G D+F Y  L+ A
Sbjct: 847 ENLIDIAEGLFAEMKELGCGPDEFTYNLLLDA 878


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 134/332 (40%), Gaps = 26/332 (7%)

Query: 16  GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G LG+  RF       EE +R     N   +NT++     +     +  V + M   GV+
Sbjct: 399 GMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVE 458

Query: 74  PTRDLFHSLIVGTMK-GSRLQDTFFFR--DQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
            +RD +++LI    + GSR   T+ F+  D+M ++GF P +  YN L++V  +  +   A
Sbjct: 459 LSRDTYNTLISAYGRCGSR---TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLIT 189
             I  +M K   KPN Q+Y  LL   A  G             AAG   ++K  Y G I 
Sbjct: 516 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN------------AAGIESIEKEVYVGTIF 563

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGV-SKEELYNLPTAE 244
                +        K   L    K +  V+  G   +    N M+ + +K  LY+  T  
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
           +   +   LS  L  Y+      A+  +    E +L+ LK  +  PDV      I  +  
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 683

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            G I    ++  + I     P    Y TLV G
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGG 715



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 68/384 (17%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN +  +      F       D M   G+ P    +++++       R+ +     
Sbjct: 320 DAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALF 379

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+MK NG++P+V  YN +  + GK       + + EEM +    PN  T+  +L  C   
Sbjct: 380 DRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKR 439

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G  D V  ++  M + G  L +  Y  LI+A+                      G     
Sbjct: 440 GMEDYVTRVLNGMKSCGVELSRDTYNTLISAY----------------------GRCGSR 477

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T      +EM+                    GF +  LT Y+   +  +   D    +++
Sbjct: 478 TYAFKMYDEMIS------------------SGF-TPCLTTYNALLNVLSRQGDWSTAQSI 518

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV----- 334
           +  + K+   P+       ++CY   G+      + ++      FP   +  TLV     
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578

Query: 335 ----EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
               EG    +     Q  +  LV  NS              ++A   K+G Y+ A  ++
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNS--------------MLAMYAKNGLYSKATEMF 624

Query: 391 DLMQARKITPSLPAVEAYYNGLKD 414
           D ++   ++P L      YN L D
Sbjct: 625 DSIKQSGLSPDL----ITYNSLMD 644



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M   GV+P      ++I    +   L     F + +KA G +P V  YN L+ V GK 
Sbjct: 240 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 299

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            N  +A+R+ +EM+    +P+  TY  L    A AG  +     +  MT+ G   + F Y
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 359

Query: 185 AGLITAHTNKIPRADD 200
             ++TA+ N + R D+
Sbjct: 360 NTVMTAYAN-VGRVDE 374



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 32  YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGS 90
           +A    A +A+    VV +L  + +  ++ D+ D+M L  G +     + +++    +  
Sbjct: 135 WASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAG 194

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTY 149
           R +       +++  G +P +  YN ++ V G+   S  + + + EEM+   V+P+  T 
Sbjct: 195 RYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTA 254

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             ++ AC   G LD   A   D+ A G
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARG 281


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 125/312 (40%), Gaps = 16/312 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R++   +   +N ++ SL    +    RDV+D M + G  P    ++ ++ G    
Sbjct: 313 KEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  P +  +N LI     C   D+A+ IF EM+ + VKPN  TY
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTY 432

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++ A    G++D        M   G   DK+ Y  LI        + +A +    I E
Sbjct: 433 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL---ISE 489

Query: 208 LVEQSKGWSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           ++        V  S   NN       +  + +++L     +H      S L+  Y     
Sbjct: 490 IMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY----- 544

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
            C   K  +A+     M+    +  D VY  + N  C +  G ID G  +F + +     
Sbjct: 545 -CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKI--GRIDEGLSLFREMLQKGIK 601

Query: 325 PPAELYATLVEG 336
           P   LY  +++G
Sbjct: 602 PSTILYNIIIDG 613



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+     +       D++ +M+  G+ P    + S++    K   +     F  QM 
Sbjct: 222 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV 281

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LP+   YN LI          +A+R+F+EM++  + P+  T+  L+ +    G++ 
Sbjct: 282 NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIK 341

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               +   M   G   D F Y  ++  +  K
Sbjct: 342 EARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +++++ +L    R    ++++D  +  G+ PT  ++  L+ G     +++      D M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+  VY  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 621

Query: 164 PVYAIVRDMTAAGAGLDKFCYA 185
           P      +MT +G  ++K  Y+
Sbjct: 622 PAKVKFHEMTESGIAMNKCTYS 643



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 65/164 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y++VV +L   R           M+  GV P    +++LI G    
Sbjct: 243 KEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSST 302

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + ++      +M+    LPDV  +N L+    K     +A  +F+ M      P+  +Y
Sbjct: 303 GQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 362

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +LN  A  G L  +  +   M   G       +  LI A+ N
Sbjct: 363 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYAN 406



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PDV  YN +I    K  + ++A  +F+EM +  + P+  TY  +++A   A  +D   A 
Sbjct: 217 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTN 193
           +R M   G   + + Y  LI  +++
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSS 301


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 134/332 (40%), Gaps = 26/332 (7%)

Query: 16  GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G LG+  RF       EE +R     N   +NT++     +     +  V + M   GV+
Sbjct: 399 GMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVE 458

Query: 74  PTRDLFHSLIVGTMK-GSRLQDTFFFR--DQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
            +RD +++LI    + GSR   T+ F+  D+M ++GF P +  YN L++V  +  +   A
Sbjct: 459 LSRDTYNTLISAYGRCGSR---TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLIT 189
             I  +M K   KPN Q+Y  LL   A  G             AAG   ++K  Y G I 
Sbjct: 516 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN------------AAGIESIEKEVYVGTIF 563

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGV-SKEELYNLPTAE 244
                +        K   L    K +  V+  G   +    N M+ + +K  LY+  T  
Sbjct: 564 PSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
           +   +   LS  L  Y+      A+  +    E +L+ LK  +  PDV      I  +  
Sbjct: 624 FDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCK 683

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            G I    ++  + I     P    Y TLV G
Sbjct: 684 QGLIKEAQRILSEMIADGMAPCVVTYHTLVGG 715



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 68/384 (17%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN +  +      F       D M   G+ P    +++++       R+ +     
Sbjct: 320 DAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALF 379

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+MK NG++P+V  YN +  + GK       + + EEM +    PN  T+  +L  C   
Sbjct: 380 DRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKR 439

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G  D V  ++  M + G  L +  Y  LI+A+                      G     
Sbjct: 440 GMEDYVTRVLNGMKSCGVELSRDTYNTLISAY----------------------GRCGSR 477

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T      +EM+                    GF +  LT Y+   +  +   D    +++
Sbjct: 478 TYAFKMYDEMIS------------------SGF-TPCLTTYNALLNVLSRQGDWSTAQSI 518

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV----- 334
           +  + K+   P+       ++CY   G+      + ++      FP   +  TLV     
Sbjct: 519 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 578

Query: 335 ----EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
               EG    +     Q  +  LV  NS              ++A   K+G Y+ A  ++
Sbjct: 579 CRRLEGVEKAFQEVKAQGYKPDLVIFNS--------------MLAMYAKNGLYSKATEMF 624

Query: 391 DLMQARKITPSLPAVEAYYNGLKD 414
           D ++   ++P L      YN L D
Sbjct: 625 DSIKQSGLSPDL----ITYNSLMD 644



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M   GV+P      ++I    +   L     F + +KA G +P V  YN L+ V GK 
Sbjct: 240 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 299

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            N  +A+R+ +EM+    +P+  TY  L    A AG  +     +  MT+ G   + F Y
Sbjct: 300 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 359

Query: 185 AGLITAHTNKIPRADD 200
             ++TA+ N + R D+
Sbjct: 360 NTVMTAYAN-VGRVDE 374



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 32  YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGS 90
           +A    A +A+    VV +L  + +  ++ D+ D+M L  G +     + +++    +  
Sbjct: 135 WASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAG 194

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTY 149
           R +       +++  G +P +  YN ++ V G+   S  + + + EEM+   V+P+  T 
Sbjct: 195 RYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTA 254

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             ++ AC   G LD   A   D+ A G
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARG 281


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 4/136 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAGA 177
           +     ++++M   G 
Sbjct: 397 VWTGSKLLKEMQRDGC 412


>gi|298715780|emb|CBJ28258.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1641

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 111/263 (42%), Gaps = 24/263 (9%)

Query: 31   EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
            E   R  + +   YNT +    S   +     + + M  DGV      F+++I     G+
Sbjct: 1176 EMWAREVSRDVQTYNTAMALCKSAGEWTRAVGLLEAMEADGVAADTVTFNTVIAACEAGA 1235

Query: 91   RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
                 F   +QM+  G  PD+  YN L +V G C   ++A+ + ++M+   ++P+  TY 
Sbjct: 1236 DHWTAFSLFNQMERAGLTPDLWTYNSLANVLGSCGEWERAVALLDDMRARGLRPDVITYS 1295

Query: 151  CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             L++AC  AGQ++   +++ +M   G   ++  ++  I + ++    +  +++      +
Sbjct: 1296 ALVSACEKAGQVEASLSLLEEMAREGVDANERTFSAAIKSISSASSFSSSSSSSSSSETK 1355

Query: 211  QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
             S  W  V                 +L+     E   RRG      +  Y  A  ACA+ 
Sbjct: 1356 PSASWQKV----------------AKLH-----EEARRRG---KANVVTYSAAISACAKE 1391

Query: 271  KDVQAMETLLEMLKKDRKSPDVY 293
            K  +    LL  +++D   P+ Y
Sbjct: 1392 KRWRDALALLAEMRRDGIEPNDY 1414



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 50/113 (44%)

Query: 75   TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
            T  +F++ I+   +  +L++  F   +M A     DV  YN  +++C       +A+ + 
Sbjct: 1150 TTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTYNTAMALCKSAGEWTRAVGLL 1209

Query: 135  EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
            E M+   V  +  T+  ++ AC A       +++   M  AG   D + Y  L
Sbjct: 1210 EAMEADGVAADTVTFNTVIAACEAGADHWTAFSLFNQMERAGLTPDLWTYNSL 1262



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 100/274 (36%), Gaps = 33/274 (12%)

Query: 99   RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            R + KAN     V  Y+  IS C K K    A+ +  EM++  ++PN  ++   + AC  
Sbjct: 1371 RRRGKAN-----VVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVN 1425

Query: 159  AGQLD---PVYAIVRDMTAAG-----------AGLDKFCYAGLITA--HTNKIPRADDTA 202
            A +      ++A + D+  A             G D      L  A  H   +   DD  
Sbjct: 1426 ADEGKRALQLFATIMDVAPAATSSTTTTSRAIGGADTHTVDSLSAAVPHAGSLCDGDDND 1485

Query: 203  TKIIELVEQSKGWSSVETS---------GNNAENEMMGVS---KEELYNLPTAEYVHRRG 250
            +      + S     V  +           + +  M  +S   KEE +    A   H R 
Sbjct: 1486 SSSPRNEDGSDARGVVAAAASAAPGRGVARSRDCYMAAISACHKEEDFPRALALLKHMRR 1545

Query: 251  GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
              +   L +Y++    C    D +  + LL +++ DR SP V    Q IR    +G  ++
Sbjct: 1546 KGVRGSLGLYNLVLSMCERHGDAETSKKLLTLMRMDRVSPSVVSCNQVIRACEKAGRWED 1605

Query: 311  GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
               +    +     P      + +     G++P+
Sbjct: 1606 ALAILMAMVSGGISPNVYTVCSALRACCIGHSPQ 1639



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  PDV VY   IS C      ++A+ +  EM++  +KPN  T    ++A A  G+ +
Sbjct: 666 GVSPDVYVYTAAISACSTAGRWEEALDLEGEMRRRGIKPNAYTVTSCVSALARGGEWE 723



 Score = 38.5 bits (88), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/105 (20%), Positives = 47/105 (44%)

Query: 72   VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
            V  +RD + + I    K             M+  G    + +YN ++S+C +  +++ + 
Sbjct: 1513 VARSRDCYMAAISACHKEEDFPRALALLKHMRRKGVRGSLGLYNLVLSMCERHGDAETSK 1572

Query: 132  RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            ++   M+   V P+  +   ++ AC  AG+ +   AI+  M + G
Sbjct: 1573 KLLTLMRMDRVSPSVVSCNQVIRACEKAGRWEDALAILMAMVSGG 1617


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YNT+V +            + D M   G++P    F+S++ G  K  R++D     
Sbjct: 191 NAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVF 250

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G  PD   YN L+    K   S +A+ +F EM +  + P+  T+  L++    A
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKA 310

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G L+    +VR+M   G  +++  +  LI     K
Sbjct: 311 GNLERAVGLVREMRERGLQMNEITFTALIDGFCKK 345



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 3/175 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N+VV  +    R    R V+D+M+ +G+ P    +++L+ G  K     +     
Sbjct: 226 NLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVF 285

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G +PDV  +  LI V  K  N ++A+ +  EM++  ++ N  T+  L++     
Sbjct: 286 AEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKK 345

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           G LD     VR+M          CY  LI  +   + R D+    + E+  ++KG
Sbjct: 346 GFLDDALLAVREMRQCRIQPSVVCYNALINGYC-MVGRMDEARELVREM--EAKG 397



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y++++  L  ++R      ++ +M+  G+QP    + SLI G  K   ++      
Sbjct: 436 DAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLH 495

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G LPDV  Y+ LI+   K   + +A R+  ++   E  P    Y  L+  C  A
Sbjct: 496 DEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNA 555

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            +L  V A+          L  FC  GL+
Sbjct: 556 -ELKSVLAL----------LKGFCMKGLM 573



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 62/145 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++       R    R++  +M   GV+P    + +++    K       F    QM 
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQML 429

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG LPD   Y+ LI V  + K    A  +F+ M    ++P+  TY  L++     G ++
Sbjct: 430 ENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVE 489

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
              ++  +M  AG   D   Y+ LI
Sbjct: 490 RALSLHDEMVKAGVLPDVVTYSVLI 514



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--Q 129
           +QP+   +++LI G     R+ +      +M+A G  PDV  Y+ ++S    CKN D   
Sbjct: 363 IQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILS--AYCKNGDTHS 420

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A ++ ++M +  V P+  TY  L+       +L   + + ++M + G   D+  Y  LI 
Sbjct: 421 AFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLID 480

Query: 190 AHTNK 194
            H  +
Sbjct: 481 GHCKE 485



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
            RRFF      +       A N   YN +V +L  +        V  DM   G  P    
Sbjct: 141 ARRFF------DSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVT 194

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +++L+    +   +       D M+  G  P++  +N +++   K    + A ++F+EM 
Sbjct: 195 YNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV 254

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           K  + P+G +Y  L+      G      ++  +MT  G   D   +  LI
Sbjct: 255 KEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLI 304



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 49/118 (41%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+Q     F +LI G  K   L D      +M+     P V  YN LI+        D+A
Sbjct: 327 GLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEA 386

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +  EM+   VKP+  TY  +L+A    G     + + + M   G   D   Y+ LI
Sbjct: 387 RELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK- 125
           M+ +GV P    + SLI    +  RL D       M + G  PD   Y  LI   G CK 
Sbjct: 428 MLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLID--GHCKE 485

Query: 126 -NSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            N ++A+ + +EM K  V P+  TY  L+N 
Sbjct: 486 GNVERALSLHDEMVKAGVLPDVVTYSVLING 516



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQ 129
           G  P+   ++++++     S      FF D M ++G  P+V  YN L+ ++CG+  +  +
Sbjct: 118 GYAPSVLAYNAVLLALSDASLPSARRFF-DSMLSDGVAPNVYTYNILVRALCGR-GHRKE 175

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           A+ +  +M+     PN  TY  L+ A   AG++D    +V  M   G
Sbjct: 176 ALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGG 222


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 65/130 (50%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++D+M+ +GVQP R  F+SL+    +G   +       +M   G   D+  YN L+   
Sbjct: 277 EIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAV 336

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    D A +I  EM +  + PN  TY  +++  A AG+LD    +  +M  A  GLD+
Sbjct: 337 CKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDR 396

Query: 182 FCYAGLITAH 191
             Y  L++ +
Sbjct: 397 VSYNTLLSIY 406



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           GG +   F + S    E  R++   N   Y+TV+       R     +++++M    +  
Sbjct: 339 GGQMDLAFQIMS----EMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGL 394

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
            R  +++L+    K  R ++      +M+++G   D   YN L+   GK    ++  R+F
Sbjct: 395 DRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVF 454

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           EEMK   + PN  TY  L++  +  G       + R+   AG   D   Y+ LI A
Sbjct: 455 EEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDA 510



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           L ++V++  + +G   T   F +LI    +     +     + MK++G  P++  YN +I
Sbjct: 203 LAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVI 262

Query: 119 SVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
             CGK   + ++A  IF+EM +  V+P+  T+  LL  C   G  +    +  +M   G 
Sbjct: 263 DACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGI 322

Query: 178 GLDKFCYAGLITA 190
             D F Y  L+ A
Sbjct: 323 EQDIFTYNTLLDA 335



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 62/128 (48%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R+++ +M+  G++     +++L+    KG ++   F    +M     +P+V  Y+ +I  
Sbjct: 311 RNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDG 370

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+A+ +F EMK   +  +  +Y  LL+  A  G+ +    + ++M ++G   D
Sbjct: 371 YAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKD 430

Query: 181 KFCYAGLI 188
              Y  L+
Sbjct: 431 AVTYNALL 438



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++      RF    +V  +M   G++     +++L+ G  K  + ++     ++MK
Sbjct: 399 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 458

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A    P++  Y+ LI V  K     +A+ +F E KK  +K +   Y  L++A    G ++
Sbjct: 459 AERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVE 518

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              + + +MT  G   +   Y  +I A
Sbjct: 519 SAVSFLDEMTKEGIRPNVVTYNSIIDA 545



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN ++     Q ++  ++ V+++M  + + P    + +LI    KG   Q+     
Sbjct: 430 DAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF 489

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            + K  G   DV +Y+ LI     CKN   + A+   +EM K  ++PN  TY  +++A  
Sbjct: 490 REFKKAGLKADVVLYSALIDAL--CKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFG 547

Query: 158 AAGQ----LDPVY 166
            +G     +DP Y
Sbjct: 548 RSGSAECVIDPPY 560



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++    +  L   +  +M    + P    + ++I G  K  RL +     ++MK
Sbjct: 329 YNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK 388

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 D   YN L+S+  K    ++A+ + +EM+   +K +  TY  LL      G+ +
Sbjct: 389 FASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYE 448

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  +  +M A     +   Y+ LI  ++
Sbjct: 449 EVKRVFEEMKAERIFPNLLTYSTLIDVYS 477


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        +M 
Sbjct: 197 YSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRML 256

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CKN D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 257 SQSLLPDLITYNTLIY--GLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 314

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 315 LDTAFKHRKRMIQENIRLDDVAYTALISG 343



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 24/326 (7%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           R F +     EE     Y  +   +N ++          + + V+D +   G++P+   +
Sbjct: 103 RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 162

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM 137
           ++L+ G ++   L + F  +  M ANG  PDV  Y+ LI+  G CK S  D A  +F+EM
Sbjct: 163 NTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLIN--GLCKESKMDDANELFDEM 220

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKI 195
               + PNG T+  L++     G++D    I + M +     D   Y  LI        +
Sbjct: 221 LVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDL 280

Query: 196 PRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
            +A D   ++       KG    + +     +   G  KE   +L TA + HR+   +  
Sbjct: 281 KQAHDLIDEM-----SMKGLKPDKFTYTTLID---GCCKEG--DLDTA-FKHRK-RMIQE 328

Query: 256 LLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
            + +  VA+ A     C E + V A + L EML    K PD+      I  +   GD+  
Sbjct: 329 NIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLK-PDIGTYTMIINEFCKKGDVWK 387

Query: 311 GHKVFEDYICSEKFPPAELYATLVEG 336
           G K+ ++   +   P    Y  L+ G
Sbjct: 388 GSKLLKEMQRNGHAPSVVTYNVLMNG 413


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 169/431 (39%), Gaps = 68/431 (15%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRR----FFLLRDVYDDMMLDGVQ 73
           +G RFF      +E  R     N   YNT++      +R    F  LR     M L G++
Sbjct: 1   MGLRFF------KEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRS----MGLKGLE 50

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAI 131
           P    F+ +I G  +  RL++T     +M   G++PD   YN L++  G CK  N  QA+
Sbjct: 51  PNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVN--GYCKEGNFHQAL 108

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +  EM +  + PN  TY  L+N+   AG L+        M   G   ++  Y  +I   
Sbjct: 109 VLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGF 168

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
             +     D A +++                    NEM                   R G
Sbjct: 169 AQQ--GLLDEAYRVL--------------------NEM------------------TRSG 188

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
           F+  ++T   +    C   +  +A+  L +M+ K    PDV      I  +  + ++D  
Sbjct: 189 FIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG-VLPDVVSYSTIISGFARNQELDRA 247

Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDL 371
            ++  + I     P A  Y++L++G       + +  A D    M +  I L P   +  
Sbjct: 248 FQMKVEMIGKSVLPDAVTYSSLIQGLC---EQRRLTEACDMFQEMLT--IKLPPDEFTYT 302

Query: 372 LLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAY 431
            L+ A  K G    A ++ D M  +   P         NGL +++  + + R +++   Y
Sbjct: 303 TLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGL-NKQARSKEARRLLLKLFY 361

Query: 432 DNLLRGRPGAV 442
           D+ +   P AV
Sbjct: 362 DDSI---PSAV 369



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y++++  L  QRR     D++ +M+   + P    + +LI    K   L       
Sbjct: 262 DAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLH 321

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   GFLPD   YN LI+   K   S +A R+  ++   +  P+  TY  L+  C   
Sbjct: 322 DEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNI 381

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                      +  +A A +  FC  GL+
Sbjct: 382 -----------EFKSAVALVKGFCMKGLM 399


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 7/251 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   YN +V    ++ +      + + M + GV P    ++ LI G      ++ 
Sbjct: 211 RGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIES 270

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            F     M+ +G + D   YN LI+   K   +DQA  +F+ ++   +KPN  T+  L+N
Sbjct: 271 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 330

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               +G++D  +  +  M +AG   D + Y+  I  H  K+  + +  + I E++++   
Sbjct: 331 GLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFI-EHLCKMKGSQEGLSFIGEMLQK--- 386

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDV 273
              V+ S  N    +  + KE  Y L    +        +  +  Y  +  A C E +  
Sbjct: 387 --DVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLN 444

Query: 274 QAMETLLEMLK 284
           +A   L+EM K
Sbjct: 445 EAENVLMEMSK 455



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+ SL  +            M+  G +P    F+SLIVG  + +++       D+M 
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 73

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF  DV  Y  LI   G C+    D+A+ +F EM     +P+   Y  L+     AG+
Sbjct: 74  LRGFAQDVVSYAALIE--GFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGR 127

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            +    ++R M   G       YA ++
Sbjct: 128 GEEGLLMLRRMKELGWRPSTRAYAAVV 154



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 4/161 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRL 92
           R    NA  +N+++  L    +  +     + M+  G  P    + S I  +  MKGS  
Sbjct: 316 RGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS-- 373

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           Q+   F  +M      P    Y  +I    K +N     R + EM      P+  TY   
Sbjct: 374 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 433

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           + A    G+L+    ++ +M+  G  +D   Y  L+  H +
Sbjct: 434 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS 474



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 49/123 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +++   +   Y  V+  L  +R + L+   + +M+  G  P    + + +       
Sbjct: 382 EMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEG 441

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL +      +M  NG   D   YN L+        +D A+ I ++M      PN  TY 
Sbjct: 442 RLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYF 501

Query: 151 CLL 153
            LL
Sbjct: 502 ILL 504



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 28  GAEEYARRNYANNASEYNTVVTSLTSQRRFF-LLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           G     + ++A +  +  T V S+ +Q  +F LLR +    +++ V P          G 
Sbjct: 471 GHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTP------AGV 524

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   L D F   D MK N FLP+   Y+ ++    +   +++A  +   MK+  +  N 
Sbjct: 525 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 584

Query: 147 QTYVCLLNA-CAAAGQLDPVYAIVRDMTAAG 176
             Y  L+   C +   LD  + +V  M   G
Sbjct: 585 DIYTALVTCFCKSKRYLD-AWVLVCSMIQHG 614



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 4/160 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +A +   Y  ++       R     +++ +M     QP   ++ +L+ G  K  R ++
Sbjct: 75  RGFAQDVVSYAALIEGFCETGRIDEAVELFGEM----DQPDMHMYAALVKGLCKAGRGEE 130

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +MK  G+ P    Y  ++      + + +A  + +EM +  + P   T   ++N
Sbjct: 131 GLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVIN 190

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           A    G++     ++  M   G   + + Y  L+    N+
Sbjct: 191 AYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNE 230


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 134/314 (42%), Gaps = 20/314 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 129 EESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 188

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M+A+G  PDV  Y+ LI+  G CK S  D    +F+EM    + PNG 
Sbjct: 189 GDLNEXFRLKKAMQASGVQPDVYTYSVLIN--GLCKESKMDDXNELFDEMLDXGLVPNGV 246

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEM 306

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L TA EY  R      RL  V + A 
Sbjct: 307 -----SMKGLKPDKITYTTLID---GSCKEG--DLETAFEYRXRMIKENIRLDDVAYTAL 356

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
            +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++     
Sbjct: 357 ISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 415

Query: 323 KFPPAELYATLVEG 336
             P    Y  L+ G
Sbjct: 416 YVPSVVTYNVLMNG 429


>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 484

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   ++ + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVISRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 NREITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGYGIKANAITYSTLLPGLCN 267



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R    +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKNREITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   ++ D     ++MK  G   +   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGYGIKANAITYSTLLPGLCNAEKMSEARSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L++    AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPTDNSIFMRLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 484

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + RF + +  ++ M+  G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVIMRRGRFMMAKRYFNKMLSXGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGYGIKPNAITYSTLLPGLCN 267



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+++   AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPTDNSIFMRLISSQCKAGNLDAAADVLKSMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 18/299 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++              ++ +M   GV+PT   F SLI G  K  ++Q  F   ++M 
Sbjct: 438 YNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMI 497

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+V  +  LIS         +A  +F+E+ + ++KP   TY  L+      G++D
Sbjct: 498 DNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKID 557

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA----DDTATKIIELVEQSKGWSS 217
             + ++ DM   G   D + Y  LI+    T ++ +A    DD   + ++L E      S
Sbjct: 558 KAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMC---YS 614

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
               G   E  +M    E L    + E + R    ++  L  + V      +  D +   
Sbjct: 615 ALLHGYCQEGRLM----EALS--ASCEMIQRG---INMDLVCHAVLIDGALKQPDRKTFF 665

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            LL+ +      PD  I    I  Y   G      + ++  +  E FP    Y  L+ G
Sbjct: 666 DLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNG 724



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 146/346 (42%), Gaps = 25/346 (7%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +  A +   Y T+V      ++F     + D+M+  G  PT      L+ G  K  ++ D
Sbjct: 289 KGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDD 348

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +    ++   GF+P++ VYN LI+   K  + D+A  ++  M    ++PNG TY  L++
Sbjct: 349 AYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILID 408

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +   +G+LD   +    M   G G   + Y  LI     +    D +A + + +   +KG
Sbjct: 409 SFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLING---QCKFGDLSAAESLFIEMTNKG 465

Query: 215 WSSVETSGNNAENEMMGVSKE-------ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
              VE +     + + G  K+       +LYN           G    + T   +    C
Sbjct: 466 ---VEPTATTFTSLISGYCKDLQVQKAFKLYNKMI------DNGITPNVYTFTALISGLC 516

Query: 268 AELKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
           +  K  +A E   E++++  K  +V Y V+  I  Y   G ID   ++ ED       P 
Sbjct: 517 STNKMAEASELFDELVERKIKPTEVTYNVL--IEGYCRDGKIDKAFELLEDMHQKGLVPD 574

Query: 327 AELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLL 372
              Y  L+ G     +   +  A+D + +++ +N+ L+    S LL
Sbjct: 575 TYTYRPLISGLC---STGRVSKAKDFIDDLHKQNVKLNEMCYSALL 617



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +  +++ L S  +     +++D+++   ++PT   ++ LI G  +  ++   F   
Sbjct: 504 NVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELL 563

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + M   G +PD   Y  LIS         +A    +++ K  VK N   Y  LL+     
Sbjct: 564 EDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQE 623

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L    +   +M   G  +D  C+A LI
Sbjct: 624 GRLMEALSASCEMIQRGINMDLVCHAVLI 652



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 54  QRRFF-LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112
           ++ FF LL+D++D     G++P   ++ S+I    K    +  F   D M      P+V 
Sbjct: 661 RKTFFDLLKDMHDQ----GLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVV 716

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            Y  L++   K    D+A  +F+ M+   V PN  TY C L+     G +
Sbjct: 717 TYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNM 766



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 47/109 (43%)

Query: 68  MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
           ML G+       + +I G  K  R  +      +M  NG  PD   Y+ LI    +  N 
Sbjct: 776 MLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNV 835

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
             ++++++ M    ++P+   Y  L+  C   G+LD  + +  DM   G
Sbjct: 836 GASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRG 884



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 60/159 (37%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  ++N   N   Y+ ++     + R         +M+  G+         LI G +K 
Sbjct: 599 DDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQ 658

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +  F     M   G  PD  +Y  +I    K  +  +A   ++ M   E  PN  TY
Sbjct: 659 PDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTY 718

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+N    AG++D    + + M AA    +   Y   +
Sbjct: 719 TALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFL 757


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 144/353 (40%), Gaps = 32/353 (9%)

Query: 3   LLQSIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
           +  +I  ++  +GG  +  R+       +E   R  + N   YN ++ +   + +FF   
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTFFFRDQMKANGFLPDVAVYNYLI 118
           ++YD+M+  G+ P    ++S+I G  K  RL   +D F+    M   G  PDV  +  LI
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL---MATKGCSPDVFTFTTLI 400

Query: 119 -SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
              CG  K  D  + +  EM +  +  N  TY  L++     G L+    + + M ++G 
Sbjct: 401 DGYCGA-KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----------- 226
             D      L+    +     D  A ++ + +++SK         N  E           
Sbjct: 460 CPDIVTCNTLLDGLCDNGKLKD--ALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 517

Query: 227 ---NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
              NE   +  EELY     E  HR  G +   +T   +    C + +  +A +  + M 
Sbjct: 518 GLINEGKFLEAEELYE----EMPHR--GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 571

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            K   SP+V      I  Y  +G +D+G ++F +         A +Y TL+ G
Sbjct: 572 SKSF-SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 69/151 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +       M 
Sbjct: 512 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 571

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +  F P+V  +N LI+   K    D  + +F EM +  +  +   Y+ L+      G ++
Sbjct: 572 SKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 631

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               I ++M ++G   D      ++T   +K
Sbjct: 632 GALDIFQEMISSGVYPDTITIRNMLTGFWSK 662



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRDQM 102
           + T++  L  + R      + D M+ +G+QP +  + + + G  K G  +      R   
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME 244

Query: 103 KANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + +   P+V +Y+ +I  +C   ++SD    +F EM+   + PN  TY C++     +G+
Sbjct: 245 EISHIKPNVVIYSAIIDGLCKDGRHSDSH-NLFIEMQDKGIFPNIVTYNCMIGGFCISGR 303

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
                 ++++M       +   Y  LI A   +
Sbjct: 304 WSAAQRLLQEMLERKISPNVVTYNALINAFVKE 336



 Score = 41.2 bits (95), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 1/161 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L    R     +++ +M   G+ P    ++ +I G     R        
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M      P+V  YN LI+   K     +A  +++EM    + PN  TY  +++     
Sbjct: 312 QEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 371

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +LD    +   M   G   D F +  LI  +     R DD
Sbjct: 372 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA-KRIDD 411


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 144/353 (40%), Gaps = 32/353 (9%)

Query: 3   LLQSIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
           +  +I  ++  +GG  +  R+       +E   R  + N   YN ++ +   + +FF   
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTFFFRDQMKANGFLPDVAVYNYLI 118
           ++YD+M+  G+ P    ++S+I G  K  RL   +D F+    M   G  PDV  +  LI
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL---MATKGCSPDVFTFTTLI 400

Query: 119 -SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
              CG  K  D  + +  EM +  +  N  TY  L++     G L+    + + M ++G 
Sbjct: 401 DGYCGA-KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----------- 226
             D      L+    +     D  A ++ + +++SK         N  E           
Sbjct: 460 CPDIVTCNTLLDGLCDNGKLKD--ALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 517

Query: 227 ---NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
              NE   +  EELY     E  HR  G +   +T   +    C + +  +A +  + M 
Sbjct: 518 GLINEGKFLEAEELYE----EMPHR--GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 571

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            K   SP+V      I  Y  +G +D+G ++F +         A +Y TL+ G
Sbjct: 572 SKSF-SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +       M 
Sbjct: 512 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 571

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +  F P+V  +N LI+   K    D  + +F EM +  +  +   Y+ L+      G ++
Sbjct: 572 SKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 631

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
               I ++M ++G   D      ++T   +K     + A  ++E ++ S G+
Sbjct: 632 GALDIFQEMISSGVYPDTITIRNMLTGFWSK--EELERAVAMLEDLQMSVGY 681



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRDQM 102
           + T++  L  + R      + D M+ +G+QP +  + + + G  K G  +      R   
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME 244

Query: 103 KANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + +   P+V +Y+ +I  +C   ++SD    +F EM+   + PN  TY C++     +G+
Sbjct: 245 EISHIKPNVVIYSAIIDGLCKDGRHSDSH-NLFIEMQDKGIFPNIVTYNCMIGGFCISGR 303

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
                 ++++M       +   Y  LI A   +
Sbjct: 304 WSAAQRLLQEMLERKISPNVVTYNALINAFVKE 336



 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 1/161 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L    R     +++ +M   G+ P    ++ +I G     R        
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLL 311

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M      P+V  YN LI+   K     +A  +++EM    + PN  TY  +++     
Sbjct: 312 QEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 371

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +LD    +   M   G   D F +  LI  +     R DD
Sbjct: 372 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA-KRIDD 411


>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 484

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F  LI G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRXTFXVLIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAIXYSTLLPGLCN 267



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+    + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIXYSTLLPGLCNAEKMSEARSILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+ +   +G LD    +++ M      T A   G  ++ FC AG
Sbjct: 285 YLAPTDNSIFMRLITSQCKSGNLDAASDVLKAMIRLSVPTEAGHYGVLIENFCKAG 340


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 128/329 (38%), Gaps = 20/329 (6%)

Query: 16  GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G LG+  RF       EE +R     N   +NT++     +     +  V + M   GV+
Sbjct: 308 GMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVE 367

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
            +RD +++LI    +       F   D+M ++GF P +  YN L++V  +  +   A  I
Sbjct: 368 LSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 427

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLITAHT 192
             +M K   KPN Q+Y  LL   A  G             AAG   ++K  Y G I    
Sbjct: 428 VSKMLKNGFKPNDQSYSLLLQCYAKGGN------------AAGIESIEKEVYVGTIFPSW 475

Query: 193 NKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGV-SKEELYNLPTAEYVH 247
             +        K   L    K +  V+  G   +    N M+ + +K  LY+  T  +  
Sbjct: 476 VILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDS 535

Query: 248 RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
            +   LS  L  Y+      A+  +    E +L+ LK  +  PDV      I  +   G 
Sbjct: 536 IKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGL 595

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEG 336
           I    ++  + I     P    Y TLV G
Sbjct: 596 IKEAQRILSEMIADGMAPCVVTYHTLVGG 624



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 68/384 (17%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN +  +      F       D M   G+ P    +++++       R+ +     
Sbjct: 229 DAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALF 288

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+MK NG++P+V  YN +  + GK       + + EEM +    PN  T+  +L  C   
Sbjct: 289 DRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKR 348

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G  D V  ++  M + G  L +  Y  LI+A+                      G     
Sbjct: 349 GMEDYVTRVLNGMKSCGVELSRDTYNTLISAY----------------------GRCGSR 386

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T      +EM+                    GF +  LT Y+   +  +   D    +++
Sbjct: 387 TYAFKMYDEMIS------------------SGF-TPCLTTYNALLNVLSRQGDWSTAQSI 427

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV----- 334
           +  + K+   P+       ++CY   G+      + ++      FP   +  TLV     
Sbjct: 428 VSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFK 487

Query: 335 ----EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
               EG    +     Q  +  LV  NS              ++A   K+G Y+ A  ++
Sbjct: 488 CRRLEGVEKAFQEVKAQGYKPDLVIFNS--------------MLAMYAKNGLYSKATEMF 533

Query: 391 DLMQARKITPSLPAVEAYYNGLKD 414
           D ++   ++P L      YN L D
Sbjct: 534 DSIKQSGLSPDLIT----YNSLMD 553



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M   GV+P      ++I    +   L     F + +KA G +P V  YN L+ V GK 
Sbjct: 149 EEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKA 208

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            N  +A+R+ +EM+    +P+  TY  L    A AG  +     +  MT+ G   + F Y
Sbjct: 209 GNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY 268

Query: 185 AGLITAHTNKIPRADD 200
             ++TA+ N + R D+
Sbjct: 269 NTVMTAYAN-VGRVDE 283



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 32  YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGS 90
           +A    A +A+    VV +L  + +  ++ D+ D+M L  G +     + +++    +  
Sbjct: 44  WASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAG 103

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTY 149
           R +       +++  G +P +  YN ++ V G+   S  + + + EEM+   V+P+  T 
Sbjct: 104 RYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTA 163

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             ++ AC   G LD   A   D+ A G
Sbjct: 164 STVIAACGRDGLLDQAVAFFEDLKARG 190


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 64/140 (45%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
             R Y  N   Y++++  L   +R  L+  V   M+ +   P   ++  +I G  K ++ 
Sbjct: 707 VERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            + +     M+  G  P+V  Y  +I   GK    D+ + +F EM      PN  TY  L
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVL 826

Query: 153 LNACAAAGQLDPVYAIVRDM 172
           +N C A G LD  YA++ +M
Sbjct: 827 INHCCATGHLDEAYALLEEM 846



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 142/359 (39%), Gaps = 53/359 (14%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTF 96
           N   Y  +V  L    +    RD+ + M +DG +P   ++ +LI G  K ++L   Q+ F
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703

Query: 97  ---------------------FFRDQ-----------MKANGFLPDVAVYNYLISVCGKC 124
                                 F+D+           M  N   P++ +Y  +I    K 
Sbjct: 704 HKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
             +D+A ++   M++   KPN  TY  +++    AG++D    + R+M + G   +   Y
Sbjct: 764 AKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
             LI  H       D+ A  ++E ++Q+     V +     E    G  +E + +L   E
Sbjct: 824 TVLIN-HCCATGHLDE-AYALLEEMKQTYWPKHVSSYCKVIE----GYKREFILSLGLLE 877

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN-----I 299
            V + G   + LL  Y V             +E  LE+ K+   +       +N     I
Sbjct: 878 EVEKNGSAPTILL--YKVLID---NFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLI 932

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQLAQDTLVNMN 357
             + ++  ID+  ++F D I     P    +  L+ G +      + +QL+ D+L  M+
Sbjct: 933 YSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLS-DSLCQMD 990



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +MM +G  P    +  +I      SR+++ FF   +MK  G +PDV  Y  LI    
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K     QA    +EM +   +P   TY  L++A   A ++     +   M A G   +  
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 183 CYAGLITAH 191
            Y  LI  +
Sbjct: 596 TYTALIDGY 604



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 143/405 (35%), Gaps = 48/405 (11%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           + ++  N   YN +++ L     F    D  + M      P    +  L+ G +   +L 
Sbjct: 301 KEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLG 360

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                   M A G  P   ++N L+    K  +   A ++ ++M+K E KP    Y  L+
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420

Query: 154 NACAAAGQL-DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            +  + G+L  PV         A    ++   AG +    N           ++      
Sbjct: 421 GSICSGGELPGPV-----TFELAEKAYNEMLSAGTVLNKVN-----------VVSFARCL 464

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
            G+   E +     +EMMG                   GF+    T   V    C   + 
Sbjct: 465 CGFGKFEKA-YKVIHEMMG------------------NGFVPDTSTYSEVIGFLCNASR- 504

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           V+    L + +K     PDVY     I C+  +G I   H   ++ +     P    Y T
Sbjct: 505 VENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564

Query: 333 LVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
           L+   +     K + +A +    M ++  F  P + +   L+    KSG    A  I+  
Sbjct: 565 LIHAYL---KAKKVSVANELFELMIAKGCF--PNVITYTALIDGYCKSGNIEKACQIYAR 619

Query: 393 MQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLRG 437
           M+       +P V+ Y+   K +   A+ P +V      D L + 
Sbjct: 620 MRG---DADIPDVDMYF---KIKNNVAEKPNVVTYGALVDGLCKA 658



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D+M+ DG +PT   + +LI   +K  ++       + M A G  P+V  Y  LI    K 
Sbjct: 548 DEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607

Query: 125 KNSDQAIRIFEEMK--------------KYEV--KPNGQTYVCLLNACAAAGQLDPVYAI 168
            N ++A +I+  M+              K  V  KPN  TY  L++    A ++     +
Sbjct: 608 GNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDL 667

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
           +  M   G   +   Y  LI       K+  A +   K++E
Sbjct: 668 LETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVE 708



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    + +L+ G  K  +++D     + M  +G  P+  VY+ LI    K    D+A  
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +F +M +    PN  TY  L++      +LD V  ++  M       +   Y  +I    
Sbjct: 702 VFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDG-L 760

Query: 193 NKIPRADDTATKIIELVEQ 211
           +K+ + D+ A K++ ++E+
Sbjct: 761 SKVAKTDE-AYKLMLMMEE 778


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V++            V + M  +G +P    ++ L  G  +  ++ + F  +D+M+
Sbjct: 277 YNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEME 336

Query: 104 ANG-FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             G  LPDV  YN L   C KC+ S  A+R+ EEM++  VK    T+  ++      G+L
Sbjct: 337 RLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGEL 396

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +     +  M   G   D   Y  LI AH
Sbjct: 397 EGALGCLNKMADDGLAPDVITYNTLIHAH 425



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 9/219 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    + S YNT++  L+   R     D  +++M  G+ P    ++ +I    K 
Sbjct: 509 DEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKE 568

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L++ F F ++M  N F PDV   N L++  G C N   D+A+++FE   +   K +  
Sbjct: 569 GDLENAFQFHNKMVENSFKPDVVTCNTLMN--GLCLNGKLDKALKLFESWVEKGKKVDVI 626

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKI 205
           TY  L+      G +D       DM A G   D F Y  +++A     +   A +   K+
Sbjct: 627 TYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKL 686

Query: 206 IELVEQSKGWSSV---ETSGNNAENEMMGVSKEELYNLP 241
            E    S+ +SS     +S + AE+     ++EE    P
Sbjct: 687 AESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENP 725



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 67/155 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R +  +   Y TV+ +   +        ++D+M+   + P+   +++LI G  +  RL+
Sbjct: 478 QRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLK 537

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     +++   G +PD   YN +I    K  + + A +   +M +   KP+  T   L+
Sbjct: 538 EAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLM 597

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           N     G+LD    +       G  +D   Y  LI
Sbjct: 598 NGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLI 632



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 66/148 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +            + D+M+  G++      ++++    K  R ++         
Sbjct: 418 YNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPP 477

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF+PD   Y  +++   K  NS+ A+R+++EM + ++ P+  TY  L+   +  G+L 
Sbjct: 478 QRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLK 537

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                + ++   G   D   Y  +I A+
Sbjct: 538 EAIDKLNELMEKGLVPDDTTYNIIIHAY 565



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D +  ++   + P    F+ L+        L D       M+  G  PD   YN L++  
Sbjct: 190 DAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAH 249

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            +     +A  +   MKK  V P   TY  L++A A  G +     +V  MTA G   D 
Sbjct: 250 CRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDL 309

Query: 182 FCY----AGLITA 190
           + Y    AGL  A
Sbjct: 310 WTYNVLAAGLCQA 322



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 8/274 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + ++M   GV+ T    + +I G  K   L+      ++M  +G  PDV  YN LI    
Sbjct: 367 LLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHC 426

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  N  +A  + +EM +  +K +  T   +L       + +    +++     G   D+ 
Sbjct: 427 KAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEV 486

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN-EMMGVSKEELYNLP 241
            Y  ++ A+  +     + A ++ + + + K   S+ T     +    MG  KE +  L 
Sbjct: 487 SYGTVMAAYFKEY--NSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKL- 543

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
               +  +G  L    T Y++  HA  +  D++        + ++   PDV      +  
Sbjct: 544 --NELMEKG--LVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNG 599

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              +G +D   K+FE ++   K      Y TL++
Sbjct: 600 LCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQ 633



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 46/109 (42%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    +++L+    +   L +      +MK +G  P    YN L+S   +     QA
Sbjct: 234 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQA 293

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
            ++ E M     +P+  TY  L      AG++D  + +  +M   G  L
Sbjct: 294 TKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLL 342



 Score = 38.5 bits (88), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 27/137 (19%), Positives = 55/137 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR    +    NTV+ +L  ++R+   + +       G  P    + +++    K 
Sbjct: 439 DEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKE 498

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +      D+M      P ++ YN LI    +     +AI    E+ +  + P+  TY
Sbjct: 499 YNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTY 558

Query: 150 VCLLNACAAAGQLDPVY 166
             +++A    G L+  +
Sbjct: 559 NIIIHAYCKEGDLENAF 575


>gi|242063722|ref|XP_002453150.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
 gi|241932981|gb|EES06126.1| hypothetical protein SORBIDRAFT_04g000850 [Sorghum bicolor]
          Length = 757

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 159/385 (41%), Gaps = 26/385 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            A  YN V+ ++  + R  + R +Y+ M+ DGV P    +++LI G     +++      
Sbjct: 215 TALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVF 274

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK +G  PDV  YN L++   +  + + A ++F+EM    ++ N  +Y  ++      
Sbjct: 275 GEMKGHGVTPDVTTYNALLNAWVRTGDLESARKVFDEMTGKGIERNSVSYNVMIKGYVEG 334

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +++   A+  +M   G  L +  +A L+    +   RA +    + ++ E+        
Sbjct: 335 NRVEEAVALFAEMGEKGLRLSEKTFAALMPGLCDDQGRAAEARKAVDDMAERRL------ 388

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT---VYHVAFHA-CAELKDVQA 275
           T  + +    +  +  +  +L  A  VHR+ G    +L     Y V     CA  K   A
Sbjct: 389 TPKDKSVFLRLVTTLCKAGDLDGALEVHRKSGQFKHVLVDPRQYGVLMEGLCAGGKSEMA 448

Query: 276 METLLEMLKK----DRKSPDVYIVMQN-IRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
           +E L E+++K      KSP +     N +  +L S       + F   +  +       +
Sbjct: 449 IEVLDELMEKGTLLSPKSPVLEASAYNPVIEHLCSNGSTTKAETFFRQLMKKGVDDKAAF 508

Query: 331 ATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
            +L+ G      P+    AQ+ L  M  R +   P   S +LLV +  K      A    
Sbjct: 509 NSLIRGHAKEGVPEA---AQEILAIMTRREVPTDPE--SHVLLVDSFLKKNEPADAKTAL 563

Query: 391 DLMQARKITPSLPAV-----EAYYN 410
           D M      PS PA+     EA +N
Sbjct: 564 DSMMQHGHLPS-PALFKSVMEALFN 587


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 6/282 (2%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R F   + V  +M   G       ++ LI G  +   +++ F F+  M+  G +PD   Y
Sbjct: 236 REFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 295

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
             LI+   K + S++A  + +EM   E+KPN   Y  L++     G  D  + ++++M A
Sbjct: 296 GALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 355

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
           AG   +K  Y  L+     K+ + D  +  + ++V  S    ++ T     E      SK
Sbjct: 356 AGVQPNKITYDNLVRGLC-KMGQMDRASLLLKQMVRDSHRPDTI-TYNLIIEGHFRHHSK 413

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           ++ + L +          +S  +  Y +  H   +  + +    LLE +      P+ ++
Sbjct: 414 KDAFRLLS----EMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFV 469

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               I  Y   G++    ++F+        P    Y +L+ G
Sbjct: 470 YAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG 511



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 123/309 (39%), Gaps = 10/309 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    NA  Y  +++    +    L  +++D M    V P    ++SLI G  K 
Sbjct: 456 EEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKV 515

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            R++++  +  QM+  G LP+   Y+ LI   G  KN D   A ++ + M    +KPN  
Sbjct: 516 GRVEESTKYFAQMQERGLLPNEFTYSGLIH--GYLKNGDLESAEQLVQRMLDTGLKPNDV 573

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
            Y+ LL +   +  ++ V +  + M   G  LD   Y  LI  H        + A +++ 
Sbjct: 574 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI--HNLSSSGNMEAAFRVLS 631

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            +E++     V    +          +E+ + +   + + ++G  +   +  Y+      
Sbjct: 632 GIEKNGSVPDVHVYSSLISGLCKTADREKAFGI--LDEMSKKG--VDPNIVCYNALIDGL 687

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +  D+     +   +      P+       I      GDI N   ++ + + +   P A
Sbjct: 688 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 747

Query: 328 ELYATLVEG 336
            +Y+ L  G
Sbjct: 748 FVYSVLTTG 756



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 122/306 (39%), Gaps = 22/306 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L          D+ ++M   G++P   ++  LI G  +   +       
Sbjct: 431 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF 490

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M     LPD+  YN LI    K    +++ + F +M++  + PN  TY  L++     
Sbjct: 491 DKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 550

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G L+    +V+ M   G   +   Y  L+ ++     ++DD     IE V  S  + S+ 
Sbjct: 551 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF----KSDD-----IEKV--SSTFKSML 599

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--------LTVYHVAFHACAELK 271
             G   +N + G+    ++NL ++  +      LS +        + VY        +  
Sbjct: 600 DQGVMLDNRIYGIL---IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA 656

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
           D +    +L+ + K    P++      I     SGDI     VF   +     P    Y 
Sbjct: 657 DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYT 716

Query: 332 TLVEGA 337
           +L++G+
Sbjct: 717 SLIDGS 722



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +++    N   YN ++  L         R+V++ ++  G+ P    + SLI G+ K 
Sbjct: 666 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 725

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
             + + F+  ++M A G  PD  VY+ L + C    + +QA+ + EEM
Sbjct: 726 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 773



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 79/402 (19%), Positives = 153/402 (38%), Gaps = 58/402 (14%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ +V  L    +      +   M+ D  +P    ++ +I G  +    +D F   
Sbjct: 361 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 420

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+  G  P+V  Y Y I + G C++ +  +A  + EEM    +KPN   Y  L++   
Sbjct: 421 SEMENAGISPNV--YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 478

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
             G +     I   MT      D +CY  LI    +K+ R +++     ++ E+    + 
Sbjct: 479 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNE 537

Query: 218 VETSG-----------NNAE-------------NEMMGVSKEELYNLPTAEYVHRRGGFL 253
              SG            +AE             N+++ +   E Y    ++ + +     
Sbjct: 538 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYF--KSDDIEKVSSTF 595

Query: 254 SRLLT--------VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
             +L         +Y +  H  +   +++A   +L  ++K+   PDV++    I     +
Sbjct: 596 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKT 655

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF--- 362
            D +    + ++       P    Y  L++G           L +   ++  +RN+F   
Sbjct: 656 ADREKAFGILDEMSKKGVDPNIVCYNALIDG-----------LCKSGDISY-ARNVFNSI 703

Query: 363 ----LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
               L P   +   L+    K G  + A Y+++ M A  ITP
Sbjct: 704 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITP 745



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D+M   GV P    +++LI G  K   +       + + A G +P+   Y  LI   G
Sbjct: 664 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLID--G 721

Query: 123 KCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG-- 178
            CK  D   A  ++ EM    + P+   Y  L   C++AG L+    ++ +M   G    
Sbjct: 722 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASI 781

Query: 179 ------LDKFCYAG 186
                 +D FC  G
Sbjct: 782 SSFNNLVDGFCKRG 795


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 20/295 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I   M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L TA EY  R      RL  V + A 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GSCKEG--DLETAFEYRKRMIKENIRLDXVAYTAL 352

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMI 338

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G +
Sbjct: 339 KENIRLDXVAYTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 WTGSKLLKEMQRDG 411



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 5/168 (2%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKA 104
           V+  L   + F L+   Y++ +  G   +   F+ L+   +K    RL  + F  D +  
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVF--DAITK 164

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P V  +N L++   K  + D+  R+   M+   V+P+  TY  L+N      ++D 
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDD 224

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
              +  +M   G   +   +  LI  H  K  R D       +++ QS
Sbjct: 225 ANELFDEMLDNGLVPNGVTFTTLIDGHC-KNGRVDLAMEIYXQMLSQS 271


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++   ++      R ++ +M  +G +P+   ++ ++ G +K   +++   F+
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFK 446

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+  G +PD+  Y+Y   V G C N   D A+R+FEEMK+   KPN   Y  L++  A
Sbjct: 447 KEMEKKGLVPDI--YSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 504

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNK 194
             G+ +  + +  +M   G   D   Y+ L+ + HT+K
Sbjct: 505 KEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDK 542



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 164/408 (40%), Gaps = 56/408 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     NA  YN+++ + T ++    + ++   M  +G++PT   +  L+ G    
Sbjct: 167 DEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAA 226

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       ++MK+     DV  Y+ +I+   +  N  +A  +F+E     ++PN  TY
Sbjct: 227 RDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTY 286

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+N     GQ++    +V DM   G G+++  +  +I  +  K     D A +I  ++
Sbjct: 287 GALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRK--NMVDKALEIKMIM 344

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           E+                  MG+ + ++Y   T     RR   +                
Sbjct: 345 EK------------------MGI-ELDVYTYNTLACGLRRANRMD--------------- 370

Query: 270 LKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
               +A   L  M++K  +   V Y  + +I C  + GD+    ++F +   +   P   
Sbjct: 371 ----EAKNLLRIMIEKGVRPNHVSYTTLISIHC--NEGDMVEARRLFREMAGNGAEPSLV 424

Query: 329 LYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            Y  +    M GY  KG ++ A+     M  +   L P + S   LV     +G    A 
Sbjct: 425 TYNVM----MDGYIKKGSIREAERFKKEMEKKG--LVPDIYSYAALVHGHCVNGKVDVAL 478

Query: 388 YIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLL 435
            +++ M+ R   P+L A  A  +GL      A + R     + YDN+L
Sbjct: 479 RLFEEMKQRGSKPNLVAYTALISGL------AKEGRSEEAFQLYDNML 520



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 70  DGVQPTRDLFHSLIV-GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           D V P   L  S++V G  K  R+       D+M  +G   +   YN L+    + K+ D
Sbjct: 139 DSVTP---LSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDD 195

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +   + + M+   ++P   TY  L++  +AA  +  V A+  +M +     D + Y+ +I
Sbjct: 196 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 189 TAH 191
            A+
Sbjct: 256 NAY 258


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 1/175 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  +  +      R ++++M   G+ P    ++S+I G  K  RL DT  F ++MK
Sbjct: 98  YNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK 157

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  YN LI+   K     + +  F EMK+  +KPN  +Y  L++A    G + 
Sbjct: 158 DMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQ 217

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
                  DM   G   +++ Y  LI A+  KI    D      E+++    W+ V
Sbjct: 218 QAIKFYVDMRRVGLVPNEYTYTSLIDAYC-KIGNLSDAFRLANEMLQVGVEWNVV 271



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           +RFF       DM+  G +PT   ++ +I    K   ++      ++MK  G +PD   Y
Sbjct: 80  KRFF------KDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTY 133

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N +I   GK    D  +  FEEMK    +P+  TY  L+N     G+L       R+M  
Sbjct: 134 NSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKR 193

Query: 175 AGAGLDKFCYAGLITA 190
            G   +   Y+ L+ A
Sbjct: 194 NGLKPNVVSYSTLVDA 209



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N  +P   V++ L SV       ++AI+ F +MK++ V P  ++   LL+  A  G+ D 
Sbjct: 19  NVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDG 78

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
           V    +DM  AGA    F Y  +I
Sbjct: 79  VKRFFKDMIGAGAKPTVFTYNIMI 102



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FF+D + A G  P V  YN +I    K  + + A  +FEEMK   + P+  TY  +++  
Sbjct: 82  FFKDMIGA-GAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGF 140

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRA 198
              G+LD       +M       D   Y  LI       K+P+ 
Sbjct: 141 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKG 184



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 43/106 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ Y  ++  L    +      +++ M   G+ P R  + SL+ G  K   + +    R
Sbjct: 340 NAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 399

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
           D+M   G   D+  Y  L+     C    +A    EEM    + P+
Sbjct: 400 DKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 445



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R     N   Y+T+V +   +         Y DM   G+ P    + SLI    K  
Sbjct: 190 EMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIG 249

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            L D F   ++M   G   +V  Y  LI  +CG  +N  + + + +EM + ++K    T+
Sbjct: 250 NLSDAFRLANEMLQVGVEWNVVTYTALIDGLCG-WENPTEGLHLLDEMVELDIKVTVVTF 308

Query: 150 VCLLNA 155
             L++ 
Sbjct: 309 CVLIDG 314



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 54/121 (44%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+Q    ++ ++I G  KG++++      +QM   G +PD   Y  L+    K  N  +A
Sbjct: 336 GLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEA 395

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + + ++M +  +K +   Y  L+   +   QL    + + +M   G   D+     ++  
Sbjct: 396 LALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKK 455

Query: 191 H 191
           H
Sbjct: 456 H 456


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L+ + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + ++M +  +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDSAFEHRKRMIQENIRLDDVVYTALISG 361



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 18/313 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L + F  +  M A+G  PDV  Y+ LI+   K    D A  +F+EM    + PNG T+
Sbjct: 191 GVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTF 250

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L++     G++D    I + M +     D   Y  LI     K  + +A D    +  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM-- 308

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--RLLTVYHVAFH 265
                KG    + +     +   G  KE   +L +A + HR+       RL  V + A  
Sbjct: 309 ---SRKGLKPDKITYTTLID---GCCKEG--DLDSA-FEHRKRMIQENIRLDDVVYTALI 359

Query: 266 A--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
           +  C E + V A + L EML     +PD       I  +   GD+  G K+ ++      
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVGL-NPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 324 FPPAELYATLVEG 336
            P    Y  L+ G
Sbjct: 419 VPSVVTYNVLMNG 431



 Score = 38.1 bits (87), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 63/328 (19%), Positives = 126/328 (38%), Gaps = 17/328 (5%)

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKP 144
           MK    +  + F +++   G+   +  +N L+     CK+ D   A  +F+ + K+ ++P
Sbjct: 118 MKLKYFKLVWGFYEEILECGYPASLYFFNILMH--RFCKDGDIRVAQSVFDAITKWGLRP 175

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           +  +Y  L+N     G LD  + +   M A+G   D + Y+ LI    +K  + DD    
Sbjct: 176 SAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLING-LSKESKMDDADEL 234

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
             E++ +      +  +G      + G  K    +L    Y       L   L  Y+   
Sbjct: 235 FDEMLVK-----GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLI 289

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
           +   +  D++    L++ + +    PD       I      GD+D+  +  +  I     
Sbjct: 290 YGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIR 349

Query: 325 PPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGY 383
               +Y  L+ G    G +    ++ ++ L      ++ L+P  G+  +++    K G  
Sbjct: 350 LDDVVYTALISGLCQEGRSVDAEKMLREML------SVGLNPDTGTYTMIINEFCKKGDV 403

Query: 384 TTANYIWDLMQARKITPSLPAVEAYYNG 411
              + +   MQ     PS+       NG
Sbjct: 404 WKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 121/302 (40%), Gaps = 24/302 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V  L   ++      + + +  +G  PT   +++L+ G  K  RL++      ++ 
Sbjct: 168 YTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 227

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  PDV  Y  LI   GK K S +A ++F+EM    +  +   Y  L+     AG++ 
Sbjct: 228 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIP 287

Query: 164 PVYAIVRDMTAAGA---------GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
              ++ + MT+ G           +D  C AG I A           A +I + +E ++G
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGA-----------AVRIFKSME-ARG 335

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
            +  E   +     + G+ K    +         +  F +     Y++      +  DV+
Sbjct: 336 LAPNEVVYSAL---IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 392

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A     + + +    PDVY     +  +  +G+ D    VF+D   S   P    Y TL+
Sbjct: 393 AARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLI 452

Query: 335 EG 336
            G
Sbjct: 453 SG 454



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 63/154 (40%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R  A N   Y+ ++  L   R+     ++   M      P    ++ LI G  K   ++ 
Sbjct: 334 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEA 393

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              F D+M   G  PDV  YN L+S   K  N+D A  +F++M      PN  TY  L++
Sbjct: 394 ARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLIS 453

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                 QL       + M   G   D F Y+ L+
Sbjct: 454 GLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLV 487



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 65/160 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E A R    +   Y  ++  L    +      VY  M   G  P      ++I G  K 
Sbjct: 259 KEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKA 318

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+         M+A G  P+  VY+ LI    K +  D A+ +  +MKK    P+  TY
Sbjct: 319 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 378

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             L++    +G ++   A   +M  AG   D + Y  L++
Sbjct: 379 NILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVS 418



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 56/133 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L         R  +D+M+  G +P    ++ L+ G  K           D M 
Sbjct: 378 YNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMS 437

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++   P+V  Y  LIS   K +   +A   F+ MK+    P+   Y  L++    +G+L+
Sbjct: 438 SSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLE 497

Query: 164 PVYAIVRDMTAAG 176
               +  +M  +G
Sbjct: 498 GGCMLFDEMERSG 510



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 5/135 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V+             V+DDM      P    + +LI G  K  +L     +   MK
Sbjct: 413 YNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMK 472

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PD  VY+ L+   G CK+   +    +F+EM++  V  N QT   L+     A +
Sbjct: 473 ERGCPPDSFVYSSLVD--GLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANR 529

Query: 162 LDPVYAIVRDMTAAG 176
           +D   ++   +   G
Sbjct: 530 VDEAVSLFNAIRKEG 544



 Score = 38.9 bits (89), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++ +  + + N   Y T+++ L  +R+       +  M   G  P   ++ SL+ G  K 
Sbjct: 434 DDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKS 493

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+      D+M+ +G          +  +C K    D+A+ +F  ++K E  P+   Y
Sbjct: 494 GKLEGGCMLFDEMERSGVANSQTRTRLIFHLC-KANRVDEAVSLFNAIRK-EGMPHPYAY 551

Query: 150 VCLLNACAAAGQLDPV 165
             +++    + +++P 
Sbjct: 552 NSIISTLIKSAKVNPC 567


>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 70/157 (44%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N+      YN ++  L   +++ L+  VYD M+LD   P    ++ L+  + K  +L   
Sbjct: 216 NFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQF 275

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M   GF PD   YN L+ V GK      A+ +   M++    PN   +  L+N 
Sbjct: 276 HRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLING 335

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            + AG LD       ++   G   D  CY  +IT+ T
Sbjct: 336 LSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFT 372



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E AR+ ++ +   YN ++  L    +     ++ + M   G  P    F +LI G  + 
Sbjct: 280 DEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRA 339

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L    +F D++  NG +PDV  Y  +I+   +    ++A   F+EM      PN  TY
Sbjct: 340 GNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTY 399

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++      G+    Y+++ +M + G   +   Y+ L++   N  K+  A     +++E
Sbjct: 400 NSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKRMVE 459



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   + T++  L+        +  +D++  +G  P    +  +I    +  + +   
Sbjct: 322 FGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKAR 381

Query: 97  FFRDQMKANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            F D+M   G LP+V  YN +I    + GK K   +A  +  EM+    +PN   Y  L+
Sbjct: 382 AFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFK---EAYSMLSEMESRGCRPNFLVYSTLV 438

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           +    AG+L   + +++ M   G       YA L+T
Sbjct: 439 SYLRNAGKLGEAHKVIKRMVENGQ------YAHLMT 468



 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 57/145 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ S     +      + D+M   G  P    ++ L+    KG +        + M+
Sbjct: 259 YNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMR 318

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF P+V  +  LI+   +  N D     F+E+      P+   Y  ++ +   AGQ +
Sbjct: 319 EVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHE 378

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
              A   +M   G   + F Y  +I
Sbjct: 379 KARAFFDEMIMKGQLPNVFTYNSMI 403


>gi|384248596|gb|EIE22080.1| hypothetical protein COCSUDRAFT_56512 [Coccomyxa subellipsoidea
           C-169]
          Length = 780

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNAS-----EYNTVVTSLTSQRRFFLLRDVYDDMML 69
           GG   RR +  S     Y+ R  A + +     +Y  + + + + RR +L+RD+ ++M L
Sbjct: 46  GGPSPRRHY--SPPPSHYSPRYQARSGAPRDRMDYQLLASDVATARRTYLVRDIMEEMQL 103

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G+ P R    S I  +++ +R+ D F++ ++M+  G  P   +   L+SV  +  + D 
Sbjct: 104 NGLAPDRQFLESAIRYSLQSTRVGDCFYYYEEMRRRGMQPSERLKGSLVSVLARHGDMDA 163

Query: 130 AIRIFEEMKKYEVKPNG-QTYVCLLNACAAAGQLDPVYAIVR---DMTAAGAGLDKFCYA 185
           A+ +F +++      +G +  + ++NA A  G +  V   +R   D          + Y+
Sbjct: 164 ALEVFRQVQPSAQGEDGFELTLSIVNAFAEKGDVAKVRQQIRSFLDRYGDQPNAITYAYS 223

Query: 186 GLITAHTNK 194
            LI A+  K
Sbjct: 224 ALIRAYRKK 232


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + Y +    YNT+++ L   +  +   D+Y  +M +G  PT   +  L+ G +K 
Sbjct: 835 KEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKD 894

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +++D     D+M   G  P+ A+YN L++      N+++   +F+ M    + P+ ++Y
Sbjct: 895 GKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSY 954

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+ A   AG+L+   +  R +T  G   D   Y  LI
Sbjct: 955 TVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLI 993



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 1/174 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y  VV +L    R     DV+D M   G++P +  ++SLI G +K  RL    
Sbjct: 352 YNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHAL 411

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + M  +G  P+   Y   I+  GK   S +AI+ +E MK   + P+      +L + 
Sbjct: 412 ELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSL 471

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           A +G+L     +  ++ + G   D   Y  +I    +K   AD+      E++E
Sbjct: 472 AKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKC-CSKASNADEAMKVFSEMIE 524



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 59/131 (45%)

Query: 62   DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
            +++ +M+  G+ P    +  LI       RL D+  +  Q+   G  PD+  YN LI   
Sbjct: 937  ELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGL 996

Query: 122  GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            G+    ++A+ +F +M+K  + PN  TY  L+      G+      +  ++   G   + 
Sbjct: 997  GRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNV 1056

Query: 182  FCYAGLITAHT 192
            F Y  LI  ++
Sbjct: 1057 FTYNALIGGYS 1067



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 113/294 (38%), Gaps = 14/294 (4%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++ ++    R   +  V  +M   G + T   ++++I G +K   L +      ++ 
Sbjct: 814  YNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLM 873

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            + GF P    Y  L+    K    + A  +F+EM  Y  KPN   Y  LLN    AG  +
Sbjct: 874  SEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTE 933

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             V  + ++M   G   D   Y  LI A      R +D+ +   +L E       +E    
Sbjct: 934  KVCELFQNMVDQGINPDIKSYTVLIGALCTA-GRLNDSLSYFRQLTEL-----GLEPDLI 987

Query: 224  NAENEMMGVSK----EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
                 + G+ +    EE  +L        + G    L T   +  +   E K  +A +  
Sbjct: 988  TYNLLIHGLGRSGRLEEAVSLFND---MEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMY 1044

Query: 280  LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             E+LK   K P+V+     I  Y  SG  DN    +   I     P +  Y  L
Sbjct: 1045 EELLKNGWK-PNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQL 1097



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+ SL    R  + + V+ ++   GV P    +  +I    K S   +      +M  
Sbjct: 465 NAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIE 524

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
              +PDV   N LI    K    ++A +IF E+K+  + P   TY  LL      G++  
Sbjct: 525 TRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKE 584

Query: 165 VYAIVRDMTA 174
           V  ++ +M +
Sbjct: 585 VMHLLEEMNS 594



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           +LLR++ D     GV+P    +   I    +  R ++ +    +M+  G  PDV     L
Sbjct: 237 WLLREMEDH----GVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVL 292

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           I +         A  +F +MK  + KP+  TY+ LL+ C   G    V  I   M A G 
Sbjct: 293 IQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGY 352

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
             +   Y  ++ A   ++ R D+ A+ + + ++Q KG    + S N+
Sbjct: 353 NDNVVAYTAVVDALC-QVGRVDE-ASDVFDQMKQ-KGIEPQQYSYNS 396



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 23/301 (7%)

Query: 45  NTVVTS-LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           NTV+   L    R    +DV+  M     +P R  + +L+         +      + MK
Sbjct: 289 NTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMK 348

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G+  +V  Y  ++    +    D+A  +F++MK+  ++P   +Y  L++    A +L+
Sbjct: 349 ADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLN 408

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVEQSKGWSSVETS 221
               +   M   G   + + Y   I    N   ++ ++  A K  EL+ +SKG      +
Sbjct: 409 HALELFNHMNIHGPTPNGYTYVLFI----NYYGKSGESLKAIKRYELM-KSKGIVPDVVA 463

Query: 222 GNN-----AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QA 275
           GN      A++  +G++K   + L +        G     +T Y +    C++  +  +A
Sbjct: 464 GNAVLYSLAKSGRLGMAKRVFHELKSI-------GVCPDNIT-YTMMIKCCSKASNADEA 515

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           M+   EM++  R  PDV  V   I     +G  +   K+F +       P    Y TL+ 
Sbjct: 516 MKVFSEMIET-RCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLA 574

Query: 336 G 336
           G
Sbjct: 575 G 575



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 6/154 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP---TRDLFHSLIVGTMKGSRLQDTF 96
           N   Y   +  L    RF     +   M  +G +P   T  +   ++    + S  +D F
Sbjct: 250 NVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVF 309

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           +   +MKA+   PD   Y  L+  CG   +S   I I+  MK      N   Y  +++A 
Sbjct: 310 W---KMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDAL 366

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              G++D    +   M   G    ++ Y  LI+ 
Sbjct: 367 CQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISG 400



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L    R      +++DM   G+ P    ++SLI+   K  +  +     +++ 
Sbjct: 989  YNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             NG+ P+V  YN LI       ++D A   + +M      PN  TY+ L N
Sbjct: 1049 KNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLPN 1099



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M  +G +P V  Y+ L+   GK ++ +  + +  EM+ + VKPN  +Y   +     AG+
Sbjct: 208 MATDGIVPSVRTYSVLMLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGR 266

Query: 162 LDPVYAIVRDMTAAGAGLD 180
            +  Y I++ M   G   D
Sbjct: 267 FEEAYKILQKMEDEGCKPD 285


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+    +   Y +++  L    +    R ++ +M+  G++P    + +LI G  K 
Sbjct: 381 DEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKA 440

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +++ F   +QM   G  P+V  Y  L+    KC   D A  +  EM +  ++PN  TY
Sbjct: 441 GEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTY 500

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+N     G ++    ++ +M  AG   D   Y  ++ A+
Sbjct: 501 NALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAY 542



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    +   Y+ +V       +   +  + +++   G++P +  ++S+I    K  R+ +
Sbjct: 281 RGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVE 340

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  MK     PD  VY  LIS  GK  N     ++F+EMK+ ++ P+  TY  +++
Sbjct: 341 AEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIH 400

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
               AG++     +  +M + G   D+  Y  LI  +
Sbjct: 401 GLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 66/159 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    N   YN++++ L    R      V   M    + P   ++ +LI G  K 
Sbjct: 311 EELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKS 370

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   +   D+MK    +PD   Y  +I    +     +A ++F EM    +KP+  TY
Sbjct: 371 GNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTY 430

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++    AG++   +++   M   G   +   Y  L+
Sbjct: 431 TALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALV 469



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ +N+++     +       ++Y  M   GV P  + ++ LI G  K   +++ +F  
Sbjct: 601 NATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLH 660

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +M   GF    A YN LI    K K  ++A ++FEEM+ +      + Y
Sbjct: 661 KEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIY 710



 Score = 45.1 bits (105), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R + +N   Y T+++         +   ++D+M    + P    + S+I G  +  ++ 
Sbjct: 351 QRIFPDNVV-YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVV 409

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVC 151
           +      +M + G  PD   Y  LI   G CK  +  +A  +  +M +  + PN  TY  
Sbjct: 410 EARKLFSEMLSKGLKPDEVTYTALID--GYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTA 467

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L++     G++D    ++ +M+  G   +   Y  LI  
Sbjct: 468 LVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALING 506



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)

Query: 67  MMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +MLD G+QPT   F+ L+ G      L+D       M   G +P+   +N L+       
Sbjct: 557 IMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRN 616

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           N    I I++ M    V P+  TY  L+     A  +   + + ++M   G  L    Y 
Sbjct: 617 NMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYN 676

Query: 186 GLI 188
            LI
Sbjct: 677 SLI 679



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 55/137 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V  L       +  ++  +M   G+QP    +++LI G  K   ++      
Sbjct: 461 NVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLM 520

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   GF PD   Y  ++    K     +A  +   M    ++P   T+  L+N    +
Sbjct: 521 EEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMS 580

Query: 160 GQLDPVYAIVRDMTAAG 176
           G L+    +++ M   G
Sbjct: 581 GMLEDGERLIKWMLDKG 597



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 44/90 (48%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           QM+  G +PDV  Y+ ++    + +   + +++ EE+++  +KPN  TY  +++     G
Sbjct: 277 QMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTG 336

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++     ++R M       D   Y  LI+ 
Sbjct: 337 RVVEAEQVLRVMKNQRIFPDNVVYTTLISG 366


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 131/295 (44%), Gaps = 20/295 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  + A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMEDANELFDEMLNNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L TA EY  R      RL  V + A 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GSCKEG--HLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFEHRKRMIQENIRLDDVAYTALISG 361



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDGANELFDEMLVKGLVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG   ++         + G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 309 -----SMKG---LKPDKFTYTTLIDGCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYT 356

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       I  +   GD+  G K+ ++   
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLK-PDTGTYTMIINEFCKKGDVWKGSKLLKEMHR 415

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 416 DGHAPSVVTYNVLMNG 431


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +  A +A  Y   + +     R+ +  D+  +M+   V P   +++S I    K  
Sbjct: 93  EMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAG 152

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + +       +M   G  PDV  Y+  IS CG+    ++A+ +FE+M+   V P+  TY 
Sbjct: 153 QWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYG 212

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + ACA  G+     +++R +   G   +   Y+ +ITA
Sbjct: 213 SAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITA 252



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 21/261 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E A    A +   Y++ +++     R+    ++++DM   GV P    + S I     G
Sbjct: 162 KEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANG 221

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++      ++   G  P+V  Y+ +I+ C K      A+ +  EMK   + PN  TY
Sbjct: 222 GRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITY 281

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              ++ACA  G+      ++R+M   G   D   Y+ +I A +       D   + I+++
Sbjct: 282 NAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSK-----GDRWKEAIDIL 336

Query: 210 EQ--SKGWSSVETSGNNAENEMM--GVSKEE---LYNLPTAEYVHRRGGFLSRLLTVYHV 262
            +  + G S    S N+A +     G  KE    L  +PTA    R  G        Y+ 
Sbjct: 337 REMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIG--------YNS 388

Query: 263 AFHACAELKDV-QAMETLLEM 282
           A  ACA+ +   +A+  L EM
Sbjct: 389 AIAACAKGEQWKEALALLREM 409



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M  +G  P    + ++I    KG + +   FF  +M   G  PD   Y   I+ C +  
Sbjct: 58  EMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGG 117

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
               A+ +  EM   +V PN   Y   +N+CA AGQ +   ++V++M   G   D   Y+
Sbjct: 118 RWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYS 177

Query: 186 GLITA 190
             I+A
Sbjct: 178 SAISA 182



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 66/159 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A    A N   YN+ + +     ++    D+  +M   G+ P    + S I    KG 
Sbjct: 443 EMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGD 502

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++      +M A G  PD+  YN  I  C K      A+ +  EM+   + PN  +Y 
Sbjct: 503 QWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYS 562

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             ++AC   GQ     A++ +M  +G   D   Y  L+ 
Sbjct: 563 SAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMV 601



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           A G R+ +      E   R+   N   YN+ + S     ++ +   +  +M   G+ P  
Sbjct: 114 ARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDV 173

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             + S I    +G R ++     + M+ +G  PDV  Y   I+ C       +A+ +  +
Sbjct: 174 ISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRK 233

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           +    + PN  +Y  ++ ACA  GQ      ++R+M A
Sbjct: 234 IPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKA 271



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 66/163 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E      A + S Y+ V+ +     ++ +      +M   G+ P    + + I    +G 
Sbjct: 58  EMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGG 117

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +       +M A    P+V +YN  I+ C K    + A+ + +EM    + P+  +Y 
Sbjct: 118 RWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYS 177

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             ++AC   G+ +    +  DM  +G   D   Y   I A  N
Sbjct: 178 SAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACAN 220



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 6/253 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN+ + +     ++   + +  +M   GV      ++S I    KG + ++     
Sbjct: 347 NAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALL 406

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G    V  Y+  I  CGK     +A  +  EM    + PN   Y   ++AC   
Sbjct: 407 REMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRG 466

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            Q +    ++R+M   G   D F Y+  I A      + D     +  L E S    + +
Sbjct: 467 DQWEEAVDLLREMPTVGLSPDVFSYSSAIAACA----KGDQWKEALAVLKEMSAAGLAPD 522

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
               N+  +    SK   + +  A     R   L+  +  Y  A  AC      +    L
Sbjct: 523 LICYNSAID--ACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIAL 580

Query: 280 LEMLKKDRKSPDV 292
           LE ++     PDV
Sbjct: 581 LEEMRGSGVVPDV 593



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 58/153 (37%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YN  + +     R+    D+  +M   G+ P    + S+I    KG R ++   
Sbjct: 275 APNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAID 334

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M   G  P+   YN  I  C K     +A  +  EM    V      Y   + ACA
Sbjct: 335 ILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACA 394

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              Q     A++R+M   G     F Y+  I A
Sbjct: 395 KGEQWKEALALLREMPTVGLHTTVFSYSSAIDA 427



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/296 (18%), Positives = 111/296 (37%), Gaps = 16/296 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++V+ + +   R+    D+  +M   G+ P    ++S I    KG + ++      +M 
Sbjct: 316 YSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMP 375

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G    V  YN  I+ C K +   +A+ +  EM    +     +Y   ++AC       
Sbjct: 376 TAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWI 435

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               ++R+M   G   ++ CY   I A         D   + ++L+ +      + T G 
Sbjct: 436 KAKELLREMATVGLAPNEVCYNSAIDACGR-----GDQWEEAVDLLRE------MPTVGL 484

Query: 224 NAE-----NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
           + +     + +   +K + +    A         L+  L  Y+ A  AC++    +    
Sbjct: 485 SPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVA 544

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           LL  ++    +P++      I   +  G    G  + E+   S   P    Y  L+
Sbjct: 545 LLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALM 600



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 50/114 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++ + +     ++     V  +M   G+ P    ++S I    KG R +       +M+
Sbjct: 491 YSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMR 550

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           A G  P++  Y+  I  C +     + I + EEM+   V P+  TY  L+  CA
Sbjct: 551 AAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPDVITYHALMVTCA 604



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 41/92 (44%)

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           I    +G + +       +M   G  PD++ Y+ +I  C K      A+    EM    +
Sbjct: 40  ITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGI 99

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
            P+ ++Y   +NACA  G+      ++R+M A
Sbjct: 100 APDARSYGAAINACARGGRWKIALDLLREMLA 131



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 38/88 (43%)

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K  G+L D   Y   I+ CG+    +QA+R+  EM      P+   Y  +++ACA  GQ 
Sbjct: 25  KLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQW 84

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                 + +M   G   D   Y   I A
Sbjct: 85  KMAVFFLMEMPTKGIAPDARSYGAAINA 112


>gi|298711148|emb|CBJ32373.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 20/209 (9%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M   GV+P R ++++LI   +KG +++      ++M+  G  PDV  Y  ++S C +  
Sbjct: 580 EMEQAGVRPNRVVYNTLIASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRES 639

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           +  +A  +  EM+ + VKPN +T   +L     AG+++   A+     A+G  +D  C+ 
Sbjct: 640 DWRRAEALLSEMESFGVKPNSRTLTAVLKVYGDAGEVERALALFEQYDASGMVMDVICFN 699

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
            L+      + + DD  T ++EL      +S +E+ G   ++  M +          AE+
Sbjct: 700 TLM----GPVLKKDDPET-VLEL------FSRMESRGVEPDSLTMSLVLRAAEQAGAAEW 748

Query: 246 -------VHRRGGFLSRLLTVYHVAFHAC 267
                  +   GG ++  + VY     AC
Sbjct: 749 AWLLMEKMREEGGVIA--MQVYADGIRAC 775



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 144/359 (40%), Gaps = 44/359 (12%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV+P R  + +++     G + +      D+M+  G   D  VY   I  C K    ++A
Sbjct: 443 GVEPNRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKA 502

Query: 131 IRIFEEM--KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +    ++  +K  ++     Y   ++A   A Q++ +  +V  M A+G   D++ YA ++
Sbjct: 503 LDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMM 562

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE-LYNLPTA---- 243
                        A+ I    E+S  WS +       E E  GV     +YN   A    
Sbjct: 563 ------------RASGIDGSWEES--WSML------VEMEQAGVRPNRVVYNTLIASVLK 602

Query: 244 -EYVHRRGGFLSRL--------LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
            E + +    L+R+        +T Y      C    D +  E LL  ++     P+   
Sbjct: 603 GEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRT 662

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV 354
           +   ++ Y  +G+++    +FE Y  S        + TL+   +    P   +   +   
Sbjct: 663 LTAVLKVYGDAGEVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDP---ETVLELFS 719

Query: 355 NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLK 413
            M SR +   P   +  L++ A E++G    A + W LM+  +    + A++ Y +G++
Sbjct: 720 RMESRGV--EPDSLTMSLVLRAAEQAG---AAEWAWLLMEKMREEGGVIAMQVYADGIR 773


>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 70/157 (44%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N+      YN ++  L   +++ L+  VYD M+LD   P    ++ L+  + K  +L   
Sbjct: 216 NFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQF 275

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M   GF PD   YN L+ V GK      A+ +   M++    PN   +  L+N 
Sbjct: 276 HRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLING 335

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            + AG LD       ++   G   D  CY  +IT+ T
Sbjct: 336 LSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFT 372



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E AR+ ++ +   YN ++  L    +     ++ + M   G  P    F +LI G  + 
Sbjct: 280 DEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRA 339

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L    +F D++  NG +PDV  Y  +I+   +    ++A   F+EM      PN  TY
Sbjct: 340 GNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTY 399

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++      G+    Y+++ +M + G   +   Y+ L++   N  K+  A     +++E
Sbjct: 400 NSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKQMVE 459



 Score = 44.7 bits (104), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   + T++  L+        +  +D++  +G  P    +  +I    +  + +   
Sbjct: 322 FGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKAR 381

Query: 97  FFRDQMKANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            F D+M   G LP+V  YN +I    + GK K   +A  +  EM+    +PN   Y  L+
Sbjct: 382 AFFDEMIMKGQLPNVFTYNSMIRGFCMVGKFK---EAYSMLSEMESRGCRPNFLVYSTLV 438

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           +    AG+L   + +++ M   G       YA L+T
Sbjct: 439 SYLRNAGKLGEAHKVIKQMVENGQ------YAHLMT 468



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 57/145 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ S     +      + D+M   G  P    ++ L+    KG +        + M+
Sbjct: 259 YNVLLFSSCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMR 318

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF P+V  +  LI+   +  N D     F+E+      P+   Y  ++ +   AGQ +
Sbjct: 319 EVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHE 378

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
              A   +M   G   + F Y  +I
Sbjct: 379 KARAFFDEMIMKGQLPNVFTYNSMI 403


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 112/278 (40%), Gaps = 16/278 (5%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD + SLI    +            +M   G  PD++ YN ++S   
Sbjct: 453 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA 512

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +     QA ++F EM+  + KP+  +Y  LL+A A A +LD + A+  D+ A       +
Sbjct: 513 RGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNW 572

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-----EEL 237
               L+  + NK+    +T     EL  +     S++ +  NA   + G +K     EE+
Sbjct: 573 LVKTLVLVN-NKVNSLSETEKAFQELRRRR---CSLDINVLNAMVSIYGKNKMVKKVEEV 628

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
             L     ++            Y+   H  + L D +  E +L  +K     PD Y    
Sbjct: 629 LTLMKENSINHSAA-------TYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNT 681

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            I  Y   G +    ++F +  CS   P    Y   ++
Sbjct: 682 VIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIK 719



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   Y T+++ L    +       Y +M+ +G  P    +++LI   M G
Sbjct: 350 QEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALI--KMHG 407

Query: 90  SR--LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
            R    +     D +++ G++PDV  +N L++V G+     +   +F+EMKK    P   
Sbjct: 408 VRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERD 467

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           TYV L+++ +  G  D    I + M  AG   D   Y  +++A
Sbjct: 468 TYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 510



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M  DG++  R  +++LI    +    ++     D+MKA GF PD   +N L+ V GK 
Sbjct: 245 DSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKA 304

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +  ++AI + ++M+     P+  TY  L++A    G L+    + ++M   G   D   Y
Sbjct: 305 RRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTY 364

Query: 185 AGLITAHTNKIPRADDTATKIIELV 209
             LI+   ++I + D       E+V
Sbjct: 365 TTLISG-LDRIGKIDAALATYSEMV 388



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 53/332 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           YNT+++     RR  L R+   ++D+M   G +P +  F+SL+    K  R ++      
Sbjct: 259 YNTLISCC---RRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLK 315

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M+  G  P V  YN LIS   K    ++A+ + +EM+   +KP+  TY  L++     G
Sbjct: 316 KMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIG 375

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAH------TNKIPRADD--TATKIIELVEQS 212
           ++D   A   +M   G   +   Y  LI  H      T  +   DD  +A  + ++V   
Sbjct: 376 KIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVT-- 433

Query: 213 KGWSSVET--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL-------------- 256
             W+++      N  ++E+ GV KE    +  A Y+  R  ++S +              
Sbjct: 434 --WNTLLAVFGQNGLDSEVSGVFKE----MKKAGYIPERDTYVSLISSYSRCGLFDQAME 487

Query: 257 -------------LTVYHVAFHACAE-LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
                        ++ Y+    A A   + VQA +   EM  +D K PD       +  Y
Sbjct: 488 IYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCK-PDELSYSSLLHAY 546

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
            ++  +D    + ED       P   L  TLV
Sbjct: 547 ANAKKLDKMKALSEDIYAQRIEPHNWLVKTLV 578



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/178 (19%), Positives = 82/178 (46%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           A G R+        E   R+   +   Y++++ +  + ++   ++ + +D+    ++P  
Sbjct: 512 ARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHN 571

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
            L  +L++   K + L +T     +++      D+ V N ++S+ GK K   +   +   
Sbjct: 572 WLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTL 631

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           MK+  +  +  TY  L++  +  G  +   AI+ ++ ++G   D++ Y  +I A+  K
Sbjct: 632 MKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRK 689



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           ++K++G  PD   YN +I   G+     +A R+F EMK   VKP+  TY   + +  A  
Sbjct: 666 EIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANL 725

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +    +VR + A G   ++  Y  ++  +
Sbjct: 726 MFEEAIDLVRYLVAQGCKPNERTYNSILEGY 756



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/111 (20%), Positives = 50/111 (45%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++P R  ++++I    +  ++++      +MK +G  PD+  YN  I         ++A
Sbjct: 671 GMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEA 730

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           I +   +     KPN +TY  +L      G++    + + ++     G+ K
Sbjct: 731 IDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNLPKIYPGISK 781


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 121/311 (38%), Gaps = 13/311 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            E  R+    +   YN ++ +L   R       V   M  +G QP    ++ +I G    
Sbjct: 289 HEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATL 348

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYN-YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            RL++      +MK+ G +P++ + N +L S+C K   S +A  IF+ M     KP+  +
Sbjct: 349 GRLKEAAKMFRKMKSRGLIPNIVICNSFLASLC-KHGRSKEAAEIFDSMTAKGHKPDIVS 407

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  LL+  A+ G    +  +   M + G   D   +  LI A+  +    DD      E+
Sbjct: 408 YCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKR-GMVDDAMLIFTEM 466

Query: 209 VEQSKGWSSVETSGNNAENEMMG--VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
            +Q      V  S   +    MG      E +N   A  +            VYH     
Sbjct: 467 QQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTA-------VYHSIIQG 519

Query: 267 -CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C     V+A E + EM+ K    PD+      I      G + + H +F+      + P
Sbjct: 520 FCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERP 579

Query: 326 PAELYATLVEG 336
               + +L++G
Sbjct: 580 DVITFTSLIDG 590



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N+V+ SL    R     D++D +   G +P    F SLI G     ++   F   D M+
Sbjct: 549 FNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAME 608

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   D+  Y+ L+    K    +  + +F EM++  VKPN  TY  +L     AG+  
Sbjct: 609 VVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 164 PVYAIVRDMTAAG 176
                  +M  +G
Sbjct: 669 AARKKFHEMIESG 681



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 109/275 (39%), Gaps = 30/275 (10%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P+V  YN +I    K   + +A  +F EM +  VKP+  TY  +++A   A  +D    +
Sbjct: 263 PNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTN--------KIPRADDTATKIIELVEQSKGWSSVET 220
           +R MT  GA  D   Y  +I  +          K+ R   +   I  +V  +   +S+  
Sbjct: 323 LRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCK 382

Query: 221 SGNNAENEMMGVS------KEELYNLPTAEYVHRRGGFLSRLL---------------TV 259
            G + E   +  S      K ++ +  T  + +   G+ + ++                V
Sbjct: 383 HGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRV 442

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
           +++  HA A+   V     +   +++   SPDV      I  +   G + +  + F   +
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 320 CSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTL 353
                P   +Y ++++G  M G   K  +L  + +
Sbjct: 503 ARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMI 537



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV-QPTRDLFHSLIVGTMKGSRLQ 93
           R    N + Y++++            +++  +M+  G+ +P    F+S+I    K  R+ 
Sbjct: 504 RGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVM 563

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           D     D +   G  PDV  +  LI   G C     D+A +I + M+   V+ +  TY  
Sbjct: 564 DAHDIFDLVTDIGERPDVITFTSLID--GYCLVGKMDKAFKILDAMEVVGVETDIVTYST 621

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           LL+     G+++    + R+M   G   +   Y G++ A   +  R      K  E++E 
Sbjct: 622 LLDGYFKNGRINDGLTLFREMQRKGVKPNTVTY-GIMLAGLFRAGRTVAARKKFHEMIES 680


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN V+  L  + +     ++ ++M      P R  F++LI G              
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  NG  P+V  Y  LI+   K  N ++A+   ++M+   + PNG+TY  L++  +  
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           G L   Y I+++M   G       Y  LI  H   + R +D +  + E++E+
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHC-ILGRMEDASGLLQEMIER 442



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 44  YNTVVTSLT-SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YN ++ ++  +++   +   ++ +M+  GV P    ++ LI G      L+   FF  +M
Sbjct: 170 YNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEM 229

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           + NG LP+V  YN +I    K +   +A ++   M    + PN  +Y  ++N     GQ+
Sbjct: 230 ERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQM 289

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
                I+ +M+      D+  +  LI  + N
Sbjct: 290 KETSEILEEMSKRRYVPDRVTFNTLINGYCN 320



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 15/253 (5%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M+  G  P    + ++I G  +   L+  F  + +M A G  PDVA Y+ LI    K +
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQR 497

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +   +F+EM    + P+  TY  L+NA    G LD    +  +M   G   D   Y 
Sbjct: 498 RLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYN 557

Query: 186 GLITAHTNKIPRADDTATKIIEL-----VEQSKGWSSVETSGNNAENE-----MMGVSKE 235
            LI    NK  R  +    +++L     V     ++++  + NN E +     M G   +
Sbjct: 558 VLINGF-NKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMK 616

Query: 236 ELYNLP--TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
            L N      E + ++G  L+    VY+V  H  +++ +++    L + +     +P   
Sbjct: 617 GLMNEADRVLESMLQKGYKLNE--EVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674

Query: 294 IVMQNIRCYLHSG 306
            +M   +   H G
Sbjct: 675 TIMALAKSLYHEG 687



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           TS   EE ++R Y  +   +NT++    +   F     ++ +M+ +G+ P    + +LI 
Sbjct: 292 TSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
              K   L     F DQM+  G  P+   Y  LI    +     QA +I +EM +    P
Sbjct: 352 SMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP 411

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              TY  L+N     G+++    ++++M   G   D   Y+ +I+ 
Sbjct: 412 TIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 27/328 (8%)

Query: 21  RFFVTSAGAE-------EYARRNYANNASEYNTVVTSLTSQRR----FFLLRDVYDDMML 69
           R F T+   E       E  R     N   YNT++ +    R+    F LLR     M L
Sbjct: 211 RGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRL----MAL 266

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
            G+ P    ++ +I G  +  ++++T    ++M    ++PD   +N LI+      N  Q
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+ +  EM K  + PN  TY  L+N+   AG L+     +  M   G   +   Y  LI 
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 190 AHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247
             + +  + +A     +++E      G++    + N   N    + + E  +    E + 
Sbjct: 387 GFSQQGFLKQAYQIMKEMVE-----NGFTPTIITYNALINGHCILGRMEDASGLLQEMIE 441

Query: 248 RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
           R  GF+  +++   +    C   +  +A +  +EM+ K   SPDV      I+       
Sbjct: 442 R--GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG-ISPDVATYSSLIQGLCKQRR 498

Query: 308 IDNGHKVFEDYICSEKFPPAEL-YATLV 334
           +     +F++ + S   PP E+ Y +L+
Sbjct: 499 LGEVCDLFQEML-SLGLPPDEVTYTSLI 525



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 20/261 (7%)

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQ-AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K+ GF+P V  YN ++    + K S + A  IF+EM +  V PN  TY  L+     AG 
Sbjct: 159 KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           L+       +M   G   +   Y  +I A+     R    A K++ L+   KG +    S
Sbjct: 219 LEMGLFFFGEMERNGCLPNVVTYNTIIDAYCK--LRKIGEAFKLLRLMAL-KGLNPNLIS 275

Query: 222 GNNAENEM-----MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA-FHACAELKDVQA 275
            N   N +     M  + E L  +    YV  R  F + +    +V  FH        QA
Sbjct: 276 YNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH--------QA 327

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           +    EM+ K+  SP+V      I     +G+++   +  +        P    Y TL++
Sbjct: 328 LVLHAEMV-KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 336 G-AMFGYTPKGMQLAQDTLVN 355
           G +  G+  +  Q+ ++ + N
Sbjct: 387 GFSQQGFLKQAYQIMKEMVEN 407



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 72/402 (17%), Positives = 152/402 (37%), Gaps = 21/402 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E      + N   YN ++    +     +    + +M  +G  P    ++++I    K 
Sbjct: 192 KEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKL 251

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            ++ + F     M   G  P++  YN +I+  G C+     +   I EEM K    P+  
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVIN--GLCREGQMKETSEILEEMSKRRYVPDRV 309

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T+  L+N     G       +  +M   G   +   Y  LI    N + +A +   + +E
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLI----NSMCKAGNL-NRAME 364

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAF 264
            ++Q +    +  +G      + G S++    L  A  + +     GF   ++T Y+   
Sbjct: 365 FLDQMRD-RGLHPNGRTYTTLIDGFSQQGF--LKQAYQIMKEMVENGFTPTIIT-YNALI 420

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
           +    L  ++    LL+ + +    PDV      I  +  + +++   ++  + +     
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480

Query: 325 PPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
           P    Y++L++G       K  +L +   +     ++ L P   +   L+ A    G   
Sbjct: 481 PDVATYSSLIQGLC-----KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLD 535

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVV 426
            A  + D M  +  +P +       NG   +    +  RL++
Sbjct: 536 KALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLL 577


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ +        L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTYSVLIN--GLCKESKMDDANALFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I R M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISXLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K N  L DVA Y  LIS   +   S  A ++  EM    +KP   TY  ++N     G +
Sbjct: 339 KENIRLDDVA-YTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 WTGSKLLKEMQRDG 411



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 60/145 (41%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V+  L   + F L+   Y++ +  G   +   F+ L+    KG  +       D +   G
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWG 166

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             P V  +N L++   K  + D+  R+   M+   V+P+  TY  L+N      ++D   
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 167 AIVRDMTAAGAGLDKFCYAGLITAH 191
           A+  +M   G   +   +  LI  H
Sbjct: 227 ALFDEMLDNGLVPNGVTFTTLIDGH 251


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
            +A   E        N   ++TVV +L  + +     DV D M+  GV+P    +++L+ 
Sbjct: 253 VTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 312

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G    S + +     D M   GF PDV  Y+ LI+   K +  ++A+ +FEEM + E+ P
Sbjct: 313 GHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP 372

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           N  TY  L++     G+L    A+  +M   G   D   Y  L+        R  D A  
Sbjct: 373 NTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKN--RRLDEAIA 430

Query: 205 IIELVEQS 212
           +++ +E S
Sbjct: 431 LLKAIEGS 438



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 112/299 (37%), Gaps = 45/299 (15%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++ S    +R      V   ++  G QP    F++LI G     ++ +     
Sbjct: 93  NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 152

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   GF P+V  Y  LI+   K  ++  AIR+   M++   +P+   Y  ++++    
Sbjct: 153 DKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKD 212

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            Q+   + +  +M   G     F Y  LI A  N              L E    W  V 
Sbjct: 213 RQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCN--------------LCE----WKHVT 254

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
              N   N  +                      +  ++    V    C E K ++A + +
Sbjct: 255 ALLNEMVNSKI----------------------MPNVVIFSTVVDALCKEGKVMEAHD-V 291

Query: 280 LEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           ++M+ K    P+V  Y  + +  C     ++D   KVF+  +C    P    Y+TL+ G
Sbjct: 292 VDMMIKRGVEPNVVTYNALMDGHCL--RSEMDEAVKVFDTMVCKGFAPDVVSYSTLING 348



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 70/154 (45%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + +A +   Y+T++      +R      ++++M    + P    + +L+ G     RLQD
Sbjct: 333 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD 392

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +M   G +PD   Y  L+    K +  D+AI + + ++   + P+ Q Y  +++
Sbjct: 393 AIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 452

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               AG+L+    +  ++++ G   + + Y  +I
Sbjct: 453 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMI 486



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 112/306 (36%), Gaps = 20/306 (6%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           +   + + +  +NT+  +L+S  R   +             P+   F  L++   K    
Sbjct: 26  SHNTFHSKSLNFNTLDDALSSFNRMLHMHP----------PPSIADFTKLLISITKMKHY 75

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                   QM + G  P++   N LI+     +    A  +  ++ K   +PN  T+  L
Sbjct: 76  STVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTL 135

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVE 210
           +      G++  V  +   M   G   +   Y  LI    N + +   T  A +++  +E
Sbjct: 136 IRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLI----NGLCKVGSTSAAIRLLRSME 191

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
           Q      V    +  ++        + +NL  +E +H+    +S  +  Y+   HA   L
Sbjct: 192 QGNCQPDVVVYTSIIDSLCKDRQVTQAFNL-FSEMIHQG---ISPSIFTYNSLIHALCNL 247

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
            + + +  LL  +   +  P+V I    +      G +   H V +  I     P    Y
Sbjct: 248 CEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTY 307

Query: 331 ATLVEG 336
             L++G
Sbjct: 308 NALMDG 313



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 5/162 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    N   Y+T++  L    R      ++ +M+  G  P    +  L+    K 
Sbjct: 363 EEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKN 422

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKPNGQ 147
            RL +       ++ +   PD+ +Y  +I   G C+  + +A R +F  +    + PN  
Sbjct: 423 RRLDEAIALLKAIEGSNMDPDIQIYTIVID--GMCRAGELEAARDLFSNLSSKGLHPNVW 480

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           TY  ++N     G L     +  +M   G   +  C   LIT
Sbjct: 481 TYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNG-CTYNLIT 521


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 1/172 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN V+  L  + +     ++ ++M      P R  F++LI G              
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLH 331

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  NG  P+V  Y  LI+   K  N ++A+   ++M+   + PNG+TY  L++  +  
Sbjct: 332 AEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQ 391

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           G L   Y I+++M   G       Y  LI  H   + R +D +  + E++E+
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHC-ILGRMEDASGLLQEMIER 442



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 15/253 (5%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M+  G  P    + ++I G  +   L+  F  + +M A G  PDVA Y+ LI    K +
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQR 497

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +   +F+EM    + P+  TY  L+NA    G LD    +  +M   G   D   Y 
Sbjct: 498 RLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYN 557

Query: 186 GLITAHTNKIPRADDTATKIIEL-----VEQSKGWSSVETSGNNAENE-----MMGVSKE 235
            LI    NK  R  +    +++L     V     ++++  + NN E +     M G   +
Sbjct: 558 VLINGF-NKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMK 616

Query: 236 ELYNLP--TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
            L N      E + ++G  L+    VY+V  H  +++ +++    L + +     +P   
Sbjct: 617 GLMNEADRVLESMLQKGYKLNE--EVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674

Query: 294 IVMQNIRCYLHSG 306
            +M   +   H G
Sbjct: 675 TIMALAKSLYHEG 687



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           TS   EE ++R Y  +   +NT++    +   F     ++ +M+ +G+ P    + +LI 
Sbjct: 292 TSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
              K   L     F DQM+  G  P+   Y  LI    +     QA +I +EM +    P
Sbjct: 352 SMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP 411

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              TY  L+N     G+++    ++++M   G   D   Y+ +I+ 
Sbjct: 412 TIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 27/328 (8%)

Query: 21  RFFVTSAGAE-------EYARRNYANNASEYNTVVTSLTSQRR----FFLLRDVYDDMML 69
           R F T+   E       E  R     N   YNT++ +    R+    F LLR     M L
Sbjct: 211 RGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRL----MAL 266

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
            G+ P    ++ +I G  +  ++++T    ++M    ++PD   +N LI+      N  Q
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+ +  EM K  + PN  TY  L+N+   AG L+     +  M   G   +   Y  LI 
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 190 AHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247
             + +  + +A     +++E      G++    + N   N    + + E  +    E + 
Sbjct: 387 GFSQQGFLKQAYQIMKEMVE-----NGFTPTIITYNALINGHCILGRMEDASGLLQEMIE 441

Query: 248 RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
           R  GF+  +++   +    C   +  +A +  +EM+ K   SPDV      I+       
Sbjct: 442 R--GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG-ISPDVATYSSLIQGLCKQRR 498

Query: 308 IDNGHKVFEDYICSEKFPPAEL-YATLV 334
           +     +F++ + S   PP E+ Y +L+
Sbjct: 499 LGEVCDLFQEML-SLGLPPDEVTYTSLI 525



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 1/151 (0%)

Query: 44  YNTVVTSLT-SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YN ++ ++  +++   +   ++ +M+  GV P    ++ LI G      L+    F  +M
Sbjct: 170 YNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEM 229

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           + NG LP+V  YN +I    K +   +A ++   M    + PN  +Y  ++N     GQ+
Sbjct: 230 ERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQM 289

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
                I+ +M+      D+  +  LI  + N
Sbjct: 290 KETSEILEEMSKRRYVPDRVTFNTLINGYCN 320



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 20/261 (7%)

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQ-AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K+ GF+P V  YN ++    + K S + A  IF+EM +  V PN  TY  L+     AG 
Sbjct: 159 KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           L+       +M   G   +   Y  +I A+     R    A K++ L+   KG +    S
Sbjct: 219 LEMGLXFFGEMERNGCLPNVVTYNTIIDAYCK--LRKIGEAFKLLRLMAL-KGLNPNLIS 275

Query: 222 GNNAENEM-----MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA-FHACAELKDVQA 275
            N   N +     M  + E L  +    YV  R  F + +    +V  FH        QA
Sbjct: 276 YNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFH--------QA 327

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           +    EM+ K+  SP+V      I     +G+++   +  +        P    Y TL++
Sbjct: 328 LVLHAEMV-KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLID 386

Query: 336 G-AMFGYTPKGMQLAQDTLVN 355
           G +  G+  +  Q+ ++ + N
Sbjct: 387 GFSQQGFLKQAYQIMKEMVEN 407



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 72/402 (17%), Positives = 152/402 (37%), Gaps = 21/402 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E      + N   YN ++    +     +    + +M  +G  P    ++++I    K 
Sbjct: 192 KEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKL 251

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            ++ + F     M   G  P++  YN +I+  G C+     +   I EEM K    P+  
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVIN--GLCREGQMKETSEILEEMSKRRYVPDRV 309

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T+  L+N     G       +  +M   G   +   Y  LI    N + +A +   + +E
Sbjct: 310 TFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLI----NSMCKAGNL-NRAME 364

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAF 264
            ++Q +    +  +G      + G S++    L  A  + +     GF   ++T Y+   
Sbjct: 365 FLDQMRD-RGLHPNGRTYTTLIDGFSQQGF--LKQAYQIMKEMVENGFTPTIIT-YNALI 420

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
           +    L  ++    LL+ + +    PDV      I  +  + +++   ++  + +     
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480

Query: 325 PPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
           P    Y++L++G       K  +L +   +     ++ L P   +   L+ A    G   
Sbjct: 481 PDVATYSSLIQGLC-----KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLD 535

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVV 426
            A  + D M  +  +P +       NG   +    +  RL++
Sbjct: 536 KALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLL 577


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 10/295 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++ +    R     + V ++M   G       +++LI G  +   +++ F ++ +M+
Sbjct: 246 YSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEME 305

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G +PD   Y  +I+  G CK    DQA  + +EM    + PN   Y  L++     G 
Sbjct: 306 DYGLVPDGFTYGAIIN--GLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGN 363

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
            D  + IV++M+AAG   +K  Y  LI     K+ R    A++I++ + +    +   T 
Sbjct: 364 ADEAFKIVKEMSAAGVQPNKITYDNLIRGLC-KLGRM-GRASRILKQMTKIGYMADTMTY 421

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
               E  +   +KEE + L       R+GG    + T Y +  +   ++ + +    LLE
Sbjct: 422 NLVIEGHLRQHNKEEAFLLLNE---MRKGGISPNVYT-YSIIINGLCQIGESERASGLLE 477

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            +  D   P+ ++    I  Y   G      +  +        P    Y +L+ G
Sbjct: 478 QMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIG 532



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 154/388 (39%), Gaps = 27/388 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T++     Q        +  +M   GVQP +  + +LI G  K  R+       
Sbjct: 347 NVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRIL 406

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM   G++ D   YN +I    +  N ++A  +  EM+K  + PN  TY  ++N     
Sbjct: 407 KQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQI 466

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKII--ELVEQSKGW 215
           G+ +    ++  M A G   + F YA LI+ +  +     A +T  K+    L      +
Sbjct: 467 GESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCY 526

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
           +S+    +N       +   E Y+    E + +  GF     T Y    H  +   +++ 
Sbjct: 527 NSLIIGLSNVGKMDEAI---EYYD----EMLEK--GFQPNDFT-YGGLIHGYSMAGNLEK 576

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            E LL  +     +P+ +I  Q +  Y  S +++      +  +     P   LY  ++ 
Sbjct: 577 AEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIH 636

Query: 336 GAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRM--GSDLLLVAAGEKSGGYTTANYIWDLM 393
                 +  G   A  +++++  +N  +   +  GS   L++   K+     A  + D M
Sbjct: 637 ----NLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGS---LISGFCKAADMEKAVGLLDEM 689

Query: 394 QARKITPSLPAVEAYYNGLKDREVPADD 421
             + I P +    + YN L D    +DD
Sbjct: 690 AKKGIEPGI----SCYNALIDGFCKSDD 713



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 4/152 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  V+ +L+S         V   +  +G+ P   ++ SLI G  K + ++      D+M 
Sbjct: 631 YGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMA 690

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  P ++ YN LI   G CK+ D   A  IF  +    + PN  TY  L++    AG 
Sbjct: 691 KKGIEPGISCYNALID--GFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGD 748

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           +     +  +M   G   D F Y+ L    +N
Sbjct: 749 IRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSN 780



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 17/295 (5%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    + +LI    K   L+      ++M+  G   +V  YN LI    +    ++A
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +EM+ Y + P+G TY  ++N     G+ D    ++ +M+ AG   +   Y+ LI  
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR-- 248
              +     D A KI++  E S   + V+ +    +N + G+ K  L  +  A  + +  
Sbjct: 358 FMRQ--GNADEAFKIVK--EMSA--AGVQPNKITYDNLIRGLCK--LGRMGRASRILKQM 409

Query: 249 -RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
            + G+++  +T Y++         + +    LL  ++K   SP+VY     I      G+
Sbjct: 410 TKIGYMADTMT-YNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGE 468

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNI 361
            +    + E  I     P A +YA L+     GY  +G   LA +TL  M   N+
Sbjct: 469 SERASGLLEQMIADGLKPNAFVYAPLIS----GYCREGSFSLACETLKKMTRENL 519



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 149/406 (36%), Gaps = 54/406 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRR----FFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           ++  +  Y  +   YN V+     Q      F LL    ++M   G+ P    +  +I G
Sbjct: 407 KQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLL----NEMRKGGISPNVYTYSIIING 462

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVK 143
             +    +      +QM A+G  P+  VY  LIS  G C+      A    ++M +  + 
Sbjct: 463 LCQIGESERASGLLEQMIADGLKPNAFVYAPLIS--GYCREGSFSLACETLKKMTRENLT 520

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRA--- 198
           P+   Y  L+   +  G++D       +M   G   + F Y GLI  ++    + +A   
Sbjct: 521 PDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQL 580

Query: 199 ------------DDTATKIIE-------LVEQSKGWSSVETSGNNAENEMMGVSKEELYN 239
                       D    +I+E       L + S    S+   G   +N + G+    ++N
Sbjct: 581 LHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIV---IHN 637

Query: 240 LPTAEYVHRRGGFLSRL--------LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD 291
           L ++ ++      LS +          +Y        +  D++    LL+ + K    P 
Sbjct: 638 LSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPG 697

Query: 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQ 350
           +      I  +  S DI +   +F   IC    P    Y TL++G    G     + L  
Sbjct: 698 ISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYN 757

Query: 351 DTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
           + L    + + F+        +L A    SG    A +I + M AR
Sbjct: 758 EMLTEGVAPDAFVYS------VLAAGCSNSGDLQQALFITEEMIAR 797


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ SL   +      DVY +M++ G+ P    + +LI G     ++++ F   ++MK
Sbjct: 201 YNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMK 260

Query: 104 ANGFLPDVAVYNYLISVC---GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
                PDV  ++ LI      GK K  D+A+ +FEEMK   + P+  TY  L++      
Sbjct: 261 LKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNH 320

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+   A++++M   G   D + Y  L+
Sbjct: 321 HLERAIALLKEMKEHGIQPDVYSYTILL 348



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 67/169 (39%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           +R+    +  +++       +    + ++     Q    L   V+ +++  G  P     
Sbjct: 72  KRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITL 131

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           ++LI G      ++ T +F DQ+ A GF  D   Y  LI+   K   +    R+  +++ 
Sbjct: 132 NTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEG 191

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + VKP+   Y  ++N+      L     +  +M   G   D   Y  LI
Sbjct: 192 HSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI 240



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 69/157 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R +  +A   NT++  L  +         +D ++  G Q  +  + +LI G  K    +
Sbjct: 121 KRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETK 180

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +++ +   PDV +YN +I+   K K    A  ++ EM    + P+  TY  L+
Sbjct: 181 AVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI 240

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +     G++   ++++ +M       D + ++ LI A
Sbjct: 241 HGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDA 277



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 16  GALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G  G++  V  A +  EE   +N   +   YN+++  L           +  +M   G+Q
Sbjct: 279 GKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ 338

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAI 131
           P    +  L+ G  KG RL+    F   +   G   +V  YN +I+  G CK     +A+
Sbjct: 339 PDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMIN--GLCKAGLFGEAM 396

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            +  +M+     PN  T+  ++ A +   + D    I+R+M A G
Sbjct: 397 DLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARG 441



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 9/276 (3%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M+L    P   LF++++   +K  R         Q + NG  PD+   + LI+    
Sbjct: 46  FNLMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCH 105

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             +   A  +F  + K    P+  T   L+      G++         + A G  LD+  
Sbjct: 106 QAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVS 165

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
           Y  LI    N + +A +T   +  L+ + +G  SV+         +  + K +L      
Sbjct: 166 YGTLI----NGLCKAGETKA-VARLLRKLEG-HSVKPDVVMYNTIINSLCKNKLLGDACD 219

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
            Y       +S  +  Y    H    +  ++   +LL  +K    +PDVY     I    
Sbjct: 220 VYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALG 279

Query: 304 HSGD---IDNGHKVFEDYICSEKFPPAELYATLVEG 336
             G    +D    +FE+       P    Y +L++G
Sbjct: 280 KEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDG 315



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M    + P    ++SLI G  K   L+       +MK +G  PD  VY+Y I + G
Sbjct: 293 LFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPD--VYSYTILLDG 350

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK    + A   F+ +       N   Y  ++N    AG       +   M   G   +
Sbjct: 351 LCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPN 410

Query: 181 KFCYAGLITAHTNKIPRADDTATKII 206
              +  +I A + K    +D A KI+
Sbjct: 411 AITFRTIICALSEK--DENDKAEKIL 434


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMKGSRLQDTFFFRDQMKAN 105
           ++ S  +  +FF LR   D++     QP   +   + ++   K     +     +Q+  N
Sbjct: 431 LIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDN 490

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G  PD+ V+N +IS+C K    ++A+++ EE++K ++KP+G TY CL++     G     
Sbjct: 491 GHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKA 550

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++ +M  AG   +   Y  L+ ++T K  R DD A    ++V
Sbjct: 551 EEVMSEMRRAGKAPNLITYNTLLYSYT-KHGRMDDAARVFGDMV 593



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 4/192 (2%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQR--RFFLLRDVYDDMMLDGVQPTR 76
            RRF       E   R     NA  YN V+  L  +R   +  ++ ++ +M    + P  
Sbjct: 87  ARRFDEGITLFETMQREGQRGNAVTYN-VMLDLYGKRGDSWDRIQSLFQEMKDLEISPDD 145

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++++I   ++ S  Q+      +MK  G  P+   YN L+ V GK     +A  +  E
Sbjct: 146 YTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVE 205

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           M+   + PN  TY  L+ A A AG  D   A+ + + + G   D+F Y  LI+A  N+  
Sbjct: 206 MEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAF-NRAE 264

Query: 197 RADDTATKIIEL 208
           R +       E+
Sbjct: 265 RYEKALETFTEM 276



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 22/177 (12%)

Query: 39  NNASEYNTVVTSLTSQRR---------FFLLRDVY------DDMM-----LDGVQPTRDL 78
           N A  Y   + + T  R+         + +L D+Y      DDMM     +     T DL
Sbjct: 261 NRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDL 320

Query: 79  --FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++SL+        L +      +MK  G++P V  +N LI   G+C   D ++ I++ 
Sbjct: 321 VTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKG 380

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           + +  ++P   T+  L+ + A  G+      + ++M  AG  L   C+AGLI ++ N
Sbjct: 381 LLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYAN 437



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 139/334 (41%), Gaps = 20/334 (5%)

Query: 6   SIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           S+  +H+ +  AL    F +    E Y+   YA     Y ++++ L+  RRF     +++
Sbjct: 46  SVLGNHEQLPAAL--ELFESLKQDESYSLDVYA-----YTSLISILSRARRFDEGITLFE 98

Query: 66  DMMLDGVQPTRDLFHSLI--VGTMKGS--RLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
            M  +G +     ++ ++   G    S  R+Q  F    +MK     PD   YN +I+ C
Sbjct: 99  TMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLF---QEMKDLEISPDDYTYNTMITAC 155

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            +  +  +A+R+F+EMK+    PN  TY  LL+     G       ++ +M AAG   + 
Sbjct: 156 IQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNI 215

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             Y  LI A+  +    D+ A     L+  SKG    E +       +   ++ E Y   
Sbjct: 216 VTYNELIAAYA-RAGLCDEAAALKKSLL--SKGLCPDEFTYCTL---ISAFNRAERYEKA 269

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
              +   R    +  +  Y++       ++ +  M  + + +++   +PD+      ++ 
Sbjct: 270 LETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKS 329

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           + + G +     VF +   +   P  + +  L+E
Sbjct: 330 FGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIE 363



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           L  +YD+    G  P   +F+++I    K   ++      ++++     PD   YN L+S
Sbjct: 484 LNQLYDN----GHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMS 539

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           + G+     +A  +  EM++    PN  TY  LL +    G++D    +  DM AA    
Sbjct: 540 MYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRP 599

Query: 180 DKFCYAGLITAHTN 193
           D F +  L+ ++++
Sbjct: 600 DNFTFNTLVGSYSS 613


>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 703

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 13/211 (6%)

Query: 12  KSVGGALGRRFFVTSAGAE------EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           + V GAL + F V    +E      E  ++  ++N   YNT++ +     R      ++ 
Sbjct: 331 EEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTLMDAYCKSNRVEEAEGLFV 390

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M   G++PT   F+ L+    +  + +       +M+  G  P+   Y  +IS  GK K
Sbjct: 391 EMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQK 450

Query: 126 N-SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           N SD A   F +MKK  +KP   +Y  L++A + +G  +  YA   +M   G       Y
Sbjct: 451 NMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETY 510

Query: 185 AGLITAHTNKIPRADDTAT--KIIELVEQSK 213
             L+ A      RA DT T  KI +L+ + K
Sbjct: 511 TALLDA----FRRAGDTQTLMKIWKLMRREK 537



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 63/145 (43%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M   GV+   ++  +LI        + +      +++  G   +  VYN L+    K
Sbjct: 319 FEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTLMDAYCK 378

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
               ++A  +F EMK   +KP   T+  L+ A +   Q + V  ++ +M   G   +   
Sbjct: 379 SNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKS 438

Query: 184 YAGLITAHTNKIPRADDTATKIIEL 208
           Y  +I+A+  +   +D  A   +++
Sbjct: 439 YTCIISAYGKQKNMSDMAADAFLKM 463


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 1/165 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V SL          +++  M   G +P   ++ SLI G  K  R+++     D+M 
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV 357

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G+ PDV  +  +I    K  N +QA + FEEM +   KPN  TY  ++   +  G++ 
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
             + I++ M A G   D   Y  L+     K+ R D+ A  + EL
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFC-KLGRLDEAAQLLDEL 461



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 153/369 (41%), Gaps = 36/369 (9%)

Query: 62  DVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +V+ +MM  G V P R L  +++   +K  R+++      QM+  GF PD   YN +I  
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  ++ +A+++ + M      P   TY  L+N+   AG L+    + R M A+G   +
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329

Query: 181 KFCYAGLIT--AHTNKIPRADDTATKIIE------LVEQSKGWSSVETSGNNAENEMMGV 232
              Y  LI   A + ++  A     +++E      ++  +     +  SGN    E    
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN---FEQAAK 386

Query: 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD- 291
           S EE+           RGG    ++T Y       +++  V     +++ +      PD 
Sbjct: 387 SFEEMM----------RGGCKPNVVT-YTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435

Query: 292 -VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQ 350
             YI + +  C L  G +D   ++ ++       P  +LY++LV+G   G +       +
Sbjct: 436 VTYICLLDGFCKL--GRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGS------VE 487

Query: 351 DTLVNMNSRNIFLSPRMGSDLL--LVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAY 408
           +TL ++  ++   +  +   L   ++    K+G    A  I+  M +    P        
Sbjct: 488 NTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNIL 547

Query: 409 YNGL-KDRE 416
            NGL + RE
Sbjct: 548 INGLCRSRE 556



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE + R +  +   Y  + T L  Q +      ++ +M+  G  P    +  +I G +KG
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKG 661

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQT 148
            +L+D   F D+M   G  P VA Y  L+       N D+A   FE M  + E+  +   
Sbjct: 662 KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMI 721

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           Y  L++    A ++D    +  DM + G
Sbjct: 722 YDALIHGFCKALKVDAALKLFEDMISRG 749



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 6/183 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+  A +A+ Y  ++  L   ++       +D+M+  G +PT   + +L+      
Sbjct: 637 QEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHA 696

Query: 90  SRLQDTFFFRDQMKANG-FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             + + F   + M A G  +  V +Y+ LI    K    D A+++FE+M      P   T
Sbjct: 697 GNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVT 756

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
              L +    +G+ +    ++++M A G+      +A   TA  + + ++D++  K+++L
Sbjct: 757 SASLFDGLVRSGKTEKAQELLQEMAAGGSPP----HAATFTAILDGLRKSDESG-KLLKL 811

Query: 209 VEQ 211
           V++
Sbjct: 812 VQE 814



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 116/314 (36%), Gaps = 9/314 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E     Y  +   +  ++  L     F      +++MM  G +P    + ++I G  K 
Sbjct: 354 DEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKI 413

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + F     M A+G  PD   Y  L+    K    D+A ++ +E+ K    PN Q Y
Sbjct: 414 GRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 150 VCLLNACAAAGQLDPVY-AIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
             L+      G ++     +     AA   LD      +I     K  R D+       +
Sbjct: 474 SSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLC-KTGRLDEACRIFQRM 532

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           V  S+G     T+ N   N +    +  +       +     G+L   +T   +    C 
Sbjct: 533 V--SEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLC- 589

Query: 269 ELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
           ++ +V     +LE       + DV  Y  +    CY   G +D    +F++ +     P 
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCY--QGQVDRAVSLFQEMVRQGGAPD 647

Query: 327 AELYATLVEGAMFG 340
           A  Y  ++ G + G
Sbjct: 648 AAAYCCIINGLIKG 661



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  +V +L   +R    R+V+  M   G  P    ++++I G  K    Q+     D M 
Sbjct: 228 HTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNML 287

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A   +P    Y  L++   K    ++A  +F  M     +PN   Y  L++  A +G++ 
Sbjct: 288 AKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMK 347

Query: 164 PVYAIVRDMTAAG 176
              ++  +M  AG
Sbjct: 348 EACSLFDEMVEAG 360



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%)

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +   ++M   G  P+   +N LI    + + +D A+  FE MK+   KP+  T++ L++ 
Sbjct: 139 YAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDC 198

Query: 156 CAAAGQLDPVYAIVRDMTAAG 176
              AG  +  + +  +M A G
Sbjct: 199 LCKAGMDEKAFEVFHEMMAMG 219



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 8/165 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRD--VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           +A+ YN ++  L   R   + R   +  D+ + G  P    +  L +G  K   +     
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
             ++  + G+  DV  Y  L +  G C     D+A+ +F+EM +    P+   Y C++N 
Sbjct: 600 MLEEASSRGWNADVVAYTALCT--GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIING 657

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
                +L+       +M   G       Y  L+ A  H   +  A
Sbjct: 658 LIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 129/338 (38%), Gaps = 22/338 (6%)

Query: 4   LQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDV 63
           + ++ R  K  G A+    F   AG +      + ++   YN ++  L +++ +     +
Sbjct: 89  VAAVLRSLKVTGTAIS---FFRWAGEQA----GFQHDVFTYNCLMNLLVAEKNYSQCYAI 141

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           +++M+  G+ P    F+ LI    +  R  D     + MK     PD+  +  L+    K
Sbjct: 142 HEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCK 201

Query: 124 CKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
               ++A  +F EM     V P+   +  ++     A ++     +   M   G   D  
Sbjct: 202 AGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAI 261

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK----EELY 238
            Y  +I     K   A + A K+++ +  +K     E +     N +         EEL+
Sbjct: 262 AYNTMIDG-LAKAGHAQE-ALKVLDNM-LAKACVPTEVTYGILVNSLCKAGTLERAEELF 318

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
            +  A       GF    + +Y    H  A+   ++   +L + + +    PDV      
Sbjct: 319 RVMAAS------GFRPNSV-IYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           I     SG+ +   K FE+ +     P    Y T+++G
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQG 409


>gi|224034665|gb|ACN36408.1| unknown [Zea mays]
          Length = 168

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M  DGV P    +++LI G  +   +     F D M A G LPDV  Y  L++  G C  
Sbjct: 1   MRSDGVDPDLVTYNTLIFGLARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMN--GMCVK 58

Query: 127 SDQ--AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            D   A+++ EEM+    +PN +TY  LL       +LD    + + M AAG  L+   Y
Sbjct: 59  GDALGALKLLEEMQGKGCQPNERTYSTLLMGLCKNKKLDKAVEVYKSMAAAGTKLESPAY 118

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEM 229
           A  + A       AD  A ++ +   Q+K ++ V T+ +  EN +
Sbjct: 119 ASFVRALCRSGSVAD--AYEVFDYAIQTKSFAEV-TAYSELENSL 160


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++TVV +L  + +     DV D M++ GV+P    +++L+ G    S + +     D M 
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 341

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG+ P+V  YN LI+   K +  D+A  +FEEM + E+ PN  TY  L++ C   G+L 
Sbjct: 342 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXC-HVGRLQ 400

Query: 164 PVYAIVRDMTAAG 176
              A+  +M A G
Sbjct: 401 DAIALFHEMVAHG 413



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 63/149 (42%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++ S     R      V   ++  G QP    F +LI G     ++ D     D+M  
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            GF P+V  Y  LI+   K  N++ AIR+   M++   +P+   Y  ++++     Q+  
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            + +   M   G   D F Y  LI +  N
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCN 256



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           YA N   YNT++      +R      ++++M    + P    +++L+     G RLQD  
Sbjct: 345 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVG-RLQDAI 403

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +M A+G +PD+A Y  L+    K  + D+A+ + + ++   + P+ Q Y  +++  
Sbjct: 404 ALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGM 463

Query: 157 AAAGQLDPVYAIVRDMTAAG 176
             AG+L+    I  ++++ G
Sbjct: 464 CRAGELEAARDIFSNLSSKG 483



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   YN ++     Q        V+D M+ +G  P    +++LI G  K  R+  
Sbjct: 308 RGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDK 367

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             +  ++M     +P+   YN L+  C   +  D AI +F EM  +   P+  TY  LL+
Sbjct: 368 ATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQD-AIALFHEMVAHGQIPDLATYRILLD 426

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  LD   A+++  T  G+ +D
Sbjct: 427 YLCKKSHLDEAMALLK--TIEGSNMD 450



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 10/265 (3%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P+   F+ L+    K  +    F   +QM + G  PDV   N LI+          A  +
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             ++ K   +P+  T+  L+      G++     +   M   G   +   Y  LI    N
Sbjct: 127 LAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLI----N 182

Query: 194 KIPRADDT--ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
            + +  +T  A +++  +EQ      V    +  ++        E +NL    +    G 
Sbjct: 183 GLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNL----FSKMVGQ 238

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
            +S  +  Y    H+   L + + + TLL  +   +  PDV I    +      G I   
Sbjct: 239 GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEA 298

Query: 312 HKVFEDYICSEKFPPAELYATLVEG 336
           H V +  I     P    Y  L++G
Sbjct: 299 HDVVDMMIIRGVEPNVVTYNALMDG 323



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 11/160 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGT 86
           EE  ++    N   YNT++      R    L+D   ++ +M+  G  P    +  L+   
Sbjct: 373 EEMCQKELIPNTVTYNTLMHXCHVGR----LQDAIALFHEMVAHGQIPDLATYRILLDYL 428

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKP 144
            K S L +       ++ +   PD+ +Y  +I   G C+  + +A R IF  +    ++P
Sbjct: 429 CKKSHLDEAMALLKTIEGSNMDPDIQIYTIVID--GMCRAGELEAARDIFSNLSSKGLRP 486

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           N +TY  ++N     G LD    +  +M   G   D   Y
Sbjct: 487 NVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTY 526



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 86/215 (40%), Gaps = 4/215 (1%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           L R  F  S  A+   +  +  + + + T++  L  + +      ++D M+ +G QP   
Sbjct: 117 LNRLGFAFSVLAK-ILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVV 175

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            + +LI G  K             M+     PDV VY  +I    K +   +A  +F +M
Sbjct: 176 TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKM 235

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKI 195
               + P+  TY  L+++     +   V  ++  M  +    D   ++ ++ A     KI
Sbjct: 236 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 295

Query: 196 PRADDTA-TKIIELVEQSKGWSSVETSGNNAENEM 229
             A D     II  VE +    +    G+  ++EM
Sbjct: 296 TEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEM 330


>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 481

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ LI G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K   +A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+  +C   K S+    + E M K
Sbjct: 225 TLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+ +   +G LD    +++ M      T A   G  ++ FC AG
Sbjct: 285 YLAPTDNSIFMRLITSQCKSGHLDAASDVLKAMIRLSVPTEAGHYGVLIENFCKAG 340


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 163/381 (42%), Gaps = 22/381 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +LT+Q+ F  +  +   +    ++P    F++LI    +   ++D      +MK
Sbjct: 110 YTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMK 169

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQL 162
            +G  P    YN LI   G     D+++++ + M  +  VKPN +TY  L+ A      +
Sbjct: 170 ESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENI 229

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS----KGWSSV 218
              + +V  MTA+G   D   +  + TA+      A   A  I+E+   S    +   ++
Sbjct: 230 SEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAM-ILEMQRNSLKPNERTCTI 288

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAME 277
             SG   E    G  +E L       +V+R     +   L V +   +   ++ D   ++
Sbjct: 289 IISGYCRE----GKVQEAL------RFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVD 338

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
            +L+++++ +  PDV      +  +  +G ++   +++ + + S   P A  Y+ L +G 
Sbjct: 339 EVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGY 398

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK 397
           +     + M+ A++ L  M    +   P +     +++     G    A  ++D M    
Sbjct: 399 V---RAQEMEKAEEMLTVMTKSGVH--PNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFG 453

Query: 398 ITPSLPAVEAYYNGLKDREVP 418
           ++P+L   E    G  + + P
Sbjct: 454 VSPNLKTFETLIWGYAEAKQP 474


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
            +A   E        N   ++TVV +L  + +     DV D M+  GV+P    +++L+ 
Sbjct: 262 VTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMD 321

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G    S + +     D M   GF PDV  Y+ LI+   K +  ++A+ +FEEM + E+ P
Sbjct: 322 GHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIP 381

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           N  TY  L++     G+L    A+  +M   G   D   Y  L+        R  D A  
Sbjct: 382 NTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKN--RRLDEAIA 439

Query: 205 IIELVEQS 212
           +++ +E S
Sbjct: 440 LLKAIEGS 447



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 112/299 (37%), Gaps = 45/299 (15%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++ S    +R      V   ++  G QP    F++LI G     ++ +     
Sbjct: 102 NIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLF 161

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   GF P+V  Y  LI+   K  ++  AIR+   M++   +P+   Y  ++++    
Sbjct: 162 DKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKD 221

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            Q+   + +  +M   G     F Y  LI A  N              L E    W  V 
Sbjct: 222 RQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCN--------------LCE----WKHVT 263

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
              N   N  +                      +  ++    V    C E K ++A + +
Sbjct: 264 ALLNEMVNSKI----------------------MPNVVIFSTVVDALCKEGKVMEAHD-V 300

Query: 280 LEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           ++M+ K    P+V  Y  + +  C     ++D   KVF+  +C    P    Y+TL+ G
Sbjct: 301 VDMMIKRGVEPNVVTYNALMDGHCL--RSEMDEAVKVFDTMVCKGFAPDVVSYSTLING 357



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 70/154 (45%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + +A +   Y+T++      +R      ++++M    + P    + +L+ G     RLQD
Sbjct: 342 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD 401

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +M   G +PD   Y  L+    K +  D+AI + + ++   + P+ Q Y  +++
Sbjct: 402 AIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 461

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               AG+L+    +  ++++ G   + + Y  +I
Sbjct: 462 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMI 495



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 98/265 (36%), Gaps = 10/265 (3%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P+   F  L++   K            QM + G  P++   N LI+     +    A  +
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             ++ K   +PN  T+  L+      G++  V  +   M   G   +   Y  LI    N
Sbjct: 126 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLI----N 181

Query: 194 KIPRADDT--ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
            + +   T  A +++  +EQ      V    +  ++        + +NL  +E +H+   
Sbjct: 182 GLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNL-FSEMIHQG-- 238

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
            +S  +  Y+   HA   L + + +  LL  +   +  P+V I    +      G +   
Sbjct: 239 -ISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEA 297

Query: 312 HKVFEDYICSEKFPPAELYATLVEG 336
           H V +  I     P    Y  L++G
Sbjct: 298 HDVVDMMIKRGVEPNVVTYNALMDG 322



 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 5/162 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    N   Y+T++  L    R      ++ +M+  G  P    +  L+    K 
Sbjct: 372 EEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKN 431

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKPNGQ 147
            RL +       ++ +   PD+ +Y  +I   G C+  + +A R +F  +    + PN  
Sbjct: 432 RRLDEAIALLKAIEGSNMDPDIQIYTIVID--GMCRAGELEAARDLFSNLSSKGLHPNVW 489

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           TY  ++N     G L     +  +M   G   +  C   LIT
Sbjct: 490 TYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNG-CTYNLIT 530


>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
 gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
 gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
 gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 757

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 76/145 (52%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++   +  + R+ + +  ++ M+ +GV+PTR  ++ ++ G     RL+    F + MK
Sbjct: 223 YNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMK 282

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD A +N +I+   + K  D+A ++F EMK  ++ P+  +Y  ++    A  ++D
Sbjct: 283 TRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVD 342

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               I  +M ++G   +   Y+ L+
Sbjct: 343 DGLRIFEEMRSSGIEPNATTYSTLL 367


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 30/308 (9%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R V+D++   G++PT   F++LI G  K   +++ F  +  M++ G  PDV  ++ LI+ 
Sbjct: 268 RLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALIN- 326

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK    D+   +F+EM    + PNG T+  L++     G++D      + M A G  
Sbjct: 327 -GLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVR 385

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM-----GVS 233
            D   Y  LI               K+ +L E  +  + +  SG   +         G  
Sbjct: 386 PDLVTYNALING-----------LCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCC 434

Query: 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRK 288
           K+   ++ +A  + RR   +   + +  VAF A     C E +   A   L +ML    K
Sbjct: 435 KDG--DMESALEIKRR--MVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFK 490

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQL 348
            PD       I C+   GD+  G K+ ++       P    Y  L+ G       K  ++
Sbjct: 491 -PDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKM 549

Query: 349 AQDTLVNM 356
             D ++N+
Sbjct: 550 LLDAMLNV 557



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ ++  L  + R      ++D+M   G+ P    F +LI G  KG ++         M 
Sbjct: 321 FSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMML 380

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A G  PD+  YN LI+  G CK  D  +A R+  EM    +KP+  T+  L++ C   G 
Sbjct: 381 AQGVRPDLVTYNALIN--GLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGD 438

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++    I R M   G  LD   +  LI+ 
Sbjct: 439 MESALEIKRRMVEEGIELDDVAFTALISG 467



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 69/165 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   + T++       +  L    +  M+  GV+P    +++LI G  K 
Sbjct: 342 DEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKV 401

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L++     ++M A+G  PD   +  LI  C K  + + A+ I   M +  ++ +   +
Sbjct: 402 GDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAF 461

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G++     ++ DM +AG   D   Y  +I     K
Sbjct: 462 TALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKK 506



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 6/171 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+ +G++     F +LI G  +  R+ D       M + GF PD   Y  +I    K  +
Sbjct: 449 MVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGD 508

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
                ++ +EM+     P   TY  L+N     GQ+     ++  M   G   +   Y  
Sbjct: 509 VKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNI 568

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
           L+  H+      D      +++    KG  +   S     NE    SK+ L
Sbjct: 569 LLDGHSKHGSSVD------VDIFNSEKGLVTDYASYTALVNESSKTSKDHL 613



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 21/205 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L         R + ++M   G++P +  F +LI G  K   ++     + +M 
Sbjct: 391 YNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMV 450

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G   D   +  LIS  G C+      A R+  +M     KP+  TY  +++     G 
Sbjct: 451 EEGIELDDVAFTALIS--GLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGD 508

Query: 162 LDPVYAIVRDMTAAG---------AGLDKFCYAG-------LITAHTNKIPRADDTATKI 205
           +   + ++++M + G         A ++  C  G       L+ A  N +  A +  T  
Sbjct: 509 VKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLN-VGVAPNDITYN 567

Query: 206 IELVEQSKGWSSVETSGNNAENEMM 230
           I L   SK  SSV+    N+E  ++
Sbjct: 568 ILLDGHSKHGSSVDVDIFNSEKGLV 592


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 27/267 (10%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   Y  ++      R       +++ M+ +  +P     ++++ G ++  +  D  
Sbjct: 308 FTPNLQTYTVLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAI 367

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + MKA G  PDV  Y  L+    K     +A++ FEEM+    +P+   Y CL+   
Sbjct: 368 KLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGF 427

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII-ELVEQ---- 211
               ++D VY ++++M A G   D   Y  LI   TNK  R  D A +I  +++E     
Sbjct: 428 GNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNK--RMPDDAVRIYKKMIENGIKP 485

Query: 212 -SKGWSSVETSGNNAENEMMGVSKEELYNLPTA-----EYVHRRGGFLSRLLTVYHVAFH 265
            +  +S +  S     N  MGV+  +   L         Y    GG +S           
Sbjct: 486 TTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLIS---------LG 536

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDV 292
            CAE     A + L EM++K  K+P +
Sbjct: 537 RCAE-----AGKYLEEMIEKGMKAPQL 558



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 17/156 (10%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF  +A      +  +A+++  YNT++T L   R+F  +  + ++M    +  T + F 
Sbjct: 194 RFFCWAA-----QKPGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELL-TMETFT 247

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
                       +      + MK   +   V   N L+   G+ K   +A+ IFE++   
Sbjct: 248 VCFKAFAAAKERKKAVGVLELMKKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKLHG- 306

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
              PN QTY  LLN           +  VR++  AG
Sbjct: 307 RFTPNLQTYTVLLNG----------WCRVRNLMEAG 332


>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 767

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 22/250 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L       L   VY+D   DG+      F  LI G  KG ++ +      +M+
Sbjct: 228 YNRIMDALVKTGHLDLALSVYNDFREDGLVEESVTFMILIKGLCKGGKIDEMLEVLGRMR 287

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  Y  L+ +  K  N D  +R+++EMK+  V P+   Y  ++   A  G++ 
Sbjct: 288 EKLCKPDVFAYTALVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVS 347

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIELVEQSKGWSSVETS 221
             Y + ++M + G  +D+  Y  L+ +    NK+  A D    ++             +S
Sbjct: 348 EGYELFKEMKSKGHLIDRAIYGSLVESFVAGNKVGLAFDLLKDLV-------------SS 394

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHR------RGGFLSRLLTVYHVAFHACAELKDVQA 275
           G  A+  M     E L NL   E  ++      + G     L+V  +   A AE K ++ 
Sbjct: 395 GYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQEGLEPDFLSVKPLLL-AYAEAKRMEE 453

Query: 276 METLLEMLKK 285
              LLE +KK
Sbjct: 454 FFMLLEKMKK 463



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 65/330 (19%), Positives = 121/330 (36%), Gaps = 44/330 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     +   Y T++  L    R     +++ +M   G    R ++ SL+   + G
Sbjct: 319 KEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEMKSKGHLIDRAIYGSLVESFVAG 378

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++   F     + ++G+  D+ +YN LI         ++A ++F+   +  ++P+  + 
Sbjct: 379 NKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQEGLEPDFLSV 438

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             LL A A A +++  + ++  M   G                   P  DD +     LV
Sbjct: 439 KPLLLAYAEAKRMEEFFMLLEKMKKLG------------------FPVIDDLSKFFSHLV 480

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           E+     ++E   +  E   + V   E+YN+   E +H  G                   
Sbjct: 481 EKKGPEMALEIFTHLKEKSYVSV---EIYNI-FMESLHLSG------------------- 517

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
              V+   +L + +K     PD       I C +  G I    +     I     P    
Sbjct: 518 --KVEKALSLFDEIKGSDLEPDSSTYNIAILCLVDHGQIKEACECHNKIIEMSSIPSVAA 575

Query: 330 YATLVEG-AMFGYTPKGMQLAQDTLVNMNS 358
           Y  L +G    G   + M L +D L N+ S
Sbjct: 576 YNCLAKGLCNIGEIDEAMLLVRDCLGNVTS 605


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 1/165 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V SL          +++  M   G +P   ++ SLI G  K  R+++     D+M 
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV 357

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G+ PDV  +  +I    K  N +QA + FEEM +   KPN  TY  ++   +  G++ 
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
             + I++ M A G   D   Y  L+     K+ R D+ A  + EL
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFC-KLGRLDEAAQLLDEL 461



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 149/367 (40%), Gaps = 32/367 (8%)

Query: 62  DVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +V+ +MM  G V P R L  +++   +K  R+++      QM+  GF PD   YN +I  
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  ++ +A+++ + M      P   TY  L+N+   AG L+    + R M A+G   +
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329

Query: 181 KFCYAGLIT--AHTNKIPRADDTATKIIE------LVEQSKGWSSVETSGNNAENEMMGV 232
              Y  LI   A + ++  A     +++E      ++  +     +  SGN    E    
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN---FEQAAK 386

Query: 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD- 291
           S EE+           RGG    ++T Y       +++  V     +++ +      PD 
Sbjct: 387 SFEEMM----------RGGCKPNVVT-YTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435

Query: 292 -VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQ 350
             YI + +  C L  G +D   ++ ++       P  +LY++LV G   G + +  +   
Sbjct: 436 VTYICLLDGFCKL--GRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVE--KTLD 491

Query: 351 DTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYN 410
           D      +    L P +   +++     K+G    A  I+  M +    P         N
Sbjct: 492 DLFEQSKAAAETLDPGLCCSIIVGLC--KTGRLDEACRIFQRMVSEGCKPDATTYNILIN 549

Query: 411 GL-KDRE 416
           GL + RE
Sbjct: 550 GLCRSRE 556



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 116/310 (37%), Gaps = 9/310 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E     Y  +   +  ++  L     F      +++MM  G +P    + ++I G  K 
Sbjct: 354 DEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKI 413

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + F     M A+G  PD   Y  L+    K    D+A ++ +E+ K    PN Q Y
Sbjct: 414 GRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLY 473

Query: 150 VCLLNACAAAGQLDPVY-AIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
             L+N     G ++     +     AA   LD      +I     K  R D+       +
Sbjct: 474 SSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLC-KTGRLDEACRIFQRM 532

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           V  S+G     T+ N   N +    +  +       +   + G+L   +T   +    C 
Sbjct: 533 V--SEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLC- 589

Query: 269 ELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
           ++ +V     +LE       + DV  Y  +    CY   G +D    +F++ +     P 
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCY--QGQVDRAVSLFQEMVRQGGAPD 647

Query: 327 AELYATLVEG 336
           A  Y  ++ G
Sbjct: 648 AAAYCCIING 657



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 86/183 (46%), Gaps = 6/183 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+  A +A+ Y  ++  L   ++       +D+M+  G +PT   + +L+      
Sbjct: 637 QEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHA 696

Query: 90  SRLQDTFFFRDQMKANG-FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             + + F   + M A G  +  V +Y+ LI    K    D A+++FE+M      P   T
Sbjct: 697 GNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVT 756

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
              L +    +G+ +    ++++M A G+      +A   TA  + + ++D++  K+++L
Sbjct: 757 SASLFDGLVRSGKTEKAQELLQEMAAGGSPP----HAATFTAILDGLRKSDESG-KLLKL 811

Query: 209 VEQ 211
           V++
Sbjct: 812 VQE 814



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE + R +  +   Y  + T L  Q +      ++ +M+  G  P    +  +I G +K 
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKV 661

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQT 148
            +L+D   F D+M   G  P VA Y  L+       N D+A   FE M  + E+  +   
Sbjct: 662 KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMI 721

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           Y  L++    A ++D    +  DM + G
Sbjct: 722 YDALIHGFCKALKVDAALKLFEDMISRG 749



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  +V +L   +R    R+V+  M   G  P    ++++I G  K    Q+     D M 
Sbjct: 228 HTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNML 287

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A   +P    Y  L++   K    ++A  +F  M     +PN   Y  L++  A +G++ 
Sbjct: 288 AKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMK 347

Query: 164 PVYAIVRDMTAAG 176
              ++  +M  AG
Sbjct: 348 EACSLFDEMVEAG 360



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%)

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +   ++M   G  P+   +N LI    + + +D A+  FE MK+   KP+  T++ L++ 
Sbjct: 139 YAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDC 198

Query: 156 CAAAGQLDPVYAIVRDMTAAG 176
              AG  +  + +  +M A G
Sbjct: 199 LCKAGMDEKAFEVFHEMMAMG 219



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 81/417 (19%), Positives = 157/417 (37%), Gaps = 29/417 (6%)

Query: 4   LQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDV 63
           + ++ R  K  G A+    F   AG +      + ++   YN ++  L +++ +     +
Sbjct: 89  VAAVLRSLKVTGTAIS---FFRWAGEQA----GFQHDVFTYNCLMNLLVAEKNYSQCYAI 141

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           +++M+  G+ P    F+ LI    +  R  D     + MK     PD+  +  L+    K
Sbjct: 142 HEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCK 201

Query: 124 CKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
               ++A  +F EM     V P+   +  ++     A ++     +   M   G   D  
Sbjct: 202 AGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAI 261

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK----EELY 238
            Y  +I     K   A + A K+++ +  +K     E +     N +         EEL+
Sbjct: 262 AYNTMIDG-LAKAGHAQE-ALKVLDNM-LAKACVPTEVTYGILVNSLCKAGTLERAEELF 318

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
            +  A       GF    + +Y    H  A+   ++   +L + + +    PDV      
Sbjct: 319 RVMAAS------GFRPNSV-IYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMN 357
           I     SG+ +   K FE+ +     P    Y T+++G +  G      ++ +     M 
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK----GMI 427

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
           +   F  P   + + L+    K G    A  + D +     +P+L    +  NGL D
Sbjct: 428 AHGCF--PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCD 482



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 14/159 (8%)

Query: 40  NASEYNTVVTSLTS------QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +A+ YN ++  L        +R F LL D+       G  P    +  L +G  K   + 
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEKV----GYLPDAVTYTPLCIGLCKIGEVD 595

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVC 151
                 ++  + G+  DV  Y  L +  G C     D+A+ +F+EM +    P+   Y C
Sbjct: 596 RAVKMLEEASSRGWNADVVAYTALCT--GLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCC 653

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++N      +L+       +M   G       Y  L+ A
Sbjct: 654 IINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQA 692


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN VV  L    +    + + + M+  G  P    F++LI     G+RL++      Q+ 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  +N LI+   K  +   A+R+FEEMK     P+  TY  L++   + G+L 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
               +++DM + G       Y  +I     K+
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + R     +V+D M L G+      F++LI G  K  ++ D F   +QM 
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + G  P+   YN +++    CK  D  +A  I E M     + +  TY  L+N    AG+
Sbjct: 524 SEGLQPNNITYNSILT--HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581

Query: 162 LDPVYAIVRDMTAAG 176
                 ++R M   G
Sbjct: 582 TQVALKVLRGMRIKG 596



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 66/161 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        +   YNT++ +L S  +     D+  DM   G   +   ++++I G  K 
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 474

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     DQM   G   +   +N LI    K K  D A  +  +M    ++PN  TY
Sbjct: 475 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITY 534

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +L      G +     I+  MTA G  +D   Y  LI  
Sbjct: 535 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 20/223 (8%)

Query: 1   MRLLQSIYRHHKSVG------------GALGRRFFVTSA--GAEEYARRNYANNASEYNT 46
           M+LL+S+Y    + G             AL R   V +A    EE + R  A + + + T
Sbjct: 162 MKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTT 221

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++     +        V   M+  G   T+   + LI G  K  R++D   +  Q  A+G
Sbjct: 222 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 281

Query: 107 FLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F PD   YN  ++  G C+N     A+++ + M +    P+  TY  ++N     GQL+ 
Sbjct: 282 FEPDQITYNTFVN--GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKI 205
              I+  M   G   D   +  LI A    N++  A D A ++
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 66/147 (44%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           + NA  +NT++  L   ++     ++ + M+ +G+QP    ++S++    K   ++    
Sbjct: 493 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             + M ANGF  DV  Y  LI+   K   +  A+++   M+   ++P  + Y  +L +  
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLF 612

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +    ++ R+M   G   D   Y
Sbjct: 613 RRNNIRDALSLFREMAEVGEPPDALTY 639



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/390 (19%), Positives = 153/390 (39%), Gaps = 29/390 (7%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           AR ++A     Y  ++  L +     L++ +  +M  +G Q    + HS +  + +G +L
Sbjct: 66  ARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL-DSYEGQQL 124

Query: 93  QDT---FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            D              G   D  VYN+L++V  +         ++ EM    +KP+  T+
Sbjct: 125 FDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF 184

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L+ A   A Q+     ++ +M++ G   D+  +  L+     +  I  A     +++E
Sbjct: 185 NTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 244

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR--GGFLSRLLTVYHVAFH 265
           +     G S+ + + N   N    + + E        Y+ +    GF    +T Y+   +
Sbjct: 245 M-----GCSATKVTVNVLINGYCKLGRVE----DALGYIQQEIADGFEPDQIT-YNTFVN 294

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
              +   V     +++++ ++   PDV+     + C   +G ++    +    +     P
Sbjct: 295 GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354

Query: 326 PAELYATLVEGAMFG-YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
               + TL+     G    + + LA+   V        +SP + +  +L+ A  K G   
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVK------GVSPDVYTFNILINALCKVGDPH 408

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            A  +++ M+    TP     E  YN L D
Sbjct: 409 LALRLFEEMKNSGCTPD----EVTYNTLID 434



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 1/138 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++T    Q       D+ + M  +G +     + +LI G  K  R Q      
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 589

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAA 158
             M+  G  P    YN ++    +  N   A+ +F EM +    P+  TY +     C  
Sbjct: 590 RGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRG 649

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +   +  + +M   G
Sbjct: 650 GGPIKEAFDFMLEMVDKG 667


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 122/305 (40%), Gaps = 16/305 (5%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  +   +NT+++          +  V+ +M   G  P RD + SLI    +        
Sbjct: 426 YVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAM 485

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +M   G  PD++ YN ++S   +    +QA ++F EM   + KP+  +Y  LL+A 
Sbjct: 486 EIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAY 545

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           A A +LD +  +  D+ A       +    L+  + NK+    +T     EL  +     
Sbjct: 546 ANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVN-NKVNNLPETEKAFQELRRRR---C 601

Query: 217 SVETSGNNAENEMMGVSK-----EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
           S++ +  NA   + G +K     EE+ +L     ++            Y+   H  + L 
Sbjct: 602 SLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAA-------TYNSLMHMYSRLG 654

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
           D +  E++L  +K     PD Y     I  Y   G +    ++F +  CS   P    Y 
Sbjct: 655 DCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYN 714

Query: 332 TLVEG 336
             ++ 
Sbjct: 715 IFIKS 719



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 133/306 (43%), Gaps = 32/306 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           YNT+++     RR  L R+   V+D+M   G +P +  F+SL+    K  + ++      
Sbjct: 258 YNTLISCC---RRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLK 314

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M+  G  P V  YN LIS   K    ++A+ + +EM+   +KP+  TY  L++     G
Sbjct: 315 RMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVG 374

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAH------TNKIPRADD--TATKIIELVEQS 212
           ++D   A   +M   G   +   Y  LI  H      T  +   DD  +A  + ++V   
Sbjct: 375 KIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVT-- 432

Query: 213 KGWSSVET--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
             W+++ +    N  ++E+ GV KE    +  A Y+  R  ++S +      ++  C   
Sbjct: 433 --WNTLLSVFGQNGLDSEVSGVFKE----MKKAGYIPERDTYVSLI-----SSYSRCGLF 481

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
              QAME    M++     PD+      +      G  +   K+F + +  +  P    Y
Sbjct: 482 D--QAMEIYKRMIEAG-IYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSY 538

Query: 331 ATLVEG 336
           ++L+  
Sbjct: 539 SSLLHA 544



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 1/155 (0%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS-RLQDTF 96
           A +AS Y  +V++ +   RF     V+  M+  GVQP    ++ +     K S   ++  
Sbjct: 181 APDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVV 240

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D MK +G   D   YN LIS C +     +A ++F+EMK    +P+  T+  LL+  
Sbjct: 241 ALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVY 300

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             A + +    +++ M  AG       Y  LI+A+
Sbjct: 301 GKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAY 335



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 72/168 (42%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           T    +E  RR  + + +  N +V+     +    + +V   MM + +  +   ++SL+ 
Sbjct: 589 TEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMH 648

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
              +    +       ++K++G  PD   YN +I   G+     +A R+F EMK   VKP
Sbjct: 649 MYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKP 708

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +  TY   + +  A    +    +VR +   G   ++  +  ++  ++
Sbjct: 709 DIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYS 756


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN VV  L    +    + + + M+  G  P    F++LI     G+RL++      Q+ 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  +N LI+   K  +   A+R+FEEMK     P+  TY  L++   + G+L 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
               +++DM + G       Y  +I     K+
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + R     +V+D M L G+      F++LI G  K  ++ D F   +QM 
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + G  P+   YN +++    CK  D  +A  I E M     + +  TY  L+N    AG+
Sbjct: 524 SEGLQPNNITYNSILT--HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581

Query: 162 LDPVYAIVRDMTAAG 176
                 ++R M   G
Sbjct: 582 TQVALKVLRGMRIKG 596



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 20/223 (8%)

Query: 1   MRLLQSIYRHHKSVG------------GALGRRFFVTSAGA--EEYARRNYANNASEYNT 46
           M+LL+S+Y    + G             AL R   V +A    EE + R  A + + + T
Sbjct: 162 MKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTT 221

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++     +        V   M+  G   T+   + LI G  K  R++D   +  Q  A+G
Sbjct: 222 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 281

Query: 107 FLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F PD   YN  ++  G C+N     A+++ + M +    P+  TY  ++N     GQL+ 
Sbjct: 282 FEPDQITYNTFVN--GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKI 205
              I+  M   G   D   +  LI A    N++  A D A ++
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 66/161 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        +   YNT++ +L S  +     D+  DM   G   +   ++++I G  K 
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 474

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     DQM   G   +   +N LI    K K  D A  +  +M    ++PN  TY
Sbjct: 475 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITY 534

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +L      G +     I+  MTA G  +D   Y  LI  
Sbjct: 535 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 66/147 (44%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           + NA  +NT++  L   ++     ++ + M+ +G+QP    ++S++    K   ++    
Sbjct: 493 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             + M ANGF  DV  Y  LI+   K   +  A+++   M+   ++P  + Y  +L +  
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLF 612

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +    ++ R+M   G   D   Y
Sbjct: 613 RRNNIRDALSLFREMAEVGEPPDALTY 639



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/390 (19%), Positives = 153/390 (39%), Gaps = 29/390 (7%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           AR ++A     Y  ++  L +     L++ +  +M  +G Q    + HS +  + +G +L
Sbjct: 66  ARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL-DSYEGQQL 124

Query: 93  QDT---FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            D              G   D  VYN+L++V  +         ++ EM    +KP+  T+
Sbjct: 125 FDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF 184

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L+ A   A Q+     ++ +M++ G   D+  +  L+     +  I  A     +++E
Sbjct: 185 NTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 244

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR--GGFLSRLLTVYHVAFH 265
           +     G S+ + + N   N    + + E        Y+ +    GF    +T Y+   +
Sbjct: 245 M-----GCSATKVTVNVLINGYCKLGRVE----DALGYIQQEIADGFEPDQIT-YNTFVN 294

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
              +   V     +++++ ++   PDV+     + C   +G ++    +    +     P
Sbjct: 295 GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354

Query: 326 PAELYATLVEGAMFG-YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
               + TL+     G    + + LA+   V        +SP + +  +L+ A  K G   
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVK------GVSPDVYTFNILINALCKVGDPH 408

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            A  +++ M+    TP     E  YN L D
Sbjct: 409 LALRLFEEMKNSGCTPD----EVTYNTLID 434



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 1/138 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++T    Q       D+ + M  +G +     + +LI G  K  R Q      
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 589

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAA 158
             M+  G  P    YN ++    +  N   A+ +F EM +    P+  TY +     C  
Sbjct: 590 RGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRG 649

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +   +  + +M   G
Sbjct: 650 GGPIKEAFDFMLEMVDKG 667


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN VV  L    +    + + + M+  G  P    F++LI     G+RL++      Q+ 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  +N LI+   K  +   A+R+FEEMK     P+  TY  L++   + G+L 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
               +++DM + G       Y  +I     K+
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKM 475



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + R     +V+D M L G+      F++LI G  K  ++ D F   +QM 
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMI 523

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + G  P+   YN +++    CK  D  +A  I E M     + +  TY  L+N    AG+
Sbjct: 524 SEGLQPNNITYNSILT--HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581

Query: 162 LDPVYAIVRDMTAAG 176
                 ++R M   G
Sbjct: 582 TQVALKVLRGMRIKG 596



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 20/223 (8%)

Query: 1   MRLLQSIYRHHKSVG------------GALGRRFFVTSA--GAEEYARRNYANNASEYNT 46
           M+LL+S+Y    + G             AL R   V +A    EE + R  A + + + T
Sbjct: 162 MKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTT 221

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++     +        V   M+  G   T+   + LI G  K  R++D   +  Q  A+G
Sbjct: 222 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 281

Query: 107 FLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F PD   YN  ++  G C+N     A+++ + M +    P+  TY  ++N     GQL+ 
Sbjct: 282 FEPDQITYNTFVN--GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKI 205
              I+  M   G   D   +  LI A    N++  A D A ++
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 66/161 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        +   YNT++ +L S  +     D+  DM   G   +   ++++I G  K 
Sbjct: 415 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 474

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     DQM   G   +   +N LI    K K  D A  +  +M    ++PN  TY
Sbjct: 475 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITY 534

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +L      G +     I+  MTA G  +D   Y  LI  
Sbjct: 535 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 575



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 65/147 (44%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           + NA  +NT++  L   ++      + + M+ +G+QP    ++S++    K   ++    
Sbjct: 493 SRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             + M ANGF  DV  Y  LI+   K   +  A+++   M+   ++P  + Y  +L +  
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLF 612

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +    ++ R+M   G   D   Y
Sbjct: 613 RRNNIRDALSLFREMAEVGEPPDALTY 639



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/390 (19%), Positives = 153/390 (39%), Gaps = 29/390 (7%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           AR ++A     Y  ++  L +     L++ +  +M  +G Q    + HS +  + +G +L
Sbjct: 66  ARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFL-DSYEGQQL 124

Query: 93  QDT---FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            D              G   D  VYN+L++V  +         ++ EM    +KP+  T+
Sbjct: 125 FDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTF 184

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L+ A   A Q+     ++ +M++ G   D+  +  L+     +  I  A     +++E
Sbjct: 185 NTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 244

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR--GGFLSRLLTVYHVAFH 265
           +     G S+ + + N   N    + + E        Y+ +    GF    +T Y+   +
Sbjct: 245 M-----GCSATKVTVNVLINGYCKLGRVE----DALGYIQQEIADGFEPDQIT-YNTFVN 294

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
              +   V     +++++ ++   PDV+     + C   +G ++    +    +     P
Sbjct: 295 GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354

Query: 326 PAELYATLVEGAMFG-YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
               + TL+     G    + + LA+   V        +SP + +  +L+ A  K G   
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVK------GVSPDVYTFNILINALCKVGDPH 408

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            A  +++ M+    TP     E  YN L D
Sbjct: 409 LALRLFEEMKNSGCTPD----EVTYNTLID 434



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 1/138 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++T    Q       D+ + M  +G +     + +LI G  K  R Q      
Sbjct: 530 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 589

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAA 158
             M+  G  P    YN ++    +  N   A+ +F EM +    P+  TY +     C  
Sbjct: 590 RGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRG 649

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +   +  + +M   G
Sbjct: 650 GGPIKEAFDFMLEMVDKG 667



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 37/203 (18%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    + + +NT++ +L +  R     D+   + + GV P    F+ LI    K      
Sbjct: 350 RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHL 409

Query: 95  TFFFRDQMKANGFLPDVAVYNYLI-SVC-------------------------------- 121
                ++MK +G  PD   YN LI ++C                                
Sbjct: 410 ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIID 469

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK    ++A  +F++M    +  N  T+  L++      ++D  + ++  M + G   
Sbjct: 470 GLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQP 529

Query: 180 DKFCYAGLITAHTNK--IPRADD 200
           +   Y  ++T +  +  I +A D
Sbjct: 530 NNITYNSILTHYCKQGDIKKAAD 552


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            +E   R    N   YN V+++L    R     D+Y +++     PT   F  LI G +K 
Sbjct: 849  DEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKS 908

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             RL D     D M   G  P+ A+YN L++  GK  + D A   F+ M K  ++P+ ++Y
Sbjct: 909  GRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSY 968

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              L++    AG++D        +  AG   D   Y  +I  
Sbjct: 969  TILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMING 1009



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 118/309 (38%), Gaps = 24/309 (7%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           YA +   +  +V +L    R     D+ D M   GV P    +++LI G ++ +RL D  
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL 424

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M++ G  P    Y  LI   GK  +  +A+  FE+MK   + PN       L + 
Sbjct: 425 DLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSL 484

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL-------- 208
           A  G+L    A+  ++ ++G   D   Y  ++  ++ K+ + D+    + E+        
Sbjct: 485 AEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYS-KVGQVDEAIKLLSEMSKVQCEPD 543

Query: 209 -VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            +  +    ++  +G   E   M    EE+   PT              +  Y++     
Sbjct: 544 VIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPT--------------VVTYNILLAGL 589

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +   +Q    L E +     SP+       + C   + ++D   K+F         P  
Sbjct: 590 GKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDV 649

Query: 328 ELYATLVEG 336
             + T++ G
Sbjct: 650 LTFNTIIHG 658



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 11/196 (5%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +  E+     +  NA  YN ++  L          +VY  M+ +G++P+   F +L+V +
Sbjct: 180 SALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVAS 239

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   ++      ++M++ G  P++  Y   I V G+    D+A RI + M      P+ 
Sbjct: 240 GKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDV 299

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            TY  L++A   A +LD    +   M ++    DK  Y  L+           D  +   
Sbjct: 300 VTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLL-----------DKFSDCG 348

Query: 207 ELVEQSKGWSSVETSG 222
            L +  K W+ +E  G
Sbjct: 349 HLDKVEKIWTEMEADG 364



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 135/334 (40%), Gaps = 15/334 (4%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           DG  P    +  LI       +L D      +MK++   PD   Y  L+     C + D+
Sbjct: 293 DGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDK 352

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             +I+ EM+     P+  T+  L+NA   AG+++  + ++  M   G   +   Y  LI+
Sbjct: 353 VEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLIS 412

Query: 190 A--HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247
                N++  A D  + +  L  +   ++ +     + ++   G +      L T E + 
Sbjct: 413 GLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKA------LETFEKMK 466

Query: 248 RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
            RG  ++  +   + + ++ AE+  +   + +   LK    +PD       ++CY   G 
Sbjct: 467 ARG--IAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRM 367
           +D   K+  +    +  P   +  +L++     Y    ++ A      M   N  L+P +
Sbjct: 525 VDEAIKLLSEMSKVQCEPDVIVINSLIDTL---YKAGRVEEAWQMFCRMEEMN--LAPTV 579

Query: 368 GSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS 401
            +  +L+A   K G    A  +++ M     +P+
Sbjct: 580 VTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPN 613



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 70/153 (45%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            N++ YN +V             + +  M+ +G++P    +  L+       R+ D   + 
Sbjct: 929  NSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYF 988

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++K  G  PD+  YN +I+  G+ + +++A+ +F EM+   + P+  TY  L+      
Sbjct: 989  EKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIV 1048

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            G ++    I  ++   G   + F Y  LI  +T
Sbjct: 1049 GMIEEAGKIYEELQFIGLKPNVFTYNALIRGYT 1081



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++ +M  DG  P    F  L+    K  R+ + F   D M+  G LP++  YN LIS   
Sbjct: 356 IWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLL 415

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +    D A+ +F  M+   V+P   TY+ L++    +G           M A G
Sbjct: 416 RANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARG 469



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 14  VGGALGRRFF-------VTSAGAEE-------YARRNYANNASEYNTVVTSLTSQRRFFL 59
           VG  + R F+       +T AG E+          R    + S    ++  L   ++  +
Sbjct: 713 VGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSV 772

Query: 60  LRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
            R+V+     + GV+PT  +++ LI G ++   ++  +   ++MK+ G  PD   YN LI
Sbjct: 773 ARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLI 832

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              GK    ++   +++EM     KPN  TY  +++    + +LD
Sbjct: 833 DAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLD 877



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%)

Query: 71   GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
            G+ P    ++ +I G  +  R ++      +M+  G +PD+  YN LI   G     ++A
Sbjct: 995  GLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEA 1054

Query: 131  IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
             +I+EE++   +KPN  TY  L+     +G  +  Y I + M   G   +   +A L
Sbjct: 1055 GKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 117/302 (38%), Gaps = 41/302 (13%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N A     YN ++  L  + +      +++ M   G  P    F++L+    K   +   
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                +M      PDV  +N +I    K      AI +F +MKK  ++P+  T   LL  
Sbjct: 634 LKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPG 692

Query: 156 CAAAGQLDPVYAIVRDMT-AAGAGLDKFCY----AGLIT-AHTNK------------IPR 197
              +GQ++  + I  D     G+ +D+  +     G++T A T K            I +
Sbjct: 693 VIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICK 752

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL 257
            D     II+++ + K  S        A N  +  +K EL   PT              L
Sbjct: 753 DDSVLIPIIKVLCKHKKTSV-------ARNVFVKFTK-ELGVKPT--------------L 790

Query: 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            VY++      E+ +V+    L E +K    +PD +     I  +  SG I+    ++++
Sbjct: 791 KVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDE 850

Query: 318 YI 319
            +
Sbjct: 851 ML 852



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++          +  +++++M   G  P    ++SLI    K  ++ + F   D+M 
Sbjct: 793 YNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEML 852

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+   YN +IS   K    D+A+ ++  +   +  P   T+  L++    +G+LD
Sbjct: 853 TRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLD 912

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             + +   M   G   +   Y  L+  +
Sbjct: 913 DAHEMFDGMVHYGCRPNSAIYNILVNGY 940



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K  G  P + VYN LI    +  N + A  +FEEMK     P+  TY  L++A   +G++
Sbjct: 782 KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI 841

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADD 200
           + ++ +  +M   G   +   Y  +I+    +N++ +A D
Sbjct: 842 NELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMD 881


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        +M 
Sbjct: 212 YSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRML 271

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 272 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 329

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   YA LI+ 
Sbjct: 330 LDTAFEHRKRMIQENIRLDDVAYAALISG 358



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 128 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 187

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G LPDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 188 GHLDEGFRLKSAMLASGVLPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLIPNGV 245

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 305

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG   ++         + G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 306 -----SMKG---LKPDKFTYTTLIDGCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYA 353

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       I  +   GD+  G K+ ++   
Sbjct: 354 ALISGLCQEGRSVDAEKMLREMLSVGLK-PDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 412

Query: 321 SEKFPPAELYATLVEG 336
           +   P    Y  L+ G
Sbjct: 413 NGHAPSVVTYNVLMNG 428


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+    +   Y +V+  +    +    R+++++M++ G++P    + +LI G  K 
Sbjct: 371 DEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKA 430

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             +++ F   +QM   G  P+V  Y  L    G CKN   D A  +  EM +  ++PN  
Sbjct: 431 GEMKEAFSVHNQMVQKGLTPNVVTYTALAD--GLCKNGEIDVANELLHEMSRKGLQPNVY 488

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           TY  ++N     G ++    ++ +M  AG   D   Y  L+ A+
Sbjct: 489 TYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAY 532



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 147/388 (37%), Gaps = 59/388 (15%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D++   G++P   +++++I+   K   + +       M+  G  PD  VY  +IS   K 
Sbjct: 301 DELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKL 360

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            N   A ++F+EM++ ++ P+  TY  +++    +G++     +  +M   G   D+  Y
Sbjct: 361 GNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTY 420

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
             LI           D   K  E+ E             +  N+M+              
Sbjct: 421 TALI-----------DGYCKAGEMKE-----------AFSVHNQMV-------------- 444

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
               + G    ++T   +A   C   +   A E L EM +K  + P+VY     +     
Sbjct: 445 ----QKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQ-PNVYTYNTIVNGLCK 499

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQL--------AQDTLVN 355
            G+I+   K+ E+   +  +P    Y TL++     G   K  +L         Q TLV 
Sbjct: 500 IGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVT 559

Query: 356 MNS-RNIFLSPRMGSD-LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLK 413
            N   N F    M  D   L+    + G    A     LM+   I  ++ A    Y  + 
Sbjct: 560 FNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMH 619

Query: 414 DREVPADDPRLVVVSRAYDNLLRGRPGA 441
           DR V  D       S  Y+ L++G   A
Sbjct: 620 DRGVMPD-------SNTYNILIKGHCKA 640



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ +N+++     +       ++Y  M   GV P  + ++ LI G  K   +++ +F  
Sbjct: 591 NATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLH 650

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
            +M   G+    A Y+ LI    K K   +A ++FEEM+K+
Sbjct: 651 KEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKH 691



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 28/146 (19%), Positives = 57/146 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           +  ++    N   Y  +   L       +  ++  +M   G+QP    +++++ G  K  
Sbjct: 442 QMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIG 501

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            ++ T    ++M   GF PD   Y  L+    K     +A  +   M    ++P   T+ 
Sbjct: 502 NIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFN 561

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            L+N    +G L+    ++  M   G
Sbjct: 562 VLMNGFCMSGMLEDGERLIEWMLEKG 587



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 48/122 (39%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+   +QPT   F+ L+ G      L+D     + M   G +P+   +N L+       N
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNN 607

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
                 I++ M    V P+  TY  L+     A  +   + + ++M   G  +    Y  
Sbjct: 608 MRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDA 667

Query: 187 LI 188
           LI
Sbjct: 668 LI 669


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NY      YN ++ SL   +++ L+  VY  M+ DG  P    ++ L+    +  ++   
Sbjct: 214 NYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRF 273

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M  +GF PD   YN L+ + GK      A+     MK+  + P+   Y  L++ 
Sbjct: 274 DRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDG 333

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            + AG L+     + +M  AG   D  CY  +IT + 
Sbjct: 334 LSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYV 370



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 10/239 (4%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M  +GF      +N LI  CG+   + QA+  F + K +  +P   +Y  +LN+    
Sbjct: 173 DEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGV 232

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIELVEQSKGWSS 217
            Q   +  + + M   G   D   Y  L+  +    K+ R D    ++ +  E ++   S
Sbjct: 233 KQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFD----RLFD--EMARDGFS 286

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
            ++   N    ++G   + L  L T  ++   G  +   +  Y       +   +++A +
Sbjct: 287 PDSYTYNILLHILGKGNKPLAALTTLNHMKEVG--IDPSVLHYTTLIDGLSRAGNLEACK 344

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             L+ + K    PDV      I  Y+ SG++D   ++F +     + P    Y +++ G
Sbjct: 345 YFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRG 403



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 1/182 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E AR  ++ ++  YN ++  L    +        + M   G+ P+   + +LI G  + 
Sbjct: 278 DEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRA 337

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+   +F D+M   G  PDV  Y  +I+        D+A  +F EM      PN  TY
Sbjct: 338 GNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTY 397

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++     AG+      ++++M + G   +   Y+ L++ +  K  +  +    I E+V
Sbjct: 398 NSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVS-YLRKAGKLSEARKVIREMV 456

Query: 210 EQ 211
           ++
Sbjct: 457 KK 458



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D+M  DG  P    ++ L+    KG++        + MK  G  P V  Y  LI    
Sbjct: 276 LFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLS 335

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +  N +      +EM K   +P+   Y  ++     +G+LD    + R+MT  G   + F
Sbjct: 336 RAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVF 395

Query: 183 CYAGLI 188
            Y  +I
Sbjct: 396 TYNSMI 401



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L+        +   D+M+  G +P    +  +I G +    L        +M 
Sbjct: 327 YTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMT 386

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G LP+V  YN +I   G C   +  +A  + +EM+     PN   Y  L++    AG+
Sbjct: 387 VKGQLPNVFTYNSMIR--GLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGK 444

Query: 162 LDPVYAIVRDMTAAG 176
           L     ++R+M   G
Sbjct: 445 LSEARKVIREMVKKG 459


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        +M 
Sbjct: 211 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRML 270

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 271 SQSLLPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGD 328

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 329 LDTAFEHRKRMIQENIXLDDVAYTALISG 357



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 123/283 (43%), Gaps = 20/283 (7%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V+D +   G++P+   +++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+ 
Sbjct: 158 QSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN- 216

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK S  D A  +F+EM    + PNG T+  L++     G++D    I + M +    
Sbjct: 217 -GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLL 275

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
            D   Y  LI     K       A  +I+ +   KG    + +     +   G  KE   
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQ--AHHLIDEMSM-KGLKPDKITYTTLID---GCCKEG-- 327

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVY 293
           +L TA + HR+   +   + +  VA+ A     C E + V A + L EML    K P+  
Sbjct: 328 DLDTA-FEHRK-RMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK-PNXR 384

Query: 294 IVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                I  +   GD+  G K+ ++       P    Y  L+ G
Sbjct: 385 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +        + D+M + G++P +  + +LI G  K   L   F  R +M 
Sbjct: 281 YNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMI 340

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + N  L DVA Y  LIS +C + ++ D A ++  EM    +KPN +TY  ++N     G 
Sbjct: 341 QENIXLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPNXRTYTMIINEFCKKGD 398

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 399 VWKGSKLLKEMQRDG 413



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 63/165 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   + P    +++LI G  K 
Sbjct: 232 DEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 291

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+      D+M   G  PD   Y  LI  C K  + D A    + M +  +  +   Y
Sbjct: 292 GDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAY 351

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M + G   +   Y  +I     K
Sbjct: 352 TALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKK 396


>gi|298712550|emb|CBJ26818.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 971

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +  DM   GV P   ++  ++       R +D      +M   G  P++  Y+  IS C 
Sbjct: 726 ILRDMEAAGVTPDGVVYTLVMAACGGAGRWRDAVSLVREMTEKGVRPNLINYSVAISACA 785

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    + A+ +  EMK   + PN  TY   + AC+A+GQ      ++RDM+  G    + 
Sbjct: 786 KAGRHEPALELLAEMKDAGINPNTVTYSSAILACSASGQCGDAVDLLRDMSKRGMSPSRT 845

Query: 183 CYAGLITA 190
           CYA  ITA
Sbjct: 846 CYAPAITA 853



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 59/150 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  V+ +     R+     +  +M   GV+P    +   I    K  R +       +MK
Sbjct: 742 YTLVMAACGGAGRWRDAVSLVREMTEKGVRPNLINYSVAISACAKAGRHEPALELLAEMK 801

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+   Y+  I  C        A+ +  +M K  + P+   Y   + ACA   + D
Sbjct: 802 DAGINPNTVTYSSAILACSASGQCGDAVDLLRDMSKRGMSPSRTCYAPAITACARGSEPD 861

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
              +++R+M   G   D  CYA  ++A  N
Sbjct: 862 IALSLLREMPTEGLVPDAVCYAAALSALRN 891



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M A+G  PD A +   +S C   +   QA+ I  +M+   V P+G  Y  ++ AC  AG
Sbjct: 694 EMSASGLRPDEACFTNALSACRDRRQGKQALAILRDMEAAGVTPDGVVYTLVMAACGGAG 753

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +     ++VR+MT  G   +   Y+  I+A
Sbjct: 754 RWRDAVSLVREMTEKGVRPNLINYSVAISA 783



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y++ + + ++  +     D+  DM   G+ P+R  +   I    +GS         
Sbjct: 808 NTVTYSSAILACSASGQCGDAVDLLRDMSKRGMSPSRTCYAPAITACARGSEPDIALSLL 867

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            +M   G +PD   Y   +S      + D ++ +  EM+   + P    YV  + AC
Sbjct: 868 REMPTEGLVPDAVCYAAALSALR--NDCDNSVAVLREMRDGGLAPAPGLYVEAVRAC 922



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   I+ CG     +QA+R+  EM +  V+ +  TY   ++  A   +L   + ++R+M
Sbjct: 509 VYAATITACGNNGQWEQALRLLREMSEAGVEADALTYSAAISVLAREARLPEAFRLIREM 568

Query: 173 TAAG-AGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           +  G A +    Y  ++  +  K P A   A +++ LV
Sbjct: 569 SERGLATVSGSAYDSVVGVY-GKTPEA---AAELVALV 602


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 6/181 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   Y+++V +L   RR      ++D+M+  G  P R +F+ LI+G  +  
Sbjct: 105 EMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAG 164

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           +++D      QM  +G  P+V VYN L+   G C +   +QA  +F EMK +   P+  T
Sbjct: 165 KVKDASERFKQMPKHGCQPNVPVYNVLLH--GLCSSGQLEQANTLFAEMKSHSCSPDVVT 222

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKII 206
           Y  LL+A   A +++    +   M AAG   +   ++ LI     T ++ +A +    ++
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282

Query: 207 E 207
           E
Sbjct: 283 E 283



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 111/302 (36%), Gaps = 41/302 (13%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +N A N   Y++++ SL  + +      V ++MM  G  P    F+ ++ G  + + ++ 
Sbjct: 4   KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEK 63

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  M  +G+ PD   Y+ LI    K    D++++I  EM      P+ Q Y  L+ 
Sbjct: 64  AREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVR 123

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           A A A ++D   ++  +M   G   D+  +  LI             A K+ +  E+ K 
Sbjct: 124 ALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQ--------AGKVKDASERFKQ 175

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
                   N                                 + VY+V  H       ++
Sbjct: 176 MPKHGCQPN---------------------------------VPVYNVLLHGLCSSGQLE 202

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
              TL   +K    SPDV      +     +  ++ G K+FE    +   P    ++TL+
Sbjct: 203 QANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLI 262

Query: 335 EG 336
            G
Sbjct: 263 HG 264



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 120/301 (39%), Gaps = 15/301 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L S  +      ++ +M      P    +++L+    K  R+++     
Sbjct: 184 NVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLF 243

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           + M+A G++P+V  ++ LI   G C+  +  +A+ +F  M +   KPN  TY  L++   
Sbjct: 244 EAMRAAGYVPNVITFSTLIH--GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLC 301

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            A ++     +   MT A    D   Y  LI  +  +   + D A K+   +    G   
Sbjct: 302 RAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR--GSMDEAEKLYREMSGGAGLQP 359

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
              + N   +    + K    N   AE +  +G  L+     Y +     A L     ++
Sbjct: 360 TIVTFNTLIDGFCKLGKLGRANELVAE-MGTKG--LAADSCTYRILI---AGLSRATKLD 413

Query: 278 TLLEMLKKDRKSP---DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
             LE+ K+ R+     D    +  +     +G+ID  + VFE    S   P  E +  L 
Sbjct: 414 EALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILS 473

Query: 335 E 335
           E
Sbjct: 474 E 474



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 13/177 (7%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N   ++T++  L          +V+  M+  G +P +  + +LI G  +  ++    
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAR 310

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMK-KYEVKPNGQTYVCLL 153
              ++M      PD   YN LI+  G CK    D+A +++ EM     ++P   T+  L+
Sbjct: 311 ELFEKMTQACIPPDAVAYNSLIA--GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLI 368

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           +     G+L     +V +M   G   D   Y  LI   +         ATK+ E +E
Sbjct: 369 DGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSR--------ATKLDEALE 417



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++       +     ++  +M   G+      +  LI G  + ++L +      QM+
Sbjct: 364 FNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMR 423

Query: 104 ANGFLPD-VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              FL D V+  +++  +C K  N DQA  +FE  +K    PN +T+  L  +    G++
Sbjct: 424 EKKFLLDPVSCVSFVGGLC-KTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRV 482

Query: 163 DPVYAIV-----RDMTA 174
           +    ++     RD+TA
Sbjct: 483 EDAQKLMEPAKARDITA 499


>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 475

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NY      YN ++ SL + R + L+  V+  M+++G  P    ++ L+    +  +L   
Sbjct: 219 NYRPFKHSYNAILLSLLAIREYKLIEWVHQQMLVEGYCPDTLTYNILMCAKYRLGKLHHF 278

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M  +GF PD   YN L+ V GK      A+++   MK+    P+   +  L++ 
Sbjct: 279 HRLLDEMGRSGFSPDFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDG 338

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            + AG LD       +M   G   D  CY  +IT +
Sbjct: 339 LSRAGNLDACNYFFDEMIKNGFVPDVVCYTVMITGY 374



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R  ++ +   YN ++  L    +      + + M   G  P+   F +LI G  + 
Sbjct: 283 DEMGRSGFSPDFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSRA 342

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L    +F D+M  NGF+PDV  Y  +I+        ++A  IF+EM      PN  TY
Sbjct: 343 GNLDACNYFFDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVFTY 402

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++     AG+ +    ++++M + G   +   Y  L+    N  K+  A +   ++ E
Sbjct: 403 NSMIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGKLSEAREVIKEMAE 462



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 58/134 (43%)

Query: 43  EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
            + T++  L+           +D+M+ +G  P    +  +I G +    L+      D+M
Sbjct: 331 HFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEM 390

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            A G LP+V  YN +I         ++A  + +EM     KPN   Y  L+N    AG+L
Sbjct: 391 IARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGKL 450

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 451 SEAREVIKEMAENG 464



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 60/152 (39%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  +   YN ++ +     +      + D+M   G  P    ++ L+    KG++     
Sbjct: 255 YCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSPDFHTYNILLHVLGKGNKPIAAL 314

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + MK  GF P +  +  LI    +  N D     F+EM K    P+   Y  ++   
Sbjct: 315 KLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCYTVMITGY 374

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             AG+L+    I  +M A G   + F Y  +I
Sbjct: 375 IVAGELEKAREIFDEMIARGQLPNVFTYNSMI 406


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 83/168 (49%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ ++ G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +   +PDV  YN +++   + K  ++A + F EMK   ++P   TY  L+    +  ++D
Sbjct: 178 SREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
               +V +M   G   +   Y+ L+    N   +  +  + + E+VE+
Sbjct: 238 DALRLVEEMKGFGMKPNAITYSTLLPGLCNA-EKMSEARSILKEMVEK 284



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R    +   YNT+V      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   R+ D     ++MK  G  P+   Y+ L+      +   +A  I +EM +K
Sbjct: 225 TLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L++    AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 915

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N+ ++ L+   R    + + ++M   G++P    F++ + G       ++T    
Sbjct: 432 NTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTASLS 491

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+MK+ G   DV  Y   +S C K  +   A+++ +EM++  V+PN   Y   L+AC  A
Sbjct: 492 DEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRA 551

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+      ++R M   G   D   Y G I A
Sbjct: 552 GKPKVAEKLLRKMGETGVVRDATSYTGAIVA 582



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  +M  +G  P    + S I    +    +        M+ +G  P+  V N  +  C
Sbjct: 348 ELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDAC 407

Query: 122 GKCKNSDQAIRIFEEMKK-YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           GK    D+A+++   M+K Y VKPN  T+   ++  + AG+     A++ +M+  G   D
Sbjct: 408 GKGDAPDEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPD 467

Query: 181 KFCY 184
            F +
Sbjct: 468 NFSF 471



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +   IV   +         + + M   G  P+   YNY ++ CG+  N  QA  +  EM+
Sbjct: 576 YTGAIVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLLNEMR 635

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              V PN  +Y   + A   AG+L  V +++ +M   G   D+  Y
Sbjct: 636 GQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTY 681



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 1/162 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R   + N+  Y + +T+            +  DM  DGV P   + ++ +    KG
Sbjct: 351 QEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKG 410

Query: 90  SRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
               +     R   KA G  P+   +N  IS   +   + +A  +  EM +  +KP+  +
Sbjct: 411 DAPDEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFS 470

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +   +   AAAG      ++  +M + G G+D   Y   ++A
Sbjct: 471 FNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSA 512



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 65/166 (39%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           T++ ++E   R    +   Y T V++            +  +M   GV+P   +++S + 
Sbjct: 487 TASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALD 546

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
              +  + +       +M   G + D   Y   I  C +  + D+A+   E M K  + P
Sbjct: 547 ACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAP 606

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              TY   + AC  +G       ++ +M   G   ++  Y+  + A
Sbjct: 607 EAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPNRISYSAAMFA 652



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 49/114 (42%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV+P    F+S I G  +  R ++     ++M   G  PD   +N  +       +    
Sbjct: 428 GVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNT 487

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
             + +EMK   +  +  +Y   ++ACA AG +     ++++M  AG   +   Y
Sbjct: 488 ASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVY 541


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+ +G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLIN--GLCKESKMDDANXLFDEMLDKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATK- 204
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   + 
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
           I++ +   K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 IMKGLXPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLNVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M++ G+ P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLNVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNXLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA +Y  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFKYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMKGSRLQDTFFFRDQMKAN 105
           ++ S  +  +FF LR   D++     QP   +   + ++   K     +     +Q+  N
Sbjct: 570 LIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDN 629

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G  PD+ V+N +IS+C K    ++A+++ EE++K ++KP+G TY CL++     G     
Sbjct: 630 GHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKA 689

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++ +M  AG   +   Y  L+ ++T K  R DD A    ++V
Sbjct: 690 EEVMSEMRRAGKAPNLITYNTLLYSYT-KHGRMDDAARVFGDMV 732



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 4/192 (2%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQR--RFFLLRDVYDDMMLDGVQPTR 76
            RRF       E   R     NA  YN V+  L  +R   +  ++ ++ +M    + P  
Sbjct: 226 ARRFDEGITLFETMQREGQRGNAVTYN-VMLDLYGKRGDSWDRIQSLFQEMKDLEISPDD 284

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++++I   ++ S  Q+      +MK  G  P+   YN L+ V GK     +A  +  E
Sbjct: 285 YTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVE 344

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           M+   + PN  TY  L+ A A AG  D   A+ + + + G   D+F Y  LI+A  N+  
Sbjct: 345 MEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAF-NRAE 403

Query: 197 RADDTATKIIEL 208
           R +       E+
Sbjct: 404 RYEKALETFTEM 415



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 22/177 (12%)

Query: 39  NNASEYNTVVTSLTSQRR---------FFLLRDVY------DDMM-----LDGVQPTRDL 78
           N A  Y   + + T  R+         + +L D+Y      DDMM     +     T DL
Sbjct: 400 NRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDL 459

Query: 79  --FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++SL+        L +      +MK  G++P V  +N LI   G+C   D ++ I++ 
Sbjct: 460 VTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKG 519

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           + +  ++P   T+  L+ + A  G+      + ++M  AG  L   C+AGLI ++ N
Sbjct: 520 LLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYAN 576



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 139/334 (41%), Gaps = 20/334 (5%)

Query: 6   SIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           S+  +H+ +  AL    F +    E Y+   YA     Y ++++ L+  RRF     +++
Sbjct: 185 SVLGNHEQLPAAL--ELFESLKQDESYSLDVYA-----YTSLISILSRARRFDEGITLFE 237

Query: 66  DMMLDGVQPTRDLFHSLI--VGTMKGS--RLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
            M  +G +     ++ ++   G    S  R+Q  F    +MK     PD   YN +I+ C
Sbjct: 238 TMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLF---QEMKDLEISPDDYTYNTMITAC 294

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            +  +  +A+R+F+EMK+    PN  TY  LL+     G       ++ +M AAG   + 
Sbjct: 295 IQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNI 354

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             Y  LI A+  +    D+ A     L+  SKG    E +       +   ++ E Y   
Sbjct: 355 VTYNELIAAYA-RAGLCDEAAALKKSLL--SKGLCPDEFTYCTL---ISAFNRAERYEKA 408

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
              +   R    +  +  Y++       ++ +  M  + + +++   +PD+      ++ 
Sbjct: 409 LETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKS 468

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           + + G +     VF +   +   P  + +  L+E
Sbjct: 469 FGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIE 502



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           L  +YD+    G  P   +F+++I    K   ++      ++++     PD   YN L+S
Sbjct: 623 LNQLYDN----GHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMS 678

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           + G+     +A  +  EM++    PN  TY  LL +    G++D    +  DM AA    
Sbjct: 679 MYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRP 738

Query: 180 DKFCYAGLITAHTN 193
           D F +  L+ ++++
Sbjct: 739 DNFTFNTLVGSYSS 752


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  +      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKKMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 481

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ LI G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRXXFNVLIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  Q+D
Sbjct: 178 SREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +  +M   G   +   Y+ L+    N
Sbjct: 238 DALRLXEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   ++ D     ++MK  G  P+   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYVSVDQVDDALRLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L+ +   +G LD    +++ M      T A   G  ++ FC  G
Sbjct: 285 YLAPTDNSIFMRLITSQCTSGHLDAASDVLKAMIRLSVPTEAGHYGVLIENFCKXG 340


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 158/400 (39%), Gaps = 39/400 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   + Y  +   YN ++ +L    +      V+ DM L    P    +  +I  T K  
Sbjct: 264 EMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMG 323

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +++    ++M   G  P++  YN +I    K    D+AI +F  M K   +PN  TY 
Sbjct: 324 RAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYS 383

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-----TAHTNKIPRA------- 198
            +LN   A GQL  +  +   +  +   ++K  YA L+       H+++  R        
Sbjct: 384 IILNVLVAEGQLGRLDEV---LEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSF 440

Query: 199 -----DDTATKIIE-------LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
                 D    ++E        VE  +  S V   G + +  M       L  L    ++
Sbjct: 441 HDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHL 500

Query: 247 H------RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
           H      ++ G    + T Y++   +   +  V+    + E L+     PD+      I 
Sbjct: 501 HDLYEKMKQDGPFPDIFT-YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLIN 559

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRN 360
           C   +GD+D  H  F +       P    Y+TL+E   FG T K +++A+     M ++ 
Sbjct: 560 CLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIE--CFGKTDK-VEMARSLFDRMITQG 616

Query: 361 IFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
               P + +  +L+   E++G       ++  ++ + +TP
Sbjct: 617 C--CPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTP 654



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 122/318 (38%), Gaps = 40/318 (12%)

Query: 48  VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107
           + S  S R F    +VY +M   G Q     ++ L+    K  +L  ++     MK    
Sbjct: 250 IRSRDSDRAF----NVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHC 305

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
            PD   Y  +I + GK   +++++ +FEEM      PN   Y  ++ A + +G +D    
Sbjct: 306 NPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAIL 365

Query: 168 IVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIELVEQS------------- 212
           +  +M       ++F Y+ ++       ++ R D+      + + +S             
Sbjct: 366 LFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLG 425

Query: 213 ----------KGWSSVETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGFLSRL 256
                       WS  +    +A   M+      G + E +  L     VH +G  +S  
Sbjct: 426 HSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSK---VHEKG--ISTD 480

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
             +Y+       +LK V  +  L E +K+D   PD++     I      G +    +VFE
Sbjct: 481 TMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFE 540

Query: 317 DYICSEKFPPAELYATLV 334
           +   S+  P    Y +L+
Sbjct: 541 ELESSDCKPDIISYNSLI 558



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++SL    +     +V++++     +P    ++SLI    K   + +      +M+
Sbjct: 519 YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQ 578

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI   GK    + A  +F+ M      PN  TY  LL+    AG+  
Sbjct: 579 DKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTA 638

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   +   G   D   YA L
Sbjct: 639 ETVDLYAKLREQGLTPDSITYAIL 662


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++           R ++ +M   G  P+   ++ +I G  K   +++   FR
Sbjct: 421 NYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFR 480

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+  GF+PDV  Y Y   V G C N   D A+++FEEMK+   +PN   Y  L++  A
Sbjct: 481 KEMEKKGFVPDV--YTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLA 538

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTN 193
             G+ +  + +  DM  AG   D   Y+ L+ + HT+
Sbjct: 539 KEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTD 575



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 161/411 (39%), Gaps = 60/411 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  R   + NA  YN+++     Q+    ++++ + M  +G++ T   +  L+      
Sbjct: 201 DDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTA 260

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       ++MKAN  + DV +Y  +I+   +  N  +A ++ +E     V+PN +TY
Sbjct: 261 RDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTY 320

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+N     GQ++    ++ DM   G GL++  +  +I  +  K     D A KI    
Sbjct: 321 GVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRK--GMVDDALKI---- 374

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA- 268
                          A  E MGV                        L +Y     AC  
Sbjct: 375 --------------KAAMEKMGVE-----------------------LDIYTYNTLACGL 397

Query: 269 -ELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
             +  +   +TLL ++ +    P+   Y  + +I C    GD+    ++F +       P
Sbjct: 398 CRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHC--KDGDMVEARRLFREMAEKGATP 455

Query: 326 PAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTT 385
               Y  +++    GYT KG     +       +  F+ P + +   LV     +G    
Sbjct: 456 SVVTYNVMID----GYTKKGSIREAERFRKEMEKKGFV-PDVYTYASLVHGHCVNGKVDV 510

Query: 386 ANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLR 436
           A  +++ M+ R   P++ A  A  +GL      A + R     + YD++L+
Sbjct: 511 ALKLFEEMKQRGTEPNVVAYTALISGL------AKEGRSEAAFQLYDDMLK 555



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 99/271 (36%), Gaps = 45/271 (16%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           DM   GV   + +F+++I G  +   + D    +  M+  G   D+  YN L   CG C+
Sbjct: 342 DMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTL--ACGLCR 399

Query: 126 NS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
            +  D+A  +   M +  V PN  TY  L++     G +     + R+M   GA      
Sbjct: 400 VNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVT 459

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
           Y  +I  +T K                           G+  E E     ++E+      
Sbjct: 460 YNVMIDGYTKK---------------------------GSIREAERF---RKEM------ 483

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
                + GF+  + T   +    C   K V     L E +K+    P+V      I    
Sbjct: 484 ----EKKGFVPDVYTYASLVHGHCVNGK-VDVALKLFEEMKQRGTEPNVVAYTALISGLA 538

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
             G  +   ++++D + +   P   LY+ LV
Sbjct: 539 KEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 569



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 78  LFHSLIV-GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
           L  S++V G  K  R+ D     D M  +G   +   YN L+    + K+  +   I E 
Sbjct: 178 LAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI 237

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           M+   ++    TY  L+++ + A  +  V A+  +M A     D + Y  +I A+
Sbjct: 238 MENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAY 292


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 134/341 (39%), Gaps = 52/341 (15%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A  EE A R    +A  YN V++ L  + +    R +++ M+   + P    +++LI G 
Sbjct: 135 ATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGL 194

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKP 144
            K  R++  +    +M   G++P    YN LI   G CK  D   A  +F++M +    P
Sbjct: 195 CKAWRIETAYELFKEMAGKGYVPTEVSYNTLID--GFCKKKDLVAAKDVFDKMVRSNCVP 252

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           N  TY  L++  + +G++     ++  M   G   +   Y+ LI     K+ R D+    
Sbjct: 253 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC-KVRRVDEAHKL 311

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
           + ++V Q                   G++       PT              +  Y++  
Sbjct: 312 LEQMVTQ-------------------GIA-------PT--------------VVTYNILL 331

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
           ++      ++    L   + + R  P V      +R   H   +D  H+++ + I     
Sbjct: 332 NSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCP 391

Query: 325 PPAELYATLVEGAMFGYTPKG-MQLAQDTLVNM--NSRNIF 362
           P A  Y TL     +G T  G +  AQ+ +  M    RN F
Sbjct: 392 PDAITYDTLA----WGLTRAGKVHEAQELMEKMKLTKRNPF 428



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 123/347 (35%), Gaps = 49/347 (14%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M L  V P    F+++  G  K  RL+        M   G+    + Y  LIS   K  N
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A ++   M+    K     Y  ++N      +++    ++  M A  A  D   Y G
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTY-G 118

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
            I     K  R DD    + E+  +                   G+  +           
Sbjct: 119 PIVERLCKTKRIDDALATVEEMATR-------------------GIKPDAF--------- 150

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
                       +Y+       + + V+    L E + K R +P+V      I     + 
Sbjct: 151 ------------IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAW 198

Query: 307 DIDNGHKVFEDYICSEKFPPAEL-YATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSP 365
            I+  +++F++ +  + + P E+ Y TL++G       K +  A+D    M   N    P
Sbjct: 199 RIETAYELFKE-MAGKGYVPTEVSYNTLIDGFC---KKKDLVAAKDVFDKMVRSNCV--P 252

Query: 366 RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
            + +   L+    KSG    A  + D M  + +TP++       +G 
Sbjct: 253 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 299



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 1/152 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A R     A+ +NTV        R   +++VY  M+  G       +  LI    K    
Sbjct: 2   ALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNF 61

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            + +     M+   F      Y+ +I+   K    ++A  + E+M +Y   P+  TY  +
Sbjct: 62  DEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARY-APPDALTYGPI 120

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +       ++D   A V +M   G   D F Y
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIY 152


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 59/379 (15%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ DM     +P    +  +I  T K  +  ++     +M   G+ P++  YN +I    
Sbjct: 314 VFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALA 373

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
             +  D+ I +F +M +   +PNG T+  +LN   A GQL  +  +V     +   ++K 
Sbjct: 374 NNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVE---VSNKFMNKS 430

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM------GVSKEE 236
            YA L+    +K+  A + A +++ L      WS  +    +A   M+      G + E 
Sbjct: 431 IYAYLVRT-LSKLGHASE-AHRLLHL---QYDWSFHDEGDRDAYMSMLESLCDAGKTTEA 485

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY--- 293
           L  L     +H +   +S    +Y+    A  +LK    +  L E +K+D  SPD++   
Sbjct: 486 LDLLSK---IHEKR--ISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYN 540

Query: 294 ------------------------------IVMQN--IRCYLHSGDIDNGHKVFEDYICS 321
                                         I+  N  I C   +GDID  H  F++    
Sbjct: 541 ILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREE 600

Query: 322 EKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
              P    Y+TL+E   FG T K +++A      M +     SP + +  +L+   E+SG
Sbjct: 601 GLSPDVVTYSTLIE--CFGKTDK-VEMACRLFDEMLAEGC--SPNIVTYNILLDCLERSG 655

Query: 382 GYTTANYIWDLMQARKITP 400
               A  ++  ++ + +TP
Sbjct: 656 RTAEAVDLYAKLKQQGLTP 674



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 72/145 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+++L   ++   L D+Y+ M  DG  P    ++ LI    +  R+++     ++++
Sbjct: 504 YNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELE 563

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   PD+  +N LI+  GK  + D+A   F+EM++  + P+  TY  L+       +++
Sbjct: 564 NSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVE 623

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +  +M A G   +   Y  L+
Sbjct: 624 MACRLFDEMLAEGCSPNIVTYNILL 648



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S     R      +++++     +P    F+SLI    K   + +      +M+
Sbjct: 539 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 598

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI   GK    + A R+F+EM      PN  TY  LL+    +G+  
Sbjct: 599 EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTA 658

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   +   G   D   YA L
Sbjct: 659 EAVDLYAKLKQQGLTPDSITYAVL 682



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M+  G    ++  N LI + G   + +   R F+ +KK++++ N  TY CLL A   +
Sbjct: 182 DDMERCGVRGSISTINILIGIFGGGADVE---RCFDLVKKWDLQMNCYTYKCLLQAHLRS 238

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +  + +  ++   G  LD F Y  L+ A
Sbjct: 239 NNSNKAFEVYVELRRRGYKLDIFAYNMLLDA 269


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   Y  ++      +        +++M+  G +P     H+++ G +K  +  D  
Sbjct: 323 FTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAI 382

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + MKA G  P+V  Y  LI    K     +A+  F+EM     +P+   Y CL+   
Sbjct: 383 KLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGF 442

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
               ++D VYA++++M   G   D   Y  LI   TN+  +  D A +I + + Q+   S
Sbjct: 443 GNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNR--QMPDDAVRIYKKMIQNGIQS 500

Query: 217 SVET 220
           ++ T
Sbjct: 501 TLHT 504



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 52/116 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++  L  Q +     + +D+M+  G QP   ++  LI G     ++   +   
Sbjct: 396 NVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALL 455

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            +MK  G   D   YN LI +    +  D A+RI+++M +  ++    TY  ++ +
Sbjct: 456 KEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKS 511


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN VV  L    +    + + + M+  G  P    F++LI     G+RL++      Q+ 
Sbjct: 232 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 291

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  +N LI+   K  +   A+R+FEEMK     P+  TY  L++   + G+L 
Sbjct: 292 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 351

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
               +++DM + G       Y  +I     K+
Sbjct: 352 KALDLLKDMESTGCPRSTITYNTIIDGLCKKM 383



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + R     +V+D M L G+      F++LI G  K  ++ D F   +QM 
Sbjct: 372 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 431

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + G  P+   YN +++    CK  D  +A  I E M     + +  TY  L+N    AG+
Sbjct: 432 SEGLQPNNITYNSILT--HYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 489

Query: 162 LDPVYAIVRDMTAAG 176
                 ++R M   G
Sbjct: 490 TQVALKVLRGMRIKG 504



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 20/223 (8%)

Query: 1   MRLLQSIYRHHKSVG------------GALGRRFFVTSA--GAEEYARRNYANNASEYNT 46
           M+LL+S+Y    + G             AL R   V +A    EE + R  A + + + T
Sbjct: 70  MKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTT 129

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++     +        V   M+  G   T+   + LI G  K  R++D   +  Q  A+G
Sbjct: 130 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 189

Query: 107 FLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F PD   YN  ++  G C+N     A+++ + M +    P+  TY  ++N     GQL+ 
Sbjct: 190 FEPDQITYNTFVN--GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 247

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKI 205
              I+  M   G   D   +  LI A    N++  A D A ++
Sbjct: 248 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 290



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 66/161 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        +   YNT++ +L S  +     D+  DM   G   +   ++++I G  K 
Sbjct: 323 EEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKK 382

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     DQM   G   +   +N LI    K K  D A  +  +M    ++PN  TY
Sbjct: 383 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITY 442

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +L      G +     I+  MTA G  +D   Y  LI  
Sbjct: 443 NSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 483



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 66/147 (44%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           + NA  +NT++  L   ++     ++ + M+ +G+QP    ++S++    K   ++    
Sbjct: 401 SRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 460

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             + M ANGF  DV  Y  LI+   K   +  A+++   M+   ++P  + Y  +L +  
Sbjct: 461 ILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLF 520

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +    ++ R+M   G   D   Y
Sbjct: 521 RRNNIRDALSLFREMAEVGEPPDALTY 547



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 130/347 (37%), Gaps = 52/347 (14%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           L G+Q    +++ L+   ++GS+++       +M A G  PDV  +N L+    +     
Sbjct: 47  LFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVR 106

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            A+ + EEM    V P+  T+  L+      G ++    +   M   G    K     LI
Sbjct: 107 TAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLI 166

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
             +  K+ R +D    I +  E + G+   + + N                         
Sbjct: 167 NGYC-KLGRVEDALGYIQQ--EIADGFEPDQITYNT------------------------ 199

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
              F++ L    HV  HA   LK       +++++ ++   PDV+     + C   +G +
Sbjct: 200 ---FVNGLCQNDHVG-HA---LK-------VMDVMVQEGHDPDVFTYNIVVNCLCKNGQL 245

Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEGAMFG-YTPKGMQLAQDTLVNMNSRNIFLSPRM 367
           +    +    +     P    + TL+     G    + + LA+   V        +SP +
Sbjct: 246 EEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK------GVSPDV 299

Query: 368 GSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
            +  +L+ A  K G    A  +++ M+    TP     E  YN L D
Sbjct: 300 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPD----EVTYNTLID 342



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 122/311 (39%), Gaps = 11/311 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    +  LL  VY +M   G++P    F++L+    +  +++      ++M 
Sbjct: 57  YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 116

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PD   +  L+    +  + + A+R+   M +        T   L+N     G+++
Sbjct: 117 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 176

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVEQSKGWSSVETS 221
                ++   A G   D+  Y   +    N + + D    A K+++++ Q      V T 
Sbjct: 177 DALGYIQQEIADGFEPDQITYNTFV----NGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 232

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N   N +    + E       + V R  G L  + T   +    C   +  +A++   +
Sbjct: 233 -NIVVNCLCKNGQLEEAKGILNQMVDR--GCLPDITTFNTLIAALCTGNRLEEALDLARQ 289

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFG 340
           +  K   SPDVY     I      GD     ++FE+   S   P    Y TL++     G
Sbjct: 290 VTVKG-VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 348

Query: 341 YTPKGMQLAQD 351
              K + L +D
Sbjct: 349 KLGKALDLLKD 359



 Score = 41.2 bits (95), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 1/138 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++T    Q       D+ + M  +G +     + +LI G  K  R Q      
Sbjct: 438 NNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVL 497

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAA 158
             M+  G  P    YN ++    +  N   A+ +F EM +    P+  TY +     C  
Sbjct: 498 RGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRG 557

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +   +  + +M   G
Sbjct: 558 GGPIKEAFDFMLEMVDKG 575


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +      ++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 196 YSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 255

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 256 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 313

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 314 LDTAFEHRKRMIQENIRLDDVAYTALISG 342



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 112 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 171

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 172 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDGANGLFDEMLVKGLVPNGV 229

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 289

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 290 -----SMKGLKPDKFTYTTLID---GCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYT 337

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       +  +   GD+  G K+ ++   
Sbjct: 338 ALISGLCQEGRSVDAEKMLREMLSVGLK-PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 396

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 397 DGHAPSVVTYNVLMNG 412


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 197 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 256

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 257 SQSLLPDLITYNTLIY--GLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 314

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  +I+ 
Sbjct: 315 LDAAFEHRKRMIQENIRLDDVAYTAIISG 343



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GVQP    +  LI G  K S++ D     D+M   G +P+   +  LI   G CKN
Sbjct: 185 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID--GHCKN 242

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L+  + ++ +M+  G   DKF Y
Sbjct: 243 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTY 302

Query: 185 AGLI 188
             LI
Sbjct: 303 TTLI 306



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 135/327 (41%), Gaps = 26/327 (7%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           R F +     EE     Y  +   +N ++          + + V+D +   G++P+   +
Sbjct: 103 RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 162

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM 137
           ++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM
Sbjct: 163 NTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEM 220

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--I 195
               + PNG T+  L++     G++D    I + M +     D   Y  LI     K  +
Sbjct: 221 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL 280

Query: 196 PRADDTATKI-IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
            +A     ++ ++ ++  K   +    G   E ++             A + HR+   + 
Sbjct: 281 NQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL------------DAAFEHRK-RMIQ 327

Query: 255 RLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
             + +  VA+ A     C E + V A + L EML    K PD       I  +   GD+ 
Sbjct: 328 ENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLK-PDTGTYTMIINEFCKKGDVW 386

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEG 336
            G K+ ++   +   P    Y  L+ G
Sbjct: 387 KGSKLLKEMQRNGHVPSVXTYNVLMNG 413


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 124/307 (40%), Gaps = 8/307 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +RN   +   Y T V  + S        ++  +M   G +P   ++ +LI   ++ S
Sbjct: 410 EIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKS 469

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R  D      +M+  G  PD   YN LI    K K  D+A     EM +   KP+  TY 
Sbjct: 470 RFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYG 529

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             ++    AG+       V++M   G   +K    GLI  +  K  +  +  +    +VE
Sbjct: 530 AFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKK-GKVIEACSAFRSMVE 588

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
           Q      +          M G+ K    N     +   RG  ++  +  Y       ++L
Sbjct: 589 Q-----GILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKL 643

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-AEL 329
            ++Q   ++ + + +   + +V I    +  +  SG+I+   ++  D +  + FPP A  
Sbjct: 644 GNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELL-DEMSGKGFPPNAVT 702

Query: 330 YATLVEG 336
           Y T+++G
Sbjct: 703 YCTIIDG 709



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 122/317 (38%), Gaps = 18/317 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  ++  L    +     +++ +M   G+ P    + +LI G  K   +Q      
Sbjct: 594 DAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIF 653

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G   +V +YN L+   G C++ +  +A  + +EM      PN  TY  +++   
Sbjct: 654 DEMVQAGLTSNVIIYNMLLG--GFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYC 711

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            +G L   + +  +M   G   D F Y  L+        R +D    I       KG +S
Sbjct: 712 KSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCC----RLNDVERAITIFETNEKGCAS 767

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHR-RGGFLSRLL----TVYHVAFHACAELKD 272
                N   N +    K EL    T + ++R   G   +        Y++      +  +
Sbjct: 768 SSAPFNALINWVFKFGKTEL----TTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGN 823

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           ++A + L   ++K    P V      +  Y   G       VF++ I +   P   +Y+ 
Sbjct: 824 LEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSV 883

Query: 333 LVEGAMF-GYTPKGMQL 348
           ++   +  G T K + L
Sbjct: 884 IINAFLKEGMTTKALVL 900



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 113/333 (33%), Gaps = 76/333 (22%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T++ +   + RF     V  +M   G+ P    ++SLI+G  K  ++ +   F 
Sbjct: 454 NVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFL 513

Query: 100 DQMKANGFLPDVAVYNYLIS-------------------VCGK--------------CKN 126
            +M  NGF PD   Y   IS                    CG               CK 
Sbjct: 514 LEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKK 573

Query: 127 SD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +A   F  M +  +  + +TY  L+N     G+++    I  +M   G   D F Y
Sbjct: 574 GKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSY 633

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
             LI   + K+      ++   E+V+                                  
Sbjct: 634 GTLIDGFS-KLGNMQKASSIFDEMVQAG-------------------------------- 660

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                   L+  + +Y++         +++  + LL+ +      P+       I  Y  
Sbjct: 661 --------LTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCK 712

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
           SGD+    ++F++       P + +Y TLV+G 
Sbjct: 713 SGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGC 745



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 5/195 (2%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           GR     +    E     ++ +   Y+  +  ++ +      + ++D M+  GV P    
Sbjct: 328 GRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARA 387

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEE 136
           + SLI G  +   ++  +    ++K    +  ++ Y Y  +V G C + D   A  I +E
Sbjct: 388 YASLIEGFFREKNVRKGYELLVEIKKRNIV--ISPYTYGTAVKGMCSSGDLDGAYNIVKE 445

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           M     +PN   Y  L+       +      ++++M   G   D FCY  LI   + K  
Sbjct: 446 MGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLS-KAK 504

Query: 197 RADDTATKIIELVEQ 211
           + D+  + ++E+VE 
Sbjct: 505 KMDEARSFLLEMVEN 519



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 50/110 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +    +N   YN ++            +++ D+M   G  P    + ++I G  K 
Sbjct: 654 DEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKS 713

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
             L + F   D+MK  G +PD  VY  L+  C +  + ++AI IFE  +K
Sbjct: 714 GDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEK 763



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +  A +   Y T++   +          ++D+M+  G+     +++ L+ G  +  
Sbjct: 620 EMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSG 679

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQT 148
            ++      D+M   GF P+   Y  +I   G CK+ D  +A ++F+EMK   + P+   
Sbjct: 680 EIEKAKELLDEMSGKGFPPNAVTYCTIID--GYCKSGDLAEAFQLFDEMKLKGLVPDSFV 737

Query: 149 YVCLLNACA 157
           Y  L++ C 
Sbjct: 738 YTTLVDGCC 746



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 36/203 (17%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L  Q+R    + +  +M   G+      +  LI G +KG           +M 
Sbjct: 283 YNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMV 342

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL---------- 153
           ++GF  D  +Y+Y I V  K    ++A  +F+ M  + V P  + Y  L+          
Sbjct: 343 SHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVR 402

Query: 154 -------------------------NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                                        ++G LD  Y IV++M A+G   +   Y  LI
Sbjct: 403 KGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLI 462

Query: 189 TAHTNKIPRADDTATKIIELVEQ 211
                K  R  D    + E+ EQ
Sbjct: 463 KTFLQK-SRFGDAVRVLKEMREQ 484



 Score = 41.2 bits (95), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 50/122 (40%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G+ P+R  ++ LI G  K  RL+D      +M + G   D   Y+ LI    K +N
Sbjct: 271 MSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRN 330

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
           +D A  +  EM  +    +   Y   +   +  G ++   A+   M   G       YA 
Sbjct: 331 ADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYAS 390

Query: 187 LI 188
           LI
Sbjct: 391 LI 392


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 69/162 (42%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A R    +   Y++ + +     R+     +   M   GV+P   ++ + I    KG + 
Sbjct: 213 AARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQW 272

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           +       +M A G  PDV  Y+ +I  C K    + A R+  EM    V  N  TY  +
Sbjct: 273 ETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIV 332

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           + ACA  GQ +   A++R+M   G   D   Y+  I+A   K
Sbjct: 333 IGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKK 374



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           ++  Y++ + +  + R++    ++   M   G  P    + S I    K SR ++     
Sbjct: 185 DSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLL 244

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK  G  P+V VY+  IS C K    + A+ + +EM    + P+  TY  +++ACA  
Sbjct: 245 RSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKR 304

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           GQ +P + ++ +M   G   +   Y+ +I A
Sbjct: 305 GQWEPAFRLLMEMPTKGVVANIITYSIVIGA 335



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y  V+++   + R+    D+  +M   GV P    + + I    + SR +   +  
Sbjct: 395 NAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLL 454

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M A G  P+V  YN  I  C K   S  A+ +  EM  + + P+  TY  ++ +CA  
Sbjct: 455 REMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMG 514

Query: 160 GQLDPVYAIVRDMTAAG 176
            Q +    + R+M   G
Sbjct: 515 RQWEEALDLFREMQRQG 531



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 57/133 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DV D M   GV+P    + S I       + +        M A G  PDV  Y+  I+ C
Sbjct: 172 DVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAAC 231

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A+ +   MK   VKPN   Y   ++AC   GQ +    ++++M A G   D 
Sbjct: 232 AKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDV 291

Query: 182 FCYAGLITAHTNK 194
             Y+ +I A   +
Sbjct: 292 ITYSTVIDACAKR 304



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 73/160 (45%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E      A +   Y++ +++   + ++     +  +M ++GV P    +  +I    K  
Sbjct: 351 EMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRG 410

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R ++      +M+A+G  PDV  Y+  I  C +    +QA+ +  EM    + PN  +Y 
Sbjct: 411 RWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             ++ACA  G+      ++R+M A G   D   Y+ +I +
Sbjct: 471 SAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIAS 510



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 70/155 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+  +++     ++    D+  +M   G+ P    + ++I    K  + +  F   
Sbjct: 255 NVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLL 314

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G + ++  Y+ +I  C K    ++A+ +  EM++  V P+  TY   ++ACA  
Sbjct: 315 MEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKK 374

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           GQ +    ++R+M   G   +   Y  +I+A   +
Sbjct: 375 GQWEEAVGLLREMPMEGVTPNAISYGIVISACAKR 409



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+ +   + ++     +  +M   GV      +  +I    K  + ++      +M+
Sbjct: 294 YSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQ 353

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  PDV  Y+  IS C K    ++A+ +  EM    V PN  +Y  +++ACA  G+  
Sbjct: 354 ENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWR 413

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++++M A G   D   Y+  I A
Sbjct: 414 EAIDLLQEMQAHGVPPDVINYSAAIDA 440



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
             LLRD    M+  G+ P    ++S I    KG R ++      QM   G  PDV  +N 
Sbjct: 626 LVLLRD----MLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNA 681

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            I  CG       A+ +  EM+   V PN  TY+  + AC   G+ D
Sbjct: 682 AIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEKD 728



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 60/147 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ V+ S    R++    D++ +M   G+ P     ++ I    +G   ++      +M 
Sbjct: 504 YSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMP 563

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD   Y   I  C K     + I +  EM    + P+  +Y   ++AC+  G   
Sbjct: 564 TMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWK 623

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++RDM A G   D   Y   I A
Sbjct: 624 EALVLLRDMLAVGLSPDVVTYNSAINA 650



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 24/246 (9%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           ++  +LLR+    M   G+ P    ++S I    K  R +       +M A+G  PDV  
Sbjct: 448 EQALWLLRE----MPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVIT 503

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           Y+ +I+ C   +  ++A+ +F EM++  + P+  +    +NACA  G  +    ++ +M 
Sbjct: 504 YSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMP 563

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-------AE 226
             G   D   Y   I A         D   +II+L+ +    S+V  + +        + 
Sbjct: 564 TMGLVPDAISYRTAIDACAK-----GDRWKEIIDLLREM---STVGLTPDAISYRFAMSA 615

Query: 227 NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
             + G+ KE L  L     V      LS  +  Y+ A +ACA+    +    LL  +   
Sbjct: 616 CSVDGLWKEALVLLRDMLAVG-----LSPDVVTYNSAINACAKGGRWKEATVLLRQMPTF 670

Query: 287 RKSPDV 292
             +PDV
Sbjct: 671 GLAPDV 676



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 63/145 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+ + +     R  +  ++  +M   G+ P    + ++I     G + ++     
Sbjct: 465 NVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLF 524

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  PDV   N  I+ C +    ++A+ +  EM    + P+  +Y   ++ACA  
Sbjct: 525 REMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKG 584

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCY 184
            +   +  ++R+M+  G   D   Y
Sbjct: 585 DRWKEIIDLLREMSTVGLTPDAISY 609



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 68/177 (38%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           A+GR++        E  R+    +    NT + +      +    DV  +M   G+ P  
Sbjct: 512 AMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDA 571

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             + + I    KG R ++      +M   G  PD   Y + +S C       +A+ +  +
Sbjct: 572 ISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRD 631

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           M    + P+  TY   +NACA  G+      ++R M   G   D   +   I A  N
Sbjct: 632 MLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGN 688



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 2/146 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH-SLIVGTMKGSRLQDTFFF 98
           +A  Y T + +     R+  + D+  +M   G+ P    +  ++   ++ G   +     
Sbjct: 570 DAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLL 629

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           RD M A G  PDV  YN  I+ C K     +A  +  +M  + + P+  ++   ++AC  
Sbjct: 630 RD-MLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGN 688

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCY 184
             Q      ++ +M A G   ++  Y
Sbjct: 689 GDQWGTAVEVLFEMRALGVSPNEATY 714


>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1020

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +YDD++ DGV+P    F +L+        +   F   D M+ +G  P   VY+ L+ VC 
Sbjct: 505 IYDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCS 564

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                ++ + ++E ++  +++P   TY  L+ A   A Q D   +++ D+  AG   ++ 
Sbjct: 565 NLGEWEKGLEVYEGIRSSKLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGRTPNQV 624

Query: 183 CYAGLITA 190
            Y+ L+ A
Sbjct: 625 SYSILLKA 632



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 8/235 (3%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +++ GF  D   Y  LIS C K    D   +I  EM    V+ N  T+  +++ CA AGQ
Sbjct: 332 VESRGFKADCVFYTTLISACSKAGKVDLLFQILHEMDVAGVEANVHTFGAMIDGCARAGQ 391

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVE 219
           L   +     M +     D+  +  LI A      + RA D       L +     + V+
Sbjct: 392 LPKAFGAYGIMISKDVKPDRVIFNTLINACSRVGAVQRAFDV------LADMKSEATPVK 445

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
                    +   +K          Y   R   +   L  Y  A HAC++  D+     +
Sbjct: 446 PDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAI 505

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
            + L KD   PD       +    HSGD+D    + +    S   P A +Y++L+
Sbjct: 506 YDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLM 560



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 10/194 (5%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  H K + GAL     V S        R +  +   Y T++++ +   +  LL  
Sbjct: 311 MLLSVCCHAKDIDGALRVLALVES--------RGFKADCVFYTTLISACSKAGKVDLLFQ 362

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +  +M + GV+     F ++I G  +  +L   F     M +    PD  ++N LI+ C 
Sbjct: 363 ILHEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTLINACS 422

Query: 123 KCKNSDQAIRIFEEMKK--YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           +     +A  +  +MK     VKP+  TY  L++ACA  G++     + + M        
Sbjct: 423 RVGAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGF 482

Query: 181 KFCYAGLITAHTNK 194
             CY   + A + K
Sbjct: 483 LACYTAAVHACSQK 496



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 22/237 (9%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK--ANGFLPDVAVYNYLISVC 121
           Y  M+   V+P R +F++LI    +   +Q  F     MK  A    PD   Y  LIS C
Sbjct: 399 YGIMISKDVKPDRVIFNTLINACSRVGAVQRAFDVLADMKSEATPVKPDHVTYGALISAC 458

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A+ +++ M++ +VK     Y   ++AC+  G LD   AI  D+   G   D+
Sbjct: 459 AKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDE 518

Query: 182 FCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYN 239
             ++ L+ A  H+  +    D A  I++++ +S         G    + +MGV      N
Sbjct: 519 VFFSALVDAAGHSGDV----DKAFSILDIMRKSG-----MKPGAVVYSSLMGVCS----N 565

Query: 240 LPTAE-----YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD 291
           L   E     Y   R   L   ++ Y+    A  E K      ++L  LK   ++P+
Sbjct: 566 LGEWEKGLEVYEGIRSSKLRPTVSTYNALMTALCEAKQFDRALSVLNDLKDAGRTPN 622


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 126/324 (38%), Gaps = 42/324 (12%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +     N    N VV +L  + +     DV D M+  GV+P    + +L+ G    S
Sbjct: 221 EMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRS 280

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            + +     D M  NG + +V  YN LI+   K +  D+A+ +FEEM + E+ PN  TY 
Sbjct: 281 EMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYS 340

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++     G+L    A+  +M A G   +   Y+ L+           D   K   L E
Sbjct: 341 TLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILL-----------DYLCKNHRLAE 389

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
                 ++E  G+N + +                            + VY++A       
Sbjct: 390 AMALLKAIE--GSNLDPD----------------------------VQVYNIAIDGMCRA 419

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
            D++A   L   L      PDV+     IR     G +D   K+F +   +        Y
Sbjct: 420 GDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTY 479

Query: 331 ATLVEGAM-FGYTPKGMQLAQDTL 353
            T+ +G +    T + +QL ++ L
Sbjct: 480 NTITQGLLQNNKTSRAIQLLEEML 503



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 5/193 (2%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           L R  F  S  A+   +  +  + + + T+V  L    +     DV+D M+ +G QP   
Sbjct: 104 LNRVDFALSVLAK-ILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVV 162

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEE 136
            + +L+ G  K  +L +      +M A G  PD+  YN LI ++C  C+       +  E
Sbjct: 163 TYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCE-WKHVTTLLNE 221

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           M K ++ PN  +   +++A    G++   + +V  M   G   D   YA L+  H   + 
Sbjct: 222 MVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHC--LR 279

Query: 197 RADDTATKIIELV 209
              D A K+ +++
Sbjct: 280 SEMDEAVKVFDMM 292



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 17/195 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    N   Y+T++  L    R      ++++M+  G  P    +  L+    K 
Sbjct: 325 EEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKN 384

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKPNGQ 147
            RL +       ++ +   PDV VYN  I++ G C+  D +A R +F  +    ++P+  
Sbjct: 385 HRLAEAMALLKAIEGSNLDPDVQVYN--IAIDGMCRAGDLEAARDLFSNLAPRGLQPDVW 442

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA---HTNKIPRADDTATK 204
           T+  ++      G LD    + R+M   G  L   C    IT      NK  RA      
Sbjct: 443 THNIMIRGLCKRGLLDEASKLFREMDENGC-LRNGCTYNTITQGLLQNNKTSRA------ 495

Query: 205 IIELVEQ--SKGWSS 217
            I+L+E+  ++G+S+
Sbjct: 496 -IQLLEEMLARGFSA 509



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 122/316 (38%), Gaps = 35/316 (11%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V+ S     R      V   ++  G QP    F +L+ G     ++ +     D+M   G
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 156

Query: 107 FLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F P+V  Y  L++  G CK+    +A+ +F EM    + P+  TY  L++A     +   
Sbjct: 157 FQPNVVTYGTLMN--GLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 165 VYAIVRDMTAA---------GAGLDKFCYAGLITAHTNKIPRADDTATKIIE-LVEQSKG 214
           V  ++ +M  +            +D  C  G       K+  A D    +I+  VE    
Sbjct: 215 VTTLLNEMVKSKIMPNVVSLNIVVDALCKEG-------KVTEAHDVVDMMIQGGVEPDVV 267

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             +    G+   +EM    K  ++++        R G +  +++ Y+   +   +++ + 
Sbjct: 268 TYAALMDGHCLRSEMDEAVK--VFDMMV------RNGCVCNVVS-YNTLINGYCKIQRID 318

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               L E + +    P+       I    H G + +   +F + +   + P    Y+ L+
Sbjct: 319 KAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILL 378

Query: 335 EGAMFGYTPKGMQLAQ 350
           +     Y  K  +LA+
Sbjct: 379 D-----YLCKNHRLAE 389


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 139/348 (39%), Gaps = 31/348 (8%)

Query: 2   RLLQSIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
           R L SI+  +K +   A  ++F +  +  E+  R   ++N   YN ++     + +  L 
Sbjct: 80  RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 139

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
             +   MM  G +P+     SL+ G   G R+ D     DQM   G+ PD   +  LI  
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                 + +A+ + + M +   +PN  TY  ++N     G +D  + ++  M AA    +
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAN 259

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG-------WSSVETSGNNAENEMMGVS 233
              Y+ +I +   K    DD      E+  ++KG       +SS+ +   N E       
Sbjct: 260 VVIYSTVIDSLC-KYRHEDDALNLFTEM--ENKGVRPNVITYSSLISCLCNYER------ 310

Query: 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRK 288
                    ++        + R +    V F+A       E K V+A +   EM+K+   
Sbjct: 311 --------WSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS-I 361

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            PD++     I  +     +D    +FE  I  + FP    Y TL+ G
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 64/154 (41%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   +N ++ +   + +      +YD+M+   + P    + SLI G     RL +
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                + M +    P+V  YN LI+   K K  D+ + +F EM +  +  N  TY  L++
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               A   D    + + M + G   +   Y  L+
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLL 477



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 4/151 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+++++ L +  R+     +  DM+   + P    F++LI   +K  +L +     
Sbjct: 294 NVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLY 353

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M      PD+  Y+ LI+  G C +   D+A  +FE M   +  PN  TY  L+N   
Sbjct: 354 DEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            A ++D    + R+M+  G   +   Y  LI
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++      +R     +++ +M   G+      + +LI G  +     +     
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            QM ++G  P++  YN L+   G CKN   ++A+ +FE +++ +++P   TY  ++    
Sbjct: 459 KQMVSDGVHPNIMTYNTLLD--GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            AG+++  + +   ++  G   D   Y  +I+    K
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 122/334 (36%), Gaps = 15/334 (4%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           L+  ++ H+K+             A  +   +R    N   Y  VV  L  +    L  +
Sbjct: 196 LIHGLFLHNKASEAV---------ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 246

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + + M    ++    ++ ++I    K     D      +M+  G  P+V  Y+ LIS   
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
             +    A R+  +M + ++ PN  T+  L++A    G+L     +  +M       D F
Sbjct: 307 NYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 366

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            Y+ LI      +    D A  + EL+     + +V T              +E   L  
Sbjct: 367 TYSSLINGFC--MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVEL-F 423

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            E   R  G +   +T Y    H   + +D    + + + +  D   P++      +   
Sbjct: 424 REMSQR--GLVGNTVT-YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             +G ++    VFE    S+  P    Y  ++EG
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 514



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 59/146 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E ++R    N   Y T++      R     + V+  M+ DGV P    +++L+ G  K  
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L+      + ++ +   P +  YN +I    K    +    +F  +    VKP+   Y 
Sbjct: 485 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYN 544

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            +++     G  +   A+ R M   G
Sbjct: 545 TMISGFCRKGLKEEADALFRKMREDG 570



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++  L    +      V++ +    ++PT   ++ +I G  K  +++D +   
Sbjct: 469 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 528

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQT 148
             +   G  PDV +YN +IS  G C+    ++A  +F +M++    P+  T
Sbjct: 529 CSLSLKGVKPDVIIYNTMIS--GFCRKGLKEEADALFRKMREDGPLPDSGT 577


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P R  +++LI    + +  ++     D+MKA+GF PD   +N L+ V GK +  D+A
Sbjct: 238 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 297

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           I + +EM++    P+  TY  L+++    G L+   A+ ++M   G   D   Y  LI+ 
Sbjct: 298 IEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISG 357

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGV 232
               + RA      I+E  E  +          NA  +M GV
Sbjct: 358 ----LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV 395



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 26/283 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD + SLI    +            +M   G  PDV+ YN ++S   
Sbjct: 440 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 499

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +QA ++F EM++ + KP+  +Y  LL+A A A +LD + A+  D+ +       +
Sbjct: 500 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNW 559

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGW------SSVETSGNN----AENEMMGV 232
               L+  ++ K+    +     +EL ++          + V   G N       +++ +
Sbjct: 560 LVKTLVLVNS-KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSL 618

Query: 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292
            KE   NL  A                Y+   H  + L D +  E +L  +K     PD 
Sbjct: 619 MKESAINLSAA---------------TYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 663

Query: 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           Y     I  Y   G +    ++F +  CS   P    Y   V+
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVK 706



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 130/326 (39%), Gaps = 41/326 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++    +  +     V+D+M   G +P +  F+SL+    K  R  +      +M+
Sbjct: 246 YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 305

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  YN LIS   K    +QA+ + +EM+   +KP+  TY  L++    AG++D
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 365

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPR--ADDTATKIIELVEQSKGWSSVE 219
                  +M   G   +   Y  LI  H    K P   A     +    V     W+++ 
Sbjct: 366 AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLL 425

Query: 220 T--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--------------------- 256
                N  ++E+ GV KE    +  A Y+  R  ++S +                     
Sbjct: 426 AVFGQNGLDSEVSGVFKE----MKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME 481

Query: 257 ------LTVYHVAFHACAELKDVQAMETLL-EMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
                 ++ Y+    A A     +  E L  EM ++D K PD Y     +  Y ++  +D
Sbjct: 482 AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK-PDEYSYSSLLHAYANAKRLD 540

Query: 310 NGHKVFEDYICSEKFPPAE-LYATLV 334
              K   D I SE+  P   L  TLV
Sbjct: 541 K-MKALSDDIYSERIEPHNWLVKTLV 565



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 1/155 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           +A  Y  +V++ +   RF     V+  M+  GVQP    ++ ++ V +      ++    
Sbjct: 171 DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVEL 230

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
              MK +G  PD   YN LIS C +     +A ++F+EMK    +P+  T+  LL+    
Sbjct: 231 VASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGK 290

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           A + D    ++++M   G       Y  LI+++  
Sbjct: 291 ARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVK 325



 Score = 45.1 bits (105), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 78/164 (47%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R+   +   Y++++ +  + +R   ++ + DD+  + ++P   L  +L++   K +
Sbjct: 513 EMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVN 572

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L +      +++      D+ V N ++S+ GK +   +  +I   MK+  +  +  TY 
Sbjct: 573 NLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYN 632

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            L++  +  G  +    I+ ++ ++G   D++ Y  +I A+  K
Sbjct: 633 SLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRK 676



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 52/120 (43%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  ++   GV+P R  ++++I    +  ++++      +MK +G  PDV  YN  +   
Sbjct: 649 NILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSY 708

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 ++AI +   M     KPN +TY  ++      G+L      V ++     G  K
Sbjct: 709 VSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQLHPGYSK 768



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           ++K++G  PD   YN +I   G+     +A R+F EMK   +KP+  TY   + +  +  
Sbjct: 653 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 712

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +    +VR M   G   ++  Y  ++  +
Sbjct: 713 MFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 19/291 (6%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N VV  L   R +     V+       V+P   +  +LI     G RL +       M+ 
Sbjct: 177 NVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEK 236

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G    +  +N L+  CG+C   D A+ +FEEMK+  + P+  T+  L++A  AAG+   
Sbjct: 237 QGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAGKWKA 296

Query: 165 VYAIVRDMTAAGAGLDKFCYA-GLITAHTNKIPRADDTATK---IIELVEQSKGWSSVET 220
             + +  M A G     F +A G  T       RA ++      +  ++EQ       E 
Sbjct: 297 AQSFINLMQAGG-----FSFAIGEFTEMQWACARARNSRESLGLLQAMIEQ-----GCEP 346

Query: 221 SGNNAENEMMGVSKEELYN--LPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
              N    +    K   +   + T  ++  + GF    +T +     ACA     +    
Sbjct: 347 RLENYNALLCAYEKTANWEEAVRTVVWIQEK-GFTPDFIT-WSSLLGACANAGQAEKAVA 404

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
           ++E +K++  +P+V      ++ Y  +G+ +   ++F   + S   PP E+
Sbjct: 405 VMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNS-GCPPNEV 454



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT-FFFRDQMKANGFLPDVAVYNYLISV 120
            V+  M+L+G++P      +L+    KG +L    FFF   M   G  PD   Y  +   
Sbjct: 544 SVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWA 603

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           C  C    +A    E M+     P+   Y  L+    A GQ+D    I++ M
Sbjct: 604 CWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMYEAHGQVDKAMEILKKM 655



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 58/125 (46%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  G +P  + +++L+    K +  ++       ++  GF PD   ++ L+  C     
Sbjct: 339 MIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQ 398

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
           +++A+ + E+MK+    PN  ++  LL A    G  +    I   M  +G   ++  +  
Sbjct: 399 AEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNS 458

Query: 187 LITAH 191
           L++A+
Sbjct: 459 LLSAY 463



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-----VGTMKGSRLQDTFFF 98
           ++T +++L    ++ L       M   G QP    + SLI     VG    ++ +  F  
Sbjct: 491 WSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLW--NKAESVF-- 546

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACA 157
              M   G  PD      L+    K +  D+ +  F+ M  +Y +KP+   Y  +  AC 
Sbjct: 547 -KSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWACW 605

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             G+       + +M AAG   D   Y  LIT +
Sbjct: 606 TCGEWQRAADYMENMEAAGCTPDTMIYTTLITMY 639



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 64/162 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+    N+  N   +  ++ +      +    +++  M+  G  P    ++SL+    KG
Sbjct: 407 EKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKG 466

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +   +  ++ +  G   DV  ++  IS   K      A +   +MK+   +PN  TY
Sbjct: 467 RQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTY 526

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+ A    G  +   ++ + M   G   D      L+ A+
Sbjct: 527 SSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAY 568



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 46/120 (38%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P    + SL+       + +      ++MK N F P+V  + YL+    K  N ++ 
Sbjct: 378 GFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKT 437

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             IF  M      PN   +  LL+A     Q   V   +      G  LD   ++  I+A
Sbjct: 438 EEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISA 497


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 156/398 (39%), Gaps = 38/398 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++S      +    +V+++M   G  P +  +++L+    K  R ++      +M+
Sbjct: 294 YNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEME 353

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+GF P +  YN LIS   +    D+A+ +  +M K  +KP+  TY  LL+     G+ D
Sbjct: 354 ASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDD 413

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT----KIIELVEQSKGWSSVE 219
               +  +M  AG   +   +  LI  H N+    +        KI E V     W+++ 
Sbjct: 414 YAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLL 473

Query: 220 T--SGNNAENEMMGVSKE--------ELYNLPTAEYVHRRGGFLSRL------------- 256
                N  ++E+ GV KE        E     T    + R GF  +              
Sbjct: 474 AVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVT 533

Query: 257 --LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             L+ Y+    A A     +  E +L  +K  R  P+       +  Y +  +++    +
Sbjct: 534 PDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSAL 593

Query: 315 FEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLV 374
            E+       P A L  TLV      Y+   + L +     +  R    SP + +   +V
Sbjct: 594 AEEIYSGIIEPQAVLLKTLV----LVYSKSDL-LTETERAFLELREQGFSPDITTLNAMV 648

Query: 375 AAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           +   +    +  N I + ++    TPSL      YN L
Sbjct: 649 SIYGRRRMVSKTNEILNFIKDSGFTPSLTT----YNSL 682



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 10/257 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD F++LI    +            +M   G  PD++ YN +++   
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +Q+ ++  EMK    KPN  TY  LL+A A   +++ + A+  ++ +        
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
               L+  ++ K     +T    +EL EQ  G+S   T+     N M+ +         T
Sbjct: 608 LLKTLVLVYS-KSDLLTETERAFLELREQ--GFSPDITT----LNAMVSIYGRRRMVSKT 660

Query: 243 AEYVH--RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
            E ++  +  GF   L T Y+   +  +  +  +  E +L  +      PD+      I 
Sbjct: 661 NEILNFIKDSGFTPSL-TTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIF 719

Query: 301 CYLHSGDIDNGHKVFED 317
            Y  +G +    ++F +
Sbjct: 720 AYCRNGRMKEASRIFAE 736



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 44/273 (16%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           +++ L  + R      +  D+  DGV      + SLI       R ++      +++  G
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIR-IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
             P +  YN +++V GK       I  + + MK   V P+  TY  L+++C      +  
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAH-TNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
             +  +M AAG   DK  Y  L+  +  ++ PR    A ++++ +E S    S+ T    
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE---AMEVLKEMEASGFAPSIVT---- 363

Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
                        YN   + Y   R G L                    +AME   +M+K
Sbjct: 364 -------------YNSLISAYA--RDGLLD-------------------EAMELKSQMVK 389

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           K  K PDV+     +  +  +G  D   KVFE+
Sbjct: 390 KGIK-PDVFTYTTLLSGFEKTGKDDYAMKVFEE 421



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 61/136 (44%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  + + YN+++   +    F    D+  +++  G++P    F+++I    +  R+++  
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +MK  G  PDV  YN  I+         +AI + + M K   KPN  TY  L++  
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWF 791

Query: 157 AAAGQLDPVYAIVRDM 172
               + D   + + ++
Sbjct: 792 CKLNRRDEASSFISNL 807



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 76/178 (42%), Gaps = 1/178 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   + ++ + +  N +V+    +R      ++ + +   G  P+   ++SL+    +  
Sbjct: 631 ELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTE 690

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             + +     ++ A G  PD+  +N +I    +     +A RIF EMK + + P+  TY 
Sbjct: 691 HFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYN 750

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
             + + A+         +V+ M   G   ++  Y  LI     K+ R D+ ++ I  L
Sbjct: 751 TFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFC-KLNRRDEASSFISNL 807


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P R  +++LI    + +  ++     D+MKA+GF PD   +N L+ V GK +  D+A
Sbjct: 238 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 297

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           I + +EM++    P+  TY  L+++    G L+   A+ ++M   G   D   Y  LI+ 
Sbjct: 298 IEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISG 357

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGV 232
               + RA      I+E  E  +          NA  +M GV
Sbjct: 358 ----LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV 395



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 26/283 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD + SLI    +            +M   G  PDV+ YN ++S   
Sbjct: 440 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 499

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +QA ++F EM++ + KP+  +Y  LL+A A A +LD + A+  D+ +       +
Sbjct: 500 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNW 559

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGW------SSVETSGNN----AENEMMGV 232
               L+  ++ K+    +     +EL ++          + V   G N       +++ +
Sbjct: 560 LVKTLVLVNS-KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSL 618

Query: 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292
            KE   NL  A                Y+   H  + L D +  E +L  +K     PD 
Sbjct: 619 MKESAINLSAA---------------TYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 663

Query: 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           Y     I  Y   G +    ++F +  CS   P    Y   V+
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVK 706



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 130/326 (39%), Gaps = 41/326 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++    +  +     V+D+M   G +P +  F+SL+    K  R  +      +M+
Sbjct: 246 YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 305

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  YN LIS   K    +QA+ + +EM+   +KP+  TY  L++    AG++D
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKID 365

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPR--ADDTATKIIELVEQSKGWSSVE 219
                  +M   G   +   Y  LI  H    K P   A     +    V     W+++ 
Sbjct: 366 AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLL 425

Query: 220 T--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--------------------- 256
                N  ++E+ GV KE    +  A Y+  R  ++S +                     
Sbjct: 426 AVFGQNGLDSEVSGVFKE----MKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME 481

Query: 257 ------LTVYHVAFHACAELKDVQAMETLL-EMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
                 ++ Y+    A A     +  E L  EM ++D K PD Y     +  Y ++  +D
Sbjct: 482 AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK-PDEYSYSSLLHAYANAKRLD 540

Query: 310 NGHKVFEDYICSEKFPPAE-LYATLV 334
              K   D I SE+  P   L  TLV
Sbjct: 541 K-MKALSDDIYSERIEPHNWLVKTLV 565



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 1/155 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           +A  Y  +V++ +   RF     V+  M+  GVQP    ++ ++ V +      ++    
Sbjct: 171 DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVEL 230

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
              MK +G  PD   YN LIS C +     +A ++F+EMK    +P+  T+  LL+    
Sbjct: 231 VASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGK 290

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           A + D    ++++M   G       Y  LI+++  
Sbjct: 291 ARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVK 325



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 78/164 (47%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R+   +   Y++++ +  + +R   ++ + DD+  + ++P   L  +L++   K +
Sbjct: 513 EMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVN 572

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L +      +++      D+ V N ++S+ GK +   +  +I   MK+  +  +  TY 
Sbjct: 573 NLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYN 632

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            L++  +  G  +    I+ ++ ++G   D++ Y  +I A+  K
Sbjct: 633 SLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRK 676



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 52/120 (43%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  ++   GV+P R  ++++I    +  ++++      +MK +G  PDV  YN  +   
Sbjct: 649 NILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSY 708

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 ++AI +   M     KPN +TY  ++      G+L      V ++     G  K
Sbjct: 709 VSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQLHPGYSK 768



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           ++K++G  PD   YN +I   G+     +A R+F EMK   +KP+  TY   + +  +  
Sbjct: 653 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 712

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +    +VR M   G   ++  Y  ++  +
Sbjct: 713 MFEEAIELVRYMVTQGCKPNERTYNSIVEGY 743


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P R  +++LI    + +  ++     D+MKA+GF PD   +N L+ V GK +  D+A
Sbjct: 220 GVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEA 279

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           I + +EM++    P+  TY  L+++    G L+   A+ ++M   G   D   Y  LI+ 
Sbjct: 280 IEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISG 339

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGV 232
               + RA      I+E  E  +          NA  +M GV
Sbjct: 340 ----LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV 377



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 26/284 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD + SLI    +            +M   G  PDV+ YN ++S   
Sbjct: 422 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 481

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +QA ++F EM++ + KP+  +Y  LL+A A A +LD + A+  D+ +       +
Sbjct: 482 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNW 541

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGW------SSVETSGNN----AENEMMGV 232
               L+  ++ K+    +     +EL ++          + V   G N       +++ +
Sbjct: 542 LVKTLVLVNS-KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSL 600

Query: 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292
            KE   NL  A                Y+   H  + L D +  E +L  +K     PD 
Sbjct: 601 MKESAINLSAA---------------TYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 645

Query: 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           Y     I  Y   G +    ++F +  CS   P    Y   V+ 
Sbjct: 646 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 689



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 130/326 (39%), Gaps = 41/326 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++    +  +     V+D+M   G +P +  F+SL+    K  R  +      +M+
Sbjct: 228 YNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEME 287

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  YN LIS   K    +QA+ + +EM+   +KP+  TY  L++    AG++D
Sbjct: 288 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 347

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPR--ADDTATKIIELVEQSKGWSSVE 219
                  +M   G   +   Y  LI  H    K P   A     +    V     W+++ 
Sbjct: 348 AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLL 407

Query: 220 T--SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--------------------- 256
                N  ++E+ GV KE    +  A Y+  R  ++S +                     
Sbjct: 408 AVFGQNGLDSEVSGVFKE----MKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME 463

Query: 257 ------LTVYHVAFHACAELKDVQAMETLL-EMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
                 ++ Y+    A A     +  E L  EM ++D K PD Y     +  Y ++  +D
Sbjct: 464 AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCK-PDEYSYSSLLHAYANAKRLD 522

Query: 310 NGHKVFEDYICSEKFPPAE-LYATLV 334
              K   D I SE+  P   L  TLV
Sbjct: 523 K-MKALSDDIYSERIEPHNWLVKTLV 547



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 1/154 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           +A  Y  +V++ +   RF     V+  M+  GVQP    ++ ++ V +      ++    
Sbjct: 153 DAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVEL 212

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
              MK +G  PD   YN LIS C +     +A ++F+EMK    +P+  T+  LL+    
Sbjct: 213 VASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGK 272

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           A + D    ++++M   G       Y  LI+++ 
Sbjct: 273 ARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYV 306



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 78/164 (47%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R+   +   Y++++ +  + +R   ++ + DD+  + ++P   L  +L++   K +
Sbjct: 495 EMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVN 554

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L +      +++      D+ V N ++S+ GK +   +  +I   MK+  +  +  TY 
Sbjct: 555 NLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYN 614

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            L++  +  G  +    I+ ++ ++G   D++ Y  +I A+  K
Sbjct: 615 SLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRK 658



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 52/120 (43%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  ++   GV+P R  ++++I    +  ++++      +MK +G  PDV  YN  +   
Sbjct: 631 NILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSY 690

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 ++AI +   M     KPN +TY  ++      G+L      V ++     G  K
Sbjct: 691 VSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQLHPGYSK 750



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 43/91 (47%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           ++K++G  PD   YN +I   G+     +A R+F EMK   +KP+  TY   + +  +  
Sbjct: 635 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 694

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +    +VR M   G   ++  Y  ++  +
Sbjct: 695 MFEEAIELVRYMVTQGCKPNERTYNSIVEGY 725


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+ +G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLIN--GLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATK- 204
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   + 
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
           I++ +   K   +    GN  E            +L TA EY  R      RL  V + A
Sbjct: 303 IMKGLXPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLNVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M++ G+ P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLNVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   YNT+++    +++        D+M+  G++P    +  LI G    
Sbjct: 542 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 601

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++++   F D  K NG LPDV  Y+ +I  C K + +++    F+EM    V+PN   Y
Sbjct: 602 NKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVY 661

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+ A   +G+L     +  DM   G   +   Y  LI
Sbjct: 662 NHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++ +D+MM   VQP   +++ LI    +  RL      R+ MK  G  P+ A Y  LI  
Sbjct: 643 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 702

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  ++A  +FEEM+   ++PN   Y  L++     GQ+  V  ++R+M +     +
Sbjct: 703 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 762

Query: 181 KFCYAGLITAH 191
           K  Y  +I  +
Sbjct: 763 KITYTVMIGGY 773



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 38  ANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           A N   +NTV+  L    R+   F+ ++    M+  G++PT   +  L+ G  +  R+ D
Sbjct: 305 APNVVTFNTVIDGLGMCGRYDEAFMFKE---KMVERGMEPTLITYSILVKGLTRAKRIGD 361

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +F   +M   GF P+V VYN LI    +  + ++AI I + M    +     TY  L+ 
Sbjct: 362 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 421

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                GQ D    ++++M + G  +++  +  +I
Sbjct: 422 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 455



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 4/179 (2%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++TSL     F    + +D ++  GV P   LF + I    KG ++++      +M+ 
Sbjct: 243 NILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 301

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P+V  +N +I   G C   D+A    E+M +  ++P   TY  L+     A ++  
Sbjct: 302 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGD 361

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            Y ++++MT  G   +   Y  LI +       + + A +I +L+  SKG S   ++ N
Sbjct: 362 AYFVLKEMTKKGFPPNVIVYNNLIDSFIE--AGSLNKAIEIKDLM-VSKGLSLTSSTYN 417



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 6/170 (3%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           G+ FF      +E   +N   N   YN ++ +     R  +  ++ +DM   G+ P    
Sbjct: 642 GQEFF------DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 695

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI G    SR+++     ++M+  G  P+V  Y  LI   GK     +   +  EM 
Sbjct: 696 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 755

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              V PN  TY  ++   A  G +     ++ +M   G   D   Y   I
Sbjct: 756 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 805



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y+ ++  L +  +       +DD   +G+ P    +  +I G  K 
Sbjct: 577 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKA 636

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++   F D+M +    P+  VYN+LI    +      A+ + E+MK   + PN  TY
Sbjct: 637 ERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 696

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+   +   +++    +  +M   G   + F Y  LI  +
Sbjct: 697 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 738



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++  M   GV P    F+++I G     R  + F F+++M   G  P +  Y+ L+    
Sbjct: 295 LFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 354

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           + K    A  + +EM K    PN   Y  L+++   AG L+    I   M + G  L   
Sbjct: 355 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 414

Query: 183 CYAGLITAHTNKIPRADDTATKIIELV 209
            Y  LI  +  K  +AD+    + E++
Sbjct: 415 TYNTLIKGYC-KNGQADNAERLLKEML 440



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 64/158 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   RN +       T+++ L    +     +++   +  G        ++L+ G  +  
Sbjct: 473 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAG 532

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L + F  + ++   G + D   YN LIS C   K  D+A    +EM K  +KP+  TY 
Sbjct: 533 KLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS 592

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+       +++       D    G   D + Y+ +I
Sbjct: 593 ILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMI 630



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           +L  DV+  +   G+ P++   + L+   ++ +  Q      D +   G  PDV ++   
Sbjct: 221 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV-CKGVSPDVYLFTTA 279

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           I+   K    ++A+++F +M++  V PN  T+  +++     G+ D  +     M   G 
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339

Query: 178 GLDKFCYAGLITAHT 192
                 Y+ L+   T
Sbjct: 340 EPTLITYSILVKGLT 354


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +      ++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFEHRKRMIQENIRLDDVAYTALISG 361



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDGANGLFDEMLVKGLVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG   ++         + G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 309 -----SMKG---LKPDKFTYTTLIDGCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYT 356

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       +  +   GD+  G K+ ++   
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLK-PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 415

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 416 DGHAPSVVTYNVLMNG 431


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 154/387 (39%), Gaps = 39/387 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L    +      V+ DM L    P    +  +I  T K  R +++    ++M 
Sbjct: 272 YNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEESLALFEEML 331

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P++  YN +I    K    D+AI +F  M K   +PN  TY  +LN   A GQL 
Sbjct: 332 TKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLG 391

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI-----TAHTNKIPRA------------DDTATKII 206
            +  +   +  +   ++K  YA L+       H+++  R              D    ++
Sbjct: 392 RLDEV---LEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRDAYISML 448

Query: 207 E-------LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH------RRGGFL 253
           E        VE  +  S V   G + +  M       L  L    ++H      ++ G  
Sbjct: 449 ESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPF 508

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
             + T Y++   +   +  V+    + E L+     PD+      I C   +GD+D  H 
Sbjct: 509 PDIFT-YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHM 567

Query: 314 VFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLL 373
            F +       P    Y+TL+E   FG T K +++A+     M ++     P + +  +L
Sbjct: 568 RFLEMQDKGLNPDVVTYSTLIE--CFGKTDK-VEMARSLFDRMITQGC--CPNIVTYNIL 622

Query: 374 VAAGEKSGGYTTANYIWDLMQARKITP 400
           +   E++G       ++  ++ + +TP
Sbjct: 623 LDCLERAGRTAETVDLYAKLREQGLTP 649



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 123/318 (38%), Gaps = 40/318 (12%)

Query: 48  VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107
           + S  S R F    +VY +M  +G Q     ++ L+    K  +L  ++     MK    
Sbjct: 245 IRSRDSDRAF----NVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHC 300

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
            PD   Y  +I + GK   +++++ +FEEM      PN   Y  ++ A + +G +D    
Sbjct: 301 NPDEYTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAIL 360

Query: 168 IVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIELVEQS------------- 212
           +  +M       ++F Y+ ++       ++ R D+      + + +S             
Sbjct: 361 LFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLG 420

Query: 213 ----------KGWSSVETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGFLSRL 256
                       WS  +    +A   M+      G + E +  L     VH +G  +S  
Sbjct: 421 HSSEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSK---VHEKG--ISTD 475

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
             +Y+       +LK V  +  L E +K+D   PD++     I      G +    +VFE
Sbjct: 476 TMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFE 535

Query: 317 DYICSEKFPPAELYATLV 334
           +   S+  P    Y +L+
Sbjct: 536 ELESSDCKPDIISYNSLI 553



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++SL    +     +V++++     +P    ++SLI    K   + +      +M+
Sbjct: 514 YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQ 573

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI   GK    + A  +F+ M      PN  TY  LL+    AG+  
Sbjct: 574 DKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTA 633

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   +   G   D   YA L
Sbjct: 634 ETVDLYAKLREQGLTPDSITYAIL 657


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+         M 
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFKHRKRMIQGNIRLDDVAYTALISG 361



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 133/323 (41%), Gaps = 18/323 (5%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           R F +     EE     Y  +   +N ++          + + V+D +   G++P+   +
Sbjct: 121 RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSY 180

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM 137
           ++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM
Sbjct: 181 NTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEM 238

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
               + PNG T+  L+      G++D    I + M +     D   Y  LI      + +
Sbjct: 239 LVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYG----LCK 294

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--R 255
             D       + E S     ++         + G  KE   +L TA + HR+       R
Sbjct: 295 KGDLKQAHXLIDEMSM--KGLKPDKFTYTTLIDGCCKEG--DLDTA-FKHRKRMIQGNIR 349

Query: 256 LLTVYHVAFHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
           L  V + A  +  C E + V A + L EML    K PD+      I  +   GD+  G K
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK-PDIGTYTMIINEFCKKGDVWKGSK 408

Query: 314 VFEDYICSEKFPPAELYATLVEG 336
           + ++   +   P    Y  L+ G
Sbjct: 409 LLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 64/328 (19%), Positives = 123/328 (37%), Gaps = 17/328 (5%)

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKP 144
           MK    +  + F +++   G+   +  +N L+     CK+ D   A  +F+ + K+ ++P
Sbjct: 118 MKLRYFKLVWGFYEEILECGYPASLYFFNILMH--RFCKDGDIRVAQSVFDAITKWGLRP 175

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           +  +Y  L+N     G LD  + +   M A+G   D + Y+ LI     K  + DD    
Sbjct: 176 SVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLING-LCKESKMDDANEL 234

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
             E++ +      +  +G      + G  K    +L    Y       L   L  Y+   
Sbjct: 235 FDEMLVKG-----LIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLI 289

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
           +   +  D++    L++ +      PD +     I      GD+D   K  +  I     
Sbjct: 290 YGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIR 349

Query: 325 PPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGY 383
                Y  L+ G    G +    ++ ++ L      ++ L P +G+  +++    K G  
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREML------SVGLKPDIGTYTMIINEFCKKGDV 403

Query: 384 TTANYIWDLMQARKITPSLPAVEAYYNG 411
              + +   MQ     PS+       NG
Sbjct: 404 WKGSKLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   YNT+++    +++        D+M+  G++P    +  LI G    
Sbjct: 518 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 577

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++++   F D  K NG LPDV  Y+ +I  C K + +++    F+EM    V+PN   Y
Sbjct: 578 NKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVY 637

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+ A   +G+L     +  DM   G   +   Y  LI   +            II  V
Sbjct: 638 NHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS------------IISRV 685

Query: 210 EQSK 213
           E++K
Sbjct: 686 EEAK 689



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++ +D+MM   VQP   +++ LI    +  RL      R+ MK  G  P+ A Y  LI  
Sbjct: 619 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 678

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  ++A  +FEEM+   ++PN   Y  L++     GQ+  V  ++R+M +     +
Sbjct: 679 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 738

Query: 181 KFCYAGLITAH 191
           K  Y  +I  +
Sbjct: 739 KITYTVMIGGY 749



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 38  ANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           A N   +NTV+  L    R+   F+ ++    M+  G++PT   +  L+ G  +  R+ D
Sbjct: 281 APNVVTFNTVIDGLGMCGRYDEAFMFKE---KMVERGMEPTLITYSILVKGLTRAKRIGD 337

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +F   +M   GF P+V VYN LI    +  + ++AI I + M    +     TY  L+ 
Sbjct: 338 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 397

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                GQ D    ++++M + G  +++  +  +I
Sbjct: 398 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 431



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 4/179 (2%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++TSL     F    + +D ++  GV P   LF + I    KG ++++      +M+ 
Sbjct: 219 NILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 277

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P+V  +N +I   G C   D+A    E+M +  ++P   TY  L+     A ++  
Sbjct: 278 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGD 337

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            Y ++++MT  G   +   Y  LI +       + + A +I +L+  SKG S   ++ N
Sbjct: 338 AYFVLKEMTKKGFPPNVIVYNNLIDSFIE--AGSLNKAIEIKDLM-VSKGLSLTSSTYN 393



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           G+ FF      +E   +N   N   YN ++ +     R  +  ++ +DM   G+ P    
Sbjct: 618 GQEFF------DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 671

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI G    SR+++     ++M+  G  P+V  Y  LI   GK     +   +  EM 
Sbjct: 672 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 731

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              V PN  TY  ++   A  G +     ++ +M   G   D   Y   I  +
Sbjct: 732 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 784



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y+ ++  L +  +       +DD   +G+ P    +  +I G  K 
Sbjct: 553 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKA 612

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++   F D+M +    P+  VYN+LI    +      A+ + E+MK   + PN  TY
Sbjct: 613 ERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 672

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+   +   +++    +  +M   G   + F Y  LI  +
Sbjct: 673 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 714



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++  M   GV P    F+++I G     R  + F F+++M   G  P +  Y+ L+    
Sbjct: 271 LFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 330

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           + K    A  + +EM K    PN   Y  L+++   AG L+    I   M + G  L   
Sbjct: 331 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 390

Query: 183 CYAGLITAHTNKIPRADDTATKIIELV 209
            Y  LI  +  K  +AD+    + E++
Sbjct: 391 TYNTLIKGYC-KNGQADNAERLLKEML 416



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 64/158 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   RN +       T+++ L    +     +++   +  G        ++L+ G  +  
Sbjct: 449 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAG 508

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L + F  + ++   G + D   YN LIS C   K  D+A    +EM K  +KP+  TY 
Sbjct: 509 KLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS 568

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+       +++       D    G   D + Y+ +I
Sbjct: 569 ILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMI 606



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           +L  DV+  +   G+ P++   + L+   ++ +  Q      D +   G  PDV ++   
Sbjct: 197 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV-CKGVSPDVYLFTTA 255

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           I+   K    ++A+++F +M++  V PN  T+  +++     G+ D  +     M   G 
Sbjct: 256 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 315

Query: 178 GLDKFCYAGLITAHT 192
                 Y+ L+   T
Sbjct: 316 EPTLITYSILVKGLT 330


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 66/131 (50%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ +    +++     +Y DM+   V P+  ++ + I G   GSR+ + F F ++ K
Sbjct: 263 YGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSK 322

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+GF P+   YN ++S        D A RI  EMK+  + PN +TY  +L      G+  
Sbjct: 323 ASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTK 382

Query: 164 PVYAIVRDMTA 174
             Y++ + M++
Sbjct: 383 EAYSVFQRMSS 393



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 42  SEYNTVVTSLTSQRRFFL--LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           S++N ++  L  + +F +   ++++D M    ++P    +  LI G  +   L       
Sbjct: 190 SDFNKLIDVLC-KSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVC 248

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK +GF PDV  Y  +I+   K K  D+AI I+ +M    V P+   Y   +      
Sbjct: 249 REMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNG 308

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            ++D  +       A+G   +   Y  +++A+   + R DD    + E+ E   G
Sbjct: 309 SRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSM-RIDDAYRIVGEMKELGIG 362



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 1/185 (0%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   Y  ++   + Q+    + +V  +M  DG QP    +  +I    K  +  + 
Sbjct: 220 NLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEA 279

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                 M +    P   +Y   I+  G     D+A   FE+ K     P   TY  +++A
Sbjct: 280 IGIYHDMLSKNVNPSPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSA 339

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
              + ++D  Y IV +M   G G +   Y  +I  H  K  R  +  +    +  ++   
Sbjct: 340 YCWSMRIDDAYRIVGEMKELGIGPNARTY-DIILVHLIKGGRTKEAYSVFQRMSSETGCE 398

Query: 216 SSVET 220
            SV T
Sbjct: 399 PSVST 403



 Score = 38.1 bits (87), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           NA  Y+ ++  L    R      V+  M  + G +P+   +  ++      ++L      
Sbjct: 364 NARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVV 423

Query: 99  RDQMKANGFLPDVAVYNYL-ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            ++MK  G LP + +++ L IS+C + K  D A R F++M    ++P    +     A  
Sbjct: 424 WNEMKDKGILPGIHMFSTLIISLCHENK-LDDACRYFQQMLDVGIRPTANMFSAFKRALM 482

Query: 158 AAGQLDPV 165
           AAG  + V
Sbjct: 483 AAGMENTV 490


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   YNT+++    +++        D+M+  G++P    +  LI G    
Sbjct: 529 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 588

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++++   F D  K NG LPDV  Y+ +I  C K + +++    F+EM    V+PN   Y
Sbjct: 589 NKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVY 648

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+ A   +G+L     +  DM   G   +   Y  LI
Sbjct: 649 NHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 687



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++ +D+MM   VQP   +++ LI    +  RL      R+ MK  G  P+ A Y  LI  
Sbjct: 630 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 689

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  ++A  +FEEM+   ++PN   Y  L++     GQ+  V  ++R+M +     +
Sbjct: 690 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 749

Query: 181 KFCYAGLITAH 191
           K  Y  +I  +
Sbjct: 750 KITYTVMIGGY 760



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 38  ANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           A N   +NTV+  L    R+   F+ ++    M+  G++PT   +  L+ G  +  R+ D
Sbjct: 292 APNVVTFNTVIDGLGMCGRYDEAFMFKE---KMVERGMEPTLITYSILVKGLTRAKRIGD 348

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +F   +M   GF P+V VYN LI    +  + ++AI I + M    +     TY  L+ 
Sbjct: 349 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 408

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                GQ D    ++++M + G  +++  +  +I
Sbjct: 409 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 442



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 4/179 (2%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++TSL     F    + +D ++  GV P   LF + I    KG ++++      +M+ 
Sbjct: 230 NILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 288

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P+V  +N +I   G C   D+A    E+M +  ++P   TY  L+     A ++  
Sbjct: 289 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGD 348

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            Y ++++MT  G   +   Y  LI +       + + A +I +L+  SKG S   ++ N
Sbjct: 349 AYFVLKEMTKKGFPPNVIVYNNLIDSFIE--AGSLNKAIEIKDLM-VSKGLSLTSSTYN 404



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 6/170 (3%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           G+ FF      +E   +N   N   YN ++ +     R  +  ++ +DM   G+ P    
Sbjct: 629 GQEFF------DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 682

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI G    SR+++     ++M+  G  P+V  Y  LI   GK     +   +  EM 
Sbjct: 683 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 742

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              V PN  TY  ++   A  G +     ++ +M   G   D   Y   I
Sbjct: 743 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 792



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y+ ++  L +  +       +DD   +G+ P    +  +I G  K 
Sbjct: 564 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKA 623

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++   F D+M +    P+  VYN+LI    +      A+ + E+MK   + PN  TY
Sbjct: 624 ERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 683

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+   +   +++    +  +M   G   + F Y  LI  +
Sbjct: 684 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 725



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 1/147 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++  M   GV P    F+++I G     R  + F F+++M   G  P +  Y+ L+    
Sbjct: 282 LFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 341

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           + K    A  + +EM K    PN   Y  L+++   AG L+    I   M + G  L   
Sbjct: 342 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 401

Query: 183 CYAGLITAHTNKIPRADDTATKIIELV 209
            Y  LI  +  K  +AD+    + E++
Sbjct: 402 TYNTLIKGYC-KNGQADNAERLLKEML 427



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 64/158 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   RN +       T+++ L    +     +++   +  G        ++L+ G  +  
Sbjct: 460 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAG 519

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L + F  + ++   G + D   YN LIS C   K  D+A    +EM K  +KP+  TY 
Sbjct: 520 KLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS 579

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+       +++       D    G   D + Y+ +I
Sbjct: 580 ILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMI 617



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           +L  DV+  +   G+ P++   + L+   ++ +  Q      D +   G  PDV ++   
Sbjct: 208 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV-CKGVSPDVYLFTTA 266

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           I+   K    ++A+++F +M++  V PN  T+  +++     G+ D  +     M   G 
Sbjct: 267 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 326

Query: 178 GLDKFCYAGLITAHT 192
                 Y+ L+   T
Sbjct: 327 EPTLITYSILVKGLT 341


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 7/251 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   YN +V    ++ +      + + M   GV P    ++ LI G      ++ 
Sbjct: 353 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 412

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            F     M+ +G + D   YN LI+   K   +DQA  +F+ ++   +KPN  T+  L+N
Sbjct: 413 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 472

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               +G+ D  +  +  M +AG   D + Y+  I  H  K+  + +  + I E++++   
Sbjct: 473 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI-EHLCKMKGSQEGLSFIGEMLQK--- 528

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDV 273
              V+ S  N    +  + KE  Y L    +        +  +  Y  +  A C E +  
Sbjct: 529 --DVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLN 586

Query: 274 QAMETLLEMLK 284
           +A   L+EM K
Sbjct: 587 EAENVLMEMSK 597



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDV-YDDMML-DGVQPTRDLFHSLIVGTMKGSRLQDT 95
           A  A  YN V+ SL   RR  L R + Y  +M+  G +P    F+SLIVG  + +++   
Sbjct: 150 APTAPTYNAVIRSLC--RRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVA 207

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M   GF  DV  Y  LI    +    D+A+ +F EM     +P+   Y  L+  
Sbjct: 208 RDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD----QPDMHMYAALVKG 263

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              A + +    ++R M   G       YA ++
Sbjct: 264 LCNAERGEEGLLMLRRMKELGWRPSTRAYAAVV 296



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 4/161 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRL 92
           R    NA  +N+++  L    +  +     + M+  G  P    + S I  +  MKGS  
Sbjct: 458 RGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS-- 515

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           Q+   F  +M      P    Y  +I    K +N     R + EM      P+  TY   
Sbjct: 516 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 575

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           + A    G+L+    ++ +M+  G  +D   Y  L+  H +
Sbjct: 576 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS 616



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 4/160 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +A +   Y T++  L    R     +++ +M     QP   ++ +L+ G     R ++
Sbjct: 217 RGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM----DQPDMHMYAALVKGLCNAERGEE 272

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +MK  G+ P    Y  ++    + + + +A  + +EM +  + P   T   ++N
Sbjct: 273 GLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVIN 332

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           A    G++     ++  M   G   + + Y  L+    N+
Sbjct: 333 AYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNE 372



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 49/123 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +++   +   Y  V+  L  +R + L+   + +M+  G  P    + + +       
Sbjct: 524 EMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEG 583

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL +      +M  NG   D   YN L+        +D A+ I ++M      PN  TY 
Sbjct: 584 RLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYF 643

Query: 151 CLL 153
            LL
Sbjct: 644 ILL 646



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 28  GAEEYARRNYANNASEYNTVVTSLTSQRRFF-LLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           G     + ++A +  +  T V S+ +Q  +F LLR +    +++ V P          G 
Sbjct: 613 GHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTP------AGV 666

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   L D F   D MK N FLP+   Y+ ++    +   +++A  +   MK+  +  N 
Sbjct: 667 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 726

Query: 147 QTYVCLLNA-CAAAGQLDPVYAIVRDMTAAG 176
             Y  L+   C +   LD  + +V  M   G
Sbjct: 727 DIYTALVTCFCKSKRYLD-AWVLVCSMIQHG 756


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 1/167 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + R  +   ++D+M   G++P    F +LI G  +  R+        QM 
Sbjct: 296 YSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQML 355

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+ +YN L++   K  + ++A ++ +EMK   +KP+  TY  L++     G L+
Sbjct: 356 TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLE 415

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               I + M   G  LD   +  LI+    +  R  D    + E+VE
Sbjct: 416 SAMEIRKGMNEEGVVLDNVAFTALISGFC-RDGRVRDAERTLREMVE 461



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     +      + +++++   G++PT   F++LI G  K   L + F  +  M+
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            N   PDV  Y+ LI   G CK    D A ++F+EM++  ++PNG T+  L++    + +
Sbjct: 286 ENRIYPDVFTYSVLIH--GLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRR 343

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           +D        M   G   D   Y  L+    N + +  D   K  +LV++ K    ++  
Sbjct: 344 MDSAMNTYHQMLTMGVKPDLVMYNTLL----NGLCKVGD-VNKARKLVDEMK-MVGMKPD 397

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAM 276
                  + G  KE   +L +A  +  R G     + + +VAF A     C + +   A 
Sbjct: 398 KITYTTLIDGYCKEG--DLESAMEI--RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            TL EM++   K  D    M  I  Y   G++  G K+ ++   +   P    Y  L+ G
Sbjct: 454 RTLREMVEAGMKPDDATYTMV-IDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 4/167 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    N   +  ++      RR     + Y  M+  GV+P   ++++L+ G  K 
Sbjct: 317 DEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKV 376

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +       D+MK  G  PD   Y  LI   G CK  D   A+ I + M +  V  +  
Sbjct: 377 GDVNKARKLVDEMKMVGMKPDKITYTTLID--GYCKEGDLESAMEIRKGMNEEGVVLDNV 434

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +  L++     G++      +R+M  AG   D   Y  +I  +  K
Sbjct: 435 AFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKK 481



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 5/141 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++   M  +GV      F +LI G  +  R++D      +M   G  PD A Y  +I   
Sbjct: 419 EIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVID-- 476

Query: 122 GKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK  N     ++ +EM+    KP   TY  L+N     GQ+     ++  M   G   
Sbjct: 477 GYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTP 536

Query: 180 DKFCYAGLITAHTNKIPRADD 200
           D   Y  L+  H  K  +A+D
Sbjct: 537 DDITYNILLEGHC-KNGKAED 556


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +L  +R     RD+  DM   G+ P +  ++ L+ G  +   L++     + M 
Sbjct: 251 YNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMT 310

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            N  LP V  YN L++  G C +   D+A RI +EM+K  V P+  TY  L++ C+    
Sbjct: 311 RNNLLPTVWTYNMLVN--GFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRD 368

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
              VY+++ +M   G   +   Y  ++     K    + T T
Sbjct: 369 SSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTT 410



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 6/155 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           N   YN +V       R  LL++   V + M  + + PT   ++ L+ G     ++ + F
Sbjct: 282 NKHTYNMLVCGYC---RLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAF 338

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             RD+M+    LPDV  YN LI  C + ++S +   + EEM K  VK N  TY  +L   
Sbjct: 339 RIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWM 398

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              G +      +  M   G   D   Y  LI A+
Sbjct: 399 CKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAY 433



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 151/384 (39%), Gaps = 18/384 (4%)

Query: 34  RRNYANNASEYNTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           R NY  N    NT++ SL    S     L R V  D +  GV P  + F+ LI G    S
Sbjct: 168 RLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLES 227

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +++D   + ++M   G +PD   YN ++    K +   +A  +  +MK   + PN  TY 
Sbjct: 228 KVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYN 287

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIEL 208
            L+      G L     ++  MT        + Y  L+    N  KI    D A +I + 
Sbjct: 288 MLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKI----DEAFRIRDE 343

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           +E+      V T     +         E+Y+L   E + ++G   + +   Y++      
Sbjct: 344 MEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSL--IEEMDKKGVKCNAV--TYNIILKWMC 399

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           +  ++    T L+ ++++  SPD       I  Y  +G +    ++ ++           
Sbjct: 400 KKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTW 459

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANY 388
              T++         K +  A + L + + R   L   +   +L++   +   G    N 
Sbjct: 460 TLNTILHCLC---VEKKLDEAYNLLCSASKRGYILD-EVSYGILILGYFKDEKGDRALN- 514

Query: 389 IWDLMQARKITPSLPAVEAYYNGL 412
           +WD M+ R+I PS     +   GL
Sbjct: 515 LWDEMKERQIMPSTITYNSVIGGL 538



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 124/314 (39%), Gaps = 24/314 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  + N   +   YNT++   +  R    +  + ++M   GV+     ++ ++    K 
Sbjct: 342 DEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKK 401

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + +     D+M+ NG  PD   YN LI    K     +A R+ +EM    +K +  T 
Sbjct: 402 GNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTL 461

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +L+      +LD  Y ++   +  G  LD+  Y  LI  +  K  + D       E+ 
Sbjct: 462 NTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYF-KDEKGDRALNLWDEMK 520

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL--------TVYH 261
           E+    S++        N ++G        L  +  V +    L+ +L        T Y+
Sbjct: 521 ERQIMPSTI------TYNSVIG-------GLCQSRKVDQAIDKLNEMLENGLVPDETTYN 567

Query: 262 VAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           +  H  C E    +A +   EM++   K PDVY     +R     G ++   K+F   + 
Sbjct: 568 IIIHGFCLEGNVEKAFQFHNEMIENLFK-PDVYTCNILLRGLCREGMLEKALKLFNTLVS 626

Query: 321 SEKFPPAELYATLV 334
             K      Y T++
Sbjct: 627 KGKDIDVVTYNTII 640



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++D+M    + P+   ++S+I G  +  ++       ++M  NG +PD   YN +I   
Sbjct: 514 NLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIH-- 571

Query: 122 GKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G C   N ++A +   EM +   KP+  T   LL      G L+    +   + + G  +
Sbjct: 572 GFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDI 631

Query: 180 DKFCYAGLITA 190
           D   Y  +I++
Sbjct: 632 DVVTYNTIISS 642


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 15/204 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TV+     + RF + RD+YD+M+   + P+   +  LI G  K  RL+  F +  +MK
Sbjct: 589 YTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMK 648

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  +N L+    K  N D+A R   +M++  + PN  +Y  L++      + +
Sbjct: 649 KRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWE 708

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR--ADDTATKIIELVEQSKGWSSVETS 221
            V  + ++M       D + +  L   H  K     A D++ K  E  +Q +G     +S
Sbjct: 709 EVVKLYKEMLDKEIEPDGYTHRALF-KHLEKDHESMALDSSGKQPEQQQQPRG-----SS 762

Query: 222 GNNAENEMMGVSKEELYNLPTAEY 245
           GN       G ++ +L   P  E+
Sbjct: 763 GN-------GEARLKLRRTPNEEH 779



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    + ++I G ++  R +      D+M +    P V  Y  LI    K    +QA
Sbjct: 581 GLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQA 640

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +   EMKK  V+PN  T+  LL+    AG +D  Y  +  M   G   +K+ Y  LI+ 
Sbjct: 641 FQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISK 700

Query: 191 HTN 193
           H +
Sbjct: 701 HCD 703



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 60/137 (43%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +   YNT++      R+F     ++DD+    + P+   +++LI G  +   L+    
Sbjct: 407 APDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQR 466

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +++M +    PDV  Y  L+    K  N   A  I++EM +  +KP+G  Y        
Sbjct: 467 LKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGEL 526

Query: 158 AAGQLDPVYAIVRDMTA 174
             G  +  + +  +M A
Sbjct: 527 RLGDSEKAFRLHEEMVA 543



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 61/326 (18%), Positives = 127/326 (38%), Gaps = 13/326 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  R+ +  +    N V+  L   R     ++VY+ M++ G+ PT   F++++    K 
Sbjct: 228 EKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKA 287

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+       +MK          YN LI+   K    ++A R   +M++        ++
Sbjct: 288 GDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSF 347

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+      G  D  + +  +M  AG       Y   I A   +  R DD      EL+
Sbjct: 348 NPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALC-EFGRIDDAR----ELL 402

Query: 210 EQSKGWSSVETSGNNAENEMM-GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
                 SS+      + N +M G  K   +   +  +   + G ++  +  Y+       
Sbjct: 403 ------SSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLC 456

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           E  +++  + L E +      PDV      ++ ++ +G++    +++++ +     P   
Sbjct: 457 ESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGY 516

Query: 329 LYATLVEGAM-FGYTPKGMQLAQDTL 353
            Y T   G +  G + K  +L ++ +
Sbjct: 517 AYTTRTVGELRLGDSEKAFRLHEEMV 542


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   Y  ++      +        +++M+  G +P     H+++ G +K  +  D  
Sbjct: 368 FTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAI 427

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + MKA G  P+V  Y  LI    K     +A+  F+EM     +P+   Y CL+   
Sbjct: 428 KLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGF 487

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
               ++D VYA++++M   G   D   Y  LI   TN+  +  D A +I + + Q+   S
Sbjct: 488 GNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNR--QMPDDAVRIYKKMIQNGIQS 545

Query: 217 SVET 220
           ++ T
Sbjct: 546 TLHT 549



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 9/176 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++  L  Q +     + +D+M+  G QP   ++  LI G     ++   +   
Sbjct: 441 NVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALL 500

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK  G   D   YN LI +    +  D A+RI+++M +  ++    TY  ++ +    
Sbjct: 501 KEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYT 560

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCY----AGLITAHTNKIPRADDTATKIIELVEQ 211
              +   A+  +M   G   D   Y     GLI     +  R+++    + E++E+
Sbjct: 561 RNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLI-----RHGRSEEACRYLEEMIEK 611


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 11  HKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           H  + GA+   FF       E   +    NA  Y  ++ +  +        +++D+M+  
Sbjct: 464 HGRINGAV--EFF------NEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA 515

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           G  P   ++++LI G  +  +L    F   +MK  GF PD+  +N LI+  G C+ +  D
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLIN--GFCRKNKLD 573

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A  + +EM+   +KP+G TY  L++  +  G     + +++ M   G       Y  LI
Sbjct: 574 EAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALI 633

Query: 189 TAH 191
            A+
Sbjct: 634 HAY 636



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 105/287 (36%), Gaps = 41/287 (14%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++            R+++D M  DGV P     ++L+ G  K  R+     F 
Sbjct: 415 NTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFF 474

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M+  G   +   Y  LI       N ++A+ +F+EM +    P+   Y  L++  + A
Sbjct: 475 NEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQA 534

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+LD    ++  M  AG   D   +  LI     K         K+ E  E  K      
Sbjct: 535 GKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRK--------NKLDEAYEMLK------ 580

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
                 E E  G+  + +                      Y+      ++  D      L
Sbjct: 581 ------EMENAGIKPDGV---------------------TYNTLISHFSKTGDFSTAHRL 613

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
           ++ + K+   P V      I  Y  +G++D   K+F D   + K PP
Sbjct: 614 MKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPP 660



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 13  SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           S  G L R  FV S   E      ++ +   +N ++     + +     ++  +M   G+
Sbjct: 532 SQAGKLDRASFVLSKMKEA----GFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGI 587

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    +++LI    K            +M   G +P V  Y  LI       N D+A++
Sbjct: 588 KPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMK 647

Query: 133 IFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           IF +M    +V PN   Y  L+N+     Q+D   +++ DM   G
Sbjct: 648 IFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKG 692



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 1/138 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YNT+++  +    F     +   M+ +G+ PT   + +LI        L +    FRD  
Sbjct: 594 YNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMS 653

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             +   P+  +YN LI+   +    D A+ + ++MK   VKPN  T+  +         L
Sbjct: 654 STSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWL 713

Query: 163 DPVYAIVRDMTAAGAGLD 180
              + ++  MT      D
Sbjct: 714 SKAFELMDRMTEHACNPD 731



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 156/416 (37%), Gaps = 51/416 (12%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A+  N ++T+L   R F  +  +  +M    +QP    F  LI    K  R+ +     +
Sbjct: 305 AASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFE 364

Query: 101 QM---KANGFL--PDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLN 154
           +M   ++NGFL  PDV  YN LI    K    ++ + + E M+ +    PN  TY CL++
Sbjct: 365 KMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLID 424

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAGLITAHTNKIPRADDTATK- 204
               A  ++    +   M   G           +D  C  G I               K 
Sbjct: 425 GYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKG 484

Query: 205 -IIELVEQSKGWSSVETSGNNAE------NEMM--GVSKEELY------NLPTAEYVHRR 249
             +      + + +V    NN E      +EM+  G S + +        L  A  + R 
Sbjct: 485 NAVTYTALIRAFCNV----NNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRA 540

Query: 250 GGFLSRL--------LTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
              LS++        +  ++V  +  C + K  +A E L EM     K PD       I 
Sbjct: 541 SFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIK-PDGVTYNTLIS 599

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSR 359
            +  +GD    H++ +  +     P    Y  L+    + G   + M++ +D      S 
Sbjct: 600 HFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDM-----SS 654

Query: 360 NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415
              + P      +L+ +  +      A  + D M+ + + P+     A + GL+++
Sbjct: 655 TSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEK 710



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++ SL  + +  L   + DDM + GV+P  + F+++  G  + + L   F   
Sbjct: 661 NTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELM 720

Query: 100 DQMKANGFLPD 110
           D+M  +   PD
Sbjct: 721 DRMTEHACNPD 731


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 14/273 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +++++ SL ++ R     DV++ ++  G +PT   F+SLI G     +++  F   
Sbjct: 544 NIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 603

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D M + G  PDV  YN L+S  G CK+   D  + +F EM   +VKP   TY  +L+   
Sbjct: 604 DAMVSVGIEPDVVTYNTLVS--GYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLF 661

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            AG+      +  +M  +G  +D   Y  L+          +D   + I L  +      
Sbjct: 662 HAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR-----NDLTDEAITLFHKLGAMDC 716

Query: 218 V--ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
               T  N   N +  V + E  N   A       G +  + T Y V  H   +   V+ 
Sbjct: 717 KFDITILNTVINALYKVRRREEANDLFAAI--STSGLVPNVST-YGVMIHNLLKEGSVEE 773

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
            +T+   ++K   +P   ++   IR  L  GDI
Sbjct: 774 ADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 806



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 147/385 (38%), Gaps = 16/385 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKG 89
           E  ++    +   YN++V +L   R       V   M+  GV+P    + ++I G +  G
Sbjct: 289 EMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSG 348

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +    FR +M + G +P +  +N  +S   K   S  A  IF+ M      P+  +Y
Sbjct: 349 HWKESAKMFR-KMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSY 407

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             LL+  A  G+   +  +   M   G   +  C+  LI+AH  +    D+      E+ 
Sbjct: 408 SILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKR-GMMDEAMLVFTEMQ 466

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CA 268
            Q      V  S   +    MG   + +        +      L     VYH   H  C 
Sbjct: 467 GQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIG-----LEPNTVVYHSLIHGFCM 521

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
               V+A E + EM+ K    P++      I    + G + + H VF   I     P   
Sbjct: 522 HGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIV 581

Query: 329 LYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            + +L++G  + G   K   +  D +V++      + P + +   LV+   KSG      
Sbjct: 582 TFNSLIDGYCLVGKMEKAFGVL-DAMVSVG-----IEPDVVTYNTLVSGYCKSGKIDDGL 635

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            ++  M  +K+ P+        +GL
Sbjct: 636 ILFREMLHKKVKPTTVTYSIVLDGL 660



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFF 97
           NA  YNTV+ SL    R     D+   M  +G + + D+  F+++I G  K   +     
Sbjct: 226 NAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACN 285

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             ++M   G  PDV  YN ++    K +  D+A  +  +M    V+P+G TY  +++  +
Sbjct: 286 LINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYS 345

Query: 158 AAGQLDPVYAIVRDMTAAG 176
            +G       + R MT+ G
Sbjct: 346 CSGHWKESAKMFRKMTSKG 364



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 43  EYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           E NT +  L   +R     DV    M D G  P    ++++I      SR Q+      +
Sbjct: 193 EANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQR 252

Query: 102 MKANG--FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           M   G    PDV  +N +I    K     +A  +  EM +  V+P+  TY  +++A   A
Sbjct: 253 MAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKA 312

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
             +D    ++R M   G   D   Y  +I  ++
Sbjct: 313 RAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYS 345


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 6/184 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R     N   + +++     + +    ++V   M   G++P   +F +L+ G     
Sbjct: 229 EDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAG 288

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           ++ D +   + M+  G+ P+   Y  LI ++C   K  D+A+R+F EM++Y  + +  TY
Sbjct: 289 KMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTY 348

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++     G +D  Y+++ DM   G    +  Y  ++ AH  K     +   + +EL+
Sbjct: 349 TALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKK-----EQFEECLELI 403

Query: 210 EQSK 213
           E+ K
Sbjct: 404 EKMK 407



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 8/174 (4%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           L+Q++ R  K +  A+  R FV      E  R     +   Y  +++             
Sbjct: 315 LIQALCRTEKRMDEAM--RVFV------EMERYGCEADIVTYTALISGFCKWGMIDKGYS 366

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V DDM   GV P++  +  ++V   K  + ++     ++MK  G  PD+ +YN +I +  
Sbjct: 367 VLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLAC 426

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
             +   +A+R++ EM+   + P    +V ++N   + G L    +  ++M + G
Sbjct: 427 NFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRG 480



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 13/191 (6%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG--- 71
            G LG RFF+ +       +  Y ++     ++V  L+  R+F  +  + ++M  +    
Sbjct: 113 AGNLGYRFFLWAT-----KQPGYCHSYEVCKSMVKILSKMRQFGAVWGLIEEMRKENPEL 167

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           ++P  +LF  LI      + ++      D+M   GF PD  V+  L+    K  +   A 
Sbjct: 168 IEP--ELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDAS 225

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT-- 189
           ++FE+M++ ++ PN + +  LL      G+L     ++  M  AG   D   +  L++  
Sbjct: 226 KVFEDMRE-KIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGY 284

Query: 190 AHTNKIPRADD 200
           AH  K+  A D
Sbjct: 285 AHAGKMADAYD 295



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           D+ +DM   G +P  + +  LI    +   R+ +      +M+  G   D+  Y  LIS 
Sbjct: 295 DLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 354

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+   + ++M+K  V P+  TY+ +L A     Q +    ++  M   G   D
Sbjct: 355 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPD 414

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
              Y  +I    N             E+ E  + W+ +E +G
Sbjct: 415 LLIYNVVIRLACN-----------FREVKEAVRLWNEMEANG 445


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 134/341 (39%), Gaps = 52/341 (15%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A  EE A R    +A  YN V++ L  + +    R +++ M+   + P    +++LI G 
Sbjct: 30  ATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGL 89

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKP 144
            K  R++  +    +M   G++P    YN LI   G CK  D   A  +F++M +    P
Sbjct: 90  CKAWRIETAYELFKEMAGKGYVPTEVSYNTLID--GFCKKKDLVAAKDVFDKMVRSNCVP 147

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           N  TY  L++  + +G++     ++  M   G   +   Y+ LI     K+ R D+    
Sbjct: 148 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC-KVRRVDEAHKL 206

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
           + ++V Q                   G++       PT              +  Y++  
Sbjct: 207 LEQMVTQ-------------------GIA-------PT--------------VVTYNILL 226

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
           ++      ++    L   + + R  P V      +R   H   +D  H+++ + I     
Sbjct: 227 NSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCP 286

Query: 325 PPAELYATLVEGAMFGYTPKG-MQLAQDTLVNM--NSRNIF 362
           P A  Y TL     +G T  G +  AQ+ +  M    RN F
Sbjct: 287 PDAITYDTLA----WGLTRAGKVHEAQELMEKMKLTKRNPF 323


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 114/297 (38%), Gaps = 6/297 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN V+  L    R      V  +M   G  P    +++L+ G  K           
Sbjct: 272 NLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLH 331

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  NG  PDV  Y  LI+   K  N ++A+  F++M    ++PNG TY  L+N  +  
Sbjct: 332 SEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQK 391

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G +D  Y I  +M  +G       Y  L+  H   +    + A  ++  +E  KG S   
Sbjct: 392 GFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHC--VSGRMEEAIGLLRGME-GKGLSPDV 448

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
            S +          + +      AE V +  G     +T   +    C + +  +A +  
Sbjct: 449 VSYSTIIAGFCRYQELDRAFQMNAEMVEK--GVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            EML K    PD +     I  Y   GD++    + ++ I     P    Y  L+ G
Sbjct: 507 QEMLNKSLL-PDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLING 562



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRR----FFLLRDVYDDMMLDGVQ 73
           +G RFF      EE  R     N   YNTV+ +    +R    F LLR     M L+G++
Sbjct: 221 MGLRFF------EEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRS----MGLEGLE 270

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    ++ +I G  +  R+++T     +M   GF PD   YN L++   K  N  QA+ +
Sbjct: 271 PNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVL 330

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             EM +  + P+  TY  L+N    AG L+        M   G   +   Y  LI   + 
Sbjct: 331 HSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQ 390

Query: 194 K 194
           K
Sbjct: 391 K 391



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 2/185 (1%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           TS    E  R+ +A +   YNT+V        F     ++ +M+ +G+ P    + SLI 
Sbjct: 292 TSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLIN 351

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
              K   L     F DQM   G  P+   Y  LI+   +    D+A RI++EM +    P
Sbjct: 352 TMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPP 411

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTA 202
              TY  LLN    +G+++    ++R M   G   D   Y+ +I       ++ RA    
Sbjct: 412 TIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMN 471

Query: 203 TKIIE 207
            +++E
Sbjct: 472 AEMVE 476



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 11/158 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +  + +A  Y++++  L  QRR     D++ +M+   + P    + SLI G  K  
Sbjct: 473 EMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG 532

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L +     D+M   GFLPD   YN LI+   K   + +A R+  ++   E  PNG TY 
Sbjct: 533 DLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYD 592

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+ +C+   +   V A+++           FC  GL+
Sbjct: 593 TLIESCSDI-EFKSVVALIKG----------FCMKGLM 619



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRD-VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YN ++ S+   R+  +  + VY +M+  GV      ++ LI G      L+    F ++M
Sbjct: 170 YNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEM 229

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           + N  LP+V  YN +I    K K  D+A ++   M    ++PN  TY  ++N     G++
Sbjct: 230 ERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRI 289

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +    ++ +M   G   D   Y  L+  +
Sbjct: 290 EETSGVLAEMDRKGFAPDGVTYNTLVNGY 318



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 4/160 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R     +   Y +++ ++          + +D M + G++P    + SLI G  +  
Sbjct: 333 EMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKG 392

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
            + + +   D+M  +GF P +  YN L++  G C +   ++AI +   M+   + P+  +
Sbjct: 393 FMDEAYRIWDEMIRSGFPPTIVTYNALLN--GHCVSGRMEEAIGLLRGMEGKGLSPDVVS 450

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           Y  ++       +LD  + +  +M   G   D   Y+ LI
Sbjct: 451 YSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLI 490



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 1/138 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    + ++I G  +   L   F    +M   G  PD   Y+ LI    + +  ++A
Sbjct: 443 GLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEA 502

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +F+EM    + P+  TY  L+N     G L+    +  +M   G   D   Y  LI  
Sbjct: 503 CDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLING 562

Query: 191 HTNKIPRADDTATKIIEL 208
             NK  R  +    +++L
Sbjct: 563 -LNKQARTREAKRLLLKL 579



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 21/161 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF-----FLLRDVYDDMMLDGV------QPTRDL 78
           +E  ++ +  +   YN ++  L  Q R       LL+  YD+ + +G+      +   D+
Sbjct: 542 DEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDI 601

Query: 79  FHSLIVGTMKGSRLQDTF-----FFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAI 131
               +V  +KG  ++         F   +K N   P+ AVYN +I   G C+  N  +A 
Sbjct: 602 EFKSVVALIKGFCMKGLMNEADQVFESMIKRNQ-KPNEAVYNVIIH--GHCRDGNVHKAH 658

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           ++++EM  +   P+  T + L+ A  + G  + +  ++RD+
Sbjct: 659 KLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDI 699



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 105/277 (37%), Gaps = 50/277 (18%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCK---------------------------------- 125
           D  K NGF+P V  YN ++    +C+                                  
Sbjct: 156 DLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCA 215

Query: 126 --NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N +  +R FEEM++    PN  TY  ++ A     ++D  + ++R M   G   +   
Sbjct: 216 AGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLT 275

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
           Y  +I     ++ R ++T+  + E+    KG++    + N   N    V      N   A
Sbjct: 276 YNMVINGLC-RVGRIEETSGVLAEM--DRKGFAPDGVTYNTLVNGYCKVG-----NFHQA 327

Query: 244 EYVHR---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
             +H    R G    ++T   +    C      +AME   +M  +  + P+       I 
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLR-PNGVTYTSLIN 386

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAEL-YATLVEG 336
            +   G +D  ++++++ I S  FPP  + Y  L+ G
Sbjct: 387 GFSQKGFMDEAYRIWDEMIRS-GFPPTIVTYNALLNG 422


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 156/398 (39%), Gaps = 38/398 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++S      +    +V+++M   G  P +  +++L+    K  R ++      +M+
Sbjct: 294 YNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEME 353

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+GF P +  YN LIS   +    D+A+ +  +M K  +KP+  TY  LL+     G+ D
Sbjct: 354 ASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDD 413

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT----KIIELVEQSKGWSSVE 219
               +  +M  AG   +   +  LI  H N+    +        KI E V     W+++ 
Sbjct: 414 YAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLL 473

Query: 220 T--SGNNAENEMMGVSKE--------ELYNLPTAEYVHRRGGFLSRL------------- 256
                N  ++E+ GV KE        E     T    + R GF  +              
Sbjct: 474 AVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVT 533

Query: 257 --LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             L+ Y+    A A     +  E +L  +K  R  P+       +  Y +  +++    +
Sbjct: 534 PDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSAL 593

Query: 315 FEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLV 374
            E+       P A L  TLV      Y+   + L +     +  R    SP + +   +V
Sbjct: 594 AEEIYSGIIEPQAVLLKTLV----LVYSKSDL-LTETERAFLELREQGFSPDITTLNAMV 648

Query: 375 AAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           +   +    +  N I + ++    TPSL      YN L
Sbjct: 649 SIYGRRRMVSKTNEILNFIKDSGFTPSLTT----YNSL 682



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 10/257 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD F++LI    +            +M   G  PD++ YN +++   
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +Q+ ++  EMK    KPN  TY  LL+A A   +++ + A+  ++ +        
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
               L+  ++ K     +T    +EL EQ  G+S   T+     N M+ +         T
Sbjct: 608 LLKTLVLVYS-KSDLLTETERAFLELREQ--GFSPDITT----LNAMVSIYGRRRMVSKT 660

Query: 243 AEYVH--RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
            E ++  +  GF   L T Y+   +  +  +  +  E +L  +      PD+      I 
Sbjct: 661 NEILNFIKDSGFTPSL-TTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIF 719

Query: 301 CYLHSGDIDNGHKVFED 317
            Y  +G +    ++F +
Sbjct: 720 AYCRNGRMKEASRIFAE 736



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 44/273 (16%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           +++ L  + R      +  D+  DGV      + SLI       R ++      +++  G
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIR-IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
             P +  YN +++V GK       I  + + MK   V P+  TY  L+++C      +  
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAH-TNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
             +  +M AAG   DK  Y  L+  +  ++ PR    A ++++ +E S    S+ T    
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE---AMEVLKEMEASGFAPSIVT---- 363

Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
                        YN   + Y   R G L                    +AME   +M+K
Sbjct: 364 -------------YNSLISAYA--RDGLLD-------------------EAMELKSQMVK 389

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           K  K PDV+     +  +  +G  D   KVFE+
Sbjct: 390 KGIK-PDVFTYTTLLSGFEKTGKDDYAMKVFEE 421



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  + + YN+++   +    F    D+  +++  G++P    F+++I    +  R+++  
Sbjct: 672 FTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +MK  G  PDV  YN  I+         +AI + + M K E KPN  TY  L++  
Sbjct: 732 RIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWF 791

Query: 157 AAAGQLDPVYAIVRDM 172
               + D   + + ++
Sbjct: 792 CKLNRRDEANSFISNL 807


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 198 YSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQML 257

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 258 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGD 315

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 316 LDTAFEHRKRMIQENTRLDDVVYTALISG 344



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GVQP    +  LI G  K S++ D     D+M   G +P+   +  LI   G CKN
Sbjct: 186 MLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLID--GHCKN 243

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L   + ++ +M+  G   DK  Y
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITY 303

Query: 185 AGLI 188
             LI
Sbjct: 304 TTLI 307



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 130/313 (41%), Gaps = 18/313 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 173

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PN  
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKIDDANELFDEMLVKGLVPNSV 231

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T+  L++     G++D    I + M +     D   Y  LI     K       A  +I+
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ--AHHLID 289

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFL--SRLLTVYHVAFH 265
            +   KG    + +     +   G  K+   +L TA + HR+      +RL  V + A  
Sbjct: 290 EMSM-KGLKPDKITYTTLID---GCCKDG--DLDTA-FEHRKRMIQENTRLDDVVYTALI 342

Query: 266 A--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
           +  C E   V A + L EML    K PD       I  +   GD+  G K+ ++      
Sbjct: 343 SGLCREGXSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 401

Query: 324 FPPAELYATLVEG 336
            P    Y  L+ G
Sbjct: 402 VPSVVTYNVLMNG 414


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFEHRKRMIQENTRLDDVVYTALISG 361



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GVQP    +  LI G  K S++ D     D+M   G +P+   +  LI   G CKN
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLID--GHCKN 260

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L   + ++ +M+  G   DK  Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITY 320

Query: 185 AGLI 188
             LI
Sbjct: 321 TTLI 324



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 18/313 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PN  
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKIDDANELFDEMLVKGLVPNSV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T+  L++     G++D    I + M +     D   Y  LI     K       A  +I+
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ--AHHLID 306

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFL--SRLLTVYHVAFH 265
            +   KG    + +     +   G  K+   +L TA + HR+      +RL  V + A  
Sbjct: 307 EMSM-KGLKPDKITYTTLID---GCCKDG--DLDTA-FEHRKRMIQENTRLDDVVYTALI 359

Query: 266 A--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
           +  C E + V A + L EML    K PD       I  +   GD+  G K+ ++      
Sbjct: 360 SGLCREGQSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGH 418

Query: 324 FPPAELYATLVEG 336
            P    Y  L+ G
Sbjct: 419 VPSVVTYNVLMNG 431


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R++   +    NT++ SL    +    RDV+D M + G  P    +  ++ G    
Sbjct: 315 KEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  PD+  +N LI     C   D+A+ IF EM+ + VKP+  TY
Sbjct: 375 GCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTY 434

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + ++ A    G++D        M   G   DK+ Y  LI
Sbjct: 435 MTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLI 473



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 62/151 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+     +       D++ +M+  G+ P    + S++    K   +     F  QM 
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMV 283

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD   YN LI          +A+R+F+EM++  + P+      L+ +    G++ 
Sbjct: 284 NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK 343

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               +   M   G   D F Y  ++  +  K
Sbjct: 344 EARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 67/142 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + +++ +L    R    ++++D  +  G+ P   +++ L+ G     +++      D M 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+V  Y  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 623

Query: 164 PVYAIVRDMTAAGAGLDKFCYA 185
           P      +MT +G  ++K  Y+
Sbjct: 624 PAKVKFHEMTESGIAMNKCTYS 645



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++    +       +++  ++M +G++     F S+I    K  R+ D     D   
Sbjct: 469 YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTV 528

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD  VYN L+         ++A+R+F+ M    ++PN   Y  L+N     G++D
Sbjct: 529 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 588

Query: 164 PVYAIVRDMTAAG 176
              ++ R+M   G
Sbjct: 589 EGLSLFREMLQKG 601



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y++VV +L   R           M+  GV P    +++LI G    
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + ++      +M+    LPDV   N L+    K     +A  +F+ M      P+  +Y
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 364

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +LN  A  G L  +  +   M   G   D + +  LI A+ N
Sbjct: 365 TIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYAN 408



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 6/209 (2%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PDV  YN +I    K  + ++A  +F+EM +  + P+  TY  +++A   A  +D   A 
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAF 278

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENE 228
           +R M   G   D + Y  LI  +++   +  +      E+  QS     V  +       
Sbjct: 279 LRQMVNKGVLPDNWTYNNLIYGYSST-GQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 229 MMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288
             G  KE      T     +     S  + +   A   C  L D   M  L +++  D  
Sbjct: 338 KYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC--LVD---MTDLFDLMLGDGI 392

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           +PD+Y     I+ Y + G +D    +F +
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNE 421



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 3/176 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFFRDQM 102
           Y TV+ +L    +     + ++ M+  GV P +  +H LI G    GS L+      + M
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIM 493

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             NG   D+  +  +I+   K      A  IF+      + P+   Y  L++     G++
Sbjct: 494 N-NGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 552

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
           +    +   M +AG   +   Y  L+  +  KI R D+  +   E++++    S++
Sbjct: 553 EKALRVFDAMVSAGIEPNVVGYGTLVNGYC-KIGRIDEGLSLFREMLQKGIKPSTI 607


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD+  Y  LI+ 
Sbjct: 333 LDSAFEHRKRMIQENIRLDEVAYTALISG 361



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 131/317 (41%), Gaps = 26/317 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          L + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A     ++
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
            ++ ++  K   +    G   E ++             + + HR+   +   + +  VA+
Sbjct: 309 SVKGLKPDKITYTTLIDGCCKEGDL------------DSAFEHRK-RMIQENIRLDEVAY 355

Query: 265 HA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
            A     C E + V A + L EML    K PD       I  +   GD+  G K+ ++  
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414

Query: 320 CSEKFPPAELYATLVEG 336
                P    Y  L+ G
Sbjct: 415 RDGHVPSVVTYNVLMNG 431


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +  +   YN ++ SL ++R+  L   V D ++LD   PT   +  LI  T+    + +
Sbjct: 166 RGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINE 225

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCL 152
                ++M A G LPD+  YN +I   G CK    D+  ++  EM     +PN  TY  L
Sbjct: 226 AMKLLEEMLARGLLPDMYTYNAIIR--GMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSIL 283

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +++    G++D   ++++ M       D + Y  LI+A
Sbjct: 284 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISA 321



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAI 131
           +P    ++++I G  K +R++      ++MKA GFLPD+  YN +I S+C + +    A+
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR-RKLGLAL 192

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++ +++      P   TY  L+ A    G ++    ++ +M A G   D + Y  +I
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 249



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           AE ++R    N  + Y+ +++SL    R      V   M+   + P    +  LI    K
Sbjct: 266 AEMFSRGCEPNKVT-YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 324

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
             RL       D M +NG LPD+  YN +++   K  N++QA+ IF +++     PN
Sbjct: 325 EGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPN 381



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V++      R      V + M   G  P    ++ +I       +L       DQ+ 
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLL 199

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +  +P V  Y  LI         ++A+++ EEM    + P+  TY  ++      G  D
Sbjct: 200 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWD 259

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
               +V +M + G   +K  Y+ LI++   +  R D+  + +  ++E+
Sbjct: 260 EGEKLVAEMFSRGCEPNKVTYSILISSLC-RFGRIDEAISVLKVMIEK 306


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD+  Y  LI+ 
Sbjct: 333 LDSAFEHRKRMIQENIRLDEVAYTALISG 361



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 131/317 (41%), Gaps = 26/317 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          J + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A     ++
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
            ++ ++  K   +    G   E ++             + + HR+   +   + +  VA+
Sbjct: 309 SVKGLKPDKITYTTLIDGCCKEGDL------------DSAFEHRK-RMIQENIRLDEVAY 355

Query: 265 HA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
            A     C E + V A + L EML    K PD       I  +   GD+  G K+ ++  
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGXKLLKEMQ 414

Query: 320 CSEKFPPAELYATLVEG 336
                P    Y  L+ G
Sbjct: 415 RDGHVPSVVTYNVLMNG 431


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V++           DV + M   G +P    ++ L  G  +  ++ + F  +D+M+
Sbjct: 282 YNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEME 341

Query: 104 ANGFL-PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             G + PDV  YN L+  C KC+ S  A+ + EEM++  VK +  T+  ++      GQL
Sbjct: 342 QLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQL 401

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +     +  MT  G   D   Y  LI A
Sbjct: 402 EEALGRLEMMTEEGLTPDVITYNTLIDA 429



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    + S YNT++  L++  +     D  +++M  G+ P    ++ +I    K 
Sbjct: 514 DEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKE 573

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+  F F ++M  N F PDV   N L++        ++A+++FE   +   K +  TY
Sbjct: 574 GDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITY 633

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+ A      +D       DM   G   D F Y  L++A
Sbjct: 634 NTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSA 674



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 29  AEEYAR----RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AEE  R    R +  +   Y TV+ +   + +      ++D+M+   + P+   +++LI 
Sbjct: 474 AEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIK 533

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G     +L +     +++   G +PD   YN +I    K  + ++A +   +M +   KP
Sbjct: 534 GLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKP 593

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +  T   L+N     G+L+    +       G  +D   Y  LI A
Sbjct: 594 DVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQA 639



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 139/359 (38%), Gaps = 26/359 (7%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D +  ++   + P    F+ L+        L D      +M+  G  PD   YN L++  
Sbjct: 195 DAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAH 254

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            +     +A  +   MKK  + P   TY  L++A A  G +     +V  MTA G   D 
Sbjct: 255 CRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDL 314

Query: 182 FCY----AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
           + Y    AGL  A   K+    D A K+ + +EQ  G  S +    N   +     +   
Sbjct: 315 WTYNVLAAGLCQA--GKV----DEAFKLKDEMEQ-LGIVSPDVVTYNTLVDACFKCQRSS 367

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
             L   E + R  G  S L+T   +    C E +  +A+   LEM+ ++  +PDV     
Sbjct: 368 DALNLLEEM-REKGVKSSLVTHNIIVKGLCREGQLEEALGR-LEMMTEEGLTPDVITYNT 425

Query: 298 NIRCYLHSGDIDNGHKVFEDYICS----EKFPPAELYATLVEGAMFGYTPKGMQLAQDTL 353
            I     +G++     + ++ + S    + F    L   L +        K  + A++ L
Sbjct: 426 LIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK-------EKRYEEAEELL 478

Query: 354 VNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
                R     P   S   ++AA  K      A  +WD M  RK+TPS+        GL
Sbjct: 479 RAPPQRGFV--PDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGL 535



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V +    +R     ++ ++M   GV+ +    + ++ G  +  +L++     + M 
Sbjct: 353 YNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMT 412

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL-NAC 156
             G  PDV  YN LI    K  N  +A  + +EM +  +K +  T   LL N C
Sbjct: 413 EEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLC 466


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           +R   A N+  YN ++      +       ++ +M   G+ P +  ++SLI G  K  R+
Sbjct: 325 SRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRI 384

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
              +   D+M  N    D+  YN LI V  K ++ D+AI + +++K++ ++PN  TY  L
Sbjct: 385 PYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNIL 444

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++     GQL     + +D+   G  ++ + Y  +I  
Sbjct: 445 IDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMING 482



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +N   +A  +N +V +L  + +    ++V   MM +GV+PT   +++L+ G    +
Sbjct: 253 EMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVN 312

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +         +      P+   YN +I+   K K  D+A+ +F EM    + P+  TY 
Sbjct: 313 EVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYN 372

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L++    AG++   + +V +M       D   Y  LI
Sbjct: 373 SLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLI 410



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 9/142 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T++  L   +       +Y +M++  + PT   F SLI G     + +D F   
Sbjct: 192 NVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLF 251

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY------VCLL 153
           ++M      PD   +N L+    K     +A  +   M K  V+P   TY       CL+
Sbjct: 252 NEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLV 311

Query: 154 NACAAAGQLDPVYAIVRDMTAA 175
           N     G+   V +I+  M  A
Sbjct: 312 N---EVGKAKHVLSIISRMRVA 330



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 8/168 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R  A +   YN+++  L    R     ++ D+M  + +      ++SLI    K  
Sbjct: 358 EMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQ 417

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEM--KKYEVKPNG 146
            +        ++K +G  P++  YN LI   G CK      A  +F+++  K Y V  N 
Sbjct: 418 HVDKAIALVKKIKEHGIQPNMCTYNILID--GLCKGGQLKNAQDVFQDLLIKGYNV--NA 473

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            TY  ++N     G  D    ++  M   G   D   Y  +I A  +K
Sbjct: 474 WTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHK 521



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/98 (21%), Positives = 42/98 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L    +    +DV+ D+++ G       ++ +I G  K     +     
Sbjct: 437 NMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLL 496

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            +M+ NG +PD   Y  +I        +++A ++  EM
Sbjct: 497 SKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREM 534


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++           R ++ +M   G  P+   ++ +I G  K   +++   FR
Sbjct: 212 NYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFR 271

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+  GF+PDV  Y  L+   G C N   D A+++FEEMK+   +PN   Y  L++  A
Sbjct: 272 KEMEKKGFVPDVYTYASLVH--GHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLA 329

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTN 193
             G+ +  + +  DM  AG   D   Y+ L+ + HT+
Sbjct: 330 KEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTD 366



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEE 136
           +++L  G  + +RL +       M   G +P+   Y  LIS+   CK+ D  +A R+F E
Sbjct: 181 YNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISI--HCKDGDMVEARRLFRE 238

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           M +    P+  TY  +++  A  G +       ++M   G   D + YA L+  H   + 
Sbjct: 239 MAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHC--VN 296

Query: 197 RADDTATKIIELVEQ 211
              D A K+ E ++Q
Sbjct: 297 GKVDVALKLFEEMKQ 311



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 121/333 (36%), Gaps = 59/333 (17%)

Query: 78  LFHSLIV-GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
           L  S++V G  K  R+ D     D M  +G   +   YN L+    + K+  +   I E 
Sbjct: 15  LAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI 74

Query: 137 MKKYE------------------------VKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           M+                           V+PN +TY  L+N     GQ++    ++ DM
Sbjct: 75  MENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADM 134

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA------- 225
              G GL++  +  +I  +  K     D A KI   +E+      + T    A       
Sbjct: 135 QGQGVGLNQIIFNTMIDGYCRK--GMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVN 192

Query: 226 ---ENEMMGVSKEELYNLP------TAEYVHRRGGFL---SRL------------LTVYH 261
              E + +     E+  +P      T   +H + G +    RL            +  Y+
Sbjct: 193 RLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYN 252

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
           V  H  A+   ++  E   + ++K    PDVY     +  +  +G +D   K+FE+    
Sbjct: 253 VMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQR 312

Query: 322 EKFPPAELYATLVEG-AMFGYTPKGMQLAQDTL 353
              P    Y  L+ G A  G +    QL  D L
Sbjct: 313 GTEPNVVAYTALISGLAKEGRSEAAFQLYDDML 345



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           DM   GV   + +F+++I G  +   + D    +  M+  G   D+  YN L   CG C+
Sbjct: 133 DMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTL--ACGLCR 190

Query: 126 NS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
            +  D+A  +   M +  V PN  TY  L++     G +     + R+M   GA      
Sbjct: 191 VNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVT 250

Query: 184 YAGLITAHTNK 194
           Y  +I  +  K
Sbjct: 251 YNVMIHGYAKK 261



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 18/278 (6%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V D+ + +GV+P    +  LI G  K  +++        M+  G   +  ++N +I   G
Sbjct: 95  VLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMID--G 152

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C+    D A++I   M+K  V+ +  TY  L        +LD    ++  M   G   +
Sbjct: 153 YCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPN 212

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM-GVSKEELYN 239
              Y  LI+ H       +  A ++   + +     SV T      N M+ G +K+   +
Sbjct: 213 YVTYTTLISIHCKDGDMVE--ARRLFREMAEKGATPSVVTY-----NVMIHGYAKKG--S 263

Query: 240 LPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVM 296
           +  AE   +   + GF+  + T   +    C   K V     L E +K+    P+V    
Sbjct: 264 IREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGK-VDVALKLFEEMKQRGTEPNVVAYT 322

Query: 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
             I      G  +   ++++D + +   P   LY+ LV
Sbjct: 323 ALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 360


>gi|168014765|ref|XP_001759922.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689052|gb|EDQ75426.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 141/328 (42%), Gaps = 37/328 (11%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++ ++   R       V   M   GV+P    F +L+ G  +  +L        +M+
Sbjct: 306 FNALLRAVVEGRGVSHALRVVRSMEAVGVRPDTHTFTTLLDGYSRSGKLDKAEALLAKME 365

Query: 104 AN--GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA-AG 160
            +     P +  YN LI  C    + ++A+R+F +MK+    P+  TY  LL+AC A +G
Sbjct: 366 DSKPNQRPSIYTYNILIKACASKNDPERALRVFAKMKESGTAPDSHTYCALLSACGAVSG 425

Query: 161 QLD------------PVYAIVRDMTAAG---------AGLDKFCYAGLITAHTNKIPRAD 199
           + D             V AI +DM  +G         A +      G++ A    +    
Sbjct: 426 RPDLSDAWSRKEVAQRVIAIEKDMAQSGVHHTAASVSALMSVLGSEGIVDAMLQNLRACQ 485

Query: 200 DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLT 258
           +T     +L  + K   +  T+ N A N  +   K +E +++    +   R   +   + 
Sbjct: 486 ET-----DLTTRKKLLDT--TAYNTAMNAFVQSKKFDEAWDI----FTEMRSLDVRPDIY 534

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
            Y++  +AC+  + V     L+++++K + +PD+      I+   H G++D+G +V  + 
Sbjct: 535 TYNILINACSHKQSVSTALELMDIMRKAKIAPDLITYNSLIKVMCHCGELDSGLRVLGEM 594

Query: 319 ICSEKFPPAELYATLVEGAMFGYTPKGM 346
             +   P    + TL+  A + +  KG+
Sbjct: 595 QDAGVQPDVTTFNTLLASASY-HKRKGL 621



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 50/114 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + + YNT + +    ++F    D++ +M    V+P    ++ LI        +       
Sbjct: 497 DTTAYNTAMNAFVQSKKFDEAWDIFTEMRSLDVRPDIYTYNILINACSHKQSVSTALELM 556

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D M+     PD+  YN LI V   C   D  +R+  EM+   V+P+  T+  LL
Sbjct: 557 DIMRKAKIAPDLITYNSLIKVMCHCGELDSGLRVLGEMQDAGVQPDVTTFNTLL 610



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 76  RDLFHSLI--VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           +D F++LI   G     +L ++ F   +M+  G    +  +N L+    + +    A+R+
Sbjct: 268 QDAFNALINAAGQAGQHKLAESLF--SEMRNLGLRLSIYTFNALLRAVVEGRGVSHALRV 325

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
              M+   V+P+  T+  LL+  + +G+LD   A++  M
Sbjct: 326 VRSMEAVGVRPDTHTFTTLLDGYSRSGKLDKAEALLAKM 364


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 2/165 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++P R  ++ ++ G     RL+    F + MK
Sbjct: 227 YDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMK 286

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PDV  YN +I+   + K  ++A + F EMK   + P   +Y  ++    +  + D
Sbjct: 287 SRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRAD 346

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII 206
               +  +M AAG   +   Y+ L+       K+P A    T+++
Sbjct: 347 DALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMV 391



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 34/207 (16%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDV---YDDMMLDGVQPT 75
            +RF+      E+   R  + +   YNT++       RF ++ +    + +M    + PT
Sbjct: 278 AKRFY------EDMKSRGISPDVVTYNTMINGYC---RFKMMEEAEQFFTEMKGKNIAPT 328

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
              + ++I G +  SR  D     ++MKA G  P+   Y+ L+      +   +A +I  
Sbjct: 329 VISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILT 388

Query: 136 EMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYA 185
           EM      P +   ++ LL+     G LD    +++ M      T A   G  ++  C A
Sbjct: 389 EMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKA 448

Query: 186 GLITAHTNKIPRADDTATKIIE-LVEQ 211
           G+            D A K++E LVE+
Sbjct: 449 GMY-----------DQAVKLLENLVEK 464


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 17/190 (8%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASE----------------YNTVVTSL-TSQRRFFLLR 61
           G+  +  SA    Y R  Y N A +                YN V+ +       F  + 
Sbjct: 222 GKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVV 281

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++D M+ +GVQP R  F+SL+    +G   +        M   G   D+  YN L+   
Sbjct: 282 EIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAV 341

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    D A  I  EM    + PN  TY  +++  A  G+LD    +  +M   G GLD+
Sbjct: 342 CKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDR 401

Query: 182 FCYAGLITAH 191
             Y  L++ +
Sbjct: 402 VSYNTLLSVY 411



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           GG +   F + S    E   +N   N   Y+T++       R     +++++M   GV  
Sbjct: 344 GGQMDLAFEIMS----EMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGL 399

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
            R  +++L+    K  R +       +M+  G   DV  YN L++  GK    D+  R+F
Sbjct: 400 DRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVF 459

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           EEMK+  V PN  TY  L++  +  G       + R+   AG   D   Y+ LI A
Sbjct: 460 EEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDA 515



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++++L    +  L + V+D  + +G   T   F +LI    +     +     D MK+
Sbjct: 194 SAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKS 253

Query: 105 NGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           NG +P++  YN +I  CGK      + + IF+ M    V+P+  T+  LL  C+  G  +
Sbjct: 254 NGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWE 313

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +   M   G   D F Y  L+ A
Sbjct: 314 AARRLFSAMVDKGIDQDIFTYNTLLDA 340



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++      RF    DV  +M   G++     +++L+ G  K  R  +     ++MK
Sbjct: 404 YNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMK 463

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P++  Y+ LI V  K     +A+ +F E K+  +K +   Y  L++A    G ++
Sbjct: 464 RGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVE 523

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++ +MT  G   +   Y  +I A
Sbjct: 524 SSVTLLDEMTKEGIRPNVVTYNSIIDA 550


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE A RN   N   Y  ++  L    R      +   M    V PT   ++SLI G  K 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKA 128

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  + +   ++M  +G +PD+  Y  LI+   K K SD A+R+FE++     +P+  TY
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRADDTATKIIEL 208
            CL++     G+L     +   M  +G+ + +   Y  LI+    ++ + D+ A  ++E 
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC-RMGKMDE-AMNLLER 246

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           + ++     V T              ++ Y+L        R G    ++T   +    C 
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ---MTRKGLTPDVVTFTSLMDGLCR 303

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK-VFEDYICSEKFPP 326
           E +   A+  L EM +K   SP VY     +  Y  +  ++   K + E+  C    PP
Sbjct: 304 ENRLSDAVHILGEMRRKS-CSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC----PP 357



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 10/260 (3%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI G  K  RL+    F  +M + GF PDV  Y  +I          +A +  EEM 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
              + PN  TY  L++     G++D   A++  M           Y  LI+    K  RA
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLC-KAERA 131

Query: 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYN--LPTAEYVHRRGGFLSRL 256
            +    + E+V     +S            + G  K +  +  L   E +  R GF   +
Sbjct: 132 SEAYDLLEEMV-----YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR-GFRPDV 185

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           +T   +    C E +  +A++    M+K     P+       I  +   G +D    + E
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 317 DYICSEKFPPAELYATLVEG 336
               +   P    Y TL+ G
Sbjct: 246 RMAETGSSPDVVTYTTLMNG 265



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L   +R          M+  G  P    + ++I      +RL +   F ++M 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                P+V  Y  LI   G CK    D+A+ +  +M+K  V P   TY  L++    A +
Sbjct: 74  NRNLTPNVVTYTVLID--GLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAER 130

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
               Y ++ +M  +G   D F Y  LIT    K  ++DD      +LV
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFC-KSKKSDDALRVFEQLV 177



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 15/140 (10%)

Query: 31  EYARRNYANNASEYNTVV------TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           E  R++ +     YNT++        L   R+F L     ++M      P    F+ +I 
Sbjct: 316 EMRRKSCSPTVYTYNTILDGYCRANQLEEARKFML-----EEM---DCPPNVVSFNIMIR 367

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVK 143
           G  K +R  +     ++ +     PDV +Y  +I    + K  D+A R++ +M ++    
Sbjct: 368 GLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCL 427

Query: 144 PNGQTYVCLLNACAAAGQLD 163
           PN  TY  L+     AG LD
Sbjct: 428 PNSITYSTLITGLCNAGMLD 447


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 7/251 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   YN +V    ++ +      + + M   GV P    ++ LI G      ++ 
Sbjct: 175 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 234

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            F     M+ +G + D   YN LI+   K   +DQA  +F+ ++   +KPN  T+  L+N
Sbjct: 235 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 294

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               +G+ D  +  +  M +AG   D + Y+  I  H  K+  + +  + I E++++   
Sbjct: 295 GLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI-EHLCKMKGSQEGLSFIGEMLQK--- 350

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDV 273
              V+ S  N    +  + KE  Y L    +        +  +  Y  +  A C E +  
Sbjct: 351 --DVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLN 408

Query: 274 QAMETLLEMLK 284
           +A   L+EM K
Sbjct: 409 EAENVLMEMSK 419



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 4/161 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRL 92
           R    NA  +N+++  L    +  +     + M+  G  P    + S I  +  MKGS  
Sbjct: 280 RGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGS-- 337

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           Q+   F  +M      P    Y  +I    K +N     R + EM      P+  TY   
Sbjct: 338 QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS 397

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           + A    G+L+    ++ +M+  G  +D   Y  L+  H +
Sbjct: 398 MRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS 438



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 4/160 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +A +   Y T++  L    R     +++ +M     QP   ++ +L+ G     R ++
Sbjct: 39  RGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM----DQPDMHMYAALVKGLCNAERGEE 94

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +MK  G+ P    Y  ++    + + + +A  + +EM +  + P   T   ++N
Sbjct: 95  GLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVIN 154

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           A    G++     ++  M   G   + + Y  L+    N+
Sbjct: 155 AYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNE 194



 Score = 41.6 bits (96), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 49/123 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +++   +   Y  V+  L  +R + L+   + +M+  G  P    + + +       
Sbjct: 346 EMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEG 405

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL +      +M  NG   D   YN L+        +D A+ I ++M      PN  TY 
Sbjct: 406 RLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYF 465

Query: 151 CLL 153
            LL
Sbjct: 466 ILL 468



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  G +P    F+SLIVG  + +++       D+M   GF  DV  Y  LI    +   
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A+ +F EM     +P+   Y  L+     A + +    ++R M   G       YA 
Sbjct: 61  IDEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 187 LI 188
           ++
Sbjct: 117 VV 118



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 28  GAEEYARRNYANNASEYNTVVTSLTSQRRFF-LLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           G     + ++A +  +  T V S+ +Q  +F LLR +    +++ V P          G 
Sbjct: 435 GHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTP------AGV 488

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   L D F   D MK N FLP+   Y+ ++    +   +++A  +   MK+  +  N 
Sbjct: 489 WKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE 548

Query: 147 QTYVCLLNA-CAAAGQLDPVYAIVRDMTAAG 176
             Y  L+   C +   LD  + +V  M   G
Sbjct: 549 DIYTALVTCFCKSKRYLD-AWVLVCSMIQHG 578


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 2/165 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++P R  ++ ++ G     RL+    F + MK
Sbjct: 227 YDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMK 286

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PDV  YN +I+   + K  ++A + F EMK   + P   +Y  ++    +  + D
Sbjct: 287 SRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRAD 346

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII 206
               +  +M AAG   +   Y+ L+       K+P A    T+++
Sbjct: 347 DALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMV 391



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 34/207 (16%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDV---YDDMMLDGVQPT 75
            +RF+      E+   R  + +   YNT++       RF ++ +    + +M    + PT
Sbjct: 278 AKRFY------EDMKSRGISPDVVTYNTMINGYC---RFKMMEEAEQFFTEMKGKNIAPT 328

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
              + ++I G +  SR  D     ++MKA G  P+   Y+ L+      +   +A +I  
Sbjct: 329 VISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILT 388

Query: 136 EMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYA 185
           EM      P +   ++ LL+     G LD    +++ M      T A   G  ++  C A
Sbjct: 389 EMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKA 448

Query: 186 GLITAHTNKIPRADDTATKIIE-LVEQ 211
           G+            D A K++E LVE+
Sbjct: 449 GMY-----------DQAVKLLENLVEK 464


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  A N   YNT++  L  +RR      +   M  DG+ P    +++LI G    
Sbjct: 280 DEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSI 339

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L       +QMK++G  P +A YN LI+   + KNS     +  EM+   + P+  TY
Sbjct: 340 GNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTY 399

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++A   +  ++  + I   M  AG   D + Y  LI
Sbjct: 400 TILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 438



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 13/194 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++    +  +     +++D+M   GV      +++LI G  +  R+ +     
Sbjct: 255 NVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLM 314

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK +G  P++  YN LI       N D+A  +F +MK     P+  TY  L+   + A
Sbjct: 315 CRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEA 374

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-KGWSSV 218
                V  +VR+M A G    K  Y  L+ A    + R+D+        +E++ + +SS+
Sbjct: 375 KNSAGVTDMVREMEARGLSPSKVTYTILMDA----LVRSDN--------IEKAFQIYSSM 422

Query: 219 ETSGNNAENEMMGV 232
           E +G  A+  + GV
Sbjct: 423 EKAGLVADIYIYGV 436



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y+ M L G+ P    ++S+I       +L + F   D+M+  G   +V  YN LI   
Sbjct: 242 ELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGL 301

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            + +   +A R+   MK+  + PN  +Y  L++   + G LD   ++   M ++G
Sbjct: 302 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 356



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 137/357 (38%), Gaps = 48/357 (13%)

Query: 74  PTRDLFHSLIVGTMKGSRL-QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           PT  L H  I+     S+L +   F+ +QM   G +P    +N L+ +  K    ++A R
Sbjct: 79  PTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR 138

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TA 190
           +F E K   VK +  ++  ++  C   G LD  + ++  M   G   +   Y  LI    
Sbjct: 139 VFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCC 197

Query: 191 HTNKIPRADDTATKIIEL-VEQSKGWSSVETSGNNAENEMMGVSKE--ELYN-------L 240
               I R      K+ EL V  ++   +V  +G       MG+ K+  ELY        +
Sbjct: 198 KNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFK----MGLKKDGIELYEKMKLTGIV 253

Query: 241 PTAEYVH-----------------------RRGGFLSRLLTVYHVAFHACAELKDVQAME 277
           P   Y +                       R  G    ++T   +    C E + ++A E
Sbjct: 254 PNV-YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEA-E 311

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
            L+  +K+D  SP++      I  Y   G++D    +F     S + P    Y  L+ G 
Sbjct: 312 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGF 371

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394
                  G+    D +  M +R   LSP   +  +L+ A  +S     A  I+  M+
Sbjct: 372 SEAKNSAGV---TDMVREMEARG--LSPSKVTYTILMDALVRSDNIEKAFQIYSSME 423


>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
 gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +   +  + R+ + +  ++ M+ +G+ PTR  ++ LI G     RL+    F 
Sbjct: 218 SVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLRTAVRFY 277

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + MK  G  PDV  YN +I+   + K  ++A ++F EMK  ++ P   +Y  ++    A 
Sbjct: 278 EDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKGYFAV 337

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            +++    ++ +M + G   +   Y  L+
Sbjct: 338 DRINDGLRLLEEMKSVGIKPNNVTYTTLL 366



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R  + +   YNT++      +R      ++ +M    + PT   + ++I G    
Sbjct: 278 EDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKGYFAV 337

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP-NGQT 148
            R+ D     ++MK+ G  P+   Y  L+          +A  I +EM +  + P +   
Sbjct: 338 DRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAPKDNSI 397

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAA---------GAGLDKFCYA 185
           ++ LLN+   AG L     ++  M            G  ++ FC A
Sbjct: 398 FLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIENFCKA 443



 Score = 38.5 bits (88), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V +DM   G +   D+F  LI    K   +Q++     +MK  G    V  YN L  V  
Sbjct: 171 VLEDMPKKGFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKELGVERSVKSYNALFKVIV 230

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +      A R F +M    + P   TY  L+     + +L        DM   G   D  
Sbjct: 231 RKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLRTAVRFYEDMKVRGISPDVV 290

Query: 183 CYAGLITAH--------TNKI---PRADDTATKIIELVEQSKGWSSVE--TSGNNAENEM 229
            Y  +I  +          K+    +A D A  +I      KG+ +V+    G     EM
Sbjct: 291 TYNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKGYFAVDRINDGLRLLEEM 350

Query: 230 MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
             V                  G     +T   +    C   K  +A + L EM+++    
Sbjct: 351 KSV------------------GIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAP 392

Query: 290 PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            D  I ++ +     +GD+     V +  I       A  Y  L+E
Sbjct: 393 KDNSIFLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIE 438


>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa]
 gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ SL       L   VY+D   DG+      +  LI G  K  R+++      +M+
Sbjct: 233 YNRIMDSLIKTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMR 292

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            N   PDV  Y  ++       N D  +R++EEMK+  V+P+   YV L+ A    G++D
Sbjct: 293 ENLCKPDVFAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVD 352

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
             Y + ++M      +D+  Y  L+ A
Sbjct: 353 KGYEVFKEMKGRRILIDRGIYGILVEA 379



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 18  LGRRFFVTSAGAEEYARRNYAN-NASEYNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPT 75
           L  +FF   AG ++  +  +A+ NA  YN       ++  FF   D   ++M   G  PT
Sbjct: 142 LATKFF-HWAGKQKGFKHTFASYNAFAYNL------NRSNFFRAADQLPELMEAQGKPPT 194

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
              F  LI      +R    ++   +M   G  P V +YN ++    K  + D A+ ++E
Sbjct: 195 EKQFEILIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYE 254

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + ++  +     TY+ L+     AG+++ +  ++  M       D F Y  ++ A
Sbjct: 255 DFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDVFAYTAMVRA 309


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 161/378 (42%), Gaps = 16/378 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+V +LT Q+RF  +  +   +  +G++P   L +++I    +  ++ +      +MK
Sbjct: 60  YTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMK 119

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
             G  P  + YN LI   G      +++++ E M + E VKPN +TY  L+ A     +L
Sbjct: 120 EYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKL 179

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +  + ++  M A+G   D   Y  +  A+      A +  T+  E +     ++ V+ + 
Sbjct: 180 EEAWNVLHKMVASGIQPDVVTYNTMARAY------AQNGETERAERLILKMPYNIVKPNE 233

Query: 223 NNAENEMMGVSKEELYNLPTA-EYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAMETLL 280
                 + G  KE   N+P A  +++R     +     V++       +  D   ++  L
Sbjct: 234 RTCGIIISGYCKEG--NMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEAL 291

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            ++++    PDV      +  +  +G ++N  ++F D + +   P    Y+ L +G +  
Sbjct: 292 TLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRA 351

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
             P+    A+  L +M+   +   P +     +++    +G    A  + + M     +P
Sbjct: 352 GQPRK---AEALLTSMSKYGV--QPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSP 406

Query: 401 SLPAVEAYYNGLKDREVP 418
           +L   E    G  + + P
Sbjct: 407 NLKTYETLIWGYGEAKQP 424


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE A RN   N   Y  ++  L    R      +   M    V PT   ++SLI G  K 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKA 128

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  + +   ++M  +G +PD+  Y  LI+   K K SD A+R+FE++     +P+  TY
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRADDTATKIIEL 208
            CL++     G+L     +   M  +G+ + +   Y  LI+    ++ + D+ A  ++E 
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC-RMGKMDE-AMNLLER 246

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           + ++     V T              ++ Y+L        R G    ++T   +    C 
Sbjct: 247 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ---MTRKGLTPDVVTFTSLMDGLCR 303

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK-VFEDYICSEKFPP 326
           E +   A+  L EM +K   SP VY     +  Y  +  ++   K + E+  C    PP
Sbjct: 304 ENRLSDAVHILGEMRRKS-CSPTVYTYNTILDGYCRANQLEEARKFMLEEMDC----PP 357



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI G  K  RL+    F  +M + GF PDV  Y  +I          +A +  EEM 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
              + PN  TY  L++     G++D   A++  M
Sbjct: 74  NRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L   +R          M+  G  P    + ++I      +RL +   F ++M 
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMA 73

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                P+V  Y  LI   G CK    D+A+ +  +M+K  V P   TY  L++    A +
Sbjct: 74  NRNLTPNVVTYTVLID--GLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAER 130

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
               Y ++ +M  +G   D F Y  LIT    K  ++DD A ++ E
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFC-KSKKSDD-ALRVFE 174


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  A N   YNT++  L  +RR      +   M  DG+ P    +++LI G    
Sbjct: 293 DEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSI 352

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L       +QMK++G  P +A YN LI+   + KNS     +  EM+   + P+  TY
Sbjct: 353 GNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTY 412

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++A   +  ++  + I   M  AG   D + Y  LI
Sbjct: 413 TILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI 451



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 13/194 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++    +  +     +++D+M   GV      +++LI G  +  R+ +     
Sbjct: 268 NVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLM 327

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK +G  P++  YN LI       N D+A  +F +MK     P+  TY  L+   + A
Sbjct: 328 CRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEA 387

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-KGWSSV 218
                V  +VR+M A G    K  Y  L+ A    + R+D+        +E++ + +SS+
Sbjct: 388 KNSAGVTDMVREMEARGLSPSKVTYTILMDA----LVRSDN--------IEKAFQIYSSM 435

Query: 219 ETSGNNAENEMMGV 232
           E +G  A+  + GV
Sbjct: 436 EKAGLVADIYIYGV 449



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 56/115 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y+ M L G+ P    ++S+I       +L + F   D+M+  G   +V  YN LI   
Sbjct: 255 ELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGL 314

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            + +   +A R+   MK+  + PN  +Y  L++   + G LD   ++   M ++G
Sbjct: 315 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 369



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 137/357 (38%), Gaps = 48/357 (13%)

Query: 74  PTRDLFHSLIVGTMKGSRL-QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           PT  L H  I+     S+L +   F+ +QM   G +P    +N L+ +  K    ++A R
Sbjct: 92  PTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR 151

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TA 190
           +F E K   VK +  ++  ++  C   G LD  + ++  M   G   +   Y  LI    
Sbjct: 152 VFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCC 210

Query: 191 HTNKIPRADDTATKIIEL-VEQSKGWSSVETSGNNAENEMMGVSKE--ELYN-------L 240
               I R      K+ EL V  ++   +V  +G       MG+ K+  ELY        +
Sbjct: 211 KNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFK----MGLKKDGIELYEKMKLTGIV 266

Query: 241 PTAEYVH-----------------------RRGGFLSRLLTVYHVAFHACAELKDVQAME 277
           P   Y +                       R  G    ++T   +    C E + ++A E
Sbjct: 267 PNV-YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEA-E 324

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
            L+  +K+D  SP++      I  Y   G++D    +F     S + P    Y  L+ G 
Sbjct: 325 RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGF 384

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394
                  G+    D +  M +R   LSP   +  +L+ A  +S     A  I+  M+
Sbjct: 385 SEAKNSAGV---TDMVREMEARG--LSPSKVTYTILMDALVRSDNIEKAFQIYSSME 436


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  +       +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 204 YSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQML 263

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN L+   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 264 SQXLLPDJITYNTLVY--GLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGD 321

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 322 LDAAFEHRKRMIQENIRLDDVAYTALISG 350



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   GVQP    +  LI G  K S + D     D+M   G +P+   +  LI   G CKN
Sbjct: 192 MRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLID--GHCKN 249

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L+  + ++ +M   G   DKF Y
Sbjct: 250 GRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTY 309

Query: 185 AGLI 188
             LI
Sbjct: 310 TTLI 313



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 22/282 (7%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D +   G++P+   +++L+ G ++   L + F  +  M+A+G  PDV  Y+ LI+  G
Sbjct: 153 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLIN--G 210

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK S  D A  +F+EM    + PN  T+  L++     G++D    I + M +     D
Sbjct: 211 LCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPD 270

Query: 181 KFCYAGLITAHTNKIPRAD-DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYN 239
              Y  L+     K    D + A  +I+ +   KG    + +     +   G  KE   +
Sbjct: 271 JITYNTLVYGLCKK---GDLNQAHGLIDEM-XXKGLKPDKFTYTTLID---GCCKEGDLD 323

Query: 240 LPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYI 294
              A + HR+   +   + +  VA+ A     C E +   A + L EML    K PD   
Sbjct: 324 ---AAFEHRK-RMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLK-PDTGT 378

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               I  +   GD+  G K+ ++   +   P    Y  L+ G
Sbjct: 379 YTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 63/165 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   + P    +++L+ G  K 
Sbjct: 225 DEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKK 284

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L       D+M   G  PD   Y  LI  C K  + D A    + M +  ++ +   Y
Sbjct: 285 GDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAY 344

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M + G   D   Y  +I     K
Sbjct: 345 TALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 389



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V  L  +        + D+M   G++P +  + +LI G  K   L   F  R +M 
Sbjct: 274 YNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMI 333

Query: 104 ANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                 D   Y  LIS  G C+   S  A ++  EM    +KP+  TY  ++N     G 
Sbjct: 334 QENIRLDDVAYTALIS--GLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGD 391

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 392 VWKGSKLLKEMQRNG 406



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 59/145 (40%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V+  L   R F L+   Y++++  G   +   F+ L+    K   ++      D +   G
Sbjct: 102 VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWG 161

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             P V  YN L++   +  + D+  R+   M+   V+P+  TY  L+N       +D   
Sbjct: 162 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDAN 221

Query: 167 AIVRDMTAAGAGLDKFCYAGLITAH 191
            +  +M   G   +   +  LI  H
Sbjct: 222 ELFDEMLVKGLVPNXVTFTTLIDGH 246


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+QP    +++LI    + S L++     + M A+   PD+  YN +ISV G+C  S +A
Sbjct: 289 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREA 348

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            R+F++++     P+  TY  LL A A  G +D V  I  DM   G G D+  Y  +I
Sbjct: 349 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTII 406



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           +A  Y  ++ SL          +V  +M+   V+PT   F +LI G  K G R++    F
Sbjct: 433 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETF 492

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D M  +G  PD   Y+ ++ +  +   S +A+++++EM  +  KP+   Y  +L     
Sbjct: 493 -DCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGK 551

Query: 159 AGQLDPVYAIVRDM 172
             + + V+ +V+DM
Sbjct: 552 ENREEDVHKVVKDM 565



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 67/160 (41%)

Query: 17   ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
            A G+R     A   E     +  + S +N+V+   T    F     VY  +   G++P  
Sbjct: 898  AKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDE 957

Query: 77   DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
            D +++LI+   +  R ++      +M+  G  P +  Y  LIS  GK +  +QA  +FE 
Sbjct: 958  DTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEG 1017

Query: 137  MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            +   E K +   Y  ++     +G       ++  M  AG
Sbjct: 1018 LLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAG 1057



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 122/299 (40%), Gaps = 7/299 (2%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  + + Y +++        F     ++ DM   GV+P+  L+ S++V   K    +   
Sbjct: 672 FCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAH 731

Query: 97  FFRDQMKANGFL-PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +  DQ +  G L  DV+++  +I   GK K   +A  +   +++     + + +  L++A
Sbjct: 732 YLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHA 791

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
            AA+G  +   AI   M   G         GL+ A      R D+    I EL  Q  G+
Sbjct: 792 YAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVD-GRLDELYVVIQEL--QDMGF 848

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
              ++S     +         ++ +       +  G+    + +Y +     A+ K V+ 
Sbjct: 849 KISKSSITLMLDAFAHAGN--IFEVKKIYQGMKAAGYFPT-MHLYRIMIGLLAKGKRVRD 905

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           +E ++  ++  R  PD+ I    ++ Y   GD     +V++    +   P  + Y TL+
Sbjct: 906 VEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI 964


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 123/332 (37%), Gaps = 42/332 (12%)

Query: 6   SIYRHHKSVGGALGRRFFVTSAG-AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVY 64
           S Y ++  + G   +  FV +    EE   R      S YNT++  L    +   +R  +
Sbjct: 284 SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRF 343

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
            DM+     P    F+SL+ G  +   + + F   D++K    +P V  YN LI      
Sbjct: 344 SDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMW 403

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+R+ +EM    + P+  TY  L+N C   G +        +M + G   D+F Y
Sbjct: 404 GYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY 463

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
              I                 +++ + S  +S  E        EM+              
Sbjct: 464 NTRIVGE--------------MKIADTSVAFSMQE--------EMLA------------- 488

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                 GF   ++T Y+V  HA  +  + +    LLE +  D   PD       I  ++ 
Sbjct: 489 -----AGFPPDVIT-YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVK 542

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +G +    +VF + +     P    Y  L+  
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHA 574



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  +++M+  G++P R  +++ IVG MK +     F  +++M A GF PDV  YN  +  
Sbjct: 445 RGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHA 504

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             +  N ++A  + E M    + P+  TY  ++N     G L     +  +M + G    
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 181 KFCYAGLITAHTNK 194
              Y  LI AH  K
Sbjct: 565 VVTYTVLIHAHAAK 578



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 129/339 (38%), Gaps = 48/339 (14%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D M+ +G+ P     + ++      + L         M+  G  P V  YN ++    
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    DQA+ +  EM++    PN  TY  L+N  +  G+L+    ++ +M  +G  +  +
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            Y  LI     K         +  +LVE                                
Sbjct: 287 TYNPLINGFCQK-----GLFVEAFDLVE-------------------------------- 309

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            E V+RR       L+ Y+   +   +   V  +      + K + +PD+      +  Y
Sbjct: 310 -EMVNRRA---FPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGY 365

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNI 361
             +G I     +F++  C +  P    Y TL+ G  M+GY    ++L ++    M  + +
Sbjct: 366 CRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKE----MTDQGL 421

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
           F  P + +  +LV    K G  + A   ++ M ++ + P
Sbjct: 422 F--PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKP 458



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 70/170 (41%)

Query: 24  VTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
           V  +  EE     +  +   YN  V +L  Q  F    D+ ++M+ DG+ P    + S+I
Sbjct: 478 VAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSII 537

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
            G +K   L+      ++M + G  P V  Y  LI      +  D A   F +M +  V 
Sbjct: 538 NGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVP 597

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            N  TY  ++N      ++D  Y    +M   G   +KF Y  LI    N
Sbjct: 598 ANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 1/170 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++            R+V+++M+  GV P+   +  LI        L   F +  +M 
Sbjct: 533 YTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKML 592

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 +V  YN +I+     +  D+A + F+EM++  + PN  +Y  L+N     G  +
Sbjct: 593 EKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWE 652

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNKIPRADDTATKIIELVEQS 212
               + R+M       D F ++  +   H +    A      +I+ VE +
Sbjct: 653 EALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 50/113 (44%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++VY  M   G++PT   +++++    K  R+        +M+  G  P+   YN L++ 
Sbjct: 200 KNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNG 259

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
             K    +QA  + EEM    +  +  TY  L+N     G     + +V +M 
Sbjct: 260 LSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMV 312


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N   Y++++  L   +R  L+  V   M+ +   P   ++  +I G  K ++  + +
Sbjct: 711 YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAY 770

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M+  G  P+V  Y  +I   GK    D+ + +F EM      PN  TY  L+N C
Sbjct: 771 KLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHC 830

Query: 157 AAAGQLDPVYAIVRDM 172
            A G LD  YA++ +M
Sbjct: 831 CATGHLDEAYALLEEM 846



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 41/247 (16%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTF 96
           N   Y  +V  L    +    RD+ + M +DG +P   ++ +LI G  K ++L   Q+ F
Sbjct: 644 NVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVF 703

Query: 97  ---------------------FFRDQ-----------MKANGFLPDVAVYNYLISVCGKC 124
                                 F+D+           M  N   P++ +Y  +I    K 
Sbjct: 704 HKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKV 763

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
             +D+A ++   M++   KPN  TY  +++    AG++D    + R+M + G   +   Y
Sbjct: 764 AKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
             LI  H       D+ A  ++E ++Q+     V +     E    G  +E + +L   E
Sbjct: 824 TVLIN-HCCATGHLDE-AYALLEEMKQTYWPKHVSSYCKVIE----GYKREFILSLGLLE 877

Query: 245 YVHRRGG 251
            V + G 
Sbjct: 878 EVEKNGS 884



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 55/129 (42%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +MM +G  P    +  +I      SR+++ FF   +MK  G +PDV  Y  LI    
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K     QA    +EM +   +P   TY  L++A   A ++     +   M A G   +  
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 183 CYAGLITAH 191
            Y  LI  +
Sbjct: 596 TYTALIDGY 604



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/406 (20%), Positives = 143/406 (35%), Gaps = 48/406 (11%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           + ++  N   YN +++ L     F    D  + M      P    +  L+ G +   +L 
Sbjct: 301 KEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLG 360

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                   M A G  P   ++N L+    K  +   A ++ ++M+K E KP    Y  L+
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420

Query: 154 NACAAAGQL-DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            +  + G+L  PV         A    ++   AG +    N           ++      
Sbjct: 421 GSICSGGELPGPV-----TFELAEKAYNEMLSAGTVLNKVN-----------VVSFARCL 464

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
            G+   E +     +EMMG                   GF+    T   V    C   + 
Sbjct: 465 CGFGKFEKA-YKVIHEMMG------------------NGFVPDTSTYSEVIGFLCNASR- 504

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           V+    L + +K     PDVY     I C+  +G I   H   ++ +     P    Y T
Sbjct: 505 VENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564

Query: 333 LVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
           L+   +     K + +A +    M ++  F  P + +   L+    KSG    A  I+  
Sbjct: 565 LIHAYL---KAKKVSVANELFELMIAKGCF--PNVITYTALIDGYCKSGNIEKACQIYAR 619

Query: 393 MQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLRGR 438
           M+       +P V+ Y+   K +   A+ P +V      D L +  
Sbjct: 620 MRG---DADIPDVDMYF---KIKNNVAEKPNVVTYGALVDGLCKAH 659



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    + +L+ G  K  +++D     + M  +G  P+  VY+ LI    K    D+A  
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +F +M ++   PN  TY  L++      +LD V  ++  M       +   Y  +I    
Sbjct: 702 VFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDG-L 760

Query: 193 NKIPRADDTATKIIELVEQ 211
           +K+ + D+ A K++ ++E+
Sbjct: 761 SKVAKTDE-AYKLMLMMEE 778



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D+M+ DG +PT   + +LI   +K  ++       + M A G  P+V  Y  LI    K 
Sbjct: 548 DEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKS 607

Query: 125 KNSDQAIRIFEEMK--------------KYEV--KPNGQTYVCLLNACAAAGQLDPVYAI 168
            N ++A +I+  M+              K  V  KPN  TY  L++    A ++     +
Sbjct: 608 GNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDL 667

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
           +  M   G   +   Y  LI       K+  A +   K++E
Sbjct: 668 LETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVE 708


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ +++   G+QP    +++LI    + S L++     + M A+   PD+  YN +ISV 
Sbjct: 312 ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 371

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+C  S +A R+F++++     P+  TY  LL A A  G +D V  I  DM   G G D+
Sbjct: 372 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 431

Query: 182 FCYAGLI 188
             Y  +I
Sbjct: 432 MTYNTII 438



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 6/136 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQ--DTF 96
           +A  Y  ++ SL          +V  +M+   V+PT   F +LI G  K G R++  +TF
Sbjct: 465 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETF 524

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D M  +G  PD   Y+ ++ +  +   S +A+++++EM  +  KP+   Y  +L   
Sbjct: 525 ---DCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVL 581

Query: 157 AAAGQLDPVYAIVRDM 172
               + + V+ +V+DM
Sbjct: 582 GKENREEDVHKVVKDM 597



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 67/160 (41%)

Query: 17   ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
            A G+R     A   E     +  + S +N+V+   T    F     VY  +   G++P  
Sbjct: 930  AKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDE 989

Query: 77   DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
            D +++LI+   +  R ++      +M+  G  P +  Y  LIS  GK +  +QA  +FE 
Sbjct: 990  DTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEG 1049

Query: 137  MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            +   E K +   Y  ++     +G       ++  M  AG
Sbjct: 1050 LLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAG 1089



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 121/299 (40%), Gaps = 7/299 (2%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  + + Y +++        F     ++ DM   GV+P+  L+ S++V   K    +   
Sbjct: 704 FCGSFTMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAH 763

Query: 97  FFRDQMKANGFL-PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +  DQ +  G L  DV+++  +I   GK K   +A  +   +++     + + +  L++A
Sbjct: 764 YLIDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHA 823

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
            AA+G  +   AI   M   G         GL+ A      R D+    I EL  Q  G+
Sbjct: 824 YAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVD-GRLDELYVVIQEL--QDMGF 880

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
              ++S     +         ++ +       +  G+    + +Y +     A+ K V+ 
Sbjct: 881 KISKSSITLMLDAFAHAGN--IFEVKKIYQGMKAAGYFPT-MHLYRIMIGLLAKGKRVRD 937

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           +E ++  ++     PD+ I    ++ Y   GD     +V++    +   P  + Y TL+
Sbjct: 938 VEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI 996


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ +++   G+QP    +++LI    + S L++     + M A+   PD+  YN +ISV 
Sbjct: 255 ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVY 314

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+C  S +A R+F++++     P+  TY  LL A A  G +D V  I  DM   G G D+
Sbjct: 315 GRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDE 374

Query: 182 FCYAGLI 188
             Y  +I
Sbjct: 375 MTYNTII 381



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 6/136 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQ--DTF 96
           +A  Y  ++ SL          +V  +M+   V+PT   F +LI G  K G R++  +TF
Sbjct: 408 DAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETF 467

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D M  +G  PD   Y+ ++ +  +   S +A+++++EM  +  KP+   Y  +L   
Sbjct: 468 ---DCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVL 524

Query: 157 AAAGQLDPVYAIVRDM 172
               + + V+ +V+DM
Sbjct: 525 GKENREEDVHKVVKDM 540


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 17  ALGRRFFVTSAGAEEYARRNYA--NNASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQ 73
           A GR  +   A    Y+ ++Y    N   YN V+ +       F  + +++D+M+ +G+Q
Sbjct: 121 AYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQ 180

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P R  F+SL+    KG   +       +M   G   D+  YN L+    K    D A  I
Sbjct: 181 PDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEI 240

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             EM    + PN  TY  +++  A AG+LD    +  +M   G  LD+  Y  L++ +  
Sbjct: 241 MSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYA- 299

Query: 194 KIPRADD 200
           K+ R ++
Sbjct: 300 KLGRFEE 306



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           GG L   F + S    E   +N   N   Y+T++       R    R+++++M   G+  
Sbjct: 231 GGQLDMAFEIMS----EMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISL 286

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
            R  +++L+    K  R ++      +M+ +G   DV  YN L+   GK    D   ++F
Sbjct: 287 DRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVF 346

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           EEMK   V PN  TY  L++  +  G       + R+   AG   D   Y+ LI A
Sbjct: 347 EEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDA 402



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     Q ++ ++R V+++M    V P    + +LI    KG   ++      + K
Sbjct: 326 YNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFK 385

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
             G   DV +Y+ LI     CKN   + A+ + +EM K  ++PN  TY  +++A
Sbjct: 386 KAGLKADVVLYSALIDAL--CKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 437



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 1/147 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++++L    +  + + V+   + +G   T   F ++I    +     +       MK 
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140

Query: 105 NGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            G  P++  YN +I  CGK      + + IF+EM +  ++P+  T+  LL  C+  G  +
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE 200

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              ++  +M   G   D F Y  L+ A
Sbjct: 201 AARSLSCEMVNRGIDQDIFTYNTLLDA 227



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++      RF    DV  +M   G++     +++L+ G  K  +        ++MK
Sbjct: 291 YNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMK 350

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A    P++  Y+ LI V  K     +A+ +F E KK  +K +   Y  L++A    G ++
Sbjct: 351 ARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVE 410

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +++ +MT  G   +   Y  +I A
Sbjct: 411 SAVSLLDEMTKEGIRPNVVTYNSIIDA 437


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 123/332 (37%), Gaps = 42/332 (12%)

Query: 6   SIYRHHKSVGGALGRRFFVTSAG-AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVY 64
           S Y ++  + G   +  FV +    EE   R      S YNT++  L    +   +R  +
Sbjct: 284 SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRF 343

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
            DM+     P    F+SL+ G  +   + + F   D++K    +P V  YN LI      
Sbjct: 344 SDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMW 403

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+R+ +EM    + P+  TY  L+N C   G +        +M + G   D+F Y
Sbjct: 404 GYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY 463

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
              I                 +++ + S  +S  E        EM+              
Sbjct: 464 NTRIVGE--------------MKIADTSVAFSMQE--------EMLA------------- 488

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                 GF   ++T Y+V  HA  +  + +    LLE +  D   PD       I  ++ 
Sbjct: 489 -----AGFPPDVIT-YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVK 542

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +G +    +VF + +     P    Y  L+  
Sbjct: 543 NGHLRKAREVFNEMLSKGVAPSVVTYTVLIHA 574



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  +++M+  G++P R  +++ IVG MK +     F  +++M A GF PDV  YN  +  
Sbjct: 445 RGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHA 504

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             +  N ++A  + E M    + P+  TY  ++N     G L     +  +M + G    
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPS 564

Query: 181 KFCYAGLITAHTNK 194
              Y  LI AH  K
Sbjct: 565 VVTYTVLIHAHAAK 578



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 129/339 (38%), Gaps = 48/339 (14%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D M+ +G+ P     + ++      + L         M+  G  P V  YN ++    
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    DQA+ +  EM++    PN  TY  L+N  +  G+L+    ++ +M  +G  +  +
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            Y  LI     K         +  +LVE                                
Sbjct: 287 TYNPLINGFCQK-----GLFVEAFDLVE-------------------------------- 309

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            E V+RR       L+ Y+   +   +   V  +      + K + +PD+      +  Y
Sbjct: 310 -EMVNRRA---FPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGY 365

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNI 361
             +G I     +F++  C +  P    Y TL+ G  M+GY    ++L ++    M  + +
Sbjct: 366 CRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKE----MTDQGL 421

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
           F  P + +  +LV    K G  + A   ++ M ++ + P
Sbjct: 422 F--PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKP 458



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 70/170 (41%)

Query: 24  VTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
           V  +  EE     +  +   YN  V +L  Q  F    D+ ++M+ DG+ P    + S+I
Sbjct: 478 VAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSII 537

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
            G +K   L+      ++M + G  P V  Y  LI      +  D A   F +M +  V 
Sbjct: 538 NGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVP 597

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            N  TY  ++N      ++D  Y    +M   G   +KF Y  LI    N
Sbjct: 598 ANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 1/170 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++            R+V+++M+  GV P+   +  LI        L   F +  +M 
Sbjct: 533 YTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKML 592

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 +V  YN +I+     +  D+A + F+EM++  + PN  +Y  L+N     G  +
Sbjct: 593 EKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWE 652

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNKIPRADDTATKIIELVEQS 212
               + R+M       D F ++  +   H +    A      +I+ VE +
Sbjct: 653 EALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDN 702



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 50/113 (44%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++VY  M   G++PT   +++++    K  R+        +M+  G  P+   YN L++ 
Sbjct: 200 KNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNG 259

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
             K    +QA  + EEM    +  +  TY  L+N     G     + +V +M 
Sbjct: 260 LSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMV 312


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YNT+V +            +   M   GV+P+   F++++ G  K  R++D   
Sbjct: 187 APNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARK 246

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
             D+M   G  PD   YN L+S  G CK     +A+ +F EM +  V P+  T+  L++A
Sbjct: 247 MFDEMAREGLTPDGVSYNTLVS--GYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHA 304

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              AG L+   A+V  M   G  +++F +  LI
Sbjct: 305 MCRAGNLERAVALVGQMRERGLRMNEFTFTALI 337



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 12/296 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NTVV  L    R    R ++D+M  +G+ P    +++L+ G  K   L +      +M 
Sbjct: 228 FNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMA 287

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PDV  +  LI    +  N ++A+ +  +M++  ++ N  T+  L++     G LD
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                +++M          CY  LI  +  K+ R D+    I E+  ++KG      + +
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLINGYC-KLGRMDEARELIHEM--EAKGMKPDVVTYS 404

Query: 224 NAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                + G  K  + +  +A  ++R   + G +   +T   +    C E +   A E   
Sbjct: 405 TI---LSGYCK--IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFE 459

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +ML+   + PD +     I  +   G++     + ++ I     P    Y+ L++G
Sbjct: 460 KMLQLGLQ-PDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDG 514



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++    +A  Y++++  L  +RR     ++++ M+  G+QP    + +LI G  K   +Q
Sbjct: 428 KKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQ 487

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 D+M   G LPDV  Y+ LI    K   + +A R+  ++   +  P+   Y  L+
Sbjct: 488 KALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALM 547

Query: 154 NACAAAGQLDPVYAIVRDMTAAG 176
           + C  A +   V A+++  +  G
Sbjct: 548 HCCRTA-EFKSVVALLKGFSMKG 569



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 13/307 (4%)

Query: 34  RRNYANNASEYNTVVTSLTSQ-RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           R   A N   YN +V +L ++ +R   L  V DDM   G  P    +++L+    +   +
Sbjct: 147 RDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEV 206

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                    M+  G  P +  +N +++   K    + A ++F+EM +  + P+G +Y  L
Sbjct: 207 DAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTL 266

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ- 211
           ++    AG L    A+  +M   G   D   +  LI A    + RA +   + + LV Q 
Sbjct: 267 VSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHA----MCRAGNL-ERAVALVGQM 321

Query: 212 -SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
             +G    E +     +   G  +    +         R   +   +  Y+V  +   +L
Sbjct: 322 RERGLRMNEFTFTALID---GFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKL 378

Query: 271 KDV-QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
             + +A E + EM  K  K PDV      +  Y   GD D+  ++    +     P A  
Sbjct: 379 GRMDEARELIHEMEAKGMK-PDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAIT 437

Query: 330 YATLVEG 336
           Y++L+ G
Sbjct: 438 YSSLIRG 444


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   A     YNT+V++            V + M   G +P    ++ L VG  +  ++ 
Sbjct: 271 RDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVD 330

Query: 94  DTFFFRDQM-KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           + F  +D+M + +  LPDV  YN L+  C K + S  A+R+ EEM+   VKP   T+  +
Sbjct: 331 EAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIV 390

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           + +    G+L+     +  +   G   D   Y  LI A+
Sbjct: 391 VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   R    + S YNT++  L    R     D  ++++  G+ P    ++ +I    K 
Sbjct: 513 DQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKE 572

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L++ F F ++M  N F PDV   N L++  G C +   D+A+++FE   +   K +  
Sbjct: 573 GDLENAFRFHNKMVENSFKPDVVTCNTLMN--GLCLHGKLDKALKLFESWVEKGKKVDVI 630

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           TY  L+ +    G +D       DM   G   D F Y  +++A
Sbjct: 631 TYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSA 673



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R +  +   Y TV+ +   +        ++D M+   + P+   +++LI G  +  RL+
Sbjct: 482 QRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLK 541

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     +++   G +PD   YN +I    K  + + A R   +M +   KP+  T   L+
Sbjct: 542 EAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLM 601

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           N     G+LD    +       G  +D   Y  LI
Sbjct: 602 NGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLI 636



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    +++L+    +   L +      +MK +G  P    YN L+S   +     QA
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQA 297

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLIT 189
            ++ E M  Y  +P+ +TY  L      AG++D  + +  +M      L D   Y  L+ 
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVD 357

Query: 190 A 190
           A
Sbjct: 358 A 358



 Score = 41.2 bits (95), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 47/115 (40%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DV+  ++   + P    F+ L+        L D       M+  G  PD   YN L++  
Sbjct: 194 DVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAH 253

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            +     +A  +   MK+  + P   TY  L++A A  G +     +V  MTA G
Sbjct: 254 CRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG 308



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 125/300 (41%), Gaps = 20/300 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM-KGSRLQDTFFFRDQM 102
           YNT+V +    R       + ++M   GV+PT  + H+++V ++ K  +L++     +++
Sbjct: 352 YNTLVDACFKWRCSSDALRLLEEMRDKGVKPTL-VTHNIVVKSLCKEGKLEEALGKLEKI 410

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              G  PDV  YN LI    K  N  +A  + +EM    +K +  T   +L       + 
Sbjct: 411 AEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRY 470

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +    ++      G   D+  Y  ++ A+  +     + A ++ + + + K   S+ T  
Sbjct: 471 EDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEY--NPEPALRLWDQMIERKLIPSISTYN 528

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL----TVYHVAFHACAELKDVQAMET 278
                 + G+ + E       E + +    + + L    T Y++  HA  +  D++    
Sbjct: 529 ----TLIKGLCRMERLK----EAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFR 580

Query: 279 LLEMLKKDRKSPDVYI--VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               + ++   PDV     + N  C LH G +D   K+FE ++   K      Y TL++ 
Sbjct: 581 FHNKMVENSFKPDVVTCNTLMNGLC-LH-GKLDKALKLFESWVEKGKKVDVITYNTLIQS 638



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 70/165 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ A    A +   YNT++ +            + D+M+  G++      ++++    K 
Sbjct: 408 EKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKM 467

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +D           GF+PD   Y  +++   K  N + A+R++++M + ++ P+  TY
Sbjct: 468 KRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTY 527

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+       +L      + ++   G   D+  Y  +I A+  +
Sbjct: 528 NTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKE 572



 Score = 38.1 bits (87), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 36/146 (24%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM- 137
           +++LI    K   +     F D M+  G  PD   YN ++S   +   S++A  +  ++ 
Sbjct: 632 YNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLA 691

Query: 138 ------------------------KKYEVKPNGQ-----------TYVCLLNACAAAGQL 162
                                   K++E KP  +           TY+  LN     GQL
Sbjct: 692 DSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQL 751

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLI 188
               A++ +M   G  +D   Y  L+
Sbjct: 752 KEAKAVLDEMMQKGMPVDSSTYITLM 777


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        +M 
Sbjct: 201 YSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRML 260

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 261 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 318

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 319 LDTAFEHRKRMIQENIRLDDVAYTALISG 347



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 117 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 176

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 177 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLIPNGV 234

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 235 TFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 294

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 295 -----SMKGLKPDKFTYTTLID---GCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYT 342

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML  D K PD       I  +   GD+  G K+ ++   
Sbjct: 343 ALISGLCQEGRSVDAEKMLREMLSVDLK-PDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 401

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 402 DGHAPSVVTYNVLMNG 417


>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 484

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G +PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGNEPTRHTFNIMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +   +PDV  YN +I    + K  ++A + F EMK   ++P   TY  L+    +  ++D
Sbjct: 178 SREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
               +V +M   G   +   Y+ L+    N   +  +  + + E+VE+
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTLLPGLCNA-QKMSEARSILKEMVEK 284



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R    +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   R+ D     ++MK  G  P+   Y+ L+      +   +A  I +EM +K
Sbjct: 225 TLIKGYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSILKEMVEK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L++    AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YITPTDNSIFLRLISGQCKAGDLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R + ++M+  G  P    ++SLI       ++ + F   ++M+  G  PDV  YN L+ +
Sbjct: 365 RQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDM 424

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            GK   + +A R+F++MK   V+P+  +Y   ++  A   +LD    + +DM A G  +D
Sbjct: 425 LGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVD 484

Query: 181 KFCYAGLITAHTNKIPRADDT 201
           K  Y  LI A      RA DT
Sbjct: 485 KAMYRILIRAAH----RAGDT 501



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++       +     +++ +M + G +P    +  L+    K  R+Q+   F D M 
Sbjct: 103 YNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAML 162

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P++  YN L+    K    D A+ +F EMK+   +P+  TY  LL+A  +AG++ 
Sbjct: 163 ERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVG 222

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
               +   MT  G   D + Y+ L+     K  R ++      E+V++
Sbjct: 223 AARKLFHKMTGDGCSPDSYTYSTLVNG-LGKSGRVEEAHKVFREMVDR 269



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR +  +   YN ++ +L S  R    R ++  M  DG  P    + +L+ G  K  
Sbjct: 195 EMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSG 254

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+++      +M   G   D+  YN L++   K  N D+  ++ +EM +    P+  ++ 
Sbjct: 255 RVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFN 314

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +++A   A + D    +   M  +G   D   Y  LI ++
Sbjct: 315 TIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY 355



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 2/175 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   YN ++ +     +  +   ++ +M   G QP+   ++ L+       R+  
Sbjct: 164 RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGA 223

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +M  +G  PD   Y+ L++  GK    ++A ++F EM    V  +   Y  LL 
Sbjct: 224 ARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLA 283

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
             A AG +D V+ ++++M+  G   D F +  ++ A    NK   A +   +++E
Sbjct: 284 TLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVE 338



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  ++  L +   F     VY  ++  G Q  R  ++ LI    +  +L        +MK
Sbjct: 68  FTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMK 127

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   Y +L++  GK     +A   F+ M +  + PN  TY  L++A    GQLD
Sbjct: 128 IKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLD 187

Query: 164 PVYAIVRDMTAAGAG---------LDKFCYAGLITA 190
               +  +M   G           LD  C AG + A
Sbjct: 188 MALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGA 223



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 8/261 (3%)

Query: 60  LRDVYDDMMLDGVQPTR-DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           L  +  +M+ +G +P R +    LI    +G++  D F   +Q ++    P V  +  LI
Sbjct: 14  LETLLKEMVAEG-RPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLI 72

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            +       ++A  +++++ +   + +   Y  L+     +GQLD    + R+M   G+ 
Sbjct: 73  DILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSE 132

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
            D++ Y  L+ A   K  R  +  +    ++E  +G +    + N   +    V + ++ 
Sbjct: 133 PDEYTYGFLVNA-LGKAGRVQEARSFFDAMLE--RGLTPNIPTYNLLMDAFRKVGQLDMA 189

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
               AE   +R GF   ++T Y++   A      V A   L   +  D  SPD Y     
Sbjct: 190 LGLFAEM--KRRGFQPSVVT-YNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTL 246

Query: 299 IRCYLHSGDIDNGHKVFEDYI 319
           +     SG ++  HKVF + +
Sbjct: 247 VNGLGKSGRVEEAHKVFREMV 267


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/373 (21%), Positives = 153/373 (41%), Gaps = 19/373 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L  ++R      ++D+M+   V P R  +++LI G  K  +L++ F  R++MK
Sbjct: 220 YNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMK 279

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P +  +N L++   + +  ++A R+ EEM+ Y   P+  TY  L +     G +D
Sbjct: 280 VENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVD 339

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVETS 221
               +  +    G  +  +  + L+ A   +  + +A++   K +E      G + V   
Sbjct: 340 ASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLE-----NGLAPVGVF 394

Query: 222 GNNAENE--MMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
            N   N    +G   +    +   E V  R   ++     Y+       E+K+++  E  
Sbjct: 395 FNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVT-----YNSLVKKFCEMKNMEEAEKC 449

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
           ++ + +    P+V      I  Y  S   D   ++ E+       P    Y  L+     
Sbjct: 450 IKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLC- 508

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
                 +  A+  L +M  R +  + ++ +  +L+     +G    A   +D M AR+I 
Sbjct: 509 --KDANILEAEVILGDMVHRGVVPNAQIYN--MLIDGSCIAGKLKDAFRFFDEMVAREIV 564

Query: 400 PSLPAVEAYYNGL 412
           P+L       NGL
Sbjct: 565 PTLVTYNILINGL 577



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 146/386 (37%), Gaps = 34/386 (8%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN++V      +           M+  GV P  + +++LI G  +       F   
Sbjct: 426 NHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQIL 485

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M+  G  P+V  Y  LI+   K  N  +A  I  +M    V PN Q Y  L++    A
Sbjct: 486 EEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIA 545

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKI------IELVEQ 211
           G+L   +    +M A         Y  LI       K+  A++ A++I       +++  
Sbjct: 546 GKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITY 605

Query: 212 SKGWSSVETSGNNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
           +   S   ++GN        V K  ELY     E + + G  +   L  YH     C + 
Sbjct: 606 NSLISGYSSAGN--------VQKALELY-----ETMKKSG--IKPTLNTYHRLIAGCGKE 650

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             V   +   EML+ +   PD  I    I CY+  GD+     +          P    Y
Sbjct: 651 GLVLVEKIYQEMLQMNL-VPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTY 709

Query: 331 ATLVEGAMFGYTPKGMQLAQDTLVN-MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
             L+     G+  +G       LVN M  R +   P+  +  +L+    K   +  A Y+
Sbjct: 710 NCLI----LGHFKEGRMHKVKNLVNDMKIRGLI--PKTETYDILIVGHCKLKDFDGA-YV 762

Query: 390 W-DLMQARKITPSLPAVEAYYNGLKD 414
           W   M     TPS+   +    GL++
Sbjct: 763 WYREMFENGFTPSVSICDNLITGLRE 788



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 1/163 (0%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A E  R+  + +   YN++++  +S        ++Y+ M   G++PT + +H LI G  K
Sbjct: 590 ASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGK 649

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              +     +++ ++ N  +PD  +YN LI    +  +  +A  +   M+   ++P+  T
Sbjct: 650 EGLVLVEKIYQEMLQMN-LVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMT 708

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           Y CL+      G++  V  +V DM   G       Y  LI  H
Sbjct: 709 YNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGH 751



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 36/198 (18%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    N   Y  ++  L           +  DM+  GV P   +++ LI G+   
Sbjct: 486 EEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIA 545

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCK----------------------- 125
            +L+D F F D+M A   +P +  YN LI+ +C K K                       
Sbjct: 546 GKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITY 605

Query: 126 -----------NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
                      N  +A+ ++E MKK  +KP   TY  L+  C   G L  V  I ++M  
Sbjct: 606 NSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQEMLQ 664

Query: 175 AGAGLDKFCYAGLITAHT 192
                D+  Y  LI  + 
Sbjct: 665 MNLVPDRVIYNALIHCYV 682



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 7/171 (4%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      +E   R        YN ++  L  + +     ++  ++   G+      ++
Sbjct: 553 RFF------DEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYN 606

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           SLI G      +Q      + MK +G  P +  Y+ LI+ CGK +      +I++EM + 
Sbjct: 607 SLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGK-EGLVLVEKIYQEMLQM 665

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            + P+   Y  L++     G +    ++   M A G   DK  Y  LI  H
Sbjct: 666 NLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGH 716



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 61/167 (36%)

Query: 10  HHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMML 69
           +H+ + G       +     +E  + N   +   YN ++              ++  M  
Sbjct: 640 YHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEA 699

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
            G+QP +  ++ LI+G  K  R+       + MK  G +P    Y+ LI    K K+ D 
Sbjct: 700 QGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDG 759

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           A   + EM +    P+      L+      G+      I  +M   G
Sbjct: 760 AYVWYREMFENGFTPSVSICDNLITGLREEGRSHDADVICSEMNMKG 806


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 23/311 (7%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+ Y  +   +N ++ +L   ++      V++DM     +P    +  +I  T +  
Sbjct: 67  EMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIG 126

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L ++    ++M   G  P++  YN +I      +  D+ I +F +M +   +PN  TY 
Sbjct: 127 KLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYS 186

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            +L   AA GQL  +  +V     +   +++  YA L+    NK+  A +       +  
Sbjct: 187 VILTLLAAEGQLHKLDKVVE---LSRKYMNRSIYAYLVRT-LNKLGHASEAHRLFCNM-- 240

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNL-PTAE------YVHRRGGFLSRLLTVYHVA 263
               WS  +    +A   M+    E L N   T E       +H +G  ++    +Y+  
Sbjct: 241 ----WSYHDRGDRDACLSML----ESLCNAGKTVEAIDLLGKIHEKG--INTDTIMYNTV 290

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
           F A   LK +  +  L E +K D   PD++     I  +  +G +    K+FE+   S+ 
Sbjct: 291 FTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDC 350

Query: 324 FPPAELYATLV 334
            P    Y +L+
Sbjct: 351 KPDIISYNSLI 361



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+     +++++     +  ++   +   ++MK +G LPD+  YN LIS  G+     +A
Sbjct: 279 GINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEA 338

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           I+IFEE++  + KP+  +Y  L+N     G LD  +   R+M   G   D   Y+ LI  
Sbjct: 339 IKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIEC 398

Query: 191 --HTNKIPRA 198
              T+K+  A
Sbjct: 399 FGKTDKVEMA 408



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 39/181 (21%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF------------------------ 79
           YNTV T+L   ++   L D+Y+ M LDG  P  D+F                        
Sbjct: 287 YNTVFTALGRLKQISHLYDLYEKMKLDG--PLPDIFTYNILISSFGRAGKVYEAIKIFEE 344

Query: 80  -------------HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
                        +SLI    K   L +      +M+  G  PDV  Y+ LI   GK   
Sbjct: 345 LENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDK 404

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            + A R+F+EM      PN  TY  LL+    +G+      +   +   G   D   Y+ 
Sbjct: 405 VEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYSV 464

Query: 187 L 187
           L
Sbjct: 465 L 465



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M  NG    ++  N LI   G  ++ ++ I + E   K+++K NG TY CL+ A   +  
Sbjct: 1   MDKNGVRGTISTVNILIGFFGDGEDLERCIGLIE---KWDLKMNGYTYKCLVQAYLRSCD 57

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            D  + +  +M   G  LD F +  L+ A
Sbjct: 58  SDNGFRVYLEMKRKGYTLDIFAFNMLLDA 86


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/391 (19%), Positives = 165/391 (42%), Gaps = 24/391 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +LT Q+RF  +  +   +  +G++P    F+++I    +   +++      +MK
Sbjct: 109 YTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMK 168

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
             G  P  + +N LI   G     ++ +++ + M + E VKPN +T+  L+ A     ++
Sbjct: 169 DRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRI 228

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIEL----VEQSKGWS 216
              + +V  M A+G   D   Y  L  A+    +  RA+     I+E+    V  ++   
Sbjct: 229 TEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGM---ILEMQNNRVMPNERTC 285

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
            +  +G   E +M    K+ L  L    Y  R  G    L+ +++       ++ D   +
Sbjct: 286 GIIINGYCKEGKM----KDALRFL----YRMRNYGVHPNLV-IFNSLIKGFLDITDTDGV 336

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +  L ++++    PDV      +  +   G +D   ++F+D + +   P    ++ L +G
Sbjct: 337 DEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKG 396

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
            +    P   + A+  L  M    +   P +     +++    +G    A+ +++ M   
Sbjct: 397 YVRAGEP---EKAESLLTAMGKSGV--QPNVVIFTTIISGWCSAGKMEYASRVYEKMCEM 451

Query: 397 KITPSLPAVEAYYNGLKDREVPADDPRLVVV 427
            I P+L   E    G  + + P     L+ +
Sbjct: 452 GICPNLKTFETLIWGYGEAKEPQKAEELLQI 482


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 122/311 (39%), Gaps = 14/311 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R +   +    N ++ SL    +    RDV+D M + G  P    +  ++ G    
Sbjct: 317 KEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  PD+  ++ LI     C   D+A+ IF EM+ + VKP+  TY
Sbjct: 377 GCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 436

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++ A    G++D        M   G   DK+ Y  LI        + +A +    I+E
Sbjct: 437 TTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL---ILE 493

Query: 208 LVEQSKGWSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           ++        V  S   NN       +  + +++L      H      S L+  Y     
Sbjct: 494 IMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGY----- 548

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C   K  +A+     M+    + P+V +    +  Y   G ID G  +F + +     P
Sbjct: 549 -CLVGKMEKALRVFDAMVSAGIE-PNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606

Query: 326 PAELYATLVEG 336
              LY  +++G
Sbjct: 607 STILYNIIIDG 617



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 63/151 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TV+     +       D++ +M+  G+ P    + S++    K   +     F  QM 
Sbjct: 226 YTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMV 285

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD   YN LI          +A+R+F+EM+++ + P+  T   L+ +    G++ 
Sbjct: 286 NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIK 345

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               +   M   G   D F Y  ++  +  K
Sbjct: 346 EARDVFDTMAMKGQNPDVFSYKIMLNGYATK 376



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +++++ +L    R    ++++D  +  G  P   ++  L+ G     +++      D M 
Sbjct: 506 FSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 565

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+V VY  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 566 SAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTV 625

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
           P      +MT +G  ++K  Y
Sbjct: 626 PAKVKFHEMTESGIAINKCTY 646



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 68/164 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y++VV +L   R           M+  GV P    +++LI G    
Sbjct: 247 KEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 306

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + ++      +M+ +  LPDV   N L+    K     +A  +F+ M      P+  +Y
Sbjct: 307 GQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 366

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +LN  A  G L  +  +   M   G   D + ++ LI A+ N
Sbjct: 367 KIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYAN 410


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 133/356 (37%), Gaps = 31/356 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    +A  YN+ + +     ++ +  ++   M   G+ P     +  I    + 
Sbjct: 414 KEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGER 473

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R Q+      QM A G  P+V  YN  I  CGK    ++A+ +  +MK+  + P+  TY
Sbjct: 474 GRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITY 533

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              + AC+  G+     A++R+M   G   D   Y   I A+       +    + +EL+
Sbjct: 534 NSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGK-----NGQWERAVELL 588

Query: 210 EQ--SKGW--------SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
            Q  +KG         S ++  G   E E      +EL     A             L  
Sbjct: 589 RQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPD-----------LMS 637

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
           Y++A  AC +    +    LL  +  +  +PDV      IR     G+ +    +     
Sbjct: 638 YNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMG 697

Query: 320 CSEKFPPAELYATLVEGAMFGYTPKGM-----QLAQDTLVNMNSRNIFLSPRMGSD 370
                P A  Y+  +E    G   +       ++AQ  L + N  N  +   +G D
Sbjct: 698 AHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNSLIVEALGDD 753



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 26/281 (9%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN+V+T    + ++     V  +M   G+ P    ++  I    +  R ++     
Sbjct: 249 DAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVL 308

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM++ G  PDV  Y+  I  CG     + ++ + +EM    V PN   +   + AC   
Sbjct: 309 RQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKG 368

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW---- 215
           GQ +    ++R++TA G   D   +   I A T           + +EL+++        
Sbjct: 369 GQWEKAVELLREVTALGLTPDATSFNSAIAACTK-----SGRWKEALELLKEMPAKRLKP 423

Query: 216 ------SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
                 S++E  G   + EM   + E    +PT        G    +++  ++A  AC E
Sbjct: 424 DAISYNSAIEACGKGGQWEM---ALELRRQMPTK-------GLTPNVIS-SNIAIRACGE 472

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
               Q    LL  +     +P+V      I+     G  + 
Sbjct: 473 RGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEK 513



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 67/160 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A R    +   YN+ + +     ++  +  +  +M   G+ P    ++S+I G  K  
Sbjct: 205 EMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEG 264

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++      +M A G  P+   YN  I  CG+     +A+ +  +M+   V P+  +Y 
Sbjct: 265 QWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYD 324

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + AC   GQ +    ++ +M   G   +   +   I A
Sbjct: 325 AAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVA 364



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 18/259 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A+ +N+ + + T   R+    ++  +M    ++P    ++S I    KG + +     R
Sbjct: 389 DATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELR 448

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM   G  P+V   N  I  CG+     + + +  +M    + PN  TY   +  C   
Sbjct: 449 RQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKG 508

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS------K 213
           GQ +    ++  M       D   Y   I A  +K  R  +    + E+  Q        
Sbjct: 509 GQWEKALDLLAKMKELAMTPDSITYNSAIAA-CSKRGRWKEAVALLREMPGQGLTPDVIS 567

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
             ++++  G N + E    + E L  +PT        G    ++T Y+    AC    + 
Sbjct: 568 YTAAIDAYGKNGQWER---AVELLRQMPTK-------GLTPNVIT-YNSVIKACGRGGEW 616

Query: 274 QAMETLLEMLKKDRKSPDV 292
           +    LL+ LK+   +PD+
Sbjct: 617 EKALDLLKELKETAVAPDL 635



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+ + +  S  ++ +   +  +M    V P    ++S I    +G + +       +M 
Sbjct: 183 YNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMP 242

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PD   YN +I+ CGK     +A+ +  EM    + P   +Y   + AC  +G+  
Sbjct: 243 SVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWK 302

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++R M + G   D   Y   I A
Sbjct: 303 EAVEVLRQMESQGVTPDVISYDAAIKA 329



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 60/147 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E A R  A N   +N+ + +     ++    ++  ++   G+ P    F+S I    K 
Sbjct: 344 DEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKS 403

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++      +M A    PD   YN  I  CGK    + A+ +  +M    + PN  + 
Sbjct: 404 GRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISS 463

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
              + AC   G+      ++R M A G
Sbjct: 464 NIAIRACGERGRWQEGLELLRQMPAQG 490



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 41  ASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           A  Y T +T+   Q    +   LLR++ +    +GV P    ++S I     G + +   
Sbjct: 144 AHSYTTAITTCGRQGQWEKALELLREIPEQ---EGVSPNVFCYNSAIEACGSGDQWEIAV 200

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +M     +PD   YN  I  CG+    ++ I +  EM    + P+  TY  ++  C
Sbjct: 201 SLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGC 260

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              GQ     +++ +M+A G   +   Y
Sbjct: 261 GKEGQWKEALSVLTEMSAKGLTPETISY 288



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D+M   GV        ++     +G   +     R+  +  G  P+V  YN  I  CG
Sbjct: 132 ILDEMKEGGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACG 191

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                + A+ +  EM   EV P+  +Y   + AC   GQ + V  ++R+M + G   D  
Sbjct: 192 SGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAI 251

Query: 183 CYAGLIT 189
            Y  +IT
Sbjct: 252 TYNSVIT 258


>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 73/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ ++ G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +   +PDV  YN +++   + K  ++A + F EMK   ++P   TY  L+    +  ++D
Sbjct: 178 SREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
                V +M   G   +   Y+ L+    N
Sbjct: 238 DALRFVEEMKGFGMKPNAITYSTLLPGLCN 267



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R    +   YNT+V      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   R+ D   F ++MK  G  P+   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L++    AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 133/348 (38%), Gaps = 46/348 (13%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V D M   GV P    + ++I    +  +        +QMK +G +P+V  YN ++++ G
Sbjct: 395 VIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLG 454

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K   S++ I+I  +M+     PN  T+  LL  C   G+   V  + R+M   G    K 
Sbjct: 455 KKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKD 514

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            +  LI+A+                      G    E       +EMM            
Sbjct: 515 TFNTLISAY----------------------GRCGSELDAAKMYDEMM------------ 540

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
                 + GF +   T Y+   +A A   D +A E++L  ++     P+       + CY
Sbjct: 541 ------KAGF-TPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCY 593

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF 362
              G++    ++ +D    + FP   L  TL+         +GM+ A + L+    +   
Sbjct: 594 AKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYK--- 650

Query: 363 LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYN 410
             P M     +++   K+  Y  A  + DL++   + P L    +  N
Sbjct: 651 --PDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMN 696



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 3/188 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+    NA  Y TV+ +     +      +++ M   G  P    ++S++    K SR +
Sbjct: 401 RKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSE 460

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +       M+ NG  P+   +N L+++CG          +F EMK    +P   T+  L+
Sbjct: 461 EMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLI 520

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           +A    G       +  +M  AG       Y  L+ A      R D  A + + L  ++K
Sbjct: 521 SAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALAR---RGDWKAAESVLLDMRNK 577

Query: 214 GWSSVETS 221
           G+   ETS
Sbjct: 578 GFKPNETS 585



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 126/322 (39%), Gaps = 22/322 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   +NT++     + +   +  V+ +M   G +P +D F++LI    + GS L     +
Sbjct: 477 NRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMY 536

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            + MKA GF P    YN L++   +  +   A  +  +M+    KPN  ++  +L+  A 
Sbjct: 537 DEMMKA-GFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAK 595

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
            G +  +  I +D+       D   +   +   T  +      A + +E     + +  +
Sbjct: 596 GGNVRGLERIGKDI------YDGQIFPSWVLLRTLILANFKCRAVRGME-----RAFEEL 644

Query: 219 ETSGNNAE----NEMMGV-SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
             +G   +    N M+ + +K  +Y          R   L   L  Y+   +  A   + 
Sbjct: 645 MKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGEC 704

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
              E +L+ L K  +SPD+      I+ +   G +    +V  +       P    Y T 
Sbjct: 705 WKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTF 764

Query: 334 VEGAMFGYTPKGMQLAQDTLVN 355
           V     GY  +GM    D +++
Sbjct: 765 VS----GYAGRGMFAEVDEVIS 782



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R +  + D+ D+M  +G+Q       ++I    +   + +   F  ++K++G+ P    Y
Sbjct: 282 RSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTY 341

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N L+ V GK     +A+ I +EM+      +  TY  L+ A   AG  +    ++  MT 
Sbjct: 342 NALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTR 401

Query: 175 AGAGLDKFCYAGLITAH 191
            G   +   Y  +I A+
Sbjct: 402 KGVMPNAVTYTTVINAY 418


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 29/295 (9%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++     +  LI G +      + F   ++M  +G  PD A+YN LI    K  N D+A
Sbjct: 474 GIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRA 533

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           IRI E+M+K  ++P+ + +  ++   A AG +     I+  M  +G       Y  LI  
Sbjct: 534 IRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHG 593

Query: 191 --HTNKIPRADDTATKI-IELVEQSKGWSSVETSGNNAENEM-----------MGVSKEE 236
               N++ RA     K+ I  +  ++   ++   G  A  ++            G  K +
Sbjct: 594 LIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLD 653

Query: 237 LYNLPTAEYVHRRGGFLSRLLT---------------VYHVAFHACAELKDVQAMETLLE 281
           +Y   T      + G +   L                VY++     A   DV     L++
Sbjct: 654 VYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMK 713

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            +K+D   P+++     I     +GD+    KV E+       P  + Y TL++G
Sbjct: 714 QMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKG 768



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +     R      V  +M    +     +++ LI G  +   + +      QMK
Sbjct: 657 YETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMK 716

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P++  Y   I+ C K  +  +A ++ EEM    +KPN +TY  L+   A A   D
Sbjct: 717 EDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPD 776

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                  +M  AG   D+  Y  L+T+
Sbjct: 777 RALKSFEEMKLAGLKPDEAAYHCLVTS 803



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 8/213 (3%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A   E + +  A N   YN ++     +   +   D+   M  DGV P    + S I   
Sbjct: 675 AVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINAC 734

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q      ++M   G  P++  Y  LI    K    D+A++ FEEMK   +KP+ 
Sbjct: 735 CKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDE 794

Query: 147 QTYVCLLNACAAAGQL------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             Y CL+ +  +   +        + +I R+M      +D    A   +   +KI R   
Sbjct: 795 AAYHCLVTSLLSRATVMEGSTYTGILSICREMFENDLTVD-MRTAVHWSRWLHKIERTGG 853

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMGVS 233
             T+ ++ +     W+S+E  G  +++   G S
Sbjct: 854 ALTEALQRI-FPPDWNSLEVLGEVSDSPSTGDS 885



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 6/250 (2%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M  DG+    D +HS++ G       +      +++K   F P +  Y  LI++  K  
Sbjct: 399 EMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIG 458

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +AI I +EM+ Y +K N +TY  L++           ++I  +M  +G   D+  Y 
Sbjct: 459 KVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYN 518

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
            LI A   K+    D A +I+E +++ +   S        E   +    +   N+     
Sbjct: 519 LLIEAFC-KMGNM-DRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILD--- 573

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
           + RR G    ++T Y+   H   +   V+   ++L  +     +P+ +     +R Y  +
Sbjct: 574 LMRRSGCAPTVMT-YNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAAN 632

Query: 306 GDIDNGHKVF 315
           GDI    + F
Sbjct: 633 GDIGKAFEYF 642



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ D M   G  PT   +++LI G +K ++++      ++M   G  P+   + Y I + 
Sbjct: 570 NILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNE--HTYTIIMR 627

Query: 122 GKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G   N D  +A   F ++K+  +K +   Y  LL AC  +G++    A+ R+M+      
Sbjct: 628 GYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIAR 687

Query: 180 DKFCYAGLI 188
           + F Y  LI
Sbjct: 688 NTFVYNILI 696



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 18/177 (10%)

Query: 34  RRNYANNASEYNTVVTSLT-----SQRRFFLL-------------RDVYDDMMLDGVQPT 75
           RR   +   ++  VV++       S+R F L+             R  +++M   G++P 
Sbjct: 244 RRVVESRPEDWQAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPN 303

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
             +F SL+        ++      ++MKA G    +  Y+ +I+   K  ++  A  +F+
Sbjct: 304 AFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFK 363

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           E K      NG  Y  +++A   +G +D    +VR+M   G       Y  ++  +T
Sbjct: 364 EAKAKLGDLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYT 420


>gi|255593593|ref|XP_002535906.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223521567|gb|EEF26476.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 183

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           + +NAS YNT++  L  + +    RD+  DM  +G+ P R+ F+ L+ G  K   L++  
Sbjct: 7   FPDNAS-YNTILDVLCKKGKLNEARDLLLDMKNNGLFPDRNTFNILVSGYCKLGWLKEAA 65

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              D M  N  LPDV  YN LI   G CK+   D A R+ +EM+  ++ P+  TY  L+N
Sbjct: 66  QVIDVMARNNILPDVWTYNMLIG--GLCKDGKIDGAFRLRDEMENLKLLPDVVTYTTLIN 123

Query: 155 ACAAAGQLDPVYAIVRDMTAAGA 177
            C         + ++ +M   G 
Sbjct: 124 GCFEYSSSLKGFELIDEMEGKGV 146


>gi|18642701|gb|AAL76193.1|AC092173_5 Putative crp1 protein [Oryza sativa Japonica Group]
          Length = 1089

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 487 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ 546

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKG
Sbjct: 547 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKG 601



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P ++ +N L+SVC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +
Sbjct: 459 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 518

Query: 169 VRDMTAAGAGLDKFCYAGLI 188
             +M +AG   +   Y+ LI
Sbjct: 519 FHEMVSAGIEPNVNTYSALI 538



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  + +   GAL     +  AG +         +   Y T++++     +   + +
Sbjct: 466 MLLSVCANSQDFDGALQVMVLLKEAGLKP--------DCKLYTTLISTCAKCGKVDAMFE 517

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 518 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 577

Query: 123 KCKNSDQAIRIFEEMK--------KYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM            + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 578 ESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 637

Query: 172 MTAAG 176
               G
Sbjct: 638 YNIKG 642



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 50  SLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFL 108
           SLT    F L   +Y+DM   GVQP  ++F S +V     +R  D  F      +A G+ 
Sbjct: 655 SLTGDLGFAL--KIYEDMNKIGVQPD-EMFLSALVDVAGHARRADAAFEIMKDARAKGYQ 711

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
                Y+ L+  C   K+  +A+++FEE+K  ++ P       L+ A     Q+   + +
Sbjct: 712 VGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEV 771

Query: 169 VRDMTAAGAGLDKFCYAGLITA 190
           + +M   G   +   Y+ L  A
Sbjct: 772 LSEMKRLGVCPNMITYSVLFVA 793



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   +  C    +   A++I+E+M K  V+P+      L++    A + D  + I++D 
Sbjct: 646 VYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDA 705

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMG 231
            A G  +    Y+ L+ A  N    A D   K ++L E+ K    + T S  NA    + 
Sbjct: 706 RAKGYQVGTIAYSSLMGACCN----AKDW-KKALQLFEEIKSIKLMPTVSMMNALITALC 760

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
              + L +      + +R G    ++T Y V F AC    + Q    L E LK D
Sbjct: 761 DGDQVLKSFEVLSEM-KRLGVCPNMIT-YSVLFVACERNAEAQLGLDLFEQLKID 813



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/113 (18%), Positives = 52/113 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++++ +  + + +     +++++    + PT  + ++LI     G ++  +F    +MK
Sbjct: 717 YSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMK 776

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             G  P++  Y+ L   C +   +   + +FE++K   +  N     CL   C
Sbjct: 777 RLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLC 829


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 129/322 (40%), Gaps = 25/322 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   Y+ ++ +   +R+FF   ++YD+M+  G+ P    ++S+I G  K 
Sbjct: 308 QEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQ 367

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           +RL         M   G  PDV  +N LI   CG  K  D    +  EM +  +  +  T
Sbjct: 368 NRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGA-KRIDDGTELLHEMTETGLVADTTT 426

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAG-----LITAHTNK 194
           Y  L++     G L+    + + M ++G           LD  C  G     L      +
Sbjct: 427 YNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 486

Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
             + D  A++    VE      ++  SG    NE   +  EELY     E  HR  G + 
Sbjct: 487 KSKMDLDASRPFNGVEPDVQTYNILISG--LINEGKFLEAEELYK----EMPHR--GIVP 538

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             +T   +    C + +  +A +    M  K   SPDV      +  Y  +G +D+G ++
Sbjct: 539 NTITYSSMINGLCKQSRLDEATQMFDSMGSKSF-SPDVVTFNTLVSGYCKAGRVDDGLEL 597

Query: 315 FEDYICSEKFPPAELYATLVEG 336
           F +         A  Y TL+ G
Sbjct: 598 FCEMGRRGIVADAITYITLIHG 619



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y +M   G+ P    + S+I G  K SRL +     
Sbjct: 504 DVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMF 563

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M +  F PDV  +N L+S   K    D  + +F EM +  +  +  TY+ L++     
Sbjct: 564 DSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKV 623

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G ++    I ++M ++G   D      ++T   +K
Sbjct: 624 GNINGALDIFQEMISSGVYPDTITIRSMLTVLWSK 658



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/316 (19%), Positives = 125/316 (39%), Gaps = 43/316 (13%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D M+ DG+QP +  + +++ G  K G  +      
Sbjct: 177 NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLL 236

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R   + +   P+V +Y+ +I    K      A  ++ EM++  + P+  TY C+++   +
Sbjct: 237 RKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCS 296

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
           +G+      ++++M       +   Y+ LI A+                 V++ K + + 
Sbjct: 297 SGRWSEAQRLLQEMLERKINPNVVTYSALINAY-----------------VKERKFFEA- 338

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
                           EELY+    E + R  G +   +T Y+       +   + A E 
Sbjct: 339 ----------------EELYD----EMLPR--GIIPNTIT-YNSMIDGFCKQNRLDAAEH 375

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-A 337
           +  ++     SPDV+     I  Y  +  ID+G ++  +   +        Y TL+ G  
Sbjct: 376 MFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFC 435

Query: 338 MFGYTPKGMQLAQDTL 353
           + G     + L+Q  +
Sbjct: 436 LVGDLNAALDLSQQMI 451


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +  A +   YN ++     +       +++++M   GV+ T   + SLI    K 
Sbjct: 203 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 262

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++Q+T    D+    G  PD+ +YN LI+      N D+A  I  EM+K  + P+  TY
Sbjct: 263 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 322

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+      G++D    ++ +MT  G   D   Y  LI+ ++ K
Sbjct: 323 NTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMK 367



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 120/317 (37%), Gaps = 25/317 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMK 88
           E   R   A N   Y TV++      R      V+D+M+  G V+P   ++++LI G   
Sbjct: 97  EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             +L     +RD+M   G    VA YN L+          +A  + EEM    + P+  T
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 216

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKII 206
           Y  L+N     G +     I  +M+  G       Y  LI A + K  +   D    + +
Sbjct: 217 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 276

Query: 207 ------ELVEQSKGWSSVETSGN-NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
                 +LV  +   +S  TSGN +   E+MG            E   +R   ++     
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMG------------EMEKKR---IAPDDVT 321

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
           Y+        L  V     L++ + K    PD+      I  Y   GD+ +  ++  + +
Sbjct: 322 YNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM 381

Query: 320 CSEKFPPAELYATLVEG 336
                P    Y  L++G
Sbjct: 382 NKGFNPTLLTYNALIQG 398



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 143/391 (36%), Gaps = 54/391 (13%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVG 85
           A A E  R+    NA  YNTV+    S+ R     D+  +M    G+ P +  + ++I G
Sbjct: 58  ARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 117

Query: 86  TMKGSRLQDTFFFRDQMKANGFL-PDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEV 142
             K  R+ +     D+M   G + P+  +YN LI   G C     D A+   + M +  V
Sbjct: 118 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG--GYCDQGKLDTALLYRDRMVERGV 175

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
                TY  L++A    G+    Y +V +M   G   D F Y  LI  H       +   
Sbjct: 176 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK-----EGNV 230

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV 262
            K +E+ E                                   + RRG  +   +  Y  
Sbjct: 231 KKALEIFEN----------------------------------MSRRG--VRATVVTYTS 254

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             +A ++   VQ  + L +   +    PD+ +    I  +  SG+ID   ++  +     
Sbjct: 255 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 314

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y TL+ G  + G   +  +L  +    M  R I   P + +   L++     G
Sbjct: 315 IAPDDVTYNTLMRGLCLLGRVDEARKLIDE----MTKRGI--QPDLVTYNTLISGYSMKG 368

Query: 382 GYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               A  I + M  +   P+L    A   GL
Sbjct: 369 DVKDALRIRNEMMNKGFNPTLLTYNALIQGL 399



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 69/171 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR    +   YN ++ S ++        ++  +M    + P    +++L+ G    
Sbjct: 273 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 332

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +     D+M   G  PD+  YN LIS      +   A+RI  EM      P   TY
Sbjct: 333 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 392

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             L+      GQ D    +V++M   G   D   Y  LI   T +  RA D
Sbjct: 393 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAID 443



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 1/182 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  +RR        Y +++ +L+ + +      ++D+ +  G++P   L+++LI      
Sbjct: 238 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 297

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F    +M+     PD   YN L+         D+A ++ +EM K  ++P+  TY
Sbjct: 298 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTY 357

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++  +  G +     I  +M   G       Y  LI     K  + DD    + E+V
Sbjct: 358 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLC-KNGQGDDAENMVKEMV 416

Query: 210 EQ 211
           E 
Sbjct: 417 EN 418


>gi|125531299|gb|EAY77864.1| hypothetical protein OsI_32907 [Oryza sativa Indica Group]
          Length = 1089

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 487 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ 546

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKG
Sbjct: 547 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKG 601



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P ++ +N L+SVC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +
Sbjct: 459 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 518

Query: 169 VRDMTAAGAGLDKFCYAGLI 188
             +M +AG   +   Y+ LI
Sbjct: 519 FHEMVSAGIEPNVNTYSALI 538



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  + +   GAL     +  AG +         +   Y T++++     +   + +
Sbjct: 466 MLLSVCANSQDFDGALQVMVLLKEAGLKP--------DCKLYTTLISTCAKCGKVDAMFE 517

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 518 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 577

Query: 123 KCKNSDQAIRIFEEMK--------KYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM            + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 578 ESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 637

Query: 172 MTAAG 176
               G
Sbjct: 638 YNIKG 642



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 50  SLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFL 108
           SLT    F L   +Y+DM   GVQP  ++F S +V     +R  D  F      +A G+ 
Sbjct: 655 SLTGDLGFAL--KIYEDMNKIGVQPD-EMFLSALVDVAGHARRADAAFEIMKDARAKGYQ 711

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
                Y+ L+  C   K+  +A+++FEE+K  ++ P       L+ A     Q+   + +
Sbjct: 712 VGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEV 771

Query: 169 VRDMTAAGAGLDKFCYAGLITA 190
           + +M   G   +   Y+ L  A
Sbjct: 772 LSEMKRLGVCPNMITYSVLFVA 793



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   +  C    +   A++I+E+M K  V+P+      L++    A + D  + I++D 
Sbjct: 646 VYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDA 705

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMG 231
            A G  +    Y+ L+ A  N    A D   K ++L E+ K    + T S  NA    + 
Sbjct: 706 RAKGYQVGTIAYSSLMGACCN----AKDW-KKALQLFEEIKSIKLMPTVSMMNALITALC 760

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
              + L +      + +R G    ++T Y V F AC    + Q    L E LK D
Sbjct: 761 DGDQVLKSFEVLSEM-KRLGVCPNMIT-YSVLFVACERNAEAQLGLDLFEQLKID 813



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/113 (18%), Positives = 52/113 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++++ +  + + +     +++++    + PT  + ++LI     G ++  +F    +MK
Sbjct: 717 YSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMK 776

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             G  P++  Y+ L   C +   +   + +FE++K   +  N     CL   C
Sbjct: 777 RLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLC 829


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 138/358 (38%), Gaps = 25/358 (6%)

Query: 16  GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G LG+  RF V      E +R     N   +NT++     +     +  V + M   GV+
Sbjct: 406 GMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVE 465

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
             RD F++LI    +     + F   D+M A GF P +  YN L+SV  +  +   A  I
Sbjct: 466 LCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSI 525

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +MK    KPN  +Y  LL   A  G    + AI           +K  Y G +     
Sbjct: 526 INKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAI-----------EKEVYEGTVFPSWV 574

Query: 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGV-SKEELYNLPTAEYVHR 248
            +     +  K   L    + +  V   G+  +    N M+ + +K  +Y      +   
Sbjct: 575 ILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSI 634

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
           + G LS  L  Y+      A+  +    E +L+ LK  +  PDV      +  +   G I
Sbjct: 635 KQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLI 694

Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSP 365
               ++  + I     P    Y TLV     GY  + M   A++ +  M  RN  LSP
Sbjct: 695 KEAQRILSEMIADGVRPCVVTYHTLVG----GYASREMFSEAREVVSYMIQRN--LSP 746



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 64/129 (49%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M   GV+P      ++I    +   + +   F + +K+ G +P V  YN L+ V GK 
Sbjct: 247 EEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKA 306

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            N  +A+R+ +EM++   KP+  TY  L  + A AG  +     +  M + G   + F Y
Sbjct: 307 GNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTY 366

Query: 185 AGLITAHTN 193
             ++TA+ N
Sbjct: 367 NTIMTAYGN 375



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 17/181 (9%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M+  G+ P    +++++       ++ +     D MK NGF+P V  YN ++ + GK 
Sbjct: 352 DTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKK 411

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              +  + +  EM +    PN  T+  +L  C   G    V  ++  M + G  L +  +
Sbjct: 412 SRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTF 471

Query: 185 AGLITAHTNKIPRAD-----------------DTATKIIELVEQSKGWSSVETSGNNAEN 227
             LI+A+     RA+                  T   ++ ++ +   W++ ++  N  +N
Sbjct: 472 NTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKN 531

Query: 228 E 228
           E
Sbjct: 532 E 532



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 2/178 (1%)

Query: 13  SVGGALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           +V  A GR   V  A A  E+   R +      YN ++        +     V  +M   
Sbjct: 263 TVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEES 322

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G +P    ++ L     +    ++     D M + G LP+   YN +++  G     D+A
Sbjct: 323 GCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEA 382

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + +F+ MKK    P   TY  +L       + + +  ++ +M+ +G   ++  +  ++
Sbjct: 383 LALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTML 440



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMK 103
           VV +L  + +   + D+ D+M+ L    P  D+  + +++       R +       ++K
Sbjct: 155 VVRTLAREGQHDAVCDLLDEMLPLPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELK 214

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             G  P   +YN ++ V G+   S  Q + + EEM+   V+P+G T   ++ AC   G +
Sbjct: 215 REGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLV 274

Query: 163 DPVYAIVRDMTAAG 176
           D   A   D+ + G
Sbjct: 275 DEAVAFFEDLKSRG 288


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  +  EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNXLIY--GLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGN 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LB  +     M      LD   Y  LI+ 
Sbjct: 333 LBTAFEHRXRMIEENIRLDDVAYTALISG 361



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 24/283 (8%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D +   G++P+   +++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+  G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLIN--G 221

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK    D A  +F+EM    + PN  T+  L++     G++D    I + M +     D
Sbjct: 222 LCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281

Query: 181 KFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
              Y  LI     K  + +A+D   ++       KG    + +     +   G  KE   
Sbjct: 282 LITYNXLIYGLCKKGDLKQANDLIXEM-----SMKGLKPDKITYTTLID---GCCKEG-- 331

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVY 293
           NL TA     R   +   + +  VA+ A     C E + V A + L  ML    K PD  
Sbjct: 332 NLBTA--FEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLK-PDAX 388

Query: 294 IVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                I  +   GD+  G K+ ++       P    Y  L+ G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 60/165 (36%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   + P    ++ LI G  K 
Sbjct: 236 DEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKK 295

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+       +M   G  PD   Y  LI  C K  N B A      M +  ++ +   Y
Sbjct: 296 GDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAY 355

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R M + G   D   Y  +I     K
Sbjct: 356 TALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKK 400


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++     + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 198 YSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQML 257

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 258 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGD 315

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD+  Y  LI+ 
Sbjct: 316 LDSAFEHXKRMIQENXRLDEVXYTALISG 344



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GVQP    +  LI G  K S+  D     D+M   G +P+   +  LI   G CKN
Sbjct: 186 MLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLID--GHCKN 243

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L   + ++ +M+  G   DK  Y
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 303

Query: 185 AGLI 188
             LI
Sbjct: 304 TTLI 307



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 128/314 (40%), Gaps = 20/314 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          J + V+D +   G++P+   +++L+ G ++ 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 173

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PN  
Sbjct: 174 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GXCKESKXDDANELFDEMLVKGLVPNXV 231

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
            +  L++     G++D    I + M +     D   Y  LI     K  + +A     ++
Sbjct: 232 XFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 291

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L +A E+  R      RL  V + A 
Sbjct: 292 -----SXKGLKPDKITYTTLID---GCCKEG--DLDSAFEHXKRMIQENXRLDEVXYTAL 341

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
            +  C E + V A + L EML    K PD       I  +   GD+  G K+ ++     
Sbjct: 342 ISGLCXEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 400

Query: 323 KFPPAELYATLVEG 336
             P    Y  L+ G
Sbjct: 401 HVPSVVTYNVLMNG 414


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + R  +   ++D+M   G++P    F +LI G  +  R+        QM 
Sbjct: 296 YSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQML 355

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+ +YN L++   K  + ++A ++ +EM+   +KP+  TY  L++     G L+
Sbjct: 356 TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLE 415

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               I + M   G  LD   +  LI+    +  R  D    + E+VE
Sbjct: 416 SAMEIRKGMNEEGVVLDNVAFTALISGFC-RDGRVRDAERTLREMVE 461



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 20/300 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     +      + +++++   G++PT   F++LI G  K   L + F  +  M+
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            N   PDV  Y+ LI   G CK    D A ++F+EM++  ++PNG T+  L++    + +
Sbjct: 286 ENRIYPDVFTYSVLIH--GLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRR 343

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           +D        M   G   D   Y  L+    N + +  D   K  +LV++ +    ++  
Sbjct: 344 IDSAMNTYHQMLTMGVKPDLVMYNTLL----NGLCKVGD-VNKARKLVDEMR-MVGMKPD 397

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAM 276
                  + G  KE   +L +A  +  R G     + + +VAF A     C + +   A 
Sbjct: 398 KITYTTLIDGYCKEG--DLESAMEI--RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            TL EM++   K  D    M  I  Y   G++  G K+ ++   +   P    Y  L+ G
Sbjct: 454 RTLREMVEAGMKPDDATYTMV-IDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 4/167 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    N   +  ++      RR     + Y  M+  GV+P   ++++L+ G  K 
Sbjct: 317 DEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKV 376

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +       D+M+  G  PD   Y  LI   G CK  D   A+ I + M +  V  +  
Sbjct: 377 GDVNKARKLVDEMRMVGMKPDKITYTTLID--GYCKEGDLESAMEIRKGMNEEGVVLDNV 434

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +  L++     G++      +R+M  AG   D   Y  +I  +  K
Sbjct: 435 AFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKK 481



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 5/141 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++   M  +GV      F +LI G  +  R++D      +M   G  PD A Y  +I   
Sbjct: 419 EIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVID-- 476

Query: 122 GKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK  N     ++ +EM+    KP   TY  L+N     GQ+     ++  M   G   
Sbjct: 477 GYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTP 536

Query: 180 DKFCYAGLITAHTNKIPRADD 200
           D   Y  L+  H  K  +A+D
Sbjct: 537 DDITYNILLEGHC-KNGKAED 556


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +L  + R    RD+  DM   G+ P R+ ++ L+ G  K   L++     + M 
Sbjct: 246 YNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMT 305

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            N  LPDV  YN LI+  G C     ++A ++ +EM+  ++ P+  +Y  L+N C    +
Sbjct: 306 QNNLLPDVWTYNMLIN--GLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
           +   + ++ +M+  G   +   +  ++  +    K+  A +T TK+ E
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEE 411



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++++  G+ P    +++++ G  +   ++  F F ++M  N F PDV   N L+   G C
Sbjct: 547 NELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLR--GLC 604

Query: 125 KNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                ++A+++F          +  TY  L+ +    G+LD  + ++ +M     G D +
Sbjct: 605 MEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 183 CYAGLITAHTN--KIPRADDTATKIIE 207
            Y  +ITA T+  +I  A++  +K++E
Sbjct: 665 TYNAIITALTDSGRIREAEEFMSKMLE 691



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 112/304 (36%), Gaps = 32/304 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++       +      + ++M   GV+P     + ++    K  ++ D      +M+
Sbjct: 351 YNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME 410

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +GF PD   YN LI+   K  N  +A R  +EM +  +K +  T   +L       +L+
Sbjct: 411 ESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE 470

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y ++      G  +D+  Y  LI  +       D    + ++L ++ K          
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYF-----KDGNVDRALKLWDEMK---------- 515

Query: 224 NAENEMMGVSKEELYNL---------PTAEYVHRRGGFLSRLL----TVYHVAFHACAEL 270
             E E+  +     YN           T + + +    L   L    T Y+   H     
Sbjct: 516 --EKEI--IPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCRE 571

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
            DV+        + ++   PDV+     +R     G ++   K+F  ++   K      Y
Sbjct: 572 GDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTY 631

Query: 331 ATLV 334
            TL+
Sbjct: 632 NTLI 635



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 5/183 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R Y  +   Y T++              ++D+M    + P+   ++ +I G  +  + +
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVC 151
                 +++  +G LPD   YN ++   G C+  D  +A +   +M +   KP+  T   
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILH--GYCREGDVEKAFQFHNKMVENSFKPDVFTCNI 598

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           LL      G L+    +     + G  +D   Y  LIT+   K  R DD    + E+ E+
Sbjct: 599 LLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLC-KEGRLDDAFNLLSEMEEK 657

Query: 212 SKG 214
             G
Sbjct: 658 ELG 660



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 5/154 (3%)

Query: 45  NTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           NT++ SL    S       R+ ++D +  G+ P  + F+ +I G    ++ +D   F + 
Sbjct: 174 NTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNV 233

Query: 102 MKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           M      PD   YN ++ ++C K +  D A  +  +MK   + PN  TY  L+      G
Sbjct: 234 MGKYNCSPDNVTYNTILDTLCKKGRLGD-ARDLLMDMKSRGLLPNRNTYNILVYGYCKMG 292

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            L     ++  MT      D + Y  LI    N+
Sbjct: 293 WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNE 326


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     D++++M+  G+ P    F +LI G  K  ++        QM 
Sbjct: 209 YSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +  FLPD+  YN LI   G CK  D  QA  + +EM+   +KP+  TY  L++     G 
Sbjct: 269 SQCFLPDLITYNTLIY--GLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           LD  + +   M      LD   Y  LI+    +  RA D    + E++
Sbjct: 327 LDSAFELRETMVKESIRLDDVAYTALISGLCQE-GRATDAEKMLREML 373



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +   ++ + V+D +   G++P+   F++L+ G ++   L   F  ++ M 
Sbjct: 139 FNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMH 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  ++A  +F EM    + PNG T+  L++     G+
Sbjct: 199 ASGVQPDVYTYSVLIN--GLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGK 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +D      + M +     D   Y  LI
Sbjct: 257 VDSAMETYKQMLSQCFLPDLITYNTLI 283



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L   F  R+ M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMV 338

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + + +D A ++  EM    +KP+  TY  ++N       +
Sbjct: 339 KESIRLDDVAYTALISGLCQEGRATD-AEKMLREMLSVGLKPDNGTYTMIINEFCKKEDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 KTAAKLLKEMQRQG 411



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + Y  M+     P    +++LI G  K   L+      D+M+  G  PD   Y  LI   
Sbjct: 262 ETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLID-- 319

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK    D A  + E M K  ++ +   Y  L++     G+      ++R+M + G   
Sbjct: 320 GNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKP 379

Query: 180 DKFCYAGLITAHTNKIPRADD--TATKIIE 207
           D   Y  +I    N+  + +D  TA K+++
Sbjct: 380 DNGTYTMII----NEFCKKEDVKTAAKLLK 405


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 10/299 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++ S+   +      D++ +M+  G+ P    + +LI G     +L+D     
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLF 283

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M      PDV  +N L++   K     +   +F+ M K  +KPN  TY  L++     
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +++   +I   M   G   D   Y+ +I     KI + D+ A  + + + +      V 
Sbjct: 344 KEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFC-KIKKFDE-AMNLFKEMHRKNIIPDVV 401

Query: 220 TSGNNAENEMMGVSKEE--LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
           T  +  +    G+SK     Y L   + +H RG  +   +  Y+    A  +   V    
Sbjct: 402 TYSSLID----GLSKSGRISYALQLVDQMHDRG--VPPNICTYNSILDALCKTHQVDKAI 455

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            LL   K     PD+      I+    SG +++  KVFED +          Y  +++G
Sbjct: 456 ALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQG 514



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 6/179 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+N   +   Y++++  L+   R      + D M   GV P    ++S++    K 
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKT 448

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            ++        + K  GF PD++ Y+ LI   G C++   + A ++FE++       +  
Sbjct: 449 HQVDKAIALLTKFKDKGFQPDISTYSILIK--GLCQSGKLEDARKVFEDLLVKGYNLDVY 506

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            Y  ++      G  +   A++  M   G   D   Y  +I +   K    +D A K++
Sbjct: 507 AYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKK--DENDMAEKLL 563


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 10/219 (4%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    + +L+ G  K  RL++      +MK N   PD   YN LI   GK   +D A  +
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGL 414

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           F+EMK   + PN +TY  +++    AG+    + +  D+   GA  D F Y  LI     
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDV-LG 473

Query: 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFL 253
           K  + D     I E+VE  KG   + +  +NA +E      +     P+        GF 
Sbjct: 474 KGGQMDKVLAIIKEMVE--KGGECIISRDSNAGHEGTIEGADRTVEYPSL-------GFK 524

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292
           S     Y+    A      V     LLE++KK    P V
Sbjct: 525 SLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTV 563



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+V  L    R     +V+ +M  +   P    +++LI G  K           
Sbjct: 356 NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLF 415

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK  G +P++  YN +ISV GK     +A ++F ++K+    P+  TY  L++     
Sbjct: 416 KEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKG 475

Query: 160 GQLDPVYAIVRDMTAAGA 177
           GQ+D V AI+++M   G 
Sbjct: 476 GQMDKVLAIIKEMVEKGG 493



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+    + S Y+ V+  L          DV+  M  +G++P    + +L+   +K 
Sbjct: 622 DEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKD 681

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++       ++++ +  +PD  VYN +++   K    D+A ++ + MK   + P+  TY
Sbjct: 682 EKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTY 741

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             LL+    +G+L+  + +   MT  G   D   Y  L+
Sbjct: 742 TSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLM 780



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI    K  R+++ ++F +   + G  P+V VY+ LI   GK    D+A+ +FEEM+
Sbjct: 811 YSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQ 870

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + +  PN  TY  LL+  A AG+L+    ++ +M   G   D   Y  LI
Sbjct: 871 RRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILI 920



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 12/252 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V  L    R      + D M    + P    + SL+ G  K  RL++ F    +M 
Sbjct: 706 YNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMT 765

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y  L+ V GK      A+ IF  M K    P+  TY  L+++    G+++
Sbjct: 766 EEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y    +  + G   +   Y+ LI +   K     D A ++ E +++ +   ++ T   
Sbjct: 826 EAYYFFENSISKGCTPNVGVYSSLIDSFGKK--GMVDRALELFEEMQRRQCPPNIVT--- 880

Query: 224 NAENEMMGVSKEELYNLPTAEYV---HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
              N + G++K    N+  AE +     + G +  L+T Y++      ++  V   E+  
Sbjct: 881 -YNNLLSGLAKAGRLNV--AEKLLEEMEKVGCVPDLVT-YNILIDGVGKMGMVDEAESYF 936

Query: 281 EMLKKDRKSPDV 292
           + +K+    PDV
Sbjct: 937 KRMKEKGIVPDV 948



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE  RR    N   YN +++ L    R  +   + ++M   G  P    ++ LI G  K 
Sbjct: 867  EEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKM 926

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              + +   +  +MK  G +PDV  +  LI   GK     +A  +F+ M++    P+  TY
Sbjct: 927  GMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTY 986

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGA 177
              L++    AG++     I  +M   G 
Sbjct: 987  NVLIDILGRAGKVHEAAMIFHEMKVKGC 1014



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 65/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+++SL    +      +++++    + P   +++ ++ G +K +R+ +     D MK
Sbjct: 671 YKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMK 730

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
               LPD+  Y  L+   GK    ++A  +F +M +   +P+   Y  L++     G+L 
Sbjct: 731 NQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLS 790

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               I R M       D   Y+ LI
Sbjct: 791 HALIIFRAMAKKRCVPDVVTYSSLI 815



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 148/388 (38%), Gaps = 49/388 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+V  L    R      +  +M   G +P+   + SL+    K  + +++    D+M 
Sbjct: 566 YTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMV 625

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G + DV+ Y+ +I+   K  + DQA+ +F  MK+  ++P    Y  LL++     ++D
Sbjct: 626 RKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKID 685

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               I  ++  +    D F Y  ++     +N++    D A K+++ ++       + T 
Sbjct: 686 FALQIFNELQESSLVPDTFVYNIMVNGLVKSNRV----DEACKLVDSMKNQNILPDLFTY 741

Query: 222 GNNAENEMMGVSKEELYNLPT--AEYVHR--------------RGGFLSRLLTVYHVAFH 265
            +  +        EE +N+ T   E  H               +GG LS  L ++     
Sbjct: 742 TSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRA--- 798

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
                            + K R  PDV      I      G ++  +  FE+ I     P
Sbjct: 799 -----------------MAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTP 841

Query: 326 PAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
              +Y++L++     +  KGM   A +    M  R     P + +   L++   K+G   
Sbjct: 842 NVGVYSSLID----SFGKKGMVDRALELFEEMQRRQC--PPNIVTYNNLLSGLAKAGRLN 895

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGL 412
            A  + + M+     P L       +G+
Sbjct: 896 VAEKLLEEMEKVGCVPDLVTYNILIDGV 923



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           GG L     +  A     A++    +   Y++++ SL  + R       +++ +  G  P
Sbjct: 786 GGKLSHALIIFRA----MAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTP 841

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
              ++ SLI    K   +       ++M+     P++  YN L+S   K    + A ++ 
Sbjct: 842 NVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLL 901

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           EEM+K    P+  TY  L++     G +D   +  + M   G   D   +  LI      
Sbjct: 902 EEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLI------ 955

Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNN 224
                ++  K+ +L+E  + + S+E  G N
Sbjct: 956 -----ESLGKVDKLLEACELFDSMEEEGYN 980



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 46/117 (39%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           +QP    F   +    +  RL        +M  +G  P V  +  LI    K  N D+A 
Sbjct: 283 IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEAC 342

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + F  MK     PN  TY  L+N  A AG+L+    +  +M       D   Y  LI
Sbjct: 343 KFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLI 399



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           + F T AG ++     Y++    Y  ++  L   +    +  +   M  +G + +  L  
Sbjct: 166 KCFFTWAGQQD----GYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLT 221

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           SL+      + +       +QMK+ G  P   +YN+++ +  K      A+ +F ++ ++
Sbjct: 222 SLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQF 281

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            ++P+ QT+   +++   +G+LDP    +++M  +G       +  LI A
Sbjct: 282 RIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDA 331



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 16/195 (8%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E    N + +A  YNT++  L       +   ++ +M   G+ P    ++ +I    K  
Sbjct: 382 EMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAG 441

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R  + +     +K  G +PDV  YN LI V GK    D+ + I +EM    V+  G+   
Sbjct: 442 RQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM----VEKGGE--- 494

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAG---LDKFCYAGLITA--HTNKIPRADDTATKI 205
           C+++  + AG    +    R +     G   L +  Y  L++A  H   +    D A K+
Sbjct: 495 CIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHV----DEAVKL 550

Query: 206 IELVEQSKGWSSVET 220
           +E++++ +   +V T
Sbjct: 551 LEVMKKHECIPTVVT 565



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 56/137 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  +   V S     R     +   +M+  G+ P    F  LI   +K   + +   F 
Sbjct: 286 DAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFF 345

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + MK     P+V  Y  L++   K    ++A  +F EMK+    P+   Y  L++    A
Sbjct: 346 NGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKA 405

Query: 160 GQLDPVYAIVRDMTAAG 176
           G+ D    + ++M   G
Sbjct: 406 GEADMACGLFKEMKDRG 422



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 51/134 (38%)

Query: 15   GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            G A   R  V     EE  +     +   YN ++  +            +  M   G+ P
Sbjct: 887  GLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVP 946

Query: 75   TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
                F SLI    K  +L +     D M+  G+ P V  YN LI + G+     +A  IF
Sbjct: 947  DVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIF 1006

Query: 135  EEMKKYEVKPNGQT 148
             EMK     P+G T
Sbjct: 1007 HEMKVKGCMPDGIT 1020



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           YN L+S      + D+A+++ E MKK+E  P   TY  L++    AG+LD   +++R+M 
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREME 590

Query: 174 AAGAGLDKFCYAGLITA 190
             G       Y+ L+ +
Sbjct: 591 KQGCEPSVVTYSSLMAS 607



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +++L+   +    + +     + MK +  +P V  Y  L+   GK    D+A+ +  EM+
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREME 590

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
           K   +P+  TY  L+ +     Q +   ++  +M   G   D   Y+ +I    N + ++
Sbjct: 591 KQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVI----NCLCKS 646

Query: 199 DDT 201
           DD 
Sbjct: 647 DDV 649


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 143/337 (42%), Gaps = 9/337 (2%)

Query: 2   RLLQSIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
           R L SI+  +K +   A  ++F +  +  E+  R   ++N   YN ++     + +  L 
Sbjct: 5   RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
             +   MM  G +P+     SL+ G   G R+ D     DQM   G+ PD   +  LI  
Sbjct: 65  LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                 + +A+ + + M +   +PN  TY  ++N     G +D  + ++  M AA    D
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
              +  +I +   K    DD      E+  ++KG      + ++  + +    +    + 
Sbjct: 185 VVIFNTIIDSLC-KYRHVDDALNLFKEM--ETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
             ++ + ++   ++  L  ++    A   E K V+A +   +M+K+    PD++     I
Sbjct: 242 LLSDMIEKK---INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR-SIDPDIFTYNSLI 297

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             +     +D   ++FE  +  + FP  + Y TL++G
Sbjct: 298 NGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG 334



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 3/172 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  +R+   +   YN+++       R    + +++ M+     P  D +++LI G  K 
Sbjct: 279 DDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKS 338

Query: 90  SRLQD-TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            R++D T  FR +M   G + D   Y  LI       + D A ++F++M    V P+  T
Sbjct: 339 KRVEDGTELFR-EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 397

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           Y  LL+     G+L+    +   M  +   LD + Y  +I     K  + DD
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC-KAGKVDD 448



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 61/154 (39%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N ++ +   + +F     ++DDM+   + P    ++SLI G     RL       
Sbjct: 254 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMF 313

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + M +    PD+  YN LI    K K  +    +F EM    +  +  TY  L+      
Sbjct: 314 EFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 373

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           G  D    + + M + G   D   Y+ L+    N
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 407



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 64/161 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E + R    +   Y T++  L         + V+  M+ DGV P    +  L+ G     
Sbjct: 350 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L+      D M+ +    D+ +Y  +I    K    D    +F  +    VKPN  TY 
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 469

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +++   +   L   YA+++ M   G   D   Y  LI AH
Sbjct: 470 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 4/161 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   Y+++++ L S  R+     +  DM+   + P    F++LI   +K 
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            +  +     D M      PD+  YN LI+  G C +   D+A ++FE M   +  P+  
Sbjct: 269 GKFVEAEKLHDDMIKRSIDPDIFTYNSLIN--GFCMHDRLDKAKQMFEFMVSKDCFPDLD 326

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           TY  L+     + +++    + R+M+  G   D   Y  LI
Sbjct: 327 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 132/337 (39%), Gaps = 21/337 (6%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           L+  ++ H+K+             A  +   +R    N   Y  VV  L  +    L  +
Sbjct: 121 LIHGLFLHNKASEAV---------ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 171

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC 121
           + + M    ++    +F+++I    K   + D      +M+  G  P+V  Y+ LIS +C
Sbjct: 172 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 231

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
              + SD A ++  +M + ++ PN  T+  L++A    G+      +  DM       D 
Sbjct: 232 SYGRWSD-ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 290

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
           F Y  LI      +    D A ++ E +     +  ++T     +        E+   L 
Sbjct: 291 FTYNSLINGFC--MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL- 347

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNI 299
             E  HR  G +   +T Y           D    + + + +  D   PD+  Y ++ + 
Sbjct: 348 FREMSHR--GLVGDTVT-YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            C  ++G ++   +VF+    SE      +Y T++EG
Sbjct: 405 LC--NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439


>gi|115481316|ref|NP_001064251.1| Os10g0181200 [Oryza sativa Japonica Group]
 gi|113638860|dbj|BAF26165.1| Os10g0181200, partial [Oryza sativa Japonica Group]
          Length = 1021

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 419 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ 478

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKG
Sbjct: 479 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKG 533



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P ++ +N L+SVC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +
Sbjct: 391 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 450

Query: 169 VRDMTAAGAGLDKFCYAGLI 188
             +M +AG   +   Y+ LI
Sbjct: 451 FHEMVSAGIEPNVNTYSALI 470



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  + +   GAL     +  AG +         +   Y T++++     +   + +
Sbjct: 398 MLLSVCANSQDFDGALQVMVLLKEAGLKP--------DCKLYTTLISTCAKCGKVDAMFE 449

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 450 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 509

Query: 123 KCKNSDQAIRIFEEMK--------KYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM            + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 510 ESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 569

Query: 172 MTAAG 176
               G
Sbjct: 570 YNIKG 574



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 50  SLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFL 108
           SLT    F L   +Y+DM   GVQP  ++F S +V     +R  D  F      +A G+ 
Sbjct: 587 SLTGDLGFAL--KIYEDMNKIGVQPD-EMFLSALVDVAGHARRADAAFEIMKDARAKGYQ 643

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
                Y+ L+  C   K+  +A+++FEE+K  ++ P       L+ A     Q+   + +
Sbjct: 644 VGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEV 703

Query: 169 VRDMTAAGAGLDKFCYAGLITA 190
           + +M   G   +   Y+ L  A
Sbjct: 704 LSEMKRLGVCPNMITYSVLFVA 725



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   +  C    +   A++I+E+M K  V+P+      L++    A + D  + I++D 
Sbjct: 578 VYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDA 637

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMG 231
            A G  +    Y+ L+ A  N    A D   K ++L E+ K    + T S  NA    + 
Sbjct: 638 RAKGYQVGTIAYSSLMGACCN----AKDW-KKALQLFEEIKSIKLMPTVSMMNALITALC 692

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
              + L +      + +R G    ++T Y V F AC    + Q    L E LK D
Sbjct: 693 DGDQVLKSFEVLSEM-KRLGVCPNMIT-YSVLFVACERNAEAQLGLDLFEQLKID 745



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/113 (18%), Positives = 52/113 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++++ +  + + +     +++++    + PT  + ++LI     G ++  +F    +MK
Sbjct: 649 YSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMK 708

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             G  P++  Y+ L   C +   +   + +FE++K   +  N     CL   C
Sbjct: 709 RLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLC 761


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 35/183 (19%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-----------------T 86
           YNTV+T+L  + +   +RD+   M   G+ P R+ ++ L+ G                 T
Sbjct: 249 YNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMT 308

Query: 87  MKG------------------SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
            KG                   ++ +    RD+M++   +PDV  YN LI  C + + SD
Sbjct: 309 GKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSD 368

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            A ++ EEMK   VK NG T+  ++      G++D    ++  M  +G   D F Y  +I
Sbjct: 369 AAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMI 428

Query: 189 TAH 191
             +
Sbjct: 429 NGY 431



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 3/158 (1%)

Query: 34  RRNYANNASEYNTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           R  +  N    NT++ +L    S       R+V+ D +  GVQP  + F+ LI G    +
Sbjct: 166 RLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDN 225

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             ++     +QM   G  PD   YN +++   K     Q   +  +MK   + PN  TY 
Sbjct: 226 NTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYN 285

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L++       L     ++  MT  G   D + Y  ++
Sbjct: 286 ILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMV 323



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M  +GF PD   YN +I+   K     +A ++ +EM +  +K +  T   LL+      
Sbjct: 411 KMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEK 470

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           QLD  Y +       G  LD+  Y  LI  +       D+ A + ++L E+ K    V T
Sbjct: 471 QLDDAYTLTMKARKRGYILDEVTYGTLIMGYFK-----DEQADRALKLWEEMKETGIVAT 525



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/189 (17%), Positives = 81/189 (42%), Gaps = 5/189 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L    +     D  ++++  G+ P     + +I G      ++  F F ++M 
Sbjct: 529 YNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMV 588

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            +   PD+   N L+   G C+    ++ + +F          +  TY  ++++     +
Sbjct: 589 EHSLKPDIFTCNILLR--GLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERR 646

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           L+  + ++ +M       D++ Y  ++T  T K  R ++     ++  E+ +   + +TS
Sbjct: 647 LEDAFDLMTEMEGKNLEPDRYTYNAIVTGLT-KAGRTEEAEKLALKFAEKGQQVKTQDTS 705

Query: 222 GNNAENEMM 230
                ++MM
Sbjct: 706 PELGTSDMM 714



 Score = 38.1 bits (87), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 29/161 (18%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           ++ +   YNT++       +      + D+M   G++      ++L+       +L D +
Sbjct: 417 FSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAY 476

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               + +  G++ D   Y  LI    K + +D+A++++EEMK+  +     TY  ++   
Sbjct: 477 TLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGL 536

Query: 157 AAAGQLDPVY---------AIVRDMTAAGAGLDKFCYAGLI 188
             +G+ D             +V D + +   +  +C+ G +
Sbjct: 537 CLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAV 577


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+  L+        + + + M+  G  P    F++LIV     +RL++      ++ 
Sbjct: 340 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELT 399

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  +N LI+   K  +    IR+FEEMK     P+  TY  L++   + G+L 
Sbjct: 400 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLG 459

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
               ++ +M + G       Y  +I A   K+
Sbjct: 460 NALDLLNEMESNGCPRSTVTYNTIIDALCKKM 491



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           LG R F      EE        +   YN ++  L S  +     D+ ++M  +G   +  
Sbjct: 425 LGIRLF------EEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            ++++I    K  R+++     DQM A G       +N LI    K K  D A  + E+M
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQM 538

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            K  ++PN  TY  +L      G +     I+  MTA G  +D   Y  LI
Sbjct: 539 VKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLI 589



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 20/223 (8%)

Query: 1   MRLLQSIYRHHKSVG------------GALGRRFFVTSA--GAEEYARRNYANNASEYNT 46
           ++LL+S+Y      G             AL R   V +A    EE +    A + + + T
Sbjct: 178 LKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTT 237

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++     +        V   MM  G  PT    + LI G  K  R++D   +  Q  A+G
Sbjct: 238 LMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADG 297

Query: 107 FLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F PD   YN  +   G C+N     A+++ + M +    P+  TY  ++N  +  G+LD 
Sbjct: 298 FEPDQVTYNTFVH--GLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKI 205
              IV  M   G   D   +  LI A +  N++  A D A ++
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAREL 398



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 60/133 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +L  + R     +V+D M   G+  +   F++LI G  K  R+ D     +QM 
Sbjct: 480 YNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 539

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+   YN +++   K  N  +A  I E M     + +  TY  L+N    AG+  
Sbjct: 540 KEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQ 599

Query: 164 PVYAIVRDMTAAG 176
               ++R M   G
Sbjct: 600 VALKLLRGMRIKG 612



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 66/147 (44%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           + +A  +NT++  L   +R     ++ + M+ +G+QP    ++S++    K   ++    
Sbjct: 509 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAAD 568

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             + M ANGF  DV  Y  LI+   K   +  A+++   M+   ++P  + Y  ++ +  
Sbjct: 569 ILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLF 628

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               L     + R+MT  G   D   Y
Sbjct: 629 RRNNLRDALNLFREMTEVGEPPDALTY 655



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/390 (20%), Positives = 143/390 (36%), Gaps = 59/390 (15%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRF-----FLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           E  R  +   A    + V S    RRF      +L  + +D    GVQ    +F+ L+  
Sbjct: 114 EMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTF--GVQADTVVFNHLLNV 171

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
            ++GS+L+      ++M   G  PDV   N LI    +      A+ + EEM  + V P+
Sbjct: 172 LVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPD 231

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             T+  L+      G ++    +   M  AG          LI  +  K+ R +D     
Sbjct: 232 ETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYC-KMGRVEDA---- 286

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                                   +G  ++E+ +           GF    +T Y+   H
Sbjct: 287 ------------------------LGYIQQEIAD-----------GFEPDQVT-YNTFVH 310

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
              +   V     +++++ ++   PDV+     I C   +G++D    +    +     P
Sbjct: 311 GLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP 370

Query: 326 PAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
               + TL+   +      + + LA++  V        LSP + +  +L+ A  K G   
Sbjct: 371 DTTTFNTLIVALSSQNRLEEALDLARELTVK------GLSPDVYTFNILINALCKVGDPH 424

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKD 414
               +++ M++   TP     E  YN L D
Sbjct: 425 LGIRLFEEMKSSGCTPD----EVTYNILID 450



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 115/299 (38%), Gaps = 18/299 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT V  L           V D M+ +G  P    ++++I    K   L +     +QM 
Sbjct: 305 YNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD   +N LI         ++A+ +  E+    + P+  T+  L+NA    G  D
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVG--D 422

Query: 164 PVYAI--VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           P   I    +M ++G   D+  Y  LI  H   + +  +    + E+  +S G      +
Sbjct: 423 PHLGIRLFEEMKSSGCTPDEVTYNILID-HLCSMGKLGNALDLLNEM--ESNGCPRSTVT 479

Query: 222 GN---NAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
            N   +A  + M + + EE+++   A+ +       SR    ++       + K +    
Sbjct: 480 YNTIIDALCKKMRIEEAEEVFDQMDAQGI-------SRSAVTFNTLIDGLCKAKRIDDAT 532

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            L+E + K+   P+       +  Y   G+I     + E    +        Y TL+ G
Sbjct: 533 ELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLING 591



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 1/148 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  +     N   YN+++T    Q       D+ + M  +G +     + +LI G  K 
Sbjct: 536 EQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKA 595

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R Q        M+  G  P    YN +I    +  N   A+ +F EM +    P+  TY
Sbjct: 596 GRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTY 655

Query: 150 -VCLLNACAAAGQLDPVYAIVRDMTAAG 176
            +   + C   G +   +  + +M   G
Sbjct: 656 KIVFRSLCRGGGPIKEAFDFLVEMVNKG 683


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 20/295 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++     I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L TA EY  R      RL  V + A 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GSCKEG--DLETALEYRKRMIKENIRLDDVAYTAL 352

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+    +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 147/369 (39%), Gaps = 27/369 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L ++ RF +   ++D M   G       ++ +I G      ++      
Sbjct: 371 NTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVF 430

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M  +G  P V  YN LI    K    + A R    MK+   +P+ +TY  L++     
Sbjct: 431 NKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKG 490

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+LD   +   +M   G   +++ Y  +I  +  +     D A  + E +E++   +S+E
Sbjct: 491 GKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKE--GKIDVALSLFERMEENGCSASIE 548

Query: 220 T-----SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           T     SG +  N     S+ E +     E      G     +T   +    C       
Sbjct: 549 TYNAIISGLSKGNRF---SEAEKFCAKMTEQ-----GLQPNTITYTSLINGLCKNTATNL 600

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A +   EM KK+   P+ +     I      G +D   ++ E+  C    P  + Y+TLV
Sbjct: 601 AFKIFHEMEKKNCL-PNAHTYTSLIYGLCQEGKVDAAERLTENG-CE---PTIDTYSTLV 655

Query: 335 EG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393
            G    G + +  QL +    NM  +   LSP M     L+ A  KS     A  I++LM
Sbjct: 656 SGLCREGRSNEASQLVE----NMKEKG--LSPSMEIYCSLLVAHCKSLKVDCALEIFNLM 709

Query: 394 QARKITPSL 402
             +   P L
Sbjct: 710 AVKGFQPHL 718



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 5/159 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++  L         ++VY  +   GV+P+   F+++I    K  ++Q+     +++ 
Sbjct: 165 FNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIF 224

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                PD   Y  LI   G C+N   D+A  +F+ M K    PN  TY  L+N     G+
Sbjct: 225 QFDLCPDAFTYTSLI--LGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGR 282

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           +     ++ +MT  G     + Y   I++  + I R DD
Sbjct: 283 IGEAMDMLEEMTEKGIEPTVYTYTVPISSLCD-IGRVDD 320



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 60/149 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y +++      R+     +V+D M+ DG  P    + +LI G     R+ +     
Sbjct: 231 DAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDML 290

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G  P V  Y   IS        D AI +   M K    P+ QTY  +++    A
Sbjct: 291 EEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRA 350

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+++    +   M   G   +   Y  LI
Sbjct: 351 GKMELAIGMYHKMLKEGLVPNTVTYNALI 379



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 11/205 (5%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           G + G RF        +   +    N   Y +++  L       L   ++ +M      P
Sbjct: 556 GLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLP 615

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIR 132
               + SLI G  +  ++       +++  NG  P +  Y+ L+S  G C+   S++A +
Sbjct: 616 NAHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVS--GLCREGRSNEASQ 669

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           + E MK+  + P+ + Y  LL A   + ++D    I   M   G     F Y  LI A  
Sbjct: 670 LVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALC 729

Query: 193 NKIPRADDTATKIIELVEQSKGWSS 217
             + RA++       L++  K W+S
Sbjct: 730 G-VSRAEEALNIFQSLLK--KQWNS 751



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 57/136 (41%)

Query: 28  GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
            AE             Y+T+V+ L  + R      + ++M   G+ P+ +++ SL+V   
Sbjct: 635 AAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHC 694

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           K  ++       + M   GF P + +Y  LI        +++A+ IF+ + K +   +  
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI 754

Query: 148 TYVCLLNACAAAGQLD 163
            +  L++     G  D
Sbjct: 755 VWTVLVDGLLQEGDSD 770


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 75/159 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R +  +   YNT+++     ++        D+M+  G++P    +  LI G +  
Sbjct: 521 KEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNM 580

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++++   F    K NG +PDV  Y+ +I  C K + +++  ++F+EM    ++PN   Y
Sbjct: 581 NKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVY 640

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+ A   +G+L     +  DM   G   +   Y  LI
Sbjct: 641 NHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 679



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 162/409 (39%), Gaps = 48/409 (11%)

Query: 40  NASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           N   YNTV+  L    R+   F+ ++    M+  GV+PT   +  L+ G  K  R+ D +
Sbjct: 286 NVVTYNTVIDGLGMSGRYDEAFMFKE---KMVERGVEPTLITYSILVKGLTKAKRIGDAY 342

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +M   GF P+V VYN LI    +  + ++AI I + M    +     TY  L+   
Sbjct: 343 CVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 402

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAG---LITAH---------------TNKIPRA 198
             +GQ D    ++++M + G  +++  +     L+ +H                N  P  
Sbjct: 403 CKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGG 462

Query: 199 DDTATKIIELVEQSKGWSSVE-------------TSGNNAENEMMGVSKEELYNLPTAEY 245
               T I  L +  K   +VE             T  +NA    +  + +        + 
Sbjct: 463 GLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKE 522

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
           +  RG  + R+   Y+     C   K + +A   + EM+KK  K PD Y     IR  L+
Sbjct: 523 ILGRGFVMDRV--SYNTLISGCCGNKKLDEAFMFMDEMVKKGLK-PDNYTYSILIRGLLN 579

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG-YTPKGMQLAQDTLVNMNSRNIFL 363
              ++   + + D   +   P    Y+ +++G      T +G +L  + + N    N  +
Sbjct: 580 MNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVV 639

Query: 364 SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
                    L+ A  +SG  + A  + + M+ + I+P+     +   G+
Sbjct: 640 YNH------LIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 682



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + ++D+MM + +QP   +++ LI    +  RL      R+ MK  G  P+ A Y  LI  
Sbjct: 622 QKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 681

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  ++A  + EEM+   ++PN   Y  L++     GQ+  V  ++R+M +     +
Sbjct: 682 MSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 741

Query: 181 KFCYAGLITAH 191
           K  Y  +I  +
Sbjct: 742 KITYTVMIGGY 752



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 64/159 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E    N   N   YN ++ +     R  +  ++ +DM   G+ P    + SLI G    
Sbjct: 626 DEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSII 685

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           SR+++     ++M+  G  P+V  Y  LI   GK     +   +  EM    V PN  TY
Sbjct: 686 SRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY 745

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             ++   A  G +     ++ +M   G   D   Y   I
Sbjct: 746 TVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFI 784



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 1/144 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++TSL     F    + +  ++  GV P   LF + I    KG ++++      +M+ 
Sbjct: 222 NILLTSLVRATEFQKCCEAFH-VVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEE 280

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G +P+V  YN +I   G     D+A    E+M +  V+P   TY  L+     A ++  
Sbjct: 281 AGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGD 340

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
            Y ++++MT  G   +   Y  LI
Sbjct: 341 AYCVLKEMTEKGFPPNVIVYNNLI 364



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 69/162 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  ++    +   Y+ ++  L +  +       + D   +G+ P    +  +I G  K 
Sbjct: 556 DEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKA 615

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++     D+M +N   P+  VYN+LI    +      A+ + E+MK   + PN  TY
Sbjct: 616 ERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATY 675

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+   +   +++    ++ +M   G   + F Y  LI  +
Sbjct: 676 TSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGY 717



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++  M   GV P    ++++I G     R  + F F+++M   G  P +  Y+ L+   
Sbjct: 273 ELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGL 332

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K K    A  + +EM +    PN   Y  L+++   AG L+    I   M + G  L  
Sbjct: 333 TKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTS 392

Query: 182 FCYAGLITAH 191
             Y  LI  +
Sbjct: 393 STYNTLIKGY 402



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 66/158 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   RN +       T+++ L    +     +++   +  G        ++L+ G  +  
Sbjct: 452 EMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAG 511

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L++ F  + ++   GF+ D   YN LIS C   K  D+A    +EM K  +KP+  TY 
Sbjct: 512 KLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYS 571

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+       +++       D    G   D + Y+ +I
Sbjct: 572 ILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMI 609



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ---DTFFFRDQMKANGFLPDVAVY 114
           +L  DV+  +   G+ P++   + L+   ++ +  Q   + F     +   G  PDV ++
Sbjct: 200 YLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAF----HVVCKGVSPDVYLF 255

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
              I+   K    ++AI +F +M++  V PN  TY  +++    +G+ D  +     M  
Sbjct: 256 TTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVE 315

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
            G       Y+ L+   T K  R  D    + E+ E+
Sbjct: 316 RGVEPTLITYSILVKGLT-KAKRIGDAYCVLKEMTEK 351


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 24/297 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  + A  +FEEM    + PNG 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMEDANELFEEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++     I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA    +R   +   + +  VA+ 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GSCKEG--DLETAXXYRKR--MIKENIRLDDVAYT 350

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           A     C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+    +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLLKEMQRDG 411


>gi|242063818|ref|XP_002453198.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
 gi|241933029|gb|EES06174.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
          Length = 393

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 7/197 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN ++ +  +      +  V+  M  DGV P    +++LI G  +   ++    F 
Sbjct: 199 DAHLYNALMKAHVAADDPGAVLRVFRQMKDDGVDPDLVTYNTLIFGLARAGMVRKARAFI 258

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQ--AIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             M A G LPDV  Y  L++  G C   D   A+++ EEM+    +PN +TY  LL    
Sbjct: 259 HAMAAEGHLPDVITYTSLMN--GMCVQGDALGALKLLEEMEAEGCQPNERTYNTLLMGLC 316

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
              +LD    + + M  AG  LD   YA  + A       AD  A ++ +   Q+K ++ 
Sbjct: 317 KNKKLDKAVEVYKSMVGAGMKLDSPAYASYVRALCRSGSVAD--AYEVFDYAIQTKSFTE 374

Query: 218 VETSGNNAENEMMGVSK 234
           V T+ +  EN +  + K
Sbjct: 375 V-TAYSELENSLKWLRK 390



 Score = 38.1 bits (87), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++ +G   D  +YN L+       +    +R+F +MK   V P+  TY  L+   A AG 
Sbjct: 191 LRDHGVRADAHLYNALMKAHVAADDPGAVLRVFRQMKDDGVDPDLVTYNTLIFGLARAGM 250

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +    A +  M A G   D   Y  L+
Sbjct: 251 VRKARAFIHAMAAEGHLPDVITYTSLM 277


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 6/299 (2%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A  AS YN+++ +            VY  M   G++P    F+ L+    K  R+   + 
Sbjct: 86  ALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWK 145

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             ++M+     P+V  Y+ LI    KC   ++A+++F +MK    +PN  TY  +++   
Sbjct: 146 LFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLG 205

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            +G +D  + +  +MT+ G    +  Y  LI     +  RAD  A    E++ +      
Sbjct: 206 KSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHG-LGRSGRADAAAKLFREMLSKGLQPDH 264

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
           V  +       + G + E       A  V   G  L   + +Y+V      + K +    
Sbjct: 265 VTFTSLVYGLGVAGRASEARRIFQEARDV---GCALD--VNLYNVLIDTLCKSKRLDEAW 319

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            +   L++D   PDVY     +     SG I +   +  D   +   P   +Y TL++G
Sbjct: 320 EIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDG 378



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 16/178 (8%)

Query: 27  AGAEEYARRNY--------ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           AG    ARR +        A + + YN ++ +L   +R     +++ ++  DG+ P    
Sbjct: 277 AGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYT 336

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           F++L+ G  K  R+ D F     MK  G  PDV VYN LI    K    ++A ++  EM+
Sbjct: 337 FNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQ 396

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG--------LDKFCYAGLI 188
               +P+  TY  L++     G+++    +  +++A G          L+  C AG +
Sbjct: 397 SLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTVTYNTILNGLCMAGRV 454



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 127/313 (40%), Gaps = 19/313 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +N + N   Y+ ++ ++           V+ DM   G +P    + S+I G  K 
Sbjct: 148 EEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKS 207

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   FF  ++M + G +    VYN LI   G+   +D A ++F EM    ++P+  T+
Sbjct: 208 GHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTF 267

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+     AG+      I ++    G  LD   Y  LI           DT  K   L 
Sbjct: 268 TSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLI-----------DTLCKSKRLD 316

Query: 210 EQSKGWSSVETSGNNAE----NEMM-GVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVA 263
           E  + +  +E  G   +    N +M G+ K   +++        +R G  +  +TVY+  
Sbjct: 317 EAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG-CTPDVTVYNTL 375

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
                +   V+    LL  ++     PDV      I      G I++  ++FE+ I ++ 
Sbjct: 376 IDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEE-ISAKG 434

Query: 324 FPPAELYATLVEG 336
           F     Y T++ G
Sbjct: 435 FANTVTYNTILNG 447


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ ++   +R + ++ +Y +M+ +G  P+   + SL+    +    +D      +MK
Sbjct: 322 YNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMK 381

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQL 162
             G   +V +YN L+++C      ++A+ IF++MK      P+  T+  ++   +  G++
Sbjct: 382 EKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKV 441

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
                ++ DM  AG   + F    LI  +  K  R DD      +L+E
Sbjct: 442 SEAEEMLNDMVEAGFDPNIFVLTSLIQCY-GKAKRVDDVVRTFNQLIE 488



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY++M   G++P   +++ L+    +  R         +M  NGF P  A Y  L+   
Sbjct: 305 NVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAY 364

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLD 180
           G+ +  + A+ +++EMK+  ++ N   Y  LL  CA  G ++    I +DM ++G    D
Sbjct: 365 GRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPD 424

Query: 181 KFCYAGLITAHT--NKIPRADDTATKIIE 207
            + ++ +IT ++   K+  A++    ++E
Sbjct: 425 SWTFSSMITIYSCGGKVSEAEEMLNDMVE 453



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 24/296 (8%)

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           F   D+ +   +  D A ++ +I + G   N D  + ++EEMK   +KPN   Y CLL+A
Sbjct: 269 FSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNCLLDA 328

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
              A +   +  I ++M   G       YA L+ A+  +    +D      E+ E+    
Sbjct: 329 MGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAY-GRARYGEDALIVYKEMKEKGLQL 387

Query: 216 SSVETSGNNAENEMMGVSKE--ELY-NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
           + +  +   A    +G   E  E++ ++ ++          S ++T+Y     +C     
Sbjct: 388 NVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIY-----SCG--GK 440

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           V   E +L  + +    P+++++   I+CY  +  +D+  + F   I     P       
Sbjct: 441 VSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDDRFCGC 500

Query: 333 LVEGAMFGYTPKGMQLAQ--DTLVNMNSRNIFLSPRMGSDL-LLVAAGEKSGGYTT 385
           L+   +   TPKG +L +  D +V  N       P++G  + LL+   +K G + T
Sbjct: 501 LLN--VITQTPKG-ELGKLIDCVVRAN-------PKLGFVVELLLGEQDKEGNFRT 546



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-LQDTFFFRDQMKAN 105
           V+ ++++ +   L    + DM+    Q    +F+++ +   +  R ++      ++M   
Sbjct: 152 VLNNMSNSQTALLALRYFQDMLKSSKQ---TIFYNVTLKVFRKCRDMEGAEKLFEEMINR 208

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G  PD   ++ +IS    C    +A+  FE+M  ++  P+  TY  +++A   AG +D  
Sbjct: 209 GVKPDNVTFSTIISCARLCSLPSKAVEWFEKMPSFDCNPDDVTYSTMIDAYGRAGNVDMA 268

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAH 191
           +++          +D   ++ +I  H
Sbjct: 269 FSLYDRARTENWRIDPATFSTMIKIH 294



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 62  DVYDDMMLDGV-QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +++ DM   G   P    F S+I     G ++ +     + M   GF P++ V   LI  
Sbjct: 410 EIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQC 469

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            GK K  D  +R F ++ +  + P+ +   CLLN
Sbjct: 470 YGKAKRVDDVVRTFNQLIELGLTPDDRFCGCLLN 503


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +L  + R    RD+  DM   G+ P R+ ++ L+ G  K   L++     + M 
Sbjct: 246 YNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMT 305

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            N  LPDV  YN LI+  G C     ++A ++ +EM+  ++ P+  +Y  L+N C    +
Sbjct: 306 QNNLLPDVWTYNMLIN--GLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSK 363

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
           +   + ++ +M+  G   +   +  ++  +    K+  A +T TK+ E
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEE 411



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++++  G+ P    +++++ G  +   ++  F F ++M  N F PDV   N L+   G C
Sbjct: 547 NELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLR--GLC 604

Query: 125 KNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                ++A+++F          +  TY  L+ +    G+LD  + ++ +M     G D +
Sbjct: 605 MEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHY 664

Query: 183 CYAGLITAHTN--KIPRADDTATKIIE 207
            Y  +ITA T+  +I  A++  +K++E
Sbjct: 665 TYNAIITALTDSGRIREAEEFMSKMLE 691



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 112/304 (36%), Gaps = 32/304 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++       +      + ++M   GV+P     + ++    K  ++ D      +M+
Sbjct: 351 YNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME 410

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +GF PD   YN LI+   K  N  +A R  +EM +  +K +  T   +L       +L+
Sbjct: 411 ESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE 470

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y ++      G  +D+  Y  LI  +       D    + ++L ++ K          
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYF-----KDGNVDRALKLWDEMK---------- 515

Query: 224 NAENEMMGVSKEELYNL---------PTAEYVHRRGGFLSRLL----TVYHVAFHACAEL 270
             E E+  +     YN           T + + +    L   L    T Y+   H     
Sbjct: 516 --EKEI--IPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCRE 571

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
            DV+        + ++   PDV+     +R     G ++   K+F  ++   K      Y
Sbjct: 572 GDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTY 631

Query: 331 ATLV 334
            TL+
Sbjct: 632 NTLI 635



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 5/183 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R Y  +   Y T++              ++D+M    + P+   ++ +I G  +  + +
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVC 151
                 +++  +G LPD   YN ++   G C+  D  +A +   +M +   KP+  T   
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILH--GYCREGDVEKAFQFHNKMVENSFKPDVFTCNI 598

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           LL      G L+    +     + G  +D   Y  LIT+   K  R DD    + E+ E+
Sbjct: 599 LLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLC-KEGRLDDAFNLLSEMEEK 657

Query: 212 SKG 214
             G
Sbjct: 658 ELG 660



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 5/154 (3%)

Query: 45  NTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           NT++ SL    S       R+ ++D +  G+ P  + F+ +I G    ++ +D   F + 
Sbjct: 174 NTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNV 233

Query: 102 MKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           M      PD   YN ++ ++C K +  D A  +  +MK   + PN  TY  L+      G
Sbjct: 234 MGKYNCSPDNVTYNTILDALCKKGRLGD-ARDLLMDMKSRGLLPNRNTYNILVYGYCKMG 292

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            L     ++  MT      D + Y  LI    N+
Sbjct: 293 WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNE 326


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    R    +D+  +M  +GV PT + F++LI    +  +L+  F    +M+
Sbjct: 413 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 472

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+V  Y  +++   K     +A+ I ++M   +V PN Q Y  +++A    G  D
Sbjct: 473 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 532

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             + +V  M + G       Y  LI    N+
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQ 563



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN V+  +    R     +V+D+M    V P    ++++I G +KG  L+  F  R
Sbjct: 199 NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 258

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P+   YN L+S   +     +   + +EM   ++ P+G TY  L +  +  
Sbjct: 259 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 318

Query: 160 G 160
           G
Sbjct: 319 G 319



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++  L    +  +  +V   ++  G+ PTR ++++LI G  +   L+  F    QMK+  
Sbjct: 346 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 405

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             PD   YN LI+   K +    A  +  EM+   V P  +T+  L++A    GQL+  +
Sbjct: 406 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 465

Query: 167 AIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
            ++ +M   G   +   Y  ++ A     KIP A
Sbjct: 466 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 499



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 8/177 (4%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G L + F V S    E        N   Y ++V +     +      + DDM    V P 
Sbjct: 459 GQLEKCFIVLS----EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRI 133
             +++++I   ++       F   ++MK+NG  P +  YN LI   G C  S   +A  I
Sbjct: 515 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEI 572

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +  + + P+  +Y  L++AC   G +D    + + M   G       Y  LI+ 
Sbjct: 573 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 629



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)

Query: 40  NASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NA  YN ++ +        + F L+    + M  +G+ P+   ++ LI G    S++ + 
Sbjct: 514 NAQVYNAIIDAYVEHGPNDQAFILV----EKMKSNGISPSIVTYNLLIKGLCNQSQISEA 569

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + +  +  +PD   YN LIS C    N D+A+ + + M KY +K   +TY  L++ 
Sbjct: 570 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 629

Query: 156 CAAAGQLDPVYAIVRDM 172
              AG+L+ +  + + M
Sbjct: 630 LGGAGRLNEMEYLYQKM 646



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 67  MMLDGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           M  DG  P     ++ +I G  +  R  D     D+M     LP+   YN +I    K  
Sbjct: 190 MGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGG 249

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           + +   R+ ++M  + +KPN  TY  LL+    AG++    A++ +M +     D F Y+
Sbjct: 250 DLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYS 309

Query: 186 GL 187
            L
Sbjct: 310 IL 311



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 6/165 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E   R    N   YNT++            F LRD    M+  G++P    ++ L+ G 
Sbjct: 224 DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRD---QMVCHGLKPNAITYNVLLSGL 280

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            +  R+ +T    D+M +   +PD   Y+ L     +  +S   + +F +  K  V    
Sbjct: 281 CRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGD 340

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            T   LLN     G++     +++ +  AG    +  Y  LI  +
Sbjct: 341 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY 385



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT++++   +       D+   M   G++ T   +H LI G     RL +  +  
Sbjct: 584 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 643

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            +M  N  +P  A++N ++    K  N  +A  + +EM
Sbjct: 644 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 681


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   A     YNT+V++            V + M   G +P    ++ L +G  +  ++ 
Sbjct: 271 RDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVD 330

Query: 94  DTFFFRDQMKANGF-LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           + F  +D+M+  G  LPDV  YN L+  C K + S  A+R+ EEM+   VKP   T+  +
Sbjct: 331 EAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIV 390

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           + +    G+L+     +  +   G   D   Y  LI A+
Sbjct: 391 VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   R    + S YNT++  L    R     D  ++ +  G+ P    ++ +I    K 
Sbjct: 513 DQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKE 572

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L++ F F ++M  N F PDV   N L++  G C +   D+A+++FE   +   K +  
Sbjct: 573 GDLENAFRFHNKMVENSFKPDVVTCNTLMN--GLCLHGKLDKALKLFESWVEKGKKVDVI 630

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           TY  L+ +    G +D       DM   G   D F Y  +++A
Sbjct: 631 TYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSA 673



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 66/157 (42%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R +  +   Y TV+ +   +        ++D M+   + P+   +++LI G  +  RL+
Sbjct: 482 QRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLK 541

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     ++    G +PD   YN +I    K  + + A R   +M +   KP+  T   L+
Sbjct: 542 EAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLM 601

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           N     G+LD    +       G  +D   Y  LI +
Sbjct: 602 NGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQS 638



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    +++L+    +   L +      +MK +G  P    YN L+S   +     QA
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQA 297

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLIT 189
            ++ E M  Y  +P+ +TY  L      AG++D  + +  +M   G  L D   Y  L+ 
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVD 357

Query: 190 A 190
           A
Sbjct: 358 A 358



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 126/300 (42%), Gaps = 20/300 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM-KGSRLQDTFFFRDQM 102
           YNT+V +    R       + ++M   GV+PT  + H+++V ++ K  +L++     +++
Sbjct: 352 YNTLVDACFKWRCSSDALRLLEEMRDKGVKPTL-VTHNIVVKSLCKEGKLEEALGKLEKI 410

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              G  PDV  YN LI    K  N  +A  + +EM    +K +  T   +L       + 
Sbjct: 411 AEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRY 470

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +    ++      G   D+  Y  ++ A+  +     + A ++ + + + K   S+ T  
Sbjct: 471 EDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEY--NPEPALRLWDQMIERKLIPSISTYN 528

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL----TVYHVAFHACAELKDVQAMET 278
                 + G+ + E       E + +   F+ + L    T Y++  HA  +  D++    
Sbjct: 529 ----TLIKGLCRMERLK----EAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFR 580

Query: 279 LLEMLKKDRKSPDVYI--VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               + ++   PDV     + N  C LH G +D   K+FE ++   K      Y TL++ 
Sbjct: 581 FHNKMVENSFKPDVVTCNTLMNGLC-LH-GKLDKALKLFESWVEKGKKVDVITYNTLIQS 638



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 47/115 (40%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DV+  ++   + P    F+ L+        L D       M+  G  PD   YN L++  
Sbjct: 194 DVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAH 253

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            +     +A  +   MK+  + P   TY  L++A A  G +     +V  MTA G
Sbjct: 254 CRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG 308



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 69/165 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ A    A +   YNT++ +            + D+M+  G++      ++++    K 
Sbjct: 408 EKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKM 467

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +D           GF+PD   Y  +++   K  N + A+R++++M + ++ P+  TY
Sbjct: 468 KRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTY 527

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+       +L      + +    G   D+  Y  +I A+  +
Sbjct: 528 NTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKE 572


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 198 YSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQML 257

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  B  QA  +  EM     KP+  TY  L++ C   G 
Sbjct: 258 SQSLLPDLITYNTLIY--GLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGD 315

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 316 LDTAFEHRKRMIQENIRLDDVAYTALISG 344



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 133/315 (42%), Gaps = 22/315 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E     Y  +   +N ++     +    + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 114 QEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRL 173

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK    D+A  +F+EM    + P G 
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLIN--GLCKEXKMDEANELFDEMLVXGLVPXGV 231

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T+  L++     G++D    I + M +     D   Y  LI      + +  B     + 
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG----LCKKGBLKQAHVL 287

Query: 208 LVEQS-KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
           + E S KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ A
Sbjct: 288 IXEMSLKGXKPDKITYTTLID---GCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYTA 340

Query: 267 -----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
                C E + V A + L EML    K PD       I  +   GD+  G K+ ++    
Sbjct: 341 LISGLCQEGRSVDAEKMLREMLSVGXK-PDTRTYTMIINEFCKKGDVWTGSKLLKEMQRD 399

Query: 322 EKFPPAELYATLVEG 336
              P    Y  L+ G
Sbjct: 400 GHVPSVVTYNVLMNG 414


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 129/310 (41%), Gaps = 19/310 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+ Y  +   YN ++ +L           V++DM      P  D +   I+  M G
Sbjct: 210 EEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVP--DAYTYTILIRMSG 267

Query: 90  SRLQDTFF--FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
              Q   F  F D+M + G   ++  YN +I   GK K  D+ I +  +M + + +PN  
Sbjct: 268 KTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQF 327

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY   L+  A  GQL  +  +   +      L+K  Y+ L+ +   K   A +       
Sbjct: 328 TYSLTLDILATEGQLHRLNEV---LDICDRYLNKSIYSYLVKSLC-KSGHASEAHNVFCR 383

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH---RRGGFLSRLLTVYHVAF 264
           +      W+S E+   +A   M+ V       L   + +H    +G  +   + +Y++ F
Sbjct: 384 M------WNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKG--IDTDIGMYNMVF 435

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
            A  +LK V  + TL + +K    +PD++     I  Y   G +D    +FE+   S   
Sbjct: 436 SALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCK 495

Query: 325 PPAELYATLV 334
           P    Y TL+
Sbjct: 496 PDVITYNTLI 505



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           +G +K      T F  D+MKA+G  PD+  YN +IS  G+    D+A  +FEEM+    K
Sbjct: 438 LGKLKQVSFISTLF--DKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCK 495

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           P+  TY  L+N     G LD  + + ++M   G   D F Y+ LI     +NK+  A
Sbjct: 496 PDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMA 552



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +  ++   ++   +   F   ++M   G+  D+  YN L+    K    DQA ++FE+MK
Sbjct: 189 YKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMK 248

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +    P+  TY  L+      GQ     +   +M + G  L+   Y  +I A
Sbjct: 249 QKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEA 300



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 52/125 (41%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M     +P    +++LI    K   L +      +M+  G+ PDV  Y+ LI   G
Sbjct: 485 LFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFG 544

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    D A  +F+EM      PN  TY  LL+     G+    +     M   G   D  
Sbjct: 545 KSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSI 604

Query: 183 CYAGL 187
            Y+ L
Sbjct: 605 TYSIL 609



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 19  GRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           GR   V  A    EE    +   +   YNT++  L           ++ +M   G  P  
Sbjct: 474 GRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDV 533

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             + +LI    K +++       D+M A G +P++  YN L+    +   + +A + +E 
Sbjct: 534 FTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYET 593

Query: 137 MKKYEVKPNGQTYVCL 152
           MK+  + P+  TY  L
Sbjct: 594 MKQQGLTPDSITYSIL 609


>gi|215694797|dbj|BAG89988.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 930

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 328 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ 387

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKG
Sbjct: 388 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKG 442



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P ++ +N L+SVC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +
Sbjct: 300 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 359

Query: 169 VRDMTAAGAGLDKFCYAGLI 188
             +M +AG   +   Y+ LI
Sbjct: 360 FHEMVSAGIEPNVNTYSALI 379



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  + +   GAL     +  AG +         +   Y T++++     +   + +
Sbjct: 307 MLLSVCANSQDFDGALQVMVLLKEAGLKP--------DCKLYTTLISTCAKCGKVDAMFE 358

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 359 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 418

Query: 123 KCKNSDQAIRIFEEMK--------KYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM            + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 419 ESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 478

Query: 172 MTAAG 176
               G
Sbjct: 479 YNIKG 483



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 19/198 (9%)

Query: 5   QSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVT-----------SLTS 53
           + I   H +VG  +        AG  + AR  Y     EYN   T           SLT 
Sbjct: 444 KPILPDHVTVGALMKT---CIQAGQADRAREVY-KMLQEYNIKGTPEVYTIALRSCSLTG 499

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFLPDVA 112
              F L   +Y+DM   GVQP  ++F S +V     +R  D  F      +A G+     
Sbjct: 500 DLGFAL--KIYEDMNKIGVQPD-EMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTI 556

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+ L+  C   K+  +A+++FEE+K  ++ P       L+ A     Q+   + ++ +M
Sbjct: 557 AYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEM 616

Query: 173 TAAGAGLDKFCYAGLITA 190
              G   +   Y+ L  A
Sbjct: 617 KRLGVCPNMITYSVLFVA 634



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   +  C    +   A++I+E+M K  V+P+      L++    A + D  + I++D 
Sbjct: 487 VYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDA 546

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMG 231
            A G  +    Y+ L+ A  N    A D   K ++L E+ K    + T S  NA    + 
Sbjct: 547 RAKGYQVGTIAYSSLMGACCN----AKDW-KKALQLFEEIKSIKLMPTVSMMNALITALC 601

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
              + L +      + +R G    ++T Y V F AC    + Q    L E LK D
Sbjct: 602 DGDQVLKSFEVLSEM-KRLGVCPNMIT-YSVLFVACERNAEAQLGLDLFEQLKID 654



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/122 (18%), Positives = 54/122 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + Y      Y++++ +  + + +     +++++    + PT  + ++LI     G ++  
Sbjct: 549 KGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLK 608

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           +F    +MK  G  P++  Y+ L   C +   +   + +FE++K   +  N     CL  
Sbjct: 609 SFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTG 668

Query: 155 AC 156
            C
Sbjct: 669 LC 670


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     + +D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + ++M    +KP+  TY  L+B C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDSAFEHRKRMIQENIRLDDVVYTALISG 361



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 22/315 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+    ++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A   F+EM    + PNG 
Sbjct: 191 GDLDEGFRLKSVMLASGVQPDVYTYSVLIN--GLCKESKMDDANEXFDEMLVKGLVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D    +
Sbjct: 249 TFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--RLLTVYHVA 263
                  KG    + +     B   G  KE   +L +A + HR+       RL  V + A
Sbjct: 309 -----SMKGLKPDKITYTTLIB---GCCKEG--DLDSA-FEHRKRMIQENIRLDDVVYTA 357

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
             +  C E + V A + L EML   R  PD       I  +   GD+  G K+ ++    
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLSV-RLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 416

Query: 322 EKFPPAELYATLVEG 336
              P    Y  L+ G
Sbjct: 417 GHAPSVVTYNVLMNG 431


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T++     +  F   + ++ +M   G +P    ++ LI G  K  R+++ +  R
Sbjct: 175 NVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELR 234

Query: 100 DQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M+A G  PD+  Y  L+   G+C     D A+ +F E+++  +  N  TY  +++  +
Sbjct: 235 DEMRAKGIFPDIYTYTSLLH--GECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLS 292

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             G+ +  + +  +MT AG   D   Y  L+++
Sbjct: 293 KEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSS 325



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M   G +P+V  Y  LI +  K  N  +A ++F+EMKK   +PN  TY  L++  +  G+
Sbjct: 167 MIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGR 226

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           +   Y +  +M A G   D + Y  L+  H   I    D A ++   V Q
Sbjct: 227 MKEAYELRDEMRAKGIFPDIYTYTSLL--HGECIFGKLDDAVELFNEVRQ 274



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 59/302 (19%), Positives = 127/302 (42%), Gaps = 13/302 (4%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G   D+ VY  +I+   K  N+ +A  +F+E+ +  +  N  TY  L++    A
Sbjct: 25  EEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKA 84

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+++    +V +M   G  +++  Y  LI  +  +     D A K ++++ + KG+ +  
Sbjct: 85  GEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKR--GLIDEAFK-VQVIMEKKGFENDI 141

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
            + N   + +  +++ E         + +  G +  +++   +    C E   V+A +  
Sbjct: 142 YTLNTIADGLRKLNQPEEAKRWLLTMIEK--GVVPNVVSYTTLIDIYCKEGNFVEAKKLF 199

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AM 338
            EM KK    P+       I  +   G +   +++ ++      FP    Y +L+ G  +
Sbjct: 200 QEM-KKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECI 258

Query: 339 FGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI 398
           FG     ++L  +       R   L   + +   +++   K G    A  ++D M    +
Sbjct: 259 FGKLDDAVELFNEV------RQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGL 312

Query: 399 TP 400
           TP
Sbjct: 313 TP 314



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 64/165 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   Y  ++  +           + ++M   G+   + ++++LI G  K 
Sbjct: 60  DELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKR 119

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + + F  +  M+  GF  D+   N +     K    ++A R    M +  V PN  +Y
Sbjct: 120 GLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSY 179

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G       + ++M  AG   +   Y  LI  H+ K
Sbjct: 180 TTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKK 224



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 107/255 (41%), Gaps = 15/255 (5%)

Query: 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170
           VA Y  LI   G     D+  R+FEEM +  +K +   Y  ++N     G     +A+  
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 171 DMTAAGAGLDKFCYAGLITAHTNKIPRADDT-ATKIIELVEQSKGWSSVETSGNNAENEM 229
           ++T  G   +   Y  LI    + + +A +  A +I+    Q++G    +   N     +
Sbjct: 61  ELTEKGLVANVHTYGALI----DGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTL---I 113

Query: 230 MGVSKEELYNLP-TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288
            G  K  L +     + +  + GF + + T+  +A       +  +A   LL M++K   
Sbjct: 114 DGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGV- 172

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQ 347
            P+V      I  Y   G+     K+F++   +   P A  Y  L++    G++ KG M+
Sbjct: 173 VPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLID----GHSKKGRMK 228

Query: 348 LAQDTLVNMNSRNIF 362
            A +    M ++ IF
Sbjct: 229 EAYELRDEMRAKGIF 243


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++    +      R ++ +M   G  P+   ++ ++ G +K   +++   FR
Sbjct: 376 NYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFR 435

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+  G +PDV  Y Y   V G C N   D A+++FEEMK    +PN   Y  L++  A
Sbjct: 436 KEMEKKGLVPDV--YTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLA 493

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTN 193
             G+ +  + +  DM  AG   D   Y+ L+ + HT+
Sbjct: 494 KEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTD 530



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/412 (20%), Positives = 157/412 (38%), Gaps = 62/412 (15%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     NA  YN+++     ++    ++++ + M   G++ T   +  L+      
Sbjct: 156 DEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTA 215

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       D+MKA     DV +Y  +I+   +  N  +A  +F+E     ++PN +TY
Sbjct: 216 GDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTY 275

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+N     GQ++    ++ DM   G G ++  +  +I  +  +     D A K+    
Sbjct: 276 GVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQ--GMVDNALKV---- 329

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA- 268
                          A  E MG+                        L VY     AC  
Sbjct: 330 --------------KAAMEKMGIE-----------------------LDVYTYNTLACGL 352

Query: 269 -ELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
             +  +   +TLL ++ +    P+   Y  + +I C    GD+    ++F +       P
Sbjct: 353 CRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHC--KEGDMVEARRLFREMAGKGAMP 410

Query: 326 PAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
               Y  +    M GY  KG ++ A+     M  +   L P + +   LV     +G   
Sbjct: 411 SVVTYNVM----MDGYIKKGSIREAERFRKEMEKKG--LVPDVYTYASLVHGHCVNGKVD 464

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLR 436
            A  +++ M+ R   P++ A  A  +GL      A + R     + YD++L+
Sbjct: 465 VALKLFEEMKHRGTEPNVVAYTALISGL------AKEGRSEEAFQLYDDMLK 510


>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
 gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
          Length = 546

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 7/153 (4%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++  M+   V P   +  +LI    K   +Q+     D+++  GF+P +  YN LI   
Sbjct: 365 EIWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQEARGLFDELE-RGFVPSLLTYNSLI--I 421

Query: 122 GKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G C+N +  +A R++++M +   +PN  TY  L+      G+ +  YA+ ++M A G   
Sbjct: 422 GLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMVAKGCTP 481

Query: 180 DKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            KF Y  L+ + +   P  DDT   I+E V  S
Sbjct: 482 SKFLYQALVDSLSE--PSHDDTVWTIVEAVALS 512



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 61/145 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TV+T+  ++      + ++DD++  G +P   ++  L+ G     +LQD     D+M+
Sbjct: 242 YTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEME 301

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  P+   Y+ +I  C K   S +A  +  EM      P+      +++     G+  
Sbjct: 302 AAGVKPNEVTYSVVIEACCKEGKSIEACDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAG 361

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               I R M       D    + LI
Sbjct: 362 EANEIWRQMVKKSVPPDNTVVSTLI 386



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLL--------RDVYDDMMLDGVQPTRDLFH 80
           A E  R+    +    NTVV++L     ++L         R ++D++   G  P+   ++
Sbjct: 363 ANEIWRQMVKKSVPPDNTVVSTLI----YWLCKNGMVQEARGLFDELE-RGFVPSLLTYN 417

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           SLI+G  +   LQ+     D M    + P+   Y  LI    K   S++   +F+EM   
Sbjct: 418 SLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMVAK 477

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
              P+   Y  L+++ +     D V+ IV  +  +G     F    L      K+   ++
Sbjct: 478 GCTPSKFLYQALVDSLSEPSHDDTVWTIVEAVALSG---QDFLDGQLWEIFIRKVVDTNE 534

Query: 201 TATKIIELV 209
           T  K ++LV
Sbjct: 535 TWKKKLDLV 543



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 112/305 (36%), Gaps = 49/305 (16%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P++   N L+       + D A+++ +EM  + + P+  TY  +L A  A G L+    +
Sbjct: 202 PNLVSCNILLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQL 261

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENE 228
             D+ A+G   D   Y  L+  + ++    D  A +I++                  E E
Sbjct: 262 FDDIVASGRRPDATMYTVLVDGYCHRGKLQD--AARIMD------------------EME 301

Query: 229 MMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA-ELKDVQAMETLLEMLKKDR 287
             GV   E+                      Y V   AC  E K ++A +   EML    
Sbjct: 302 AAGVKPNEV---------------------TYSVVIEACCKEGKSIEACDLTREMLGAG- 339

Query: 288 KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQ 347
             PD  +  + +      G     ++++   +  +  PP     T+V   ++     GM 
Sbjct: 340 YVPDTPLCAKVVDVLCQDGKAGEANEIWRQMV-KKSVPPDN---TVVSTLIYWLCKNGMV 395

Query: 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEA 407
                L +   R  F+   +  + L++   E +G    A  +WD M  R+  P+    EA
Sbjct: 396 QEARGLFDELERG-FVPSLLTYNSLIIGLCE-NGELQEAGRVWDDMVERRYEPNAMTYEA 453

Query: 408 YYNGL 412
              G 
Sbjct: 454 LIKGF 458



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 95/273 (34%), Gaps = 46/273 (16%)

Query: 100 DQMKANGFLPDVAVYN---------------------------------YLISVCGKCKN 126
           D+M   G +PDV  Y                                  Y + V G C  
Sbjct: 228 DEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYTVLVDGYCHR 287

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
                A RI +EM+   VKPN  TY  ++ AC   G+      + R+M  AG   D    
Sbjct: 288 GKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEACDLTREMLGAGYVPDTPLC 347

Query: 185 AGL--ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
           A +  +     K   A++   ++++         SV          +  + K  +     
Sbjct: 348 AKVVDVLCQDGKAGEANEIWRQMVK--------KSVPPDNTVVSTLIYWLCKNGMVQEAR 399

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
             +     GF+  LLT   +    C E  ++Q    + + + + R  P+       I+ +
Sbjct: 400 GLFDELERGFVPSLLTYNSLIIGLC-ENGELQEAGRVWDDMVERRYEPNAMTYEALIKGF 458

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              G  + G+ +F++ +     P   LY  LV+
Sbjct: 459 CKIGKSNEGYALFKEMVAKGCTPSKFLYQALVD 491


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 134/336 (39%), Gaps = 44/336 (13%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH---------------- 80
           + +N S YNT++  L  + +    RD+  DM  +G+ P R+ F+                
Sbjct: 244 FPDNVS-YNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAA 302

Query: 81  -------------------SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
                               LI G  K  ++ + F  +D+M+    LPDV  YN LI+ C
Sbjct: 303 QVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGC 362

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
             C +S +   + ++M+   VKPN  TY  ++      G++D     +R M  +G   D 
Sbjct: 363 FDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDC 422

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNL 240
             +  LI  +  K  R  +    + E+    KG      + N   + + G  K ++ Y L
Sbjct: 423 VTFNTLINGYC-KAGRLSEAFRMMDEM--SRKGLKMNSVTLNTILHTLCGERKLDDAYKL 479

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
            ++    +RG F+   ++   +      + K V+AM+   EM K+    P +      I 
Sbjct: 480 LSS--ASKRGYFVDE-VSYGTLIMGYFKDGKSVEAMKLWDEM-KEKEIIPSIITYNTMIG 535

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
              HSG  D       + + S   P    Y T++ G
Sbjct: 536 GLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILG 571



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/168 (19%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L    +     D  ++++  G+ P    ++++I+G  +  +++  F F ++M 
Sbjct: 530 YNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMV 589

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
              F PD+   N L+   G C     D+A+++F          +  TY  +++      +
Sbjct: 590 KKSFKPDLFTCNILLR--GLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDR 647

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
            +  + ++ +M     G D + Y  +++A  +  ++  A++  ++I+E
Sbjct: 648 FEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVE 695



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 134/340 (39%), Gaps = 43/340 (12%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           A+ N   +   YN ++  L    +    F L+D  +++ L    P    +++LI G    
Sbjct: 309 AQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKL---LPDVVTYNTLINGCFDC 365

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           S     F   D+M+  G  P+   YN ++    K    D A     +M++    P+  T+
Sbjct: 366 SSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTF 425

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+N    AG+L   + ++ +M+  G  ++      ++  HT    R  D A K++   
Sbjct: 426 NTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTIL--HTLCGERKLDDAYKLLSSA 483

Query: 210 EQSKGWSSVETS-----------GNNAENEMMGVSKEELYNLPT-AEYVHRRGGF----- 252
            + +G+   E S           G + E   +    +E   +P+   Y    GG      
Sbjct: 484 SK-RGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGK 542

Query: 253 -------LSRLL--------TVYH-VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVM 296
                  L+ LL        T Y+ +    C E +  +A +   +M+KK  K PD++   
Sbjct: 543 TDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFK-PDLFTCN 601

Query: 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             +R     G +D   K+F  +I   K   A  Y T++ G
Sbjct: 602 ILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISG 641



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 45  NTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           NT++ +L    S+   +L + ++ D++  GV+   + F+ LI G    ++L +      +
Sbjct: 178 NTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGK 237

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MK     PD   YN ++ V  K    ++A  +  +MK   + PN  T+  L++     G 
Sbjct: 238 MKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGW 297

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           L     ++  M       D + Y  LI
Sbjct: 298 LKEAAQVIDLMAQNNVLPDVWTYNMLI 324



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 16/161 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDM--------MLDGVQPTRDLFHS 81
           +E +R+    N+   NT++ +L  +R+   L D Y  +         +D V      + +
Sbjct: 446 DEMSRKGLKMNSVTLNTILHTLCGERK---LDDAYKLLSSASKRGYFVDEVS-----YGT 497

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           LI+G  K  +  +     D+MK    +P +  YN +I        +DQ+I    E+ +  
Sbjct: 498 LIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESG 557

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           + P+  TY  ++      GQ++  +     M       D F
Sbjct: 558 LVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLF 598


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    R    +D+  +M  +GV PT + F++LI    +  +L+  F    +M+
Sbjct: 409 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 468

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+V  Y  +++   K     +A+ I ++M   +V PN Q Y  +++A    G  D
Sbjct: 469 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             + +V  M + G       Y  LI    N+
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQ 559



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN V+  +    R     +V+D+M    V P    ++++I G +KG  L+  F  R
Sbjct: 195 NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLR 254

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P+   YN L+S   +     +   + +EM   ++ P+G TY  L +  +  
Sbjct: 255 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 314

Query: 160 G 160
           G
Sbjct: 315 G 315



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++  L    +  +  +V   ++  G+ PTR ++++LI G  +   L+  F    QMK+  
Sbjct: 342 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 401

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             PD   YN LI+   K +    A  +  EM+   V P  +T+  L++A    GQL+  +
Sbjct: 402 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 461

Query: 167 AIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
            ++ +M   G   +   Y  ++ A     KIP A
Sbjct: 462 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 495



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G L + F V S    E        N   Y ++V +     +      + DDM    V P 
Sbjct: 455 GQLEKCFIVLS----EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 510

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRI 133
             +++++I   ++       F   ++MK+NG  P +  YN LI   G C  S   +A  I
Sbjct: 511 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEI 568

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
              +  + + P+  +Y  L++AC   G +D    + + M   G
Sbjct: 569 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 611



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 40  NASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NA  YN ++ +        + F L+    + M  +G+ P+   ++ LI G    S++ + 
Sbjct: 510 NAQVYNAIIDAYVEHGPNDQAFILV----EKMKSNGISPSIVTYNLLIKGLCNQSQISEA 565

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + +  +  +PD   YN LIS C    N D+A+ + + M KY +K   +TY  L++ 
Sbjct: 566 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 625

Query: 156 CAAAGQL 162
              AG+L
Sbjct: 626 LGGAGRL 632



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 64/162 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   YNT++              + D M+  G++P    ++ L+ G  + 
Sbjct: 220 DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRA 279

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +T    D+M +   +PD   Y+ L     +  +S   + +F +  K  V     T 
Sbjct: 280 GRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTC 339

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             LLN     G++     +++ +  AG    +  Y  LI  +
Sbjct: 340 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY 381



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT++++   +       D+   M   G++ T   +H LI G     RL +  +  
Sbjct: 580 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLY 639

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            +M  N  +P  A++N ++    K  N  +A  + +EM
Sbjct: 640 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 677


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 155/381 (40%), Gaps = 36/381 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L    R     +++  M  +   P    ++++I+G     R +D +   ++++
Sbjct: 153 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 212

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P V  +N +++  GK +  D+A+ +FE MKK + +PN  TY  +++     G+++
Sbjct: 213 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVE 271

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y I+ +M  A        +  L+T +        D   K  +L E  K + S    G 
Sbjct: 272 EAYRILDEMEHASL------FPNLLTVNI-----MVDRLCKARKLEEAYKIFESASQRGC 320

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA-----------FHACAELKD 272
           N +        + L      +  +R      ++L   H A           F      +D
Sbjct: 321 NPDCVTYCSLIDGLGKKGQVDEAYR---LFEKMLDAGHNANPVVYTSLIRNFFIHGRKED 377

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
               +   E++++  K PD+ ++   + C   +G+++ G  +FED       P    Y+ 
Sbjct: 378 --GHKVFKELIRRGCK-PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSI 434

Query: 333 LVEGAMFGYTPKGMQLAQDTLVN-MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD 391
           L+     G T  G       + + M  +   L  R  +   +V    KSG    A  I +
Sbjct: 435 LIH----GLTKAGQARETSNIFHAMKQQGFALDARAYN--AVVDGFCKSGKVHKAYEILE 488

Query: 392 LMQARKITPSLPAVEAYYNGL 412
            M+ + + P++    A  +GL
Sbjct: 489 EMKEKCVQPTVATYGAIVDGL 509



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 155/387 (40%), Gaps = 39/387 (10%)

Query: 2   RLLQSIYRHHKSVGGALGRRFFVTSAGAE------EYARRNYANNASEYNTVVTSLTSQR 55
           ++L + +  +  V  +L R FF+     +      E  RR    + +  NT +  +    
Sbjct: 349 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAG 408

Query: 56  RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115
                R +++D+   G  P    +  LI G  K  + ++T      MK  GF  D   YN
Sbjct: 409 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 468

Query: 116 YLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            ++   G CK+    +A  I EEMK+  V+P   TY  +++  A   +LD  Y +  +  
Sbjct: 469 AVVD--GFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK 526

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-----KGWSSVETSGNNAE-- 226
           + G  L+   Y+ LI     K+ R D+    + E++++        W+S+  +   AE  
Sbjct: 527 SKGIELNVVLYSSLIDGF-GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 585

Query: 227 NEMMGV--SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
           NE +    S +E+   P   Y              Y +  +    ++         + ++
Sbjct: 586 NEALVCFQSMKEM-KCPPNTY-------------TYSILINGLCRVQKYNKAFVFWQDMQ 631

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
           K    P+V      I      G+I + + +FE +  +   P A  +  L+EG       +
Sbjct: 632 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEG--MSNANR 689

Query: 345 GMQLAQDTLVNMNSRNI---FLSPRMG 368
            M+  Q T+  ++S +    FL P  G
Sbjct: 690 AMEAYQTTVYQLSSSSCSWNFLVPDEG 716



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    R    +   +N+++T L  +R+      +++ M  D  +P    ++ +I     G
Sbjct: 209 ERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLG 267

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++ +   D+M+     P++   N ++    K +  ++A +IFE   +    P+  TY
Sbjct: 268 GRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 327

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++     GQ+D  Y +   M  AG   +   Y  LI
Sbjct: 328 CSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 366



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S Y  ++ +L   RR     ++   M   G +    LF +L+    +  ++ D     D+
Sbjct: 46  SAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDE 105

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K +   PD+ +YN  I   GK  N D A + F E+K   +KP+  +Y  ++     AG+
Sbjct: 106 VKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 165

Query: 162 LDPVYAIVRDMTA 174
           L     +   M A
Sbjct: 166 LGEAEELFAQMEA 178



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 108/275 (39%), Gaps = 11/275 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T+V +L  + +      + D++    ++P   L++  I    K   +     F  ++K
Sbjct: 83  FTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELK 142

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  PD   Y  +I V  K     +A  +F +M+     P    Y  ++    +AG+ +
Sbjct: 143 AQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFE 202

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y ++  +   G       +  ++T    K  R  D A  + E++++    +   +S  
Sbjct: 203 DAYKLLERLRERGCIPSVVSFNSILTCLGKK--RKVDEALSLFEVMKKD---AEPNSSTY 257

Query: 224 NAENEM--MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
           N   +M  +G   EE Y +   E  H        LLTV  +    C   K  +A + + E
Sbjct: 258 NIIIDMLCLGGRVEEAYRI-LDEMEH--ASLFPNLLTVNIMVDRLCKARKLEEAYK-IFE 313

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
              +   +PD       I      G +D  +++FE
Sbjct: 314 SASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 348



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 68/388 (17%), Positives = 148/388 (38%), Gaps = 17/388 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  ++R    +   Y +++  L  + +      +++ M+  G      ++ SLI      
Sbjct: 313 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 372

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +D      ++   G  PD+ + N  +    K    ++   IFE+++ Y   P+ ++Y
Sbjct: 373 GRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY 432

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
             L++    AGQ      I   M   G  LD   Y  ++     + K+ +    A +I+E
Sbjct: 433 SILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHK----AYEILE 488

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            +++     +V T G   +    G++K +  +     +   +   +   + +Y       
Sbjct: 489 EMKEKCVQPTVATYGAIVD----GLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 544

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            ++  +     +LE + K   +P+VY     +   + + +I+     F+     +  P  
Sbjct: 545 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNT 604

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
             Y+ L+ G        K     QD    M  +   L P + +   +++   K G  T A
Sbjct: 605 YTYSILINGLCRVQKYNKAFVFWQD----MQKQG--LVPNVVTYTTMISGLAKVGNITDA 658

Query: 387 NYIWDLMQARKITPSLPAVEAYYNGLKD 414
             +++  +A    P   +  A   G+ +
Sbjct: 659 YSLFERFKANGGIPDAASFNALIEGMSN 686



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 60/150 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +++   N+S YN ++  L    R      + D+M    + P     + ++    K  
Sbjct: 244 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 303

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L++ +   +     G  PD   Y  LI   GK    D+A R+FE+M       N   Y 
Sbjct: 304 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYT 363

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            L+      G+ +  + + +++   G   D
Sbjct: 364 SLIRNFFIHGRKEDGHKVFKELIRRGCKPD 393


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    R    +D+  +M  +GV PT + F++LI    +  +L+  F    +M+
Sbjct: 228 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 287

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+V  Y  +++   K     +A+ I ++M   +V PN Q Y  +++A    G  D
Sbjct: 288 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 347

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             + +V  M + G       Y  LI    N+
Sbjct: 348 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQ 378



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++  L    +  +  +V   ++  G+ PTR ++++LI G  +   L+  F    QMK+  
Sbjct: 161 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 220

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             PD   YN LI+   K +    A  +  EM+   V P  +T+  L++A    GQL+  +
Sbjct: 221 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 280

Query: 167 AIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
            ++ +M   G   +   Y  ++ A     KIP A
Sbjct: 281 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 314



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN V+  +    R     +V+D+M    V P    ++++I G +KG  L+  F  R
Sbjct: 14  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 73

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P+   YN L+S   +     +   + +EM   ++ P+G TY  L +  +  
Sbjct: 74  DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 133

Query: 160 G 160
           G
Sbjct: 134 G 134



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 8/177 (4%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G L + F V S    E        N   Y ++V +     +      + DDM    V P 
Sbjct: 274 GQLEKCFIVLS----EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRI 133
             +++++I   ++       F   ++MK+NG  P +  YN LI   G C  S   +A  I
Sbjct: 330 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEI 387

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +  + + P+  +Y  L++AC   G +D    + + M   G       Y  LI+ 
Sbjct: 388 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 444



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)

Query: 40  NASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NA  YN ++ +        + F L+    + M  +G+ P+   ++ LI G    S++ + 
Sbjct: 329 NAQVYNAIIDAYVEHGPNDQAFILV----EKMKSNGISPSIVTYNLLIKGLCNQSQISEA 384

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + +  +  +PD   YN LIS C    N D+A+ + + M KY +K   +TY  L++ 
Sbjct: 385 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 444

Query: 156 CAAAGQLDPVYAIVRDM 172
              AG+L+ +  + + M
Sbjct: 445 LGGAGRLNEMEYLYQKM 461



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 70  DGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           DG  P     ++ +I G  +  R  D     D+M     LP+   YN +I    K  + +
Sbjct: 8   DGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLE 67

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
              R+ ++M  + +KPN  TY  LL+    AG++    A++ +M +     D F Y+ L
Sbjct: 68  AGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSIL 126



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 6/165 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E   R    N   YNT++            F LRD    M+  G++P    ++ L+ G 
Sbjct: 39  DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRD---QMVCHGLKPNAITYNVLLSGL 95

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            +  R+ +T    D+M +   +PD   Y+ L     +  +S   + +F +  K  V    
Sbjct: 96  CRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGD 155

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            T   LLN     G++     +++ +  AG    +  Y  LI  +
Sbjct: 156 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY 200



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT++++   +       D+   M   G++ T   +H LI G     RL +  +  
Sbjct: 399 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 458

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            +M  N  +P  A++N ++    K  N  +A  + +EM
Sbjct: 459 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 496


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +  A +   YN ++     +       +++++M   GV+ T   + SLI    K 
Sbjct: 316 EEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 375

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++Q+T    D+    G  PD+ +YN LI+      N D+A  I  EM+K  + P+  TY
Sbjct: 376 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 435

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+      G++D    ++ +MT  G   D   Y  LI+ ++ K
Sbjct: 436 NTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMK 480



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 144/391 (36%), Gaps = 54/391 (13%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVG 85
           A A E  R+    NA  YNTV+    S+ R     D+  +M    G+ P +  + ++I G
Sbjct: 171 ARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 230

Query: 86  TMKGSRLQDTFFFRDQMKANGFL-PDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEV 142
             K  R+ +     D+M   G + P+  +YN LI   G C     D A+   + M +  V
Sbjct: 231 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG--GYCDQGKLDTALLYRDRMVERGV 288

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
                TY  L++A    G+    Y +V +M   G  LD F Y  LI  H       +   
Sbjct: 289 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCK-----EGNV 343

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV 262
            K +E+ E                                   + RRG  +   +  Y  
Sbjct: 344 KKALEIFEN----------------------------------MSRRG--VRATVVTYTS 367

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             +A ++   VQ  + L +   +    PD+ +    I  +  SG+ID   ++  +     
Sbjct: 368 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 427

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y TL+ G  + G   +  +L  +    M  R I   P + +   L++     G
Sbjct: 428 IAPDDVTYNTLMRGLCLLGRVDEARKLIDE----MTKRGI--QPDLVTYNTLISGYSMKG 481

Query: 382 GYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               A  I + M  +   P+L    A   GL
Sbjct: 482 DVKDALRIRNEMMNKGFNPTLLTYNALIQGL 512



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 69/171 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR    +   YN ++ S ++        ++  +M    + P    +++L+ G    
Sbjct: 386 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 445

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +     D+M   G  PD+  YN LIS      +   A+RI  EM      P   TY
Sbjct: 446 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 505

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             L+      GQ D    +V++M   G   D   Y  LI   T +  RA D
Sbjct: 506 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAID 556



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 1/182 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  +RR        Y +++ +L+ + +      ++D+ +  G++P   L+++LI      
Sbjct: 351 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 410

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F    +M+     PD   YN L+         D+A ++ +EM K  ++P+  TY
Sbjct: 411 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTY 470

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++  +  G +     I  +M   G       Y  LI     K  + DD    + E+V
Sbjct: 471 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLC-KNGQGDDAENMVKEMV 529

Query: 210 EQ 211
           E 
Sbjct: 530 EN 531


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    R    +D+  +M  +GV PT + F++LI    +  +L+  F    +M+
Sbjct: 276 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 335

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+V  Y  +++   K     +A+ I ++M   +V PN Q Y  +++A    G  D
Sbjct: 336 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             + +V  M + G       Y  LI    N+
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQ 426



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++  L    +  +  +V   ++  G+ PTR ++++LI G  +   L+  F    QMK+  
Sbjct: 209 LLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 268

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             PD   YN LI+   K +    A  +  EM+   V P  +T+  L++A    GQL+  +
Sbjct: 269 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 328

Query: 167 AIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
            ++ +M   G   +   Y  ++ A     KIP A
Sbjct: 329 IVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 362



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN V+  +    R     +V+D+M    V P    ++++I G +KG  L+  F  R
Sbjct: 62  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 121

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P+   YN L+S   +     +   + +EM   ++ P+G TY  L +  +  
Sbjct: 122 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 181

Query: 160 G 160
           G
Sbjct: 182 G 182



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 8/177 (4%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G L + F V S    E        N   Y ++V +     +      + DDM    V P 
Sbjct: 322 GQLEKCFIVLS----EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRI 133
             +++++I   ++       F   ++MK+NG  P +  YN LI   G C  S   +A  I
Sbjct: 378 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIK--GLCNQSQISEAEEI 435

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +  + + P+  +Y  L++AC   G +D    + + M   G       Y  LI+ 
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 492



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 8/137 (5%)

Query: 40  NASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NA  YN ++ +        + F L+    + M  +G+ P+   ++ LI G    S++ + 
Sbjct: 377 NAQVYNAIIDAYVEHGPNDQAFILV----EKMKSNGISPSIVTYNLLIKGLCNQSQISEA 432

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + +  +  +PD   YN LIS C    N D+A+ + + M KY +K   +TY  L++ 
Sbjct: 433 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 492

Query: 156 CAAAGQLDPVYAIVRDM 172
              AG+L+ +  + + M
Sbjct: 493 LGGAGRLNEMEYLYQKM 509



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 67  MMLDGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           M  DG  P     ++ +I G  +  R  D     D+M     LP+   YN +I    K  
Sbjct: 53  MGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGG 112

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           + +   R+ ++M  + +KPN  TY  LL+    AG++    A++ +M +     D F Y+
Sbjct: 113 DLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYS 172

Query: 186 GL 187
            L
Sbjct: 173 IL 174



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 6/165 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E   R    N   YNT++            F LRD    M+  G++P    ++ L+ G 
Sbjct: 87  DEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRD---QMVCHGLKPNAITYNVLLSGL 143

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            +  R+ +T    D+M +   +PD   Y+ L     +  +S   + +F +  K  V    
Sbjct: 144 CRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGD 203

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            T   LLN     G++     +++ +  AG    +  Y  LI  +
Sbjct: 204 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY 248



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT++++   +       D+   M   G++ T   +H LI G     RL +  +  
Sbjct: 447 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 506

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            +M  N  +P  A++N ++    K  N  +A  + +EM
Sbjct: 507 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 544


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 129/318 (40%), Gaps = 23/318 (7%)

Query: 29  AEEY----ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AEE+    A +    +   YNT++        F     + + M   GV+P    + SLI 
Sbjct: 440 AEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLIN 499

Query: 85  GTMK-GSRLQDTFFFRDQMKANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKY 140
              K G  L+     RD M   G LP+  VYN LI    + GK K+   A+R F+EM + 
Sbjct: 500 CLCKDGKILEAEIVLRD-MICRGVLPNAQVYNMLIDGSCMVGKVKD---ALRFFDEMMRS 555

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           E+ P   TY  L++     G+L      +  +T++G   D   Y  LI+ + N       
Sbjct: 556 EISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANA-----G 610

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--LT 258
             +K + L E  K    ++ +       + G SKE    +   E ++     ++ L    
Sbjct: 611 NVSKCLGLYETMKNL-GIKPTVRTYHPLISGCSKE---GIELVEKLYNEMLQMNLLPDRV 666

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
           VY+   H  AE+ + Q   +L + +      PD       I  +   G + N   +  + 
Sbjct: 667 VYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNM 726

Query: 319 ICSEKFPPAELYATLVEG 336
              E  P A+ Y  LV+G
Sbjct: 727 KAKELAPKADTYDILVKG 744



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 125/312 (40%), Gaps = 14/312 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E    N   +   YNT++              + + M    V P    F+SL+ G  K 
Sbjct: 235 DEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKM 294

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++++      +M+ NGF+PD   Y+ L     +C + + A+ ++E+  +  ++ N  T 
Sbjct: 295 RKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTG 354

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             LLN     G+++    I++  T  G   D+  Y   +  +     R  D    I+ + 
Sbjct: 355 SILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYC----RIGDMNKAILTIE 410

Query: 210 E-QSKGWSSVETSGNNAEN---EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
             +S G      + N+  +   +M  + K E +    AE    +G  ++  +  Y+    
Sbjct: 411 RMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAE----KG--VTPSVETYNTLID 464

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
              +L        +LE +++    P+V      I C    G I     V  D IC    P
Sbjct: 465 GYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLP 524

Query: 326 PAELYATLVEGA 337
            A++Y  L++G+
Sbjct: 525 NAQVYNMLIDGS 536



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 5/148 (3%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M   GV+P   +++ LI G  +  R++D     D+M     +  +  YN LI    K 
Sbjct: 200 DSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKV 259

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A ++ E MK+  V PN  T+  LL+      ++    +++++M   G   D + Y
Sbjct: 260 GELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTY 319

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQS 212
           + L       + R DD     +EL EQ+
Sbjct: 320 SILFDG----LLRCDD-GNGAMELYEQA 342



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 138/359 (38%), Gaps = 29/359 (8%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N+  +N+++      +      +    M   GV P+ + +++LI G  K       F   
Sbjct: 420 NSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQIL 479

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +QM+  G  P+V  Y  LI+   K     +A  +  +M    V PN Q Y  L++     
Sbjct: 480 EQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMV 539

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKII------ELVEQ 211
           G++        +M  +        Y  LI       K+  A+D  T+I       +++  
Sbjct: 540 GKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITY 599

Query: 212 SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
           +   S    +GN +  + +G+  E + NL     V             YH     C++ +
Sbjct: 600 NSLISGYANAGNVS--KCLGLY-ETMKNLGIKPTVR-----------TYHPLISGCSK-E 644

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
            ++ +E L   + +    PD  +    I CY   G+    + + +  +     P    Y 
Sbjct: 645 GIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYN 704

Query: 332 TLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
           +L+ G    +    +   +D + NM ++   L+P+  +  +LV        ++ A Y+W
Sbjct: 705 SLILGH---FREGKLSNIKDLVNNMKAKE--LAPKADTYDILVKGHCDLKDFSGA-YVW 757



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 61/139 (43%)

Query: 52  TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV 111
            ++++F  + D++ ++   G +    ++   I   +K   L+    F D M+  G  P+V
Sbjct: 152 VNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNV 211

Query: 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
            +YN LI    + K    A ++F+EM    +  +  TY  L++     G+LD  + +   
Sbjct: 212 FIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRER 271

Query: 172 MTAAGAGLDKFCYAGLITA 190
           M       +   +  L++ 
Sbjct: 272 MKEKSVAPNIITFNSLLSG 290



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++  M+  G+ P +  ++SLI+G  +  +L +     + MKA    P    Y+ L+   G
Sbjct: 687 LHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVK--G 744

Query: 123 KC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            C  K+   A   + EM +    PN      L       G+L  V  I  +M   G
Sbjct: 745 HCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKG 800


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 13/307 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+ Y  +   YN ++ +L           V++DM      P    +  LI  + K 
Sbjct: 210 EEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKA 269

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R      F D+M + G + ++  +N +I   GK K  D+ I +  +M + + +PN  TY
Sbjct: 270 GRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTY 329

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              L+  A  GQL  +  ++ D+ +       + Y       +     A +   ++    
Sbjct: 330 SITLDILATEGQLHRLNEVL-DICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRM---- 384

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR--RGGFLSRLLTVYHVAFHAC 267
                W+S E    +A   M+ V       L   + +H     G ++  + +Y++ F A 
Sbjct: 385 -----WNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTD-VGMYNMVFSAL 438

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +LK V  +  L + +K +   PDV+     I  Y   G +D   ++FE    S   P  
Sbjct: 439 GKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDV 498

Query: 328 ELYATLV 334
             Y +L+
Sbjct: 499 VTYNSLI 505



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           +G +K        F  D+MK NG +PDV  YN +IS  G+    D+A  +FE M+    K
Sbjct: 438 LGKLKQVSFISNLF--DKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCK 495

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           P+  TY  L+N     G LD  + + ++M   G   D F Y+ LI     +NK+  A
Sbjct: 496 PDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMA 552



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 51/112 (45%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +  ++   ++   +   F   ++M+  G+  D+  YN L+    K    DQA ++FE+MK
Sbjct: 189 YKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMK 248

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +    P+  TY  L+     AG+     +   +M + G  L+   +  +I A
Sbjct: 249 QKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA 300



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M     +P    ++SLI    K   L +      +M+  G+ PDV  Y+ LI   
Sbjct: 484 ELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF 543

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK    + A  +F+EM      PN  TY  LL+     G+ +  + +   M   G   D 
Sbjct: 544 GKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDS 603

Query: 182 FCYAGL 187
             Y+ L
Sbjct: 604 ITYSIL 609



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L           ++ +M   G  P    +  LI    K ++++      D+M 
Sbjct: 501 YNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMI 560

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           + G  P++  YN L+    +   +++A +++E MK+  + P+  TY  L
Sbjct: 561 SEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N+  +N ++      + F  +  +++DM   GV+P    ++SL+    K     + 
Sbjct: 323 NCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEV 382

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                 MK  GF PD A +N LI   G+C +SDQA+ I++ M +    P+  T+  LL A
Sbjct: 383 LKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAA 442

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            A  G+ +    I+ ++  +    +   YA ++ A+ N
Sbjct: 443 LAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYAN 480



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFFRDQM 102
           Y +++++L+  R+F      ++ M   G QP+   ++ +I +   KG   ++     ++M
Sbjct: 120 YTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEM 179

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           KA G  PD   YN  I+ C      ++A  +F +MK     P+  TY  LL+    AG  
Sbjct: 180 KAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWY 239

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +    ++++M +AG   +   Y  L++A
Sbjct: 240 NEAANVLKEMESAGCLPNIVTYNELLSA 267



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 1/150 (0%)

Query: 44  YNTVVTSLTSQ-RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YN ++     + R +  + +++++M   G+QP    +++ I     GS  ++      QM
Sbjct: 155 YNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQM 214

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K++   PD   YN L+ V GK    ++A  + +EM+     PN  TY  LL+A   AG  
Sbjct: 215 KSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLC 274

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +    +   M + G   D F Y  L++A++
Sbjct: 275 NAAAEMKDSMVSKGIEPDVFTYTSLLSAYS 304



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ D M+  G++P    + SL+    +  +++      +QM+ +   P+   +N LI + 
Sbjct: 279 EMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMH 338

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK KN  + + IFE+M+   V+P+  T+  LL A    G    V  + R M  AG   DK
Sbjct: 339 GKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDK 398

Query: 182 FCYAGLITAH 191
             +  LI A+
Sbjct: 399 ATFNILIEAY 408



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 63/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++++ +   +     ++Y+ M      P    F++LI    K     +     + M+
Sbjct: 296 YTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQ 355

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  PD+  +N L+   GK     + +++F  MKK   +P+  T+  L+ A    G  D
Sbjct: 356 ACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSD 415

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +I   M  AG   D   +  L+ A
Sbjct: 416 QALSIYDGMLQAGCTPDLATFNTLLAA 442



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEM 137
           + SLI    +  + ++   F +QMK  G  P +  YN +I + GK   S +  + +FEEM
Sbjct: 120 YTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEM 179

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           K   ++P+  TY   + ACA+    +    +   M ++    D+  Y  L+  +
Sbjct: 180 KAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVY 233



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT +T+  S        +++  M      P R  +++L+    K     +      +M+
Sbjct: 191 YNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEME 250

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G LP++  YN L+S  G+    + A  + + M    ++P+  TY  LL+A + AG+++
Sbjct: 251 SAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVE 310

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
               I   M  +    + F +  LI  H
Sbjct: 311 QAMEIYNQMRTSNCTPNSFTFNALIGMH 338



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 50/129 (38%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +V  +M   G  P    ++ L+    +          +D M + G  PDV  Y  L+S  
Sbjct: 244 NVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAY 303

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            +    +QA+ I+ +M+     PN  T+  L+           +  I  DM A G   D 
Sbjct: 304 SRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDI 363

Query: 182 FCYAGLITA 190
             +  L+ A
Sbjct: 364 VTWNSLLGA 372



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  PD+  YN +I    K      A RIF EM    ++P+  TY   +      G   
Sbjct: 601 AAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFP 660

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
              ++V+ M   G   D+  Y  L+ A+  KI + ++   +I++ ++ S
Sbjct: 661 EALSVVKHMHKTGCKPDEVTYRTLVDAYC-KIGKFEEVE-RILKFIKSS 707



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 31/246 (12%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++  G+  DV  Y  LIS   + +   +A+  FE+MK+   +P+  TY  +++     G+
Sbjct: 108 LREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR 167

Query: 162 -LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
             + +  +  +M A G   D++ Y   ITA       +     +  EL  Q K  SS  T
Sbjct: 168 SWENILELFEEMKAQGIQPDEYTYNTAITACA-----SGSLCEEATELFTQMK--SSNCT 220

Query: 221 SGNNAENEMMGV-SKEELYNLPTAEYVHRR---GGFLSRLLTVYHV--AF------HACA 268
                 N ++ V  K   YN   A  V +     G L  ++T   +  AF      +A A
Sbjct: 221 PDRVTYNALLDVYGKAGWYN--EAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAA 278

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           E+KD         M+ K  + PDV+     +  Y  +G ++   +++     S   P + 
Sbjct: 279 EMKD--------SMVSKGIE-PDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSF 329

Query: 329 LYATLV 334
            +  L+
Sbjct: 330 TFNALI 335


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++++ L   R+    R + ++M+ +GV P    + +L  G  +   ++  F    +MK
Sbjct: 335 YNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMK 394

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 D+  Y  L+  C K     +A  +F+++    +K N  TY  +L+  A  G+L 
Sbjct: 395 KENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELS 454

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++ DM   G  LD  CY   I A
Sbjct: 455 KARDLLNDMQKHGFHLDTICYTSFIKA 481



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 2/191 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E++   N       YN++V +         +  +   M  +G Q    L+ +++ G  + 
Sbjct: 111 EKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEI 170

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +    F  ++KA G  P  A Y  ++ +  K  N  +A+ I EEM K+ V PN   Y
Sbjct: 171 RDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIY 230

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++  A  G     + +  DM +AG   D   Y  L+ A   K  R D  A  ++E +
Sbjct: 231 AMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFC-KAGRMDK-ALGVLENI 288

Query: 210 EQSKGWSSVET 220
           E ++   ++ET
Sbjct: 289 EANRLLPTIET 299



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V +     R      V +++  + + PT + + S++ G +KG  +Q      D++K
Sbjct: 265 YNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIK 324

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  YN L+S   K +  + A  +  EM    V PN ++Y  L    A AG ++
Sbjct: 325 TAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVE 384

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + + + M      +D   Y  L+ A
Sbjct: 385 KAFGMFQRMKKENLAIDIVAYGALLKA 411



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 48/310 (15%), Positives = 113/310 (36%), Gaps = 41/310 (13%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A  EE   +    N + + ++++   S          ++    + + P   +++S++   
Sbjct: 73  ACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAY 132

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            +   ++       QM+  GF  ++ +Y  +++   + ++ ++ +  F  +K   + P  
Sbjct: 133 CQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTA 192

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            TY C++     AG +     I+ +M   G   +K  YA ++  +     R  D      
Sbjct: 193 ATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGY----ARGGDFTAAF- 247

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
                 K W  + ++G                              L   + +Y++  HA
Sbjct: 248 ------KVWEDMVSAG------------------------------LKPDIVIYNILVHA 271

Query: 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
             +   +     +LE ++ +R  P +      +  Y+  G+I    +VF+    +   P 
Sbjct: 272 FCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPG 331

Query: 327 AELYATLVEG 336
              Y +L+ G
Sbjct: 332 VVSYNSLLSG 341



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 141/368 (38%), Gaps = 51/368 (13%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  ++ M    ++P   ++ SLI    +   ++      ++M + G   + AV+  +IS 
Sbjct: 37  RATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISG 96

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                N++ A   FE+ K   + P G  Y  ++ A   AG ++ V A++  M   G   +
Sbjct: 97  YASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGN 156

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
                GL T   N      D   K +    + K                 G+S       
Sbjct: 157 ----LGLYTTVLNGFAEIRDE-EKCLSFFHRLKA---------------CGLS------- 189

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
           PTA       G + +L T          +  ++     +LE + K   SP+  I    + 
Sbjct: 190 PTAATY----GCIVKLFT----------KAGNMAKALDILEEMDKHGVSPNKMIYAMIMD 235

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSR 359
            Y   GD     KV+ED + +   P   +Y  LV      +   G M  A   L N+ + 
Sbjct: 236 GYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVH----AFCKAGRMDKALGVLENIEAN 291

Query: 360 NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL-KDREVP 418
            +   P + +   ++    K G    A  ++D ++   + P + +  +  +GL K R++ 
Sbjct: 292 RLL--PTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQM- 348

Query: 419 ADDPRLVV 426
            ++ RL++
Sbjct: 349 -ENARLML 355



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/119 (20%), Positives = 52/119 (43%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +V+  +   G++  R  + +++ G  +   L       + M+ +GF  D   Y   I  C
Sbjct: 423 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKAC 482

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            +  ++++       M++ +++ N +TY  L++   AA   D   +      A+G  LD
Sbjct: 483 FRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLD 541


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 13/307 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+ Y  +   YN ++ +L           V++DM      P    +  LI  + K 
Sbjct: 152 EEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKA 211

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R      F D+M + G + ++  +N +I   GK K  D+ I +  +M + + +PN  TY
Sbjct: 212 GRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTY 271

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              L+  A  GQL  +  ++ D+ +       + Y       +     A +   ++    
Sbjct: 272 SITLDILATEGQLHRLNEVL-DICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRM---- 326

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR--RGGFLSRLLTVYHVAFHAC 267
                W+S E    +A   M+ V       L   + +H     G ++  + +Y++ F A 
Sbjct: 327 -----WNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTD-VGMYNMVFSAL 380

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +LK V  +  L + +K +   PDV+     I  Y   G +D   ++FE    S   P  
Sbjct: 381 GKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDV 440

Query: 328 ELYATLV 334
             Y +L+
Sbjct: 441 VTYNSLI 447



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           +G +K        F  D+MK NG +PDV  YN +IS  G+    D+A  +FE M+    K
Sbjct: 380 LGKLKQVSFISNLF--DKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCK 437

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           P+  TY  L+N     G LD  + + ++M   G   D F Y+ LI     +NK+  A
Sbjct: 438 PDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMA 494



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 51/112 (45%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +  ++   ++   +   F   ++M+  G+  D+  YN L+    K    DQA ++FE+MK
Sbjct: 131 YKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMK 190

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +    P+  TY  L+     AG+     +   +M + G  L+   +  +I A
Sbjct: 191 QKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA 242



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M     +P    ++SLI    K   L +      +M+  G+ PDV  Y+ LI   
Sbjct: 426 ELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF 485

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK    + A  +F+EM      PN  TY  LL+     G+ +  + +   M   G   D 
Sbjct: 486 GKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDS 545

Query: 182 FCYAGL 187
             Y+ L
Sbjct: 546 ITYSIL 551



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L           ++ +M   G  P    +  LI    K ++++      D+M 
Sbjct: 443 YNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMI 502

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           + G  P++  YN L+    +   +++A +++E MK+  + P+  TY  L
Sbjct: 503 SEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 2/176 (1%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   Y  ++      +        +++M+  G +P     H+++ G +K  +  D  
Sbjct: 368 FTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAI 427

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + MKA G  P+V  Y  LI    K     +A+  F+EM     +P+   Y CL+   
Sbjct: 428 KLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGF 487

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
               ++D VYA++++M   G   D   Y  LI   TN+  +  D A +I + + Q+
Sbjct: 488 GNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNR--QMPDDAVRIYKKMIQN 541



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++  L  Q +     + +D+M+  G QP   ++  LI G     ++   +   
Sbjct: 441 NVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALL 500

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK  G   D   YN LI +    +  D A+RI+++M +  ++P   TY  ++ +    
Sbjct: 501 KEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYT 560

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCY----AGLITAHTNKIPRADDTATKIIELVEQ 211
              +   A+ ++M   G   D   Y     GLI     +  R+++    + E++E+
Sbjct: 561 RNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLI-----RHGRSEEACRYLEEMIEK 611



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 50/114 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M   G  P    +  LI    K  ++++   + D+M  +G  PD AVY  LI+  G
Sbjct: 429 LFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFG 488

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
             K  D+   + +EMK+     +G+TY  L+         D    I + M   G
Sbjct: 489 NQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNG 542


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    +A  YNT++    ++    +     D+M+  G+ PT   ++SLI      
Sbjct: 315 EEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFME 374

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  +      +++  G  PD   YN LI+   +C N+ +A  + +EM    +KP  +TY
Sbjct: 375 QRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY 434

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             LL+  +   ++     + + +T+ G   D   +  LI  H
Sbjct: 435 TSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGH 476



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 83/174 (47%), Gaps = 2/174 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+    ++  Y ++++ +  Q R      ++++M+  G++P+  ++++LI G      L 
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
               ++D+M   G  P ++ YN LI      + +D+A  + +E+++  + P+  TY  L+
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAHTNKIPRADDTATKI 205
           N           + +  +M A+G    K  Y  L  + +  N++  ADD   KI
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI 457



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 84/170 (49%), Gaps = 10/170 (5%)

Query: 30  EEYARRNYANNASEYNTVVTS---LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E   +  + +A  YN ++       + ++ FLL   +D+M+  G++PT+  + SL+   
Sbjct: 385 KEIQEKGISPDAITYNILINGYCRCANAKKAFLL---HDEMLASGIKPTKKTYTSLLHVL 441

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKP 144
            K +R+++      ++ + G LPD  ++N LI   G C NS+   A  + ++M + +V P
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDAIMFNALID--GHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +  T+  ++      G+++    +  +M   G   D   +  LI+ ++ +
Sbjct: 500 DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++     + +    R+++D+M   G++P    F++LI G  +   ++D F  R++M 
Sbjct: 504 FNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML 563

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             GF P V  YN L+   G CKN   D A  + +EM    + P+  TY  L+   A
Sbjct: 564 DTGFNPTVLTYNALVQ--GLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 2/153 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT+V    S  R      +   M    ++P    + SLI G  K  RL++     
Sbjct: 255 NIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIF 314

Query: 100 DQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           ++M   G  P   +YN LI   C K  N D A    +EM K  + P   TY  L++A   
Sbjct: 315 EEMVQKGLRPSAVIYNTLIDGFCNK-GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFM 373

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             + D    +++++   G   D   Y  LI  +
Sbjct: 374 EQRTDEAECMIKEIQEKGISPDAITYNILINGY 406



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 7/188 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R    ++   +N ++  L  + +    +D    M   GV+P    +++++ G     
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           R++        MK     PD   Y  LIS  G CK    ++A +IFEEM +  ++P+   
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLIS--GMCKQGRLEEASKIFEEMVQKGLRPSAVI 328

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G LD   A   +M   G       Y  LI A   +  R D+    I E+
Sbjct: 329 YNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFME-QRTDEAECMIKEI 387

Query: 209 VEQSKGWS 216
             Q KG S
Sbjct: 388 --QEKGIS 393



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/168 (19%), Positives = 74/168 (44%)

Query: 24  VTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
           + SA  +E  ++  +   S YN+++ +L  ++R      +  ++   G+ P    ++ LI
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
            G  + +  +  F   D+M A+G  P    Y  L+ V  K     +A  +F+++    V 
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           P+   +  L++   +   +   + +++DM       D+  +  ++  H
Sbjct: 464 PDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 57/279 (20%), Positives = 114/279 (40%), Gaps = 18/279 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + +  M   GV PT +  +SL+   +K +R +  +    +M        V  +N +I+V 
Sbjct: 172 ECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVL 231

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A      M+   VKPN  TY  +++   ++G+++   AI+  M       D 
Sbjct: 232 CKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDS 291

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV------ETSGNNAENEMMGVSKE 235
           F Y  LI+    K  R ++ +    E+V++    S+V      +   N    +M    K+
Sbjct: 292 FTYGSLISGMC-KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKD 350

Query: 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIV 295
           E+          ++G  +S  ++ Y+   HA    +     E +++ +++   SPD    
Sbjct: 351 EML---------KKG--ISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITY 399

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
              I  Y    +      + ++ + S   P  + Y +L+
Sbjct: 400 NILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL 438



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
           F LL+D+ D M    V P    F++++ G  +  ++++     D+MK  G  PD   +N 
Sbjct: 486 FELLKDM-DRM---KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           LIS   +  +   A R+  EM      P   TY  L+       + D    ++++M + G
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKG 601

Query: 177 AGLDKFCYAGLI 188
              D   Y  LI
Sbjct: 602 MTPDDTTYFTLI 613


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 269 SQSLSPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 327 LDTAFEHRKRMIQENIRLDDVAYTALISG 355



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 24/285 (8%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V+D +   G++P+   +++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+ 
Sbjct: 156 QSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN- 214

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK S  D A  +F+EM    + PNG T+  L++     G++D    I + M +    
Sbjct: 215 -GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 179 LDKFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE 236
            D   Y  LI     K  + +A D   ++       KG    + +     +   G  KE 
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHDLIDEM-----SMKGLKPDKFTYTTLID---GCCKEG 325

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPD 291
             +L TA + HR+   +   + +  VA+ A     C E + V A + L EML    K PD
Sbjct: 326 --DLDTA-FEHRK-RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK-PD 380

Query: 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +      I  +   GD+  G K+ ++   +   P    Y  L+ G
Sbjct: 381 IGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 64/165 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   + P    +++LI G  K 
Sbjct: 230 DEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+      D+M   G  PD   Y  LI  C K  + D A    + M +  ++ +   Y
Sbjct: 290 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 349

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M + G   D   Y  +I     K
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKK 394



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M + G++P +  + +LI G  K   L   F  R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMI 338

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM    +KP+  TY  ++N     G +
Sbjct: 339 QENIRLDDVAYTALISGLCQEGRSVD-AEKMLREMLSVGLKPDIGTYTMIINEFCKKGDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 WKGSKLLKEMQRNG 411


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   + + Y  VV + + +        VYDD+  DGV+P    F +L+        ++  
Sbjct: 467 NVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKA 526

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           F     MK  G  P   VY+ L+ VC    N ++A+ ++++++   ++P   T+  L+ A
Sbjct: 527 FSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTA 586

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              A Q     +I++D+  +G   ++  Y+ L+ A
Sbjct: 587 LCEANQFTRALSILQDVKNSGIMPNQISYSILLRA 621



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 10/194 (5%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  H K + GAL     + S        R    +   Y +++++     +  LL  
Sbjct: 300 MLLSVCCHAKDIDGALRVLALLES--------RGLKADCMFYTSLISACAKAGKVDLLFQ 351

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++ +M + G++     F ++I G  +  +L   F     M +    PD  ++N LI+ C 
Sbjct: 352 IFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNVKPDRVIFNTLINACT 411

Query: 123 KCKNSDQAIRIFEEMK--KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           +     +A  +  +MK     +KP+  TY  L++ACA AG++D    + ++M  +     
Sbjct: 412 RAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGS 471

Query: 181 KFCYAGLITAHTNK 194
             CY  ++ A + K
Sbjct: 472 PACYTAVVHACSQK 485



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG--FLPDVAVYNYLISVC 121
           Y  M+   V+P R +F++LI    +   +Q  F     MKA      PD   Y  LIS C
Sbjct: 388 YGIMISKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISAC 447

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            +    D+A+ +++ M++  VK +   Y  +++AC+  G +D    +  D+   G   D+
Sbjct: 448 ARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDE 507

Query: 182 FCYAGLITA--HTNKIPRA 198
             ++ L+ A  H   I +A
Sbjct: 508 VFFSALVDAAGHAQDIEKA 526



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 119/303 (39%), Gaps = 15/303 (4%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +++ G   D   Y  LIS C K    D   +IF EM+   ++ N  T+  +++ CA AGQ
Sbjct: 321 LESRGLKADCMFYTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQ 380

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIELVEQSKGWSSVE 219
           L   +     M +     D+  +  LI A T    + RA D       L +     + ++
Sbjct: 381 LPKAFGAYGIMISKNVKPDRVIFNTLINACTRAGAVQRAFDV------LTDMKAEATPIK 434

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
                    +   ++    +     Y + R   +      Y    HAC++  +V     +
Sbjct: 435 PDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLV 494

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE-GAM 338
            + LKKD   PD       +    H+ DI+    +  +       P A +Y++L+   + 
Sbjct: 495 YDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSN 554

Query: 339 FGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI 398
            G   K +++ QD       R+  L P + +   L+ A  ++  +T A  I   ++   I
Sbjct: 555 LGNWEKALEVYQDI------RSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNSGI 608

Query: 399 TPS 401
            P+
Sbjct: 609 MPN 611



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           ++D F F   M+    L     Y  L+SVC   K+ D A+R+   ++   +K +   Y  
Sbjct: 279 VEDAFAFAKLMREFSTLQH---YTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTS 335

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRA 198
           L++ACA AG++D ++ I  +M  AG   +   +  +I   A   ++P+A
Sbjct: 336 LISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKA 384



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY +M    V+ +   + +++    +   +       D +K +G  PD   ++ L+   
Sbjct: 458 EVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAA 517

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G  ++ ++A  I   MKK  +KP    Y  L+  C+  G  +    + +D+ ++G     
Sbjct: 518 GHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTV 577

Query: 182 FCYAGLITA--HTNKIPRA 198
             +  L+TA    N+  RA
Sbjct: 578 STFNALMTALCEANQFTRA 596



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 10/156 (6%)

Query: 44  YNTVVTSLTS----QRRFFLLRDVYDDMMLDG--VQPTRDLFHSLIVGTMKGSRLQDTFF 97
           +NT++ + T     QR F    DV  DM  +   ++P    + +LI    +   +     
Sbjct: 403 FNTLINACTRAGAVQRAF----DVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALE 458

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M+ +      A Y  ++  C +  N D A+ +++++KK  VKP+   +  L++A  
Sbjct: 459 VYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAG 518

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            A  ++  ++I+ +M   G       Y+ L+   +N
Sbjct: 519 HAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSN 554



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY D+   G+QPT   F++L+    + ++          +K +G +P+   Y+ L+  C
Sbjct: 563 EVYQDIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNSGIMPNQISYSILLRAC 622

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPN 145
            K K +D A+ ++       +KPN
Sbjct: 623 EKEKMADMALDLYMTALSEGIKPN 646


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P+  ++++ I G MKG   Q      ++MK +   P  A Y  LI++ G
Sbjct: 225 VFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYG 284

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K   S  A+++F EM+  + KPN  T+  L+NA A  G  +    I   +  AG   D +
Sbjct: 285 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVY 344

Query: 183 CYAGLITAHT 192
            Y  L+ A++
Sbjct: 345 AYNALMEAYS 354



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 64/157 (40%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R ++  +   YN ++ +   +  +      Y +++     PT D +  L+        L+
Sbjct: 161 RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLE 220

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +M+  GF P   VYN  I    K  ++ +A+ IFE MK+   +P+  TY  L+
Sbjct: 221 KAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLI 280

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           N    A +      +  +M +     +   +  L+ A
Sbjct: 281 NLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNA 317



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 57/121 (47%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ +   G++P    +++L+    +             M+  G  PD A YN ++   
Sbjct: 329 EIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 388

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+    + A  +FE MK+  + P  ++++ LL+A + AG++     IV  M  +G   D 
Sbjct: 389 GRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDT 448

Query: 182 F 182
           F
Sbjct: 449 F 449



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +R+++ F     + A   +PDV  +   I    + K  ++ + +FEEM      P+G T 
Sbjct: 500 ARMEELF---RSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTA 556

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
             LL+AC+   Q+  V  ++R M
Sbjct: 557 KVLLSACSNGDQIQEVTTVIRTM 579



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 19/300 (6%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           + F PDV  YN LI   G+     +A   + E+ +    P   TY  LL A   +G L+ 
Sbjct: 162 SSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEK 221

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVEQSKGWSSVETSG 222
             A+  +M   G       Y     A+ + + +  DT  A +I E +++ +   S  T+ 
Sbjct: 222 AEAVFAEMRKYGFPPSAVVY----NAYIDGLMKGGDTQKAVEIFERMKRDRCQPS--TAT 275

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
                 + G + +    L    +   R       +  +    +A A     +  E + E 
Sbjct: 276 YTMLINLYGKASKSYMALKV--FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQ 333

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE--DYICSEKFPPAELYATLVEGAMFG 340
           L++    PDVY     +  Y  +G      ++F    ++  E  P    Y  +V+     
Sbjct: 334 LQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE--PDRASYNIMVD----A 387

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
           Y   G+      +  +  R + ++P M S +LL++A  ++G       I + M    I P
Sbjct: 388 YGRAGLHEDAQAVFEVMKR-LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 446


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 20/281 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +    L + V+D +   G++PT   F++L+ G ++   L + F  ++ M+
Sbjct: 139 FNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQ 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  D A  +F EM    + PNG T+  L++     G+
Sbjct: 199 ASGVQPDVYTYSVLIN--GLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVE 219
           +D    I + M +     D   Y  LI     K  + +A D   ++       KG    +
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM-----SMKGLKPDK 311

Query: 220 TSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAFHA--CAELKDVQAM 276
            +     +   G  KE   +L TA EY  R      RL  V + A  +  C E + V A 
Sbjct: 312 VTYTTLID---GSCKEG--DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 367 KMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLMKE 406



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLMKEMQRDG 411



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   + T++       R  L  ++Y  M+   + P    +++LI G  K   L+      
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  PD   Y  LI   G CK  D   A    + M K  ++ +   Y  L++   
Sbjct: 300 DEMSMKGLKPDKVTYTTLID--GSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G+      ++R+M + G   +   Y  +I     K
Sbjct: 358 QEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKK 394


>gi|255086920|ref|XP_002505383.1| predicted protein [Micromonas sp. RCC299]
 gi|226520653|gb|ACO66641.1| predicted protein [Micromonas sp. RCC299]
          Length = 175

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R  A N    + ++ +    +++    DV+ +M  DGV+     + +LI    KG +L  
Sbjct: 27  RGVAANTITCSALINACGKSKQWEKALDVFREMKADGVEANIFTYSALISACAKGRQLDK 86

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 + + +G  PD   Y  +I+ C K K  D+A+ IF +M+   V  N  TY  +L+
Sbjct: 87  ALEVFRECQVSGVEPDAITYGTVIAACEKGKRCDEALDIFRQMRAKNVDANVITYNSVLS 146

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           AC  AG+ D    I   M   G   DK
Sbjct: 147 ACDRAGRADDALDIFAQMRKEGVKPDK 173



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y  M   GV        +LI    K  + +       +MKA+G   ++  Y+ LIS C
Sbjct: 19  ELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMKADGVEANIFTYSALISAC 78

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K +  D+A+ +F E +   V+P+  TY  ++ AC    + D    I R M A     + 
Sbjct: 79  AKGRQLDKALEVFRECQVSGVEPDAITYGTVIAACEKGKRCDEALDIFRQMRAKNVDANV 138

Query: 182 FCYAGLITAHTNKIPRADD 200
             Y  +++A  ++  RADD
Sbjct: 139 ITYNSVLSA-CDRAGRADD 156



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%)

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           +  LI  CG+    D+A+ +++ MK   V  N  T   L+NAC  + Q +    + R+M 
Sbjct: 1   FTTLIKTCGRSGGWDKALELYQAMKSRGVAANTITCSALINACGKSKQWEKALDVFREMK 60

Query: 174 AAGAGLDKFCYAGLITA 190
           A G   + F Y+ LI+A
Sbjct: 61  ADGVEANIFTYSALISA 77


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 213 YSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 272

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +K +  TY  L++ C   G 
Sbjct: 273 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGD 330

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 331 LDAAFEHRKRMIQENIRLDDVAYTALISG 359



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 26/286 (9%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V+D +   G++P+   +++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+ 
Sbjct: 160 QSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLIN- 218

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK S  D A  +F+EM    + PNG T+  L++     G++D    I + M +    
Sbjct: 219 -GLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 277

Query: 179 LDKFCYAGLITAHTNK--IPRADDTATKI-IELVEQSKGWSSVETSGNNAENEMMGVSKE 235
            D   Y  LI     K  + +A D   ++ ++ ++  K   +    G   E ++      
Sbjct: 278 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDL------ 331

Query: 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSP 290
                  A + HR+   +   + +  VA+ A     C E + V A + L EML    K P
Sbjct: 332 ------DAAFEHRK-RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK-P 383

Query: 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           D       I  +   GD+  G K+ +D   +   P    Y  L+ G
Sbjct: 384 DTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M + G++  +  + +LI G  K   L   F  R +M 
Sbjct: 283 YNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMI 342

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM    +KP+  TY  ++N     G +
Sbjct: 343 QENIRLDDVAYTALISGLCQEGRSVD-AEKMLREMLSVGLKPDTXTYTMIINEFCKKGDV 401

Query: 163 DPVYAIVRDMTAAG 176
                +++DM   G
Sbjct: 402 WKGSKLLKDMQRNG 415



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 63/165 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   + P    +++LI G  K 
Sbjct: 234 DEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 293

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+      D+M   G   D   Y  LI  C K  + D A    + M +  ++ +   Y
Sbjct: 294 GDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAY 353

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M + G   D   Y  +I     K
Sbjct: 354 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKK 398


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 11/287 (3%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N VV  L   + ++    V+      GV+P   +  +LI     G RL         M+ 
Sbjct: 186 NVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEK 245

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G    +  +N L+  CG+C + D A+ +FEEM+K  + P+  T+  L++A  AAG  D 
Sbjct: 246 AGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDR 305

Query: 165 VYAIVRDMTAAG--AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
             + +  M A G   GL ++       A   K PR      ++  ++EQ      ++   
Sbjct: 306 AQSFIDMMQARGFSIGLHEYIEMQWACARARK-PREAYGLFQV--MLEQG---YELKLES 359

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
            NA       + +    + T  ++  +G  L+  +  +     ACA     +    +LE 
Sbjct: 360 YNALLCAYERTAQWEDAMRTFIWIQDKG--LTPDVMSWSSLISACANAGQAERALEVLER 417

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
           +K     P+V      ++ Y  +G+ +   ++F   + S   PP E+
Sbjct: 418 MKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDS-GCPPNEV 463



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 61/129 (47%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++  M+  G +   + +++L+    + ++ +D       ++  G  PDV  ++ LIS C 
Sbjct: 344 LFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACA 403

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
               +++A+ + E MK  + +PN  ++  LL A    G  +    I   M  +G   ++ 
Sbjct: 404 NAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEV 463

Query: 183 CYAGLITAH 191
            +  L++A+
Sbjct: 464 AWCSLLSAY 472



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 1/111 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-GFLPDVAVYNYLISVC 121
           V+  M+  G++P      +L+    KG  L+    F + M+   G  PD   Y  +   C
Sbjct: 554 VFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWAC 613

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
             C    +A++  + M+     P+   Y  L+N   A GQ+D    ++  M
Sbjct: 614 WTCGEWQRAVKYIDRMEMAGCTPDSVIYTTLINMYEANGQIDKAMQVLERM 664



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           QM  +G LP++  Y+ LI   G     ++A  +F+ M +  ++PN Q    LL A     
Sbjct: 522 QMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGK 581

Query: 161 QLDPVYAIVRDMTAA-GAGLDKFCYAGLITA 190
           +L+ V      M    G   DK+ YA +  A
Sbjct: 582 ELEKVIIFFESMEPQYGVEPDKYAYAAIFWA 612


>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Glycine max]
          Length = 647

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 22/307 (7%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  Y  +   YN ++ +L    +    + V++DM     +P    +  +I  T K S+  
Sbjct: 225 RHGYRLDIFGYNMLLDALAKDEKVCSYK-VFEDMKRRHCEPDVFTYTIMIRMTGKSSKTD 283

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +       M A G  P++  YN +I    K +  D+A+ +F +M + +++PN  TY  +L
Sbjct: 284 EALALFQAMLAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVIL 343

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           N   A G+L+ +  IV     +   ++K  YA  +    +K+  A +       +     
Sbjct: 344 NLLVAEGKLNKLDNIV---DISKKYINKQIYAYFVRT-LSKVGHASEAHRLFCNM----- 394

Query: 214 GWSSVETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            W+  +    +A   M+      G   E +  L     +H +G  ++    +Y+  F A 
Sbjct: 395 -WNFHDKGDKDACMSMLESLCSAGKMTEAIDLL---NKIHEKG--ITTDTIMYNTVFTAL 448

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
             LK +  +  L E +K+D   PD++     I  +  +G +D   K FE+   S+  P  
Sbjct: 449 GRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDV 508

Query: 328 ELYATLV 334
             Y +L+
Sbjct: 509 ISYNSLI 515



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 68/143 (47%)

Query: 46  TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105
           +++ SL S  +     D+ + +   G+     +++++     +  ++       ++MK +
Sbjct: 408 SMLESLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQD 467

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G  PD+  YN LIS  G+    D A++ FEE++  + KP+  +Y  L+N     G +D  
Sbjct: 468 GPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEA 527

Query: 166 YAIVRDMTAAGAGLDKFCYAGLI 188
           +   ++M   G   D   Y+ LI
Sbjct: 528 HMRFKEMQEKGLNPDVVTYSTLI 550



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV T+L   ++   + D+Y+ M  DG  P    ++ LI    +  R+     F ++++
Sbjct: 441 YNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELE 500

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   PDV  YN LI+  GK  + D+A   F+EM++  + P+  TY  L+       +++
Sbjct: 501 NSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVE 560

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT 189
               +  +M A        C   LIT
Sbjct: 561 MACRLFDEMLAEE------CTPNLIT 580



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 61/144 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S     R  +    ++++     +P    ++SLI    K   + +      +M+
Sbjct: 476 YNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQ 535

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI   GK    + A R+F+EM   E  PN  TY  LL+    +G+  
Sbjct: 536 EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLDCLERSGRTA 595

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   +   G   D   YA L
Sbjct: 596 EAVDLYAKLKQQGLTPDSITYAVL 619


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R  + +   Y  V+  L    R      ++ +M+   ++P    + +LI G  K 
Sbjct: 282 DEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKE 341

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++++ F   +QM   G  P++  Y  L     KC   D A  +  EM +  ++ N  TY
Sbjct: 342 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTY 401

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+N    AG +D    +++DM  AG   D   Y  L+ A+
Sbjct: 402 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 443



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 134/314 (42%), Gaps = 22/314 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    N   YN V+  L    +      V  +M+ +G+ P   ++ +LI G  K 
Sbjct: 212 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL 271

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +   +   D+M+     PD   Y  +I  CG C+     +A ++F EM    ++P+  
Sbjct: 272 GNVSSAYRLFDEMQKRKISPDFITYTAVI--CGLCQTGRVMEADKLFHEMVCKRLEPDEV 329

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKI 205
           TY  L++     G++   +++   M   G   +   Y    TA  + + +    DTA ++
Sbjct: 330 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTY----TALADGLCKCGEVDTANEL 385

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR---GGFLSRLLTVYHV 262
           +  + + KG      + N+  N   G+ K    N+  A  + +     GF    +T   +
Sbjct: 386 LHEMCR-KGLELNIYTYNSLVN---GLCKAG--NIDQAVKLMKDMEVAGFHPDAVTYTTL 439

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
               C   + V+A E L +ML ++ +   V + V+ N  C   SG +++G K+ +  +  
Sbjct: 440 MDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCM--SGMLEDGEKLLKWMLEK 497

Query: 322 EKFPPAELYATLVE 335
              P A  Y +L++
Sbjct: 498 GIMPNATTYNSLIK 511



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 57/149 (38%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y T++ +    R      ++   M+   +QPT   F+ L+ G      L+D     
Sbjct: 432 DAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLL 491

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M   G +P+   YN LI       N      I+  M    V P+G TY  L+     A
Sbjct: 492 KWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA 551

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +   + + RDM   G  L    Y  LI
Sbjct: 552 RNMKEAWFLHRDMVGKGFNLTVSSYNALI 580



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ YN+++     +       ++Y  M   GV P  + ++ LI G  K   +++ +F  
Sbjct: 502 NATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLH 561

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             M   GF   V+ YN LI    K K   +A  +FE+M++  +  + + Y
Sbjct: 562 RDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIY 611


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 8/254 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +M  +G+ PT  ++++ + G +K    +       +MK      +   Y  +I+V G
Sbjct: 229 VISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYG 288

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K      ++R+F EMK    KPN  TY  L+NA A  G  +    +  +M  AG   D +
Sbjct: 289 KANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 348

Query: 183 CYAGLITAHTNK-IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
            Y  L+ A++   +P+    A++I  L+E   G      S N   +      +  L+   
Sbjct: 349 AYNALMEAYSRAGLPQG---ASEIFSLMEH-MGCEPDRASYNILVD---AFGRAGLHQEA 401

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
            A +   +   +   +  + +   A A   +V   E ++  L K    PD + +   +  
Sbjct: 402 EAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNA 461

Query: 302 YLHSGDIDNGHKVF 315
           Y  +G +D+  ++F
Sbjct: 462 YGRAGRLDDMERLF 475



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 108/288 (37%), Gaps = 37/288 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V +   +       +V+++M   G +P    +++L+    +    Q      
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+  G  PD A YN L+   G+     +A   F+E+K+  ++P  ++++ LL+A A +
Sbjct: 371 SLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARS 430

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G +     ++  +  +G   D F    ++ A+  +  R DD   ++   +E+  G     
Sbjct: 431 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAY-GRAGRLDDM-ERLFAAMERGDG----- 483

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
                    + G      YN+    Y   R G+L R                    ME  
Sbjct: 484 --------AIAGAPDTSTYNVMVNAY--GRAGYLDR--------------------MEAA 513

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              L     + DV      I  Y    +     +VFE+ + +  +P A
Sbjct: 514 FRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDA 561



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 129/346 (37%), Gaps = 27/346 (7%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++ + F PD+  YN LI   G+ +   +A   +  + +    P   TY  LL A   +GQ
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ 222

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYA----GLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
           L     ++ +M   G       Y     GL+ A      R  + A ++ + +++ +  ++
Sbjct: 223 LHRAEGVISEMQRNGIPPTATVYNAYLDGLLKA------RCSEKAVEVYQRMKKERCRTN 276

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
            ET        + G + + + +L     +   G      +  Y    +A A     +  E
Sbjct: 277 TETY--TLMINVYGKANQPMSSLRVFREMKSVG--CKPNICTYTALVNAFAREGLCEKAE 332

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF---EDYICSEKFPPAELYATLV 334
            + E +++    PDVY     +  Y  +G      ++F   E   C    P    Y  LV
Sbjct: 333 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE---PDRASYNILV 389

Query: 335 EGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393
           +   FG    G+ Q A+     +  +   + P M S +LL++A  +SG       +   +
Sbjct: 390 DA--FGRA--GLHQEAEAAFQELKQQG--MRPTMKSHMLLLSAHARSGNVARCEEVMAQL 443

Query: 394 QARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLRGRP 439
               + P   A+ A  N         D  RL       D  + G P
Sbjct: 444 HKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAP 489



 Score = 44.7 bits (104), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           FR  + A G   DV  +   I    + K   Q +R+FEEM      P+  T   LL AC+
Sbjct: 514 FRS-LAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACS 572

Query: 158 AAGQLDPVYAIVRDM 172
              Q++ V AIVR M
Sbjct: 573 DERQVEQVKAIVRSM 587



 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 65/160 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R      A+ YN  +  L   R      +VY  M  +  +   + +  +I    K +
Sbjct: 232 EMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAN 291

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +   +     +MK+ G  P++  Y  L++   +    ++A  +FEEM++   +P+   Y 
Sbjct: 292 QPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYN 351

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L+ A + AG       I   M   G   D+  Y  L+ A
Sbjct: 352 ALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDA 391


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 13/307 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+ Y  +   YN ++ +L           V++DM      P    +  LI  + K 
Sbjct: 152 EEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKA 211

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R      F D+M + G + ++  +N +I   GK K  D+ I +  +M + + +PN  TY
Sbjct: 212 GRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTY 271

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              L+  A  GQL  +  ++ D+ +       + Y       +     A +   ++    
Sbjct: 272 SITLDILATEGQLHRLNEVL-DICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRM---- 326

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR--RGGFLSRLLTVYHVAFHAC 267
                W+S E    +A   M+ V       L   + +H     G ++  + +Y++ F A 
Sbjct: 327 -----WNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTD-VGMYNMVFSAL 380

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            +LK V  +  L + +K +   PDV+     I  Y   G +D   ++FE    S   P  
Sbjct: 381 GKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDV 440

Query: 328 ELYATLV 334
             Y +L+
Sbjct: 441 VTYNSLI 447



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           +G +K        F  D+MK NG +PDV  YN +IS  G+    D+A  +FE M+    K
Sbjct: 380 LGKLKQVSFISNLF--DKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCK 437

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           P+  TY  L+N     G LD  + + ++M   G   D F Y+ LI     +NK+  A
Sbjct: 438 PDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMA 494



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 51/112 (45%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +  ++   ++   +   F   ++M+  G+  D+  YN L+    K    DQA ++FE+MK
Sbjct: 131 YKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMK 190

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +    P+  TY  L+     AG+     +   +M + G  L+   +  +I A
Sbjct: 191 QKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEA 242



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M     +P    ++SLI    K   L +      +M+  G+ PDV  Y+ LI   
Sbjct: 426 ELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF 485

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK    + A  +F+EM      PN  TY  LL+     G+ +  + +   M   G   D 
Sbjct: 486 GKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDS 545

Query: 182 FCYAGL 187
             Y+ L
Sbjct: 546 ITYSIL 551



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L           ++ +M   G  P    +  LI    K ++++      D+M 
Sbjct: 443 YNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMI 502

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           + G  P++  YN L+    +   +++A +++E MK+  + P+  TY  L
Sbjct: 503 SEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551


>gi|110288710|gb|AAP52447.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215694798|dbj|BAG89989.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 735

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 133 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ 192

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKG
Sbjct: 193 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKG 247



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P ++ +N L+SVC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +
Sbjct: 105 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 164

Query: 169 VRDMTAAGAGLDKFCYAGLI 188
             +M +AG   +   Y+ LI
Sbjct: 165 FHEMVSAGIEPNVNTYSALI 184



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  + +   GAL     +  AG +         +   Y T++++     +   + +
Sbjct: 112 MLLSVCANSQDFDGALQVMVLLKEAGLKP--------DCKLYTTLISTCAKCGKVDAMFE 163

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 164 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 223

Query: 123 KCKNSDQAIRIFEEMK--------KYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM            + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 224 ESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 283

Query: 172 MTAAG 176
               G
Sbjct: 284 YNIKG 288



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 19/198 (9%)

Query: 5   QSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVT-----------SLTS 53
           + I   H +VG  +        AG  + AR  Y     EYN   T           SLT 
Sbjct: 249 KPILPDHVTVGALMKT---CIQAGQADRAREVY-KMLQEYNIKGTPEVYTIALRSCSLTG 304

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFLPDVA 112
              F L   +Y+DM   GVQP  ++F S +V     +R  D  F      +A G+     
Sbjct: 305 DLGFAL--KIYEDMNKIGVQPD-EMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTI 361

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+ L+  C   K+  +A+++FEE+K  ++ P       L+ A     Q+   + ++ +M
Sbjct: 362 AYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEM 421

Query: 173 TAAGAGLDKFCYAGLITA 190
              G   +   Y+ L  A
Sbjct: 422 KRLGVCPNMITYSVLFVA 439



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   +  C    +   A++I+E+M K  V+P+      L++    A + D  + I++D 
Sbjct: 292 VYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDA 351

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMG 231
            A G  +    Y+ L+ A  N    A D   K ++L E+ K    + T S  NA    + 
Sbjct: 352 RAKGYQVGTIAYSSLMGACCN----AKDW-KKALQLFEEIKSIKLMPTVSMMNALITALC 406

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
              + L +      + +R G    ++T Y V F AC    + Q    L E LK D
Sbjct: 407 DGDQVLKSFEVLSEM-KRLGVCPNMIT-YSVLFVACERNAEAQLGLDLFEQLKID 459



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/122 (18%), Positives = 54/122 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + Y      Y++++ +  + + +     +++++    + PT  + ++LI     G ++  
Sbjct: 354 KGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLK 413

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           +F    +MK  G  P++  Y+ L   C +   +   + +FE++K   +  N     CL  
Sbjct: 414 SFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTG 473

Query: 155 AC 156
            C
Sbjct: 474 LC 475


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 4/177 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           G      F   SA  EE   +N   +   +  ++  L    +    RD+ D M   GV P
Sbjct: 300 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
               +++L+ G  K  R+++   F ++M ++G +PD   Y  L+    +   +D A+++ 
Sbjct: 360 NVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV 419

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF----CYAGL 187
            E+K +   P+  TY  L++    +G+ +    ++ +M   G   D F    C++GL
Sbjct: 420 SELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGL 476



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 42  SEYNTVVTSLT----SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           ++YN V+ SL     + R   + R    +M  DGV PT   ++++I G  K + L     
Sbjct: 2   ADYNIVLQSLCRAGDTARALEIFRG---EMARDGVAPTIVTYNTIINGLCKSNDLGAGME 58

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             +++   G  PDV  YN LI    K  + ++A R+  +M      PN  TY  L+N   
Sbjct: 59  LFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLC 118

Query: 158 AAGQLDPVYAIVRDMT 173
             G++D    ++++MT
Sbjct: 119 KVGRIDEARELIQEMT 134



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN +V  L    R        ++M+  G  P    + SL+    + SR  D     
Sbjct: 360 NVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV 419

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            ++K+ G+ PD   YN L+    K   ++QAI + EEM     +P+  T+    +    +
Sbjct: 420 SELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRS 479

Query: 160 GQLDPVYAIVR---------DMTAAGAGLDKFCYAG 186
           G L     ++R         D T   + LD  C +G
Sbjct: 480 GNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSG 515



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 134/355 (37%), Gaps = 80/355 (22%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLN 154
            FR +M  +G  P +  YN +I+  G CK++D    + +FEE+ +    P+  TY  L++
Sbjct: 23  IFRGEMARDGVAPTIVTYNTIIN--GLCKSNDLGAGMELFEELVERGHHPDVVTYNTLID 80

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +   AG L+    +  DM++ G   +   Y+ LI     K+ R D+      EL++    
Sbjct: 81  SLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLC-KVGRIDEAR----ELIQ---- 131

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
                        EM   S + L N+ T         FL  L          C +    +
Sbjct: 132 -------------EMTRKSCDVLPNIIT------YNSFLDGL----------CKQSMTAE 162

Query: 275 AMETLLEMLKKD--RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           A E L+  L+    R SPD       I      G ID    VF+D I     P    Y  
Sbjct: 163 ACE-LMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNA 221

Query: 333 LVEG-----------AMF------GYTPKGMQL---------------AQDTLVNMNSRN 360
           LV G           AM       G TP  +                 A + L  M SR 
Sbjct: 222 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRG 281

Query: 361 I---FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
                L P   +  +L+A   K+G +  A+ +++ M A+ + P +    A  +GL
Sbjct: 282 CTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 122/351 (34%), Gaps = 54/351 (15%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R +  +   YNT++ SL         R ++ DM   G  P    +  LI G  K 
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 90  SRLQDTFFFRDQMKA------------NGFL---------------------------PD 110
            R+ +      +M              N FL                           PD
Sbjct: 121 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPD 180

Query: 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170
              ++ LI    KC   D+A  +F++M      PN  TY  L+N    A +++  +A++ 
Sbjct: 181 TVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 240

Query: 171 DMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENE-- 228
            M   G   D   Y+ L+ A           A+++ E +E   G +S   + N    +  
Sbjct: 241 SMVDKGVTPDVITYSVLVDAFCK--------ASRVDEALELLHGMASRGCTPNVLVPDKV 292

Query: 229 -----MMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                + G  K   +   +A +       L   +  +        +   V+A   +L+++
Sbjct: 293 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
                 P+V      +     SG I+   +  E+ + S   P +  Y +LV
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 403



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 3/142 (2%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P +  F+ LI G  K    +      ++M A    PDV  +  LI    K    + A  I
Sbjct: 289 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 348

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            + M    V PN  TY  L++    +G+++     + +M ++G   D   Y  L+ A   
Sbjct: 349 LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALC- 407

Query: 194 KIPRADDTATKIIELVEQSKGW 215
           +  R DD    + EL  +S GW
Sbjct: 408 RASRTDDALQLVSEL--KSFGW 427



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E AR   A     YNT++  L          +++++++  G  P    +++LI    K  
Sbjct: 27  EMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAG 86

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQT 148
            L++       M + G +P+V  Y+ LI+   K    D+A  + +EM  K  +V PN  T
Sbjct: 87  DLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 146

Query: 149 Y 149
           Y
Sbjct: 147 Y 147



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++        F     ++++M+   +QP    F +LI G  K  +++      D M 
Sbjct: 294 FNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMG 353

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  P+V  YN L+   G CK+   ++A +  EEM      P+  TY  L+ A   A +
Sbjct: 354 NLGVPPNVVTYNALVH--GLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASR 411

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            D    +V ++ + G   D   Y  L+
Sbjct: 412 TDDALQLVSELKSFGWDPDTVTYNILV 438


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           +G +K      + +  D+MKANG  PDV  YN +IS  G+    D+A  +FEEM     K
Sbjct: 192 LGKLKQVSFMSSLY--DKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCK 249

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           P+  TY  ++N     G LD  + + +DM   G   D F Y+ LI     +NK+  A
Sbjct: 250 PDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMA 306



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 146/345 (42%), Gaps = 30/345 (8%)

Query: 77  DLFHSLIVGTMKGSRLQDTFF--FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
           D +   I+  M G   + T F  F ++M + G + ++  YN +I   GK K  D+AI + 
Sbjct: 9   DAYTYTILIRMSGKAGKATKFVSFLEEMVSKGCVLNLIAYNTVIEALGKNKMVDKAIFML 68

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +M + + +PN  TY  +L+  A  GQL  +  I   +      L++  Y+ L+ A   K
Sbjct: 69  SKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEI---LDICSGHLNRSVYSYLVKALC-K 124

Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL-PTAEYVHRRGGFL 253
              A +  +    +      WSS E    +A   M+    E L N   TAE +       
Sbjct: 125 SGHASEAHSVFCRM------WSSHEKGDRDAFVSML----EALCNAEKTAEAIDLLHMMP 174

Query: 254 SRLLT----VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
            + +T    +Y++ F A  +LK V  M +L + +K +  +PDV+     I  +   G +D
Sbjct: 175 EKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVD 234

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGS 369
              ++FE+   S   P    Y      +M     K   L +  ++  + +     P + +
Sbjct: 235 KASELFEEMDDSSCKPDVITY-----NSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFT 289

Query: 370 DLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
             +L+    KS     A  ++D M A+   P++      YN L D
Sbjct: 290 YSILIECFGKSNKVDMACSLFDEMIAQGCVPNI----VTYNILLD 330



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S           +++++M     +P    ++S+I    K   L +       M+
Sbjct: 220 YNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQ 279

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G+ PDV  Y+ LI   GK    D A  +F+EM      PN  TY  LL+     G+  
Sbjct: 280 EKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKTR 339

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
             + +   +   G   D   Y+ L
Sbjct: 340 EAHKLYETLKQQGLAPDSITYSIL 363


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 133/325 (40%), Gaps = 31/325 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  + +   YN ++ +   + +FF   ++YD+M+  G+ P    ++S+I G  K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 373

Query: 90  SRL---QDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPN 145
            RL   +D F+    M   G  PDV  +  LI   CG  K  D  + +  EM +  +  N
Sbjct: 374 DRLDAAEDMFYL---MATKGCSPDVFTFTTLIDGYCGA-KRIDDGMELLHEMPRRGLVAN 429

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  L++     G L+    + + M ++G   D      L+    +     D  A ++
Sbjct: 430 TVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKD--ALEM 487

Query: 206 IELVEQSKGWSSVETSGNNAE--------------NEMMGVSKEELYNLPTAEYVHRRGG 251
            + +++SK         N  E              NE   +  EELY     E  HR  G
Sbjct: 488 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYE----EMPHR--G 541

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
            +   +T   +    C + +  +A +  + M  K   SP+V      I  Y  +G +D+G
Sbjct: 542 IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSF-SPNVVTFNTLINGYCKAGRVDDG 600

Query: 312 HKVFEDYICSEKFPPAELYATLVEG 336
            ++F +         A +Y TL+ G
Sbjct: 601 LELFCEMGRRGIVADAIIYITLIYG 625



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +       M 
Sbjct: 514 YNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG 573

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +  F P+V  +N LI+   K    D  + +F EM +  +  +   Y+ L+      G ++
Sbjct: 574 SKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNIN 633

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
               I ++M ++G   D      ++T   +K     + A  ++E ++ S G+
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNMLTGFWSK--EELERAVAMLEDLQMSVGY 683



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 1/161 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++ SL    R    ++++ +M   G+ P    ++S+IVG     R  D     
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M      PDV  YN LI+   K     +A  +++EM    + PN  TY  +++     
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQ 373

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +LD    +   M   G   D F +  LI  +     R DD
Sbjct: 374 DRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA-KRIDD 413



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D MM DG+QPT+  + +++ G  K G  +      
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  RDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           R   + +  +P+V +Y+ +I S+C   ++SD A  +F EM++  + P+  TY  ++    
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           ++G+      ++++M       D   Y  LI A   +
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 4/147 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++    S  R+     +  +M+   + P    +++LI   +K  +  +     D+M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEML 352

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G +P+   YN +I   G CK    D A  +F  M      P+  T+  L++    A +
Sbjct: 353 PRGIIPNTITYNSMID--GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 410

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +D    ++ +M   G   +   Y  LI
Sbjct: 411 IDDGMELLHEMPRRGLVANTVTYNTLI 437



 Score = 41.2 bits (95), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 27/242 (11%)

Query: 106 GFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  PDV  +  L+   G C      +A+  F +M +   +PN  T+  L+N     G++ 
Sbjct: 144 GLHPDVVTFTTLLH--GLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 164 PVYAIVRDM---------TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
              A++  M            G  +D  C  G   +  N + + ++ +  I  +V  S  
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             S+   G +++ + +    +E              G    L T   +    C+  +   
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQE-------------KGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A + L EML++ + SPDV      I  ++  G      +++++ +     P    Y +++
Sbjct: 309 AEQLLQEMLER-KISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 367

Query: 335 EG 336
           +G
Sbjct: 368 DG 369


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 12/254 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  +  +      R ++++M   G+ P    ++S+I G  K  RL DT  F ++MK
Sbjct: 133 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK 192

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  YN LI+   K       +  + EMK   +KPN  +Y  L++A    G + 
Sbjct: 193 DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQ 252

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG- 222
                  DM   G   +++ Y  LI A+  KI    D      E+++    W+ V  +  
Sbjct: 253 QAIKFYVDMRRVGLVPNEYTYTSLIDANC-KIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 311

Query: 223 --NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                + E M  ++E    + TA  +          L  Y+   H   + K++     LL
Sbjct: 312 IDGLCDAERMKEAEELFGKMDTAGVIPN--------LASYNALIHGFVKAKNMDRALELL 363

Query: 281 EMLKKDRKSPDVYI 294
             LK     PD+ +
Sbjct: 364 NELKGRGIKPDLLL 377



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           +RFF       DM+  G +PT   ++ +I    K   ++      ++MK  G +PD   Y
Sbjct: 115 KRFF------KDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTY 168

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N +I   GK    D  +  FEEMK    +P+  TY  L+N     G+L       R+M  
Sbjct: 169 NSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG 228

Query: 175 AGAGLDKFCYAGLITA 190
            G   +   Y+ L+ A
Sbjct: 229 NGLKPNVVSYSTLVDA 244



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 60/127 (47%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M+  GV+     + +LI G     R+++      +M   G +P++A YN LI    K 
Sbjct: 294 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 353

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           KN D+A+ +  E+K   +KP+   Y   +    +  +++    ++ +M   G   +   Y
Sbjct: 354 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 413

Query: 185 AGLITAH 191
             L+ A+
Sbjct: 414 TTLMDAY 420



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 51/121 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++  L    R     +++  M   GV P    +++LI G +K   +       
Sbjct: 304 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 363

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +++K  G  PD+ +Y   I      +  + A  +  EMK+  +K N   Y  L++A   +
Sbjct: 364 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 423

Query: 160 G 160
           G
Sbjct: 424 G 424



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 57/149 (38%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T+V +   +         Y DM   G+ P    + SLI    K   L D F   
Sbjct: 234 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 293

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G   +V  Y  LI      +   +A  +F +M    V PN  +Y  L++    A
Sbjct: 294 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 353

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +D    ++ ++   G   D   Y   I
Sbjct: 354 KNMDRALELLNELKGRGIKPDLLLYGTFI 382



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N  +P   V++ L SV       ++AI+ F +MK++ V P  ++   LL+  A  G+ D 
Sbjct: 54  NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 113

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
           V    +DM  AGA    F Y  +I
Sbjct: 114 VKRFFKDMIGAGARPTVFTYNIMI 137



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 50/124 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ +  ++  L    +      +++ M+  G+ P R  + SL+ G  K   + +    R
Sbjct: 480 NAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 539

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G   D+  Y  L+     C    +A    EEM    + P+    + +L      
Sbjct: 540 DKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 599

Query: 160 GQLD 163
           G +D
Sbjct: 600 GCID 603



 Score = 38.1 bits (87), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 53/121 (43%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+Q    +F ++I G  K ++++      +QM   G +PD   Y  L+    K  N  +A
Sbjct: 476 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 535

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + + ++M +  +K +   Y  L+   +   QL    + + +M   G   D+     ++  
Sbjct: 536 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKK 595

Query: 191 H 191
           H
Sbjct: 596 H 596


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L   +      D+Y +M++ G+ P    + +LI G      L++ F   ++MK
Sbjct: 204 YTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMK 263

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  +N LI    K    D+A+ +FEEMK   + PN  TY  L++       L+
Sbjct: 264 LKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLE 323

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              A+ + M   G   + + Y  L+ A
Sbjct: 324 RAIALCKKMKEQGIQPNVYSYTILLDA 350



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 6/273 (2%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M+L    P   LF++++   +K  R         Q + NG  PD+   + LI+    
Sbjct: 49  FNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCH 108

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             +   A  +F  + K    PN  T   L+      G++         + A G  LD+  
Sbjct: 109 LTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVS 168

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
           Y  LI    N + +A +T   +  L+ + +G  SV+         +  + K +L      
Sbjct: 169 YGTLI----NGLCKAGETKA-VARLLRKLEG-HSVKPDLVMYTTIIHCLCKNKLLGDACD 222

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
            Y       +S  +  Y    H    + +++   +LL  +K    +PDVY     I    
Sbjct: 223 LYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALA 282

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             G ID    +FE+      FP    Y +L++G
Sbjct: 283 KEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDG 315



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 64/157 (40%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R Y  NA   NT++  L            +D ++  G Q  +  + +LI G  K    +
Sbjct: 124 KRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETK 183

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +++ +   PD+ +Y  +I    K K    A  ++ EM    + PN  TY  L+
Sbjct: 184 AVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLI 243

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +     G L   ++++ +M       D + +  LI A
Sbjct: 244 HGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDA 280



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 52/127 (40%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
            V+ +++  G  P     ++LI G      ++    F D++ A GF  D   Y  LI+  
Sbjct: 117 SVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGL 176

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K   +    R+  +++ + VKP+   Y  +++       L     +  +M   G   + 
Sbjct: 177 CKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNV 236

Query: 182 FCYAGLI 188
           F Y  LI
Sbjct: 237 FTYTTLI 243



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 2/176 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +N   +   +N ++ +L  + +      ++++M    + P    + SLI G  K  
Sbjct: 261 EMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNH 320

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L+       +MK  G  P+V  Y  L+    K    + A + F+ +       N +TY 
Sbjct: 321 HLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYN 380

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            ++N    AG    V  +   M   G   +   +  +I A   K    +D A K +
Sbjct: 381 VMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEK--DENDKAEKFL 434



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 4/149 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +N   N   Y +++  L           +   M   G+QP    +  L+    KG
Sbjct: 295 EEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKG 354

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            RL++   F   +   G+  +V  YN +I+  G CK       + +  +M+     PN  
Sbjct: 355 GRLENAKQFFQHLLVKGYHLNVRTYNVMIN--GLCKAGLFGDVMDLKSKMEGKGCMPNAI 412

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           T+  ++ A     + D     +R+M A G
Sbjct: 413 TFKTIICALLEKDENDKAEKFLREMIARG 441


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 116/295 (39%), Gaps = 10/295 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +   Q       ++ D M   G++P    ++++I G  K  +        D+M 
Sbjct: 396 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 455

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD A YN L+  C +  N   A RIF+EM    V P+  ++  L+   +  G LD
Sbjct: 456 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 515

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV--ETS 221
                 RDM  AG   D   Y  LI         ++    +  E++EQ      V   T 
Sbjct: 516 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR-DEMLEQGCXLDVVTYNTI 574

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N    E M    +EL+   T      RG F       +    +   +  ++    TL E
Sbjct: 575 LNGLCKEKMLSEADELFTEMT-----ERGVFPD--FYTFTTLINGYXKDGNMNKAVTLFE 627

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           M+ +    PDV      I  +    +++  ++++ D I    +P    Y  L+ G
Sbjct: 628 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 682



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 144/400 (36%), Gaps = 47/400 (11%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     N    N ++ +L   ++    +    DM   GV P    +++LI    + 
Sbjct: 347 QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQ 406

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             L++ F   D M   G  P V  YN +I+  G CK     +A  + +EM K  + P+  
Sbjct: 407 GLLEEAFELMDSMSGKGLKPCVFTYNAIIN--GLCKTGKYLRAKGVLDEMLKIGMSPDTA 464

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  LL  C     +     I  +M + G   D   ++ LI              +K   
Sbjct: 465 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI-----------GLLSKNGC 513

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
           L +  K +  ++ +G   +N         +Y +    +   R G +S  L V        
Sbjct: 514 LDQALKYFRDMKNAGLAPDN--------VIYTILIGGFC--RNGVMSEALKVRDEMLEQG 563

Query: 268 AELKDVQAMETLLEMLKKDRK----------------SPDVYIVMQNIRCYLHSGDIDNG 311
             L DV    T+L  L K++                  PD Y     I  Y   G+++  
Sbjct: 564 CXL-DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKA 622

Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDL 371
             +FE  I     P    Y TL++G   G     M+   +   +M SR I+  P   S  
Sbjct: 623 VTLFEMMIQRNLKPDVVTYNTLIDGFCKG---SEMEKVNELWNDMISRRIY--PNHISYG 677

Query: 372 LLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           +L+      G  + A  +WD M  +    ++        G
Sbjct: 678 ILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 717



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 1/162 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           +RR Y N+ S Y  ++    +         ++D+M+  G + T    ++++ G  +    
Sbjct: 666 SRRIYPNHIS-YGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 724

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                F   M   G +PD   YN LI+   K +N D+A  +  +M+   + P+  TY  +
Sbjct: 725 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 784

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           LN  +  G++     I+  M   G   D+  Y  LI  H  +
Sbjct: 785 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ 826



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + +       NT+V             +   +M+L G+ P    +++LI G +K 
Sbjct: 697 DEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 756

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F   ++M+ +G LPDV  YN +++   +     +A  I  +M +  V P+  TY
Sbjct: 757 ENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTY 816

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             L+N       L   + +  +M   G
Sbjct: 817 TSLINGHVTQNNLKEAFRVHDEMLQRG 843



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   +RN   +   YNT++           + ++++DM+   + P    +  LI G    
Sbjct: 627 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 686

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + + F   D+M   GF   +   N ++    +  N+ +A      M    + P+G TY
Sbjct: 687 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 746

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE 207
             L+N       +D  +A+V  M  +G   D   Y  ++   +   ++  A+    K+IE
Sbjct: 747 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 806



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 7/189 (3%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGA-EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           ++ ++  + G      ++ + G  +E  +   + + + YN ++              ++D
Sbjct: 428 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 487

Query: 66  DMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           +M   GV P    F +LI + +  G   Q   +FRD MK  G  PD  +Y  LI   G C
Sbjct: 488 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD-MKNAGLAPDNVIYTILIG--GFC 544

Query: 125 KNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +N    +A+++ +EM +     +  TY  +LN       L     +  +MT  G   D +
Sbjct: 545 RNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 604

Query: 183 CYAGLITAH 191
            +  LI  +
Sbjct: 605 TFTTLINGY 613



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++   + Q R      +   M+  GV P R  + SLI G +  + L++ F   D+M 
Sbjct: 781 YNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 840

Query: 104 ANGFLPD 110
             GF+PD
Sbjct: 841 QRGFVPD 847


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 157/392 (40%), Gaps = 39/392 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           R+   S   EE + R    +   Y  ++ SL  + +      V D MM  G++P    ++
Sbjct: 198 RWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYN 257

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
            LI    K   +++    R+ M   G   D   YN LI+        D+A+ + EEM   
Sbjct: 258 VLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHG 317

Query: 141 E--VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCY----AGLITAHTN 193
           E  V+PN  T+  +++     G++   +  VRDM A  G   +   +     GL+  H  
Sbjct: 318 ETMVEPNVVTFNSVIHGLCKTGRMRQAFQ-VRDMMAENGCACNLVTFNLLIGGLLRVHKV 376

Query: 194 K--IPRADDTATKIIE--------LVEQ-SKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
           K  +   D+ A+  +E        L+    K W         ++    G+  E ++ +P 
Sbjct: 377 KKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPL 436

Query: 243 AEYVHRRG------GFLSRL-------LTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
              +  +G       F   +       +  Y    H    L+D ++ E  L+ +  +   
Sbjct: 437 LAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLI 496

Query: 290 PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQL 348
           PD       I  + +SGD+    +V +    S   P   ++ +L++G    G T K ++L
Sbjct: 497 PDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLEL 556

Query: 349 AQDTLVNMNSRNIFLSPRMGSDL--LLVAAGE 378
            ++    M +++I L  ++ S +   LVA  E
Sbjct: 557 IRE----MTAKDIALDSKIISTIYTCLVANNE 584



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 40  NASEYNTVVTSLTSQ-----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +A  YNTV+ +L  Q        FLLR     +M    +PT   + +L+       R   
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLR-----VMAHETRPTAVSYTTLMRALCAERRTGQ 131

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  M+A+G  PDV  Y  LI       + D+A+ +  EM +  ++PN   Y CLL 
Sbjct: 132 AVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQ 191

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
               AG+ + V  +  +M+  G   D   Y GLI +     K+ +A     K++E
Sbjct: 192 GYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMME 246



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L          ++  +M   G++P   ++  L+ G  K  R +      ++M 
Sbjct: 151 YGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMS 210

Query: 104 ANGFLPDVAVYNYLI-SVC--GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G  PDV +Y  LI S+C  GK K + Q   + ++M +  ++PN  TY  L+N+    G
Sbjct: 211 GRGIEPDVVMYTGLIDSLCREGKVKKATQ---VMDKMMERGLEPNVVTYNVLINSMCKEG 267

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +    ++  +M   G  LD   Y  LIT  +  +    D A  ++E  E   G + VE
Sbjct: 268 SVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEM--DEAMGLLE--EMIHGETMVE 322



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 9/178 (5%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           GG L    F+    A E         A  Y T++ +L ++RR      +  DM   GV+P
Sbjct: 92  GGCLDAALFLLRVMAHETR-----PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRP 146

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIR 132
               + +LI G    + +        +M  +G  P+V VY+ L+   G CK    +   +
Sbjct: 147 DVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQ--GYCKAGRWECVSK 204

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +FEEM    ++P+   Y  L+++    G++     ++  M   G   +   Y  LI +
Sbjct: 205 VFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINS 262


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 28/303 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y ++++ +  + R      ++D M+  G+ P    +++LI G      L+  F +RD+M 
Sbjct: 300 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 359

Query: 104 ANGFLPDVAVYNYLISVC---GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G +P V+ YN L+      G+   +D  I+   EM+K  + P+  TY  L+N  +  G
Sbjct: 360 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIK---EMRKKGIIPDAITYNILINGYSRCG 416

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIEL-----VEQSK 213
                + +  +M + G       Y  LI   +  N++  ADD   KI++      V    
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 476

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
                  +  N E   M + + +  ++P  E            +T   +    C E K V
Sbjct: 477 AMVDGHCANGNVERAFMLLKEMDRKSVPPDE------------VTFNTLMQGRCREGK-V 523

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL-YAT 332
           +    LL+ +K+    PD       I  Y   GDI +  +V  D + S  F P  L Y  
Sbjct: 524 EEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV-RDEMLSIGFNPTLLTYNA 582

Query: 333 LVE 335
           L++
Sbjct: 583 LIK 585



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   YNT++   +S+      R + D M + G++P    + SLI G  K  RL++  
Sbjct: 258 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEAS 317

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLN 154
              D+M   G +P+   YN LI   G C   D  +A    +EM K  + P+  TY  L++
Sbjct: 318 GLFDKMVEIGLVPNAVTYNTLID--GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 375

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           A    G++     ++++M   G   D   Y  LI  ++
Sbjct: 376 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 413



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R++   +   +NT++     + +    R + D+M   G++P    +++LI G  + 
Sbjct: 496 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 555

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++D F  RD+M + GF P +  YN LI    K +  D A  + +EM    + P+  TY
Sbjct: 556 GDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 615

Query: 150 VCLL 153
           + L+
Sbjct: 616 LSLI 619



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 4/150 (2%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           +R F LL++    M    V P    F++L+ G  +  ++++     D+MK  G  PD   
Sbjct: 489 ERAFMLLKE----MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHIS 544

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           YN LIS  G+  +   A R+ +EM      P   TY  L+       + D    ++++M 
Sbjct: 545 YNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMV 604

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
             G   D   Y  LI    N     +D A+
Sbjct: 605 NKGISPDDSTYLSLIEGMGNVDTLVEDNAS 634



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 69/159 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  ++    + S YN +V +L  + R     D+  +M   G+ P    ++ LI G  + 
Sbjct: 356 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 415

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +  F   ++M + G  P    Y  LI V  +     +A  +FE++    V P+   +
Sbjct: 416 GNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 475

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +++   A G ++  + ++++M       D+  +  L+
Sbjct: 476 NAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 514



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 57/132 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M    +  T   F+ ++    K  +L+    F   M+  GF P+V  YN +I    
Sbjct: 214 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 273

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
              N + A RI + M+   ++P+  TY  L++     G+L+    +   M   G   +  
Sbjct: 274 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 333

Query: 183 CYAGLITAHTNK 194
            Y  LI  + NK
Sbjct: 334 TYNTLIDGYCNK 345



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R   ++    +N +V  L  + +    R+    M   G +P    ++++I G     
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 276

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
            ++      D M+  G  PD   Y  LIS  G CK    ++A  +F++M +  + PN  T
Sbjct: 277 NIEGARRILDAMRVKGIEPDSYTYGSLIS--GMCKEGRLEEASGLFDKMVEIGLVPNAVT 334

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           Y  L++     G L+  ++   +M   G
Sbjct: 335 YNTLIDGYCNKGDLERAFSYRDEMVKKG 362


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           +G +K      + +  D M+ANG +PDV  YN +IS  G+    D+A  +FEEM+    K
Sbjct: 435 LGKLKQVSFMSSLY--DTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCK 492

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           P+  TY  ++N     G LD  + + +DM   G   D F Y+ LI     K  + D   +
Sbjct: 493 PDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECF-GKSNKVDMACS 551

Query: 204 KIIELVEQ 211
              E+V Q
Sbjct: 552 LFDEMVAQ 559



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 165/413 (39%), Gaps = 63/413 (15%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  R+ Y  +   YN ++ +L           V++DM  +   P    +  LI  + K 
Sbjct: 207 EKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKA 266

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +        ++M + G + ++  YN +I   GK K  D+AI +  +M + + +PN  TY
Sbjct: 267 GKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTY 326

Query: 150 VCLLNACAAAGQLD---------------PVYA-IVRDMTAAGAGL-------------- 179
             +L+  +  GQL                PVY+ +++ +  +G                 
Sbjct: 327 SIMLDVLSTGGQLHRLNEILDICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHE 386

Query: 180 --DKFCYAGLITAHTNKIPRADDTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSKE 235
             D++ +  ++ A  N      +  T+ I+L+     KG ++ +    N     +G  K+
Sbjct: 387 KGDRYAFVSMLEALCNA-----EKTTEAIDLLHMMPEKGITT-DVGMYNMIFSALGKLKQ 440

Query: 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIV 295
             + + +     R  G +  + T Y++   +   +  V     L E ++     PDV   
Sbjct: 441 VSF-MSSLYDTMRANGVVPDVFT-YNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTY 498

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK--------GMQ 347
              I C   +GD+D  H +F+D       P    Y+ L+E   FG + K           
Sbjct: 499 NSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIE--CFGKSNKVDMACSLFDEM 556

Query: 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
           +AQ  + N+ + NI L      D L     E+ G  T A+  ++ ++ + +TP
Sbjct: 557 VAQGCIPNIVTYNILL------DCL-----ERRGKTTEAHKFYETLKQQGLTP 598



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +  L+   ++   +   F   ++M+  G+  D+  YN L++   K    DQA ++FE+MK
Sbjct: 186 YKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMK 245

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +    P+  TY  L+     AG+     +++ +M + G  L+   Y  +I A
Sbjct: 246 QNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEA 297



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 58/144 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S           +++++M     +P    ++S+I    K   L +       M+
Sbjct: 463 YNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQ 522

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G+ PDV  Y+ LI   GK    D A  +F+EM      PN  TY  LL+     G+  
Sbjct: 523 EKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTT 582

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
             +     +   G   D   Y+ L
Sbjct: 583 EAHKFYETLKQQGLTPDSITYSIL 606


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R  + +   Y  V+  L    R      ++ +M+   ++P    + +LI G  K 
Sbjct: 382 DEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKE 441

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++++ F   +QM   G  P++  Y  L     KC   D A  +  EM +  ++ N  TY
Sbjct: 442 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTY 501

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIE 207
             L+N    AG +D    +++DM  AG   D   Y  L+ A+  + ++ RA +   ++++
Sbjct: 502 NSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 561



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 142/374 (37%), Gaps = 17/374 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E+       N + YN +  SL    R      +   M L G  P    + ++I G  +  
Sbjct: 243 EFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVG 302

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            LQ      ++M+  G  P+   YN +I +  K     +A R+  EM    + P+G  Y 
Sbjct: 303 ELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYT 362

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKII-E 207
            L++     G +   Y +  +M       D   Y  +I     T ++  AD    +++ +
Sbjct: 363 TLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCK 422

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            +E  +   +    G   E +M     +E ++L        + G    ++T   +A   C
Sbjct: 423 RLEPDEVTYTALIDGYCKEGKM-----KEAFSLHNQML---QMGLTPNIVTYTALADGLC 474

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              +   A E L EM +K  +  ++Y     +     +G+ID   K+ +D   +   P A
Sbjct: 475 KCGEVDTANELLHEMCRKGLEL-NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDA 533

Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
             Y TL++        + M  A + L  M  R   L P + +  +L+     SG      
Sbjct: 534 VTYTTLMDAYC---KSREMVRAHELLRQMLDRE--LQPTVVTFNVLMNGFCMSGMLEDGE 588

Query: 388 YIWDLMQARKITPS 401
            +   M  + I P+
Sbjct: 589 KLLKWMLEKGIMPN 602



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 134/314 (42%), Gaps = 22/314 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    N   YN V+  L    +      V  +M+ +G+ P   ++ +LI G  K 
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL 371

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +   +   D+M+     PD   Y  +I  CG C+     +A ++F EM    ++P+  
Sbjct: 372 GNVSSAYRLFDEMQKRKISPDFITYTAVI--CGLCQTGRVMEADKLFHEMVCKRLEPDEV 429

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKI 205
           TY  L++     G++   +++   M   G   +   Y    TA  + + +    DTA ++
Sbjct: 430 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTY----TALADGLCKCGEVDTANEL 485

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR---GGFLSRLLTVYHV 262
           +  + + KG      + N+  N   G+ K    N+  A  + +     GF    +T   +
Sbjct: 486 LHEMCR-KGLELNIYTYNSLVN---GLCKAG--NIDQAVKLMKDMEVAGFHPDAVTYTTL 539

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
               C   + V+A E L +ML ++ +   V + V+ N  C   SG +++G K+ +  +  
Sbjct: 540 MDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCM--SGMLEDGEKLLKWMLEK 597

Query: 322 EKFPPAELYATLVE 335
              P A  Y +L++
Sbjct: 598 GIMPNATTYNSLIK 611



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 57/149 (38%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y T++ +    R      ++   M+   +QPT   F+ L+ G      L+D     
Sbjct: 532 DAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLL 591

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M   G +P+   YN LI       N      I+  M    V P+G TY  L+     A
Sbjct: 592 KWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKA 651

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +   + + RDM   G  L    Y  LI
Sbjct: 652 RNMKEAWFLHRDMVGKGFNLTVSSYNALI 680



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ YN+++     +       ++Y  M   GV P  + ++ LI G  K   +++ +F  
Sbjct: 602 NATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLH 661

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             M   GF   V+ YN LI    K K   +A  +FE+M++  +  + + Y
Sbjct: 662 RDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIY 711


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P+  ++++ I G MKG   Q      ++MK +   P  A Y  LI++ G
Sbjct: 263 VFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYG 322

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K   S  A+++F EM+  + KPN  T+  L+NA A  G  +    I   +  AG   D +
Sbjct: 323 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVY 382

Query: 183 CYAGLITAHT 192
            Y  L+ A++
Sbjct: 383 AYNALMEAYS 392



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 64/157 (40%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R ++  +   YN ++ +   +  +      Y +++     PT D +  L+        L+
Sbjct: 199 RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLE 258

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +M+  GF P   VYN  I    K  ++ +A+ IFE MK+   +P+  TY  L+
Sbjct: 259 KAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLI 318

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           N    A +      +  +M +     +   +  L+ A
Sbjct: 319 NLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNA 355



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M+  G  PD A YN ++   G+    + A  +FE MK+  + P  ++++ LL+A + AG+
Sbjct: 407 MQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGK 466

Query: 162 LDPVYAIVRDMTAAGAGLDKF 182
           +     IV  M  +G   D F
Sbjct: 467 VAKCEEIVNQMHKSGIKPDTF 487



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +R+++ F     + A   +PDV  +   I    + K  ++ + +FEEM      P+G T 
Sbjct: 538 ARMEELF---RSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTA 594

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
             LL+AC+   Q+  V  ++R M
Sbjct: 595 KVLLSACSNGDQIQEVTTVIRTM 617



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 112/298 (37%), Gaps = 15/298 (5%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           + F PDV  YN LI   G+     +A   + E+ +    P   TY  LL A   +G L+ 
Sbjct: 200 SSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEK 259

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVEQSKGWSSVETSG 222
             A+  +M   G       Y     A+ + + +  DT  A +I E +++ +   S  T+ 
Sbjct: 260 AEAVFAEMRKYGFPPSAVVY----NAYIDGLMKGGDTQKAVEIFERMKRDRCQPS--TAT 313

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
                 + G + +    L    +   R       +  +    +A A     +  E + E 
Sbjct: 314 YTMLINLYGKASKSYMALKV--FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQ 371

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYT 342
           L++    PDVY     +  Y  +G      ++F         P    Y  +V+     Y 
Sbjct: 372 LQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD----AYG 427

Query: 343 PKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
             G+      +  +  R + ++P M S +LL++A  ++G       I + M    I P
Sbjct: 428 RAGLHEDAQAVFEVMKR-LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 484


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A+   A +   Y   +  L    R     +++++M   G+ P   +  +LI    K   +
Sbjct: 304 AKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDV 363

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                 R +M   G   D+  YN L++   + ++   A  I EEM+K  +KP+  TY  L
Sbjct: 364 TAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 423

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           ++ C   G+LD    + ++M+  G  LD   Y  LI+   +K  R+ D    + E++E
Sbjct: 424 IDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISG-LSKAGRSVDAERILCEMME 480



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 65/148 (43%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A ++N ++  +    +    R+V+D+M+  GVQPT   F++L+ G  K S L +    R 
Sbjct: 242 ARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRG 301

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            M   G  PDV  Y   I    K      A+ +FEEM +  + PN      L++A    G
Sbjct: 302 LMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEG 361

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            +     +  +M   G   D   Y  L+
Sbjct: 362 DVTAGLELRWEMATRGVKADLVAYNALV 389



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 26  SAGAE---EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL 82
           +AG E   E A R    +   YN +V      R      D+ ++M  DG++P +  + +L
Sbjct: 364 TAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 423

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           I G  K   L      + +M   G   D   Y  LIS   K   S  A RI  EM +  +
Sbjct: 424 IDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGL 483

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +P+  TY  +++A    G +   +  +++M   G
Sbjct: 484 QPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 517



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    N     T++ +   +       ++  +M   GV+     +++L+ G  + 
Sbjct: 336 EEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRV 395

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      ++M+ +G  PD   Y  LI  C K    D A+ + +EM    V  +  TY
Sbjct: 396 RDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTY 455

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++  + AG+      I+ +M  AG   D   Y  +I A      +  D  T    L 
Sbjct: 456 TALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFC----KNGDVKTGFKHLK 511

Query: 210 E-QSKG 214
           E Q+KG
Sbjct: 512 EMQNKG 517



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 4/164 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   Y T++     +       ++  +M  +GV      + +LI G  K 
Sbjct: 406 EEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKA 465

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            R  D      +M   G  PD   Y  +I     CKN D     +  +EM+     P   
Sbjct: 466 GRSVDAERILCEMMEAGLQPDNTTYTMVIDAF--CKNGDVKTGFKHLKEMQNKGKNPGIV 523

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           TY  ++N   + GQ+     ++  M   G   +   Y  L+  H
Sbjct: 524 TYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGH 567



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 17/172 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +    A +   Y  +++ L+   R      +  +MM  G+QP    +  +I    K 
Sbjct: 441 QEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKN 500

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC--GKCKNSDQAIRIFEEMKKYEVKPNG 146
             ++  F    +M+  G  P +  YN +++  C  G+ KN+D    +   M    V PN 
Sbjct: 501 GDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADM---LLNAMLNIGVCPND 557

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDM----TAAGAGLDKFCYAGLITAHTNK 194
            TY  LL+     G+       VRD     +A G   D   Y  LI     K
Sbjct: 558 ITYNILLDGHCKHGK-------VRDTEELKSAKGMVSDFGVYTSLINEFVKK 602


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        +M 
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFEHRKRMIQENIRLDDVAYTALISG 361



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PD   Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDXYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A+D   ++
Sbjct: 249 TFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           +      KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 309 V-----MKGLKPDKITYTTLID---GCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYT 356

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       I  +   GD+  G ++ ++   
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLK-PDTGTYTMIINEFCKKGDVWKGSRLLKEMQR 415

Query: 321 SEKFPPAELYATLVEG 336
           +   P    Y  L+ G
Sbjct: 416 NGHVPSVVTYNVLMNG 431



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 60/148 (40%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V+  L   + F L+   Y++++  G   +   F+ L+    K   ++      D +   G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 172

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             P V  YN L++   +  + D+  R+   M    V+P+  TY  L+N      ++D   
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDAN 232

Query: 167 AIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +  +M   G   +   +  LI  H  K
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKK 260


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A+   A +   Y   +  L    R     +++++M   G+ P   +  +LI    K   +
Sbjct: 176 AKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDV 235

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                 R +M   G   D+  YN L++   + ++   A  I EEM+K  +KP+  TY  L
Sbjct: 236 TAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 295

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           ++ C   G+LD    + ++M+  G  LD   Y  LI+   +K  R+ D    + E++E
Sbjct: 296 IDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISG-LSKAGRSVDAERILCEMME 352



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A ++N ++  +    +    R+V+D+M+  GVQPT   F++L+ G  K S L +    R 
Sbjct: 114 ARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRG 173

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            M   G  PDV  Y   I    K      A+ +FEEM +  + PN      L++A    G
Sbjct: 174 LMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEG 233

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +     +  +M   G   D   Y  L+  
Sbjct: 234 DVTAGLELRWEMATRGVKADLVAYNALVNG 263



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 3/155 (1%)

Query: 25  TSAGAE---EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
            +AG E   E A R    +   YN +V      R      D+ ++M  DG++P +  + +
Sbjct: 235 VTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 294

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           LI G  K   L      + +M   G   D   Y  LIS   K   S  A RI  EM +  
Sbjct: 295 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 354

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           ++P+  TY  +++A    G +   +  +++M   G
Sbjct: 355 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 389



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 67/161 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    N     T++ +   +       ++  +M   GV+     +++L+ G  + 
Sbjct: 208 EEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRV 267

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      ++M+ +G  PD   Y  LI  C K    D A+ + +EM    V  +  TY
Sbjct: 268 RDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTY 327

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L++  + AG+      I+ +M  AG   D   Y  +I A
Sbjct: 328 TALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDA 368



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 4/164 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   Y T++     +       ++  +M  +GV      + +LI G  K 
Sbjct: 278 EEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKA 337

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            R  D      +M   G  PD   Y  +I     CKN D     +  +EM+     P   
Sbjct: 338 GRSVDAERILCEMMEAGLQPDNTTYTMVIDAF--CKNGDVKTGFKHLKEMQNKGKNPGIV 395

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           TY  ++N   + GQ+     ++  M   G   +   Y  L+  H
Sbjct: 396 TYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGH 439



 Score = 38.5 bits (88), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +    A +   Y  +++ L+   R      +  +MM  G+QP    +  +I    K 
Sbjct: 313 QEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKN 372

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC--GKCKNSDQAIRIFEEMKKYEVKPNG 146
             ++  F    +M+  G  P +  YN +++  C  G+ KN+D    +   M    V PN 
Sbjct: 373 GDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADM---LLNAMLNIGVCPND 429

Query: 147 QTYVCLLNACAAAGQL 162
            TY  LL+     G++
Sbjct: 430 ITYNILLDGHCKHGKV 445


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 28/303 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y ++++ +  + R      ++D M+  G+ P    +++LI G      L+  F +RD+M 
Sbjct: 322 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 381

Query: 104 ANGFLPDVAVYNYLISVC---GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G +P V+ YN L+      G+   +D  I+   EM+K  + P+  TY  L+N  +  G
Sbjct: 382 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIK---EMRKKGIIPDAITYNILINGYSRCG 438

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIEL-----VEQSK 213
                + +  +M + G       Y  LI   +  N++  ADD   KI++      V    
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 498

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
                  +  N E   M + + +  ++P  E            +T   +    C E K V
Sbjct: 499 AMVDGHCANGNVERAFMLLKEMDRKSVPPDE------------VTFNTLMQGRCREGK-V 545

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL-YAT 332
           +    LL+ +K+    PD       I  Y   GDI +  +V  D + S  F P  L Y  
Sbjct: 546 EEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV-RDEMLSIGFNPTLLTYNA 604

Query: 333 LVE 335
           L++
Sbjct: 605 LIK 607



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   YNT++   +S+      R + D M + G++P    + SLI G  K  RL++  
Sbjct: 280 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEAS 339

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLN 154
              D+M   G +P+   YN LI   G C   D  +A    +EM K  + P+  TY  L++
Sbjct: 340 GLFDKMVEIGLVPNAVTYNTLID--GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 397

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           A    G++     ++++M   G   D   Y  LI  ++
Sbjct: 398 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 435



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R++   +   +NT++     + +    R + D+M   G++P    +++LI G  + 
Sbjct: 518 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRR 577

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++D F  RD+M + GF P +  YN LI    K +  D A  + +EM    + P+  TY
Sbjct: 578 GDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 637

Query: 150 VCLL 153
           + L+
Sbjct: 638 LSLI 641



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 4/150 (2%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           +R F LL++    M    V P    F++L+ G  +  ++++     D+MK  G  PD   
Sbjct: 511 ERAFMLLKE----MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHIS 566

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           YN LIS  G+  +   A R+ +EM      P   TY  L+       + D    ++++M 
Sbjct: 567 YNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMV 626

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
             G   D   Y  LI    N     +D A+
Sbjct: 627 NKGISPDDSTYLSLIEGMGNVDTLVEDNAS 656



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 69/159 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  ++    + S YN +V +L  + R     D+  +M   G+ P    ++ LI G  + 
Sbjct: 378 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 437

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +  F   ++M + G  P    Y  LI V  +     +A  +FE++    V P+   +
Sbjct: 438 GNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 497

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +++   A G ++  + ++++M       D+  +  L+
Sbjct: 498 NAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM 536



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 57/132 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M    +  T   F+ ++    K  +L+    F   M+  GF P+V  YN +I    
Sbjct: 236 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 295

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
              N + A RI + M+   ++P+  TY  L++     G+L+    +   M   G   +  
Sbjct: 296 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 355

Query: 183 CYAGLITAHTNK 194
            Y  LI  + NK
Sbjct: 356 TYNTLIDGYCNK 367



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R   ++    +N +V  L  + +    R+    M   G +P    ++++I G     
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 298

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
            ++      D M+  G  PD   Y  LIS  G CK    ++A  +F++M +  + PN  T
Sbjct: 299 NIEGARRILDAMRVKGIEPDSYTYGSLIS--GMCKEGRLEEASGLFDKMVEIGLVPNAVT 356

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           Y  L++     G L+  ++   +M   G
Sbjct: 357 YNTLIDGYCNKGDLERAFSYRDEMVKKG 384


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L+   R     +++ DM   G+      ++ LI G  +  +L        +M+ 
Sbjct: 311 NNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEE 370

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           NG  P++  YN LIS  GK  N   A R+F EMK+  V PN  +Y  L+     AG+ D 
Sbjct: 371 NGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDA 430

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
             ++ R+M A G   +   Y  LI
Sbjct: 431 AISLFREMKAEGCPPNHVTYNLLI 454



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G +PT   + S+I   MKG  +Q+      QM    F+PD   +N LI    K    ++
Sbjct: 59  EGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEE 118

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A  +F +M K  V P+  TY  L+ +    G++D V  +   MTA G   + F Y  ++ 
Sbjct: 119 ACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMH 178

Query: 190 AHTNKIPRADDTATKIIELVEQ 211
           A  +   R D+      ++V++
Sbjct: 179 AFGSA-GRVDEACDIFQQMVQK 199



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 157/405 (38%), Gaps = 46/405 (11%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVC 121
           +Y  M+     P    F+ LI    K  ++++    F D  K N   PDV  Y  LI   
Sbjct: 87  MYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLN-VSPDVYTYTILIRSL 145

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G     D  +++FE M     +PN  TY  +++A  +AG++D    I + M   G   D 
Sbjct: 146 GTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDA 205

Query: 182 FCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGVSKE 235
             Y  LI A   T ++ RA D   K      +    S + + G   +     E+ G  K 
Sbjct: 206 VTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKA 265

Query: 236 E--LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
           +  + N  T   +  R G+  R+  V+ +                 LEM+  D K  D+ 
Sbjct: 266 KGLVSNELTYAILIERLGWAGRVEDVWQL----------------YLEMVDNDIKY-DIV 308

Query: 294 IVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTL 353
            +   + C   +G ++   ++F+D            Y  L+ G   G   K +  A   L
Sbjct: 309 TINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILING--LGRAGK-LDAAGALL 365

Query: 354 VNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLK 413
           + M       +P + +   L+++  K    + A  ++  M+ R + P++ +  +   G  
Sbjct: 366 LEMEENGC--APNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFG 423

Query: 414 D-----------REVPADD--PRLVVVSRAYDNLLR-GRPGAVRQ 444
                       RE+ A+   P  V  +   D L+R GR GA  +
Sbjct: 424 KAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAME 468



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    +      +  +M  +G  P    +++LI    K S L        +MK
Sbjct: 345 YNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMK 404

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  Y+ LI   GK   +D AI +F EMK     PN  TY  L++    AG+  
Sbjct: 405 ERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFG 464

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
                +R+M  AG  + K   + L+
Sbjct: 465 AAMEYLREMRDAGCQMGKVTKSLLV 489



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 1/157 (0%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R++ N  + YN++++SL  +     L +++  M   G+      +  LI       R++D
Sbjct: 232 RSFTNEVT-YNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVED 290

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +    +M  N    D+   N ++    K    + A  +F++MK   +  +  TY  L+N
Sbjct: 291 VWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILIN 350

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
               AG+LD   A++ +M   G   +   Y  LI+++
Sbjct: 351 GLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSY 387



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 62/140 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  +  +  + + +N ++ SL    +     +V+ DM    V P    +  LI      
Sbjct: 89  KQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTI 148

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+       + M A G  P++  Y+ ++   G     D+A  IF++M +  ++P+  TY
Sbjct: 149 GRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTY 208

Query: 150 VCLLNACAAAGQLDPVYAIV 169
             L++A    GQL+  +  V
Sbjct: 209 NILIDAFGKTGQLERAFDFV 228



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 17  ALGRRFFVTSAGAE--EYARRNYANNASEYNTVVTS------LTSQRRFFLLRDVYDDMM 68
            LGR   + +AGA   E      A N   YNT+++S      L++  R FL      +M 
Sbjct: 351 GLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFL------EMK 404

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
             GV P    + SLI G  K  R         +MKA G  P+   YN LI    +     
Sbjct: 405 ERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFG 464

Query: 129 QAIRIFEEMK 138
            A+    EM+
Sbjct: 465 AAMEYLREMR 474


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 70/149 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA    TVV +L  +       DV D M   GV+P    + +LI G    S + +     
Sbjct: 283 NAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVF 342

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M   G  P+V  YN LI+   K +  D+A+ +FEEM + ++ PN  TY  L++     
Sbjct: 343 DMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHV 402

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L    A+ R+M A G   D   Y  L+
Sbjct: 403 GRLQDAIALFREMVACGQIPDLVTYRILL 431



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
             +  A N   YNT++       R      ++++M    + P    +++LI G     RL
Sbjct: 346 VHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRL 405

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           QD      +M A G +PD+  Y  L+  +C  C + D+A+ + + ++   + P+ Q Y  
Sbjct: 406 QDAIALFREMVACGQIPDLVTYRILLDYLCKNC-HLDKAMALLKAIEGSNLDPDIQIYTI 464

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAG 176
           +++    AG+L+    +  ++++ G
Sbjct: 465 VIDGMCRAGELEDARDLFSNLSSKG 489



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 63/155 (40%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +N    N ++ S     R      V   ++  G QP    F +LI G     ++ +    
Sbjct: 107 HNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHL 166

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D+M   GF PDV +Y  LI+   K  ++  AIR+   M+K   +P+   Y  L+++   
Sbjct: 167 FDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCK 226

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             Q    + +  +M   G   +      L+ A  N
Sbjct: 227 DRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCN 261



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 9/158 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + + + T++  L  + +      ++D M+ +G QP   ++ +LI G  K           
Sbjct: 143 DTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLL 202

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+     PDV VY  LI    K +   QA  +F EM    + PN  T   L+ A    
Sbjct: 203 RSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNL 262

Query: 160 GQLDPVYAIVRDMT---------AAGAGLDKFCYAGLI 188
           G+   V  ++ +M          +    +D  C  G++
Sbjct: 263 GEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMV 300



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D M+  G  P    +++LI G  K  R+    +  ++M     +P+   YN LI    
Sbjct: 341 VFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLC 400

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  AI +F EM      P+  TY  LL+       LD   A+++ +   G+ LD
Sbjct: 401 HVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAI--EGSNLD 456



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 7/189 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    N   YNT++  L    R      ++ +M+  G  P    +  L+    K 
Sbjct: 378 EEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKN 437

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L         ++ +   PD+ +Y  +I    +    + A  +F  +    +KPN  TY
Sbjct: 438 CHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTY 497

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             + +     G LD    +  +M       D   Y  +    T    R ++T+ + I+L+
Sbjct: 498 NIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTI----TQGFLRNNETS-RAIQLL 552

Query: 210 EQ--SKGWS 216
           E+  ++G+S
Sbjct: 553 EEMLARGFS 561



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ SL   R+     +++ +M+  G+ P     +SL+         +      ++M 
Sbjct: 217 YGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMV 276

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +  +P+      ++    K     QA  + + M +  V+P+  TY  L++      ++D
Sbjct: 277 DSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMD 336

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
               +   M   G   + F Y  LI  +  KI R D       E+  Q
Sbjct: 337 EAVKVFDMMVHKGCAPNVFSYNTLINGYC-KIERMDKAMYLFEEMCRQ 383


>gi|222612526|gb|EEE50658.1| hypothetical protein OsJ_30888 [Oryza sativa Japonica Group]
          Length = 869

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 267 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKG
Sbjct: 327 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKG 381



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P ++ +N L+SVC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +
Sbjct: 239 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 298

Query: 169 VRDMTAAGAGLDKFCYAGLI 188
             +M +AG   +   Y+ LI
Sbjct: 299 FHEMVSAGIEPNVNTYSALI 318



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  + +   GAL     +  AG +         +   Y T++++     +   + +
Sbjct: 246 MLLSVCANSQDFDGALQVMVLLKEAGLKP--------DCKLYTTLISTCAKCGKVDAMFE 297

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 298 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 357

Query: 123 KCKNSDQAIRIFEEMK--------KYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM            + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 358 ESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 417

Query: 172 MTAAG 176
               G
Sbjct: 418 YNIKG 422



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 19/198 (9%)

Query: 5   QSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVT-----------SLTS 53
           + I   H +VG  +        AG  + AR  Y     EYN   T           SLT 
Sbjct: 383 KPILPDHVTVGALMKT---CIQAGQADRAREVY-KMLQEYNIKGTPEVYTIALRSCSLTG 438

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFLPDVA 112
              F L   +Y+DM   GVQP  ++F S +V     +R  D  F      +A G+     
Sbjct: 439 DLGFAL--KIYEDMNKIGVQPD-EMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTI 495

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+ L+  C   K+  +A+++FEE+K  ++ P       L+ A     Q+   + ++ +M
Sbjct: 496 AYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEM 555

Query: 173 TAAGAGLDKFCYAGLITA 190
              G   +   Y+ L  A
Sbjct: 556 KRLGVCPNMITYSVLFVA 573



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/122 (18%), Positives = 54/122 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + Y      Y++++ +  + + +     +++++    + PT  + ++LI     G ++  
Sbjct: 488 KGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLK 547

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           +F    +MK  G  P++  Y+ L   C +   +   + +FE++K   +  N     CL  
Sbjct: 548 SFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTG 607

Query: 155 AC 156
            C
Sbjct: 608 LC 609



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   +  C    +   A++I+E+M K  V+P+      L++    A + D  + I++D 
Sbjct: 426 VYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDA 485

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMG 231
            A G  +    Y+ L+ A  N    A D   K ++L E+ K    + T S  NA    + 
Sbjct: 486 RAKGYQVGTIAYSSLMGACCN----AKDW-KKALQLFEEIKSIKLMPTVSMMNALITALC 540

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
              + L +      + +R G    ++T Y V F AC    + Q    L E LK D
Sbjct: 541 DGDQVLKSFEVLSEM-KRLGVCPNMIT-YSVLFVACERNAEAQLGLDLFEQLKID 593


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 155/381 (40%), Gaps = 36/381 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L    R     +++  M  +   P    ++++I+G     R +D +   ++++
Sbjct: 21  YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 80

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P V  +N +++  GK +  D+A+ +FE MKK + +PN  TY  +++     G+++
Sbjct: 81  ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVE 139

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y I+ +M  A        +  L+T +        D   K  +L E  K + S    G 
Sbjct: 140 EAYRILDEMEHASL------FPNLLTVNI-----MVDRLCKARKLEEAYKIFESASQRGC 188

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA-----------FHACAELKD 272
           N +        + L      +  +R      ++L   H A           F      +D
Sbjct: 189 NPDCVTYCSLIDGLGKKGQVDEAYR---LFEKMLDAGHNANPVVYTSLIRNFFIHGRKED 245

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
               +   E++++  K PD+ ++   + C   +G+++ G  +FED       P    Y+ 
Sbjct: 246 --GHKIFKELIRRGCK-PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSI 302

Query: 333 LVEGAMFGYTPKGMQLAQDTLVN-MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD 391
           L+     G T  G       + + M  +   L  R  +   +V    KSG    A  I +
Sbjct: 303 LIH----GLTKAGQARETSNIFHAMKQQGFALDARAYN--AVVDGFCKSGKVHKAYEILE 356

Query: 392 LMQARKITPSLPAVEAYYNGL 412
            M+ + + P++    A  +GL
Sbjct: 357 EMKEKCVQPTVATYGAIVDGL 377



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ +A +A  YN VV       +     ++ ++M    VQPT   + +++ G  K  RL 
Sbjct: 325 QQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD 384

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           + +   ++ K+ G   +V +Y+ LI   GK    D+A  I EEM K  + PN  T+  LL
Sbjct: 385 EAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL 444

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +A   A +++      + M       + + Y+ LI  
Sbjct: 445 DALVKAEEINEALVCFQSMKEMKCPPNTYTYSILING 481



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 141/352 (40%), Gaps = 34/352 (9%)

Query: 2   RLLQSIYRHHKSVGGALGRRFFVTSAGAE------EYARRNYANNASEYNTVVTSLTSQR 55
           ++L + +  +  V  +L R FF+     +      E  RR    + +  NT +  +    
Sbjct: 217 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAG 276

Query: 56  RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115
                R +++D+   G  P    +  LI G  K  + ++T      MK  GF  D   YN
Sbjct: 277 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 336

Query: 116 YLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            ++   G CK+    +A  I EEMK+  V+P   TY  +++  A   +LD  Y +  +  
Sbjct: 337 AVVD--GFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK 394

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-----KGWSSVETSGNNAE-- 226
           + G  L+   Y+ LI     K+ R D+    + E++++        W+S+  +   AE  
Sbjct: 395 SKGIELNVVLYSSLIDGF-GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 453

Query: 227 NEMMGV--SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
           NE +    S +E+   P   Y              Y +  +    ++         + ++
Sbjct: 454 NEALVCFQSMKEM-KCPPNTY-------------TYSILINGLCRVQKYNKAFVFWQDMQ 499

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           K    P+V      I      G+I + + +FE +  +   P A  +  L+EG
Sbjct: 500 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEG 551



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 69/164 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    N   Y++++       R      + ++MM  G+ P    ++SL+   +K 
Sbjct: 391 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKA 450

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + +       MK     P+   Y+ LI+   + +  ++A   +++M+K  + PN  TY
Sbjct: 451 EEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTY 510

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +++  A  G +   Y++     A G   D   +  LI   +N
Sbjct: 511 TTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSN 554



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 51/137 (37%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    N   +N+++ +L            +  M      P    +  LI G  + 
Sbjct: 426 EEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRV 485

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +    F F   M+  G +P+V  Y  +IS   K  N   A  +FE  K     P+  ++
Sbjct: 486 QKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASF 545

Query: 150 VCLLNACAAAGQLDPVY 166
             L+   + A +    Y
Sbjct: 546 NALIEGMSNANRAMEAY 562



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 1/169 (0%)

Query: 13  SVGGALGRRFFVTSA-GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG 71
           S+   LG++  V  A    E  +++   N+S YN ++  L    R      + D+M    
Sbjct: 93  SILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHAS 152

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           + P     + ++    K  +L++ +   +     G  PD   Y  LI   GK    D+A 
Sbjct: 153 LFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAY 212

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           R+FE+M       N   Y  L+      G+ +  + I +++   G   D
Sbjct: 213 RLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 261



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 68/388 (17%), Positives = 148/388 (38%), Gaps = 17/388 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  ++R    +   Y +++  L  + +      +++ M+  G      ++ SLI      
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +D      ++   G  PD+ + N  +    K    ++   IFE+++ Y   P+ ++Y
Sbjct: 241 GRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY 300

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
             L++    AGQ      I   M   G  LD   Y  ++     + K+ +    A +I+E
Sbjct: 301 SILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHK----AYEILE 356

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            +++     +V T G   +    G++K +  +     +   +   +   + +Y       
Sbjct: 357 EMKEKCVQPTVATYGAIVD----GLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 412

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            ++  +     +LE + K   +P+VY     +   + + +I+     F+     +  P  
Sbjct: 413 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNT 472

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
             Y+ L+ G        K     QD    M  +   L P + +   +++   K G  T A
Sbjct: 473 YTYSILINGLCRVQKYNKAFVFWQD----MQKQG--LVPNVVTYTTMISGLAKVGNITDA 526

Query: 387 NYIWDLMQARKITPSLPAVEAYYNGLKD 414
             +++  +A    P   +  A   G+ +
Sbjct: 527 YSLFERFKANGGIPDAASFNALIEGMSN 554



 Score = 38.1 bits (87), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 11/221 (4%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           F  ++KA G  PD   Y  +I V  K     +A  +F +M+     P    Y  ++    
Sbjct: 5   FFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYG 64

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
           +AG+ +  Y ++  +   G       +  ++T    K  R  D A  + E++++    + 
Sbjct: 65  SAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK--RKVDEALSLFEVMKKD---AE 119

Query: 218 VETSGNNAENEM--MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
             +S  N   +M  +G   EE Y +   E  H        LLTV  +    C   K  +A
Sbjct: 120 PNSSTYNIIIDMLCLGGRVEEAYRI-LDEMEH--ASLFPNLLTVNIMVDRLCKARKLEEA 176

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
            + + E   +   +PD       I      G +D  +++FE
Sbjct: 177 YK-IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFE 216


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 171/434 (39%), Gaps = 48/434 (11%)

Query: 13  SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           +V G +G  +   ++  E+      A +A  YNT++T             V+++M   G 
Sbjct: 251 NVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGF 310

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
              +  +++L+    K  R ++     ++M+ NGF P +  YN LIS   +    D+A+ 
Sbjct: 311 SHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +  +M +   KP+  TY  LL+    AG+++    I  +M  AG   +   +   I  + 
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYG 430

Query: 193 NKIPRADDTATKIIE------LVEQSKGWSSVET--SGNNAENEMMGVSKE--------- 235
           N+    D    KI +      L      W+++      N  ++E+ GV KE         
Sbjct: 431 NRGKFVD--MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488

Query: 236 -ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD---RKSPD 291
            E +N   + Y   R G   + +TVY     A     D+    T+L  L +     +S  
Sbjct: 489 RETFNTLISAY--SRCGSFEQAMTVYRRMLDAGVT-PDLSTYNTVLAALARGGMWEQSEK 545

Query: 292 VYIVMQNIRC-------------YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
           V   M++ RC             Y +  +I   H + E+       P A L  TLV   +
Sbjct: 546 VLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV---L 602

Query: 339 FGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI 398
                  +  A+     +  R    SP + +   +V+   +      AN + D M+ R  
Sbjct: 603 VCSKCDLLPEAERAFSELKERG--FSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGF 660

Query: 399 TPSLPAVEAYYNGL 412
           TPS+    A YN L
Sbjct: 661 TPSM----ATYNSL 670



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 2/156 (1%)

Query: 19  GRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           GRR  V  A    +    R +  + + YN+++   +    F    ++  +++  G++P  
Sbjct: 640 GRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDI 699

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++++I    + +R++D      +M+ +G +PDV  YN  I         ++AI +   
Sbjct: 700 ISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRY 759

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           M K+  +PN  TY  +++      + D     V D+
Sbjct: 760 MIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 42/272 (15%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V++ L  + R     ++++ +  DG       + SLI       R ++      +M+  G
Sbjct: 179 VISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEG 238

Query: 107 FLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
             P +  YN +++V GK     ++   + E+MK   + P+  TY  L+  C         
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225
             +  +M AAG   DK  Y  L+  +  K  R  + A K++  +E +    S+ T     
Sbjct: 299 AQVFEEMKAAGFSHDKVTYNALLDVY-GKSHRPKE-AMKVLNEMELNGFSPSIVT----- 351

Query: 226 ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKK 285
                       YN   + Y   R G L                    +AME   +M +K
Sbjct: 352 ------------YNSLISAYA--RDGMLD-------------------EAMELKNQMAEK 378

Query: 286 DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             K PDV+     +  +  +G +++   +FE+
Sbjct: 379 GTK-PDVFTYTTLLSGFERAGKVESAMNIFEE 409



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 1/170 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R ++ + +  N++V+    ++      +V D M   G  P+   ++SL+    + +
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSA 678

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
               +     ++ A G  PD+  YN +I    +      A RIF EM+   + P+  TY 
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYN 738

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             + + AA    +    +VR M   G   ++  Y  ++  +  K+ R D+
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYC-KLNRKDE 787



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 69/152 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y +++ +  + +   L+  + +++    ++P   L  +L++   K   L +     
Sbjct: 558 NELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAF 617

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            ++K  GF PD+   N ++S+ G+ +   +A  + + MK+    P+  TY  L+   + +
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRS 677

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                   I+R++ A G   D   Y  +I A+
Sbjct: 678 ADFGKSEEILREILAKGIKPDIISYNTVIYAY 709


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 123/311 (39%), Gaps = 14/311 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R +   +    + ++ SL    +    RDV+D M + G  P    ++ ++ G    
Sbjct: 326 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 385

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  PD   +N LI     C   D+A+ IF EM+ + VKP+  TY
Sbjct: 386 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 445

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++ A    G++D        M   G   DK+ Y  LI        + +A +    I E
Sbjct: 446 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL---ISE 502

Query: 208 LVEQSKGWSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           ++        V  S   NN       +  + +++L     +H      S L+  Y     
Sbjct: 503 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGY----- 557

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C   K  +A+     M+    + P+V +    +  Y   G ID G  +F + +     P
Sbjct: 558 -CLVGKMEKALRVFDAMVSAGIE-PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 615

Query: 326 PAELYATLVEG 336
              LY+ +++G
Sbjct: 616 STILYSIIIDG 626



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 65/155 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNTV+     +       D++ +M+  G+ P    ++S++    K   +     F 
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 290

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM     LP+   YN LI          +A+R+F+EM+++ + P+  T   L+ +    
Sbjct: 291 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 350

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G++     +   M   G   D F Y  ++  +  K
Sbjct: 351 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 385



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +++++ +L    R    ++++D  +  G+ P   ++  L+ G     +++      D M 
Sbjct: 515 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 574

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+V VY  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 575 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 634

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
           P      +MT +G  +D   Y
Sbjct: 635 PAKMKFHEMTESGIAMDICTY 655



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 133/364 (36%), Gaps = 50/364 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   YN+VV +L   R           M+   V P    +++LI G    
Sbjct: 256 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 315

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVC--GKCKNSDQAI--------------- 131
            + ++      +M+ +  LPDV   + L+ S+C  GK K +                   
Sbjct: 316 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 375

Query: 132 -----------------RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
                             +F+ M    + P+  T+  L+ A A  G LD    I  +M  
Sbjct: 376 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD 435

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS----KGWSSVETSGNNAENEMM 230
            G   D   Y  +I A   +I + DD   K  ++++Q     K   +    G      ++
Sbjct: 436 HGVKPDVVTYRTVIAALC-RIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 494

Query: 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP 290
               +EL +      +H    F S ++       + C +L  V   + + ++       P
Sbjct: 495 --KAKELISEIMNNGMHLDIVFFSSIIN------NLC-KLGRVMDAQNIFDLTVNVGLHP 545

Query: 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLA 349
           D  +    +  Y   G ++   +VF+  + +   P   +Y TLV G    G   +G+ L 
Sbjct: 546 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 605

Query: 350 QDTL 353
           ++ L
Sbjct: 606 REML 609



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 16/218 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+V       R      ++ +M+  G++P+  L+  +I G  +  R        
Sbjct: 581 NVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKF 640

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  +G   D+  YN ++    K +  D+AI +F+E++   VK N  T   +++     
Sbjct: 641 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 700

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG-WSSV 218
            +++    +   ++ +    +   Y+ +I   TN I            LVE+++  +SS+
Sbjct: 701 RRVEEAKDLFASISRSRLVPNVVTYSIMI---TNLIKEG---------LVEEAEDMFSSM 748

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
           + +G    + ++     EL  L   E V R G +LS++
Sbjct: 749 QNAGCEPNSRLLNHVVREL--LKKNEIV-RAGAYLSKI 783


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+  L+        + + + M+  G  P    F++LIV     +RL++      ++ 
Sbjct: 338 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELT 397

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  +N LI+   K  +    IR+FEEMK     P+  TY  L++   + G+L 
Sbjct: 398 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLV 457

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++++M + G       Y  +I A
Sbjct: 458 NALDLLKEMESNGCPRSTVTYNTIIDA 484



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 16/221 (7%)

Query: 1   MRLLQSIYRHHKSVG------------GALGRRFFVTSA--GAEEYARRNYANNASEYNT 46
           M+LL+S+Y      G             AL R   V +A    EE +    A + + + T
Sbjct: 176 MKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTT 235

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++     +        V   MM  G  PTR   + LI G  K  R++D   +  +  A+G
Sbjct: 236 LMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADG 295

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
           F PD   YN  +    +  +   A+++ + M +    P+  TY  ++N  +  G+LD   
Sbjct: 296 FEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAK 355

Query: 167 AIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKI 205
            IV  M   G   D   +  LI A    N++  A D A ++
Sbjct: 356 GIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLAREL 396



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 6/171 (3%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           LG R F      EE      A +   YN ++  L S  +     D+  +M  +G   +  
Sbjct: 423 LGIRLF------EEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTV 476

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            ++++I    K  R+++     DQM A+G       +N LI    K K  D A  + E+M
Sbjct: 477 TYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQM 536

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            K  ++P+  TY  +L      G L     I+  MTA G  +D   Y  LI
Sbjct: 537 VKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLI 587



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +L  Q R     +V+D M   G+  +   F++LI G  K  R+ D     +QM 
Sbjct: 478 YNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 537

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  P    YN +++    CK  D  +A  I E M     + +  TY  L+N    AG+
Sbjct: 538 KEGLQPSNITYNSILT--HYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 595

Query: 162 LDPVYAIVRDMTAAG 176
                 ++R M   G
Sbjct: 596 TQVALKLLRGMRIKG 610



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 68/147 (46%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           + +A  +NT++  L   +R     ++ + M+ +G+QP+   ++S++    K   L+    
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAAD 566

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             + M ANGF  DV  Y  LI+   K   +  A+++   M+   ++P  + Y  ++ +  
Sbjct: 567 ILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLF 626

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               L    ++ R+MT  G   D   Y
Sbjct: 627 RRNNLRDALSLFREMTEVGEPPDALTY 653



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 136/363 (37%), Gaps = 55/363 (15%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYAR-----------RNYAN------NASEYN 45
           L++ + R     G  + R F       E YAR           RN  N      + + YN
Sbjct: 111 LVREMRREGHEAGAGVVRSF------VESYARLRRFDDAVDLVRNQLNTFGVQADTAVYN 164

Query: 46  TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105
            ++  L    R  LL  VY++M   G+QP     ++LI    +  +++      ++M ++
Sbjct: 165 HLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSH 224

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
              PD   +  L+    +  + + A+R+  +M +    P   T   L+N     G+++  
Sbjct: 225 AVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDA 284

Query: 166 YAIVRDMTAAGAGLDKFCYAGLI-----TAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
              ++   A G   D+  Y   +       H +        A K+++L+ Q      V T
Sbjct: 285 LGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSH-------ALKVMDLMLQEGHDPDVFT 337

Query: 221 --------SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
                   S N   +E  G+           + V R  G L    T   +    C++ + 
Sbjct: 338 YNTVINCLSKNGELDEAKGIVN---------QMVDR--GCLPDTTTFNTLIVALCSQNRL 386

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
            +A++   E+  K   SPDVY     I      GD   G ++FE+   S   P    Y  
Sbjct: 387 EEALDLARELTVKGL-SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNI 445

Query: 333 LVE 335
           L++
Sbjct: 446 LID 448



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 112/301 (37%), Gaps = 22/301 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT V  L           V D M+ +G  P    ++++I    K   L +     +QM 
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 362

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD   +N LI         ++A+ +  E+    + P+  T+  L+NA    G  D
Sbjct: 363 DRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVG--D 420

Query: 164 PVYAI--VRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           P   I    +M ++G   D+  Y  LI       K+  A D   ++     +S G     
Sbjct: 421 PHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEM-----ESNGCPRST 475

Query: 220 TSGN---NAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
            + N   +A  + M + + EE+++   A  +       SR    ++       + K +  
Sbjct: 476 VTYNTIIDALCKQMRIEEAEEVFDQMDAHGI-------SRSAVTFNTLIDGLCKAKRIDD 528

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              L+E + K+   P        +  Y   GD+     + E    +        Y TL+ 
Sbjct: 529 ATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLIN 588

Query: 336 G 336
           G
Sbjct: 589 G 589



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 1/134 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++T    Q       D+ + M  +G +     + +LI G  K  R Q        M+
Sbjct: 548 YNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMR 607

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAAAGQL 162
             G  P    YN +I    +  N   A+ +F EM +    P+  TY +     C   G +
Sbjct: 608 IKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPI 667

Query: 163 DPVYAIVRDMTAAG 176
              +  + +M   G
Sbjct: 668 KEAFDFLVEMVNKG 681


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    +A  YNT++    ++    +     D+M+  G+ PT   ++SLI      
Sbjct: 315 EEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFME 374

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  +      +++  G  PD   YN LI+   +C N+ +A  + +EM    +KP  +TY
Sbjct: 375 QRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY 434

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             LL+  +   ++     + + +T+ G   D   +  LI  H
Sbjct: 435 TSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGH 476



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 85/170 (50%), Gaps = 10/170 (5%)

Query: 30  EEYARRNYANNASEYNTVVTS---LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E   +  + +A  YN ++       + ++ FLL   +D+M+  G++PT+  + SL+   
Sbjct: 385 KEIQEKGISPDAITYNILINGYCRCANAKKAFLL---HDEMLASGIKPTKKTYTSLLHVL 441

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKP 144
            K +R+++      ++ + G LPDV ++N LI   G C NS+   A  + ++M + +V P
Sbjct: 442 SKKNRMKEADDLFKKITSEGVLPDVIMFNALID--GHCSNSNVKGAFELLKDMDRMKVPP 499

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +  T+  ++      G+++    +  +M   G   D   +  LI+ ++ +
Sbjct: 500 DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRR 549



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++     + +    R+++D+M   G++P    F++LI G  +   ++D F  R++M 
Sbjct: 504 FNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML 563

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             GF P V  YN L+   G CKN   D A  + +EM    + P+  TY  L+   A
Sbjct: 564 DTGFNPTVLTYNALVQ--GLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 2/153 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT+V    S  R      +   M    ++P    + SLI G  K  RL++     
Sbjct: 255 NIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIF 314

Query: 100 DQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           ++M   G  P   +YN LI   C K  N D A    +EM K  + P   TY  L++A   
Sbjct: 315 EEMVQKGLRPSAVIYNTLIDGFCNK-GNLDMASAYKDEMLKKGISPTMSTYNSLIHALFM 373

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             + D    +++++   G   D   Y  LI  +
Sbjct: 374 EQRTDEAECMIKEIQEKGISPDAITYNILINGY 406



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 7/188 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R    ++   +N ++  L  + +    +D    M   GV+P    +++++ G     
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           R++        MK     PD   Y  LIS  G CK    ++A +IFEEM +  ++P+   
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLIS--GMCKQGRLEEASKIFEEMVQKGLRPSAVI 328

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G LD   A   +M   G       Y  LI A   +  R D+    I E+
Sbjct: 329 YNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFME-QRTDEAECMIKEI 387

Query: 209 VEQSKGWS 216
             Q KG S
Sbjct: 388 --QEKGIS 393



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/168 (19%), Positives = 74/168 (44%)

Query: 24  VTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
           + SA  +E  ++  +   S YN+++ +L  ++R      +  ++   G+ P    ++ LI
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
            G  + +  +  F   D+M A+G  P    Y  L+ V  K     +A  +F+++    V 
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           P+   +  L++   +   +   + +++DM       D+  +  ++  H
Sbjct: 464 PDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 111/270 (41%), Gaps = 18/270 (6%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV PT +  +SL+   +K +R +  +    +M        V  +N +I+V  K     +A
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                 M+   VKPN  TY  +++   ++G+++   AI+  M       D F Y  LI+ 
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSV------ETSGNNAENEMMGVSKEELYNLPTAE 244
              K  R ++ +    E+V++    S+V      +   N    +M    K+E+       
Sbjct: 301 MC-KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEML------ 353

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
              ++G  +S  ++ Y+   HA    +     E +++ +++   SPD       I  Y  
Sbjct: 354 ---KKG--ISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLV 334
             +      + ++ + S   P  + Y +L+
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLL 438



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M    ++ +   F+ +I    K  +L+    F   M+ +G  P++  YN ++   G
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVH--G 265

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C +   + A  I   MK+ +++P+  TY  L++     G+L+    I  +M   G    
Sbjct: 266 YCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPS 325

Query: 181 KFCYAGLITAHTNK 194
              Y  LI    NK
Sbjct: 326 AVIYNTLIDGFCNK 339



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
           F LL+D+ D M    V P    F++++ G  +  ++++     D+MK  G  PD   +N 
Sbjct: 486 FELLKDM-DRM---KVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           LIS   +  +   A R+  EM      P   TY  L+       + D    ++++M + G
Sbjct: 542 LISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKG 601

Query: 177 AGLDKFCYAGLI 188
              D   Y  LI
Sbjct: 602 MTPDDTTYFTLI 613


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M   GV P   +F +LI    K   +         M+  G +PD+  YN L++   
Sbjct: 277 MFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLC 336

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           + +N   A  I EEMK   +KP+  TY  L++ C   G+LD    I + M      LD+ 
Sbjct: 337 RARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEV 396

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQS 212
            Y  LI+   +K  R  D    + E++E +
Sbjct: 397 TYTALISG-LSKAGRPVDAERVLREMMEAA 425



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  + T++ +   +       D+Y DM + GV P    +++L+ G  +   L+      
Sbjct: 289 NAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIV 348

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  G  PD   Y  LI  C K    D A+ I ++M + EV  +  TY  L++  + A
Sbjct: 349 EEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKA 408

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G+      ++R+M  A    D   Y  +I A   K
Sbjct: 409 GRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRK 443



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 1/145 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++            R V+D+M    VQPT   F++LI G  +   L        +M 
Sbjct: 189 FNVLMRDFVRLGELVSARKVFDEMR-RSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMS 247

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y  LI    +    + A+++F EM+   V PN   +  L++A    G ++
Sbjct: 248 DVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVN 307

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               + +DM   G   D   Y  L+
Sbjct: 308 AGMDLYQDMRVRGVMPDLVAYNALV 332



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V  L   R       + ++M   G++P +  + +LI G  K  +L      + +M 
Sbjct: 328 YNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMA 387

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 D   Y  LIS   K      A R+  EM +  ++P+  TY  +++A    G + 
Sbjct: 388 EKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVK 447

Query: 164 PVYAIVRDMTAAG 176
             + ++++M   G
Sbjct: 448 TGFKLLKEMQNKG 460



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 90  SRLQDT---FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
           SRL  T   + F  Q+   G  P+  ++N L+    +      A ++F+EM++  V+P  
Sbjct: 162 SRLPSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTV 220

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            T+  L++    A  LD V  + ++M+  G   D + Y  LI
Sbjct: 221 VTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALI 262


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 117/295 (39%), Gaps = 10/295 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +   Q       ++ D M   G++P    ++++I G  K  +        D+M 
Sbjct: 135 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 194

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD A YN L+  C +  N   A RIF+EM    V P+  ++  L+   +  G LD
Sbjct: 195 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV--ETS 221
                 RDM  AG   D   Y  LI         ++    +  E++EQ      V   T 
Sbjct: 255 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR-DEMLEQGCVLDVVTYNTI 313

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N    E M    +EL+   T      RG F       +    +  ++  ++    TL E
Sbjct: 314 LNGLCKEKMLSEADELFTEMT-----ERGVFPD--FYTFTTLINGYSKDGNMNKAVTLFE 366

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           M+ +    PDV      I  +    +++  ++++ D I    +P    Y  L+ G
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 421



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 146/393 (37%), Gaps = 33/393 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     N    N ++ +L   ++    +    DM   GV P    +++LI    + 
Sbjct: 86  QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQ 145

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             L++ F   D M   G  P V  YN +I+  G CK     +A  + +EM K  + P+  
Sbjct: 146 GLLEEAFELMDSMSGKGLKPCVFTYNAIIN--GLCKTGKYLRAKGVLDEMLKIGMSPDTA 203

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  LL  C     +     I  +M + G   D   ++ LI   +       D A K   
Sbjct: 204 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN--GCLDQALKYFR 261

Query: 208 LVEQSKGWS------SVETSG---NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
            ++ + G +      ++   G   N   +E + V  E L             G +  ++T
Sbjct: 262 DMKNA-GLAPDNVIYTILIGGFCRNGVMSEALKVRDEML-----------EQGCVLDVVT 309

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
              +    C E    +A E   EM ++    PD Y     I  Y   G+++    +FE  
Sbjct: 310 YNTILNGLCKEKMLSEADELFTEMTERG-VFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 368

Query: 319 ICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGE 378
           I     P    Y TL++G   G     M+   +   +M SR I+  P   S  +L+    
Sbjct: 369 IQRNLKPDVVTYNTLIDGFCKG---SEMEKVNELWNDMISRRIY--PNHISYGILINGYC 423

Query: 379 KSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
             G  + A  +WD M  +    ++        G
Sbjct: 424 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 456



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 1/162 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           +RR Y N+ S Y  ++    +         ++D+M+  G + T    ++++ G  +    
Sbjct: 405 SRRIYPNHIS-YGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 463

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                F   M   G +PD   YN LI+   K +N D+A  +  +M+   + P+  TY  +
Sbjct: 464 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 523

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           LN  +  G++     I+  M   G   D+  Y  LI  H  +
Sbjct: 524 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ 565



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + +       NT+V             +   +M+L G+ P    +++LI G +K 
Sbjct: 436 DEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 495

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F   ++M+ +G LPDV  YN +++   +     +A  I  +M +  V P+  TY
Sbjct: 496 ENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTY 555

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             L+N       L   + +  +M   G
Sbjct: 556 TSLINGHVTQNNLKEAFRVHDEMLQRG 582



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   +RN   +   YNT++           + ++++DM+   + P    +  LI G    
Sbjct: 366 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 425

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + + F   D+M   GF   +   N ++    +  N+ +A      M    + P+G TY
Sbjct: 426 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 485

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE 207
             L+N       +D  +A+V  M  +G   D   Y  ++   +   ++  A+    K+IE
Sbjct: 486 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 545



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 12/208 (5%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGA-EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           ++ ++  + G      ++ + G  +E  +   + + + YN ++              ++D
Sbjct: 167 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 226

Query: 66  DMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           +M   GV P    F +LI + +  G   Q   +FRD MK  G  PD  +Y  LI   G C
Sbjct: 227 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD-MKNAGLAPDNVIYTILIG--GFC 283

Query: 125 KNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +N    +A+++ +EM +     +  TY  +LN       L     +  +MT  G   D +
Sbjct: 284 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 343

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVE 210
            +  LI  ++      D    K + L E
Sbjct: 344 TFTTLINGYS-----KDGNMNKAVTLFE 366



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++   + Q R      +   M+  GV P R  + SLI G +  + L++ F   D+M 
Sbjct: 520 YNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 579

Query: 104 ANGFLPD 110
             GF+PD
Sbjct: 580 QRGFVPD 586


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 108/307 (35%), Gaps = 41/307 (13%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+E   RN   N   Y  ++          L  D Y+ M  DG  P    +++LI    K
Sbjct: 233 AKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGK 292

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
               +        MK  G  P +  YN LI  C  C    +A+ +++ M      PN  T
Sbjct: 293 MGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATT 352

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++A   AGQLD V  + ++M   G       Y+ LI+A                  
Sbjct: 353 YNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISA------------------ 394

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
            E++  W                    EL+N    E      G +   +T Y+    ACA
Sbjct: 395 CEKAGQWELA----------------LELFNEMAGE------GCIPNTVT-YNSLITACA 431

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           +    +    + E ++K   +PDV      I  Y   G        +E        P A 
Sbjct: 432 QGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAI 491

Query: 329 LYATLVE 335
           ++  +++
Sbjct: 492 VFNAIID 498



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 62/131 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    +   Y++++++     ++ L  +++++M  +G  P    ++SLI    +G
Sbjct: 374 QEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQG 433

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           ++ +      +QM+  G  PDV  +  LIS   K     +A+  +E+M+    KP+   +
Sbjct: 434 AQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVF 493

Query: 150 VCLLNACAAAG 160
             +++     G
Sbjct: 494 NAIIDTLWETG 504



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 89  GSRLQDTFFFRDQMKAN---GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
           G R  + F +   + AN     L DV  Y  +IS+C   ++ D+A+ + +EM+   ++ N
Sbjct: 185 GFRAVEIFEWLRNLDANHPLASLCDVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERN 244

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             TY  L+N C   G           M   GA  +   Y  LI
Sbjct: 245 VHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLI 287


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 15/311 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           E  ++    N   YN++V +L   R       +LR ++D+     +QP    + ++I G 
Sbjct: 297 EMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDN----SIQPDEVTYTAMIHGY 352

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
               R ++      +M   G +PD+  +N L+    K K S +A  IF  +     KP+ 
Sbjct: 353 SCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDI 412

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            +Y  LL+  A  G+   +  +   MT  G   D  C+  LI AH  +    D+      
Sbjct: 413 ISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKR-GMMDEALLIFT 471

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
           E+  Q    + V  +   A    MG   + +  L     +  +   +     VYH     
Sbjct: 472 EMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTV-----VYHSLIQG 526

Query: 267 -CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C     ++A E + EM+ +    P++      I    + G + N   VF   I     P
Sbjct: 527 FCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRP 586

Query: 326 PAELYATLVEG 336
               + +L++G
Sbjct: 587 DIFTFNSLIDG 597



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 9/309 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     +   +N+++ SL   +R     +++  +   G +P    +  L+ G    
Sbjct: 366 KEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATE 425

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  D       M  NG + D   +N LI+   K    D+A+ IF EM+   V PN  TY
Sbjct: 426 GRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTY 485

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             ++ A    G+L      +  M + G   +   Y  LI        + +A +  +++++
Sbjct: 486 ATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMD 545

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
                   +   +  ++  NE   ++ ++++NL     +H   G    + T   +    C
Sbjct: 546 QGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNL----VIHI--GDRPDIFTFNSLIDGYC 599

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              K  +A   L  M+    + PDV      I  Y  SG ID+G  +F + +C    P  
Sbjct: 600 LVGKMDKAFGVLDAMVSAGTE-PDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTT 658

Query: 328 ELYATLVEG 336
             Y+ +++G
Sbjct: 659 VTYSLVLDG 667



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + +++++ SL ++ R    +DV++ ++  G +P    F+SLI G     ++   F   
Sbjct: 552 NITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVL 611

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M + G  PDV  Y+ LI+   K    D  + +F EM    VKP   TY  +L+    A
Sbjct: 612 DAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRA 671

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCY 184
           G+      +  +M  +G  +    Y
Sbjct: 672 GRTSAAKKMFHEMIESGTAMSISTY 696



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMML-----DGVQPTRDLFHSLIVGTMKGSRLQD 94
           +A  YNTV+ SL    R         DM+L     DG  P    +  +I G      +  
Sbjct: 235 DAFSYNTVIKSLCGGSR----SQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISK 290

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                ++M   G +P+V  YN ++    K +  D+A  +  +M    ++P+  TY  +++
Sbjct: 291 ACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIH 350

Query: 155 ACAAAGQLDPVYAIVRDMTAAG 176
             +  G+      + ++MT  G
Sbjct: 351 GYSCLGRWKEAAKMFKEMTREG 372



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM-KANGFLPDVAVYNYLISVCGKCKNSDQ 129
           G  P    ++++I     GSR Q+      +M K +G  PDV  Y  +I          +
Sbjct: 231 GCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISK 290

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A  +F EM +  V PN  TY  +++A   A  +D    ++R M       D+  Y  +I 
Sbjct: 291 ACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIH 350

Query: 190 AHT 192
            ++
Sbjct: 351 GYS 353


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 125/311 (40%), Gaps = 13/311 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    N   YN +V +L         +DV   M+  G  P    F+SL+ G  K 
Sbjct: 203 EEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR 262

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             + D       M A G  P+V  Y+ LI   G CK+    +A  + EEMK   V P+  
Sbjct: 263 GNVDDARKLLGIMVAKGMRPNVVTYSALID--GLCKSQKFLEAKEVLEEMKTRGVTPDAF 320

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKI 205
           TY  L++    A +++    ++R M  +G   D   Y+ +I A   + K+  A  T   +
Sbjct: 321 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT---L 377

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
            E+ +Q K    V  + N   + +  + K     +   E +   G  L  ++T   V   
Sbjct: 378 QEMRKQRKSPDVV--TYNTVIDGLCKLGKIAEAQV-ILEQMQESGDVLPDVVTYSTVING 434

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C     V+A + LL+ + K   +PDV      I      G ++    + +    +   P
Sbjct: 435 LCKSDMLVEA-QKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAP 493

Query: 326 PAELYATLVEG 336
               Y TL+ G
Sbjct: 494 NVVTYTTLISG 504



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 7/176 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+  L         + + D M   G  P    + ++I G  K  RL++  +    MK
Sbjct: 428 YSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK 487

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  Y  LIS   K +  D+A R+ EEM+     PN  TY  ++N    +G++ 
Sbjct: 488 RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIK 547

Query: 164 PVYAIVRDMT--AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
               +V+ M    A    D   Y  ++ A       + D   +  +L+EQ K  +S
Sbjct: 548 EAQQLVQRMKDGRAECSPDAATYRTIVNALM-----SSDLVQEAEQLLEQMKSTTS 598



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 133/331 (40%), Gaps = 41/331 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMKGSRLQDTFFF 98
           +   YN V++   +        ++ ++M   G  P  D F H+ I+  M  +   D    
Sbjct: 111 DVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAP--DAFTHTPIITAMANAGDLDGAM- 167

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D +++ G  P+V  Y  LI+   + K  ++A+++ EEM++    PN  TY  L++A   
Sbjct: 168 -DHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 159 AGQLDPVYAIVRDMTAAGAG---------LDKFCYAG-------LITAHTNKIPRAD--- 199
              +     +V+ M   G           +D FC  G       L+     K  R +   
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 286

Query: 200 -----DTATKIIELVEQSKGWSSVETSGNNAE-----NEMMGVSKEELYNLPTAEYVHRR 249
                D   K  + +E  +    ++T G   +       + G+ K +   +  AE + RR
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKAD--KIEEAEQMLRR 344

Query: 250 --GGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
             G   +  + VY    HA C   K ++A +TL EM +K RKSPDV      I      G
Sbjct: 345 MAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM-RKQRKSPDVVTYNTVIDGLCKLG 403

Query: 307 DIDNGHKVFEDYICS-EKFPPAELYATLVEG 336
            I     + E    S +  P    Y+T++ G
Sbjct: 404 KIAEAQVILEQMQESGDVLPDVVTYSTVING 434



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMK 88
           +E  ++  + +   YNTV+  L    +    + + + M   G V P    + ++I G  K
Sbjct: 378 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCK 437

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              L +     D+M   G  PDV  Y  +I    KC   ++A  + + MK+    PN  T
Sbjct: 438 SDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 497

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           Y  L++    A ++D    ++ +M  AG      C   L+T +T
Sbjct: 498 YTTLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNT 535



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 114/279 (40%), Gaps = 12/279 (4%)

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           +V ++K ++L   FF        GF      +N L+ V  +CK   +A  +F        
Sbjct: 49  VVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASC 108

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
           +P+  +Y  +++    AG L     ++ +M +AG   D F +  +ITA  N    A D  
Sbjct: 109 EPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMAN----AGDLD 164

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV 262
             +  L       + V  +   A        +E +  L   E +  RG      L  Y+V
Sbjct: 165 GAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLL---EEMRERG--CPPNLVTYNV 219

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
              A  +L  V A + +++ + +   +P+V      +  +   G++D+  K+    +   
Sbjct: 220 LVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG 279

Query: 323 KFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
             P    Y+ L++G     + K ++ A++ L  M +R +
Sbjct: 280 MRPNVVTYSALIDG--LCKSQKFLE-AKEVLEEMKTRGV 315



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 1/170 (0%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           ++F       EE   R    +A  Y+ ++  L    +      +   M   G  P   ++
Sbjct: 298 QKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 357

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
            S+I    K  +L +      +M+     PDV  YN +I    K     +A  I E+M++
Sbjct: 358 SSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQE 417

Query: 140 Y-EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +V P+  TY  ++N    +  L     ++  M  AG   D   Y  +I
Sbjct: 418 SGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 467


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 8/254 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +M  +G+ PT  ++++ + G +K    +       +MK      +   Y  +I+V G
Sbjct: 229 VISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYG 288

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K      ++R+F EMK    KPN  TY  L+NA A  G  +    +  +M  AG   D +
Sbjct: 289 KANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 348

Query: 183 CYAGLITAHTNK-IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
            Y  L+ A++   +P+    A++I  L+E   G      S N   +      +  L+   
Sbjct: 349 AYNALMEAYSRAGLPQG---ASEIFSLMEH-MGCEPDRASYNILVD---AFGRAGLHQEA 401

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
            A +   +   +   +  + +   A A   +V   E ++  L K    PD + +   +  
Sbjct: 402 EAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNA 461

Query: 302 YLHSGDIDNGHKVF 315
           Y  +G +D+  ++F
Sbjct: 462 YGRAGRLDDMERLF 475



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 109/288 (37%), Gaps = 37/288 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V +   +       +V+++M   G +P    +++L+    +    Q      
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+  G  PD A YN L+   G+     +A   F+E+K+  ++P  ++++ LL+A A +
Sbjct: 371 SLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARS 430

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G +     ++  +  +G   D F    ++ A+  +  R DD   ++   +E+  G S+  
Sbjct: 431 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAY-GRAGRLDDM-ERLFAAMERGDGASA-- 486

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
                      G      YN+    Y   R G+L R                    ME  
Sbjct: 487 -----------GAPDTSTYNVLVNAY--GRAGYLDR--------------------MEAA 513

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              L     + DV      I  Y    +     +VFE+ + +  +P A
Sbjct: 514 FRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDA 561



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           FR  + A G   DV  +   I    + K   Q +R+FEEM      P+  T   LL AC+
Sbjct: 514 FRS-LAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACS 572

Query: 158 AAGQLDPVYAIVRDM 172
              Q++ V AIVR M
Sbjct: 573 DERQVEQVTAIVRSM 587



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 122/318 (38%), Gaps = 27/318 (8%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++ + F PD+  YN LI   G+ +   +A   +  + +    P   TY  LL A   +GQ
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ 222

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYA----GLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
           L     ++ +M   G       Y     GL+ A      R  + A ++ + +++ +  ++
Sbjct: 223 LHRAEGVISEMQRNGIPPTATVYNAYLDGLLKA------RCSEKAVEVYQRMKKERCRTN 276

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
            ZT        + G + + + +L     +   G      +  Y    +A A     +  E
Sbjct: 277 TZTY--XLMINVYGKANQPMSSLRVFREMKSVG--CKPNICTYTALVNAFAREGLCEKAE 332

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF---EDYICSEKFPPAELYATLV 334
            + E +++    PDVY     +  Y  +G      ++F   E   C    P    Y  LV
Sbjct: 333 EVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE---PDRASYNILV 389

Query: 335 EGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393
           +   FG    G+ Q A+     +  +   + P M S +LL++A  +SG       +   +
Sbjct: 390 DA--FGRA--GLHQEAEAAFQELKQQG--MRPTMKSHMLLLSAHARSGNVARCEEVMAQL 443

Query: 394 QARKITPSLPAVEAYYNG 411
               + P   A+ A  N 
Sbjct: 444 HKSGLRPDTFALNAMLNA 461



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 65/160 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R      A+ YN  +  L   R      +VY  M  +  +   + +  +I    K +
Sbjct: 232 EMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKAN 291

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +   +     +MK+ G  P++  Y  L++   +    ++A  +FEEM++   +P+   Y 
Sbjct: 292 QPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYN 351

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L+ A + AG       I   M   G   D+  Y  L+ A
Sbjct: 352 ALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDA 391


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++D+M++ G+ P    F +LI G  K  R+        QM +    PD+  YN LI   
Sbjct: 233 ELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY-- 290

Query: 122 GKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK  D  QA  + +EM    +KP+  TY  L++ C   G LD  +   + M      L
Sbjct: 291 GLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRL 350

Query: 180 DKFCYAGLITA 190
           D   Y  LI+ 
Sbjct: 351 DXVXYTALISG 361



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GVQP    +  LI G  K S+  D     D+M   G +P+   +  LI   G CKN
Sbjct: 203 MLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLID--GHCKN 260

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L   + ++ +M+  G   DK  Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 320

Query: 185 AGLI 188
             LI
Sbjct: 321 TTLI 324



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 127/314 (40%), Gaps = 20/314 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          J + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PN  
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GXCKESKXDDANELFDEMLVKGLVPNXV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
            +  L++     G++D    I + M +     D   Y  LI     K  + +A     ++
Sbjct: 249 XFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L  A E+  R      RL  V + A 
Sbjct: 309 -----SXKGLKPDKITYTTLID---GCCKEG--DLDXAFEHXKRMIQENXRLDXVXYTAL 358

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
            +  C E + V A + L EML    K PD       I  +   GD+  G K+ ++     
Sbjct: 359 ISGLCXEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417

Query: 323 KFPPAELYATLVEG 336
             P    Y  L+ G
Sbjct: 418 HVPSVVTYNVLMNG 431


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 135/333 (40%), Gaps = 14/333 (4%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
            R  + N   YN ++  L           + ++M   G  P    +++++ G  +  ++ 
Sbjct: 142 ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVS 201

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +   F D M + G+ PDV  YN L+    K   +D+A+++F+++      P+  TY  +L
Sbjct: 202 EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSIL 261

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
              A    +D    + + M A+G   +   Y+ +++ H  +  + DD A K++E  E SK
Sbjct: 262 LGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHC-RAKKVDD-AHKVLE--EMSK 317

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
             +  +    N    + G+ K  L +     +        +  +  Y V  +   +   V
Sbjct: 318 IGAVPDVVTYNI--LLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375

Query: 274 QAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
                L + + + +  PDV  + ++ +  C   +G +D    + +   CS   P    Y 
Sbjct: 376 HDARVLFDRMIERKLVPDVVTFNILMDGLC--KAGKLDEAKDLLDQMTCSGCAPDYVAYN 433

Query: 332 TLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLS 364
           TL    M G   +G  +  D L        FLS
Sbjct: 434 TL----MNGLRKQGRHIQADRLTQAMKEKGFLS 462



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE A + Y  +   YNT+++ L    +    +  +D M   G  P    ++ L+    K 
Sbjct: 173 EEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKE 232

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  +       + A G++PD   YN ++    +  N D+A  +F++M      PNG TY
Sbjct: 233 GKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATY 292

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
             +L+    A ++D  + ++ +M+  GA  D   Y  L+     TN + +A +  + +++
Sbjct: 293 SIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 352



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 17/270 (6%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
            P R  F  ++    K  +L+D +   +QM  NG  PD   YN LI    K    D+A R
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--A 190
           ++EEM    ++P+  TY  LLNA     ++     + + M   G   D   Y+ +I+   
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 191 HTNKIPRADDTA-TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
            T K+  A +    K+IE     +G S+   + N   N   G+ K+E  N+  A  +   
Sbjct: 125 KTGKVTEALEMLFHKMIE-----RGCSANTVAYNALIN---GLCKDE--NIERAYKLLEE 174

Query: 250 ---GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
               G++   +T Y+        +  V   +   + +     SPDV      +      G
Sbjct: 175 MASKGYVPDNIT-YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEG 233

Query: 307 DIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             D   K+F+D I     P    Y +++ G
Sbjct: 234 KTDEAMKLFKDVIAKGYMPDTVTYNSILLG 263



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 163/421 (38%), Gaps = 59/421 (14%)

Query: 43  EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           EYN ++     + R      +Y++M+  G++P+   ++SL+    K +++++       M
Sbjct: 45  EYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTM 104

Query: 103 KANGFLPDVAVYNYLIS----------------------------------VCGKCK--N 126
              GF PDV  Y+ +IS                                  + G CK  N
Sbjct: 105 AEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDEN 164

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            ++A ++ EEM      P+  TY  +L+     G++         M + G   D   Y G
Sbjct: 165 IERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNG 224

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           L+ A   +     D A K+ + V  +KG+     + N+    ++G++++   N+  AE +
Sbjct: 225 LLDALYKE--GKTDEAMKLFKDV-IAKGYMPDTVTYNSI---LLGLARKS--NMDEAEEM 276

Query: 247 HRR---GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRC 301
            ++    G      T Y +        K V     +LE + K    PDV  Y ++ +  C
Sbjct: 277 FKKMVASGCAPNGAT-YSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 335

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
              +  +D  H++F   + +   P    Y+ ++ G          ++  D ++       
Sbjct: 336 --KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK---- 389

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD--REVPA 419
            L P + +  +L+    K+G    A  + D M      P   A     NGL+   R + A
Sbjct: 390 -LVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQA 448

Query: 420 D 420
           D
Sbjct: 449 D 449



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 54/132 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE ++     +   YN ++  L          +++  M+ +G  P    +  ++ G  K 
Sbjct: 313 EEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKT 372

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++ D     D+M     +PDV  +N L+    K    D+A  + ++M      P+   Y
Sbjct: 373 NKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAY 432

Query: 150 VCLLNACAAAGQ 161
             L+N     G+
Sbjct: 433 NTLMNGLRKQGR 444


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 138/361 (38%), Gaps = 54/361 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++         F  + +  ++ L  ++P    + +LI    K   L+D  +  D+M 
Sbjct: 55  YNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMT 114

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
               +PDV  Y  +++   K    ++A  +F EM++  V PN  +Y  L+++    G + 
Sbjct: 115 VKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVA 174

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             + +   M   G G D   Y    TA  + + +A                        N
Sbjct: 175 EAFVLQGRMVVRGIGFDVVVY----TALMDGLFKAG---------------------MAN 209

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
           NAE+    + +E L  +P                  Y        +L DV   E LL+ +
Sbjct: 210 NAEDMFQVLLEESL--VPNC--------------VTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
           ++    P+V +    +  Y   G ++    V    +     P   +Y TL++G  F    
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDG-YFKADQ 312

Query: 344 KGMQLAQDTLVNMNSR----NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
           +G+ L  D    M SR    N F+     ++L      ++SG    A+ ++  M +R + 
Sbjct: 313 RGIAL--DLFKEMKSRGLEENNFVIDSFVNNL------KRSGRMEEADELFKDMMSRGLL 364

Query: 400 P 400
           P
Sbjct: 365 P 365



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 34/181 (18%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N    ++ V +L    R     +++ DMM  G+ P R  + S++ G  K 
Sbjct: 321 KEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKA 380

Query: 90  SRLQDTF----------------------------------FFRDQMKANGFLPDVAVYN 115
            +  D F                                   F   M+  G  PD A +N
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFN 440

Query: 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
            +I+   K  N   A+++  EMK Y +KPN  T   L+    AAG+++    ++ DM   
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVM 500

Query: 176 G 176
           G
Sbjct: 501 G 501



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 60/126 (47%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+  M+ +GV P  + ++ L+ G      +++     +QMK  G +P+   Y+ L+S  G
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  N  + ++++ EM      P  +TY  L++  A   ++     ++++M   G   +  
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS 717

Query: 183 CYAGLI 188
            Y  LI
Sbjct: 718 TYDILI 723



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 42  SEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           S YNT++++     R  ++R    V+ DMM  G+      +++LI G    S L+  F  
Sbjct: 542 STYNTLISTFC---RLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
             QM   G  P+V  YN L+      +   +A  +  +MK+  + PN  TY  L++    
Sbjct: 599 HSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +     +  +M   G
Sbjct: 659 IGNMKECVKLYCEMITKG 676



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L++ R       + + M   G+ P    +  L+ G  K   +++     
Sbjct: 610 NVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLY 669

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +M   GF+P    YN LIS   K K   QA  + +EM+   + PN  TY  L+
Sbjct: 670 CEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 6/153 (3%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRD 100
           + +  V+ + +  RR  ++  ++D ++  GV+     +++LI    + G   + T  F+D
Sbjct: 507 TTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKD 566

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            M   G L D+  YN LI   G C +S   +A  +  +M    V PN +TY  LL   +A
Sbjct: 567 MM-GKGILADIITYNALIH--GYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSA 623

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           A  +     +V  M   G   +   Y  L++ H
Sbjct: 624 ARLIKEAAGLVNQMKERGLVPNATTYDILVSGH 656



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 77/180 (42%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   ++   +   Y  ++  L    +    + V+ +M   GV P R  + +LI    K 
Sbjct: 111 DEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKE 170

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + + F  + +M   G   DV VY  L+    K   ++ A  +F+ + +  + PN  TY
Sbjct: 171 GNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTY 230

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L++     G ++    ++++M       +   Y+ ++  +T K  +  A D   K+++
Sbjct: 231 SALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQ 290



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 14  VGGALGRRFFVTSAG-AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           +GG    R    +AG   +   R    NA+ Y+ +V+             +Y +M+  G 
Sbjct: 618 LGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGF 677

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ--- 129
            P    ++ LI    KG ++        +M+  G  P+ + Y+ LI  CG  K S Q   
Sbjct: 678 VPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI--CGWYKLSKQPEL 735

Query: 130 -----------AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                      A R+FEEM +    P   T  C+    A  G+
Sbjct: 736 NKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGK 778



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 57/138 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N+   N +V  L +        D+ +DM++ G  PT     +++  + K  R        
Sbjct: 470 NSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMH 529

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQ+   G   D++ YN LIS   +     +A  +F++M    +  +  TY  L++    +
Sbjct: 530 DQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCIS 589

Query: 160 GQLDPVYAIVRDMTAAGA 177
             L   +A+   M   G 
Sbjct: 590 SHLKKAFAVHSQMLTEGV 607



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 67/161 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   ++   N   Y+++V   T +       DV   M+   + P   ++ +LI G  K 
Sbjct: 251 QEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKA 310

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +         +MK+ G   +  V +  ++   +    ++A  +F++M    + P+   Y
Sbjct: 311 DQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNY 370

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +++    AG+    + I ++MT   +G D   Y  LI  
Sbjct: 371 TSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLING 411


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 44  YNTVVTSLTSQRRF--FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           Y+ ++ SLT   +    LL+ +Y+++  D ++    L + +I+G  K        +F   
Sbjct: 247 YSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSM 306

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++A+G  P  + +  +IS  G    +++A  IFEEMK+  +KP  + +  LL   A  G 
Sbjct: 307 VQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGS 366

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           L    +I+ +M  +G   D+  Y  L+ A+ N
Sbjct: 367 LKEAESIISEMEKSGLSPDEHTYGLLVDAYAN 398



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 14/303 (4%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           RN   N   ++ ++ S   +  +    +V  +M    V+P R  ++ +I    K + L  
Sbjct: 415 RNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDH 474

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                D+M + G  PDV  +N LI    K    D+A  +FEEM++    P   TY  ++N
Sbjct: 475 AMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMIN 534

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAHTNKIPRADDTATKIIELVEQS 212
           +     + D V  ++  M + G   +   Y  L  I  H+ +   A D    +     +S
Sbjct: 535 SLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAM-----KS 589

Query: 213 KGWSSVETSGNNAENEMM--GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
            G     T  N   N     G+S++ +     A  V    G    LL +  +      + 
Sbjct: 590 AGLKPSATMYNALINAFAQRGLSEQAV----NAYRVMISDGLRPSLLALNSLINAFGEDR 645

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
           +D++A  ++L+ +K++   PDV      ++  +     D    V+E+ I S   P  +  
Sbjct: 646 RDIEAF-SILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDGKAR 704

Query: 331 ATL 333
           A L
Sbjct: 705 AML 707



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/299 (18%), Positives = 122/299 (40%), Gaps = 18/299 (6%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S +  V+++L +  R      ++++M   G++P    F++L+ G  +   L++      +
Sbjct: 317 STFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISE 376

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M+ +G  PD   Y  L+         + A  + ++M+   V+PN   +  +L +    G+
Sbjct: 377 MEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGE 436

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               + ++R+M  +    D+  Y  +I           DT  K   L    + +  + + 
Sbjct: 437 WQKTFEVLREMKNSNVKPDRHFYNVMI-----------DTFGKFNCLDHAMETYDRMLSE 485

Query: 222 GNNAE----NEMMGVSKEELYNLPTAEYVH--RRGGFLSRLLTVYHVAFHACAELKDVQA 275
           G   +    N ++   ++  Y+   AE     +  G+L    T Y++  ++  E +    
Sbjct: 486 GIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLP-CPTTYNIMINSLGEQEKWDE 544

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           ++ LL  ++     P+V      +  Y HSG  ++     E    +   P A +Y  L+
Sbjct: 545 VKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALI 603



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 35/196 (17%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R Y    + YN ++ SL  Q ++  ++ +   M   G+ P    + +L+      
Sbjct: 515 EEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHS 574

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR----------------- 132
            R  D     + MK+ G  P   +YN LI+   +   S+QA+                  
Sbjct: 575 GRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLAL 634

Query: 133 ------------------IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
                             I + MK+ +VKP+  TY  L+ A     + D V A+  +M  
Sbjct: 635 NSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMIL 694

Query: 175 AGAGLDKFCYAGLITA 190
           +G   D    A L +A
Sbjct: 695 SGCTPDGKARAMLRSA 710



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 58/124 (46%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    F ++I       R ++     ++MK  G  P +  +N L+    +  +  +A
Sbjct: 311 GLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEA 370

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             I  EM+K  + P+  TY  L++A A  G+ +    +++ M A     + F ++ ++ +
Sbjct: 371 ESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILAS 430

Query: 191 HTNK 194
           + ++
Sbjct: 431 YRDR 434


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +N    N ++ S     R      V  D++  G QP+   F +LI G     ++ +    
Sbjct: 87  HNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQL 146

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D+M   GF PDV  Y  LI+   K  N+  AIR    M++   +P    Y  ++++   
Sbjct: 147 FDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             QL    ++  DM A G   + F Y+ LI
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLI 236



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT+V +L  +        V D M+   ++P    ++SL+ G    S +  T    D M 
Sbjct: 267 FNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMV 326

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P V  Y  LI+   K +  D+A+ +FEEM +  + P+  TY  L++     G+L 
Sbjct: 327 RKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLR 386

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
              A+  +M   G   D   Y
Sbjct: 387 DAIALFHEMVVYGQIPDLVTY 407



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/400 (17%), Positives = 149/400 (37%), Gaps = 29/400 (7%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +  Y  + + + T++  L  + +      ++D M  +G QP    + +LI G  K     
Sbjct: 117 KLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTS 176

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
               F   M+     P V VY+ +I    K +   +A+ +F +M    + PN  TY  L+
Sbjct: 177 TAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLI 236

Query: 154 NACAAAGQ----LDPVYAIVR-----DMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           +     G     +   YA++      D       +D  C  G++             A  
Sbjct: 237 HGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVK-----------AHY 285

Query: 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
           +++++ QS     V T  +  +   +     +  N+   + + R+G   S  +  Y    
Sbjct: 286 VVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNV--FDTMVRKGCVPS--VISYTTLI 341

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
           +   +++ +     L E + +    PD       I    H G + +   +F + +   + 
Sbjct: 342 NGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQI 401

Query: 325 PPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
           P    Y  L     F Y  K  +LA+  ++        L P +    +++    ++G   
Sbjct: 402 PDLVTYRIL-----FDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELE 456

Query: 385 TANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRL 424
            A  ++  + ++ + P +       NGL  + + A+  +L
Sbjct: 457 AARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKL 496



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGT 86
           EE +++    +   YNT++  L    R   LRD   ++ +M++ G  P    +  L    
Sbjct: 358 EEMSQQGLIPDTVTYNTLIHGLCHVGR---LRDAIALFHEMVVYGQIPDLVTYRILFDYL 414

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKP 144
            K  RL +       ++     PD+ +Y+ ++   G C+  + +A R +F ++    + P
Sbjct: 415 CKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMD--GMCRAGELEAARDLFSKLSSKGLHP 472

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204
           + +TY  ++N     G L     +  +M   G   +  C   LI   T    R ++T  +
Sbjct: 473 DVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNA-CTYNLI---TRGFLRNNETL-R 527

Query: 205 IIELVEQ--SKGWSSVETSGNNAENEMM 230
            I+L ++  S+G+ S++ S      EM+
Sbjct: 528 AIQLFQEMLSRGF-SIDVSTTTLLVEML 554


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 123/311 (39%), Gaps = 14/311 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R +   +    + ++ SL    +    RDV+D M + G  P    ++ ++ G    
Sbjct: 313 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  PD   +N LI     C   D+A+ IF EM+ + VKP+  TY
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 432

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++ A    G++D        M   G   DK+ Y  LI        + +A +    I E
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL---ISE 489

Query: 208 LVEQSKGWSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           ++        V  S   NN       +  + +++L     +H      S L+  Y     
Sbjct: 490 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGY----- 544

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C   K  +A+     M+    + P+V +    +  Y   G ID G  +F + +     P
Sbjct: 545 -CLVGKMEKALRVFDAMVSAGIE-PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 602

Query: 326 PAELYATLVEG 336
              LY+ +++G
Sbjct: 603 STILYSIIIDG 613



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 65/155 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNTV+     +       D++ +M+  G+ P    ++S++    K   +     F 
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 277

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM     LP+   YN LI          +A+R+F+EM+++ + P+  T   L+ +    
Sbjct: 278 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G++     +   M   G   D F Y  ++  +  K
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +++++ +L    R    ++++D  +  G+ P   ++  L+ G     +++      D M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+V VY  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 562 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 621

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
           P      +MT +G  +D   Y
Sbjct: 622 PAKVKFHEMTESGIAMDICTY 642



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 133/364 (36%), Gaps = 50/364 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   YN+VV +L   R           M+   V P    +++LI G    
Sbjct: 243 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 302

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVC--GKCKNSDQAI--------------- 131
            + ++      +M+ +  LPDV   + L+ S+C  GK K +                   
Sbjct: 303 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 362

Query: 132 -----------------RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
                             +F+ M    + P+  T+  L+ A A  G LD    I  +M  
Sbjct: 363 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD 422

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS----KGWSSVETSGNNAENEMM 230
            G   D   Y  +I A   +I + DD   K  ++++Q     K   +    G      ++
Sbjct: 423 HGVKPDVVTYRTVIAALC-RIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 481

Query: 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP 290
               +EL +      +H    F S ++       + C +L  V   + + ++       P
Sbjct: 482 --KAKELISEIMNNGMHLDIVFFSSIIN------NLC-KLGRVMDAQNIFDLTVNVGLHP 532

Query: 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLA 349
           D  +    +  Y   G ++   +VF+  + +   P   +Y TLV G    G   +G+ L 
Sbjct: 533 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592

Query: 350 QDTL 353
           ++ L
Sbjct: 593 REML 596



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+V       R      ++ +M+  G++P+  L+  +I G  +  R        
Sbjct: 568 NVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKF 627

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
            +M  +G   D+  YN ++    K +  D+AI +F+E++   VK N
Sbjct: 628 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKIN 673


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 117/295 (39%), Gaps = 10/295 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +   Q       ++ D M   G++P    ++++I G  K  +        D+M 
Sbjct: 292 YNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 351

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD A YN L+  C +  N   A RIF+EM    V P+  ++  L+   +  G LD
Sbjct: 352 KIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV--ETS 221
                 RDM  AG   D   Y  LI         ++    +  E++EQ      V   T 
Sbjct: 412 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR-DEMLEQGCVLDVVTYNTI 470

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N    E M    +EL+   T      RG F       +    +  ++  ++    TL E
Sbjct: 471 LNGLCKEKMLSEADELFTEMT-----ERGVFPD--FYTFTTLINGYSKDGNMNKAVTLFE 523

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           M+ +    PDV      I  +    +++  ++++ D I    +P    Y  L+ G
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 578



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 147/395 (37%), Gaps = 37/395 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     N    N ++ +L   ++    +    DM   GV P    +++LI    + 
Sbjct: 243 QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQ 302

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             L++ F   D M   G  P V  YN +I+  G CK     +A  + +EM K  + P+  
Sbjct: 303 GLLEEAFELMDSMSGKGLKPCVFTYNAIIN--GLCKTGKYLRAKGVLDEMLKIGMSPDTA 360

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  LL  C     +     I  +M + G   D   ++ LI              +K   
Sbjct: 361 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI-----------GLLSKNGC 409

Query: 208 LVEQSKGWSSVETSGNNAENEMM----------GVSKEELYNLPTAEYVHRRGGFLSRLL 257
           L +  K +  ++ +G   +N +           GV  E    L   + +  +G  L   +
Sbjct: 410 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA---LKVRDEMLEQGCVLD--V 464

Query: 258 TVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
             Y+   +  C E    +A E   EM ++    PD Y     I  Y   G+++    +FE
Sbjct: 465 VTYNTILNGLCKEKMLSEADELFTEMTERG-VFPDFYTFTTLINGYSKDGNMNKAVTLFE 523

Query: 317 DYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAA 376
             I     P    Y TL++G   G     M+   +   +M SR I+  P   S  +L+  
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKG---SEMEKVNELWNDMISRRIY--PNHISYGILING 578

Query: 377 GEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
               G  + A  +WD M  +    ++        G
Sbjct: 579 YCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 613



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D+M+  G + T    ++++ G  +         F   M   G +PD   YN LI+   
Sbjct: 591 LWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFI 650

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K +N D+A  +  +M+   + P+  TY  +LN  +  G++     I+  M   G   D+ 
Sbjct: 651 KEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS 710

Query: 183 CYAGLITAHTNK 194
            Y  LI  H  +
Sbjct: 711 TYTSLINGHVTQ 722



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M+L G+ P    +++LI G +K   +   F   ++M+ +G LPDV  YN +++   +  
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQG 688

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
              +A  I  +M +  V P+  TY  L+N       L   + +  +M   G
Sbjct: 689 RMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRG 739



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   +RN   +   YNT++           + ++++DM+   + P    +  LI G    
Sbjct: 523 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 582

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + + F   D+M   GF   +   N ++    +  N+ +A      M    + P+G TY
Sbjct: 583 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 642

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE 207
             L+N       +D  +A+V  M  +G   D   Y  ++   +   ++  A+    K+IE
Sbjct: 643 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 702



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 12/208 (5%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGA-EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           ++ ++  + G      ++ + G  +E  +   + + + YN ++              ++D
Sbjct: 324 VFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFD 383

Query: 66  DMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           +M   GV P    F +LI + +  G   Q   +FRD MK  G  PD  +Y  LI   G C
Sbjct: 384 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRD-MKNAGLAPDNVIYTILIG--GFC 440

Query: 125 KNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +N    +A+++ +EM +     +  TY  +LN       L     +  +MT  G   D +
Sbjct: 441 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 500

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVE 210
            +  LI  ++      D    K + L E
Sbjct: 501 TFTTLINGYS-----KDGNMNKAVTLFE 523



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++   + Q R      +   M+  GV P R  + SLI G +  + L++ F   D+M 
Sbjct: 677 YNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 736

Query: 104 ANGFLPD 110
             GF+PD
Sbjct: 737 QRGFVPD 743


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +RR     ++ ++M   GV P    F +LI G  +   ++    F D + 
Sbjct: 372 YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTIS 431

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                PD+  YN LI   G C+  D  +A  ++++M   E+ PN  TY  L+++    GQ
Sbjct: 432 DQRLRPDIVTYNTLID--GMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +D  +A + +M   G   +   Y  +I  +
Sbjct: 490 VDNAFAFLDEMVNKGIVPNIMTYNSIIKGY 519



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 153/401 (38%), Gaps = 42/401 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+V+  L    R+   R+V+  M   GV P    F+ LI G  +   L++   F  +M+
Sbjct: 232 YNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMR 291

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  ++ LI +  +    D A     EM+++ + P+G  Y  ++     AG + 
Sbjct: 292 GRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLML 351

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS--KGWSSVET- 220
               +  +M A G   D   Y  L+     K  R  D    + E+ E+       +  T 
Sbjct: 352 EALRVRDEMVAFGCLPDVVTYNTLLNGLC-KERRLSDAEELLNEMKERGVPPDLCTFTTL 410

Query: 221 -----SGNNAENEMM---GVSKEEL------YNLPTAEYVHRRGGF----------LSRL 256
                   N E  +     +S + L      YN    + + R+G             SR 
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNT-LIDGMCRQGDLGKANELWDDMHSRE 469

Query: 257 LTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
           +   HV +       C + +   A   L EM+ K    P++      I+ Y  SG++  G
Sbjct: 470 IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG-IVPNIMTYNSIIKGYCRSGNVSKG 528

Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSD 370
            +        +  P    Y TL+     GY  +G M  A + L  M + N+   P   + 
Sbjct: 529 QQFLPKMRHDKVMPDLITYNTLIH----GYVKEGKMHEAFNLLKIMENENV--QPDAVTY 582

Query: 371 LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            ++++     G    A++++  M AR I P      +  NG
Sbjct: 583 NMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMING 623



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 137/351 (39%), Gaps = 50/351 (14%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D M+  G++P    ++S++ G ++  R          M A G  PDV  +N LI    
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    ++A+R ++EM+   V P+  ++ CL+      G++D     +R+M   G   D  
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGV 335

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            Y  +I             A  ++E +                 +EM+            
Sbjct: 336 IYTMVIGGFCR--------AGLMLEALR--------------VRDEMVAF---------- 363

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
                   G L  ++T Y+   +   + + +   E LL  +K+    PD+      I  Y
Sbjct: 364 --------GCLPDVVT-YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGY 414

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAEL-YATLVEG-AMFGYTPKGMQLAQDTLVNMNSRN 360
              G+I+   + F D I  ++  P  + Y TL++G    G   K  +L  D    M+SR 
Sbjct: 415 CRDGNIEKALQFF-DTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDD----MHSRE 469

Query: 361 IFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           IF  P   +  +L+ +  + G    A    D M  + I P++    +   G
Sbjct: 470 IF--PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKG 518



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 140/359 (38%), Gaps = 63/359 (17%)

Query: 32  YARRNYANNASEYNTVVTSLTSQRRFFLLRD----------------------VYDDMML 69
           + RR   ++A+EY      L   R F L+ D                      V D+M+ 
Sbjct: 309 FTRRGEMDHAAEY------LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVA 362

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NS 127
            G  P    +++L+ G  K  RL D     ++MK  G  PD+  +  LI   G C+  N 
Sbjct: 363 FGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIH--GYCRDGNI 420

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
           ++A++ F+ +    ++P+  TY  L++     G L     +  DM +     +   Y+ L
Sbjct: 421 EKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSIL 480

Query: 188 ITAHTNKIPRADDTATKIIELVEQS------------KGWSSVETSGNNAENEMMGVSKE 235
           I +H  K  + D+    + E+V +             KG+     SGN        VSK 
Sbjct: 481 IDSHCEK-GQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCR---SGN--------VSKG 528

Query: 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIV 295
           + + LP      R    +  L+T Y+   H   +   +     LL++++ +   PD    
Sbjct: 529 QQF-LPKM----RHDKVMPDLIT-YNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTY 582

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF-GYTPKGMQLAQDTL 353
              I  +   G++     V++        P    Y +++ G +  G + K  QL  + L
Sbjct: 583 NMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEML 641



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 1/154 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   YN+++            +     M  D V P    +++LI G +K 
Sbjct: 498 DEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKE 557

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ + F     M+     PD   YN +IS      N  +A  ++++M    ++P+  TY
Sbjct: 558 GKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTY 617

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKF 182
           + ++N    AG     + +  +M   G A  DKF
Sbjct: 618 MSMINGHVVAGNSKKSFQLHDEMLQKGLAPDDKF 651


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 269 SQSLSPDLITYNTLIY--GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD+  Y  L + 
Sbjct: 327 LDSAFEHRKRMIQENIRLDEVAYTALXSG 355



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  GVQP    +  LI G  K S++ D     D+M   G +P+   +  LI   G CKN
Sbjct: 197 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID--GHCKN 254

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L   + ++ +M+  G   DK  Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITY 314

Query: 185 AGLI 188
             LI
Sbjct: 315 TTLI 318



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 24/297 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 125 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A     ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--RLLTVYHV 262
            ++ ++  K   +    G   E ++             + + HR+       RL  V + 
Sbjct: 303 SVKGLKPDKITYTTLIDGCCKEGDL------------DSAFEHRKRMIQENIRLDEVAYT 350

Query: 263 AFHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           A  +  C E + V A + L EML    K PD       I  +   GD+  G K+ ++
Sbjct: 351 ALXSGLCQEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKE 406



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +        + D+M + G++P +  + +LI G  K   L   F  R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMI 338

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  L S +C + ++ D A ++  EM    +KP+ +TY  ++N     G +
Sbjct: 339 QENIRLDEVAYTALXSGLCQEGRSVD-AEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 WKGSKLLKEMQRDG 411


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 138/361 (38%), Gaps = 54/361 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++         F  + +  ++ L  ++P    + +LI    K   L+D  +  D+M 
Sbjct: 55  YNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMT 114

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
               +PDV  Y  +++   K    ++A  +F EM++  V PN  +Y  L+++    G + 
Sbjct: 115 VKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVA 174

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             + +   M   G G D   Y    TA  + + +A                        N
Sbjct: 175 EAFVLQGRMVVRGIGFDVVVY----TALMDGLFKAG---------------------MAN 209

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
           NAE+    + +E L  +P                  Y        +L DV   E LL+ +
Sbjct: 210 NAEDMFQVLLEESL--VPNC--------------VTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
           ++    P+V +    +  Y   G ++    V    +     P   +Y TL++G  F    
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDG-YFKADQ 312

Query: 344 KGMQLAQDTLVNMNSR----NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
           +G+ L  D    M SR    N F+     ++L      ++SG    A+ ++  M +R + 
Sbjct: 313 RGIAL--DLFKEMKSRGLEENNFVIDSFVNNL------KRSGRMEEADELFKDMMSRGLL 364

Query: 400 P 400
           P
Sbjct: 365 P 365



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 34/181 (18%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N    ++ V +L    R     +++ DMM  G+ P R  + S++ G  K 
Sbjct: 321 KEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKA 380

Query: 90  SRLQDTF----------------------------------FFRDQMKANGFLPDVAVYN 115
            +  D F                                   F   M+  G  PD A +N
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFN 440

Query: 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
            +I+   K  N   A+++  EMK Y +KPN  T   L+    AAG+++    ++ DM   
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVM 500

Query: 176 G 176
           G
Sbjct: 501 G 501



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 60/126 (47%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+  M+ +GV P  + ++ L+ G      +++     +QMK  G +P+   Y+ L+S  G
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  N  + ++++ EM      P  +TY  L++  A   ++     ++++M   G   +  
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS 717

Query: 183 CYAGLI 188
            Y  LI
Sbjct: 718 TYDILI 723



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 42  SEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           S YNT++++     R  ++R    V+ DMM  G+      +++LI G    S L+  F  
Sbjct: 542 STYNTLISTFC---RLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
             QM   G  P+V  YN L+      +   +A  +  +MK+  + PN  TY  L++    
Sbjct: 599 HSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +     +  +M   G
Sbjct: 659 IGNMKECVKLYCEMITKG 676



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L++ R       + + M   G+ P    +  L+ G  K   +++     
Sbjct: 610 NVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLY 669

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +M   GF+P    YN LIS   K K   QA  + +EM+   + PN  TY  L+
Sbjct: 670 CEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 77/180 (42%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   ++   +   Y  ++  L    +    + V+ +M   GV P R  + +LI    K 
Sbjct: 111 DEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKE 170

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + + F  + +M   G   DV VY  L+    K   ++ A  +F+ + +  + PN  TY
Sbjct: 171 GNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTY 230

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L++     G ++    ++++M       +   Y+ ++  +T K  +  A D   K+++
Sbjct: 231 SALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQ 290



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRD 100
           + +  V+ + +  RR  ++   +D ++  GV+     +++LI    + G   + T  F+D
Sbjct: 507 TTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKD 566

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            M   G L D+  YN LI   G C +S   +A  +  +M    V PN +TY  LL   +A
Sbjct: 567 MM-GKGILADIITYNALIH--GYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSA 623

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           A  +     +V  M   G   +   Y  L++ H
Sbjct: 624 ARLIKEAAGLVNQMKERGLVPNATTYDILVSGH 656



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 14  VGGALGRRFFVTSAG-AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           +GG    R    +AG   +   R    NA+ Y+ +V+             +Y +M+  G 
Sbjct: 618 LGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGF 677

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ--- 129
            P    ++ LI    KG ++        +M+  G  P+ + Y+ LI  CG  K S Q   
Sbjct: 678 VPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI--CGWYKLSKQPEL 735

Query: 130 -----------AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                      A R+FEEM +    P   T  C+    A  G+
Sbjct: 736 NKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGK 778



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 57/138 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N+   N +V  L +        D+ +DM++ G  PT     +++  + K  R        
Sbjct: 470 NSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXH 529

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQ+   G   D++ YN LIS   +     +A  +F++M    +  +  TY  L++    +
Sbjct: 530 DQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCIS 589

Query: 160 GQLDPVYAIVRDMTAAGA 177
             L   +A+   M   G 
Sbjct: 590 SHLKKAFAVHSQMLTEGV 607



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 67/161 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   ++   N   Y+++V   T +       DV   M+   + P   ++ +LI G  K 
Sbjct: 251 QEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKA 310

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +         +MK+ G   +  V +  ++   +    ++A  +F++M    + P+   Y
Sbjct: 311 DQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNY 370

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +++    AG+    + I ++MT   +G D   Y  LI  
Sbjct: 371 TSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLING 411


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +  A +   YN ++     +       +++++M   GV+ T   + +LI    K 
Sbjct: 645 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 704

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++Q+T    D+    G  PD+ +YN LI+      N D+A  I  EM+K  + P+  TY
Sbjct: 705 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 764

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+      G++D    ++ +MT  G   D   Y  LI+ ++ K
Sbjct: 765 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMK 809



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 1/166 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMK 88
           E   R   A N   Y TV++      R      V+D+M+  G V+P   ++++LI G   
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             +L     +RD+M   G    VA YN L+          +A  + EEM    + P+  T
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Y  L+N     G +     I  +M+  G       Y  LI A + K
Sbjct: 659 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 704



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 143/391 (36%), Gaps = 54/391 (13%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVG 85
           A A E  R+    NA  YNTV+    S+ R     D+  +M    G+ P +  + ++I G
Sbjct: 500 ARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 559

Query: 86  TMKGSRLQDTFFFRDQMKANGFL-PDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEV 142
             K  R+ +     D+M   G + P+  +YN LI   G C     D A+   + M +  V
Sbjct: 560 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG--GYCDQGKLDTALLYRDRMVERGV 617

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
                TY  L++A    G+    Y +V +M   G   D F Y  LI  H       +   
Sbjct: 618 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK-----EGNV 672

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV 262
            K +E+ E                                   + RRG  +   +  Y  
Sbjct: 673 KKALEIFEN----------------------------------MSRRG--VRATVVTYTA 696

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             +A ++   VQ  + L +   +    PD+ +    I  +  SG+ID   ++  +     
Sbjct: 697 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 756

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y TL+ G  + G   +  +L  +    M  R I   P + +   L++     G
Sbjct: 757 IAPDDVTYNTLMRGLCLLGRVDEARKLIDE----MTERGI--QPDLVTYNTLISGYSMKG 810

Query: 382 GYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               A  I + M  +   P+L    A   GL
Sbjct: 811 DVKDALRIRNEMMNKGFNPTLLTYNALIQGL 841



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 69/171 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR    +   YN ++ S ++        ++  +M    + P    +++L+ G    
Sbjct: 715 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 774

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +     D+M   G  PD+  YN LIS      +   A+RI  EM      P   TY
Sbjct: 775 GRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 834

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             L+      GQ D    +V++M   G   D   Y  LI   T +  RA D
Sbjct: 835 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAID 885



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 1/181 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  +RR        Y  ++ +L+ + +      ++D+ +  G++P   L+++LI      
Sbjct: 680 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 739

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F    +M+     PD   YN L+         D+A ++ +EM +  ++P+  TY
Sbjct: 740 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 799

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++  +  G +     I  +M   G       Y  LI     K  + DD    + E+V
Sbjct: 800 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLC-KNGQGDDAENMVKEMV 858

Query: 210 E 210
           E
Sbjct: 859 E 859


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P+  ++++ I G MKG   Q      ++MK +   P  A Y  LI++ G
Sbjct: 155 VFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYG 214

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K   S  A+++F EM+  + KPN  T+  L+NA A  G  +    I   +  AG   D +
Sbjct: 215 KASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVY 274

Query: 183 CYAGLITAHT 192
            Y  L+ A++
Sbjct: 275 AYNALMEAYS 284



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 53/121 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R ++  +   YN ++ +   +  +      Y +++     PT D +  L+        L+
Sbjct: 91  RSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLE 150

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +M+  GF P   VYN  I    K  ++ +A+ IFE MK+   +P+  TY  L+
Sbjct: 151 KAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLI 210

Query: 154 N 154
           N
Sbjct: 211 N 211



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 57/121 (47%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ +   G++P    +++L+    +             M+  G  PD A YN ++   
Sbjct: 259 EIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 318

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+    + A  +FE MK+  + P  ++++ LL+A + AG++     IV  M  +G   D 
Sbjct: 319 GRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDT 378

Query: 182 F 182
           F
Sbjct: 379 F 379



 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 110/297 (37%), Gaps = 13/297 (4%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           + F PDV  YN LI   G+     +A   + E+ +    P   TY  LL A   +G L+ 
Sbjct: 92  SSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEK 151

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK-GWSSVETSGN 223
             A+  +M   G       Y     A+ + + +  DT  K +E+ E+ K       T+  
Sbjct: 152 AEAVFAEMRKYGFPPSAVVY----NAYIDGLMKGGDT-QKAVEIFERMKRDRCQPSTATY 206

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                + G + +    L    +   R       +  +    +A A     +  E + E L
Sbjct: 207 TMLINLYGKASKSYMALKV--FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQL 264

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
           ++    PDVY     +  Y  +G      ++F         P    Y  +V+     Y  
Sbjct: 265 QEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD----AYGR 320

Query: 344 KGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            G+      +  +  R + ++P M S +LL++A  ++G       I + M    I P
Sbjct: 321 AGLHEDAQAVFEVMKR-LGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKP 376


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +  A +   YN ++     +       +++++M   GV+ T   + +LI    K 
Sbjct: 276 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 335

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++Q+T    D+    G  PD+ +YN LI+      N D+A  I  EM+K  + P+  TY
Sbjct: 336 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 395

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+      G++D    ++ +MT  G   D   Y  LI+ ++ K
Sbjct: 396 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMK 440



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 1/166 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMK 88
           E   R   A N   Y TV++      R      V+D+M+  G V+P   ++++LI G   
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             +L     +RD+M   G    VA YN L+          +A  + EEM    + P+  T
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 289

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Y  L+N     G +     I  +M+  G       Y  LI A + K
Sbjct: 290 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 335



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 143/391 (36%), Gaps = 54/391 (13%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVG 85
           A A E  R+    NA  YNTV+    S+ R     D+  +M    G+ P +  + ++I G
Sbjct: 131 ARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 190

Query: 86  TMKGSRLQDTFFFRDQMKANGFL-PDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEV 142
             K  R+ +     D+M   G + P+  +YN LI   G C     D A+   + M +  V
Sbjct: 191 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG--GYCDQGKLDTALLYRDRMVERGV 248

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
                TY  L++A    G+    Y +V +M   G   D F Y  LI  H       +   
Sbjct: 249 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK-----EGNV 303

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV 262
            K +E+ E                                   + RRG  +   +  Y  
Sbjct: 304 KKALEIFEN----------------------------------MSRRG--VRATVVTYTA 327

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             +A ++   VQ  + L +   +    PD+ +    I  +  SG+ID   ++  +     
Sbjct: 328 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 387

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y TL+ G  + G   +  +L  +    M  R I   P + +   L++     G
Sbjct: 388 IAPDDVTYNTLMRGLCLLGRVDEARKLIDE----MTERGI--QPDLVTYNTLISGYSMKG 441

Query: 382 GYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               A  I + M  +   P+L    A   GL
Sbjct: 442 DVKDALRIRNEMMNKGFNPTLLTYNALIQGL 472



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 69/171 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR    +   YN ++ S ++        ++  +M    + P    +++L+ G    
Sbjct: 346 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 405

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +     D+M   G  PD+  YN LIS      +   A+RI  EM      P   TY
Sbjct: 406 GRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 465

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             L+      GQ D    +V++M   G   D   Y  LI   T +  RA D
Sbjct: 466 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAID 516



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 1/182 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  +RR        Y  ++ +L+ + +      ++D+ +  G++P   L+++LI      
Sbjct: 311 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 370

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F    +M+     PD   YN L+         D+A ++ +EM +  ++P+  TY
Sbjct: 371 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 430

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++  +  G +     I  +M   G       Y  LI     K  + DD    + E+V
Sbjct: 431 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLC-KNGQGDDAENMVKEMV 489

Query: 210 EQ 211
           E 
Sbjct: 490 EN 491


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +  A +   YN ++     +       +++++M   GV+ T   + +LI    K 
Sbjct: 650 EEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 709

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++Q+T    D+    G  PD+ +YN LI+      N D+A  I  EM+K  + P+  TY
Sbjct: 710 GQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 769

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+      G++D    ++ +MT  G   D   Y  LI+ ++ K
Sbjct: 770 NTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMK 814



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 1/166 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMK 88
           E   R   A N   Y TV++      R      V+D+M+  G V+P   ++++LI G   
Sbjct: 544 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 603

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             +L     +RD+M   G    VA YN L+          +A  + EEM    + P+  T
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 663

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Y  L+N     G +     I  +M+  G       Y  LI A + K
Sbjct: 664 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 709



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 143/391 (36%), Gaps = 54/391 (13%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVG 85
           A A E  R+    NA  YNTV+    S+ R     D+  +M    G+ P +  + ++I G
Sbjct: 505 ARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 564

Query: 86  TMKGSRLQDTFFFRDQMKANGFL-PDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEV 142
             K  R+ +     D+M   G + P+  +YN LI   G C     D A+   + M +  V
Sbjct: 565 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG--GYCDQGKLDTALLYRDRMVERGV 622

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
                TY  L++A    G+    Y +V +M   G   D F Y  LI  H       +   
Sbjct: 623 AMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK-----EGNV 677

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV 262
            K +E+ E                                   + RRG  +   +  Y  
Sbjct: 678 KKALEIFEN----------------------------------MSRRG--VRATVVTYTA 701

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             +A ++   VQ  + L +   +    PD+ +    I  +  SG+ID   ++  +     
Sbjct: 702 LIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKR 761

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y TL+ G  + G   +  +L  +    M  R I   P + +   L++     G
Sbjct: 762 IAPDDVTYNTLMRGLCLLGRVDEARKLIDE----MTERGI--QPDLVTYNTLISGYSMKG 815

Query: 382 GYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               A  I + M  +   P+L    A   GL
Sbjct: 816 DVKDALRIRNEMMNKGFNPTLLTYNALIQGL 846



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 69/171 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR    +   YN ++ S ++        ++  +M    + P    +++L+ G    
Sbjct: 720 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 779

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +     D+M   G  PD+  YN LIS      +   A+RI  EM      P   TY
Sbjct: 780 GRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 839

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             L+      GQ D    +V++M   G   D   Y  LI   T +  RA D
Sbjct: 840 NALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAID 890



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 1/181 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  +RR        Y  ++ +L+ + +      ++D+ +  G++P   L+++LI      
Sbjct: 685 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 744

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F    +M+     PD   YN L+         D+A ++ +EM +  ++P+  TY
Sbjct: 745 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTY 804

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++  +  G +     I  +M   G       Y  LI     K  + DD    + E+V
Sbjct: 805 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLC-KNGQGDDAENMVKEMV 863

Query: 210 E 210
           E
Sbjct: 864 E 864


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 156/377 (41%), Gaps = 12/377 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMK 416

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ E M + E ++PN +T   L+ A     ++
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKI 476

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +  + IV  M + G   D   +  L  A++ +I         II  +  +K   +V T G
Sbjct: 477 EEAWNIVYKMQSFGVKPDAVTFNTLARAYS-RIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
                       EE        Y  +  G    L  V++        + D+  +  ++++
Sbjct: 536 TIVNGYCEEGKMEEALRF---FYRMKELGVHPNLF-VFNSLIKGFLNINDMDGVGEVVDL 591

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYT 342
           +++    PDV      +  +   GD+    +++ D +     P    ++ L +G      
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 343 PKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR-KITPS 401
           P   + A+  L  M  R   + P +     +++    +G    A  +++ M+    ++P+
Sbjct: 652 P---EKAEQILNQM--RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPN 706

Query: 402 LPAVEAYYNGLKDREVP 418
           L   E    G  + + P
Sbjct: 707 LTTYETLIWGFGEAKQP 723



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 52/101 (51%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   
Sbjct: 341 IFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASS 400

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +  N DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLE 441


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           T+  L++     G++D    I + M +     D   Y  LI
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 283



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M+ +G+ P    F +LI G  K  R+        QM 
Sbjct: 209 YSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++     G 
Sbjct: 269 SQSLSPDLITYNTLIY--GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L+  +   + M      LD   Y  LI+ 
Sbjct: 327 LETAFEYRKIMIKENIRLDDVAYTALISG 355



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   GVQP    +  LI G  K S++ D     D+M  NG +P+   +  LI   G CKN
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID--GHCKN 254

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L     ++ +M+  G   DK  Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 185 AGLI 188
             LI
Sbjct: 315 TTLI 318



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   + T++       R  L  ++Y  M+   + P    +++LI G  K   L+      
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  PD   Y  LI   G CK  D   A    + M K  ++ +   Y  L++   
Sbjct: 300 DEMSMKGLKPDKITYTTLID--GSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLC 357

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G+      ++R+M + G  L+   Y  +I     K
Sbjct: 358 QEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKK 394



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K   L+  F +R  M 
Sbjct: 279 YNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +K    TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKLEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLMKEMQRDG 411


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 44   YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
            YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K +R++      ++M
Sbjct: 1363 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 1422

Query: 103  KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
               GF P  A Y  LI   GK K  D A  +F+E+K+     + + Y  ++     AG+L
Sbjct: 1423 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 1482

Query: 163  DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
            D    +  +M   G   D + Y  L++  A T  +  A  T  ++ E
Sbjct: 1483 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 1529



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 3/181 (1%)

Query: 41   ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            A  YN+++  L  + ++  +  +Y++M  +G   P    + +LI    K  R        
Sbjct: 1184 AQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLL 1243

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            ++MK  G  P   +Y  LI++  K  ++  A+ +FEEM+    +P+  TY  L+     A
Sbjct: 1244 NEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 1303

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            G++D  Y    +M   G   D      +I     K  R DD A K+ + +E  +   SV 
Sbjct: 1304 GRIDEAYHFFCEMQREGCRPDTVFMNNMIN-FLGKAGRLDD-AMKLFQEMETLRCIPSVV 1361

Query: 220  T 220
            T
Sbjct: 1362 T 1362



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 73/153 (47%)

Query: 38   ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
            +++A  Y  ++  L    R     +++D+M   G  P    +++L+ G  +   L +   
Sbjct: 1463 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 1522

Query: 98   FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               +M+ +G +PD+  YN +++   K     +A+ +   MK+  V+P+  +Y  +L A +
Sbjct: 1523 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALS 1582

Query: 158  AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             AG  +    ++++M   G   D   Y+ ++ A
Sbjct: 1583 HAGMFEEASKLMKEMNTLGFEYDLITYSSILEA 1615



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 9/151 (5%)

Query: 57   FFLLRD------VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD 110
            FF   D      ++++M     +P    +  LI G  K  R+ + + F  +M+  G  PD
Sbjct: 1265 FFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPD 1324

Query: 111  VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIV 169
                N +I+  GK    D A+++F+EM+     P+  TY  ++ A   +  +   V +  
Sbjct: 1325 TVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWF 1384

Query: 170  RDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
              M  +G     F Y+ LI     TN++ +A
Sbjct: 1385 ERMKESGISPSSFTYSILIDGFCKTNRMEKA 1415



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 70/161 (43%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE   + +    + Y +++ +L   +R+ L  +++ ++  +    +  ++  +I    K 
Sbjct: 1420 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKA 1479

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             RL D     D+M   G  PDV  YN L+S   +    D+A+     M+++   P+  +Y
Sbjct: 1480 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 1539

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +LN  A  G       ++ +M  +    D   Y  ++ A
Sbjct: 1540 NIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGA 1580



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 64   YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
            + +M  +G +P     +++I    K  RL D      +M+    +P V  YN +I    +
Sbjct: 1313 FCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFE 1372

Query: 124  CKN-SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
             K+ + +    FE MK+  + P+  TY  L++      +++    ++ +M   G      
Sbjct: 1373 SKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPA 1432

Query: 183  CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
             Y  LI A   K  R  D A ++ + ++++ G SS
Sbjct: 1433 AYCSLIDA-LGKAKRY-DLACELFQELKENCGSSS 1465


>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Glycine max]
          Length = 711

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 13/211 (6%)

Query: 12  KSVGGALGRRFFVTSAGAE------EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           + V GAL + F V    +E      E  ++  ++NA  YNT++ +     R      ++ 
Sbjct: 339 EEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFI 398

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M   G++ T   F+ L+    +  + +       +M+  G  P+   Y  LIS  GK K
Sbjct: 399 EMKTKGIKHTEATFNILMYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQK 458

Query: 126 N-SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           N SD A   F +MKK  +KP   +Y  L++A + +G  +  YA   +M   G       Y
Sbjct: 459 NMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETY 518

Query: 185 AGLITAHTNKIPRADDTAT--KIIELVEQSK 213
             L+ A      RA DT T  KI +L+ + K
Sbjct: 519 TALLDA----FRRAGDTQTLMKIWKLMRRYK 545



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 115/293 (39%), Gaps = 26/293 (8%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           + T+L S R F   RDV+             ++++ I G +   R +D +   + M+A+ 
Sbjct: 255 LFTNLPSGREF---RDVH-------------VYNAAISGLLSSGRCEDAWKVYESMEADN 298

Query: 107 FLPDVAVYNYLISVCGKCKNSDQ-AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
            LPD    + ++ V  K  +S + A + FE+M    VK   +    L+ +    G +   
Sbjct: 299 VLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEA 358

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225
             I+ ++   G   +   Y  L+ A+  K  R ++     IE+  ++KG    E + N  
Sbjct: 359 LIILSELEKKGVSSNAIVYNTLMDAYC-KSNRVEEAEGLFIEM--KTKGIKHTEATFNIL 415

Query: 226 ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM--ETLLEML 283
              M   S++    +        +   L      Y     A  + K++  M  +  L+M 
Sbjct: 416 ---MYAYSRKMQPEIVEKLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKM- 471

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           KKD   P  +     I  Y  SG  +  +  FE+       P  E Y  L++ 
Sbjct: 472 KKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDA 524



 Score = 38.9 bits (89), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 52/128 (40%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           L  ++  M    V+ TR  F++L+ G  K    ++      +    G  P V  YN L++
Sbjct: 534 LMKIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVMTYNMLMN 593

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
              +     +   + EEM  + +KP+  TY  ++ A          +   ++M  +G  +
Sbjct: 594 AYARGGQHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLRVRDFSQAFFYHQEMVKSGQVI 653

Query: 180 DKFCYAGL 187
           D   Y  L
Sbjct: 654 DFNSYQKL 661


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 1/165 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y      L   +++  L  + D+M+     P    +  +I   +   R Q    +  +MK
Sbjct: 27  YVAFAHCLMRVQKWVALEILVDEMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMK 86

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+ +YN LI   GK  N  QA++ F ++K   + P+  TY  +L+AC   G +D
Sbjct: 87  LLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNID 146

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
                +++M  AG   D+  Y+ LI     K  R +D A    EL
Sbjct: 147 KGNETLKEMREAGIKPDQVAYSILIDMF-GKAGRHEDAAATFREL 190



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +N   +   Y  V+    +  RF   +  +  M L G  P   +++ LI+   K 
Sbjct: 48  DEMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKR 107

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
                   +  Q+K  G LPD   Y  ++S C K  N D+     +EM++  +KP+   Y
Sbjct: 108 GNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAY 167

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L++    AG+ +   A  R++  +G   D   Y  LI A
Sbjct: 168 SILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHA 208



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 110/274 (40%), Gaps = 16/274 (5%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M   G++P +  +  LI    K  R +D      +++ +G+LPD   YN LI    K  
Sbjct: 154 EMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVG 213

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
             DQA  +F+E ++     +   +  ++   A A   D    +++ M   G   ++  Y 
Sbjct: 214 MVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYG 273

Query: 186 GLITAHTNKIPRADDT--ATKIIELVEQSK---GWSSVETSGNNAENEMMGVSKEELYNL 240
            ++ A      RA+    A K+ E +++S    G S+  T  N         + EEL   
Sbjct: 274 SVLNAFM----RANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLA- 328

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
                  R+ GF  R +  Y        ++  +Q    L   +K+     ++ +    + 
Sbjct: 329 -----KMRQLGF-RRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLD 382

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
            Y  +G I++  ++  +   S+  P    Y TL+
Sbjct: 383 MYGKAGRINDAERLMAELKDSKLVPDTVTYTTLI 416



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +LI    K  +LQ+       MK  G   ++ VYN ++ + GK    + A R+  E+K
Sbjct: 342 YSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELK 401

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             ++ P+  TY  L+NA    G+ +    +     A G  LD+   A +I  +
Sbjct: 402 DSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVY 454



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + ++ + G  P    +++LI    K G   Q T  F++  ++   L D  ++  +I V  
Sbjct: 187 FRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFC-LDDPVIFYTMIQVYA 245

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K + +DQA+ + + MK+  ++PN   Y  +LNA   A Q      +  +M  +     + 
Sbjct: 246 KARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGES 305

Query: 183 CYAGLITAHT 192
            Y  ++  ++
Sbjct: 306 TYITMLNVYS 315


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/381 (20%), Positives = 155/381 (40%), Gaps = 36/381 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L    R     +++  M  +   P    ++++I+G     R +D +   ++++
Sbjct: 287 YTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLR 346

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P V  +N +++  GK +  D+A+ +FE MKK + +PN  TY  +++     G+++
Sbjct: 347 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVE 405

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y I+ +M  A        +  L+T +        D   K  +L E  K + S    G 
Sbjct: 406 EAYRILDEMEHAS------LFPNLLTVNI-----MVDRLCKARKLEEAYKIFESASQRGC 454

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA-----------FHACAELKD 272
           N +        + L      +  +R      ++L   H A           F      +D
Sbjct: 455 NPDCVTYCSLIDGLGKKGQVDEAYR---LFEKMLDAGHNANPVVYTSLIRNFFIHGRKED 511

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
               +   E++++  K PD+ ++   + C   +G+++ G  +FED       P    Y+ 
Sbjct: 512 --GHKIFKELIRRGCK-PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSI 568

Query: 333 LVEGAMFGYTPKGMQLAQDTLVN-MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD 391
           L+     G T  G       + + M  +   L  R  +   +V    KSG    A  I +
Sbjct: 569 LIH----GLTKAGQARETSNIFHAMKQQGFALDARAYNA--VVDGFCKSGKVHKAYEILE 622

Query: 392 LMQARKITPSLPAVEAYYNGL 412
            M+ + + P++    A  +GL
Sbjct: 623 EMKEKCVQPTVATYGAIVDGL 643



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ +A +A  YN VV       +     ++ ++M    VQPT   + +++ G  K  RL 
Sbjct: 591 QQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD 650

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           + +   ++ K+ G   +V +Y+ LI   GK    D+A  I EEM K  + PN  T+  LL
Sbjct: 651 EAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL 710

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A   A +++      + M       + + Y+ LI
Sbjct: 711 DALVKAEEINEALVCFQSMKEMKCPPNTYTYSILI 745



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 141/352 (40%), Gaps = 34/352 (9%)

Query: 2   RLLQSIYRHHKSVGGALGRRFFVTSAGAE------EYARRNYANNASEYNTVVTSLTSQR 55
           ++L + +  +  V  +L R FF+     +      E  RR    + +  NT +  +    
Sbjct: 483 KMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAG 542

Query: 56  RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115
                R +++D+   G  P    +  LI G  K  + ++T      MK  GF  D   YN
Sbjct: 543 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 602

Query: 116 YLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            ++   G CK+    +A  I EEMK+  V+P   TY  +++  A   +LD  Y +  +  
Sbjct: 603 AVVD--GFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAK 660

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-----KGWSSVETSGNNAE-- 226
           + G  L+   Y+ LI     K+ R D+    + E++++        W+S+  +   AE  
Sbjct: 661 SKGIELNVVLYSSLIDGF-GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 719

Query: 227 NEMMGV--SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
           NE +    S +E+   P   Y              Y +  +    ++         + ++
Sbjct: 720 NEALVCFQSMKEM-KCPPNTY-------------TYSILINGLCRVQKYNKAFVFWQDMQ 765

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           K    P+V      I      G+I + + +FE +  +   P A  +  L+EG
Sbjct: 766 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEG 817



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    R    +   +N+++T L  +R+      +++ M  D  +P    ++ +I     G
Sbjct: 343 ERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLG 401

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++ +   D+M+     P++   N ++    K +  ++A +IFE   +    P+  TY
Sbjct: 402 GRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 461

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++     GQ+D  Y +   M  AG   +   Y  LI
Sbjct: 462 CSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 500



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S Y  ++ +L   RR     ++   M   G +    LF +L+    +  ++ D     D+
Sbjct: 180 SAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDE 239

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K +   PD+ +YN  I   GK  N D A + F E+K   +KP+  +Y  ++     AG+
Sbjct: 240 VKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 299

Query: 162 LDPVYAIVRDMTA 174
           L     +   M A
Sbjct: 300 LGEAEELFAQMEA 312



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 56/116 (48%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L   +++      + DM   G+ P    + ++I G  K   + D +   
Sbjct: 737 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLF 796

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           ++ KANG +PD A +N LI        + +A ++FEE +    + N ++ + LL+A
Sbjct: 797 ERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDA 852



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 69/164 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    N   Y++++       R      + ++MM  G+ P    ++SL+   +K 
Sbjct: 657 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKA 716

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + +       MK     P+   Y+ LI+   + +  ++A   +++M+K  + PN  TY
Sbjct: 717 EEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTY 776

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +++  A  G +   Y++     A G   D   +  LI   +N
Sbjct: 777 TTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSN 820



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    N   +N+++ +L            +  M      P    +  LI G  + 
Sbjct: 692 EEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRV 751

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +    F F   M+  G +P+V  Y  +IS   K  N   A  +FE  K     P+  ++
Sbjct: 752 QKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASF 811

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGL 187
             L+   + A +    Y +  +    G  ++ K C + L
Sbjct: 812 NALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLL 850



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 11/278 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T+V +L  + +      + D++    ++P   L++  I    K   +   + F  ++K
Sbjct: 217 FTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELK 276

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  PD   Y  +I V  K     +A  +F +M+     P    Y  ++    +AG+ +
Sbjct: 277 AQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFE 336

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y ++  +   G       +  ++T    K  R  D A  + E++++    +   +S  
Sbjct: 337 DAYKLLERLRERGCIPSVVSFNSILTCLGKK--RKVDEALSLFEVMKKD---AEPNSSTY 391

Query: 224 NAENEM--MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
           N   +M  +G   EE Y +   E  H        LLTV  +    C   K  +A + + E
Sbjct: 392 NIIIDMLCLGGRVEEAYRI-LDEMEH--ASLFPNLLTVNIMVDRLCKARKLEEAYK-IFE 447

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
              +   +PD       I      G +D  +++FE  +
Sbjct: 448 SASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 485



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 60/150 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +++   N+S YN ++  L    R      + D+M    + P     + ++    K  
Sbjct: 378 EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 437

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L++ +   +     G  PD   Y  LI   GK    D+A R+FE+M       N   Y 
Sbjct: 438 KLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYT 497

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            L+      G+ +  + I +++   G   D
Sbjct: 498 SLIRNFFIHGRKEDGHKIFKELIRRGCKPD 527



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 109/276 (39%), Gaps = 10/276 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M+  G      ++ SLI       R +D      ++   G  PD+ + N  +    
Sbjct: 480 LFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVF 539

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    ++   IFE+++ Y   P+ ++Y  L++    AGQ      I   M   G  LD  
Sbjct: 540 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 599

Query: 183 CYAGLIT--AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
            Y  ++     + K+ +    A +I+E +++     +V T G   +        +E Y L
Sbjct: 600 AYNAVVDGFCKSGKVHK----AYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYML 655

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
              E    +G  L+ +L  Y        ++  +     +LE + K   +P+VY     + 
Sbjct: 656 --FEEAKSKGIELNVVL--YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLD 711

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             + + +I+     F+     +  P    Y+ L+ G
Sbjct: 712 ALVKAEEINEALVCFQSMKEMKCPPNTYTYSILING 747


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++++M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 209 YSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK    +QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 269 SQSLLPDLITYNTLIY--GLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 327 LDTAFEHRKRMIQENIRLDDVAYTALISG 355



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 24/307 (7%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           + F +  A  EE     Y  +   +N ++     +    L + V+D +   G++P+   +
Sbjct: 115 KYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSY 174

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM 137
           ++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +FEEM
Sbjct: 175 NTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLIN--GLCKESKMDDANELFEEM 232

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--I 195
               + PNG T+  L++     G++D    + + M +     D   Y  LI     K  +
Sbjct: 233 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGAL 292

Query: 196 PRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
            +A D   ++       KG    + +     +   G  KE   +L TA + HR+   +  
Sbjct: 293 NQAHDLMDEM-----SMKGLKPDKITYTTLID---GCCKEG--DLDTA-FEHRK-RMIQE 340

Query: 256 LLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
            + +  VA+ A     C E + V A + + EML    K PD       I  +   GD+  
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLK-PDTGTYTMIINEFCKKGDVWK 399

Query: 311 GHKVFED 317
           G K+ ++
Sbjct: 400 GSKLLKE 406



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M + G++P +  + +LI G  K   L   F  R +M 
Sbjct: 279 YNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMI 338

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM  + +KP+  TY  ++N     G +
Sbjct: 339 QENIRLDDVAYTALISGLCQEGRSVD-AEKMMREMLSFGLKPDTGTYTMIINEFCKKGDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 WKGSKLLKEMQRDG 411


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 138/361 (38%), Gaps = 54/361 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++         F  + +  ++ L  ++P    + +LI    K   L+D  +  D+M 
Sbjct: 55  YNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMT 114

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
               +PDV  Y  +++   K    ++A  +F EM++  V PN  +Y  L+++    G + 
Sbjct: 115 VKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVA 174

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             + +   M   G G D   Y    TA  + + +A                        N
Sbjct: 175 EAFVLQGRMVVRGIGFDVVVY----TALMDGLFKAG---------------------MAN 209

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
           NAE+    + +E L  +P                  Y        +L DV   E LL+ +
Sbjct: 210 NAEDMFQVLLEESL--VPNC--------------VTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
           ++    P+V +    +  Y   G ++    V    +     P   +Y TL++G  F    
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDG-YFKADQ 312

Query: 344 KGMQLAQDTLVNMNSR----NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
           +G+ L  D    M SR    N F+     ++L      ++SG    A+ ++  M +R + 
Sbjct: 313 RGIAL--DLFKEMKSRGLEENNFVIDSFVNNL------KRSGRMEEADELFKDMMSRGLL 364

Query: 400 P 400
           P
Sbjct: 365 P 365



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 34/181 (18%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N    ++ V +L    R     +++ DMM  G+ P R  + S++ G  K 
Sbjct: 321 KEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKA 380

Query: 90  SRLQDTF----------------------------------FFRDQMKANGFLPDVAVYN 115
            +  D F                                   F   M+  G  PD A +N
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFN 440

Query: 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
            +I+   K  N   A+++  EMK Y +KPN  T   L+    AAG+++    ++ DM   
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVM 500

Query: 176 G 176
           G
Sbjct: 501 G 501



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 60/126 (47%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+  M+ +GV P  + ++ L+ G      +++     +QMK  G +P+   Y+ L+S  G
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  N  + ++++ EM      P  +TY  L++  A   ++     ++++M   G   +  
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS 717

Query: 183 CYAGLI 188
            Y  LI
Sbjct: 718 TYDILI 723



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 42  SEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           S YNT++++     R  ++R    V+ DMM  G+      +++LI G    S L+  F  
Sbjct: 542 STYNTLISTFC---RLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
             QM   G  P+V  YN L+      +   +A  +  +MK+  + PN  TY  L++    
Sbjct: 599 HSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +     +  +M   G
Sbjct: 659 IGNMKECVKLYCEMITKG 676



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L++ R       + + M   G+ P    +  L+ G  K   +++     
Sbjct: 610 NVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLY 669

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +M   GF+P    YN LIS   K K   QA  + +EM+   + PN  TY  L+
Sbjct: 670 CEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRD 100
           + +  V+ + +  RR  ++  ++D ++  GV+     +++LI    + G   + T  F+D
Sbjct: 507 TTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKD 566

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            M   G L D+  YN LI   G C +S   +A  +  +M    V PN +TY  LL   +A
Sbjct: 567 MM-GKGILADIITYNALIH--GYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSA 623

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
           A  +     +V  M   G   +   Y  L++ H  KI    +      E++  +KG+
Sbjct: 624 ARLIKEAAGLVNQMKERGLVPNATTYDILVSGH-GKIGNMKECVKLYCEMI--TKGF 677



 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 77/180 (42%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   ++   +   Y  ++  L    +    + V+ +M   GV P R  + +LI    K 
Sbjct: 111 DEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKE 170

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + + F  + +M   G   DV VY  L+    K   ++ A  +F+ + +  + PN  TY
Sbjct: 171 GNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTY 230

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE 207
             L++     G ++    ++++M       +   Y+ ++  +T K  +  A D   K+++
Sbjct: 231 SALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQ 290



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 14  VGGALGRRFFVTSAG-AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           +GG    R    +AG   +   R    NA+ Y+ +V+             +Y +M+  G 
Sbjct: 618 LGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGF 677

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ--- 129
            P    ++ LI    KG ++        +M+  G  P+ + Y+ LI  CG  K S Q   
Sbjct: 678 VPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI--CGWYKLSKQPEL 735

Query: 130 -----------AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                      A R+FEEM +    P   T  C+    A  G+
Sbjct: 736 NKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGK 778



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 57/138 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N+   N +V  L +        D+ +DM++ G  PT     +++  + K  R        
Sbjct: 470 NSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMH 529

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQ+   G   D++ YN LIS   +     +A  +F++M    +  +  TY  L++    +
Sbjct: 530 DQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCIS 589

Query: 160 GQLDPVYAIVRDMTAAGA 177
             L   +A+   M   G 
Sbjct: 590 SHLKKAFAVHSQMLTEGV 607



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 67/161 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   ++   N   Y+++V   T +       DV   M+   + P   ++ +LI G  K 
Sbjct: 251 QEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKA 310

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +         +MK+ G   +  V +  ++   +    ++A  +F++M    + P+   Y
Sbjct: 311 DQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNY 370

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +++    AG+    + I ++MT   +G D   Y  LI  
Sbjct: 371 TSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLING 411


>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++PT   F +LI G  +  +L    +F ++MK NG +PDV  Y  +I+     +  ++A
Sbjct: 347 GIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKA 406

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +FEEM   E+ PN  TY  ++     AG+ D   ++ ++M   G   +   Y  L++ 
Sbjct: 407 QEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMERKGCSPNSVVYITLVSC 466

Query: 191 HTNKIPRADDTATKIIELVEQSK 213
             N   R  D    I ++ E  K
Sbjct: 467 LRNA-GRVADAREVIKQMTETGK 488



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 18/188 (9%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV-GTMKGSRLQD 94
           NY      YN ++ S     ++ L+  VY+ M+LDG   +  L +++++    +  ++  
Sbjct: 226 NYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDGGFSSDILTYNIVIYAKYRLGKVDQ 285

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVC---------------GKCKNSDQAIRIFEEMKK 139
                 +M  NGF PD   YN L+                  GK K   +A+++   M++
Sbjct: 286 VLTLLGEMDRNGFSPDFHTYNILLHAISKGDIGKGDLDKEDLGKEKEQFKALKLLNYMRE 345

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
             ++P    +  L++  + AG+LD       +M   G   D   Y  +IT +   + R  
Sbjct: 346 TGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYV--VAREL 403

Query: 200 DTATKIIE 207
           + A ++ E
Sbjct: 404 EKAQEMFE 411



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/249 (16%), Positives = 89/249 (35%), Gaps = 14/249 (5%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G+      +N LI  CG+   +   +  F + K +  +P   +Y  +L++    
Sbjct: 185 DEMIGKGYKATARTFNILIRTCGEAGLAKTLVERFIKSKSFNYRPFKHSYNAILHSFLVL 244

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS------- 212
            Q   +  +   M   G          ++     ++ + D   T + E+           
Sbjct: 245 NQYKLIEWVYEQMLLDGGFSSDILTYNIVIYAKYRLGKVDQVLTLLGEMDRNGFSPDFHT 304

Query: 213 -----KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
                   S  +    + + E +G  KE+   L    Y+   G  +   +  +       
Sbjct: 305 YNILLHAISKGDIGKGDLDKEDLGKEKEQFKALKLLNYMRETG--IEPTVLHFTTLIDGF 362

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
           +    + A +     +KK+   PDV      I  Y+ + +++   ++FE+ +  E  P  
Sbjct: 363 SRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKAQEMFEEMLSKELVPNV 422

Query: 328 ELYATLVEG 336
             Y +++ G
Sbjct: 423 FTYNSMIRG 431


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 118/319 (36%), Gaps = 14/319 (4%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N   YNT++  L   ++     D+ + M  DG+ P    ++SLI G     R  D  
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M      PDV  +N LI  C K     +A   +EEM +  + P+  TY  L+   
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
               +LD    +   M + G   D   Y+ LI  +  K  + +       E+ ++     
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC-KSKKVEHGMKLFCEMSQRG---- 356

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--LTVYHVAFHACAELKDVQ 274
                 N     ++         L  AE + RR  F      +  Y+V  H   +   ++
Sbjct: 357 ---VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               +L  ++K+    D+      IR    +G++ +   ++    C    P    Y T+ 
Sbjct: 414 KALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTM- 472

Query: 335 EGAMFGYTPKGMQLAQDTL 353
              M G   KG++   D L
Sbjct: 473 ---MLGLYKKGLRREADAL 488



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 68/152 (44%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +N    N ++       +  L       M+  G +P+   F SL+ G  +G R+ D  + 
Sbjct: 114 HNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYM 173

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            DQM   G+ P+V +YN +I    K K  D A+ +   M+K  + P+  TY  L++   +
Sbjct: 174 FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS 233

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +G+      +V  MT      D F +  LI A
Sbjct: 234 SGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 52/279 (18%), Positives = 115/279 (41%), Gaps = 16/279 (5%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           ++++ ++++++  +++ ++  +++ M + G+       + L+    + S+L     F  +
Sbjct: 82  ADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGK 141

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           M   G  P +  +  L++  G C+      A+ +F++M     KPN   Y  +++    +
Sbjct: 142 MIKLGHEPSIVTFGSLLN--GFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKS 199

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            Q+D    ++  M   G G D   Y  LI+   +    +D  AT+++  + + + +  V 
Sbjct: 200 KQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD--ATRMVSCMTKREIYPDVF 257

Query: 220 TSG---NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
           T     +    E      EE Y     E + RR   L   +  Y +  +       +   
Sbjct: 258 TFNALIDACVKEGRVSEAEEFY-----EEMIRRS--LDPDIVTYSLLIYGLCMYSRLDEA 310

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
           E +   +      PDV      I  Y  S  +++G K+F
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E ++R    N   Y  ++       +  +  +++  M+  GV P    ++ L+ G     
Sbjct: 351 EMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNG 410

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQT 148
           +++        M+ NG   D+  YN +I   G CK  +   A  I+  +    + P+  T
Sbjct: 411 KIEKALVILADMQKNGMDADIVTYNIIIR--GMCKAGEVADAWDIYCSLNCQGLMPDIWT 468

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           Y  ++      G      A+ R M   G  L   CY 
Sbjct: 469 YTTMMLGLYKKGLRREADALFRKMKEDGI-LPNECYV 504


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 14/192 (7%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNY----ANNASEYNTVVTSLTSQRRFF 58
           + +S+ +H  +  G L  RFF       E+AR+      A+    Y+TVVTSL   R++ 
Sbjct: 72  IAESVLKHLDN-AGMLAYRFF-------EWARKQKRGVCAHTVRSYHTVVTSLAKIRQYQ 123

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           L+ DV   M  +GV    + F  ++    +  +L +  +  + M+  G   ++A +N L+
Sbjct: 124 LMWDVVAIMRKEGVANV-ETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLL 182

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
           S   K KN  +A  IF++M      P+ +TY  LL     A  L  +  +  DM AAG  
Sbjct: 183 SALCKSKNVRKAQEIFDKMNN-RFSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQ 241

Query: 179 LDKFCYAGLITA 190
            D   Y  ++ A
Sbjct: 242 PDIVTYGIMVDA 253



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V +L    R      V  DM   G QPT  ++  L+       R++D       M+
Sbjct: 247 YGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDME 306

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G +PDV VYN LI+   K K  + A R+ ++M+ + + PN +T+  +LN   + G+ D
Sbjct: 307 KDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDD 366

Query: 164 PVYAIVRDM 172
             Y + R M
Sbjct: 367 EAYRVFRSM 375



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           DM  DG+ P   ++++LI    K  + ++ F   D M+ +G  P+   +N +++      
Sbjct: 304 DMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLG 363

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             D+A R+F  M K   KP+  TY  ++ 
Sbjct: 364 KDDEAYRVFRSMIK-RCKPDSDTYTMMIK 391



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF--FRDQ 101
           YN ++T+    ++F     V DDM   G+ P    ++ +I+ T+      D  +  FR  
Sbjct: 317 YNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWN-IILNTLISLGKDDEAYRVFRSM 375

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K     PD   Y  +I +  +    + A+++++ M+  +  P+  T+  L+N     G+
Sbjct: 376 IKRCK--PDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGE 433

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++ DM   G
Sbjct: 434 VSQACVLLEDMIEKG 448


>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 484

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 71/150 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     ++     F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNFMIWGFFLSGKVDTANRFFEXMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +   +PDV  YN +I+   + K  ++    F EMK   ++P   TY  L+    +  ++D
Sbjct: 178 SREIMPDVITYNTMINGYYRVKKMEEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDRID 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+ L+    N
Sbjct: 238 DALRLVEEMKGFGINPNAITYSTLLPGLCN 267



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E    R    +   YNT++      ++     + + +M    ++PT   + 
Sbjct: 171 RFF------EXMKSREIMPDVITYNTMINGYYRVKKMEEXENYFMEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KK 139
           +LI G +   R+ D     ++MK  G  P+   Y+ L+      +   +A  I +EM  K
Sbjct: 225 TLIKGYVSVDRIDDALRLVEEMKGFGINPNAITYSTLLPGLCNAEKMSEAQSILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPR 197
           Y    +   ++ L++     G LD    +++ M       +   Y  LI       +  R
Sbjct: 285 YIAPKDNSIFLRLISGQCKVGNLDAAADVLKVMIRLSVPTEAGHYGVLIENCCKAGQYDR 344

Query: 198 ADDTATKIIE 207
           A     K+IE
Sbjct: 345 AVKFLDKVIE 354


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++++M  +GV+P R  F+SLI    +GS  +D+     +M+  G   D+  YN LI   
Sbjct: 291 DIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAV 350

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    + A  I   M+   + PN  TY  +++     G  +    +  DM  +G   D+
Sbjct: 351 CKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDR 410

Query: 182 FCYAGLITAHTNKIPRADD--TATKIIELV 209
             Y  LI  +  K+ R DD  TA K +E V
Sbjct: 411 VSYNTLIDIYA-KLGRFDDALTACKDMERV 439



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 102/259 (39%), Gaps = 35/259 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++       RF        DM   G++     +++LI    K  + +D     D+MK
Sbjct: 413 YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMK 472

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G +P+V  Y+ LI    K      A  IF E K+  +KP+   Y  L+++C   G ++
Sbjct: 473 AEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVE 532

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH-----------------TNKIPRADDTATKII 206
               ++++MT AG   +   Y  LI A+                  N   +  D +T+II
Sbjct: 533 DAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEII 592

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF-LSRLLTVYHVAFH 265
                        TS  NA N+  GV       L      H    F L   +  +    +
Sbjct: 593 ---------CKTLTSQQNA-NDHTGV-------LAAVSVFHEMQQFGLKPNVVTFSAILN 635

Query: 266 ACAELKDVQAMETLLEMLK 284
           AC+    +Q    LLE ++
Sbjct: 636 ACSRCSSLQEASVLLEQMR 654



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR    +   YNT++ ++    +  L   +   M L  + P    + ++I G  K  
Sbjct: 330 EMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLG 389

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             ++       MK +G  PD   YN LI +  K    D A+   ++M++  +K +  TY 
Sbjct: 390 CFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYN 449

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
            L++A    G+      +   M A G   +   Y+ LI A++      D T+
Sbjct: 450 ALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATS 501



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 1/147 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++++L    +  +  DV++     G       + +++    +  R ++       MK 
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 262

Query: 105 NGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            G  P++  YN +I  CGK   +  +A+ IFEEM+K  V+P+  T+  L+  C+     +
Sbjct: 263 AGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWE 322

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +  +M   G   D F Y  LI A
Sbjct: 323 DSQRVFAEMQRRGIEQDIFTYNTLIDA 349


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 76/190 (40%), Gaps = 21/190 (11%)

Query: 14  VGGALGRRFFVTSAGAEEYARRNYANNA----------------SEYNTVVTSLTS---Q 54
           + G  G   F  SA    YAR    N A                  YN V+ +       
Sbjct: 225 IAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVD 284

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
            RF L    +  M+ D + P R  F+SL+    +   L+D     D+M   G   D+  Y
Sbjct: 285 LRFTL--GYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTY 342

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N  I    KC N + A+++  +M+   VKPN  TY  L++  +   + D    +   M +
Sbjct: 343 NTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKS 402

Query: 175 AGAGLDKFCY 184
            G  LD+ CY
Sbjct: 403 LGIQLDRVCY 412



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 106/246 (43%), Gaps = 7/246 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+       ++  +  V D+M   G++     ++SLI G  K  RL    F    M+
Sbjct: 412 YNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMR 471

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  Y+ LI +  K      A  ++ + K+  +KP+   +   ++  A  G ++
Sbjct: 472 RRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVE 531

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH-TNKIPRADDTATKIIELVEQSKGW----SSV 218
              +++ DMT  G   +   Y  +I A   +K+   +D     + +V    G     ++ 
Sbjct: 532 WALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQIIRAANP 591

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
            T G +A +  M  S+E  + L   + + ++G  +   +  +    +AC+   + +    
Sbjct: 592 VTRGRSAIDVRMRRSQELYFILELFQKMVQQG--VRPNVVTFSAILNACSRCNNFEDAAL 649

Query: 279 LLEMLK 284
           LLE L+
Sbjct: 650 LLEQLR 655



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 1/144 (0%)

Query: 48  VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107
           + +L    R  L R  +D  +  G   T     +LI    +   + +     + MK  G 
Sbjct: 205 IGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGL 264

Query: 108 LPDVAVYNYLISVCGKCKNSDQ-AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
            P    YN +I  CGK     +  +  F +M +  + P+ +T+  LL+AC+ AG L+   
Sbjct: 265 RPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDAR 324

Query: 167 AIVRDMTAAGAGLDKFCYAGLITA 190
           A+  +M   G G D + Y   I A
Sbjct: 325 ALFDEMIHLGIGRDIYTYNTFIDA 348



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT + ++       L   V  DM    V+P    + +LI G  K  +  +     ++MK
Sbjct: 342 YNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMK 401

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G   D   YN ++++  K     +   + +EM+   ++ +  TY  L+N     G+LD
Sbjct: 402 SLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLD 461

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  +V+DM   G       Y+ LI  ++
Sbjct: 462 IVSFLVQDMRRRGVAPSVLTYSTLIDIYS 490



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 69/154 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +N   N   Y+T++   +   ++     +Y+ M   G+Q  R  +++++   +K  +  +
Sbjct: 368 KNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGE 427

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                D+M+ +G   D   YN LI+  GK    D    + ++M++  V P+  TY  L++
Sbjct: 428 IAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLID 487

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             + AG     + +  D   +G   D   ++  I
Sbjct: 488 IYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFI 521


>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
          Length = 1005

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 129/346 (37%), Gaps = 65/346 (18%)

Query: 29  AEEYARRNYAN----NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AE   RR++ +    +   YNT + ++    R      +YD M+  GV P+   ++++I 
Sbjct: 697 AENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMIS 756

Query: 85  GTMKGSRLQDT--FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
              +G +L      F + +    G   D   Y  LIS  GK   S +A  +F EM++  +
Sbjct: 757 VYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGI 816

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
           KP   +Y  ++N  A AG       + + M   G   D   Y  LI A+T          
Sbjct: 817 KPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSF------- 869

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR------RGGFLSRL 256
            K +E                 AE  +M +  E +  LP+  + ++      + GF    
Sbjct: 870 -KFLE-----------------AEETIMSMQNEGV--LPSCVHFNQLLSAFAKAGFTEEA 909

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
             VYH    A                      SPDV      +R YL  G ++ G   FE
Sbjct: 910 ERVYHTLLSAGL--------------------SPDVACYRTMLRGYLDYGCVEKGITFFE 949

Query: 317 DYICSEKFPPAELYATLVEGAMFGYTPKGMQL-AQDTLVNMNSRNI 361
                E   P      ++  A+  Y   G +L A+  L +M S  I
Sbjct: 950 Q--IRESVEPDRF---IMSSAVHFYKLAGKELEAEGILDSMKSLGI 990



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 137/329 (41%), Gaps = 18/329 (5%)

Query: 66  DMMLDGVQPTRDLFHSLIV--GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           + ML  +Q  +   H  ++    +K   ++++F    +MK  GF+P+   Y+ LIS+  K
Sbjct: 266 NFMLSSLQ--KKSLHGKVIDFSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSK 323

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N D+AI+++E+M+   + P+  T   LL      G      ++  +M       D+  
Sbjct: 324 TGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVI 383

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
           Y GL+     K+   +D A K  +  EQ    ++ +T    A+  +   + E+   L   
Sbjct: 384 Y-GLLIRIYGKLGLYED-AEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEK--ALTIM 439

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
           E +  R  + SR    Y V        +D+ + E   + L K    PD       +  Y+
Sbjct: 440 ELMRSRNIWFSRF--SYIVLLQCYVMKEDLASAEATFQALSKT-GLPDAGSCNDMLNLYI 496

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIF 362
               ++      +D+I   +  P E    L +  M  Y  KGM + A+  +  M +  +F
Sbjct: 497 KLDLLEKA----KDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLF 552

Query: 363 LSPRMGSDLLLVAAG--EKSGGYTTANYI 389
                   L L+     + +GG + A+++
Sbjct: 553 KDSEFIQTLSLILKMLLKTAGGLSVASHL 581



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 57/141 (40%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y+DM    + P+     SL+    K            +M+ N  + D  +Y  LI + G
Sbjct: 333 LYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYG 392

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    + A + F+E ++  +  N +TY+ +      +G  +    I+  M +      +F
Sbjct: 393 KLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRF 452

Query: 183 CYAGLITAHTNKIPRADDTAT 203
            Y  L+  +  K   A   AT
Sbjct: 453 SYIVLLQCYVMKEDLASAEAT 473


>gi|307110307|gb|EFN58543.1| hypothetical protein CHLNCDRAFT_140648 [Chlorella variabilis]
          Length = 877

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +   Y   + + +   R+     ++DDM   G +PT   + ++I     G + Q    
Sbjct: 286 APSVHAYTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAAVISACAAGGQWQKAVG 345

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             D M A G  PDV     LI+  G     ++A ++ E M + E+KPN +TY  L+ A  
Sbjct: 346 LFDDMLAWGVRPDVVSCTALITALGTDGQWERAEKVVEWMLRSEIKPNVRTYTALITALG 405

Query: 158 AAGQLDPVYAIVRDM 172
            A Q D    IV+ M
Sbjct: 406 NARQWDRALDIVKRM 420



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 40/93 (43%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            R   K +   P V  Y   +    +    + A+ I+++M+    KP G  Y  +++ACA
Sbjct: 276 MRSSPKDSRMAPSVHAYTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAAVISACA 335

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           A GQ      +  DM A G   D      LITA
Sbjct: 336 AGGQWQKAVGLFDDMLAWGVRPDVVSCTALITA 368



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P+   + + +    +G R +      D M+A G  P    Y  +IS C       +A+ +
Sbjct: 287 PSVHAYTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAAVISACAAGGQWQKAVGL 346

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           F++M  + V+P+  +   L+ A    GQ +    +V  M  +    +   Y  LITA  N
Sbjct: 347 FDDMLAWGVRPDVVSCTALITALGTDGQWERAEKVVEWMLRSEIKPNVRTYTALITALGN 406

Query: 194 KIPRADDTATKIIE 207
              R  D A  I++
Sbjct: 407 A--RQWDRALDIVK 418



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P+   + + +   + GS +       +   A     D  +   LI VCG+  ++D+A
Sbjct: 210 GLTPSVFTYTAAMRAALTGSMMDRALQVWEDALAAKCEVDCRLCTTLIEVCGRKGDTDRA 269

Query: 131 IRIFEEM----KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
           +  + +M    K   + P+   Y   + A +  G+ +   +I  DM AAG       YA 
Sbjct: 270 LAAYAQMRSSPKDSRMAPSVHAYTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAA 329

Query: 187 LITA 190
           +I+A
Sbjct: 330 VISA 333



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 37/94 (39%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V D     G  P    +  LI         +     RD+M A G  P V VYN LI+ C 
Sbjct: 750 VLDRAQTLGFAPRDYAYCGLIAAHSFKGDWRAALRVRDRMAAAGLAPSVHVYNALIAACD 809

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           +    ++A+ +  +M +  V  N  T   L   C
Sbjct: 810 RAHQYERAMEVARDMGRAGVPTNSVTQSLLDGVC 843


>gi|298705285|emb|CBJ48975.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 674

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 72/153 (47%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +    +  +++   + ++     + +DM+ DG+ P    + SL+V   +G + +    
Sbjct: 317 AKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIK 376

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             D M++ G +P+V  Y+  I+ C   K   +A+ + +EM++  V PN  +Y   + AC 
Sbjct: 377 ILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACG 436

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            AGQL     ++ +M + G       Y   + A
Sbjct: 437 DAGQLSEALDLMDEMESRGVKASVVTYGTAVAA 469



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 118/313 (37%), Gaps = 31/313 (9%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   Y  ++++   +  +    +  + M   G+ P   ++ ++I    +  + Q 
Sbjct: 139 RGIRPNVFTYGALISACAKRGNWEDSVNYLEQMRQSGLAPNAVIYSTVISACERSDQWQK 198

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  M+ +G LP    YN +IS CGK      A+ + +EM      P   T+   + 
Sbjct: 199 AVKLLRTMRRDGILPVTVTYNTVISACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAML 258

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRAD------DTATKII 206
           AC  A Q   V  I+  M      +DK+ Y   I A     K  R        D+     
Sbjct: 259 ACERARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAK 318

Query: 207 ELVEQSKGWSSVETSGNNAENEMM-------GVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
           ++V  S   S+    G  A+ E +       G++   +    +   V RRGG   R + +
Sbjct: 319 DVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTP-NVITYTSLMVVLRRGGQHERAIKI 377

Query: 260 ---------------YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                          Y VA  ACA+ K+ +    LL+ ++++  SP+       IR    
Sbjct: 378 LDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACGD 437

Query: 305 SGDIDNGHKVFED 317
           +G +     + ++
Sbjct: 438 AGQLSEALDLMDE 450



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 54/122 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+  + +    + +     +  +M  +GV P    +++ I       +L +     
Sbjct: 389 NVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACGDAGQLSEALDLM 448

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M++ G    V  Y   ++ C +  +   A+ +   M++ +++PN   Y  ++ AC AA
Sbjct: 449 DEMESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRREQIEPNEIVYGGIIKACCAA 508

Query: 160 GQ 161
           GQ
Sbjct: 509 GQ 510



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            FR+  K  G  P+V  Y  LIS C K  N + ++   E+M++  + PN   Y  +++AC
Sbjct: 131 IFREMTKERGIRPNVFTYGALISACAKRGNWEDSVNYLEQMRQSGLAPNAVIYSTVISAC 190

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + Q      ++R M   G       Y  +I+A
Sbjct: 191 ERSDQWQKAVKLLRTMRRDGILPVTVTYNTVISA 224



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P+ D     +  T      ++ +     +      P+V  YN +I+ C   K   +A
Sbjct: 73  GVHPSGDNLGVSVTSTSAAEEEKEEW----PLAVPAVEPNVVSYNNVITACANAKKQKRA 128

Query: 131 IRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             IF EM K   ++PN  TY  L++ACA  G  +     +  M  +G   +   Y+ +I+
Sbjct: 129 EGIFREMTKERGIRPNVFTYGALISACAKRGNWEDSVNYLEQMRQSGLAPNAVIYSTVIS 188

Query: 190 A 190
           A
Sbjct: 189 A 189



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 47/128 (36%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D M   GV P    +   I         +       +M+  G  P+   YN  I  CG
Sbjct: 377 ILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACG 436

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                 +A+ + +EM+   VK +  TY   + AC  A        ++  M       ++ 
Sbjct: 437 DAGQLSEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRREQIEPNEI 496

Query: 183 CYAGLITA 190
            Y G+I A
Sbjct: 497 VYGGIIKA 504


>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 481

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAXRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   T+  L+    A  ++D
Sbjct: 178 SRDITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +V +M   G   +   Y+  +    N
Sbjct: 238 DALRLVEEMKGFGIKPNAITYSTXLPGLCN 267



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 11/209 (5%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R+   +   YNT++      ++       + +M    ++PT     
Sbjct: 171 RFF------EDMKSRDITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN-YLISVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   R+ D     ++MK  G  P+   Y+  L  +C   K S+    + E + K
Sbjct: 225 TLIKGYVAVDRVDDALRLVEEMKGFGIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP--R 197
           Y    +   ++ L++    AG LD    +++ M       +   Y  LI  +   +   +
Sbjct: 285 YIAPTDNSIFLRLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAVQYDK 344

Query: 198 ADDTATKIIE--LVEQSKGWSSVETSGNN 224
           A     K+IE  ++ + +  S +E S  N
Sbjct: 345 AISLLDKLIEKDIILRPQSTSHMEPSAYN 373


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 157/416 (37%), Gaps = 82/416 (19%)

Query: 15  GGALGRRFFVTSAGAEEYARRNY----ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
            G L  RFF       E+ARR      A+    Y+TVV SL   R++ L+ DV   M  +
Sbjct: 81  AGMLAYRFF-------EWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKE 133

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV    + F  ++    +  +  +  +  + M+  G   ++A +N L+    K KN  +A
Sbjct: 134 GVANV-ETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKNVRKA 192

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             IF++M      P+ +TY  LL     A  L  +  +  DM AAG   D   Y G++  
Sbjct: 193 QEIFDKMNN-RFSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTY-GIMVD 250

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
              K  R ++    + ++   S+G                          PT        
Sbjct: 251 ALCKTGRVEEAVCVVQDM--SSRGCQ------------------------PTT------- 277

Query: 251 GFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
                   +Y V  H    +++   A+ T L+M +KD   PDV +    +  +      D
Sbjct: 278 -------FIYSVLVHTYGVDMRIEDAVATFLDM-EKDGIVPDVVVYNALVTAFCKVKKFD 329

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNS--------RNI 361
           N  +V +D                +EG       +   +  +TL+++          RN+
Sbjct: 330 NAFRVMDD----------------MEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNM 373

Query: 362 FLSPRMGSD--LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415
               +  SD   +++    ++     A  +W  M+ ++  PS+       NGL D+
Sbjct: 374 IKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDK 429



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF--FRDQ 101
           YN +VT+    ++F     V DDM   G+ P    ++ +I+ T+      D  +  FR+ 
Sbjct: 315 YNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWN-IILNTLISLGKDDEAYRVFRNM 373

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K     PD   Y  +I +  +    + A+++++ M+  +  P+  T+  L+N     G+
Sbjct: 374 IKRCK--PDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGE 431

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++ DM   G
Sbjct: 432 VSQACVLLEDMIEKG 446


>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 957

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 141/337 (41%), Gaps = 45/337 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   +R    +A  Y T++ +L    R      +++D++++ ++P   L+  +I    K 
Sbjct: 166 EAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHILNKE 225

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +D       M+A G LPD  +YN +I   GK     ++  ++ +MKK  + P+  TY
Sbjct: 226 GRTEDAVHTFKDMRAAGHLPDELLYNTIICALGKLGRYQESEALYLDMKKQGIVPSKFTY 285

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--------TNKIPRADDT 201
             ++N  + AG+       + +M  +G   D+  Y  +I  +          KI +  DT
Sbjct: 286 TIMINVWSKAGRFASAAETLAEMQRSGCIADEVVYCSIINMYGKAGLYEEAEKIFKEMDT 345

Query: 202 ATKIIELVEQSKGWSSVET----SGNNAEN-EMMGVSKEE-----LYNLPTAEYVHRRGG 251
               + L+   K ++S+      +G +AE  ++  V  E+          T  +   R G
Sbjct: 346 ----LGLLSHEKSYTSMAKVRAEAGRHAEALKLFDVMAEKGLLTTRMTWNTLLHCFVRIG 401

Query: 252 FLSRLLTVYHVAFHAC--------------AELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
            + +   VY+    A               ++ + V+  E LL  +++    PD YI   
Sbjct: 402 DVEQATKVYNDMVEAGSANVVTYGNMINLYSKFQMVEDAENLLAEMRESGVKPDEYIYGS 461

Query: 298 NIRCYLHSGDIDNGHKVFEDY-------ICSEK--FP 325
            ++ Y +S  ID    V ++        +C+E+  FP
Sbjct: 462 FVKLYCNSDMIDKATMVVQEMKDDGLESVCNEREMFP 498



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 1/175 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y+ +   Y T++       +  L  +   +M+  GV+P       ++    +  R     
Sbjct: 103 YSPSVIAYTTLLGIYGQAGKLTLAEETLSEMLDAGVEPDEVAGGCMLEAYARWERYDTLL 162

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            F + M+  G +P   VY  +I    K +    A+ ++E++   +++PN   Y  +++  
Sbjct: 163 EFYEAMRQRGLVPSAHVYRTMIVTLYKAERHSDALMLWEDLLVEKLEPNFVLYAIIIHIL 222

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
              G+ +      +DM AAG   D+  Y  +I A   K+ R  ++    +++ +Q
Sbjct: 223 NKEGRTEDAVHTFKDMRAAGHLPDELLYNTIICA-LGKLGRYQESEALYLDMKKQ 276



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 106/274 (38%), Gaps = 10/274 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++      +       V+D M  +G          L+    K  R +D      + K
Sbjct: 582 YNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVHAYTKEGRFKDAAGLMKRAK 641

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   D   YN  +    K  N   A+ ++ EM++ +++P+ +TY  L++  +  G L 
Sbjct: 642 KVGVAMDTVAYNTSLKANLKSGNLKGALEVYGEMQEADIEPSAKTYTILISLFSKLGDLG 701

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                   + ++  G D+  Y+ +I  +     R  + A    E+  ++KG+   E   N
Sbjct: 702 RAVQAFEVLNSSEVGADEIAYSQMIHCY-GCAGRPKEAADLFQEM--ETKGFKPNEVIYN 758

Query: 224 NAENEM--MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
           N  +     G+  E    L       RR G     +T Y +   A          E+LL 
Sbjct: 759 NLLDAFARAGLFAEARLLLSDM----RRKGCPPSSVT-YLLLMSAYGSKGKPADAESLLH 813

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
           +++     PD     + IR Y + G + +  ++F
Sbjct: 814 LMQDRGLYPDCRHYNEVIRAYGNVGKLSDACRIF 847



 Score = 41.6 bits (96), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 53/132 (40%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++ +M   G +P   ++++L+    +     +       M+  G  P    Y  L+S  
Sbjct: 740 DLFQEMETKGFKPNEVIYNNLLDAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAY 799

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G       A  +   M+   + P+ + Y  ++ A    G+L     I  ++   G GL+ 
Sbjct: 800 GSKGKPADAESLLHLMQDRGLYPDCRHYNEVIRAYGNVGKLSDACRIFYELKTVGIGLEL 859

Query: 182 FCYAGLITAHTN 193
            C+  L+  H +
Sbjct: 860 GCFRTLVKIHLD 871



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 110/293 (37%), Gaps = 48/293 (16%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P + VYN +I +C  CK  ++AI +F+ M++     +  T   L++A    G+      +
Sbjct: 577 PSLYVYNTMIKLCAVCKELEEAIFVFDRMEENGRMFDAVTVSILVHAYTKEGRFKDAAGL 636

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENE 228
           ++     G  +D   Y   + A+                     KG  ++E  G   E +
Sbjct: 637 MKRAKKVGVAMDTVAYNTSLKANLKS---------------GNLKG--ALEVYGEMQEAD 679

Query: 229 MMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288
           +           P+A+               Y +     ++L D+       E+L     
Sbjct: 680 IE----------PSAK--------------TYTILISLFSKLGDLGRAVQAFEVLNSSEV 715

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE-LYATLVEGAMFGYTPKGMQ 347
             D     Q I CY  +G       +F++ + ++ F P E +Y  L++     +   G+ 
Sbjct: 716 GADEIAYSQMIHCYGCAGRPKEAADLFQE-METKGFKPNEVIYNNLLD----AFARAGL- 769

Query: 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            A+  L+  + R     P   + LLL++A    G    A  +  LMQ R + P
Sbjct: 770 FAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDRGLYP 822


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++    +  L R ++++M+  GV P      +L+    K    +D     ++M+
Sbjct: 342 YNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMR 401

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
           +NG+  D  +YN L+S+C      ++A ++FE+MKK E  +P+  +Y  +LN   + G +
Sbjct: 402 SNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNV 461

Query: 163 DPVYAIVRDMTAAGAGLD 180
           D    +  +M+  G  ++
Sbjct: 462 DRAMQLFDEMSELGVQIN 479



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/276 (19%), Positives = 116/276 (42%), Gaps = 9/276 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN  + SL   R+F L+ ++ ++M+  GV+     + ++I    + +       + ++M 
Sbjct: 202 YNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMY 261

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD   Y+ ++ V  K    ++ + ++E  +    KP+   +  L      AG  D
Sbjct: 262 KTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDYD 321

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            +  ++++M + G   +   Y  L+ A    + +A         L E+  G   +  +  
Sbjct: 322 GIRYVLQEMKSLGVQPNLVVYNTLLEA----MGKAGKPGLA-RSLFEEMVGSGVIPDAKT 376

Query: 224 -NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
             A  ++ G ++     L   E +   G  +  +L  Y+     CA+L   +  E L E 
Sbjct: 377 LTALVKIYGKARWARDALELWERMRSNGWPMDFIL--YNTLLSMCADLGLEEEAEKLFED 434

Query: 283 LKKDRKS-PDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           +KK     PD +     +  Y   G++D   ++F++
Sbjct: 435 MKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDE 470


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YN ++  L  + +   +  +  DM +DG  P R  +++++  +M G++    + 
Sbjct: 417 APNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTML--SMCGNKGMHKYV 474

Query: 98  FR--DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            R   +MK+ GF PD   +N LI+  G+C +   A +I++EM +    P+  TY  LLNA
Sbjct: 475 KRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNA 534

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            A  G      ++++DM   G    +  Y+ ++ ++
Sbjct: 535 LARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSY 570



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E    N   +A  YN +V +      +     + D M  +G++P    + ++I    + 
Sbjct: 339 KEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRA 398

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++       DQMK +G  P+V  YN ++ + GK   S++ ++I  +MK     PN  T+
Sbjct: 399 AQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITW 458

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +L+ C   G    V  + ++M + G   D+  +  LITA
Sbjct: 459 NTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITA 499



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   +NT+++   ++     ++ V+ +M   G +P RD F++LI  + +     D   
Sbjct: 452 APNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEK 511

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             D+M   GF P VA YN L++   +  +   A  + ++MK    KP+  +Y  +LN+ A
Sbjct: 512 IYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYA 571

Query: 158 AAGQLDPVYAIVRDM 172
             G +  +  I +D+
Sbjct: 572 KGGYVKGINRIEKDI 586



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 7/184 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y T++ +     +      +YD M   G  P    +++++    K S+ ++     
Sbjct: 384 NAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKIL 443

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK +G  P+   +N ++S+CG         R+F+EMK    +P+  T+  L+ A    
Sbjct: 444 CDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRC 503

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD--TATKIIELVEQSKGWSS 217
           G       I  +M  AG       Y  L+    N + R  D  TA  +I+ + ++KG+  
Sbjct: 504 GSDIDAEKIYDEMLEAGFTPSVATYNALL----NALARRGDWRTAESVIKDM-KNKGFKP 558

Query: 218 VETS 221
            ETS
Sbjct: 559 SETS 562



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K+ G+ P    YN L+ V GK     +A+ I +EM+     P+  TY  L+ A   AG 
Sbjct: 306 LKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGF 365

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +   A++  MT  G   +   Y  +I A+
Sbjct: 366 YEEGAALIDTMTENGIKPNAVTYTTMINAY 395



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +D+YD  +     P+  L  +LI+   K   L         ++ +G+ PD+ V+N ++S+
Sbjct: 584 KDIYDGHIF----PSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSM 639

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             +    D+A  I   +++  ++P+  TY  L++  A  G+      I+R++  +G   D
Sbjct: 640 FSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSD 699

Query: 181 KFCYAGLI 188
              Y  +I
Sbjct: 700 LISYNTVI 707



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 3/158 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL--IVGTMKGSRLQ 93
           +Y+ +   Y T++ S +   ++     +++ M   G+ PT   ++ +  + G M G    
Sbjct: 204 DYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKM-GRSWN 262

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 D+M++ G   D    + +IS CG+    D+A   F  +K     P   TY  LL
Sbjct: 263 KILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALL 322

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                AG      +I+++M       D   Y  L+ A+
Sbjct: 323 QVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAY 360



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/175 (18%), Positives = 71/175 (40%)

Query: 14  VGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           V G +GR +       +E   +    +    +TV+++   +      ++ +  +   G  
Sbjct: 253 VYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYA 312

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    +++L+    K     +      +M+ N   PD   YN L++   +    ++   +
Sbjct: 313 PGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAAL 372

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + M +  +KPN  TY  ++NA   A Q+D   ++   M  +G   +   Y  ++
Sbjct: 373 IDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAIL 427


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 148/372 (39%), Gaps = 28/372 (7%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   YN ++  LT + R      V+ +M+    QP    F  L+ G  + ++L+   
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +MK  G +PD A+YN LIS   K K+  QA +   EM K    P   TY  +++  
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             A +      ++ +M   G   + + Y  ++     +  R  D A K++E +     + 
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEE--RKLDEAKKMLEEMAVRGYFP 180

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL-----LTVYHVAFHACAELK 271
            V T  +             +  L   + V     FL+R+     +  Y    +   +  
Sbjct: 181 DVVTYNSF------------IKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSG 228

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
           D+ +   +L+ +     +PDV      I  +   G+++    + +  +     P    Y 
Sbjct: 229 DLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYN 288

Query: 332 TLVEGAM--FGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
           +L+ GA+   G+  K    A+D LV M  R    +P + S    +    K+     A  +
Sbjct: 289 SLL-GALHRLGHIGK----AEDMLVEMERRG--FTPDVVSYNACIDGLCKAERVKKAKAV 341

Query: 390 WDLMQARKITPS 401
           +D M  R  TP+
Sbjct: 342 FDRMVERGCTPN 353



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 10/199 (5%)

Query: 2   RLLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
           +LL  + R H         R    SA  +E   ++   +A  +  ++  L    +    R
Sbjct: 12  KLLLQLTREH---------RHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
            +   M   G  P   ++++LI G  K       F F  +M  N  LP V  Y  ++   
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K + +  A+++ +EM+     PN  TY  ++       +LD    ++ +M   G   D 
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 182

Query: 182 FCYAGLITAHTNKIPRADD 200
             Y   I     K  R D+
Sbjct: 183 VTYNSFIKGLC-KCDRVDE 200



 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 14/193 (7%)

Query: 11  HKSVGGALGRRFFVTSAG--AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM 68
           + S+ GAL R   +  A     E  RR +  +   YN  +  L    R    + V+D M+
Sbjct: 287 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 346

Query: 69  LDGVQPTRDLFHSLIV----------GTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYL 117
             G  P    +  LIV          G  KG R  +    F   +      PDV  YN +
Sbjct: 347 ERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVM 406

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           +    K +  D+A++I ++M +     N  T+  L++      +L     ++  M   G 
Sbjct: 407 LDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGF 465

Query: 178 GLDKFCYAGLITA 190
             D   Y  L+ A
Sbjct: 466 IPDFVTYGTLVDA 478



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 33/77 (42%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++ L+ G     RL D       M   GF+PD   Y  L+    KC  S  A+ +FEE  
Sbjct: 437 WNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAV 496

Query: 139 KYEVKPNGQTYVCLLNA 155
           K    P+  TY  L+  
Sbjct: 497 KGGCVPDVVTYSALITG 513



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 59/157 (37%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           AR     +   Y TV+  L           + D M   G  P    + SLI G  KG  +
Sbjct: 206 ARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEV 265

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           +      D M   G  P++  YN L+    +  +  +A  +  EM++    P+  +Y   
Sbjct: 266 ERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNAC 325

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           ++    A ++    A+   M   G   +   Y+ LI 
Sbjct: 326 IDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIV 362


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR  + N   +NTV+  L    +     DV DDM + G  P    +++LI G  K 
Sbjct: 219 KEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKM 278

Query: 90  SRLQDTF---FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            R+   +       +M  N   P+   +N LI    K +N   A+++FEEM+   +KP  
Sbjct: 279 GRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTV 338

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            TY  L+N     G+L+    ++ +M ++    +   Y  LI  +  K
Sbjct: 339 VTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKK 386



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 4/167 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +        YN++V  L ++ +    + + D+M+   ++P    +++LI G  K 
Sbjct: 327 EEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKK 386

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQ 147
             L++     D +   G  P+V  +N L+   G CK    ++A  + + M +    PN  
Sbjct: 387 KLLEEARELFDNIGKQGLTPNVITFNTLLH--GYCKFGKMEEAFLLQKVMLEKGFLPNAS 444

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           TY CL+      G+++ V  ++ +M   G   D   Y  LI+A   K
Sbjct: 445 TYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEK 491



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 38/236 (16%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E    N   N   YN ++     ++     R+++D++   G+ P    F++L+ G  K 
Sbjct: 362 DEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKF 421

Query: 90  SRLQDTFFFRDQMKANGFLP-----------------------------------DVAVY 114
            ++++ F  +  M   GFLP                                   D   Y
Sbjct: 422 GKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTY 481

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N LIS   + K   +A R+ +EM    +KP+  TY  LLN     G L     + + M  
Sbjct: 482 NILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEK 541

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM 230
            G   +   Y  LI  +  K  + +D    + E++E  KG     T+    + EMM
Sbjct: 542 EGRWANVVTYNVLIQGYCRK-GKLEDANGLLNEMLE--KGLIPNRTTYEIIKEEMM 594



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 18  LGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           +GR  + +   A  +E      + N+  +N ++              V+++M   G++PT
Sbjct: 278 MGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPT 337

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRI 133
              ++SL+ G     +L +     D+M ++   P+V  YN LI+  G CK    ++A  +
Sbjct: 338 VVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALIN--GYCKKKLLEEAREL 395

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           F+ + K  + PN  T+  LL+     G+++  + + + M   G
Sbjct: 396 FDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKG 438


>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Vitis vinifera]
          Length = 1071

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 129/346 (37%), Gaps = 65/346 (18%)

Query: 29   AEEYARRNYAN----NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
            AE   RR++ +    +   YNT + ++    R      +YD M+  GV P+   ++++I 
Sbjct: 763  AENVIRRSFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMIS 822

Query: 85   GTMKGSRLQDT--FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
               +G +L      F + +    G   D   Y  LIS  GK   S +A  +F EM++  +
Sbjct: 823  VYGRGRKLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGI 882

Query: 143  KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
            KP   +Y  ++N  A AG       + + M   G   D   Y  LI A+T          
Sbjct: 883  KPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSF------- 935

Query: 203  TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR------RGGFLSRL 256
             K +E                 AE  +M +  E +  LP+  + ++      + GF    
Sbjct: 936  -KFLE-----------------AEETIMSMQNEGV--LPSCVHFNQLLSAFAKAGFTEEA 975

Query: 257  LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
              VYH    A                      SPDV      +R YL  G ++ G   FE
Sbjct: 976  ERVYHTLLSAGL--------------------SPDVACYRTMLRGYLDYGCVEKGITFFE 1015

Query: 317  DYICSEKFPPAELYATLVEGAMFGYTPKGMQL-AQDTLVNMNSRNI 361
                 E   P      ++  A+  Y   G +L A+  L +M S  I
Sbjct: 1016 Q--IRESVEPDRF---IMSSAVHFYKLAGKELEAEGILDSMKSLGI 1056



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 141/336 (41%), Gaps = 12/336 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N +++SL  +     + D++ +M+  GV P    +  +I   +K   ++++F    +MK
Sbjct: 265 FNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYEMK 324

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF+P+   Y+ LIS+  K  N D+AI+++E+M+   + P+  T   LL      G   
Sbjct: 325 NLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYS 384

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
              ++  +M       D+  Y GL+     K+   +D A K  +  EQ    ++ +T   
Sbjct: 385 RAVSLFSEMEKNKIVADEVIY-GLLIRIYGKLGLYED-AEKTFKETEQLGLLTNEKTYIA 442

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
            A+  +   + E+   L   E +  R  + SR    Y V        +D+ + E   + L
Sbjct: 443 MAQVHLNSGNFEK--ALTIMELMRSRNIWFSRF--SYIVLLQCYVMKEDLASAEATFQAL 498

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
            K    PD       +  Y+    ++      +D+I   +  P E    L +  M  Y  
Sbjct: 499 SKT-GLPDAGSCNDMLNLYIKLDLLEKA----KDFIFQIRKDPVEFDMELCKTVMKVYCK 553

Query: 344 KGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGE 378
           KGM + A+  +  M +  +F        L LV   E
Sbjct: 554 KGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLVMHEE 589



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 2/149 (1%)

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           L    + +M+  G +P      +++    +  R +    F   ++  G +P +AV+N+++
Sbjct: 210 LAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVFNFML 269

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
           S   K     + I ++ EM    V PN  TY  ++++    G ++  +    +M   G  
Sbjct: 270 SSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYEMKNLGFV 329

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIE 207
            ++  Y+ LI+  +    R  D A K+ E
Sbjct: 330 PEEVTYSLLISLSSKTGNR--DEAIKLYE 356


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 5/183 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R  +  N   + +++     + +    + V   M   G +P    + +L+ G     
Sbjct: 243 EDMRLRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAG 302

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++ D +     M+  GF P+   Y  LI    K    ++A+++F EM++YE + +  TY 
Sbjct: 303 KMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYT 362

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++     G++D  Y ++ DM   G    +  Y  ++ AH  K     +   + +EL+E
Sbjct: 363 ALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKK-----EKLIECLELME 417

Query: 211 QSK 213
           + K
Sbjct: 418 KMK 420



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 171/419 (40%), Gaps = 53/419 (12%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            G LG RFFV +A      +  Y ++   Y ++V  L+  R+F  +  + ++M  +  Q 
Sbjct: 127 AGNLGYRFFVWAA-----KQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 181

Query: 75  TR-DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
              +LF  L+        ++      D+M   G  PD  V+  L+    K  +   A ++
Sbjct: 182 IEPELFVVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKL 241

Query: 134 FEEMK--------------------------KYEV--------KPNGQTYVCLLNACAAA 159
           FE+M+                          KY +        +P+   Y  LL+  A A
Sbjct: 242 FEDMRLRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANA 301

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G++   Y +++DM   G   +  CY  LI A   K+ R ++     +E+ E+ +  + V 
Sbjct: 302 GKMADAYDLLKDMRRRGFEPNATCYTVLIQA-LCKVDRMEEAMKVFVEM-ERYECEADVV 359

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV-AFHACAELKDVQAMET 278
           T              ++ Y L   + + +  G +   LT  H+ A H   E K ++ +E 
Sbjct: 360 TYTALVSGFCKWGKIDKCY-LVLDDMIKK--GLMPSQLTYMHIMAAHEKKE-KLIECLE- 414

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
           L+E +K+    PD+ I    IR     G++    +++ +   +   P A+ +  ++    
Sbjct: 415 LMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIIN--- 471

Query: 339 FGYTPKGMQL-AQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
            G T +G  L A D    M +R +F  P+ G+  LL+    K      A  +W  + ++
Sbjct: 472 -GLTSQGCLLEACDHFKEMVARGLFSVPQYGTLKLLLNTLLKDKKLEMAKDVWSCITSK 529


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 145/381 (38%), Gaps = 19/381 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   Y  ++ +L + +RF     V+  ++  G+ P      +L+VG   G R+   +   
Sbjct: 153 DVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELV 212

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             +   G   +  VYN LI    +    D+A++I   M +    P+  TY  LLN C   
Sbjct: 213 VGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEE 272

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVE--QSKGW 215
           G +D    +V  M  +G   D + Y  L+      N + RA       + +VE  Q+KG 
Sbjct: 273 GMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAH------LMMVERMQTKGM 326

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
             V +               + Y L    +    G  +   +  +++   A         
Sbjct: 327 CDVVSYNTVITAFCKARRTRKGYEL----FEEMCGKGIRPDMVTFNILIDAFLREGSTHV 382

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           ++ LL+ + K R  PD       +     +G +D  H VF D + +   P    Y  L+ 
Sbjct: 383 VKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLN 442

Query: 336 GAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
           G  F  T + M  A      M S+ ++  P   +  L+V    +    + A  +WD M  
Sbjct: 443 G--FCKTSRVMD-AMHLFDEMQSKGLY--PDEVTYKLIVGGLIRGKKISLACRVWDQMME 497

Query: 396 RKITPSLPAVEAYYNGLKDRE 416
           R  T +    E   N ++  +
Sbjct: 498 RGFTLNRHLSETLVNAIQSSD 518



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 69/360 (19%), Positives = 136/360 (37%), Gaps = 48/360 (13%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S + + + S  +     L+  +  DM   G  P    F++ +    + +RL+        
Sbjct: 85  SRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHS 144

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M + G  PDV  Y  +I      K  D+A +++  +    + P+ +  V L+    + G+
Sbjct: 145 MPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGR 204

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           +D  Y +V  +   G  ++   Y  LI     ++ R  D A KI       K + S    
Sbjct: 205 VDLAYELVVGVIKGGVKVNSLVYNALIDGFC-RMGRV-DKAMKI-------KAFMS---- 251

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                                      R G +  L+T Y++  + C E   V     L+E
Sbjct: 252 ---------------------------RTGCVPDLVT-YNILLNYCCEEGMVDEAVRLVE 283

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG- 340
            +++    PD+Y   + ++ +  +  +D  H +  + + ++       Y T++       
Sbjct: 284 TMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKAR 343

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            T KG +L ++    M  + I   P M +  +L+ A  + G       + D M   ++ P
Sbjct: 344 RTRKGYELFEE----MCGKGI--RPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLP 397


>gi|110288709|gb|ABG65945.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|110288711|gb|ABG65946.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 614

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 2/115 (1%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K  G  PD  +Y  LIS C KC   D    +F EM    ++PN  TY  L++ CA AGQ
Sbjct: 133 LKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQ 192

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
           +   +     M++     D+  +  LI+A   +  + RA D  +++     +SKG
Sbjct: 193 VAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKG 247



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 48/80 (60%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P ++ +N L+SVC   ++ D A+++   +K+  +KP+ + Y  L++ CA  G++D ++ +
Sbjct: 105 PKMSTFNMLLSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEV 164

Query: 169 VRDMTAAGAGLDKFCYAGLI 188
             +M +AG   +   Y+ LI
Sbjct: 165 FHEMVSAGIEPNVNTYSALI 184



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L S+  + +   GAL     +  AG +   +         Y T++++     +   + +
Sbjct: 112 MLLSVCANSQDFDGALQVMVLLKEAGLKPDCKL--------YTTLISTCAKCGKVDAMFE 163

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G++P  + + +LI G  K  ++   F     M +    PD  V+N LIS CG
Sbjct: 164 VFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG 223

Query: 123 KCKNSDQAIRIFEEMK--------KYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRD 171
           +     +A  +  EM            + P+  T   L+  C  AGQ D    VY ++++
Sbjct: 224 ESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQE 283

Query: 172 MTAAG 176
               G
Sbjct: 284 YNIKG 288



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 19/198 (9%)

Query: 5   QSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVT-----------SLTS 53
           + I   H +VG  +        AG  + AR  Y     EYN   T           SLT 
Sbjct: 249 KPILPDHVTVGALMKT---CIQAGQADRAREVY-KMLQEYNIKGTPEVYTIALRSCSLTG 304

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFLPDVA 112
              F L   +Y+DM   GVQP  ++F S +V     +R  D  F      +A G+     
Sbjct: 305 DLGFAL--KIYEDMNKIGVQPD-EMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTI 361

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+ L+  C   K+  +A+++FEE+K  ++ P       L+ A     Q+   + ++ +M
Sbjct: 362 AYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEM 421

Query: 173 TAAGAGLDKFCYAGLITA 190
              G   +   Y+ L  A
Sbjct: 422 KRLGVCPNMITYSVLFVA 439



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/122 (18%), Positives = 54/122 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + Y      Y++++ +  + + +     +++++    + PT  + ++LI     G ++  
Sbjct: 354 KGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLK 413

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           +F    +MK  G  P++  Y+ L   C +   +   + +FE++K   +  N     CL  
Sbjct: 414 SFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTG 473

Query: 155 AC 156
            C
Sbjct: 474 LC 475



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   +  C    +   A++I+E+M K  V+P+      L++    A + D  + I++D 
Sbjct: 292 VYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDA 351

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMG 231
            A G  +    Y+ L+ A  N    A D   K ++L E+ K    + T S  NA    + 
Sbjct: 352 RAKGYQVGTIAYSSLMGACCN----AKDW-KKALQLFEEIKSIKLMPTVSMMNALITALC 406

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
              + L +      + +R G    ++T Y V F AC    + Q    L E LK D
Sbjct: 407 DGDQVLKSFEVLSEM-KRLGVCPNMIT-YSVLFVACERNAEAQLGLDLFEQLKID 459


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 3/188 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E++ +     A  YNT++ +   QR F  +  V   M  DGV   +  +  L+  ++K 
Sbjct: 248 KEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKN 307

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ D     D+M+  G   DV VY  LIS   +  N  +A  +F+E+ +  + P+  TY
Sbjct: 308 GKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTY 367

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++     G++     ++ +M + G  + +  +  LI  +  K     D A+ I +++
Sbjct: 368 GALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRK--GMVDEASMIYDVM 425

Query: 210 EQSKGWSS 217
           EQ KG+ +
Sbjct: 426 EQ-KGFQA 432



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + ++ +M   GVQP    ++ +I    K  ++++    R  M+ANG  PD   Y  LI  
Sbjct: 489 KRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIH- 547

Query: 121 CGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G+C   N D+A+R+F EM    +  N  TY  +++  + AG+ D  + +  +M   G  
Sbjct: 548 -GECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYT 606

Query: 179 LDKFCYAGLI 188
           +D   Y  LI
Sbjct: 607 IDNKVYTALI 616



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 6/137 (4%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
            +R FV      E + +    NA  YN ++ +   Q +    R +  +M  +G+ P    
Sbjct: 488 AKRLFV------EMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYT 541

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI G      + +      +M   G   +   Y  +IS   K   SD+A  +++EMK
Sbjct: 542 YTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMK 601

Query: 139 KYEVKPNGQTYVCLLNA 155
           +     + + Y  L+ +
Sbjct: 602 RKGYTIDNKVYTALIGS 618


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 3/187 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQ 93
           R     A  YN+++  L  +  +  + ++Y++M  +G   P    + +LI    K  R  
Sbjct: 184 RKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQD 243

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
              +  ++MK NG  P   +Y  L+++  K  N   A+ +FEEM+    +P+  TY  L+
Sbjct: 244 SAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELI 303

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                AG+LD  Y    +M   G   D      +I     K  R DD A K+ E +E  +
Sbjct: 304 RGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMIN-FLGKAGRLDD-AIKLFEEMETLR 361

Query: 214 GWSSVET 220
              SV T
Sbjct: 362 CIPSVVT 368



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 2/180 (1%)

Query: 13  SVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           S+  ALG+  R+ + +   +E      +++A  Y  ++  L    R     D++D+M   
Sbjct: 442 SLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRL 501

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P    +++L+ G  +   L +      +M+ +G +PD+  YN +++   K    D+A
Sbjct: 502 GCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRA 561

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +   MK+  +KP+  +Y  +L A + AG  +    ++++M A G   D   Y+ ++ A
Sbjct: 562 MGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEA 621



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K +R +      ++M
Sbjct: 369 YNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI   GK K  D A  +F+E+K+     + + Y  ++     AG+L
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           D    +  +M   G   + + Y  L++ 
Sbjct: 489 DDAVDLFDEMNRLGCTPNVYAYNALMSG 516



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M     +P    +  LI G  K  RL + + F  +M+  G  PD  + N +I+  G
Sbjct: 283 LFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLG 342

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIVRDMTAAGAGLDK 181
           K    D AI++FEEM+     P+  TY  ++ A   +  ++  + +    M  +G     
Sbjct: 343 KAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSP 402

Query: 182 FCYAGLIT--AHTNKIPRA 198
           F Y+ LI     TN+  +A
Sbjct: 403 FTYSILIDGFCKTNRTEKA 421



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 71/161 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +    + Y +++ +L   +R+ L  +++ ++  +    +  ++  +I    K 
Sbjct: 426 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKA 485

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D     D+M   G  P+V  YN L+S   +    D+A+     M+ +   P+  +Y
Sbjct: 486 GRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSY 545

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +LNA A  G  D    ++ +M  +    D   Y  ++ A
Sbjct: 546 NIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGA 586



 Score = 44.7 bits (104), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 4/192 (2%)

Query: 28  GAEEYARRNYAN-NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           G  E  R  Y   +   Y  ++  L    R     + + +M  +G +P   L +++I   
Sbjct: 282 GLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFL 341

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI-RIFEEMKKYEVKPN 145
            K  RL D     ++M+    +P V  YN +I    + K+    I   FE MK   + P+
Sbjct: 342 GKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPS 401

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  L++      + +    ++ +M   G       Y  LI A   K  R  D A ++
Sbjct: 402 PFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDA-LGKAKRY-DLANEL 459

Query: 206 IELVEQSKGWSS 217
            + ++++ G SS
Sbjct: 460 FQELKENCGSSS 471


>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
 gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
          Length = 647

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 1/167 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++   RR +  +  Y D++  G+ P+   + +L+    +    +DT     +MK
Sbjct: 266 YNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMK 325

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 +V +YN ++++C      D+AI IFE+MK   + P+  T+  ++   +  G++ 
Sbjct: 326 EKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVS 385

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               ++ +M  AG   + F    LI  +  K  R DD       L E
Sbjct: 386 EAENMLNEMFEAGFQPNIFVLTSLIQCY-GKAQRIDDVVKTFNRLYE 431



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 4/171 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-LQDTFFF 98
           + + ++T++        F    +VY++M   GV+P   ++++L+    +  R  Q   F+
Sbjct: 227 DTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFY 286

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           +D + + G  P  A Y  L+   G+ +  +  I+I++EMK+ E+  N   Y  +L  CA 
Sbjct: 287 QDIIDS-GLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCAD 345

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE 207
            G +D    I  DM  +G   D + ++ +IT  +   K+  A++   ++ E
Sbjct: 346 LGFVDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFE 396



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 45/93 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++DM   G+ P    F S+I  +    ++ +     ++M   GF P++ V   LI   
Sbjct: 354 EIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCY 413

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           GK +  D  ++ F  + +  + P+ +   CLLN
Sbjct: 414 GKAQRIDDVVKTFNRLYELLITPDDRFCGCLLN 446



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 113/277 (40%), Gaps = 14/277 (5%)

Query: 45  NTVVTSLTSQRRFFLLRD----VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           N   +++ S  R   L D     ++ M   G+ P    F ++I    +   ++      D
Sbjct: 158 NVTFSTIISCARLCNLADKAVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYD 217

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           + +   +  D   ++ LI +     N D  + ++EEMK   VKPN   Y  LL+A   A 
Sbjct: 218 RARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRAR 277

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           +        +D+  +G       YA L+ A+  +    +DT     E+ E+    + +  
Sbjct: 278 RPWQAKKFYQDIIDSGLSPSYATYAALLRAY-GRARYGEDTIKIYKEMKEKELSLNVLLY 336

Query: 221 SGNNAENEMMGVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
           +   A    +G   E  E++       +       S ++T+       C ++ + + M  
Sbjct: 337 NTILAMCADLGFVDEAIEIFEDMKNSGISPDSWTFSSMITMS----SCCGKVSEAENM-- 390

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
           L EM +   + P+++++   I+CY  +  ID+  K F
Sbjct: 391 LNEMFEAGFQ-PNIFVLTSLIQCYGKAQRIDDVVKTF 426



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FFR++++ N    +V VYN  + V  KC++ ++  ++F+EM +  VKP+  T+  +++  
Sbjct: 112 FFRERLEFN---REVVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCA 168

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                 D        M + G   D   ++ +I ++
Sbjct: 169 RLCNLADKAVEWFEKMPSFGLDPDDVTFSTMIDSY 203



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/147 (19%), Positives = 63/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN  +  L   R    +  ++D+M+   V+P    F ++I      +       + ++M 
Sbjct: 126 YNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLADKAVEWFEKMP 185

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PD   ++ +I   G+  N ++A+ +++  +  + + +  T+  L+     +G  D
Sbjct: 186 SFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFD 245

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +  +M A G   +   Y  L+ A
Sbjct: 246 CCLNVYEEMKALGVKPNLVIYNTLLDA 272


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 2/168 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++   +R +  +++Y +M  +G+QP+   + +L+    +    +D      +MK
Sbjct: 319 YNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMK 378

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQL 162
             G    V +YN L+++C     +++A  IFE+MK      P+  T+  L+   + +G++
Sbjct: 379 EKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKV 438

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               A++  M  AG   + F    LI  +  K  R D+       L+E
Sbjct: 439 SEAEAMLNAMLEAGFEPNIFVLTSLIQCY-GKANRTDEVVRTFDRLLE 485



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY++M   GV+P   ++++L+    +  R         +M  NG  P    Y  L+   
Sbjct: 302 NVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAY 361

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-D 180
           G+ + ++ A+ +++EMK+  ++ +   Y  LL  CA  G  +   AI  DM ++G  + D
Sbjct: 362 GRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPD 421

Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIE 207
            + ++ LIT +  + K+  A+     ++E
Sbjct: 422 SWTFSSLITIYSCSGKVSEAEAMLNAMLE 450



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 117/311 (37%), Gaps = 46/311 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN  +      R       ++D+M+  GV+P    F ++I      S       + ++M 
Sbjct: 179 YNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMP 238

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIR------------------------------- 132
             G  PD   Y+ +I   G+  N D A++                               
Sbjct: 239 EFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFD 298

Query: 133 ----IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++EEMK   VKPN   Y  LL+A   A +      I ++MT  G       YA L+
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALL 358

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE---LYNLPTAEY 245
            A+  +   A+D      E+ E+    S V  +   A    +G ++E      ++ ++  
Sbjct: 359 RAY-GRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGN 417

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
                   S L+T+Y     +C+    V   E +L  + +    P+++++   I+CY  +
Sbjct: 418 CMPDSWTFSSLITIY-----SCS--GKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKA 470

Query: 306 GDIDNGHKVFE 316
              D   + F+
Sbjct: 471 NRTDEVVRTFD 481



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FFR ++K +    +V +YN  + V  KC+N D+A ++F+EM +  VKP+  T+  +++  
Sbjct: 165 FFRKRLKPSR---EVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCA 221

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +   +        M   G   D   Y+ +I A+
Sbjct: 222 RVSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAY 256



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 63  VYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++DM   G   P    F SLI       ++ +     + M   GF P++ V   LI   
Sbjct: 408 IFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCY 467

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           GK   +D+ +R F+ + + ++ P+ +   C+LN
Sbjct: 468 GKANRTDEVVRTFDRLLELDITPDDRFCGCMLN 500


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 123/280 (43%), Gaps = 18/280 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +    L + V+D +   G++P+   F++L+ G +K   L + F  ++ M+
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMR 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  D+A  +F EM    + PNG T+  L++     G+
Sbjct: 199 ASGVQPDVYTYSVLIN--GLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           LD    I R M   G   D   Y  LI     K     D       L E S+    ++  
Sbjct: 257 LDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKK----GDLKQARYLLDEMSR--KGLKPD 310

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS-RLLTVYHVA--FHACAELKDVQAMET 278
                  + G  KE   +L TA  +  R    S RL  V + A  F  C E + V A + 
Sbjct: 311 KITYTTLIDGSCKEG--DLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKM 368

Query: 279 LLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFED 317
           L EML+   K  D  Y ++ N  C    GD+    ++  +
Sbjct: 369 LREMLRVGLKPDDETYTMIMNEFC--KKGDVKKASELLRE 406



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + ++ +   YNT++  L  +      R + D+M   G++P +  + +LI G+ K   L+ 
Sbjct: 270 QGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLET 329

Query: 95  TFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            F  R++M       D  VY  LI  +C + +  D A ++  EM +  +KP+ +TY  ++
Sbjct: 330 AFELRERMIKESIRLDDVVYTALIFGLCQEGRAVD-AEKMLREMLRVGLKPDDETYTMIM 388

Query: 154 NACAAAGQLDPVYAIVRDMTAAG 176
           N     G +     ++R+M   G
Sbjct: 389 NEFCKKGDVKKASELLREMQRNG 411



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   + T++       R  L  D+Y  M+  G  P    +++LI G  K   L+   +  
Sbjct: 240 NGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLL 299

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  PD   Y  LI   G CK  D   A  + E M K  ++ +   Y  L+    
Sbjct: 300 DEMSRKGLKPDKITYTTLID--GSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLC 357

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G+      ++R+M   G   D   Y  ++     K
Sbjct: 358 QEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKK 394


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +   LPD+  YN LI    K  +  QA  + +EM    +KP+  TY  L++ C   G LD
Sbjct: 275 SQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLD 334

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +   + M      LD   Y  LI+ 
Sbjct: 335 TAFEHRKRMIQENIRLDDVAYTALISG 361



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 134/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 191 GDLNEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLVKGLIPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--RLLTVYHVA 263
                  KG   ++         + G  KE   +L TA + HR+       RL  V + A
Sbjct: 309 -----SMKG---LKPDKFTYXTLIDGCCKEG--DLDTA-FEHRKRMIQENIRLDDVAYTA 357

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
             +  C E + V A + L EML    K  D  Y ++ N  C    GD+  G K+ ++   
Sbjct: 358 LISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFC--KKGDVWKGSKLLKEMQR 415

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 416 DGHVPSVVTYNVLMNG 431


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 129/295 (43%), Gaps = 20/295 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  ++ M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PN  
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLIN--GLCKESKLDDANELFDEMLDNGLVPNSV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKI 205
           ++  L++     G++D    I + M +     D   Y  LI        + +A D   ++
Sbjct: 243 SFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L TA EY  R      RL  V + A 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GSCKEG--DLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLMKE 406



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM- 102
           YNT++  L         +D+ ++M + G++P +  + +LI G+ K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMI 338

Query: 103 KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           K N  L DVA Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G 
Sbjct: 339 KENIRLDDVA-YTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 397 VWTGSKLMKEMQRDG 411


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 108/272 (39%), Gaps = 6/272 (2%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M+L G  PT   ++S I G  K  R+ D       M AN  LPDV  YN LI    + 
Sbjct: 328 EEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRL 387

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            N  +A  +F+E++   + P   TY  LL+     G+L+    +  +M   G   D   Y
Sbjct: 388 GNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244
             L+   + K+           E++ +     S   +        +G +        + +
Sbjct: 448 TILVNG-SCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF----SLQ 502

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                 GF   L+ +Y+V      +L +++    LL+ +  D   PD       I  +L 
Sbjct: 503 EEMLAKGFPPDLI-IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +G +  G ++F + +     P    Y  L+ G
Sbjct: 562 NGRLRKGREIFYEMLSKGLTPSVVTYTVLIHG 593



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++ +     R    R+++ +M+  G+ P+   +  LI G     RL+  F +  +M+
Sbjct: 552 YTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQ 611

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LP+V  YN LI+   K +  DQA   F EM +  + PN  +Y  L+N     G   
Sbjct: 612 EKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQ 671

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
              ++ + M   G   D   ++ L+
Sbjct: 672 EALSLYKQMLDRGVQPDSCTHSALL 696



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E      A +   Y  +V          + ++ +D+M+ +G++     + + IVG +K  
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLG 493

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
                F  +++M A GF PD+ +YN ++    K  N ++A  + ++M    V P+  TY 
Sbjct: 494 DTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYT 553

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +++A    G+L     I  +M + G       Y  LI  H  K
Sbjct: 554 SIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGK 597



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 67/164 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +  +   YN VV  L          ++   M+ DGV P    + S+I   ++ 
Sbjct: 503 EEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLEN 562

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL+       +M + G  P V  Y  LI         ++A   F EM++  + PN  TY
Sbjct: 563 GRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITY 622

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             L+N      ++D  Y    +M   G   +K+ Y  LI  + N
Sbjct: 623 NSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCN 666



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY  M   G++PT   +++L+    KG ++Q       +M+  G  P+   YN LI+  
Sbjct: 220 EVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGL 279

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    +QA  +  EM K  +K +  TY  L+      G L    ++  +M   GA    
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTV 339

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELV 209
             Y   I     K+ R  D   ++ +++
Sbjct: 340 ATYNSFIYGLC-KLGRMSDAMQQLSDML 366


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 61/121 (50%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN V+  L    +      V+D+M+  GV P +  ++++I G +KG  L+  F  R
Sbjct: 194 DAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLR 253

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P+V  YN L+S   +    D+   + +EM  Y + P+G TY  L +     
Sbjct: 254 DQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRT 313

Query: 160 G 160
           G
Sbjct: 314 G 314



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 111/258 (43%), Gaps = 28/258 (10%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ PT  ++++LI G  +   LQ  F   +QMK+    PD   YN LI+   K +   +A
Sbjct: 365 GLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEA 424

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +  EM+K  V P+ +T+  L++A   AGQL+  + ++ DM   G   +   +  ++ A
Sbjct: 425 EDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKA 484

Query: 191 --HTNKIPRA----DDTATKIIELVEQSKGWSS-----VETSGNNAENEMMGVSKEELYN 239
                KIP A    DD   K  ++V  ++ ++S     +E+ G   E   + V K     
Sbjct: 485 FCKNGKIPEAVAILDDMIHK--DVVPNAQVYNSIIDAYIESGGT--EQAFLLVEK----- 535

Query: 240 LPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
                   +  G  + + T Y++      +   +   E L+  L      PDV      I
Sbjct: 536 -------MKSSGVSASIFT-YNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTII 587

Query: 300 RCYLHSGDIDNGHKVFED 317
               + GD D   ++ ++
Sbjct: 588 SACCNKGDTDRALELLQE 605



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 30  EEYARRNYANNASEYNTVV----TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           ++   ++   NA  YN+++     S  +++ F L+    + M   GV  +   ++ L+ G
Sbjct: 499 DDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLV----EKMKSSGVSASIFTYNLLLKG 554

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
             K S++ +       +   G  PDV  YN +IS C    ++D+A+ + +EM KY+++P 
Sbjct: 555 LCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPT 614

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            +TY  LL+A  +AG++  +  + + M 
Sbjct: 615 LRTYHPLLSALGSAGRVHDMECLYQHMV 642



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 1/182 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R+   +   YN ++  L          D+  +M   GV P+ + F++LI    + 
Sbjct: 394 EQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRA 453

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+  F     M+  G   +V  +  ++    K     +A+ I ++M   +V PN Q Y
Sbjct: 454 GQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVY 513

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++A   +G  +  + +V  M ++G     F Y  L+     K  + D+    I  L 
Sbjct: 514 NSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTY-NLLLKGLCKNSQIDEAEELIYNLT 572

Query: 210 EQ 211
            Q
Sbjct: 573 NQ 574



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/297 (19%), Positives = 121/297 (40%), Gaps = 16/297 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++      R       +++ M    ++P    +++LI G  K   + +      +M+
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME 432

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P V  +N LI   G+    ++   +  +M+   +K N  ++  ++ A    G++ 
Sbjct: 433 KSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIP 492

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG- 222
              AI+ DM       +   Y  +I A+        + A  ++E ++ S   +S+ T   
Sbjct: 493 EAVAILDDMIHKDVVPNAQVYNSIIDAYIES--GGTEQAFLLVEKMKSSGVSASIFTYNL 550

Query: 223 ---NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMET 278
                 +N  +  ++E +YNL          G    +++ Y+    AC    D  +A+E 
Sbjct: 551 LLKGLCKNSQIDEAEELIYNLTNQ-------GLRPDVVS-YNTIISACCNKGDTDRALEL 602

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           L EM K D + P +      +     +G + +   +++  +     P + +Y T  E
Sbjct: 603 LQEMHKYDIR-PTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCE 658



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 16/262 (6%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++ +I G  +  +  D     D+M   G  P+   YN +I    K  + +   R+ ++M 
Sbjct: 198 YNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQML 257

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
           +   KPN  TY  LL+    AG++D   A++ +MT+     D F Y+ L    T    R 
Sbjct: 258 QDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLT----RT 313

Query: 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSR 255
            D+ T +    E  K    V          + G+ K+    +  AE V       G +  
Sbjct: 314 GDSRTMLSLFGESLK--KGVIIGAYTCSILLNGLCKDG--KVAKAEQVLEMLVHTGLVPT 369

Query: 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHK 313
              +Y+   +   +++D+Q   ++ E +K     PD   Y  + N  C +    I     
Sbjct: 370 -TAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEM--ITEAED 426

Query: 314 VFEDYICSEKFPPAELYATLVE 335
           +  +   S   P  E + TL++
Sbjct: 427 LVMEMEKSGVDPSVETFNTLID 448



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E   R  A N   YNT++            F LRD    M+ DG +P    ++ L+ G 
Sbjct: 219 DEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRD---QMLQDGRKPNVVTYNVLLSGL 275

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            +  R+ +T    D+M +   LPD   Y+ L     +  +S   + +F E  K  V    
Sbjct: 276 CRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGA 335

Query: 147 QTYVCLLNACAAAGQL 162
            T   LLN     G++
Sbjct: 336 YTCSILLNGLCKDGKV 351



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 49/110 (44%)

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           L+ G  K  ++       + +   G +P  A+YN LI+   + ++   A  IFE+MK   
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH 400

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           ++P+  TY  L+N       +     +V +M  +G       +  LI A+
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAY 450



 Score = 38.1 bits (87), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 118/318 (37%), Gaps = 22/318 (6%)

Query: 28  GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
           GA   + R+   + S  N ++ SL S  R   +R  +  ++  G +P    ++  +   +
Sbjct: 110 GACAGSVRSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACV 169

Query: 88  KGSRLQDTF-FFRDQMKANGFLP-DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
               L +     R   ++ G  P D   YN +I+   +      A+++F+EM    V PN
Sbjct: 170 AAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPN 229

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  +++     G L+  + +   M   G   +   Y  L++    +  R D+T   +
Sbjct: 230 QITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLC-RAGRMDETRALM 288

Query: 206 IELVEQS---KGWS-SVETSG---NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
            E+   S    G++ S+   G         M+ +  E L           + G +    T
Sbjct: 289 DEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESL-----------KKGVIIGAYT 337

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
              +    C + K  +A E +LEML      P   I    I  Y    D+     +FE  
Sbjct: 338 CSILLNGLCKDGKVAKA-EQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQM 396

Query: 319 ICSEKFPPAELYATLVEG 336
                 P    Y  L+ G
Sbjct: 397 KSRHIRPDHITYNALING 414


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 18/272 (6%)

Query: 72  VQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           V P R+   + +LI G  +  +L +   F  +M+ +G  P V  Y  L  VC  C++  +
Sbjct: 249 VMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVL--VCALCESGRE 306

Query: 130 --AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
             A+ +F EM++   +PN  TY  L++     G++D    ++ +M   G       +  L
Sbjct: 307 LEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNAL 366

Query: 188 ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM-GVSKEELYNLPTAEYV 246
           I ++  +    D  A  ++ L+E  K   +V T      NE++ G  + +  +   A   
Sbjct: 367 IGSYCKRGMMED--AVGVLGLMESKKVCPNVRTY-----NELICGFCRGKSMDRAMALLN 419

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
                 LS  +  Y+   H   E+  V +   L  ++ +D  SPD +     + C    G
Sbjct: 420 KMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMG 479

Query: 307 DIDNGHKVFEDYICSEKFPPA--ELYATLVEG 336
            +   H++ E     EK   A    Y  L++G
Sbjct: 480 RVGEAHQILESL--KEKHVKANEHAYTALIDG 509



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   Y  ++  L  + R      + ++M+  GV P+   F++LI    K  
Sbjct: 315 EMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRG 374

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQT 148
            ++D       M++    P+V  YN LI  CG C  K+ D+A+ +  +M + ++ P+  T
Sbjct: 375 MMEDAVGVLGLMESKKVCPNVRTYNELI--CGFCRGKSMDRAMALLNKMVESKLSPDVVT 432

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  L++     G +D    + R M   G   D++ +   +  
Sbjct: 433 YNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVC 474



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 55/130 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
            ++  M+ +   P    F+ +I G  K  ++QD     + M      P +  YN L+   
Sbjct: 521 SLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEV 580

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K  + D+A  I   +     +PN  TY   + A  + G+L+    +V  +   G  LD 
Sbjct: 581 LKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDS 640

Query: 182 FCYAGLITAH 191
           F Y  LI A+
Sbjct: 641 FIYNLLINAY 650



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 70/174 (40%), Gaps = 2/174 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  ++ +   +N  +  L    R      + + +    V+     + +LI G  K  +++
Sbjct: 458 RDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIE 517

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +M A   LP+   +N +I    K      A+ + E+M K++VKP   TY  L+
Sbjct: 518 HAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILV 577

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKI 205
                    D    I+  + ++G   +   Y   I A+ +  ++  A++   KI
Sbjct: 578 EEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKI 631



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 6/166 (3%)

Query: 49  TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108
           T + S+  F +   +++ M   G  P  + +  LI G  K  RL   F     M+  G  
Sbjct: 712 TDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGIS 771

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P   ++N L+S C K     +A+ + + M +     + ++Y  L+         +   A+
Sbjct: 772 PSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAV 831

Query: 169 VRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQS 212
              +   G   D+  +  LI   A T  +    D  ++++ L+E++
Sbjct: 832 FCSLLRCGYNYDEVAWKVLIDGLAKTGYV----DQCSELLNLMEKN 873



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 57/145 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V +L    R      ++ +M   G +P    +  LI    K  R+ +     ++M 
Sbjct: 293 YTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMV 352

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  +N LI    K    + A+ +   M+  +V PN +TY  L+        +D
Sbjct: 353 EKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMD 412

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
              A++  M  +    D   Y  LI
Sbjct: 413 RAMALLNKMVESKLSPDVVTYNTLI 437


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 129/302 (42%), Gaps = 10/302 (3%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N   +NT++  L  + R F   ++ D M+L    P     ++++ G     R+ +  
Sbjct: 156 YEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAV 215

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +M ANG  P+   Y  +++   K  N+  A+ +  +M+  ++KP+  TY  +++  
Sbjct: 216 DLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNL 275

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
              G+LD   +   +M   G   + F Y  LI +  +   R DD A  + +++ +    +
Sbjct: 276 CKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCS-FGRWDDGAQLLRDMITRKITPN 334

Query: 217 SVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
            V  S   ++   E      ++LYN    E + R  G     +T   + +  C + K + 
Sbjct: 335 VVTFSALIDSLVKEGKLTEAKDLYN----EMITR--GIEPNTITYNSLIYGLCND-KRLD 387

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               +++++      PD++     I  +  +  +D+G ++F              Y+TL+
Sbjct: 388 EANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLI 447

Query: 335 EG 336
           +G
Sbjct: 448 QG 449



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 122/288 (42%), Gaps = 16/288 (5%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   ++ ++ SL  + +    +D+Y++M+  G++P    ++SLI G     RL +
Sbjct: 329 RKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDE 388

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                D M + G  PD+  YN LI+   K K  D  +R+F +M    +  +  TY  L+ 
Sbjct: 389 ANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQ 448

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK- 213
               + +L     + ++M + G       YA L+    +     +  A  I++ + + K 
Sbjct: 449 GFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEE--ALGILDQMHKCKM 506

Query: 214 ----GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
               G  ++   G    N++     ++ ++L  +  +  +G  + R +  Y++      +
Sbjct: 507 ELDIGIYNIIIHGMCNANKV-----DDAWSLFCS--LPSKG--VKRDIQSYNIMLSGLCK 557

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
              +   + L   +K+D   PD       IR +L   DI    ++ E+
Sbjct: 558 RSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEE 605



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    +   Y+T++      R+  + + V+ +M+  GV P    +  L+ G      L++
Sbjct: 434 RGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEE 493

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                DQM       D+ +YN +I         D A  +F  +    VK + Q+Y  +L+
Sbjct: 494 ALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLS 553

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK- 213
                  L    A+ R M   G   D   Y  LI AH     R +D  T  ++L+E+ K 
Sbjct: 554 GLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHL----RGNDITTS-VQLIEEMKR 608

Query: 214 -GWSS 217
            G+SS
Sbjct: 609 CGFSS 613


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 134/349 (38%), Gaps = 33/349 (9%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
            R F       EE  RR+ A N   YN +++ L             ++M+  G+ P    
Sbjct: 258 ARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFT 317

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +L+ G  KG RL++     D+M  +G  P+V VY  L+    K   + +A  I  EM 
Sbjct: 318 YGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMI 377

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
              V+PN   Y  L+      GQL     ++ +M   G   D F Y  L+  H     + 
Sbjct: 378 SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDK- 436

Query: 199 DDTATKIIELVEQSKGWSSVETSG-------NNAENEMMGVSKEELYN--LPTAEYV--- 246
            D A +++  +  S    +  T G        N E++  G   EE+ +  L    ++   
Sbjct: 437 -DGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 495

Query: 247 ----HRRGGFLSRL---------------LTVYHVAFHACAELKDVQAMETLLEMLKKDR 287
               H + G +S                 L  Y+      + +  ++  E     ++K  
Sbjct: 496 LIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRG 555

Query: 288 KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             PD +     I  Y  + +++   ++ +  + S   P A+ Y  L+EG
Sbjct: 556 LVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEG 604



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 116/307 (37%), Gaps = 41/307 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        NA  Y  ++   + +    L  +  ++M    V P    ++SLI G    
Sbjct: 479 EEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTV 538

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++   +  Q++  G +PD   Y+ LI    K +N ++A ++ ++M    +KPN  TY
Sbjct: 539 GRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTY 598

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             LL     +   + V +I++ M  +G   D   Y  +I      + R+++     + L 
Sbjct: 599 TDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVI----RNLSRSENMEVAFMVLT 654

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           E       VE +G                              L   L +Y        +
Sbjct: 655 E-------VEKNG------------------------------LVPDLHIYSSLISGLCK 677

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
           + D++    LL+ + K+   P +      I  +  SGDI     VF+  +     P    
Sbjct: 678 MADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVT 737

Query: 330 YATLVEG 336
           Y  L++G
Sbjct: 738 YTALIDG 744



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 139/372 (37%), Gaps = 56/372 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T + +    R F   + V+++M           ++ +I G  +   +++ F F+++M 
Sbjct: 248 YSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 307

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PD   Y  L++  G CK     +A  + +EM    +KPN   Y  L++     G+
Sbjct: 308 DYGLSPDAFTYGALMN--GLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGK 365

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               + I+ +M +AG   +K  Y  LI               KI +L   SK        
Sbjct: 366 AAEAFDILNEMISAGVQPNKIMYDNLIRG-----------LCKIGQLGRASKLL------ 408

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                NEM+ V              HR   F       YH       +  D      LL 
Sbjct: 409 -----NEMIKVG-------------HRPDTF------TYHPLMQGHFQHYDKDGAFELLN 444

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGY 341
            ++     P+ Y     I     +G+      + E+ I     P A +YA L+     G+
Sbjct: 445 EMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI----IGH 500

Query: 342 TPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
           + +G + LA ++L NM   N+   P +     L+      G    A   +  +Q R + P
Sbjct: 501 SKEGHISLACESLENMTKANVL--PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVP 558

Query: 401 SLPAVEAYYNGL 412
                E  Y+GL
Sbjct: 559 D----EFTYSGL 566



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 4/152 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  V+ +L+      +   V  ++  +G+ P   ++ SLI G  K + ++      D+M 
Sbjct: 633 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMA 692

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  P +  YN LI   G C++ D  +A  +F+ +    + PN  TY  L++     G 
Sbjct: 693 KEGLEPGIVCYNALID--GFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGD 750

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           +   + + +DM   G   D F Y  L T  ++
Sbjct: 751 ITDAFDLYKDMLDRGIAPDAFVYNVLATGCSD 782



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E A+         YN ++            R+V+D ++  G+ P    + +LI G  K 
Sbjct: 689 DEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKN 748

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
             + D F     M   G  PD  VYN L + C    + +QA+ + EEM
Sbjct: 749 GDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEM 796



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 116/285 (40%), Gaps = 21/285 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y  ++           +  +   M+  G +P   ++  +I    +   ++  F   
Sbjct: 594 NADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVL 653

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +++ NG +PD+ +Y+ LIS  G CK +D  +A+ + +EM K  ++P    Y  L++   
Sbjct: 654 TEVEKNGLVPDLHIYSSLIS--GLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFC 711

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIE--LVEQSK 213
            +G +     +   + A G   +   Y  LI  +     I  A D    +++  +   + 
Sbjct: 712 RSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAF 771

Query: 214 GWSSVETSGNNAEN-EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
            ++ + T  ++A + E      EE++N     Y H         ++++        +   
Sbjct: 772 VYNVLATGCSDAADLEQALFLTEEMFN---RGYAH---------VSLFSTLVRGFCKRGR 819

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           +Q  E LL ++      P+   V   I  +  +G +   H+VF +
Sbjct: 820 LQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAE 864


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 41/291 (14%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V D M   GV P    + ++I    K  R  D      +MK  G  P+V  YN ++++ G
Sbjct: 379 VIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLG 438

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K   ++  I++  EMK     PN  T+  +L  C+  G+ + V  ++R+M   G   DK 
Sbjct: 439 KKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKD 498

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            +  LI+++  +     D+A    E+V                                 
Sbjct: 499 TFNTLISSYA-RCGSEVDSAKMYGEMV--------------------------------- 524

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
                 + GF +  +T Y+   +A A   D +A E++++ ++     P+       + CY
Sbjct: 525 ------KSGF-TPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCY 577

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTL 353
             +G++    KV ++    + FP   L  TLV         +GM+ A D L
Sbjct: 578 SKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQL 628



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 27  AGAEEYARRNY--------ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           AG E+ A R +        A N   YN+V+  L  + R   +  V  +M L+G  P R  
Sbjct: 405 AGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRAT 464

Query: 79  FHSLI-VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           +++++ V + +G         R +MK  GF PD   +N LIS   +C +   + +++ EM
Sbjct: 465 WNTMLAVCSEEGKHNYVNKVLR-EMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEM 523

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            K    P   TY  LLNA A  G      ++++DM   G   ++  Y+ L+  ++
Sbjct: 524 VKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYS 578



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 1/146 (0%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R +  + ++ D+M   G++       ++I    +   L +   F  ++K NG+ P   +Y
Sbjct: 266 RSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMY 325

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N ++ V GK     +A+ I +EM+     P+  TY  L      AG LD   A++  MT+
Sbjct: 326 NSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTS 385

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADD 200
            G   +   Y  +I A+  K  R DD
Sbjct: 386 KGVMPNAITYTTVIDAY-GKAGREDD 410



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 64/135 (47%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N + +NT++   + + +   +  V  +M   G +P +D F++LI    +     D+  
Sbjct: 459 APNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAK 518

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M  +GF P V  YN L++      +   A  + ++M+    KPN  +Y  LL+  +
Sbjct: 519 MYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYS 578

Query: 158 AAGQLDPVYAIVRDM 172
            AG +  +  + +++
Sbjct: 579 KAGNVRGIEKVEKEI 593



 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 4/94 (4%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +++YD      V P+  L  +L++   K   L+      DQ++  G+ PD+ V N ++S+
Sbjct: 591 KEIYDGQ----VFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSM 646

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             + K   +A  +   + +  ++PN  TY CL++
Sbjct: 647 FSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMD 680


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 34/313 (10%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y TV+       +     ++ D+M   GV+    L  +LI G  +  R+ +     
Sbjct: 110 NEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEAL--- 166

Query: 100 DQMKANG--FLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYE----VKPNGQTYVCL 152
           +Q K+ G    P+V  YN +++   K    D+A+ +F++M K+YE     +P+  +Y  +
Sbjct: 167 EQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTV 226

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           ++A   A ++D  Y   + M A G   +   Y+ LI     K+ R  +    ++ + E+ 
Sbjct: 227 IDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLC-KVDRPSECLELLLHMKEKG 285

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL--------TVYHVAF 264
            G + ++       N M       L+ L   +   +   F  RLL          Y+VA 
Sbjct: 286 FGINIIDF------NAM-------LHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAV 332

Query: 265 HA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
           H  C   +  +A   LLEM++  + +PDV      I  +  +G +D    VF   +  E 
Sbjct: 333 HGLCKAGRVDEAYRILLEMVES-KVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHEC 391

Query: 324 FPPAELYATLVEG 336
            P    + TL+ G
Sbjct: 392 IPHPVTFMTLLHG 404



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 18/298 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+ +L   +R     + +  M   G  P    + SLI G  K  R  +       MK
Sbjct: 223 YSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMK 282

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF  ++  +N ++    K    ++A + FE + K   KPN  TY   ++    AG++D
Sbjct: 283 EKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVD 342

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKII--ELVEQSKGWSSV- 218
             Y I+ +M  +    D   Y+ +I       ++ +ADD  T+++  E +     + ++ 
Sbjct: 343 EAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLL 402

Query: 219 -ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
              S +    E   V  E++ N           GF+  L T Y+V          V++  
Sbjct: 403 HGFSEHKKSREAFRVH-EDMVN----------AGFIPGLQT-YNVLMDCVCGADSVESAL 450

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            +   +K+ ++ PD       I+C   +  +D   +  +        P   +   LVE
Sbjct: 451 EIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVE 508



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 21/267 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++++       R     DV+  MM+    P    F +L+ G  +  + ++ F   + M 
Sbjct: 363 YSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV 422

Query: 104 ANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             GF+P +  YN L+  VCG   + + A+ I+ +MK+ + +P+  TY  L+     A ++
Sbjct: 423 NAGFIPGLQTYNVLMDCVCGA-DSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRV 481

Query: 163 DPVYAIVRDMTAAGAGLD-KFCYAGL-ITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           D     +  M A     +   C+A + +     ++  A      ++E+  Q  G      
Sbjct: 482 DEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLG------ 535

Query: 221 SGNNAENEMMGVSKEELY---NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
                  E   +  EELY       A  + R  GF++   T        C   K  +A+E
Sbjct: 536 -------ETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVE 588

Query: 278 TLLEM-LKKDRKSPDVYIVMQNIRCYL 303
            + +M LK  R     Y+ +    C L
Sbjct: 589 VIEQMVLKGVRPDEGTYVAVLRSLCGL 615



 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 23/161 (14%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N +  + +V  L  Q        V D+++  G QP  + F  L+          + 
Sbjct: 495 NVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILV----------EE 544

Query: 96  FFFRDQ-------MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            + R +       +++ GF+ D A Y+  ++   K    D+A+ + E+M    V+P+  T
Sbjct: 545 LYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGT 604

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           YV +L +     +++   A    M + G      C  GL+T
Sbjct: 605 YVAVLRSLCGLDRVESAIAEFEKMASRG------CAPGLVT 639



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 53/127 (41%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  +A+ Y+  V  +    +     +V + M+L GV+P    + +++       R++   
Sbjct: 563 FVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAI 622

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              ++M + G  P +  Y  LI        +D+A RIFE M      P  QT   L +  
Sbjct: 623 AEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCL 682

Query: 157 AAAGQLD 163
             AG  D
Sbjct: 683 RDAGYQD 689



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 9/154 (5%)

Query: 1   MRLLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
           M LL     H KS      R  F      E+     +      YN ++  +         
Sbjct: 399 MTLLHGFSEHKKS------REAFRVH---EDMVNAGFIPGLQTYNVLMDCVCGADSVESA 449

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
            ++Y  M     QP  + +  LI    +  R+ +   F D M+A+  +P+ A+ + L+ V
Sbjct: 450 LEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEV 509

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             K    D+A  + + + +   +P G+T+  L+ 
Sbjct: 510 LCKQGEVDEACSVLDNVVEVGCQPLGETFKILVE 543



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 61/142 (42%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + +  N  ++N ++ +L            ++ ++  G +P    ++  + G  K  R+ +
Sbjct: 284 KGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDE 343

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +    +M  +   PDV  Y+ +I    K    D+A  +F  M  +E  P+  T++ LL+
Sbjct: 344 AYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLH 403

Query: 155 ACAAAGQLDPVYAIVRDMTAAG 176
             +   +    + +  DM  AG
Sbjct: 404 GFSEHKKSREAFRVHEDMVNAG 425


>gi|242083798|ref|XP_002442324.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
 gi|241943017|gb|EES16162.1| hypothetical protein SORBIDRAFT_08g018230 [Sorghum bicolor]
          Length = 647

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 19  GRRFFVTSAGAEEYARRNYANNA----------------SEYNTVVTSLTS---QRRFFL 59
           G   F  SA    YAR   A  A                  YN V+ +        RF L
Sbjct: 20  GNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTL 79

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
               +  M+ DG+ P R  F+SL+    +   L+D     D+M   G   D+  YN  + 
Sbjct: 80  --GYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTYNTFVD 137

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
              KC N + A ++  +M+   +KPN  TY  L++  +   + D    +   M + G  L
Sbjct: 138 AICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQL 197

Query: 180 DKFCYAGLITAHTNKIPRADDTAT 203
           D+ CY  L+  +  K  + D+ AT
Sbjct: 198 DRVCYNTLLAIYV-KTGKYDEIAT 220



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT V ++       L   V  DM  + ++P    + +L+ G  K  +  +    R++MK
Sbjct: 132 YNTFVDAICKCGNMELATQVVLDMEANNIKPNVVTYSTLMDGFSKLEKYDEALKLREKMK 191

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G   D   YN L+++  K    D+   + E+M+   ++ +  TY  L+N     G+LD
Sbjct: 192 SLGIQLDRVCYNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLD 251

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  +V+DM A G       Y+ LI  ++
Sbjct: 252 MVAFLVQDMRAQGVAPSVLTYSTLIDIYS 280



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 6/245 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++       ++  +  V +DM   G++     ++SLI G  K  RL    F    M+
Sbjct: 202 YNTLLAIYVKTGKYDEIATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMR 261

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  P V  Y+ LI +  K      A  ++ + K+  +K +   +   ++  A  G ++
Sbjct: 262 AQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVE 321

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH-TNKIPRADDTATKIIELV---EQSKGWSSVE 219
              +++ +M   G   +   Y  +I A   +KI   +D     I  V   +  +  + V 
Sbjct: 322 CALSLLDEMIKMGIKPNVVTYNTIIDAFGKSKILTEEDPGNMGIVGVYGGQIVRATNPVT 381

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
             G +A +  M  S+E  + L   + + ++G  +   +  +    +AC+   + +    L
Sbjct: 382 RGGRSATDVRMRRSQELFFILELFQKMVQQG--VRPNVVTFSAILNACSRCNNFEDAALL 439

Query: 280 LEMLK 284
           LE L+
Sbjct: 440 LEQLR 444



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 1/133 (0%)

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           L R  +D  + D    T     +LI    +     +     + MK  G  P    YN +I
Sbjct: 6   LARRAFDSGIADRYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVI 65

Query: 119 SVCGKCKNSDQ-AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
             CGK     +  +  F +M +  + P+ +T+  LL AC+ AG L+    +  +M   G+
Sbjct: 66  DACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGS 125

Query: 178 GLDKFCYAGLITA 190
           G D + Y   + A
Sbjct: 126 GRDIYTYNTFVDA 138



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 64/153 (41%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   Y+T++   +   ++     + + M   G+Q  R  +++L+   +K  +  + 
Sbjct: 159 NIKPNVVTYSTLMDGFSKLEKYDEALKLREKMKSLGIQLDRVCYNTLLAIYVKTGKYDEI 218

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + M+  G   D   YN LI+  GK    D    + ++M+   V P+  TY  L++ 
Sbjct: 219 ATVCEDMENLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDI 278

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + AG     + +  D   +G   D   ++  I
Sbjct: 279 YSKAGMHGDAFNVYLDFKESGLKADVVLFSSFI 311


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 1/181 (0%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YNT++      +R     +++D M L GV      +++LI G  K  R+++   
Sbjct: 473 ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQ 532

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             DQM   G  PD   YN L++   K  +  +A  I + M     +P+  TY  L+    
Sbjct: 533 LMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLC 592

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            AG+++    ++R +   G  L    Y  +I A   +  R+ +      E++E+++   +
Sbjct: 593 KAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRR-KRSKEAVRLFREMIEKAEAPDA 651

Query: 218 V 218
           V
Sbjct: 652 V 652



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L   R   +  ++Y +M   G  P    ++ LI       +LQ+      +M+
Sbjct: 409 YNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEME 468

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            +G   +V  YN LI   G CKN    +A  IF++M+   V  N  TY  L++    + +
Sbjct: 469 VSGCARNVITYNTLID--GFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSER 526

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           ++    ++  M   G   DKF Y  L+T
Sbjct: 527 VEEASQLMDQMIMEGLRPDKFTYNSLLT 554



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 58/129 (44%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           LR + +  + +G  P +  F+ L+ G  K   ++      D M   GF PD+  YN LIS
Sbjct: 285 LRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLIS 344

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
              K    D+A+++  +M + +  PN  TY  +++      Q++    +   +T  G   
Sbjct: 345 GLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILP 404

Query: 180 DKFCYAGLI 188
           D   Y  LI
Sbjct: 405 DVCTYNSLI 413



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 68/155 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  +  +   YN++++ L           V + M+     P    ++++I    K ++++
Sbjct: 329 REGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVE 388

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +       +   G LPDV  YN LI      +N   A+ +++EMK     P+  TY  L+
Sbjct: 389 EATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLI 448

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++    G+L     ++++M  +G   +   Y  LI
Sbjct: 449 DSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLI 483



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 3/171 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ SL  + +     ++  +M + G       +++LI G  K  R+ +     DQM+
Sbjct: 444 YNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQME 503

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   +   YN LI    K +  ++A ++ ++M    ++P+  TY  LL     AG + 
Sbjct: 504 LQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIK 563

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               IV+ M + G   D   Y  LI A   K  R  + ATK++  + Q KG
Sbjct: 564 KAADIVQTMASDGCEPDIVTYGTLI-AGLCKAGRV-EAATKLLRTI-QMKG 611



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 47/107 (43%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV      ++ L+   + G++L+        M + G  PDV+ +N LI    +      A
Sbjct: 155 GVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPA 214

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           I + EEM+ + + P+ +T+  ++      G LD    +   M  AG 
Sbjct: 215 ILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGC 261



 Score = 45.1 bits (105), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD-TFFFRD-Q 101
           YN+++T            D+   M  DG +P    + +LI G  K  R++  T   R  Q
Sbjct: 549 YNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQ 608

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAAAG 160
           MK     P    YN +I    + K S +A+R+F EM +    P+  TY +     C   G
Sbjct: 609 MKGINLTPHA--YNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGG 666

Query: 161 QLDPVYAIVRDMTAAG 176
            +      V +M   G
Sbjct: 667 PIGEAVDFVMEMLERG 682



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 62/155 (40%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R  +  +   +N +V  L+         +V D M+ +G  P    ++SLI G  K   + 
Sbjct: 294 REGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVD 353

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     +QM      P+   YN +IS   K    ++A ++   +    + P+  TY  L+
Sbjct: 354 EAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLI 413

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                +        + ++M   G   D+F Y  LI
Sbjct: 414 QGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLI 448



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 37/215 (17%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L    +  L+   + +M+  G++P    F+ LI    +  +++      
Sbjct: 159 NTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLM 218

Query: 100 DQMKANGFLPDVAVYNYLIS---------------------------------VCGKCKN 126
           ++M+  G LPD   +  ++                                  V G CK 
Sbjct: 219 EEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKE 278

Query: 127 S--DQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
              ++A+R  EEM   E   P+  T+  L+N  +  G +     ++  M   G   D + 
Sbjct: 279 GRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYT 338

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
           Y  LI+    K+   D+    + +++E+    ++V
Sbjct: 339 YNSLISGLC-KLGEVDEAVKVLNQMIERDCSPNTV 372



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 85  GTMKGSRLQDTFFFRDQMKA-NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           G  K  R+++   F ++M    GF PD   +N L++   K  +   A+ + + M +    
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFD 333

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           P+  TY  L++     G++D    ++  M       +   Y  +I+ 
Sbjct: 334 PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIIST 380


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 2/167 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQ 93
           R     A  YN+++  L  + ++  + ++Y++M  +G  QP    + +LI    K  R  
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQD 247

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 ++MK NG  P   +Y  +IS+  K  N   A+ +FEEM+    +P+  TY  L+
Sbjct: 248 SAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELI 307

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
                AG++D  Y    +M   G   D      +I     K  R DD
Sbjct: 308 RGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMIN-FLGKAGRLDD 353



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 1/161 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           EE    +   N   YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K
Sbjct: 359 EEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCK 418

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            +R++      ++M   GF P  A Y  LI   GK K  D A  +F+E+K+     + + 
Sbjct: 419 TNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV 478

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           Y  ++     AG+LD    +  +M+  G   + + Y  L++
Sbjct: 479 YAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 2/180 (1%)

Query: 13  SVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           S+  ALG+  R+ +     +E      +++A  Y  ++  L    R     +++D+M   
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKL 505

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P    +++L+ G  +   L +      +M+ +G LPD+  YN +++   K     +A
Sbjct: 506 GCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRA 565

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +   MK   +KP+  +Y  +L+A + AG  +    ++++M A G   D   Y+ ++ A
Sbjct: 566 MEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEA 625



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 14/162 (8%)

Query: 46  TVVTSLTSQRRFFLLRDV------YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           T++ SL     FF L +V      +++M     +P    +  LI G  K  R+ + + F 
Sbjct: 269 TMIISL-----FFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFY 323

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AA 158
            +M+  G  PD  V N +I+  GK    D  +++FEEM      PN  TY  ++ A   +
Sbjct: 324 HEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFES 383

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
             ++  V++    M  +G     F Y+ LI     TN+I +A
Sbjct: 384 KSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKA 425



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 72/161 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +    + Y +++ +L   +R+ L  +++ ++  +    +  ++  +I    K 
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKA 489

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D     D+M   G  P+V  YN L+S   +    D+A+    +M+++   P+  +Y
Sbjct: 490 GRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSY 549

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +LN  A  G       ++ +M  +    D   Y  +++A
Sbjct: 550 NIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSA 590



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y +M  +G +P   + +++I    K  RL D     ++M  +  +P+V  YN +I    +
Sbjct: 323 YHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFE 382

Query: 124 CKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
            K+   +    FE MK   + P+  TY  L++      +++    ++ +M   G      
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPA 442

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            Y  LI A   K  R  D A ++ + ++++ G SS
Sbjct: 443 AYCSLIDA-LGKAKRY-DLACELFQELKENCGSSS 475


>gi|384251863|gb|EIE25340.1| hypothetical protein COCSUDRAFT_40616 [Coccomyxa subellipsoidea
           C-169]
          Length = 852

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 65/129 (50%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D+Y DM  +GV P   L+ +L+        L+  F  +D+M  +G  P     + LI  C
Sbjct: 315 DIYGDMQRNGVDPDERLYATLMGVAGAAGNLELAFSLQDEMVMDGLRPSKLTQSALIQAC 374

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
             C   ++A +++  M++    P+ Q    L+NA   A +L  V ++V+D+ AAG   D 
Sbjct: 375 IDCGALERARQLYAAMQEQGRAPSLQALNNLINAHGRACRLGDVVSLVQDLAAAGMRPDA 434

Query: 182 FCYAGLITA 190
           F +A ++ A
Sbjct: 435 FTFAAILNA 443



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++ L+   +K   L       D +K+ G   D  +Y  LISVC    N+D A  ++  MK
Sbjct: 119 YNMLVSVCVKAKDLTQALHAADMLKSTGRKLDTILYTNLISVCAAVGNADAAFELYAAMK 178

Query: 139 KYEVKPNGQTYVCLLNACA 157
              VK   Q Y  L++AC+
Sbjct: 179 AEAVKTEAQVYTALISACS 197



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           D   YN L+SVC K K+  QA+   + +K    K +   Y  L++ CAA G  D  + + 
Sbjct: 115 DARTYNMLVSVCVKAKDLTQALHAADMLKSTGRKLDTILYTNLISVCAAVGNADAAFELY 174

Query: 170 RDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI-IELVEQSKG 214
             M A     +   Y  LI+A + +I        ++ + L+E+++G
Sbjct: 175 AAMKAEAVKTEAQVYTALISACSREILDTPPANRRVQLVLLERARG 220



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 52/108 (48%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D+M++DG++P++    +LI   +    L+        M+  G  P +   N LI+  G
Sbjct: 351 LQDEMVMDGLRPSKLTQSALIQACIDCGALERARQLYAAMQEQGRAPSLQALNNLINAHG 410

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170
           +       + + +++    ++P+  T+  +LNAC  A + +  + + R
Sbjct: 411 RACRLGDVVSLVQDLAAAGMRPDAFTFAAILNACQRANEAELAFDVYR 458



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 2/154 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG--TMKGSRLQDTFF 97
           +A  Y ++V +     R  L   VY   + +    +  ++ S I    T K   L     
Sbjct: 256 DAHTYASLVDACARAGRADLAIRVYHKALRERCDASLLVYASAIAACRTAKPVDLTTAMD 315

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M+ NG  PD  +Y  L+ V G   N + A  + +EM    ++P+  T   L+ AC 
Sbjct: 316 IYGDMQRNGVDPDERLYATLMGVAGAAGNLELAFSLQDEMVMDGLRPSKLTQSALIQACI 375

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             G L+    +   M   G          LI AH
Sbjct: 376 DCGALERARQLYAAMQEQGRAPSLQALNNLINAH 409



 Score = 38.5 bits (88), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 14/130 (10%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R V  ++  +G++P   L+++LI    +              + +G   D   Y  L+  
Sbjct: 219 RGVLGEVRANGLRPDAILWNALITAAGRAG------------QGSGCKADAHTYASLVDA 266

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA--IVRDMTAAGAG 178
           C +   +D AIR++ +  +     +   Y   + AC  A  +D   A  I  DM   G  
Sbjct: 267 CARAGRADLAIRVYHKALRERCDASLLVYASAIAACRTAKPVDLTTAMDIYGDMQRNGVD 326

Query: 179 LDKFCYAGLI 188
            D+  YA L+
Sbjct: 327 PDERLYATLM 336


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 66  DMMLD----GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++L+    G++P    +++LI    +GS L D     ++M A+   PD+  YN ++SV 
Sbjct: 121 DLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVH 180

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+C  +  A R+F E+ +   KP+  TY  LL A A  G  D V  +  ++  AG   D 
Sbjct: 181 GRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDG 240

Query: 182 FCYAGLITAHTNKIPRAD 199
             Y  +I  +  K+ R D
Sbjct: 241 ITYNTMIHMY-GKMGRLD 257



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 68/161 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R  +  +   YNT++       R  L   +YD+M   G  P    +  LI    K 
Sbjct: 229 EELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKM 288

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ D     ++M   G  P +  ++ LI    K    ++A+R F  M    VKP+   Y
Sbjct: 289 DRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAY 348

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +L+  A +G +  + A+ + M   G   D   Y  ++ A
Sbjct: 349 LVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAA 389



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++++ +          V+++MM    +P    +++++    +  + QD      ++ 
Sbjct: 138 YNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELV 197

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF PD   YN L+    K  ++D   R+ EE+ +   K +G TY  +++     G+LD
Sbjct: 198 EKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLD 257

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
               +  +M A G   D   Y  LI +   K+ R  D A K++E
Sbjct: 258 LALGLYDEMRALGCTPDAVTYTVLIDS-LGKMDRISD-AGKVLE 299



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R  +  + +  NT++   T    F    +VY  ++  G++P  D +++LIV   +  
Sbjct: 754 EMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNL 813

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R ++ F   ++M   G  P +  Y  L++  GK K  +QA ++FEE++    + N   Y 
Sbjct: 814 RPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYH 873

Query: 151 CLL----NAC 156
            L+    +AC
Sbjct: 874 MLMKIYRDAC 883



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  ++ SL    R      V ++M   G++PT   F +LI    KG R ++     
Sbjct: 274 DAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTF 333

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M A+G  PD   Y  ++ +  +  +  + + +++ M     +P+   Y  +L A A  
Sbjct: 334 SHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKG 393

Query: 160 GQLDPVYAIVRDM 172
            + D + A+V+DM
Sbjct: 394 NEYDEIEAVVQDM 406



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   + +  +A  YN+++ +   +     +  V ++++  G +     ++++I    K  
Sbjct: 195 ELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMG 254

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL       D+M+A G  PD   Y  LI   GK      A ++ EEM    +KP   T+ 
Sbjct: 255 RLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFS 314

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            L+ A A  G+ +        M A+G   D+  Y
Sbjct: 315 ALICAYAKGGRREEAVRTFSHMVASGVKPDRLAY 348



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++ + T     F +  +Y+ M   G  P   ++ S+I    +  R +D      +M+  G
Sbjct: 700 MLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAG 759

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           F PD+ + N L+ +     N D+ + ++  + +  ++PN  TY  L+
Sbjct: 760 FEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLI 806


>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Glycine max]
          Length = 768

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +   YN+++T+L    +      VY+++     QP R  + +LI    K  R++D   
Sbjct: 247 APDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAIR 306

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             +QM++NGF PD   YN L+    K     +A ++FE+M +  V+P+  TY  L++   
Sbjct: 307 IFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGLF 366

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             G+ +  Y +  D+   G  +D   Y+ ++
Sbjct: 367 RNGRAEAAYTMFCDLKKKGQFVDGITYSIVV 397



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 11/119 (9%)

Query: 92  LQDTFFFRDQMKA--NGFL-PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           L   F    +MK    GF+ PD+  YN LI+   +    D AI ++EE+     +P+  T
Sbjct: 228 LATCFALFKEMKGGNKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFT 287

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           Y  L+ AC+   +++    I   M + G   D   Y  L+  H          ATK++E
Sbjct: 288 YTNLIQACSKTYRMEDAIRIFNQMQSNGFRPDTLAYNSLLDGHFK--------ATKVME 338



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV-GTMKGSRLQDTFFFRDQM 102
           YN++++S   +  F     +  +M  +   PT    +++I+ G  K  R        D++
Sbjct: 600 YNSIMSSFVKKGYFAEAWAILTEMG-EKFCPTDIATYNMIIQGLGKMGRADLASAVLDRL 658

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              G   D+ +YN LI+  GK    D+  ++FE+M+   + P+  TY  L+   + AG+L
Sbjct: 659 LRQGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRL 718

Query: 163 DPVYAIVRDMTAAGA 177
              Y  ++ M  AG 
Sbjct: 719 KDAYKFLKMMLDAGC 733



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 59/128 (46%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M  +G +P    ++SL+ G  K +++ +     ++M   G  P    YN LI    
Sbjct: 307 IFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGLF 366

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +   ++ A  +F ++KK     +G TY  ++      GQL+    +V +M + G  +D  
Sbjct: 367 RNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGFVVDLV 426

Query: 183 CYAGLITA 190
               L+ +
Sbjct: 427 TITSLLIS 434



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 48/117 (41%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           V P    ++SLI    +  ++ D     +++  +   PD   Y  LI  C K    + AI
Sbjct: 246 VAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAI 305

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           RIF +M+    +P+   Y  LL+    A ++     +   M   G     + Y  LI
Sbjct: 306 RIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILI 362



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           NT ++   ++ +  L   +++     GV P    ++S++   +K     + +    +M  
Sbjct: 566 NTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEM-G 624

Query: 105 NGFLP-DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             F P D+A YN +I   GK   +D A  + + + +     +   Y  L+NA   A ++D
Sbjct: 625 EKFCPTDIATYNMIIQGLGKMGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKASRID 684

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  +   M ++G   D   Y  LI  H+
Sbjct: 685 EVNKLFEQMRSSGINPDVVTYNTLIEVHS 713



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 2/140 (1%)

Query: 11  HKSVGGALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM 68
           + S+  +  ++ +   A A   E   +    + + YN ++  L    R  L   V D ++
Sbjct: 600 YNSIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYNMIIQGLGKMGRADLASAVLDRLL 659

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
             G      ++++LI    K SR+ +     +QM+++G  PDV  YN LI V  K     
Sbjct: 660 RQGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRLK 719

Query: 129 QAIRIFEEMKKYEVKPNGQT 148
            A +  + M      PN  T
Sbjct: 720 DAYKFLKMMLDAGCSPNHVT 739


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R++   +    NT++ SL    +    RDV+D M + G  P    +  ++ G    
Sbjct: 315 KEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  P +  +N LI     C   D+A+ IF EM+ + VKP+  TY
Sbjct: 375 GCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTY 434

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + ++ A    G++D        M   G   DK+ Y  LI
Sbjct: 435 MTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLI 473



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 62/151 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+     +       D++ +M+  G+ P    + S++    K   +     F  QM 
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMV 283

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD   YN LI          +A+R+F+EM++  + P+      L+ +    G++ 
Sbjct: 284 NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK 343

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               +   M   G   D F Y  ++  +  K
Sbjct: 344 EARDVFDTMAMKGQNPDVFSYTIMLNGYATK 374



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 67/142 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + +++ +L    R    ++++D  +  G+ P   +++ L+ G     +++      D M 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+V  Y  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 623

Query: 164 PVYAIVRDMTAAGAGLDKFCYA 185
           P      +MT +G  ++K  Y+
Sbjct: 624 PAKVKFHEMTESGIAMNKCTYS 645



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++    +       +++  ++M +G++     F S+I    K  R+ D     D   
Sbjct: 469 YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTV 528

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD  VYN L+         ++A+R+F+ M    ++PN   Y  L+N     G++D
Sbjct: 529 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 588

Query: 164 PVYAIVRDMTAAG 176
              ++ R+M   G
Sbjct: 589 EGLSLFREMLQKG 601



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PDV  YN +I    K  + ++A  +F+EM +  + P+  TY  +++A   A  +D   A 
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAF 278

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTN 193
           +R M   G   D + Y  LI  +++
Sbjct: 279 LRQMVNKGVLPDNWTYNNLIYGYSS 303



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 3/176 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFFRDQM 102
           Y TV+ +L    +     + ++ M+  GV P +  +H LI G    GS L+      + M
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIM 493

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             NG   D+  +  +I+   K      A  IF+      + P+   Y  L++     G++
Sbjct: 494 N-NGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 552

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
           +    +   M +AG   +   Y  L+  +  KI R D+  +   E++++    S++
Sbjct: 553 EKALRVFDAMVSAGIEPNVVGYGTLVNGYC-KIGRIDEGLSLFREMLQKGIKPSTI 607



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 64/164 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y++VV +L   R           M+  GV P    +++LI G    
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + ++      +M+    LPDV   N L+    K     +A  +F+ M      P+  +Y
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 364

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +LN  A  G L  +  +   M   G       +  LI A+ N
Sbjct: 365 TIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYAN 408


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y +++       +  +  +V   M  DG QP    ++SL+ G +K  +L       
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520

Query: 100 DQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+ +G +P+V  Y  L+   G+C   + D A R+FE M++  +KP+   Y  L +A  
Sbjct: 521 TKMQKDGIIPNVITYTTLLQ--GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALC 578

Query: 158 AAGQLDPVYA-IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
            AG+ +  Y+ IVR     G  L K  Y  LI   + K    D  AT I  ++++
Sbjct: 579 KAGRAEEAYSFIVRK----GVALTKVYYTTLIDGFS-KAGNTDFAATLIERMIDE 628



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   + N   +  +++ L    R    R ++D M  +GV P+   ++++IVG  K  R+ 
Sbjct: 281 RDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMN 340

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKC-KNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           D    ++ M+ NG  PD   YN LI   G C + +++A  +     K    P   T+  L
Sbjct: 341 DALKIKELMEKNGCHPDDWTYNTLIY--GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNL 398

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +N    A + D    +   M ++   LD   +  LI +   K
Sbjct: 399 INGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 51/118 (43%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  G+ PT   + SLI G  K  RL++     D M   G  P+  +Y  LI  C   K 
Sbjct: 816 MVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKF 875

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            ++A+     M +   +P  ++Y  L+      G  + V ++  D+   G   D+  +
Sbjct: 876 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAW 933



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 30/270 (11%)

Query: 39  NNASE--YNTVVTSLTSQRRFFLLRDVYDD-------MMLDGVQPTRDLFHSLIVGTMKG 89
           NNA +  +   V + T+    + + + +DD       MM    +    +F  LI   +K 
Sbjct: 381 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            RL++     +++ ANG +P+V  Y  +I   G CK+   D A+ + + M++   +PN  
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIID--GYCKSGKVDIALEVLKMMERDGCQPNAW 498

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  L+       +L    A++  M   G   +   Y  L+    ++     D A ++ E
Sbjct: 499 TYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDE--HDFDNAFRLFE 556

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE----YVHRRGGFLSRLLTVYHVA 263
           ++EQ         +G   +     V  + L     AE    ++ R+G  L+++   Y   
Sbjct: 557 MMEQ---------NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKV--YYTTL 605

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVY 293
               ++  +     TL+E +  +  +PD Y
Sbjct: 606 IDGFSKAGNTDFAATLIERMIDEGCTPDSY 635



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 2/185 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+  A     Y T++   +          + + M+ +G  P    +  L+    K  RL 
Sbjct: 592 RKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN 651

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     DQM   G    +  Y  LI    +    D A R++ EM     KP+  TY   +
Sbjct: 652 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 711

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQ 211
           N+    G+L+    ++  M   G   D   Y  LI    H   I RA  T  +++    +
Sbjct: 712 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 771

Query: 212 SKGWS 216
              W+
Sbjct: 772 PNYWT 776



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + +Y++M   G +P+   +   I    K  RL+D      +M+  G  PDV  YN LI  
Sbjct: 689 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           CG     D+A    + M     +PN  TY CLL      G L    A VR +  +G
Sbjct: 749 CGHMGYIDRAFSTLKRMVGASCEPNYWTY-CLLLKHLLKGNL----AYVRSVDTSG 799



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 39/87 (44%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M  DG  P    F  LI G  K  R+ D     D M  NG +P V  YN +I    K   
Sbjct: 279 MKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 338

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            + A++I E M+K    P+  TY  L+
Sbjct: 339 MNDALKIKELMEKNGCHPDDWTYNTLI 365



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++ +L  Q+R      + D M L G++ T   +  LI   ++  +        ++M 
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G  P    Y   I+   K    + A  +  +M++  V P+  TY  L++ C   G +D
Sbjct: 697 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYID 756

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK----IPRADDTATKIIELVEQSKGWSSVE 219
             ++ ++ M  A    + + Y  L+  H  K      R+ DT + +  L+E    W  +E
Sbjct: 757 RAFSTLKRMVGASCEPNYWTYC-LLLKHLLKGNLAYVRSVDT-SGMWNLIELDITWQLLE 814



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  Q+      ++ ++ + +G  PT   F +LI G     +  D    +++M 
Sbjct: 361 YNTLIYGLCDQKTEEA-EELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM 419

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++    D+ V+  LI+   K     +A  +  E+    + PN  TY  +++    +G++D
Sbjct: 420 SSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVD 479

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +++ M   G   + + Y  L+
Sbjct: 480 IALEVLKMMERDGCQPNAWTYNSLM 504



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 44  YNTVVTS------LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           YNT++ S      LT+  R F L      ++  G++P     ++L++G  +   L+   +
Sbjct: 186 YNTMIKSYCKEGDLTTAHRCFRL------LLEGGLEPETFTCNALVLGYCRTGELRKACW 239

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M   G   +   Y  LI    + K   +A+ +F  MK+    PN + +  L++   
Sbjct: 240 LFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLC 299

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            +G++     +   M   G       Y  +I  ++ K+ R +D A KI EL+E++
Sbjct: 300 KSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS-KLGRMND-ALKIKELMEKN 352



 Score = 38.1 bits (87), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M L G Q     +  LI G  +   +++       MK +G  P+V  + +LIS  G CK+
Sbjct: 244 MPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLIS--GLCKS 301

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
                A  +F+ M +  V P+  TY  ++   +  G+++    I   M   G   D + Y
Sbjct: 302 GRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTY 361

Query: 185 AGLI 188
             LI
Sbjct: 362 NTLI 365


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A ++N ++  +    +    R+++D+M+  GV PT   F++L+ G  K S L      R 
Sbjct: 244 AKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRG 303

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            M   G  PDV  Y   +    K      A+ +FEEM++  V PN   +  L++A    G
Sbjct: 304 LMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEG 363

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD--TATKIIE 207
            +     + R+M   G   D   Y  L     N + R  D   A  I+E
Sbjct: 364 NVAAGLELHREMATRGIKTDLVAYNAL----ANGLCRVRDLKAANDIVE 408



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A+   A +   Y   +  L    R     +++++M   GV P   +F +LI    K   +
Sbjct: 306 AKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNV 365

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                   +M   G   D+  YN L +   + ++   A  I EEM+   +KP+  TY  L
Sbjct: 366 AAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTL 425

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           ++     G+LD    + ++M+  G  LD+  Y  LI+   +K  R+ D+   + E++E
Sbjct: 426 IDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISG-LSKSGRSVDSERILCEMME 482



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 3/154 (1%)

Query: 26  SAGAE---EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL 82
           +AG E   E A R    +   YN +   L   R      D+ ++M  +G++P +  + +L
Sbjct: 366 AAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTL 425

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           I G  K   L      + +M   G   D   Y  LIS   K   S  + RI  EM +  +
Sbjct: 426 IDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGL 485

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +P+  TY  +++A      +   + ++++M   G
Sbjct: 486 EPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 4/164 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        +   Y T++     +    +  ++  +M  +GV      + +LI G  K 
Sbjct: 408 EEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKS 467

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            R  D+     +M   G  PD   Y  +I     CKNSD     ++ +EM+    KP   
Sbjct: 468 GRSVDSERILCEMMEAGLEPDNTTYTMVIDAF--CKNSDVKTGFKLLKEMQNKGRKPGVV 525

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           TY  ++N     GQ+     ++  M   G   D   Y  L+  H
Sbjct: 526 TYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGH 569



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y  ++  GV P    F+ L+   ++  +L       D+M   G  P V  +N L+S  G 
Sbjct: 232 YLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMS--GM 289

Query: 124 CKNSD----QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           CK SD     A+R    M K  V P+  TY   +     AG++     +  +M   G   
Sbjct: 290 CKASDLNSANALRGL--MAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNP 347

Query: 180 DKFCYAGLITAHTNK 194
           +   +  LI AH  +
Sbjct: 348 NTVVFTTLIDAHCKE 362



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    N   + T++ +   +       +++ +M   G++     +++L  G  + 
Sbjct: 338 EEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRV 397

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L+      ++M+ NG  PD   Y  LI   G CK    D A+ + +EM    V  +  
Sbjct: 398 RDLKAANDIVEEMRNNGLKPDKVTYTTLID--GFCKEGELDMAMEMKQEMSDEGVALDEV 455

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           TY  L++  + +G+      I+ +M  AG   D   Y  +I A
Sbjct: 456 TYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDA 498


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y +++       +  +  +V   M  DG QP    ++SL+ G +K  +L       
Sbjct: 461 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 520

Query: 100 DQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+ +G +P+V  Y  L+   G+C   + D A R+FE M++  +KP+   Y  L +A  
Sbjct: 521 TKMQKDGIIPNVITYTTLLQ--GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALC 578

Query: 158 AAGQLDPVYA-IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
            AG+ +  Y+ IVR     G  L K  Y  LI   + K    D  AT I  ++++
Sbjct: 579 KAGRAEEAYSFIVRK----GVALTKVYYTTLIDGFS-KAGNTDFAATLIERMIDE 628



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   + N   +  +++ L    R    R ++D M  +GV P+   ++++IVG  K  R+ 
Sbjct: 281 RDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMN 340

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKC-KNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           D    ++ M+ NG  PD   YN LI   G C + +++A  +     K    P   T+  L
Sbjct: 341 DALKIKELMEKNGCHPDDWTYNTLIY--GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNL 398

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +N    A + D    +   M ++   LD   +  LI +   K
Sbjct: 399 INGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 51/118 (43%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  G+ PT   + SLI G  K  RL++     D M   G  P+  +Y  LI  C   K 
Sbjct: 816 MVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKF 875

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            ++A+     M +   +P  ++Y  L+      G  + V ++  D+   G   D+  +
Sbjct: 876 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAW 933



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 30/270 (11%)

Query: 39  NNASE--YNTVVTSLTSQRRFFLLRDVYDD-------MMLDGVQPTRDLFHSLIVGTMKG 89
           NNA +  +   V + T+    + + + +DD       MM    +    +F  LI   +K 
Sbjct: 381 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            RL++     +++ ANG +P+V  Y  +I   G CK+   D A+ + + M++   +PN  
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIID--GYCKSGKVDIALEVLKMMERDGCQPNAW 498

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  L+       +L    A++  M   G   +   Y  L+    ++     D A ++ E
Sbjct: 499 TYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDE--HDFDNAFRLFE 556

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE----YVHRRGGFLSRLLTVYHVA 263
           ++EQ         +G   +     V  + L     AE    ++ R+G  L+++   Y   
Sbjct: 557 MMEQ---------NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKV--YYTTL 605

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVY 293
               ++  +     TL+E +  +  +PD Y
Sbjct: 606 IDGFSKAGNTDFAATLIERMIDEGCTPDSY 635



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 2/185 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+  A     Y T++   +          + + M+ +G  P    +  L+    K  RL 
Sbjct: 592 RKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLN 651

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     DQM   G    +  Y  LI    +    D A R++ EM     KP+  TY   +
Sbjct: 652 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 711

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQ 211
           N+    G+L+    ++  M   G   D   Y  LI    H   I RA  T  +++    +
Sbjct: 712 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 771

Query: 212 SKGWS 216
              W+
Sbjct: 772 PNYWT 776



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + +Y++M   G +P+   +   I    K  RL+D      +M+  G  PDV  YN LI  
Sbjct: 689 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           CG     D+A    + M     +PN  TY CLL      G L    A VR +  +G
Sbjct: 749 CGHMGYIDRAFSTLKRMVGASCEPNYWTY-CLLLKHLLKGNL----AYVRSVDTSG 799



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 39/87 (44%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M  DG  P    F  LI G  K  R+ D     D M  NG +P V  YN +I    K   
Sbjct: 279 MKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 338

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            + A++I E M+K    P+  TY  L+
Sbjct: 339 MNDALKIKELMEKNGCHPDDWTYNTLI 365



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++ +L  Q+R      + D M L G++ T   +  LI   ++  +        ++M 
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G  P    Y   I+   K    + A  +  +M++  V P+  TY  L++ C   G +D
Sbjct: 697 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYID 756

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK----IPRADDTATKIIELVEQSKGWSSVE 219
             ++ ++ M  A    + + Y  L+  H  K      R+ DT + +  L+E    W  +E
Sbjct: 757 RAFSTLKRMVGASCEPNYWTYC-LLLKHLLKGNLAYVRSVDT-SGMWNLIELDITWQLLE 814



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  Q+      ++ ++ + +G  PT   F +LI G     +  D    +++M 
Sbjct: 361 YNTLIYGLCDQKTEEA-EELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM 419

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++    D+ V+  LI+   K     +A  +  E+    + PN  TY  +++    +G++D
Sbjct: 420 SSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVD 479

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +++ M   G   + + Y  L+
Sbjct: 480 IALEVLKMMERDGCQPNAWTYNSLM 504



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 44  YNTVVTS------LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           YNT++ S      LT+  R+F L      ++  G++P     ++L++G  +   L+   +
Sbjct: 186 YNTMIKSYCKEGDLTTAHRYFRL------LLEGGLEPETFTCNALVLGYCRTGELRKACW 239

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M   G   +   Y  LI      K   +A+ +F  MK+    PN + +  L++   
Sbjct: 240 LFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLC 299

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            +G++     +   M   G       Y  +I  ++ K+ R +D A KI EL+E++
Sbjct: 300 KSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS-KLGRMND-ALKIKELMEKN 352


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P    +++LI    +GS  ++      QMK  GF PD   YN L+ V GK +   +A
Sbjct: 259 GVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEA 318

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +++ +EM+     P   TY  L++A A  G L+    +   M   G   D F Y  L++ 
Sbjct: 319 MKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSG 378



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 82/182 (45%)

Query: 13  SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           +V G +G  +   +A  E    R  A +   YNT+++       +     ++  M L+G 
Sbjct: 236 NVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGF 295

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
            P +  +++L+    K  R Q+      +M+ANGF P    YN LIS   K    ++A+ 
Sbjct: 296 TPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALD 355

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +  +M    +KP+  TY  LL+    AG+ D    +  +M A G   +   +  LI  H 
Sbjct: 356 LKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHG 415

Query: 193 NK 194
           N+
Sbjct: 416 NR 417



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 137/327 (41%), Gaps = 35/327 (10%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           N   +N ++    ++ +F  +  V+DD+ L    P    +++L+ V    G   Q +  F
Sbjct: 403 NICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIF 462

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           + +MK  GF+ +   +N LIS   +C + DQA+ +++ M +  V P+  TY  +L A A 
Sbjct: 463 K-EMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE--------- 207
            G  +    ++ +M       ++  Y+ L+ A+ N  +I R +  A +I           
Sbjct: 522 GGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVL 581

Query: 208 ----LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL------- 256
               ++  SK    +ET     E    G+S  ++  L     ++ R   +++        
Sbjct: 582 LKTLVLVNSKSDLLIETERAFLELRRRGISP-DITTLNAMLSIYGRKQMVAKAHEILNFM 640

Query: 257 --------LTVYHVAFHACAELKDVQAMETLL-EMLKKDRKSPDVYIVMQNIRCYLHSGD 307
                   LT Y+   +  +  ++ Q  E +L E+L+K  K PD       I  Y  +G 
Sbjct: 641 HETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMK-PDRISYNTVIYAYCRNGR 699

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLV 334
           +    ++F +   S   P    Y T +
Sbjct: 700 MKEASRIFSEMKDSALVPDVVTYNTFI 726



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 61/132 (46%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + YN+++   +    F    ++  +++  G++P R  ++++I    +  R+++      +
Sbjct: 650 TTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSE 709

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MK +  +PDV  YN  I+         +AI +   M K   KP+  TY  +++      Q
Sbjct: 710 MKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQ 769

Query: 162 LDPVYAIVRDMT 173
                + V++++
Sbjct: 770 RHEANSFVKNLS 781



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 62/158 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR  + + +  N +++    ++      ++ + M      P+   ++SL+    +  
Sbjct: 604 ELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSE 663

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             Q +     ++   G  PD   YN +I    +     +A RIF EMK   + P+  TY 
Sbjct: 664 NFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYN 723

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +   AA         +VR M   G   D+  Y  ++
Sbjct: 724 TFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIV 761


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 135/336 (40%), Gaps = 36/336 (10%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR+   +A+ ++ ++  L           +  +   +G       + +++    K  
Sbjct: 214 EAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNK 273

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++Q+     +++ ANG  P +A YN L++   K    ++AI +  ++      P+  TY 
Sbjct: 274 KIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 333

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADD-------- 200
            L++      +    Y + ++M + G  LD  CY  LI     T KIP+A          
Sbjct: 334 SLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSH 393

Query: 201 -------TATKIIELVEQS-------KGWSSVETSGNNAENEMM------GVSKEELYNL 240
                  T + +I+ + ++       + + S+E  G  A NE++      G+ K    + 
Sbjct: 394 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG-LAPNEVVYSALIHGLCKARKMDC 452

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
                   +  F +     Y++      +  DV+A     + + +    PDVY     I 
Sbjct: 453 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 512

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               +G+ D    V +D + S +F    +Y++LV+G
Sbjct: 513 GLCKAGNTDAACGVLDD-MSSSRF----VYSSLVDG 543



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 66/160 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E A R  A +   Y  ++  L    +      VY  M   G  P      ++I G  K 
Sbjct: 353 KEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 412

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+         M+A G  P+  VY+ LI    K +  D A+ +  +MKK    P+  TY
Sbjct: 413 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 472

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             L++    +G ++   A   +M  AG   D + Y  LI+
Sbjct: 473 NILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 512


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 2/171 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ ++ +L  + +     ++Y DM+  G+ PT   ++S+I G  K  RL D     D M 
Sbjct: 149 FSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMA 208

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  ++ LI+   K K  D  + IF EM +  +  N  TY  L++     G LD
Sbjct: 209 SKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 268

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               ++  M ++G   +   +  ++ +  +K  +    A  I+E +++S+G
Sbjct: 269 AAQDLLNVMISSGVAPNYITFQSMLASLCSK--KELRKAFAILEDLQKSEG 317



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 54/139 (38%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR        YN+++     Q R    + + D M      P    F +LI G  K  R+ 
Sbjct: 174 RRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVD 233

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +      +M   G + +   Y  LI    +  + D A  +   M    V PN  T+  +L
Sbjct: 234 NGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSML 293

Query: 154 NACAAAGQLDPVYAIVRDM 172
            +  +  +L   +AI+ D+
Sbjct: 294 ASLCSKKELRKAFAILEDL 312



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 106/293 (36%), Gaps = 45/293 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T++  L  + R      + D M+ +G QP    + ++I G  K    +       +M+
Sbjct: 13  FTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKME 68

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                  V +YN +I    K  +   A  +F EM    + P+  TY  ++++   +G+  
Sbjct: 69  ETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWT 128

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               ++RDM       D   ++ LI A                 LV++ K   + E  G+
Sbjct: 129 DAEQLLRDMIERQINPDVVTFSALINA-----------------LVKEGKVSEAEEIYGD 171

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                                 + RRG F + +   Y+       +   +   + +L+ +
Sbjct: 172 ----------------------MLRRGIFPTTI--TYNSMIDGFCKQDRLNDAKRMLDSM 207

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                SPDV      I  Y  +  +DNG ++F +            Y TL+ G
Sbjct: 208 ASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHG 260


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 35/297 (11%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   + + ++   YNT+V  L+ Q        +  DMM  G  P    ++ ++ G  K  
Sbjct: 381 EAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMG 440

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L D     +   A G +PD+  +N LI    K +N D+AI I + M  + + P+  TY 
Sbjct: 441 CLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYN 500

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            LLN    A +LD V    + M   G   +   Y  LI +        D   ++ +EL +
Sbjct: 501 TLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCK-----DRKVSEAMELFK 555

Query: 211 QSKG-------------WSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
           + K                 + ++G  + A    + + KE  ++  TA            
Sbjct: 556 EMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTA------------ 603

Query: 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGH 312
              ++++  +A  E  +V   E L   +     +PD Y     I  Y  +G+ID  H
Sbjct: 604 ---IFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAH 657



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  ++    +   +N ++  L  +        ++  +M  GV P    F+  I G  + 
Sbjct: 205 DEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             + +     + + + G  PDV  YN LI  CG CK+S   +A     +M    V+PN  
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLI--CGFCKHSKLVEAECYLHKMVNSGVEPNEF 322

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           TY  ++N    AG +     I+RD    G   D+F Y+ LI    N
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 122/311 (39%), Gaps = 49/311 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT-FFFRDQM 102
           YNT++       +          M+  GV+P    ++++I G  K   +Q+     RD M
Sbjct: 289 YNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAM 348

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSD---------------------------------- 128
              GF+PD   Y+ LI+  G C + D                                  
Sbjct: 349 -FKGFIPDEFTYSSLIN--GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQG 405

Query: 129 ---QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              QA+++ ++M ++   P+  TY  ++N     G L     I+ D  A G   D F + 
Sbjct: 406 LVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFN 465

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
            LI  +  +  R  D A +I++ +  S G +    + N   N +    K  L N+     
Sbjct: 466 TLIDGYCKQ--RNMDKAIEILDTM-LSHGITPDVITYNTLLNGLCKARK--LDNVVDTFK 520

Query: 246 VHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
                G    ++T Y++   + C + K  +AME   EM K    +PD+  +   I     
Sbjct: 521 AMLEKGCTPNIIT-YNILIESFCKDRKVSEAMELFKEM-KTRGLTPDIVTLCTLICGLCS 578

Query: 305 SGDIDNGHKVF 315
           +G++D  +++F
Sbjct: 579 NGELDKAYELF 589



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 9/183 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L   R+   + D +  M+  G  P    ++ LI    K  ++ +      +MK
Sbjct: 499 YNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK 558

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAG 160
             G  PD+     LI  CG C N   D+A  +F  + K+Y+   +   +  ++NA     
Sbjct: 559 TRGLTPDIVTLCTLI--CGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKL 616

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW-SSVE 219
            +     +   M  +    D + Y  +I ++  K    D   T ++E +  SKG   S  
Sbjct: 617 NVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYC-KTGNIDLAHTFLLENI--SKGLVPSFT 673

Query: 220 TSG 222
           T G
Sbjct: 674 TCG 676



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + ++I G  K +   + +   D+M   G  PD+  +N LI V  K  N  ++ ++F ++ 
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           K  V PN  T+   +      G +D    ++  + + G   D   Y  LI  
Sbjct: 244 KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICG 295


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           AEE   R    N   ++ ++       ++ L  DVY DM   G       +++LI    K
Sbjct: 314 AEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGK 373

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             + ++     +QMK     P    +N L+  C       +A+R++E+M      PN  T
Sbjct: 374 SGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTT 433

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  L++A +  G L  V A+ ++M   G       Y+ LI+A
Sbjct: 434 YNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISA 475



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 122/295 (41%), Gaps = 11/295 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + +++++  +Q+       + ++M   G++     F +L+   +K  + +        M+
Sbjct: 294 FTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQ 353

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G   +V  YN LI V GK    ++A+ + E+MK+  ++P  +T+  L+ AC  + Q  
Sbjct: 354 AAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQ 413

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIELVEQSKGWSSVETS 221
               +   M A+    +   Y  LI+AH+    +P+      ++++     KG    E S
Sbjct: 414 EALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQ-----KG---CERS 465

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                + +    K   + L    +   RG      +  Y+    ACA+    +    + E
Sbjct: 466 VITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFE 525

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL-YATLVE 335
            +++    PDV      I+ Y   G        FE+ I +    P  + Y T+++
Sbjct: 526 QMQRQGCRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTIID 580



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 65/162 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  R         +NT++ +  +  ++     VY+ M      P    +++LI    KG
Sbjct: 385 EQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISAHSKG 444

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L        +M   G    V  Y+ LIS C K      A+++FEEM+     PN  +Y
Sbjct: 445 GDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVISY 504

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+ ACA   Q +    +   M   G   D   Y  LI A+
Sbjct: 505 NSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAY 546



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++       ++     V + M  + +QP    F++L++     ++ Q+     
Sbjct: 360 NVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVY 419

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +QM A+   P+   YN LIS   K  +  + + +F+EM +   + +  TY  L++AC  A
Sbjct: 420 EQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKA 479

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+      +  +M   G   +   Y  LITA
Sbjct: 480 GEWKLALQLFEEMRGEGCVPNVISYNSLITA 510



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 51/108 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  ++    +   Y++++++      + L   ++++M  +G  P    ++SLI    +G
Sbjct: 455 KEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQG 514

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           ++ +      +QM+  G  PDV  Y  LI    +     +A+  FEEM
Sbjct: 515 AQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQWRRALAAFEEM 562



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           D   +  +IS C   ++  +A+ + EEM+   ++ N  T+  L+N C   GQ      + 
Sbjct: 290 DEFTFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVY 349

Query: 170 RDMTAAGAGLDKFCYAGLI 188
           RDM AAG   +   Y  LI
Sbjct: 350 RDMQAAGCPANVVTYNTLI 368


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    RN   N   Y++++  L    +    ++V+  M++ G++P    ++SLI G    
Sbjct: 360 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 419

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           + +       ++M A G LPD+  YN LI    K   + +A R+F +MK     P+  TY
Sbjct: 420 NGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY 479

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            CL+       ++D    +  DM       D   ++ L+  + N
Sbjct: 480 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 523



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 159/416 (38%), Gaps = 26/416 (6%)

Query: 26  SAGAEEYARR-NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           +A A +Y R      N   +  ++  L    R       +  M   G  P    ++ LI 
Sbjct: 110 TAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLIN 169

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEV 142
           G  K  ++   +    +MK +G  P+V  Y+ +I   G C+ +  D A ++F +M +   
Sbjct: 170 GFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIH--GFCRQTKVDTAYKLFRQMVENGC 227

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADD 200
            PN  TY  LL+     G +D  Y ++ +M   G   DKF Y  L+     T KI    D
Sbjct: 228 MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI----D 283

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY 260
            A K+ E  + S G    +    +    + G+ K    +     +   R       +  +
Sbjct: 284 MALKVFE--DNSNGDCPPDVVAYS--TLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTF 339

Query: 261 HVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
                   +   +Q  + +LE ++    +P+V      I     +G + +  +VF+  I 
Sbjct: 340 TALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIV 399

Query: 321 SEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKS 380
               P    Y +L+ G  F  T  G+  A   +  M +      P + +   L+    K+
Sbjct: 400 RGIEPNVVTYNSLIHG--FCMT-NGVDSALLLMEEMTATGCL--PDIITYNTLIDGLCKT 454

Query: 381 GGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLR 436
           G    AN ++  M+A+   P +        G    E      R+ +    +D++L+
Sbjct: 455 GRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE------RIDMARTLFDDMLK 504



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 119/317 (37%), Gaps = 48/317 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++       R  + R ++DDM+   V P    F +L+ G      + D     ++M 
Sbjct: 479 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 538

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+   PDV  Y  L+    K     +A R+ + M K   +PN  TY  L++A   AG+  
Sbjct: 539 ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPT 598

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD-DTATKIIELVEQSKGWSSVETSG 222
             Y ++ +M   G   +   Y  LI          D + A KI+E +E+ +         
Sbjct: 599 VAYRLLEEMVGNGVQPNVITYRSLIGGFCGT---GDLEEARKILERLERDE--------- 646

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
            N + +M                              Y V          + A   LLE 
Sbjct: 647 -NCKADMFA----------------------------YRVMMDGLCRTGRMSAALELLEA 677

Query: 283 LKKDRKSP--DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF-PPAELY-ATLVEGAM 338
           +K+    P  D+Y+ +  IR      ++    +V E+   S K  P AE Y A + E A 
Sbjct: 678 IKQSGTPPRHDIYVAL--IRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAR 735

Query: 339 FGYTPKGMQLAQDTLVN 355
            G   +   LA + L N
Sbjct: 736 EGRHEEANALADELLGN 752



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 160/393 (40%), Gaps = 30/393 (7%)

Query: 34  RRNYANNASEYNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++    N   YN ++          R + LL++    M   G+ P    + ++I G  + 
Sbjct: 154 KKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE----MKESGLAPNVVTYSTVIHGFCRQ 209

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
           +++   +    QM  NG +P++  YN L+S  G C+N   D+A  + +EM++  ++P+  
Sbjct: 210 TKVDTAYKLFRQMVENGCMPNLVTYNTLLS--GLCRNGLMDEAYELLDEMRERGLQPDKF 267

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           +Y  L+      G++D    +  D +      D   Y+ LI A   K  R D+ A K+ E
Sbjct: 268 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI-AGLCKAGRLDE-ACKLFE 325

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            + ++     V T     +    G   +E   +   E +  R      ++T   +    C
Sbjct: 326 KMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV--LETMEDR-NCTPNVITYSSLIDGLC 382

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              +   A E    M+ +  + P+V      I  +  +  +D+   + E+   +   P  
Sbjct: 383 KTGQVRDAQEVFKRMIVRGIE-PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 441

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
             Y TL++G    G  P+  +L  D    M ++  F +P + +   L+    K      A
Sbjct: 442 ITYNTLIDGLCKTGRAPEANRLFGD----MKAK--FCNPDVITYSCLIGGFCKLERIDMA 495

Query: 387 NYIWDLMQARKITPSLPA----VEAYYN-GLKD 414
             ++D M  + + P +      VE Y N GL D
Sbjct: 496 RTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD 528



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 150/382 (39%), Gaps = 20/382 (5%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ + +N   YN +  +L   RR      +  +    G+ P    +  +I G  K   L 
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 ++M+ +G +PD A+YN++I    K +N+ +A+  F  M   E + N  T+  ++
Sbjct: 77  KACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM---ECEKNVITWTIMI 133

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           +    A +L         M   G   +++ Y  LI     K+ +       + E+ E   
Sbjct: 134 DGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFC-KVHKVHRAYLLLKEMKESGL 192

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR---GGFLSRLLTVYHVAFHACAEL 270
             + V  S       + G  ++    + TA  + R+    G +  L+T   +    C   
Sbjct: 193 APNVVTYS-----TVIHGFCRQT--KVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 245

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
              +A E L EM ++  + PD +     +     +G ID   KVFED    +  P    Y
Sbjct: 246 LMDEAYELLDEMRERGLQ-PDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 304

Query: 331 ATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
           +TL+ G       K  +L +   +    R     P + +   L+    K      A  + 
Sbjct: 305 STLIAGLC-----KAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 359

Query: 391 DLMQARKITPSLPAVEAYYNGL 412
           + M+ R  TP++    +  +GL
Sbjct: 360 ETMEDRNCTPNVITYSSLIDGL 381



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L    R      ++ DM      P    +  LI G  K  R+       D M 
Sbjct: 444 YNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 503

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
               LPDV  ++ L+   G C     D A R+ EEM   +  P+  TY  L++     G+
Sbjct: 504 KQAVLPDVVTFSTLVE--GYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 561

Query: 162 LDPVYAIVRDMTAAG---------AGLDKFCYAG 186
           +     +++ M   G         A +D FC AG
Sbjct: 562 MVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG 595


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    RN   N   Y++++  L    +    ++V+  M++ G++P    ++SLI G    
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 300

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           + +       ++M A G LPD+  YN LI    K   + +A R+F +MK     P+  TY
Sbjct: 301 NGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY 360

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            CL+       ++D    +  DM       D   ++ L+  + N
Sbjct: 361 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 404



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 153/401 (38%), Gaps = 25/401 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +  ++  L    R       +  M   G  P    ++ LI G  K  ++   +   
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +MK +G  P+V  Y+ +I   G C+ +  D A ++F +M +    PN  TY  LL+   
Sbjct: 66  KEMKESGLAPNVVTYSTVIH--GFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKGW 215
             G +D  Y ++ +M   G   DKF Y  L+     T KI    D A K+ E  + S G 
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI----DMALKVFE--DNSNGD 177

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
              +    +    + G+ K    +     +   R       +  +        +   +Q 
Sbjct: 178 CPPDVVAYS--TLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQE 235

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            + +LE ++    +P+V      I     +G + +  +VF+  I     P    Y +L+ 
Sbjct: 236 AQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIH 295

Query: 336 GAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
           G  F  T  G+  A   +  M +      P + +   L+    K+G    AN ++  M+A
Sbjct: 296 G--FCMT-NGVDSALLLMEEMTATGCL--PDIITYNTLIDGLCKTGRAPEANRLFGDMKA 350

Query: 396 RKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDNLLR 436
           +   P +        G    E      R+ +    +D++L+
Sbjct: 351 KFCNPDVITYSCLIGGFCKLE------RIDMARTLFDDMLK 385



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 119/317 (37%), Gaps = 48/317 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++       R  + R ++DDM+   V P    F +L+ G      + D     ++M 
Sbjct: 360 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 419

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+   PDV  Y  L+    K     +A R+ + M K   +PN  TY  L++A   AG+  
Sbjct: 420 ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPT 479

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD-DTATKIIELVEQSKGWSSVETSG 222
             Y ++ +M   G   +   Y  LI          D + A K++E +E+ +         
Sbjct: 480 VAYKLLEEMVGNGVQPNVITYRSLIGGFCGT---GDLEEARKMLERLERDE--------- 527

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
            N + +M                              Y V          + A   LLE 
Sbjct: 528 -NCKADMFA----------------------------YRVMMDGLCRTGRMSAALELLEA 558

Query: 283 LKKDRKSP--DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF-PPAELY-ATLVEGAM 338
           +K+    P  D+Y+ +  IR      ++    +V E+   S K  P AE Y A + E A 
Sbjct: 559 IKQSGTPPRHDIYVAL--IRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAR 616

Query: 339 FGYTPKGMQLAQDTLVN 355
            G   +   LA + L N
Sbjct: 617 EGRHEEANALADELLGN 633



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 161/393 (40%), Gaps = 30/393 (7%)

Query: 34  RRNYANNASEYNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++    N   YN ++          R + LL+++ +     G+ P    + ++I G  + 
Sbjct: 35  KKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES----GLAPNVVTYSTVIHGFCRQ 90

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
           +++   +    QM  NG +P++  YN L+S  G C+N   D+A  + +EM++  ++P+  
Sbjct: 91  TKVDTAYKLFRQMVENGCMPNLVTYNTLLS--GLCRNGLMDEAYELLDEMRERGLQPDKF 148

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           +Y  L+      G++D    +  D +      D   Y+ LI A   K  R D+ A K+ E
Sbjct: 149 SYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI-AGLCKTGRLDE-ACKLFE 206

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            + ++     V T     +    G   +E   +   E +  R      ++T   +    C
Sbjct: 207 KMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV--LETMEDR-NCTPNVITYSSLIDGLC 263

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              +   A E    M+ +  + P+V      I  +  +  +D+   + E+   +   P  
Sbjct: 264 KTGQVRDAQEVFKRMIVRGIE-PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 322

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
             Y TL++G    G  P+  +L  D    M ++  F +P + +   L+    K      A
Sbjct: 323 ITYNTLIDGLCKTGRAPEANRLFGD----MKAK--FCNPDVITYSCLIGGFCKLERIDMA 376

Query: 387 NYIWDLMQARKITPSLPA----VEAYYN-GLKD 414
             ++D M  + + P +      VE Y N GL D
Sbjct: 377 RTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD 409



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/344 (20%), Positives = 131/344 (38%), Gaps = 45/344 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E      A N   Y+TV+     Q +      ++  M+ +G  P    +++L+ G  + 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             + + +   D+M+  G  PD   Y+ L++  G CK    D A+++FE+    +  P+  
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMA--GLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKI 205
            Y  L+      G+LD    +   M       D   +    TA  + + + D    A ++
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTF----TALMDGLCKGDRLQEAQQV 239

Query: 206 IELVEQSKGWSSVETSGNNAEN--------------EMMGVSKEELYNLPTAEYVH---R 248
           +E +E      +V T  +  +               + M V   E   +     +H    
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 299

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD- 307
             G  S LL +  +    C  L D+    TL++ L K  ++P+   +  +++    + D 
Sbjct: 300 TNGVDSALLLMEEMTATGC--LPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 357

Query: 308 ---------------IDNGHKVFEDYICSEKFPPAELYATLVEG 336
                          ID    +F+D +     P    ++TLVEG
Sbjct: 358 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 401


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 18/278 (6%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           +RFF    GA   AR         YN ++  +  +      R ++++M   G+ P    +
Sbjct: 247 KRFFKDMIGAG--ARPT----VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTY 300

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           +S+I G  K  RL DT  F ++MK     PDV  YN LI+   K       +  + EMK 
Sbjct: 301 NSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG 360

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
             +KPN  +Y  L++A    G +        DM   G   +++ Y  LI A+  KI    
Sbjct: 361 NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC-KIGNLS 419

Query: 200 DTATKIIELVEQSKGWSSVETSG---NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
           D      E+++    W+ V  +       + E M  ++E    + TA  +          
Sbjct: 420 DAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN-------- 471

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           L  Y+   H   + K++     LL  LK     PD+ +
Sbjct: 472 LASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLL 509



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 60/127 (47%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M+  GV+     + +LI G     R+++      +M   G +P++A YN LI    K 
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 485

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           KN D+A+ +  E+K   +KP+   Y   +    +  +++    ++ +M   G   +   Y
Sbjct: 486 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545

Query: 185 AGLITAH 191
             L+ A+
Sbjct: 546 TTLMDAY 552



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 51/122 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++  L    R     +++  M   GV P    +++LI G +K   +       
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 495

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +++K  G  PD+ +Y   I      +  + A  +  EMK+  +K N   Y  L++A   +
Sbjct: 496 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555

Query: 160 GQ 161
           G 
Sbjct: 556 GN 557



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 57/149 (38%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T+V +   +         Y DM   G+ P    + SLI    K   L D F   
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 425

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G   +V  Y  LI      +   +A  +F +M    V PN  +Y  L++    A
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 485

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +D    ++ ++   G   D   Y   I
Sbjct: 486 KNMDRALELLNELKGRGIKPDLLLYGTFI 514



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N  +P   V++ L SV       ++AI+ F +MK++ V P  ++   LL+  A  G+ D 
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 245

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
           V    +DM  AGA    F Y  +I
Sbjct: 246 VKRFFKDMIGAGARPTVFTYNIMI 269



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 50/124 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ +  ++  L    +      +++ M+  G+ P R  + SL+ G  K   + +    R
Sbjct: 612 NAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 671

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G   D+  Y  L+     C    +A    EEM    + P+    + +L      
Sbjct: 672 DKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 731

Query: 160 GQLD 163
           G +D
Sbjct: 732 GCID 735


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 132/304 (43%), Gaps = 11/304 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+V +LT Q+RF  +  +   +  +G++P   L +++I       ++ +      +MK
Sbjct: 98  YTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMK 157

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
             G  P  + YN LI   G      +++++ E M + E VKPN +TY  L+ A     +L
Sbjct: 158 EYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKL 217

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +  + ++  M A+G   D   Y  +  A+      A +  T+  E +     ++ V+ + 
Sbjct: 218 EEAWNVLHKMVASGIQPDVVTYNTMARAY------AQNGETEKAERLILKMQYNKVKPNE 271

Query: 223 NNAENEMMGVSKEELYNLPTA-EYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAMETLL 280
                 + G  KE   N+  A  +++R     +     V++       +  D   ++  L
Sbjct: 272 RTCGIIISGYCKEG--NMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEAL 329

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            ++++    PDV      +  +  +G +DN  ++F D + +   P    Y+ L +G +  
Sbjct: 330 TLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRA 389

Query: 341 YTPK 344
             P+
Sbjct: 390 GQPR 393



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 141/372 (37%), Gaps = 56/372 (15%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMML-------DGVQPTRDLFHSLIVGTMKGSRLQ 93
            S YNT++      + F ++   Y+ M L       + V+P    ++ LI       +L+
Sbjct: 165 TSTYNTLI------KGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLE 218

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           + +    +M A+G  PDV  YN +     +   +++A R+  +M+  +VKPN +T   ++
Sbjct: 219 EAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIII 278

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH-----TNKIPRA----DDTATK 204
           +     G +      +  M   G   +   +  LI  +     TN +  A    ++   K
Sbjct: 279 SGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIK 338

Query: 205 --IIELVEQSKGWSSVETSGNNAE--NEMMGVSKE---ELYNLPTAEYVHRRGGFLSRLL 257
             ++        WSS     N  E  N+M+    E     Y++    YV  R G      
Sbjct: 339 PDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYV--RAG------ 390

Query: 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
                           +  E+LL  + K     +V I    I  +  +G +D    + E 
Sbjct: 391 --------------QPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEK 436

Query: 318 YICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAG 377
                  P  + Y TL+ G  +G   +  + A++ L  M  R +   P M +  L+  A 
Sbjct: 437 MHEMGTSPNLKTYETLIWG--YGEAKQPWK-AEEILSTMEERGVV--PEMSTMQLVADAW 491

Query: 378 EKSGGYTTANYI 389
              G +  AN I
Sbjct: 492 RAIGLFKEANRI 503


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K +R++      ++M
Sbjct: 373 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 432

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI   GK K  D A  +F+E+K+     + + Y  ++     AG+L
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 492

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
           D    +  +M   G   D + Y  L++  A T  +  A  T  ++ E
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 2/167 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQ 93
           R     A  YN+++  L  + ++  + ++Y++M  +G   P    + +LI    K  R  
Sbjct: 188 RKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRD 247

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 ++MK NG  P   +Y  LI++  K  +   A+ +FEEM+    +P+  TY  L+
Sbjct: 248 SATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELI 307

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
                AG++D  Y    +M   G   D      +I     K  R DD
Sbjct: 308 RGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMIN-FLGKAGRLDD 353



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 83/180 (46%), Gaps = 2/180 (1%)

Query: 13  SVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           S+  ALG+  R+ +     +E      +++A  Y  ++  L    R     +++D+M   
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 505

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P    +++L+ G  +   L +      +M+ +G +PD+  YN +++   K     +A
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 565

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +   MK+  V+P+  +Y  +L A + AG  +    ++ +M   G   D   Y+ ++ A
Sbjct: 566 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEA 625



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++++     R      + ++M  +G+QPT  ++  LI    K   +       ++M+
Sbjct: 233 YSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMR 292

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  Y  LI   GK    D+A   F EM++   +P+      ++N    AG+LD
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLD 352

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
               + ++M           Y  +I A      RA +  +
Sbjct: 353 DAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPS 392



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 70/161 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +    + Y +++ +L   +R+ L  +++ ++  +    +  ++  +I    K 
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKA 489

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D     D+M   G  PDV  YN L+S   +    D+A+     M+++   P+  +Y
Sbjct: 490 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 549

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +LN  A  G       ++ +M  +    D   Y  ++ A
Sbjct: 550 NIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGA 590


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++++M+ +G+ P    F +LI G  K  R+        Q+ 
Sbjct: 209 YSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLL 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + GF PD+  YN LI   G CK  D  QA  + +EM   E+KP+  TY  L++     G 
Sbjct: 269 SQGFSPDLITYNTLIF--GLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L+  +   + M      LD   Y  LI+ 
Sbjct: 327 LETAFEYRKRMIKENIRLDDVAYTALISG 355



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 127/284 (44%), Gaps = 26/284 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +    L + V+D +   G++P+   F++L+ G ++   L + F  +  M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMH 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  D+A  +F EM    + PNG T+  L++     G+
Sbjct: 199 ASGVQPDVYTYSVLIN--GLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI-IELVEQSKGWSSV 218
           +D    I + + + G   D   Y  LI     K  + +A D   ++ ++ ++  K   + 
Sbjct: 257 VDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTT 316

Query: 219 ETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAFHA--CAELKDVQA 275
              G+  E            +L TA EY  R      RL  V + A  +  C E + V A
Sbjct: 317 LIDGSCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDA 365

Query: 276 METLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFED 317
            + L  ML    K PD   Y ++ N  C    GD+  G K+ ++
Sbjct: 366 EKMLRGMLSVGLK-PDNGTYTMIINEFC--KKGDVKTGSKLLKE 406



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + ++ +   YNT++  L  +      RD+ D+M +  ++P +  + +LI G+ K   L+ 
Sbjct: 270 QGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLET 329

Query: 95  TFFFRDQM-KANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            F +R +M K N  L DVA Y  LIS +C + ++ D A ++   M    +KP+  TY  +
Sbjct: 330 AFEYRKRMIKENIRLDDVA-YTALISGLCQEGRSVD-AEKMLRGMLSVGLKPDNGTYTMI 387

Query: 153 LNACAAAGQLDPVYAIVRDMTAAG 176
           +N     G +     ++++M   G
Sbjct: 388 INEFCKKGDVKTGSKLLKEMXRDG 411



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   + T++       R  L  ++Y  ++  G  P    +++LI G  K   L+      
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLI 299

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M      PD   Y  LI   G CK  D   A    + M K  ++ +   Y  L++   
Sbjct: 300 DEMSMKELKPDKITYTTLID--GSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G+      ++R M + G   D   Y  +I     K
Sbjct: 358 QEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKK 394


>gi|302809414|ref|XP_002986400.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
 gi|300145936|gb|EFJ12609.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
          Length = 318

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR   +N S YN ++ +L           V+     D + P    +H ++ G  K ++ +
Sbjct: 2   RRYRISNVSSYNIMIKNLVKDSELTKSLKVFHMFETDQLSPDVGTYHYIVSGLCKANKTK 61

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
               + + MK  G LPD   Y+ +I   G+    ++A+++FEEMK+  V+ + + +  LL
Sbjct: 62  MAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLL 121

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            A   + +   VY I R+M   G   D + Y
Sbjct: 122 RAVGTSYKPSLVYNIFREMQYFGHVPDIWSY 152



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 50/112 (44%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++ +I   +K S L  +       + +   PDV  Y+Y++S   K   +  A   FE MK
Sbjct: 12  YNIMIKNLVKDSELTKSLKVFHMFETDQLSPDVGTYHYIVSGLCKANKTKMAAMYFEGMK 71

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           K  + P+  TY  +++    AG+++    +  +M      LD   +  L+ A
Sbjct: 72  KLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRA 123



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           VY +M  DG++P    + ++I+      R +  + F   +   G   +V  +N L+    
Sbjct: 171 VYREMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLT 230

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
           K    + A  ++ +MK    KP+  TY  LL    A      VY I RD
Sbjct: 231 KEDVIEVAFSVYNDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRD 279



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 70/159 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+N   +   +N+++ ++ +  +  L+ +++ +M   G  P    ++ L  G  + 
Sbjct: 103 EEMKRKNVRLDTRVFNSLLRAVGTSYKPSLVYNIFREMQYFGHVPDIWSYNLLFYGLARR 162

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +       +MK +G  PD+  Y  +I   G    +  A    + + +  V+ N +T+
Sbjct: 163 GRRKRLRKVYREMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTW 222

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             LL        ++  +++  DM A G   D   Y+ L+
Sbjct: 223 NALLRGLTKEDVIEVAFSVYNDMKARGFKPDNTTYSLLL 261


>gi|414872586|tpg|DAA51143.1| TPA: empty pericarp4 [Zea mays]
          Length = 595

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 10/148 (6%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           D+ LD V     +F++L+ G +   R +D F    QM+  G  P+   Y  LI   G   
Sbjct: 219 DVALDVV-----VFNTLLAGFVAEGRFEDAFELAGQMEQRGCPPNAVSYTTLIQGLGARG 273

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
             D+A+R+F EM++    P+  TY  L+N    AG++   Y  +  M+  G  +D   Y 
Sbjct: 274 RVDEAMRVFVEMRRKGCAPDAVTYGTLVNTFCKAGKISQGYEFLDAMSRDGLRVDAAVYH 333

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSK 213
           G   AH  K     +   + +EL+E+ +
Sbjct: 334 GFFVAHEKK-----EQLEECLELMERMR 356



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 11/166 (6%)

Query: 16  GALGR-----RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           GA GR     R FV      E  R+  A +A  Y T+V +     +     +  D M  D
Sbjct: 270 GARGRVDEAMRVFV------EMRRKGCAPDAVTYGTLVNTFCKAGKISQGYEFLDAMSRD 323

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++    ++H   V   K  +L++     ++M+     PD+ +YN +I +  +   + QA
Sbjct: 324 GLRVDAAVYHGFFVAHEKKEQLEECLELMERMRECRCPPDLKIYNVVIRLACRLGETKQA 383

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + ++ EM+   + P   T+  +++     G L    +  +DM   G
Sbjct: 384 MTLWNEMESAGLSPVVDTFAIVVSGLVGQGLLIEACSYFKDMVGRG 429


>gi|302813971|ref|XP_002988670.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
 gi|300143491|gb|EFJ10181.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
          Length = 318

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR   +N S YN ++ +L           V+     D + P    +H ++ G  K ++ +
Sbjct: 2   RRYRISNVSSYNIMIKNLVKDSELTKSLKVFHMFEADQLSPDVGTYHYIVSGLCKANKTK 61

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
               + + MK  G LPD   Y+ +I   G+    ++A+++FEEMK+  V+ + + +  LL
Sbjct: 62  MAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLL 121

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            A   + +   VY I R+M   G   D + Y
Sbjct: 122 RAVGTSYKPSLVYNIFREMQYFGQVPDIWSY 152



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++ +I   +K S L  +       +A+   PDV  Y+Y++S   K   +  A   FE MK
Sbjct: 12  YNIMIKNLVKDSELTKSLKVFHMFEADQLSPDVGTYHYIVSGLCKANKTKMAAMYFEGMK 71

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           K  + P+  TY  +++    AG+++    +  +M      LD   +  L+ A
Sbjct: 72  KLGLLPDTMTYSTMIDCYGRAGKVNRALQLFEEMKRKNVRLDTRVFNSLLRA 123



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 70/159 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+N   +   +N+++ ++ +  +  L+ +++ +M   G  P    ++ L  G  + 
Sbjct: 103 EEMKRKNVRLDTRVFNSLLRAVGTSYKPSLVYNIFREMQYFGQVPDIWSYNLLFYGLARR 162

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +       +MK +G  PD+  Y  +I   G    +  A    + + +  V+ N +T+
Sbjct: 163 GRRKRLRKVYREMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTW 222

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             LL        ++  +++  DM A G   D   Y+ L+
Sbjct: 223 NALLRGLTKEDVIEVAFSVYNDMKARGFKPDNTTYSLLL 261



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           VY +M  DG++P    + ++I+      R +  + F   +   G   +V  +N L+    
Sbjct: 171 VYREMKRDGLKPDIYTYTAIILCLGNAGRTKSAYNFMQGLLRKGVEVNVKTWNALLRGLT 230

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
           K    + A  ++ +MK    KP+  TY  LL    A      VY I RD
Sbjct: 231 KEDVIEVAFSVYNDMKARGFKPDNTTYSLLLENSIALRDAKKVYRIQRD 279


>gi|298709629|emb|CBJ31438.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 762

 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ V+T+    +++     + DDM   GV+P    F++ I       + Q       +MK
Sbjct: 330 YSAVITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCGVARQWQRAVGLLGEMK 389

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G    ++ YN  I  C       +A  +  EM+   V+PN  TY+ ++ AC  AG  +
Sbjct: 390 GGGLELGLSSYNAAILACATSARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWE 449

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                +R+MTA G   +   Y  +ITA
Sbjct: 450 QSLVHLREMTAQGLAPNSPIYTAVITA 476



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S YN  + +  +  R      +  +M   GV+P    +  +I    K    + +     +
Sbjct: 398 SSYNAAILACATSARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWEQSLVHLRE 457

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M A G  P+  +Y  +I+ CG  K  ++A+ I  EM    VK +   Y   L+AC  A Q
Sbjct: 458 MTAQGLAPNSPIYTAVITACGHAKEWEKALEILAEMPAAGVKASVYHYNTALDACDRAAQ 517

Query: 162 LDPVYAIVRDM 172
            +    ++ DM
Sbjct: 518 GEAAVVLLHDM 528



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N  + S    R++     +  +M   G++     +++ I+     +R  +     
Sbjct: 361 NCHNFNAAIASCGVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGVEASALL 420

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+A G  P+ A Y  +I+ CGK    +Q++    EM    + PN   Y  ++ AC  A
Sbjct: 421 GEMRAAGVEPNAATYLPVITACGKAGMWEQSLVHLREMTAQGLAPNSPIYTAVITACGHA 480

Query: 160 GQLDPVYAIVRDMTAAG 176
            + +    I+ +M AAG
Sbjct: 481 KEWEKALEILAEMPAAG 497



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           Y   + S    +++     + D+M L  G+ P  + +   I      S          QM
Sbjct: 259 YKAAMQSCVRNKQWERATSLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQM 318

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           + NG  PD   Y+ +I+  GK K  ++++R+ ++M++  V+PN   +   + +C  A Q 
Sbjct: 319 RQNGLQPDPKTYSAVITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCGVARQW 378

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                ++ +M   G  L    Y   I A
Sbjct: 379 QRAVGLLGEMKGGGLELGLSSYNAAILA 406



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 161/385 (41%), Gaps = 32/385 (8%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M  +G+QP    + ++I  + K  + +++    D M+  G  P+   +N  I+ CG  + 
Sbjct: 318 MRQNGLQPDPKTYSAVITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCGVARQ 377

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A+ +  EMK   ++    +Y   + ACA + +     A++ +M AAG   +   Y  
Sbjct: 378 WQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGVEASALLGEMRAAGVEPNAATYLP 437

Query: 187 LITAHTNKIPRADDTATKIIELVEQ-----SKGWSSVETSGNNAENEMMGVSKEELYNLP 241
           +ITA   K    + +   + E+  Q     S  +++V T+  +A+     +  E L  +P
Sbjct: 438 VITA-CGKAGMWEQSLVHLREMTAQGLAPNSPIYTAVITACGHAKEWEKAL--EILAEMP 494

Query: 242 TAEYVHRRGGFLSRLLTVYH--VAFHACAELKDVQAMETLL-EMLKKDRKSPDVYIVMQN 298
            A       G  +   +VYH   A  AC      +A   LL +M      SP+       
Sbjct: 495 AA-------GVKA---SVYHYNTALDACDRAAQGEAAVVLLHDMDGPPGVSPNPSSYQSA 544

Query: 299 IRCYLHSGDIDNGHKVFEDYICS-----EKFPPAELYATLVEGAMFGYTPKG--MQLAQD 351
           +      G +D   ++ E+   +     E  P ++LYA+ ++ A     P G   + A++
Sbjct: 545 MSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQ-ACVSSPPDGSNARKAKE 603

Query: 352 TLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            L       I L+ R  +  ++ AA  K+G    A      M+   +TP++ +       
Sbjct: 604 LLEEARGAGIALNWRSYNCAIIAAA--KAGEVDEALARLAEMKDAGLTPNVMSYSWILPA 661

Query: 412 LKDREVPADDPRLVVVSRAYDNLLR 436
           L  RE+  +   LV   + Y  LLR
Sbjct: 662 LASRELWEESLALVEEIKGY-GLLR 685



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++  I+   K   + +      +MK  G  P+V  Y++++      +  ++++ + EE+K
Sbjct: 620 YNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMSYSWILPALASRELWEESLALVEEIK 679

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
            Y +      Y  ++ A +AAG+ + V  ++ DM AAG  + K   AG + + T      
Sbjct: 680 GYGLLRTPFAYSVVVAAHSAAGRWEEVCGVLEDMIAAGVAM-KAGVAGKVASETMT---G 735

Query: 199 DDTATKIIELVEQSKGWSSVETSGNNA 225
            + A + +EL+E+      VE  G++A
Sbjct: 736 REGAERALELLER-----GVEAPGSDA 757



 Score = 45.1 bits (105), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y + ++ +   RR+    D+   M   G+QP      S I       R ++     ++ +
Sbjct: 34  YASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAIKACGSKKRWREALELLERRR 93

Query: 104 AN---GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            +   G   D    +  I  CG    + + + + EE+K     P+  +Y   ++AC  +G
Sbjct: 94  EDLGEGSPVDEYSLSAAIYACGNSGETGKVLELLEELKVGGKTPHPFSYTAAISACGDSG 153

Query: 161 QLDPVYAIVRDMTAAGAGLDKF----CYAGLITA 190
             D V  +  DM  A    D F    C    ITA
Sbjct: 154 MGDKVMQLFEDMRQARVRTDGFIDVYCVKTTITA 187



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 18/249 (7%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL------FHSLIVGTMKGSRLQD---T 95
            T +T+L    ++     +Y +M LD +    D         +L   ++   R  D   +
Sbjct: 182 KTTITALAKSGKWKQALKIYLEM-LDALPANSDAPEANLNLDALRDASLACGRAGDWKAS 240

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLN 154
               D+M+A    P+   Y   +  C + K  ++A  + +EM   Y + P+ +TY   ++
Sbjct: 241 LKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEMTLTYGMVPDLETYQVAIS 300

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           A   A        ++R M   G   D   Y+ +ITA + K  + +++   + ++ E    
Sbjct: 301 AAGCASLWPKATKMLRQMRQNGLQPDPKTYSAVITA-SGKAKKWEESLRLLDDMRE---- 355

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA-ELKDV 273
              VE + +N    +        +          +GG L   L+ Y+ A  ACA   + V
Sbjct: 356 -VGVEPNCHNFNAAIASCGVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGV 414

Query: 274 QAMETLLEM 282
           +A   L EM
Sbjct: 415 EASALLGEM 423



 Score = 42.0 bits (97), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-----VQPTRDLFHSLIVGTMK----GS 90
           N S Y + +++  S+ R  L  ++ +++         + P+  L+ S +   +     GS
Sbjct: 537 NPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPDGS 596

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             +      ++ +  G   +   YN  I    K    D+A+    EMK   + PN  +Y 
Sbjct: 597 NARKAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMSYS 656

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            +L A A+    +   A+V ++   G     F Y+ ++ AH+
Sbjct: 657 WILPALASRELWEESLALVEEIKGYGLLRTPFAYSVVVAAHS 698


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 8/206 (3%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           ++R  K   G L R+FF    GA    R  +      YN ++  L  +    + R ++  
Sbjct: 28  LHRLSKVGRGDLSRKFF-KDMGAAGIKRSVFT-----YNIMIDYLCKEGDLEMARSLFTQ 81

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G  P    ++SLI G  K   L +     +QMK     PDV  YN LI+   K + 
Sbjct: 82  MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 141

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A     EMK   +KPN  TY   ++A    G L        DM       ++F Y  
Sbjct: 142 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 201

Query: 187 LITAHTNKIPRADDTATKIIELVEQS 212
           LI A+      A+  A K++E + Q+
Sbjct: 202 LIDANCKAGNLAE--ALKLVEEILQA 225



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M      P    +++LI    K  R+   F F  +MKANG  P+V  Y+  I    
Sbjct: 113 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 172

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K     +AI+ F +M++  + PN  TY  L++A   AG L     +V ++  AG  L+  
Sbjct: 173 KEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV 232

Query: 183 CYAGLI 188
            Y  L+
Sbjct: 233 TYTALL 238



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++  L+   R  L R  + DM   G++ +   ++ +I    K   L+       QMK 
Sbjct: 25  NALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKE 84

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            GF PD+  YN LI   GK    D+ I IFE+MK  +  P+  TY  L+N      ++  
Sbjct: 85  AGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPK 144

Query: 165 VYAIVRDMTAAGAG---------LDKFCYAGLI 188
            +  + +M A G           +D FC  G++
Sbjct: 145 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 177



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           +V  L     F + + ++D+M+  G+ P +  + +LI G MK   LQ+    RD+M   G
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 424

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
              D+  Y  LI          +A  + +EM    V P+   Y+CL+    A G++D   
Sbjct: 425 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 484

Query: 167 AIVRDMTAAG 176
            +  +M   G
Sbjct: 485 ELQNEMAKRG 494



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 60/145 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++       R     +   +M  +G++P    + + I    K   LQ+   F   M+
Sbjct: 129 YNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMR 188

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P+   Y  LI    K  N  +A+++ EE+ +  +K N  TY  LL+     G++ 
Sbjct: 189 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 248

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               + R M  AG   ++  Y  L+
Sbjct: 249 EAEEVFRAMLNAGVAPNQETYTALV 273



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     N   Y  ++  L  + R     +V+  M+  GV P ++ + +L+ G +K 
Sbjct: 220 EEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKA 279

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             ++       +MK     PD+ +Y  ++   G C  S  ++A  +  E+K+  +  N  
Sbjct: 280 KEMEYAKDILKEMKEKCIKPDLLLYGTILW--GLCNESRLEEAKLLIGEIKESGINTNAV 337

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            Y  L++A   +GQ      ++ +M     GL K
Sbjct: 338 IYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCK 371



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   Y  +V      +     +D+  +M    ++P   L+ +++ G    SRL++   
Sbjct: 263 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKL 322

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM----------KKYEVK---- 143
              ++K +G   +  +Y  L+    K   + +A+ + EEM            +EV     
Sbjct: 323 LIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLF 382

Query: 144 ---------PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHT 192
                    P+   Y  L++     G L     +   M   G  LD   Y  LI   +H+
Sbjct: 383 DEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHS 442

Query: 193 NKIPRADDTATKII 206
            ++ +A +   ++I
Sbjct: 443 GQVQKARNLLDEMI 456


>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++ +M   G       + SLI    K  RL+D      +MK  G  P+V +YN L+ + 
Sbjct: 421 DIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMH 480

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK KN  Q  ++++EMK+ ++ P+  +Y  +++A   A + +      R+    G  +DK
Sbjct: 481 GKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDK 540

Query: 182 FCYAGLITAHTNKIPRADD 200
             + G++    +K  R D+
Sbjct: 541 -AFGGIMVGVFSKTSRVDE 558


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 136/335 (40%), Gaps = 35/335 (10%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R     N   +NT++  L  Q +      V+ +M    + P    +  LI G  K  
Sbjct: 140 EMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAG 199

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L + +    +M  +G  P    YN +I         D+A+ +F+ M+    +P+  T+ 
Sbjct: 200 KLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFN 259

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE--- 207
            L++A    G+LD  + +++ MT  G   D   Y+ LI+   + I R DD A  ++E   
Sbjct: 260 ILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS-IARVDD-ARHLLEDMV 317

Query: 208 -------LVEQSKGWSSVETSGNNAE-----NEMMGVSKE-ELYNLPTAEYVHRRGG--- 251
                  +V Q+     +  +G   E     + M+   +  ++    T  + H R G   
Sbjct: 318 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377

Query: 252 --------FLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
                    ++R L    V + A     C   +  +A     +M K    +P+++     
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSSGCAPNLFTYTAL 436

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           I  +  +G +D G K+F + +C+   P   +Y TL
Sbjct: 437 ILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 159/375 (42%), Gaps = 23/375 (6%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR    +   YN ++ +   +       D+   M+ DG  P    +++++ G  K SR++
Sbjct: 73  RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVE 132

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVC 151
           +     ++M+  G  P+   +N +I   G C+ S  DQA ++F EM+  ++ P+  +Y  
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTII--LGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGI 190

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           L++  A AG+L+  Y + + M  +G       Y  +I  H   +    D A ++ + + +
Sbjct: 191 LIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI--HGMCLAYTLDEALELFKSM-R 247

Query: 212 SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR---GGFLSRLLTVYHVAFHACA 268
           SKG      + N   +      K     L  A  + +R    G +  ++T Y        
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGK-----LDEAFRLLKRMTDDGHVPDVVT-YSTLISGLC 301

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
            +  V     LLE + K +  P V      I     +G I    +V +  + S + P   
Sbjct: 302 SIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVV 361

Query: 329 LYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            Y TLV G    G T +    A++ L +M +R   L+P + +   LV+   K+     A 
Sbjct: 362 TYNTLVHGHCRAGQTER----ARELLSDMVARG--LAPNVVTYTALVSGLCKANRLPEAC 415

Query: 388 YIWDLMQARKITPSL 402
            ++  M++    P+L
Sbjct: 416 GVFAQMKSSGCAPNL 430



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 1/169 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  +R         NT++  L    R    R+V D M+  G  P    +++L+ G  + 
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 373

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +        M A G  P+V  Y  L+S   K     +A  +F +MK     PN  TY
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
             L+    +AGQ+D    +  +M  AG   D   Y G + A   K  R+
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY-GTLAAELCKSGRS 481



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 149/373 (39%), Gaps = 19/373 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L     F   R+++ DM   G  P+   ++ +I  + K   L++      +M 
Sbjct: 48  YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI 107

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            +G +PDV  YN ++   G CK+S  ++A+ +F EM++    PN +++  ++       +
Sbjct: 108 EDGHVPDVVTYNTVMD--GLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 165

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           +D    +  +M A     D + Y  LI   A   K+    + A K+ + +  S    S  
Sbjct: 166 IDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKL----NEAYKLFQRMLDSGITPSAV 221

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T         +  + +E   L   + +  +G   SR    +++   A  +   +     L
Sbjct: 222 TYNVVIHGMCLAYTLDEALEL--FKSMRSKGCRPSRF--TFNILIDAHCKRGKLDEAFRL 277

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
           L+ +  D   PDV      I        +D+   + ED +  +  P      TL+ G   
Sbjct: 278 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
               K  +   D +V+        SP + +   LV    ++G    A  +   M AR + 
Sbjct: 338 AGRIKEAREVLDAMVSSGQ-----SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLA 392

Query: 400 PSLPAVEAYYNGL 412
           P++    A  +GL
Sbjct: 393 PNVVTYTALVSGL 405



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V       +    R++  DM+  G+ P    + +L+ G  K +RL +      QMK
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G  P++  Y  LI         D  +++F EM    + P+   Y  L      +G+  
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 164 PVYAIVRD 171
               I+R+
Sbjct: 483 RALEILRE 490



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 27  AGAEEYAR--------RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           AG  E AR        R  A N   Y  +V+ L    R      V+  M   G  P    
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 432

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +LI+G     ++        +M   G  PD  VY  L +   K   S +A+ I  E +
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492

Query: 139 KY--EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +         + Y   ++    AG+++     VRDM   G
Sbjct: 493 ESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGG 532


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 18/285 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +V   M   G++P   L++S+I G  K +++   F   D+M   G  P    +N LI  C
Sbjct: 387 NVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCC 446

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ---LDPVYAIVRDMTAAGAG 178
            +  N DQA R+ E+MK+ +VKP+  TY  L     +  Q   L+  + +   +  +   
Sbjct: 447 VRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDF 506

Query: 179 L-DKFCYAGLITAHTN--KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE 235
             D+  +  L+ A  N  ++ RA       +EL +Q K  S  +   +N ++    +S E
Sbjct: 507 TPDEILFNVLLDACINCKQLDRA-------VELFKQLKPQSQPQIQVSNTDDADNSLSLE 559

Query: 236 E----LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD 291
           +      N P A        F+      ++     CA+ K +Q    +  ++K     P+
Sbjct: 560 DSPDSAKNAP-AVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPN 618

Query: 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                  I   +    +++  ++  +   +   P    Y+TL++G
Sbjct: 619 DVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKG 663



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            Y+T++     ++       + +DM  + +     L++SL+ G  K + ++        M+
Sbjct: 882  YSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNME 941

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 P    Y+ LI + GK +N  +A+ + EEMKK  ++P    Y CLL  C  + QL 
Sbjct: 942  ILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLK 1001

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                +  DM   G   D+  Y  +I  
Sbjct: 1002 TAEQLFHDMRIQGIRGDQLTYQTMING 1028



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 154/380 (40%), Gaps = 40/380 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++     +++  L  ++++ M +  ++P    ++SLI   ++ +RL   +    +M+
Sbjct: 587 FNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQ 646

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQ-----------AIRIFEEMKKYE--VKPNGQTYV 150
            N  +PD   Y+ LI    + +N  Q           A  + E+MK+    VKP+   Y 
Sbjct: 647 QNNIVPDNFTYSTLIKGI-RAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYN 705

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIE- 207
           CL++AC     ++   A+ ++M  +        Y  LI A+   N++  A     K+ + 
Sbjct: 706 CLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDN 765

Query: 208 -LVEQSKGWSSVETS---GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA 263
            L+  S  +  +  +    N  E  M      E++     + V       + L+  +  +
Sbjct: 766 CLIPNSVTYGCLIDACVKNNQIERAM------EVFETMKRDGVQLNTIIFTTLIKGFAKS 819

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI--CS 321
           F      K  QA+E    M   D+  P+       I C +    I    ++FE+     S
Sbjct: 820 F------KLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPIS 873

Query: 322 EKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
              P    Y+T+++G       K +Q A   L +M   NI     + + LL      K+ 
Sbjct: 874 HTKPDLITYSTMIKGFC---REKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCC--KAN 928

Query: 382 GYTTANYIWDLMQARKITPS 401
               A  ++  M+  KI PS
Sbjct: 929 EIEMALKVYKNMEILKIKPS 948



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N S+ N +   +  ++ F LL  +       GV+P   L++ LI   ++   +     
Sbjct: 666 AENQSQ-NGISNPMDLEKAFALLEQMKQSN--GGVKPDEILYNCLIDACVRFHDVNRAVA 722

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M+ +   P    Y  LI   G     D A  +F++MK   + PN  TY CL++AC 
Sbjct: 723 VFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACV 782

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              Q++    +   M   G  L+   +  LI
Sbjct: 783 KNNQIERAMEVFETMKRDGVQLNTIIFTTLI 813



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 7/168 (4%)

Query: 39  NNASEYNTV---VTSLTSQRRFFLLRDVYDDMM-LDGVQPT-RDL--FHSLIVGTMKGSR 91
           N+ + Y TV   + SL     F     +Y+ +  L   QP   D+  F  +I G  +  R
Sbjct: 322 NDPTYYQTVNQMLDSLLKAELFEEAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQR 381

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           L         MK  G  PD  +YN +I  C K     +A  +++EM    V P   T+  
Sbjct: 382 LPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNS 441

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
           L++ C  +G  D  + ++  M       D + Y+ L     ++  R D
Sbjct: 442 LIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQD 489



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 12/131 (9%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           ++P    F+++I G  +  +LQ  F   + MK     P+   YN LI  C +C   + A 
Sbjct: 580 MRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAW 639

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQ----------LDPVYAIVRDMTAAGAGL-- 179
           ++  EM++  + P+  TY  L+    A  Q          L+  +A++  M  +  G+  
Sbjct: 640 QLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKP 699

Query: 180 DKFCYAGLITA 190
           D+  Y  LI A
Sbjct: 700 DEILYNCLIDA 710



 Score = 50.4 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 89/207 (42%), Gaps = 11/207 (5%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN+++          +   VY +M +  ++P+   +  LI    K   L       ++MK
Sbjct: 917  YNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMK 976

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             +G  P + VY  L+  C K +    A ++F +M+   ++ +  TY  ++N C  + + D
Sbjct: 977  KDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGCLYSQKFD 1036

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITA----HTNKIPRADDTATKIIELVEQSKGWSSVE 219
             +  +++D + +   L       ++T     +T+      +    ++  ++Q + +S  +
Sbjct: 1037 SILILLKDASDSKVQLPHELSQNILTELNKWNTDNHQMKQEITQHVLVYLDQKENYSFNQ 1096

Query: 220  TS-------GNNAENEMMGVSKEELYN 239
             +        NN+ N   G ++ + +N
Sbjct: 1097 NNFQKHFNHQNNSYNHGFGRNQNKTFN 1123



 Score = 45.8 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 62  DVYDDMM--LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           +++++M   +   +P    + ++I G  +   +Q      + M+ N  + D  +YN L+ 
Sbjct: 863 EIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLD 922

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            C K    + A+++++ M+  ++KP+  TY  L+        L     ++ +M   G
Sbjct: 923 GCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDG 979


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 45/309 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R     + + YN ++ +            + + M  + +QP+   F  +I G    
Sbjct: 498 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 557

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      D M+ +G +P V  YN LI    +     +A+ + ++M    + PN  TY
Sbjct: 558 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 617

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++   AA+G +   +     +  +G  LD + Y  L+ A                   
Sbjct: 618 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK---------------- 661

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF--LSRLLTVYHVAFHAC 267
                      SG                 + +A  V R   F  + R   +Y++     
Sbjct: 662 -----------SGR----------------MQSALAVTREMSFQKIPRNTFIYNILIDGW 694

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
           A   DV   E L++ +K+D   P+++     I     +GD+    KV E+ +     P  
Sbjct: 695 ARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNV 754

Query: 328 ELYATLVEG 336
           + Y TL++G
Sbjct: 755 KTYTTLIKG 763



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 141/354 (39%), Gaps = 19/354 (5%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  +M  DG+    D++HS++ G              +++K  GF P +  Y  L+++ 
Sbjct: 390 ELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLY 449

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A+ I +EM+   +K N +TY  L+N           +AI  +M  +G   D+
Sbjct: 450 VKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDR 509

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM---GVSKEELY 238
             Y  LI A         D A  I+E +++ +   S     N A   ++    V+ +   
Sbjct: 510 AIYNLLIEAFCKM--GNMDRAICILEKMQKERMQPS-----NRAFRPIIEGYAVAGDMKS 562

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
            L T + + RR G +  ++T Y+   H       VQ   ++L+ +     +P+ +     
Sbjct: 563 ALDTLDLM-RRSGCVPTVMT-YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII 620

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQLAQDTLVNMN 357
           +R Y  SGDI    + F     S       +Y TL+      G     + + ++      
Sbjct: 621 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 680

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            RN F+        +L+    + G    A  +   M+   + P++    +Y N 
Sbjct: 681 PRNTFIYN------ILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINA 728



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 8/211 (3%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A   E + +    N   YN ++     +   +   D+   M  DGV P    + S I   
Sbjct: 670 AVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC 729

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q      ++M   G  P+V  Y  LI    +    D+A++ FEEMK   +KP+ 
Sbjct: 730 CKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDE 789

Query: 147 QTYVCLLNACAAAGQL------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +Y CL+ +  +   +        + ++ R+M+     +D    A   +   +KI R   
Sbjct: 790 ASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVD-LRTAVHWSRWLHKIERTGG 848

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMG 231
             T+ ++ +     W+S+E  G  + +  MG
Sbjct: 849 ALTEALQRI-FPPDWNSLEFLGEPSSSISMG 878



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +     R      V  +M    +     +++ LI G  +   + +      QMK
Sbjct: 652 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 711

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P++  Y   I+ C K  +  +A ++ EEM    +KPN +TY  L+   A     D
Sbjct: 712 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 771

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                  +M  AG   D+  Y  L+T+
Sbjct: 772 RALKCFEEMKLAGLKPDEASYHCLVTS 798



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 59/132 (44%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  +++M   G++P   +F SL+        ++      ++MK+ G    +  Y+ LIS 
Sbjct: 284 RATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISG 343

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  +S  A  +F+E K      NG  Y  +++A   +G ++    +VR+M   G    
Sbjct: 344 FAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAP 403

Query: 181 KFCYAGLITAHT 192
              Y  ++  +T
Sbjct: 404 IDVYHSMMHGYT 415


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 133/311 (42%), Gaps = 14/311 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E++ +     A  YNT++ +    R F  +  +   M  DGV   +  +  LI  ++K 
Sbjct: 229 KEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKN 288

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ D     D+M+  G   D+ VY  LIS   +  N  +A  +F+E+ +  + P+  TY
Sbjct: 289 GKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTY 348

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++     G++     ++ +M + G  + +  +  LI  +  K     D A+ I +++
Sbjct: 349 GALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRK--GMIDEASMIYDVM 406

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR--RGGFLSRLLTVYHVAFHA- 266
           E+    + V T    A       ++ + Y+    +++ R   GG   RL TV +      
Sbjct: 407 EKKGFQADVFTCNTIAS----CFNRLKRYD-EAKQWLFRMMEGGV--RLSTVSYTNLIDV 459

Query: 267 -CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C E    +A    +EM  K+ + P+       I  Y   G +    K++ +   +   P
Sbjct: 460 YCKEGNVEEAKRLFVEMSSKEVQ-PNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDP 518

Query: 326 PAELYATLVEG 336
            +  Y +L+ G
Sbjct: 519 DSYTYTSLIHG 529



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 4/130 (3%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + ++ +M    VQP    ++ +I    K  ++++       MKANG  PD   Y  LI  
Sbjct: 470 KRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIH- 528

Query: 121 CGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G+C   N D+A+R+F EM    +  N  TY  +++  + AG+ D  + +  ++   G  
Sbjct: 529 -GECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYT 587

Query: 179 LDKFCYAGLI 188
           +D   Y  LI
Sbjct: 588 IDNKVYTALI 597



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 6/137 (4%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
            +R FV      E + +    NA  YN ++ +   Q +    R ++ +M  +G+ P    
Sbjct: 469 AKRLFV------EMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYT 522

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + SLI G      + +      +M   G   +   Y  +IS   K   SD+A  +++E+K
Sbjct: 523 YTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIK 582

Query: 139 KYEVKPNGQTYVCLLNA 155
           +     + + Y  L+ +
Sbjct: 583 RKGYTIDNKVYTALIGS 599



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           +RR  L  + +  M+  GV+ T      ++ G  +   ++ +     +    G  P+   
Sbjct: 183 RRRIDLCLEFFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYT 242

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           YN +I+   K ++     +I + MKK  V  N  TY  L+      G+++ V  +  +M 
Sbjct: 243 YNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMR 302

Query: 174 AAGAGLDKFCYAGLITAHTNK--IPRA 198
             G   D   Y  LI+ +  K  I RA
Sbjct: 303 ERGIESDIHVYTSLISWNCRKGNIKRA 329


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 30/287 (10%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK---ANGFLPDVAVYNYLI 118
           D++D M+   + PT   F+++I G  K  ++ +    RD++K     GF+P    YN ++
Sbjct: 520 DLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEA---RDKLKNFLEEGFIPSCMTYNSIV 576

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
               K  N D A+ ++ EM ++ V PN  TY  L+N    + ++D       +M   G  
Sbjct: 577 DGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 636

Query: 179 LDKFCYAGLITAHTNK--IPRADDTATKIIEL-VEQSKGWSSVETSG----NNAENEMMG 231
           LD   Y+ LI     +  +  A D   +++E+ +  ++   +   SG    NN E  ++ 
Sbjct: 637 LDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVW 696

Query: 232 VSKEELYNLPT--AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
             K     +P     Y     G L               E + V A +  +EML K    
Sbjct: 697 YKKMINDRIPCDLGTYTTLIDGLLK--------------EGRLVFASDLYMEMLSKG-IV 741

Query: 290 PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           PD+      +    + G ++N  K+ E+       P   +Y TL+ G
Sbjct: 742 PDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAG 788



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/399 (20%), Positives = 150/399 (37%), Gaps = 74/399 (18%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++T+L  +     LRD+Y+ M+L G+       H ++   +K  R+++   +  + K 
Sbjct: 189 NILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKE 248

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G   D   Y+ +I    K  NS+  + + EEMK+    P+  T+  ++ AC A G +  
Sbjct: 249 RGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVE 308

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
              +  +M   G  ++      L+                        KG+ +    GN 
Sbjct: 309 ALRLKEEMINCGKPMNLVVATSLM------------------------KGYCA---QGNL 341

Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
                   S   L+N  T +     G F +++   Y V    C    +++    L   +K
Sbjct: 342 D-------SALNLFNKITED-----GLFPNKV--TYSVLIEGCCNSGNIEKASELYTQMK 387

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI---CSEKFPPAELYATLVEGA---- 337
            +   P V+ V   +R YL +   +   K+F++ +    +  F    + + L +G     
Sbjct: 388 LNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDE 447

Query: 338 -----------------------MFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLL 373
                                  + G+  KG M +A     +M +R+  L P + +  +L
Sbjct: 448 ACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARD--LKPNVVTYSIL 505

Query: 374 VAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           +    K G    A  ++D M +  I P+        NGL
Sbjct: 506 IDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGL 544



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L  + R     D+Y +M+  G+ P    FH L+ G     +L++     ++M 
Sbjct: 712 YTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMD 771

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                P V +YN LI+   +  N  +A  + +EM    + P+  TY  L+N 
Sbjct: 772 RKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 823



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 107/297 (36%), Gaps = 41/297 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++V     +        VY +M   GV P    + SLI G  K +R+      RD+M+
Sbjct: 572 YNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMR 631

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   DV  Y+ LI    K ++ + A  +F E+ +  + PN   Y  +++         
Sbjct: 632 EKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG-------- 683

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                 RD+    A L    Y  +I    ++IP    T T +I+                
Sbjct: 684 -----FRDLNNMEAAL--VWYKKMI---NDRIPCDLGTYTTLID---------------- 717

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                  G+ KE      +  Y+      +   +  +HV  +       ++    +LE +
Sbjct: 718 -------GLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM 770

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            +   +P V I    I  Y   G++     + ++ +     P    Y  L+ G   G
Sbjct: 771 DRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKG 827



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPN 145
           KG ++ +     D M   G +P+V  YN +I   G C+  N D A  +F +M   ++KPN
Sbjct: 441 KGGKMDEACSLLDNMVNQGMVPNVVSYNDMI--LGHCRKGNMDMASSVFSDMLARDLKPN 498

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  L++     G  +    +   M +       F +  +I     K+ +  +   K+
Sbjct: 499 VVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLC-KVGQMSEARDKL 557

Query: 206 IELVEQ 211
              +E+
Sbjct: 558 KNFLEE 563



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFF 98
           N   YN +++ L    +      + D+M+  G+ P    ++ +I+G   KG+    +  F
Sbjct: 428 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 487

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D M A    P+V  Y+ LI    K  +S++A+ +F++M    + P   T+  ++N    
Sbjct: 488 SD-MLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCK 546

Query: 159 AGQL 162
            GQ+
Sbjct: 547 VGQM 550



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 8/182 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTF 96
           N   Y +++       R  L     D+M   G++     + +LI G  K   +   QD F
Sbjct: 603 NVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF 662

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           F   ++   G  P+  VYN +IS      N + A+  +++M    +  +  TY  L++  
Sbjct: 663 F---ELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGL 719

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
              G+L     +  +M + G   D   +  L+    NK     + A KI+E +++     
Sbjct: 720 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNK--GQLENARKILEEMDRKNMTP 777

Query: 217 SV 218
           SV
Sbjct: 778 SV 779



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 67/162 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    + + Y+ ++     +R     +D++ +++  G+ P R +++S+I G    
Sbjct: 628 DEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDL 687

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           + ++    +  +M  +    D+  Y  LI    K      A  ++ EM    + P+  T+
Sbjct: 688 NNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITF 747

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+N     GQL+    I+ +M           Y  LI  +
Sbjct: 748 HVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGY 789


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 148/379 (39%), Gaps = 47/379 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L    +     ++   M+  G +P    F  LI G  +   +       
Sbjct: 367 NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL 426

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M+    +P    Y  +I+    CK+   A ++ E+M    +KPN   Y  L+ A A+ 
Sbjct: 427 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASE 486

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+++    ++  M+ +G   D FCY  +I+   +K  + ++ +T ++E+  Q +G     
Sbjct: 487 GRIEEARRLLDGMSCSGVAPDIFCYNAIISC-LSKAGKMEEASTYLLEI--QGRGLKPDA 543

Query: 220 TS------GNNAENEMMGVSK--EELY------NLPTAEYV---HRRGGFLSRLLTVYHV 262
            +      G +   +M   +K  +E+       N P    +   H + G L   L+++  
Sbjct: 544 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR- 602

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             HA   L DVQ     +  L                   L +G +    KVF +     
Sbjct: 603 RLHALGVLPDVQTCSAFIHGL-------------------LKNGRVQEALKVFSELKEKG 643

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y++L+ G    G   K  +L  +  +   + NIF+   +   L       KSG
Sbjct: 644 LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC------KSG 697

Query: 382 GYTTANYIWDLMQARKITP 400
               A  ++D M  + + P
Sbjct: 698 DIQRARKLFDGMPEKGLEP 716



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 65/146 (44%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +    +   Y+++++    Q       +++D+M L G+ P   ++++L+ G  K  
Sbjct: 638 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 697

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +Q      D M   G  PD   Y+ +I    K +N  +A  +F EM    V+P+   Y 
Sbjct: 698 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 757

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            L++ C   G ++    + R+M   G
Sbjct: 758 ALVHGCCKEGDMEKAMNLFREMLQKG 783



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/307 (19%), Positives = 118/307 (38%), Gaps = 6/307 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +RN   +A  Y  ++  L   +   L   + + M   G++P   ++  LI+     
Sbjct: 427 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASE 486

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     D M  +G  PD+  YN +IS   K    ++A     E++   +KP+  T+
Sbjct: 487 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 546

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              +   +  G++        +M   G   +   Y  LI  H       +  A  I   +
Sbjct: 547 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME--ALSIFRRL 604

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
                   V+T        +     +E   + +     +  G +  + T   +    C +
Sbjct: 605 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE---LKEKGLVPDVFTYSSLISGFCKQ 661

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
            +  +A E   EM  K   +P+++I    +     SGDI    K+F+        P +  
Sbjct: 662 GEVEKAFELHDEMCLKGI-APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 720

Query: 330 YATLVEG 336
           Y+T+++G
Sbjct: 721 YSTMIDG 727



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ ++   G+ P    + SLI G  K   ++  F   D+M   G  P++ +YN L+   G
Sbjct: 635 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVD--G 692

Query: 123 KCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK+ D  +A ++F+ M +  ++P+  TY  +++    +  +   +++  +M + G    
Sbjct: 693 LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 752

Query: 181 KFCYAGLI 188
            F Y  L+
Sbjct: 753 SFVYNALV 760



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V     +       +++ +M+  G   T   F++LI G  K  ++Q+      +M 
Sbjct: 756 YNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMI 814

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A   +PD   Y  +I    K    ++A  +F+EM++  +  +  TY  L+      GQ  
Sbjct: 815 AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSS 874

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            V+A+   M A G   D+  Y  +I AH  +
Sbjct: 875 EVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 905



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 121/345 (35%), Gaps = 19/345 (5%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSD 128
           G+ P   ++  +I G  +   + +    +  M   G +P+   Y Y I   G C  K  +
Sbjct: 258 GLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNT--YTYTIITAGLCRAKRMN 315

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A   FEEM+K  +KP+      L++     G +D V  I   M + G  ++   Y  LI
Sbjct: 316 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLI 375

Query: 189 --TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
                  K+ +A +    ++ L  +    +             MG + E L  +     V
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
                        Y    +     KD+     LLE +      P+V +    I  Y   G
Sbjct: 436 PSA--------VSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEG 487

Query: 307 DIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPR 366
            I+   ++ +   CS   P    Y  ++           M+ A   L+ +  R   L P 
Sbjct: 488 RIEEARRLLDGMSCSGVAPDIFCYNAIISCL---SKAGKMEEASTYLLEIQGRG--LKPD 542

Query: 367 MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
             +    +    K+G  T A   +D M    + P+ P      NG
Sbjct: 543 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLING 587



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 136/349 (38%), Gaps = 52/349 (14%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            +E   +  A N   YN +V  L         R ++D M   G++P    + ++I G  K 
Sbjct: 672  DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 731

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVC---------------------------- 121
              + + F    +M + G  P   VYN L+  C                            
Sbjct: 732  ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 791

Query: 122  ----GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
                G CK+    +A ++F+EM   ++ P+  TY  +++    AG+++    + ++M   
Sbjct: 792  TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 851

Query: 176  GAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS------GNNAENEM 229
               +D   Y  L+  + NK+ ++ +      ++V  +KG    E +       +  E+ +
Sbjct: 852  NLIVDTVTYTSLMYGY-NKLGQSSEVFALFEKMV--AKGVKPDEVTYGLVIYAHCKEDNL 908

Query: 230  MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
            +     E + L   E V +  G L++  T++ +   A  + +D+     LL+ + +    
Sbjct: 909  V-----EAFKLRD-EVVGK--GMLTK-GTIHDLLITALCKREDLTEASKLLDEMGELGLK 959

Query: 290  PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
            P +      +R +  +G +D   +VFE        P       LV G +
Sbjct: 960  PSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNL 1008



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 119/333 (35%), Gaps = 53/333 (15%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           GV P      + I G +K  R+Q+      ++K  G +PDV  Y+ LIS  G CK    +
Sbjct: 608 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS--GFCKQGEVE 665

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A  + +EM    + PN   Y  L++    +G +     +   M   G   D   Y+ +I
Sbjct: 666 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 725

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
             +                     K  +  E      E    GV                
Sbjct: 726 DGYC--------------------KSENVAEAFSLFHEMPSKGVQPHSF----------- 754

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQ-AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
                     VY+   H C +  D++ AM    EML+K   +   +  +  I  Y  S  
Sbjct: 755 ----------VYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTL--IDGYCKSCK 802

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRM 367
           I    ++F++ I  +  P    Y T+++   +      M+ A      M  RN+ +    
Sbjct: 803 IQEASQLFQEMIAKQIMPDHVTYTTVID---WHCKAGKMEEANLLFKEMQERNLIVDTVT 859

Query: 368 GSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            + L+      K G  +    +++ M A+ + P
Sbjct: 860 YTSLMY--GYNKLGQSSEVFALFEKMVAKGVKP 890



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +   L   +R    +  +++M   G++P  +   +LI G M+   + +    +
Sbjct: 297 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 356

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D M + G   ++  YN LI    K    ++A  I + M     KPN +T+ CLL
Sbjct: 357 DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTF-CLL 409



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 61/137 (44%)

Query: 63   VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
            +++ M+  GV+P    +  +I    K   L + F  RD++   G L    +++ LI+   
Sbjct: 879  LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALC 938

Query: 123  KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
            K ++  +A ++ +EM +  +KP+      L+ +   AG++D    +   + + G   D  
Sbjct: 939  KREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTT 998

Query: 183  CYAGLITAHTNKIPRAD 199
                L+  + N     D
Sbjct: 999  TLIDLVNGNLNDTDSED 1015


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 2/162 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRF--FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           R  Y ++   Y+ ++ SLT   +    +L+ +Y ++  D ++    L + +IVG  K   
Sbjct: 283 RDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGD 342

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           +     F   ++ NG  P  A    +I+  G    +++A  IFEE+K+  + P  + Y  
Sbjct: 343 VNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNA 402

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           LL      G L    +IV +M  +G   D+  Y+ LI A+ N
Sbjct: 403 LLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYAN 444



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 13/303 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R  ++ +   Y+ ++ +  +  R+   R V  +M   GV+P   +F  ++       
Sbjct: 422 EMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRG 481

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + Q +F    +M+ +G  PD   YN +I   GKC   D A+  F+ M+   V+P+  T+ 
Sbjct: 482 KWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWN 541

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++    +G  +    +   M  +G       Y  +I +   +  R +D  T + ++  
Sbjct: 542 TLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQ-ERWEDVKTLLGKM-- 598

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
           QS+G        N      +G+S++ +     A  V R  G    +L +  +      + 
Sbjct: 599 QSQG-----LLANVVTYTTLGLSEQAI----NAFRVMRADGLKPSVLVLNSLINAFGEDR 649

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
           +D +A   L  M + D K PDV      ++  +     D    V+E+   S   P  +  
Sbjct: 650 RDAEAFSVLQYMKENDLK-PDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKAR 708

Query: 331 ATL 333
           A L
Sbjct: 709 AML 711



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + YN ++ S   Q R+       D   L G   ++ L  +++  T  G   Q    FR  
Sbjct: 573 TTYNIMINSFGEQERW------EDVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFR-V 625

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M+A+G  P V V N LI+  G+ +   +A  + + MK+ ++KP+  TY  L+ A     +
Sbjct: 626 MRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEK 685

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            D V A+  +MT +G   D+   A L +A
Sbjct: 686 FDKVPAVYEEMTLSGCTPDRKARAMLRSA 714



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 68/142 (47%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V+T+L +  R      +++++   G+ P    +++L+ G +K   L+D      +M+ +G
Sbjct: 368 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 427

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
           F PD   Y+ LI         + A  + +EM+   V+PN   +  +L +    G+    +
Sbjct: 428 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSF 487

Query: 167 AIVRDMTAAGAGLDKFCYAGLI 188
            ++R+M  +G   D+  Y  +I
Sbjct: 488 QVLREMRNSGVSPDRHFYNVMI 509



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 60/125 (48%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G+ P      ++I       R ++     +++K  G +P    YN L+    K  +   
Sbjct: 356 NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKD 415

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A  I  EM++    P+  TY  L++A A AG+ +    ++++M A+G   + + ++ ++ 
Sbjct: 416 AESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILA 475

Query: 190 AHTNK 194
           ++ ++
Sbjct: 476 SYRDR 480


>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 691

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 15/224 (6%)

Query: 2   RLLQSIYRHHKSVGGALGRRFFVTSAGAE------EYARRNYANNASEYNTVVTSLTSQR 55
           ++ Q   R  K   GAL + F V    +E      E  ++  ++NA  YNT++ +     
Sbjct: 309 KMNQKGVRWGKEAFGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCKSN 368

Query: 56  RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115
           R      ++ +M   G++PT   F+ L+    +  + +       +MK  G  P+   Y 
Sbjct: 369 RVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYT 428

Query: 116 YLISVCGKCKN-SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
            LIS  G+ K  SD A   F +MKK  +KP   +Y  +++A + +G  +  YA+  +M  
Sbjct: 429 CLISAYGRQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIR 488

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTAT--KIIELV--EQSKG 214
            G       Y  L+ A      R  DT T  KI +L+  E+ KG
Sbjct: 489 EGIKPSIETYTTLLDAFR----RVGDTETLMKIWKLMMSEKVKG 528



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M   GV+  ++ F +LI        L +    + +M+  G   +  VYN L+    K
Sbjct: 307 FEKMNQKGVRWGKEAFGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCK 366

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
               ++A  +F EMK   +KP   T+  L+ A +   Q   V +++ +M   G   +   
Sbjct: 367 SNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANS 426

Query: 184 YAGLITAHTNKIPRADDTATKIIEL 208
           Y  LI+A+  +   +D  A   +++
Sbjct: 427 YTCLISAYGRQKKMSDMAADAFLKM 451



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 43/299 (14%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   YN  ++ L    R+     VY+ M  DGV P       +I+G  K G   +D + F
Sbjct: 247 NVRVYNAAISGLLYDGRYKDAWKVYESMETDGVLPDHVTCSIMIIGMRKLGHSAKDAWQF 306

Query: 99  RDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            ++M   G       +  LI S C +   S+ A+ I  EM+K  +  N   Y  L++A  
Sbjct: 307 FEKMNQKGVRWGKEAFGALIKSFCVEGLLSE-ALIIQSEMEKKGISSNAIVYNTLMDAYC 365

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            + +++    +  +M A G       +  L+ A++ ++        KI+E +        
Sbjct: 366 KSNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRM------QPKIVESLL------- 412

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
                  AE +  G+        P A              T    A+    ++ D+ A +
Sbjct: 413 -------AEMKDFGLK-------PNANS-----------YTCLISAYGRQKKMSDMAA-D 446

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             L+M KK    P  +     I  Y  SG  +  + VFE+ I     P  E Y TL++ 
Sbjct: 447 AFLKM-KKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDA 504


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 19/373 (5%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR    +   YN ++ +   +       D+   M+ DG  P    +++++ G  K  R++
Sbjct: 73  RRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVE 132

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVC 151
           +     ++M+  G  P+   +N +I   G C+ S  DQA ++F EM+  ++ P+  +Y  
Sbjct: 133 EALLLFNEMERLGCTPNRRSHNTII--LGLCQQSKIDQACQVFHEMEARDIPPDSWSYGI 190

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           L++  A AG+L+  Y + R M  +G       Y  +I  H   +    D A ++ + + +
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI--HGMCLAYTLDEALELFKSM-R 247

Query: 212 SKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
           SKG      + N   +      K +E + L          G +  ++T Y         +
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKR---MTDDGHVPDVVT-YSTLISGLCSI 303

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             V     LLE + K +  P V      I     +G I    +V +  + S + P    Y
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTY 363

Query: 331 ATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
            TLV G    G T +    A++ L +M +R   L+P + +   LV+   K+     A  +
Sbjct: 364 NTLVHGHCRAGQTER----ARELLSDMVARG--LAPNVVTYTALVSGLCKANRLPEACGV 417

Query: 390 WDLMQARKITPSL 402
           +  M++    P+L
Sbjct: 418 FAQMKSSGCAPNL 430



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 35/335 (10%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R     N   +NT++  L  Q +      V+ +M    + P    +  LI G  K  
Sbjct: 140 EMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAG 199

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L + +    +M  +G  P    YN +I         D+A+ +F+ M+    +P+  T+ 
Sbjct: 200 KLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFN 259

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE--- 207
            L++A    G++D  + +++ MT  G   D   Y+ LI+   + I R DD A  ++E   
Sbjct: 260 ILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS-IARVDD-ARHLLEDMV 317

Query: 208 -------LVEQSKGWSSVETSGNNAE-----NEMMGVSKE-ELYNLPTAEYVHRRGG--- 251
                  +V Q+     +  +G   E     + M+   +  ++    T  + H R G   
Sbjct: 318 KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTE 377

Query: 252 --------FLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
                    ++R L    V + A     C   +  +A     +M K    +P+++     
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSSGCAPNLFTYTAL 436

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           I  +  +G +D G K+F + +C+   P   +Y TL
Sbjct: 437 ILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 1/169 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  +R         NT++  L    R    R+V D M+  G  P    +++L+ G  + 
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 373

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +        M A G  P+V  Y  L+S   K     +A  +F +MK     PN  TY
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
             L+    +AGQ+D    +  +M  AG   D   Y G + A   K  R+
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY-GTLAAELCKSGRS 481



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V       +    R++  DM+  G+ P    + +L+ G  K +RL +      QMK
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G  P++  Y  LI         D  +++F EM    + P+   Y  L      +G+  
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 164 PVYAIVRD 171
               I+R+
Sbjct: 483 RALEILRE 490



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 80/415 (19%), Positives = 146/415 (35%), Gaps = 50/415 (12%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           RN + ++  Y  ++  L    +    RD++  ++  GV P+   + SLI G    +   D
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 63

Query: 95  TFFFRDQMKANGFLPDVAVYNYLI----------SVC----------------------- 121
                  M   G  P    YN +I            C                       
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 123

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK+   ++A+ +F EM++    PN +++  ++       ++D    +  +M A     
Sbjct: 124 GLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPP 183

Query: 180 DKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
           D + Y  LI   A   K+    + A K+   +  S    S  T         +  + +E 
Sbjct: 184 DSWSYGILIDGLAKAGKL----NEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
             L   + +  +G   SR    +++   A  +   +     LL+ +  D   PDV     
Sbjct: 240 LEL--FKSMRSKGCRPSRF--TFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357
            I        +D+   + ED +  +  P      TL+ G       K  +   D +V+  
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
                 SP + +   LV    ++G    A  +   M AR + P++    A  +GL
Sbjct: 356 Q-----SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 27  AGAEEYAR--------RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           AG  E AR        R  A N   Y  +V+ L    R      V+  M   G  P    
Sbjct: 373 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 432

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +LI+G     ++        +M   G  PD  VY  L +   K   S +A+ I  E +
Sbjct: 433 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 492

Query: 139 KY--EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +         + Y   ++    AG+++     VRDM   G
Sbjct: 493 ESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGG 532


>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 484

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 72/150 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLCGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  YN +I+   + K  ++A + F EMK   ++P   TY  L+    +  ++D
Sbjct: 178 XREISPDVITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               ++ +M   G   +   Y+ L+    N
Sbjct: 238 DALTLLEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R  + +   YNT++      ++       + +M    ++PT   + 
Sbjct: 171 RFF------EDMKXREISPDVITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   R+ D     ++MK  G  P+   Y+ L+  +C   K S+ +  + E + K
Sbjct: 225 TLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM------TAA---GAGLDKFCYAG 186
           Y    +   ++ L++    AG LD    +++ M      T A   G  ++ +C AG
Sbjct: 285 YIAPKDNSIFLRLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 45/309 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R     + + YN ++ +            + + M  + +QP+   F  +I G    
Sbjct: 476 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 535

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      D M+ +G +P V  YN LI    +     +A+ + ++M    + PN  TY
Sbjct: 536 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 595

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++   AA+G +   +     +  +G  LD + Y  L+ A                   
Sbjct: 596 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK---------------- 639

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF--LSRLLTVYHVAFHAC 267
                      SG                 + +A  V R   F  + R   +Y++     
Sbjct: 640 -----------SGR----------------MQSALAVTREMSFQKIPRNTFIYNILIDGW 672

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
           A   DV   E L++ +K+D   P+++     I     +GD+    KV E+ +     P  
Sbjct: 673 ARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNV 732

Query: 328 ELYATLVEG 336
           + Y TL++G
Sbjct: 733 KTYTTLIKG 741



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 141/354 (39%), Gaps = 19/354 (5%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  +M  DG+    D++HS++ G              +++K  GF P +  Y  L+++ 
Sbjct: 368 ELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLY 427

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A+ I +EM+   +K N +TY  L+N           +AI  +M  +G   D+
Sbjct: 428 VKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDR 487

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM---GVSKEELY 238
             Y  LI A         D A  I+E +++ +   S     N A   ++    V+ +   
Sbjct: 488 AIYNLLIEAFCKM--GNMDRAICILEKMQKERMQPS-----NRAFRPIIEGYAVAGDMKS 540

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
            L T + + RR G +  ++T Y+   H       VQ   ++L+ +     +P+ +     
Sbjct: 541 ALDTLDLM-RRSGCVPTVMT-YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTII 598

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQLAQDTLVNMN 357
           +R Y  SGDI    + F     S       +Y TL+      G     + + ++      
Sbjct: 599 MRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKI 658

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            RN F+        +L+    + G    A  +   M+   + P++    +Y N 
Sbjct: 659 PRNTFIYN------ILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINA 706



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 8/211 (3%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A   E + +    N   YN ++     +   +   D+   M  DGV P    + S I   
Sbjct: 648 AVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC 707

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q      ++M   G  P+V  Y  LI    +    D+A++ FEEMK   +KP+ 
Sbjct: 708 CKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDE 767

Query: 147 QTYVCLLNACAAAGQL------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +Y CL+ +  +   +        + ++ R+M+     +D    A   +   +KI R   
Sbjct: 768 ASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVD-LRTAVHWSRWLHKIERTGG 826

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMG 231
             T+ ++ +     W+S+E  G  + +  MG
Sbjct: 827 ALTEALQRI-FPPDWNSLEFLGEPSSSISMG 856



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +     R      V  +M    +     +++ LI G  +   + +      QMK
Sbjct: 630 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 689

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P++  Y   I+ C K  +  +A ++ EEM    +KPN +TY  L+   A     D
Sbjct: 690 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 749

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                  +M  AG   D+  Y  L+T+
Sbjct: 750 RALKCFEEMKLAGLKPDEASYHCLVTS 776



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 59/132 (44%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  +++M   G++P   +F SL+        ++      ++MK+ G    +  Y+ LIS 
Sbjct: 262 RATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISG 321

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  +S  A  +F+E K      NG  Y  +++A   +G ++    +VR+M   G    
Sbjct: 322 FAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAP 381

Query: 181 KFCYAGLITAHT 192
              Y  ++  +T
Sbjct: 382 IDVYHSMMHGYT 393


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 10/299 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y++++  L    R    R ++D M   G++P    + +L+ G      L +     
Sbjct: 305 NVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 364

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M  NG  PD  V+N LI    K +  DQA+ +F +M+++ + PN   Y  +++    +
Sbjct: 365 DLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV- 218
           G +D        M   G   +   Y  LI        + D     I+E++++    +++ 
Sbjct: 425 GSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCT-CDKWDKAEELILEMLDRGICLNTIF 483

Query: 219 -ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
             +  ++   E   +  E+L++L        R G    ++T   +    C   K  +A +
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMV------RIGVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            L  M+    K PD+      I  Y     +D+   +F++ + S   P    Y  +++G
Sbjct: 538 LLASMVSVGVK-PDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 595



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 72/165 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +   +R    + + Y T++    ++     +  + D M+ +G+QP   +F+ LI    K 
Sbjct: 330 DSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQ 389

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++        +M+ +G  P+V  Y  +I V  K  + D A+  FE+M    + PN   Y
Sbjct: 390 EKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVY 449

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++      + D    ++ +M   G  L+   +  +I +H  +
Sbjct: 450 TSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKE 494



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   Y++++ +L   +      +V + M+ +GV P    ++S++ G     
Sbjct: 226 EMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 285

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++      +M+++G  P+V  Y+ L++   K   S +A +IF+ M K  ++P+  TY 
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            LL   A  G L  ++A++  M   G   D   +  LI A+  +
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQ 389



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 152/375 (40%), Gaps = 20/375 (5%)

Query: 44  YNTVVTSLT----SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YN ++  L     SQ    LL  + DD    G  P    +++++ G  K       +   
Sbjct: 166 YNNLLKGLCDENRSQEALELLHMMADDRG-GGSPPDVVSYNTVLNGFFKEGDSDKAYSTY 224

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G LPDV  Y+ +I+   K +  D+A+ +   M K  V P+  TY  +L+   ++
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           GQ       ++ M + G   +   Y+ L+  +  K  R+ + A KI + + +      + 
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMN-YLCKNGRSTE-ARKIFDSMTKRGLEPDIA 342

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T     +      +  E++ L   + + R G  +     V+++   A A+ + V     +
Sbjct: 343 TYRTLLQGYATKGALVEMHAL--LDLMVRNG--IQPDHHVFNILICAYAKQEKVDQAMLV 398

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
              +++   +P+V      I     SG +D+    FE  I     P   +Y +L+ G   
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC- 457

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
             T      A++ ++ M  R I L+    +   ++ +  K G    +  ++DLM    + 
Sbjct: 458 --TCDKWDKAEELILEMLDRGICLNTIFFNS--IIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 400 PSLPAVEAYYNGLKD 414
           P +      YN L D
Sbjct: 514 PDI----ITYNTLID 524



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   +N+++ S   + R      ++D M+  GV+P    +++LI G     
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +       M + G  PD+  Y  LI+  G C+ S  D A+ +F+EM    V PN  T
Sbjct: 531 KMDEATKLLASMVSVGVKPDIVTYGTLIN--GYCRVSRMDDALALFKEMVSSGVSPNIIT 588

Query: 149 YVCLLNA 155
           Y  +L  
Sbjct: 589 YNIILQG 595


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 12/173 (6%)

Query: 22  FFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
           FFV      E  RR    +A  Y  ++ +  +   F    +++++M+  G  P   ++++
Sbjct: 476 FFV------EAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYT 529

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           LI G  +  R+ D  F   ++K  G  PD   YN LI   G C+ +++  R+FE +K+ E
Sbjct: 530 LISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIG--GFCR-TNKFHRVFEMLKEME 586

Query: 142 ---VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              +KP+  TY  L+   +  G L     ++R M  AG       Y  +I A+
Sbjct: 587 EAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAY 639



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++++D+M  +GV P     ++L+ G  +  R+     F  + +  G   D   Y  LI+ 
Sbjct: 439 KELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINA 498

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                N ++A+ +F EM K    P+   Y  L++  + AG++     ++ ++   G   D
Sbjct: 499 FCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPD 558

Query: 181 KFCYAGLITA--HTNKIPRA 198
             CY  LI     TNK  R 
Sbjct: 559 TVCYNTLIGGFCRTNKFHRV 578



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 128/349 (36%), Gaps = 51/349 (14%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           G  P    ++ LI G  K   ++      D+M   G  P+V   N L+   G C+     
Sbjct: 414 GCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVG--GMCRTGRVS 471

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            A+  F E ++  +K +  TY  L+NA       +    +  +M  +G   D   Y  LI
Sbjct: 472 SAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLI 531

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
           +  +     AD  A+ ++                  AE + +G+  +      T  Y   
Sbjct: 532 SGFSQAGRMAD--ASFVL------------------AELKKLGIRPD------TVCYNTL 565

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
            GGF              C   K  +  E L EM +   K PD       I     +GD+
Sbjct: 566 IGGF--------------CRTNKFHRVFEMLKEMEEAGLK-PDTITYNTLIAYASKNGDL 610

Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRM 367
               KV    I +   P    Y  ++    + G   + M++ +D  +   S+   + P  
Sbjct: 611 KFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKD--MKAASK---VPPNT 665

Query: 368 GSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDRE 416
               +L+ +  K+    +A  + + M+   +TP+     A + GL+D +
Sbjct: 666 VIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEK 714



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM-- 102
           N+++T L  +  F  + ++ + M+   +QP    F  LI    K  R+ D     ++M  
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSG 368

Query: 103 -KANGFL-----PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNA 155
            K +G +     PDV +YN LI    K     + + + E M+  +   P+  TY CL++ 
Sbjct: 369 GKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDG 428

Query: 156 CAAAGQLDPVYAIVRDMTAAGAG 178
              AG+++    +  +M   G  
Sbjct: 429 FCKAGEIEKGKELFDEMNKEGVA 451



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 63/159 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +   A N    NT+V  +    R     + + +    G++     + +LI      
Sbjct: 443 DEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNV 502

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +  +      ++M  +G  PD  VY  LIS   +      A  +  E+KK  ++P+   Y
Sbjct: 503 NNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCY 562

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+       +   V+ ++++M  AG   D   Y  LI
Sbjct: 563 NTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           R  V  +  +E  RR    N   ++ V+  L    +F    DV +DM   G  P+   ++
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           ++I G  K  ++        +M A    P+   +N LI    + +N   A ++FEEM++ 
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            ++PN  TY  L+N   + G+LD    +   M+  G   +   Y  LI     K
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK 382



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 1/172 (0%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           G+ F   +   E  A+R + N  + +N ++            + V+++M   G+QP    
Sbjct: 278 GKMFKADALLKEMVAKRIHPNEIT-FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVT 336

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++SLI G     +L +    +D+M   G  P+V  YN LI+   K K   +A  + +++ 
Sbjct: 337 YNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIG 396

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           K  + PN  T+  L++A   AG++D  + +   M   G   +   Y  LI  
Sbjct: 397 KRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVG 448



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 7/177 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++     ++     R++ DD+   G+ P    F++LI    K  R+ D F  R
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             M   G  P+V+ YN LI   G C+  N  +A ++ +EM+   +K +  TY  L++A  
Sbjct: 428 SMMLDTGVCPNVSTYNCLI--VGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALC 485

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
             G+      ++ +M   G       Y  LI  +       + TA   +  + + KG
Sbjct: 486 KKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGY---FREGNSTAALNVRTLMEKKG 539



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 67/165 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    N   YN+++  L S  +      + D M   G++P    +++LI G  K 
Sbjct: 323 EEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK 382

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L++     D +   G  P+V  +N LI   GK    D A  +   M    V PN  TY
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            CL+      G +     + ++M   G   D   Y  L+ A   K
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLD-GVQPTRDLFHSLIVG 85
           ++  +R  A N   +NT++ +     R    FLLR     MMLD GV P    ++ LIVG
Sbjct: 393 DDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS----MMLDTGVCPNVSTYNCLIVG 448

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
             +   +++      +M+ NG   D+  YN L+    K   + +A+R+ +EM +  + P+
Sbjct: 449 FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPS 508

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  L++     G       +   M   G   +   Y  LI    NK  + ++    +
Sbjct: 509 HLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNK-GKLEEANRLL 567

Query: 206 IELVEQSKGWSSVETSGNNAENEMM 230
            E++E  KG     T+ +   +EMM
Sbjct: 568 NEMLE--KGLIPNRTTYDILRDEMM 590



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 5/174 (2%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
            E+     ++ +   YNT++       + F    +  +M+   + P    F+ LI G  +
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNG 146
              +       ++M+  G  P+V  YN LI+  G C N   D+A+ + ++M    +KPN 
Sbjct: 312 DENVTAAKKVFEEMQRQGLQPNVVTYNSLIN--GLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            TY  L+N       L     ++ D+   G   +   +  LI A+  K  R DD
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAY-GKAGRMDD 422


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           R  V  +  +E  RR    N   ++ V+  L    +F    DV +DM   G  P+   ++
Sbjct: 209 RIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYN 268

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           ++I G  K  ++        +M A    P+   +N LI    + +N   A ++FEEM++ 
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            ++PN  TY  L+N   + G+LD    +   M+  G   +   Y  LI     K
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK 382



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 1/172 (0%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           G+ F   +   E  A+R + N  + +N ++            + V+++M   G+QP    
Sbjct: 278 GKMFKADALLKEMVAKRIHPNEIT-FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVT 336

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++SLI G     +L +    +D+M   G  P+V  YN LI+   K K   +A  + +++ 
Sbjct: 337 YNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIG 396

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           K  + PN  T+  L++A   AG++D  + +   M   G   +   Y  LI  
Sbjct: 397 KRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVG 448



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 67/165 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    N   YN+++  L S  +      + D M   G++P    +++LI G  K 
Sbjct: 323 EEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK 382

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L++     D +   G  P+V  +N LI   GK    D A  +   M    V PN  TY
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            CL+      G +     + ++M   G   D   Y  L+ A   K
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 10/196 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++     ++     R++ DD+   G+ P    F++LI    K  R+ D F  R
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             M   G  P+V+ YN LI   G C+  N  +A ++ +EM+   +K +  TY  L++A  
Sbjct: 428 SMMLDTGVCPNVSTYNCLI--VGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALC 485

Query: 158 AAGQLDPVYAIVRDMT---AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
             G+      ++ +MT     G   +   Y  LI    NK  + ++    + E++E  KG
Sbjct: 486 KKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNK-GKLEEANRLLNEMLE--KG 542

Query: 215 WSSVETSGNNAENEMM 230
                T+ +   +EMM
Sbjct: 543 LIPNRTTYDILRDEMM 558



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 134/323 (41%), Gaps = 18/323 (5%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
            E+     ++ +   YNT++       + F    +  +M+   + P    F+ LI G  +
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNG 146
              +       ++M+  G  P+V  YN LI+  G C N   D+A+ + ++M    +KPN 
Sbjct: 312 DENVTAAKKVFEEMQRQGLQPNVVTYNSLIN--GLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            TY  L+N       L     ++ D+   G   +   +  LI A+  K  R DD A  + 
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAY-GKAGRMDD-AFLLR 427

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR--RGGFLSRLLTVYHVAF 264
            ++  +    +V T        ++G  +E   N+  A  + +   G  L   L  Y++  
Sbjct: 428 SMMLDTGVCPNVST----YNCLIVGFCREG--NVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 265 HA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQN--IRCYLHSGDIDNGHKVFEDYICS 321
            A C + +  +A+  L EM   ++K     IV  N  I+ + + G ++  +++  + +  
Sbjct: 482 DALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEK 541

Query: 322 EKFPPAELYATLVEGAM-FGYTP 343
              P    Y  L +  M  G+ P
Sbjct: 542 GLIPNRTTYDILRDEMMEKGFIP 564


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y +++       +  +  +V   M  DG QP    ++SL+ G +K  +L       
Sbjct: 346 NVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALL 405

Query: 100 DQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+ +G +P+V  Y  L+   G+C   + D A R+FE M++  +KP+   Y  L +A  
Sbjct: 406 TKMQKDGIIPNVITYTTLLQ--GQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALC 463

Query: 158 AAGQLDPVYA-IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
            AG+ +  Y+ IVR     G  L K  Y  LI   + K    D  AT I  ++++
Sbjct: 464 KAGRAEEAYSFIVR----KGVALTKVYYTTLIDGFS-KAGNTDFAATLIERMIDE 513



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   + N   +  +++ L    R    R ++D M  +GV P+   ++++IVG  K  R+ 
Sbjct: 166 RDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMN 225

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKC-KNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           D    ++ M+ NG  PD   YN LI   G C + +++A  +     K    P   T+  L
Sbjct: 226 DALKIKELMEKNGCHPDDWTYNTLIY--GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNL 283

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +N    A + D    +   M ++   LD   +  LI +   K
Sbjct: 284 INGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 325



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 30/270 (11%)

Query: 39  NNASE--YNTVVTSLTSQRRFFLLRDVYDD-------MMLDGVQPTRDLFHSLIVGTMKG 89
           NNA +  +   V + T+    + + + +DD       MM    +    +F  LI   +K 
Sbjct: 266 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 325

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            RL++     +++ ANG +P+V  Y  +I   G CK+   D A+ + + M++   +PN  
Sbjct: 326 DRLKEAKELLNEISANGLVPNVITYTSIID--GYCKSGKVDIALEVLKMMERDGCQPNAW 383

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  L+       +L    A++  M   G   +   Y  L+    ++     D A ++ E
Sbjct: 384 TYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDE--HDFDNAFRLFE 441

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE----YVHRRGGFLSRLLTVYHVA 263
           ++EQ         +G   +     V  + L     AE    ++ R+G  L+++   Y   
Sbjct: 442 MMEQ---------NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKV--YYTTL 490

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVY 293
               ++  +     TL+E +  +  +PD Y
Sbjct: 491 IDGFSKAGNTDFAATLIERMIDEGCTPDSY 520



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 51/118 (43%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M+  G+ PT   + SLI G  K  RL++     D M   G  P+  +Y  LI  C   K 
Sbjct: 701 MVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKF 760

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
            ++A+     M +   +P  ++Y  L+      G  + V ++  D+   G   D+  +
Sbjct: 761 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAW 818



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 2/186 (1%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
            R+  A     Y T++   +          + + M+ +G  P    +  L+    K  RL
Sbjct: 476 VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRL 535

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            +     DQM   G    +  Y  LI    +    D A R++ EM     KP+  TY   
Sbjct: 536 NEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVF 595

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVE 210
           +N+    G+L+    ++  M   G   D   Y  LI    H   I RA  T  +++    
Sbjct: 596 INSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASC 655

Query: 211 QSKGWS 216
           +   W+
Sbjct: 656 EPNYWT 661



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + +Y++M   G +P+   +   I    K  RL+D      +M+  G  PDV  YN LI  
Sbjct: 574 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 633

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           CG     D+A    + M     +PN  TY CLL      G L    A VR +  +G
Sbjct: 634 CGHMGYIDRAFSTLKRMVGASCEPNYWTY-CLLLKHLLKGNL----AYVRSVDTSG 684



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 37/83 (44%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M  DG  P    F  LI G  K  R+ D     D M  NG +P V  YN +I    K   
Sbjct: 164 MKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 223

Query: 127 SDQAIRIFEEMKKYEVKPNGQTY 149
            + A++I E M+K    P+  TY
Sbjct: 224 MNDALKIKELMEKNGCHPDDWTY 246



 Score = 44.7 bits (104), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++ +L  Q+R      + D M L G++ T   +  LI   ++  +        ++M 
Sbjct: 522 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 581

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G  P    Y   I+   K    + A  +  +M++  V P+  TY  L++ C   G +D
Sbjct: 582 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYID 641

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK----IPRADDTATKIIELVEQSKGWSSVE 219
             ++ ++ M  A    + + Y  L+  H  K      R+ DT + +  L+E    W  +E
Sbjct: 642 RAFSTLKRMVGASCEPNYWTYC-LLLKHLLKGNLAYVRSVDT-SGMWNLIELDITWQLLE 699



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  Q+      ++ ++ + +G  PT   F +LI G     +  D    +++M 
Sbjct: 246 YNTLIYGLCDQKTEEA-EELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMM 304

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++    D+ V+  LI+   K     +A  +  E+    + PN  TY  +++    +G++D
Sbjct: 305 SSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVD 364

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +++ M   G   + + Y  L+
Sbjct: 365 IALEVLKMMERDGCQPNAWTYNSLM 389



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 18/177 (10%)

Query: 44  YNTVVTS------LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           YNT++ S      LT+  R+F L      ++  G++P     ++L++G  +   L+   +
Sbjct: 71  YNTMIKSYCKEGDLTTAHRYFRL------LLEGGLEPETFTCNALVLGYCRTGELRKACW 124

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               M   G   +   Y+Y I + G C  K   +A+ +F  MK+    PN + +  L++ 
Sbjct: 125 LFLMMPLMGCQRN--EYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISG 182

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
              +G++     +   M   G       Y  +I  ++ K+ R +D A KI EL+E++
Sbjct: 183 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS-KLGRMND-ALKIKELMEKN 237


>gi|168018631|ref|XP_001761849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686904|gb|EDQ73290.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 892

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++ S           D+ D+M   G + +   F+  I    +    ++ F  +  M 
Sbjct: 405 FNILIDSCCKHGHVSWGLDLLDEMQQRGTKLSPYAFNPFICDFARWGMYEEAFEMKAAMG 464

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P V  Y+ L++ C K  + +QA  +  EMK+  ++PN   Y  L+    +  +LD
Sbjct: 465 RLGVQPSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQVGIQPNAHCYNPLIMGFGSQARLD 524

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
               ++R+M +AG   D + Y+ LI A +  + R +D A ++ E
Sbjct: 525 RALEVLREMLSAGVQPDSYTYSMLIFACS--MVRNEDKAVELFE 566



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+QP    ++ LI+G    +RL        +M + G  PD   Y+ LI  C   +N D+A
Sbjct: 502 GIQPNAHCYNPLIMGFGSQARLDRALEVLREMLSAGVQPDSYTYSMLIFACSMVRNEDKA 561

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + +FEEM +  V+PN   Y  + +  A  G+L+    +V+++   G
Sbjct: 562 VELFEEMLQRGVQPNAGIYSAMASVFARCGKLERSIEMVKEIERRG 607



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GVQP+   + +L+   +K   ++  +    +MK  G  P+   YN LI   G     D+A
Sbjct: 467 GVQPSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQVGIQPNAHCYNPLIMGFGSQARLDRA 526

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL--I 188
           + +  EM    V+P+  TY  L+ AC+     D    +  +M   G   +   Y+ +  +
Sbjct: 527 LEVLREMLSAGVQPDSYTYSMLIFACSMVRNEDKAVELFEEMLQRGVQPNAGIYSAMASV 586

Query: 189 TAHTNKIPRADDTATKI 205
            A   K+ R+ +   +I
Sbjct: 587 FARCGKLERSIEMVKEI 603



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 63/151 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN ++    SQ R     +V  +M+  GVQP    +  LI                
Sbjct: 506 NAHCYNPLIMGFGSQARLDRALEVLREMLSAGVQPDSYTYSMLIFACSMVRNEDKAVELF 565

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G  P+  +Y+ + SV  +C   +++I + +E+++       +    +L   + A
Sbjct: 566 EEMLQRGVQPNAGIYSAMASVFARCGKLERSIEMVKEIERRGEVVGTKAKSAILAGLSLA 625

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+L    A+   +   GA  + +    L+ A
Sbjct: 626 GRLGEALALYGALKREGAFPEAYAAGILLVA 656



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 36/146 (24%)

Query: 79  FHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           F S I+G+ K  +L++T   +RD  +         V+N LI  C K  +    + + +EM
Sbjct: 369 FVSYILGSSKAKKLEETLGLWRDVEEQCRINAPPEVFNILIDSCCKHGHVSWGLDLLDEM 428

Query: 138 KK----------------------YE-------------VKPNGQTYVCLLNACAAAGQL 162
           ++                      YE             V+P+  TY  L+N C   G +
Sbjct: 429 QQRGTKLSPYAFNPFICDFARWGMYEEAFEMKAAMGRLGVQPSVVTYSTLVNCCVKLGDM 488

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +  Y ++ +M   G   +  CY  LI
Sbjct: 489 EQAYNLLAEMKQVGIQPNAHCYNPLI 514


>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
           chloroplastic-like [Cucumis sativus]
          Length = 608

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++ +M   G       + SLI    K  RL+D      +MK  G  P+V +YN L+ + 
Sbjct: 421 DIFGEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMH 480

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK KN  Q  ++++EMK+ ++ P+  +Y  +++A   A + +      R+    G  +DK
Sbjct: 481 GKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDK 540

Query: 182 FCYAGLITAHTNKIPRADD 200
             + G++    +K  R D+
Sbjct: 541 -AFGGIMVGVFSKTSRVDE 558


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K +R++      ++M
Sbjct: 340 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 399

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI   GK K  D A  +F+E+K+     + + Y  ++     AG+L
Sbjct: 400 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRL 459

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
           D    +  +M   G   D + Y  L++  A T  +  A  T  ++ E
Sbjct: 460 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 506



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 3/181 (1%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           A  YN+++  L  + ++  +  +Y++M  +G   P    + +LI    K  R        
Sbjct: 161 AQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLL 220

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  G  P   +Y  LI++  K  ++  A+ +FEEM+    +P+  TY  L+     A
Sbjct: 221 NEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 280

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G++D  Y    +M   G   D      +I     K  R DD A K+ + +E  +   SV 
Sbjct: 281 GRIDEAYHFFCEMQREGCRPDTVFMNNMIN-FLGKAGRLDD-AMKLFQEMETLRCIPSVV 338

Query: 220 T 220
           T
Sbjct: 339 T 339



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 84/180 (46%), Gaps = 2/180 (1%)

Query: 13  SVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           S+  ALG+  R+ +     +E      +++A  Y  ++  L    R     +++D+M   
Sbjct: 413 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 472

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P    +++L+ G  +   L +      +M+ +G +PD+  YN +++   K     +A
Sbjct: 473 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 532

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +   MK+  V+P+  +Y  +L A + AG  +    ++++M   G   D   Y+ ++ A
Sbjct: 533 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEA 592



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M     +P    +  LI G  K  R+ + + F  +M+  G  PD    N +I+  G
Sbjct: 254 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLG 313

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIVRDMTAAGAGLDK 181
           K    D A+++F+EM+     P+  TY  ++ A   +  +   V +    M  +G     
Sbjct: 314 KAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 373

Query: 182 FCYAGLIT--AHTNKIPRA 198
           F Y+ LI     TN++ +A
Sbjct: 374 FTYSILIDGFCKTNRMEKA 392



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 70/161 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +    + Y +++ +L   +R+ L  +++ ++  +    +  ++  +I    K 
Sbjct: 397 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKA 456

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D     D+M   G  PDV  YN L+S   +    D+A+     M+++   P+  +Y
Sbjct: 457 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 516

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +LN  A  G       ++ +M  +    D   Y  ++ A
Sbjct: 517 NIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGA 557



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           + +M  +G +P     +++I    K  RL D      +M+    +P V  YN +I    +
Sbjct: 290 FCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFE 349

Query: 124 CKN-SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
            K+ + +    FE MK+  + P+  TY  L++      +++    ++ +M   G      
Sbjct: 350 SKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPA 409

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            Y  LI A   K  R  D A ++ + ++++ G SS
Sbjct: 410 AYCSLIDA-LGKAKRY-DLACELFQELKENCGSSS 442


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAI 131
           +P    +++LI G +K ++L++     D+MK+ GFLPDV  YN +I S C + K  D A+
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGK-LDLAL 193

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            IFEE+ K   +P   TY  L+ A    G +D    ++ +M + G   D   Y  +I
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAII 250



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +  +   YN ++ S  S+ +  L  +++++++ D  +PT   +  LI  T+    +  
Sbjct: 167 RGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDV 226

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCL 152
                D+M + G  PD   YN +I   G CK    D+A  +   +     KP+  TY  L
Sbjct: 227 AMKLLDEMLSKGLEPDTLTYNAIIR--GMCKEMMVDKAFELLRSLSSRGCKPDIITYNIL 284

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           L    + G+      ++ +M + G   +   ++ LI
Sbjct: 285 LRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILI 320



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++P    +  LI G  +  RL     F + M ++G LPD+  YN +++   +   +DQA
Sbjct: 343 GLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQA 402

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +FE++ +    PN  +Y  L +A  ++G       ++  +   G   D+  Y  LI+ 
Sbjct: 403 LEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISC 462



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 64/159 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  + N       Y  ++ +        +   + D+M+  G++P    ++++I G  K 
Sbjct: 197 EELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKE 256

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   F     + + G  PD+  YN L+          +  ++  EM     KPN  T+
Sbjct: 257 MMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTH 316

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+      G+++    ++R M   G   D +CY  LI
Sbjct: 317 SILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLI 355



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 55/121 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S YNT+ ++L S    +   ++   ++  G+ P    ++SLI    +   + +     
Sbjct: 417 NVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELL 476

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M++  + P+V  YN ++    K   ++ AI +   M +   +PN  TY+ L+     +
Sbjct: 477 VDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFS 536

Query: 160 G 160
           G
Sbjct: 537 G 537



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 3/178 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++     + R  L  +  + M+ DG  P    +++++ G  +  +        +++ 
Sbjct: 351 YDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLD 410

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V+ YN L S      +  +A+ +  ++    + P+  TY  L++     G +D
Sbjct: 411 EVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVD 470

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               ++ DM +     +   Y  +I     K+ RA+D    +  + E  KG    ET+
Sbjct: 471 EAIELLVDMQSGRYRPNVVSY-NIILLGLCKVNRANDAIEVLAAMTE--KGCQPNETT 525


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L    R     +++  M  +   P    ++++I+G     + ++ +   DQ+K
Sbjct: 290 YTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLK 349

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P V  +N +++  GK +  D+A+ +FE MKK + +PN  TY  +++    AG+++
Sbjct: 350 ERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVE 408

Query: 164 PVYAIVRDMTAAG 176
             Y I  +M  AG
Sbjct: 409 EAYMIRDEMEHAG 421



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           TS+      ++ +A +A  YN VV       +     +V ++M +  V PT   + S+I 
Sbjct: 585 TSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIID 644

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G  K  RL + +   ++ K+ G   +V VY+ LI   GK    D+A  I EEM K  + P
Sbjct: 645 GLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 704

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           N  T+  L++A   A +++      + M       + + Y+ LI
Sbjct: 705 NVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILI 748



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 10/278 (3%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R +++D+   G  P    +  LI G  K  + ++T      MK  GF  D   YN ++  
Sbjct: 551 RAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVD- 609

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK+   D+A  + EEMK   V P   TY  +++  A   +LD  Y +  +  + G  
Sbjct: 610 -GFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIE 668

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
           L+   Y+ LI     K+ R D+    + E+++  KG +    + N+    M  + K E  
Sbjct: 669 LNVIVYSSLIDGF-GKVGRIDEAYLILEEMMK--KGLTPNVYTWNSL---MDALVKAEEI 722

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
           N     +   +    S     Y +  +    ++         + ++K    P+V      
Sbjct: 723 NEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTM 782

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           I      G+I +   +FE +  +   P A  +  L+EG
Sbjct: 783 IAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEG 820



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   R    +   +N+++T L  +R+      +++ M  D  +P    ++ +I      
Sbjct: 346 DQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMA 404

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++++ +  RD+M+  G  P++   N ++    K K  + A  +FE   +    PN  TY
Sbjct: 405 GKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTY 464

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++     G +D  Y +  +M   G   +   Y  LI
Sbjct: 465 CSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLI 503



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 69/159 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +      + Y +++  L    R      ++++    G++    ++ SLI G  K 
Sbjct: 625 EEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 684

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + +   ++M   G  P+V  +N L+    K +  ++A+  F+ MK+ +  PN  TY
Sbjct: 685 GRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTY 744

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+N      + +  +   ++M   G   +   Y  +I
Sbjct: 745 SILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMI 783



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 64/150 (42%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S Y  ++ ++   R+     ++   M   G +    LF +L+    +  R++      D+
Sbjct: 183 SAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDE 242

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +K +   PD+ +YN  I   GK  N D A + F E+K   +KP+  +Y  ++     AG+
Sbjct: 243 VKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGR 302

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           L     +   M    A    + Y  +I  +
Sbjct: 303 LSEAEELFGQMETERAVPCAYAYNTMIMGY 332



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/277 (19%), Positives = 111/277 (40%), Gaps = 12/277 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  LT   +      ++  M   G       +++++ G  K  +L   +   ++MK
Sbjct: 569 YSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK 628

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P VA Y  +I    K    D+A  +FEE K   ++ N   Y  L++     G++D
Sbjct: 629 VKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRID 688

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y I+ +M   G   + + +  L+ A           A +I E +   +    ++ S N
Sbjct: 689 EAYLILEEMMKKGLTPNVYTWNSLMDALVK--------AEEINEALICFQSMKEMKCSPN 740

Query: 224 NAENEMM--GVSKEELYNLPTAEYVH-RRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                ++  G+ + + YN     +   ++ G +  ++T Y       A++ ++    +L 
Sbjct: 741 TYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVT-YTTMIAGLAKVGNITDACSLF 799

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           E  K +  +PD       I    H+      + VFE+
Sbjct: 800 ERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEE 836



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/386 (18%), Positives = 152/386 (39%), Gaps = 17/386 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  ++R    N+  Y +++  L  +        ++++M+  G      ++ SLI      
Sbjct: 450 ETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMH 509

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +D      +M   G  PD+ + N  +    K  + ++   IFE++K Y   P+ ++Y
Sbjct: 510 GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 569

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
             L++    AGQ     +I   M   G  LD   Y  ++     + K+    D A +++E
Sbjct: 570 SILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKL----DKAYEVLE 625

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            ++  +   +V T G+  +    G++K +  +     +   +   +   + VY       
Sbjct: 626 EMKVKRVPPTVATYGSIID----GLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGF 681

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            ++  +     +LE + K   +P+VY     +   + + +I+     F+     +  P  
Sbjct: 682 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNT 741

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
             Y+ L+ G        K     Q+    M  +   L P + +   ++A   K G  T A
Sbjct: 742 YTYSILINGLCRVQKYNKAFVFWQE----MQKQG--LVPNVVTYTTMIAGLAKVGNITDA 795

Query: 387 NYIWDLMQARKITPSLPAVEAYYNGL 412
             +++  +A   TP   +  A   G+
Sbjct: 796 CSLFERFKANGGTPDAASFNALIEGM 821



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L   +++      + +M   G+ P    + ++I G  K   + D     
Sbjct: 740 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLF 799

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++ KANG  PD A +N LI        + +A  +FEE +    + N +  + LL+A   A
Sbjct: 800 ERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKA 859

Query: 160 GQLDPVYAI------VRDMTAAGAGLDKFCYAG 186
             L+    +      VR       GLD    AG
Sbjct: 860 ECLEQAAVVGFGENTVRHFFQWTEGLDLLLSAG 892



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    N   +N+++ +L            +  M      P    +  LI G  + 
Sbjct: 695 EEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRV 754

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +    F F  +M+  G +P+V  Y  +I+   K  N   A  +FE  K     P+  ++
Sbjct: 755 QKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASF 814

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGL 187
             L+   + A +    Y +  +    G  ++ K C + L
Sbjct: 815 NALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLL 853


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +      ++D+M+  G+ P    F +LI G  K   +        QM 
Sbjct: 215 YSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLVTYNALIY--GLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFEHRKMMIQENIRLDDVAYTALISG 361



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++     +    + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A ++F+EM +  + PN  
Sbjct: 191 GDLDEGFRLKSAMHASGVHPDVYTYSVLIN--GLCKESKMDDANKLFDEMLEKGLVPNSV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G +D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 249 TFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                       ++         + G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 309 --------SMXGLKPDKITYTTLIDGCCKEG--DLDTA-FEHRK-MMIQENIRLDDVAYT 356

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       I  +   GD+  G K+ ++   
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLK-PDTRTYTMIINEFCKKGDVWKGSKLLKEMQR 415

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 416 DGHVPSVVTYNVLMNG 431


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 121/311 (38%), Gaps = 42/311 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++TVV +L  + +     ++ D M+  GV+P    + +L+ G    S + +     D M 
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 328

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF PDV  Y  LI+   K    D+A+ +FEEM + E  P+ +TY  L++     G+L 
Sbjct: 329 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQ 388

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
              A+  +M A G   D   Y+ L+           D+  K   L E      ++E S  
Sbjct: 389 DAIALFHEMVARGQMPDLVTYSILL-----------DSLCKNCHLEEAMALLKAIEASNL 437

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
           N +                              + VY++         +++A   L   L
Sbjct: 438 NPD------------------------------IQVYNIIIDGMCRAGELEAARDLFSNL 467

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYT 342
                 P V+     I      G ++  +K+F +   ++  P    Y T+  G +    T
Sbjct: 468 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNET 527

Query: 343 PKGMQLAQDTL 353
            + +QL ++ L
Sbjct: 528 LRAIQLLEEML 538



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 120/302 (39%), Gaps = 16/302 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++ S     R      V   ++  G QP    F +LI G     ++ +     
Sbjct: 90  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 149

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   GF P+V  Y  LI+   K  N+  AIR+   M++   +P+   Y  ++++    
Sbjct: 150 DKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 209

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV- 218
            Q+   + +   M   G   D F Y  L+ A  N         T ++  +  SK    V 
Sbjct: 210 RQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKH--VTTLLNQMVNSKILPDVV 267

Query: 219 --ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
              T  +    E       E+ ++     + R  G    ++T   +    C + +  +A+
Sbjct: 268 IFSTVVDALCKEGKVTEAHEIVDM----MIQR--GVEPDVVTYTTLMDGHCLQSEMDEAV 321

Query: 277 ETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           + + +M+ +   +PDV  Y  + N  C +H   ID    +FE+    E  P  + Y TL+
Sbjct: 322 K-VFDMMVRKGFAPDVISYTTLINGYCKIHK--IDKAMYLFEEMCRKEWIPDTKTYNTLM 378

Query: 335 EG 336
            G
Sbjct: 379 HG 380



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
            R+ +A +   Y T++       +      ++++M      P    +++L+ G     RL
Sbjct: 328 VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRL 387

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           QD      +M A G +PD+  Y+ L+ S+C  C + ++A+ + + ++   + P+ Q Y  
Sbjct: 388 QDAIALFHEMVARGQMPDLVTYSILLDSLCKNC-HLEEAMALLKAIEASNLNPDIQVYNI 446

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAG 176
           +++    AG+L+    +  ++++ G
Sbjct: 447 IIDGMCRAGELEAARDLFSNLSSKG 471



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 17/195 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+ +  +   YNT++  L    R      ++ +M+  G  P    +  L+    K 
Sbjct: 360 EEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 419

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKPNGQ 147
             L++       ++A+   PD+ VYN +I   G C+  + +A R +F  +    + P+  
Sbjct: 420 CHLEEAMALLKAIEASNLNPDIQVYNIIID--GMCRAGELEAARDLFSNLSSKGLHPSVW 477

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA---DDTATK 204
           TY  +++     G L+    +  +M       D   Y        N I R    ++   +
Sbjct: 478 TYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTY--------NTIARGFLQNNETLR 529

Query: 205 IIELVEQ--SKGWSS 217
            I+L+E+  ++G+S+
Sbjct: 530 AIQLLEEMLARGFSA 544



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 64/334 (19%), Positives = 135/334 (40%), Gaps = 23/334 (6%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAI 131
           QP   ++ S+I    K  ++ + F    QM   G  PD+  Y  L+ ++C  C+      
Sbjct: 193 QPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCE-WKHVT 251

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +  +M   ++ P+   +  +++A    G++   + IV  M   G   D   Y  L+  H
Sbjct: 252 TLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGH 311

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR--- 248
              +    D A K+ +++ + KG++    S     N   G  K  ++ +  A Y+     
Sbjct: 312 C--LQSEMDEAVKVFDMMVR-KGFAPDVISYTTLIN---GYCK--IHKIDKAMYLFEEMC 363

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSG 306
           R  ++    T Y+   H    +  +Q    L   +    + PD+  Y ++ +  C   + 
Sbjct: 364 RKEWIPDTKT-YNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLC--KNC 420

Query: 307 DIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPR 366
            ++    + +    S   P  ++Y  +++G         ++ A+D   N++S+   L P 
Sbjct: 421 HLEEAMALLKAIEASNLNPDIQVYNIIIDGMC---RAGELEAARDLFSNLSSKG--LHPS 475

Query: 367 MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
           + +  +++    K G    AN ++  M     +P
Sbjct: 476 VWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSP 509


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V ++M   GV     +F++L+ G  +   + + +    +M+  GF PD+  Y   ++ C 
Sbjct: 533 VTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACC 592

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  +  +A    EEMK+ +++PN QTY  L++   +    +       +M AAG   DK 
Sbjct: 593 KAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIPDKP 652

Query: 183 CYAGLITAHTNKIPRADDT 201
            Y  ++T+  +K   A +T
Sbjct: 653 LYYCIVTSLLSKAAIARET 671



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/304 (17%), Positives = 119/304 (39%), Gaps = 20/304 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + Y+ +V        F     V++DM   G++P    ++ L+    K  ++       
Sbjct: 335 NRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLL 394

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK  G  P +  Y  +I    K  +   A +   EMK    +PN  TY  +++     
Sbjct: 395 GRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQL 454

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSK--GW 215
           GQ+D   +++ +M  AG   +   Y  L+   A   +I  A     ++ E+ ++     +
Sbjct: 455 GQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISY 514

Query: 216 SSVETSGNNA---ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
           +S+  +   A   +N +    +     +P   Y             +++      A+  D
Sbjct: 515 ASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNY-------------IFNTLLDGWAQRGD 561

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           +     +++ ++++  +PD++     +     +GD+    +  E+    +  P  + Y  
Sbjct: 562 MWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTI 621

Query: 333 LVEG 336
           L+ G
Sbjct: 622 LIHG 625



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 1/168 (0%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  Y  ++   T   +     +   +M   G+   R+ +  L+ G ++     + F   +
Sbjct: 301 AVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFE 360

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            M   G  PD   YN L+    K +   +AI++   MK     P  QTY+ +++     G
Sbjct: 361 DMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTG 420

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
            +   Y  V +M  AG   +   Y  +I  +  ++ + D  A+ I E+
Sbjct: 421 DVRMAYKTVSEMKLAGCRPNATTY-NVIMHNLVQLGQIDRAASVIDEM 467



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 7/170 (4%)

Query: 28  GAEEYARR----NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
            AE++ +R    N+ +N + Y++++ +            +  DM   G++ T  L++ L+
Sbjct: 211 AAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILM 270

Query: 84  VGTMKGSRLQDTFFFRDQMKA---NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
            G  +            ++KA    G  P    Y  LI++  K     +A+   +EMK  
Sbjct: 271 DGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQ 330

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +  N  TY  L++     G     +++  DM+ AG   D   Y  L+ A
Sbjct: 331 GITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKA 380



 Score = 41.6 bits (96), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           ++ S+I    K   ++        M+  G    + +YN L+    +C    Q + +F ++
Sbjct: 230 IYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKL 289

Query: 138 KK---YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           K      + P   TY CL+N     G++       ++M A G  L++  Y+ L+  + 
Sbjct: 290 KARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYV 347


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 118/299 (39%), Gaps = 10/299 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T++  +   +      D+Y +M+  G+ P    + +LI G     +L+D     
Sbjct: 196 NVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLF 255

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++M      PDV  +N L+   G CK+    +   +F  M K  +KPN  TY  L++   
Sbjct: 256 NKMILENIKPDVYTFNILVD--GFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 313

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
              +++   +I+  M+  G   D   Y  LI     KI + D+      E+    K    
Sbjct: 314 LVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFC-KIKKVDEAMNLFKEM--HHKHIIP 370

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
              + N+  + +  + K   Y L   + +H RG  +   +  Y     A  +   V    
Sbjct: 371 DVVTYNSLIDGLCKLGKIS-YALKLVDEMHDRG--VPPDIITYSSILDALCKNHQVDKAI 427

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            LL  LK     P++Y     I      G +++ H +FED +          Y  ++ G
Sbjct: 428 ALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHG 486



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 70/162 (43%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           ++R    +   YN ++      ++     +++ +M    + P    ++SLI G  K  ++
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKI 388

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                  D+M   G  PD+  Y+ ++    K    D+AI +  ++K   ++PN  TY  L
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTIL 448

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           ++     G+L+  + I  D+   G  +    Y  +I    NK
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNK 490



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 35/196 (17%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            E   +  + N   Y+ +++   +  +     D+++ M+L+ ++P    F+ L+ G  K 
Sbjct: 221 SEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKD 280

Query: 90  SRLQD--TFF---FRDQMKAN------------------------------GFLPDVAVY 114
            ++++  T F    +  +K N                              G  PD+  Y
Sbjct: 281 GKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSY 340

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N LI    K K  D+A+ +F+EM    + P+  TY  L++     G++     +V +M  
Sbjct: 341 NILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHD 400

Query: 175 AGAGLDKFCYAGLITA 190
            G   D   Y+ ++ A
Sbjct: 401 RGVPPDIITYSSILDA 416



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH------------- 80
           R+N    A E+N ++ SL   + +  +  +   M  +G+ P   LFH             
Sbjct: 69  RQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPV--LFHFQHPHQLMGYHPN 126

Query: 81  -----SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
                +LI G     ++     F D + A GF  D   Y  LI    K   +  A+ +  
Sbjct: 127 TITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLR 186

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +    V+PN   Y  +++       ++  + +  +M + G   +   Y+ LI+ 
Sbjct: 187 RVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 10/186 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   ++   +   YN+++  L    +      + D+M   GV P    + S++    K 
Sbjct: 361 KEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKN 420

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM--KKYEVKPN 145
            ++        ++K  G  P++  Y  LI   G CK    + A  IFE++  K Y +  N
Sbjct: 421 HQVDKAIALLTKLKDQGIRPNMYTYTILID--GLCKGGRLEDAHNIFEDLLVKGYNITVN 478

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  +++     G  D   A++  M       D   Y  +I +  +K    +D A K+
Sbjct: 479 --TYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDK--DENDKAEKL 534

Query: 206 IELVEQ 211
            E++ +
Sbjct: 535 REMITR 540


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNTV+ +L  S+     +   +D M  DGV P+   +  LI G  K +R++      ++M
Sbjct: 376 YNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEM 435

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI+  GK K  + A  +F+E+K+     + + Y  ++      G+L
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                +  +M   G+G D + Y  L++ 
Sbjct: 496 SEAVDLFNEMKNQGSGPDVYAYNALMSG 523



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 15/237 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++++M   G  PT   +  LI G  K  R+++ +     M  +G  PDV   N L+++ 
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNIL 348

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIVRDMTAAGAGLD 180
           GK    ++   +F EM  +   P   +Y  ++ A   +   +  V +    M A G    
Sbjct: 349 GKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPS 408

Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSKEE 236
           +F Y+ LI  +  TN++ +A       + L+E+   KG+     +  +  N +    + E
Sbjct: 409 EFTYSILIDGYCKTNRVEKA-------LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
             N    E     G   SR+  V    F  C +L   +A++   EM K     PDVY
Sbjct: 462 AANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS--EAVDLFNEM-KNQGSGPDVY 515



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 34  RRNYANNASE-YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + N+ N +S  Y  ++       +     D++++M   G  P    +++L+ G +K   +
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMV 530

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            +      +M+ NG   D+  +N +++   +     +AI +FE MK   +KP+G TY  L
Sbjct: 531 NEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTL 590

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           L   A AG  +    ++R+M   G   D   Y+ ++ A  N     DD ++
Sbjct: 591 LGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNMDHEKDDVSS 641



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 12/191 (6%)

Query: 2   RLLQSIYRH-HKSVG--------GALGRRFFVTSAGAEEYAR--RNYANNASEYNTVVTS 50
           R +Q + R+ + SVG         ALGR   V+ A +  Y    R     +S YN+V+  
Sbjct: 147 RTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILM 206

Query: 51  LTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP 109
           L  + +   + +VY +M  +G   P    + +LI    K  R        D+MK N   P
Sbjct: 207 LMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQP 266

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
              +Y  L+ +  K    ++A+ +FEEMK+    P   TY  L+     AG+++  Y + 
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLY 326

Query: 170 RDMTAAGAGLD 180
           ++M   G   D
Sbjct: 327 KNMLTDGLTPD 337



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 14/267 (5%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG-FLPDVAVYNYLISVCGKCKNSDQAI 131
           +PT   ++S+I+  M+  + +       +M   G   PD   Y+ LIS   K   +D AI
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT-- 189
           R+F+EMK   ++P  + Y  LL      G+++    +  +M  AG     + Y  LI   
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGL 313

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHR 248
               ++  A D    ++     + G +      NN  N +  V + EEL N+       R
Sbjct: 314 GKAGRVEEAYDLYKNML-----TDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWR 368

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
               +    TV    F + A + +V    +  + +K D  SP  +     I  Y  +  +
Sbjct: 369 CTPTVVSYNTVIKALFESKAPVSEVS---SWFDKMKADGVSPSEFTYSILIDGYCKTNRV 425

Query: 309 DNGHKVFEDYICSEKFPPA-ELYATLV 334
           +    + E+ +  + FPP    Y +L+
Sbjct: 426 EKALLLLEE-MDEKGFPPCPAAYCSLI 451



 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 1/162 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R   +     Y  ++  L    R     D+Y +M+ DG+ P     ++L+    K 
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKV 351

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQT 148
            RL++     ++M      P V  YN +I    + K    +    F++MK   V P+  T
Sbjct: 352 GRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFT 411

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  L++      +++    ++ +M   G       Y  LI A
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 453


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 45/309 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R     + + YN ++ +            + + M  + +QP+   F  +I G    
Sbjct: 502 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 561

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      D M+ +G +P V  YN LI    +     +A+ + ++M    + PN  TY
Sbjct: 562 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 621

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++   AA+G +   +     +  +G  LD + Y  L+ A                   
Sbjct: 622 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK---------------- 665

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF--LSRLLTVYHVAFHAC 267
                      SG                 + +A  V R   F  + R   +Y++     
Sbjct: 666 -----------SGR----------------MQSALAVTREMSFQKIPRNTFIYNILIDGW 698

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
           A   DV   E L++ +K+D   P+++     I     +GD+    KV E+ +     P  
Sbjct: 699 ARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNV 758

Query: 328 ELYATLVEG 336
           + Y TL++G
Sbjct: 759 KTYTTLIKG 767



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 139/350 (39%), Gaps = 19/350 (5%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M  DG+    D++HS++ G              +++K  GF P +  Y  L+++  K  
Sbjct: 398 EMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIG 457

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+ I +EM+   +K N +TY  L+N           +AI  +M  +G   D+  Y 
Sbjct: 458 KVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYN 517

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM---GVSKEELYNLPT 242
            LI A         D A  I+E +++ +   S     N A   ++    V+ +    L T
Sbjct: 518 LLIEAFCKM--GNMDRAICILEKMQKERMQPS-----NRAFRPIIEGYAVAGDMKSALDT 570

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            + + RR G +  ++T Y+   H       VQ   ++L+ +     +P+ +     +R Y
Sbjct: 571 LDLM-RRSGCVPTVMT-YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 628

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQLAQDTLVNMNSRNI 361
             SGDI    + F     S       +Y TL+      G     + + ++       RN 
Sbjct: 629 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 688

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           F+        +L+    + G    A  +   M+   + P++    +Y N 
Sbjct: 689 FIYN------ILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINA 732



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 8/211 (3%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A   E + +    N   YN ++     +   +   D+   M  DGV P    + S I   
Sbjct: 674 AVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC 733

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q      ++M   G  P+V  Y  LI    +    D+A++ FEEMK   +KP+ 
Sbjct: 734 CKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDE 793

Query: 147 QTYVCLLNACAAAGQL------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +Y CL+ +  +   +        + ++ R+M+     +D    A   +   +KI R   
Sbjct: 794 ASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVD-LRTAVHWSRWLHKIERTGG 852

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMG 231
             T+ ++ +     W+S+E  G  + +  MG
Sbjct: 853 ALTEALQRI-FPPDWNSLEFLGEPSSSISMG 882



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +     R      V  +M    +     +++ LI G  +   + +      QMK
Sbjct: 656 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 715

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P++  Y   I+ C K  +  +A ++ EEM    +KPN +TY  L+   A     D
Sbjct: 716 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 775

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                  +M  AG   D+  Y  L+T+
Sbjct: 776 RALKCFEEMKLAGLKPDEASYHCLVTS 802



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 41/171 (23%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  +++M   G++P   +F SL+        ++      ++MK+ G    +  Y+ LIS 
Sbjct: 317 RATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISG 376

Query: 121 CGKCKNSDQA-----------------------------------------IRIFEEMKK 139
             K  +S Q+                                         + +FE +K+
Sbjct: 377 FAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE 436

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              KP+  +Y CLLN     G++    +I ++M + G   +   Y+ LI  
Sbjct: 437 CGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLING 487


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 41/291 (14%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V D M   GV P    + ++I    K  R  D       MK  G  P+V  YN ++++ G
Sbjct: 378 VIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLG 437

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K   ++  I++  EMK     PN  T+  +L  C+  G+ + V  ++R+M   G   DK 
Sbjct: 438 KKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKD 497

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            +  LI+A+  +     D+A    E+V                                 
Sbjct: 498 TFNTLISAYA-RCGSEVDSAKMYGEMV--------------------------------- 523

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
                 + GF +  +T Y+   +A A   D +A E++++ ++     P+       + CY
Sbjct: 524 ------KSGF-TPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCY 576

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTL 353
             +G++    KV ++      FP   L  TLV         +GM+ A D L
Sbjct: 577 SKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQL 627



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 27  AGAEEYARRNY--------ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           AG E+ A R +        A N   YN+V+  L  + R   +  V  +M L+G  P R  
Sbjct: 404 AGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRAT 463

Query: 79  FHSLI-VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           +++++ V + +G         R +MK  GF PD   +N LIS   +C +   + +++ EM
Sbjct: 464 WNTMLAVCSEEGKHNYVNKVLR-EMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEM 522

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            K    P   TY  LLNA A  G      ++++DM   G   ++  Y+ L+  ++
Sbjct: 523 VKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYS 577



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R +  + ++ D+M   G++       ++I    +   L +   F  ++K NG+ P    Y
Sbjct: 265 RSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTY 324

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N ++ V GK     +A+ I +EM+     P+  TY  L      AG LD   A++  MT+
Sbjct: 325 NSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTS 384

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            G   +   Y  +I A+  K  R DD A ++  L++
Sbjct: 385 KGVMPNAITYTTVIDAY-GKAGREDD-ALRLFSLMK 418



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 65/135 (48%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N + +NT++   + + +   +  V  +M   G +P +D F++LI    +     D+  
Sbjct: 458 APNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAK 517

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M  +GF P V  YN L++   +  +   A  + ++M+    KPN  +Y  LL+  +
Sbjct: 518 MYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYS 577

Query: 158 AAGQLDPVYAIVRDM 172
            AG +  +  + +++
Sbjct: 578 KAGNVKGIEKVEKEI 592



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +++YD      V P+  L  +L++   K   L+      DQ++  G+ PD+ V N ++S+
Sbjct: 590 KEIYDGH----VFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSM 645

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             + K   +A  +   + +  ++PN  TY CL++     G+      +++ +  +G   D
Sbjct: 646 FARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPD 705

Query: 181 KFCYAGLITAHTNK 194
              Y  +I     K
Sbjct: 706 VVSYNTVIKGFCRK 719


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E      A NA  YNT++  L   RR     +++D M L GV  +   +++LI G  K 
Sbjct: 427 KEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKN 486

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     DQM   G  PD   YN L++   +  + ++A  I + M     +P+  TY
Sbjct: 487 KRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTY 546

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+     AG++D    ++R +   G  L    Y  +I A
Sbjct: 547 GTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQA 587



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++++ +     F    ++   M+L    P    +++LI    K + ++        + 
Sbjct: 301 YNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILV 360

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G LPDV  +N LI      KN D A+ +FEEMK    KP+  TY  L+++     +L 
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++++M ++G   +   Y  LI
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLI 445



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 11/189 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    +   Y+ ++ SL  +RR      +  +M   G      ++++LI G  K 
Sbjct: 392 EEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKS 451

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            R++D     DQM+  G       YN LI   G CKN   ++A ++ ++M    +KP+  
Sbjct: 452 RRIEDAEEIFDQMELLGVSRSSVTYNTLID--GLCKNKRVEEASQLMDQMIMEGLKPDKF 509

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKI 205
           TY  LL      G ++    IV+ M + G   D F Y  LI      + RA   D A+K+
Sbjct: 510 TYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGG----LCRAGRVDVASKL 565

Query: 206 IELVEQSKG 214
           +  V Q KG
Sbjct: 566 LRSV-QMKG 573



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G  P +  F+SL+ G  +   + D     D M   GF PDV  YN LIS   K    ++
Sbjct: 257 EGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEK 316

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           AI I ++M   E  PN  TY  L++A     +++    + R + + G   D   +  LI 
Sbjct: 317 AIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQ 376

Query: 190 AHTNKIPRADDTATKIIE 207
                + +  D A ++ E
Sbjct: 377 GLC--LSKNQDIAMEMFE 392



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 2/159 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++  L   +   +  +++++M   G +P    +  LI       RL++      +M+
Sbjct: 371 FNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEME 430

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G   +  VYN LI    K +  + A  IF++M+   V  +  TY  L++      +++
Sbjct: 431 SSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVE 490

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADD 200
               ++  M   G   DKF Y  L+T       I +A D
Sbjct: 491 EASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGD 529



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 5/188 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ + T++ S T+      L  + ++ +  G +P  + ++  +   ++ ++L+      
Sbjct: 89  NATTFATLIQSFTNFHEIENLLKILENEL--GFKPDTNFYNIALNALVEDNKLKLVEMLH 146

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G + DV+ +N LI    K      AI + EEM  + +KP+  T+  L+      
Sbjct: 147 SKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEE 206

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G L+    + + M   G  L       L+     K  R ++    ++E+ E+  G+S  +
Sbjct: 207 GDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFC-KEGRVEEALRFVLEVSEE--GFSPDQ 263

Query: 220 TSGNNAEN 227
            + N+  N
Sbjct: 264 VTFNSLVN 271



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 42/216 (19%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L   +R      + D M+++G++P +  ++SL+    +   ++        M 
Sbjct: 476 YNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMA 535

Query: 104 ANGFLPDVAVYNYLISVCGKC-------------------------------------KN 126
           +NG  PD+  Y  LI   G C                                     K 
Sbjct: 536 SNGCEPDIFTYGTLIG--GLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKR 593

Query: 127 SDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           + + +R+F EM +    P+  T+ +     C   G +        +M   G  L +F   
Sbjct: 594 TKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGI-LPEFPSF 652

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           G +      +   +DT  ++I +V +    S  ETS
Sbjct: 653 GFLAEGLCSL-SMEDTLIELINMVMEKAQMSERETS 687


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +      ++D+M++  + P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + +EM    ++P+  TY  L++ C   G 
Sbjct: 275 SQSLLPDLITYNTLIY--GLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDTAFEHRKRMIQENIRLDDVAYTALISG 361



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 135/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK +  D A ++F+EM    + PNG 
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKENKMDDANKLFDEMLVKALVPNGV 248

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A+D   ++
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 309 -----SMKGLQPDKITYTTLID---GCCKEG--DLDTA-FEHRK-RMIQENIRLDDVAYT 356

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + V A + L EML    K PD       I  +   GD+  G K+ ++   
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLK-PDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 416 DGHVPSVVTYNVLMNG 431


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M L GV P    ++SLIV   KG + +        MK  G   D+  Y+  IS CG+   
Sbjct: 179 MSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQ 238

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            + ++ +  E K   + P+   Y   + ACA A Q D    ++++M +AG   D   +  
Sbjct: 239 WEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTS 298

Query: 187 LITAHTNKIPRADDTATKIIELVE 210
           LI A  +     D   T+ +E++E
Sbjct: 299 LIAALGH-----DGQWTQAVEILE 317



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK--GSRLQDTFF 97
           +A  YNT +++L    +    +++  +M   G++PT   ++S I    +  G + +    
Sbjct: 115 DAISYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVA 174

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M   G  PD   YN LI  CGK     QA+ + + MKK  +  +   Y   ++AC 
Sbjct: 175 LVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACG 234

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
            AGQ +    ++ +  + G   D   Y   +TA  +   R  D AT +++
Sbjct: 235 EAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQR--DKATFLLK 282



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 2/149 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+  +T+  +  R+     +  DM   GV+P     ++ I    +  + Q        M 
Sbjct: 49  YSAAITACANGGRWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMS 108

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA--AAGQ 161
             G  PD   YN  IS  G    S+QA  +  EM +  ++P   TY   + A A    GQ
Sbjct: 109 KAGLSPDAISYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQ 168

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                A+V+ M+ AG   D   Y  LI A
Sbjct: 169 WRQAVALVKHMSLAGVTPDSITYNSLIVA 197



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 1/121 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVCGKCKNSDQ 129
           G++P+ + +   +    KG R Q+      +M+ +  +  DV  Y+  I+ C       +
Sbjct: 5   GIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQE 64

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+ I  +M    V+PN  +    + A   AGQ     +I+R M+ AG   D   Y   I+
Sbjct: 65  AVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAIS 124

Query: 190 A 190
           A
Sbjct: 125 A 125



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           Q    LLR++ +D   D ++     + + I     G R Q+       M   G  P+V  
Sbjct: 27  QEALVLLREMEED---DEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPNVIS 83

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            N  I   G+      A+ I   M K  + P+  +Y   ++A   AGQ +    ++ +M+
Sbjct: 84  CNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSEMS 143



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 35/89 (39%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P    + + +      ++     F   +M + G  PD A +  LI+  G      QA
Sbjct: 253 GITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQA 312

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + I E M K     N   Y  L+ + A A
Sbjct: 313 VEILESMPKMGAPRNAMVYNALITSWANA 341


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 123/312 (39%), Gaps = 16/312 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R +   +    + ++ SL    +    RDV+D M + G  P    +  ++ G    
Sbjct: 313 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATK 372

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  PD+  +N LI     C   D+A+ IF EM+ + VKP+  TY
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 432

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++ A    G++D        M   G   DK+ Y  LI        + +A +    I E
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL---ISE 489

Query: 208 LVEQSKGWSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           ++        V  S   NN       +  + +++L     +H      S L+  Y     
Sbjct: 490 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY----- 544

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
            C   K  +A+     M+    +  D VY  + N  C +  G ID G  +F + +     
Sbjct: 545 -CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKI--GRIDEGLSLFREMLQKGIK 601

Query: 325 PPAELYATLVEG 336
           P   LY  +++G
Sbjct: 602 PSTILYNIIIDG 613



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 67/141 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +++++ +L    R    ++++D  +  G+ PT  ++  L+ G     +++      D M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+  VY  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 621

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
           P      +MT +G  ++K  Y
Sbjct: 622 PAKVKFHEMTESGIAMNKCTY 642



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 64/151 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+     +       D++ +M+  G+ P    + S++    K   +     F  QM 
Sbjct: 222 YSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV 281

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LP+   YN LI          +A+R+F+EM+++ + P+  T   L+ +    G++ 
Sbjct: 282 NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIK 341

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               +   M   G   + F Y  ++  +  K
Sbjct: 342 EARDVFDTMAMKGQNPNVFSYTIMLNGYATK 372



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   Y++VV +L   R           M+  GV P    +++LI G    
Sbjct: 243 KEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSST 302

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + ++      +M+ +  LPDV   + L+    K     +A  +F+ M      PN  +Y
Sbjct: 303 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSY 362

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +LN  A  G L  +  +   M   G   D + +  LI A+ N
Sbjct: 363 TIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYAN 406



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 6/209 (2%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PDV  Y+ +I    K  + ++A  +F+EM +  + P+  TY  +++A   A  +D   A 
Sbjct: 217 PDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENE 228
           +R M   G   + + Y  LI  +++   +  +      E+   S     V  S       
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSST-GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335

Query: 229 MMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288
             G  KE      T     +     S  + +   A   C  L D   M  L +++  D  
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGC--LVD---MTDLFDLMLGDGI 390

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           +PD+Y     I+ Y + G +D    +F +
Sbjct: 391 APDIYTFNVLIKAYANCGMLDKAMIIFNE 419


>gi|413946759|gb|AFW79408.1| hypothetical protein ZEAMMB73_086527 [Zea mays]
          Length = 865

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 34/213 (15%)

Query: 28  GAEEYARRNY----ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
           G  EYA++ +      N + +N++V   ++  +F    D+ ++M  + + P    ++ LI
Sbjct: 361 GRLEYAQKVFDTLELRNITTWNSLVAGYSNAGQFDHALDLVEEMKRNRLDPDITTWNGLI 420

Query: 84  VG-TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKY 140
            G +M G   Q     R QMKA G  P+V  +  LIS  G C N D   +   F EM+K 
Sbjct: 421 SGYSMNGRSSQAVLLLR-QMKAIGLTPNVVSWTSLIS--GSCHNGDYEDSFYFFNEMQKD 477

Query: 141 EVKPNGQTYVCLLNACA-----AAGQLDPVYAIV-----RDMTAAGAGLDKFCYAGLITA 190
            V+P+  T   LL ACA     A G+    +A+      RDM  A A +D +  +G +  
Sbjct: 478 HVQPSVVTMSVLLRACAGLALLAKGKELHCFALRRRAYDRDMVVATALIDMYSKSGNLA- 536

Query: 191 HTNKIPRADDTATKIIELVEQSK---GWSSVET 220
                     +AT+I E +++ K    W+++ T
Sbjct: 537 ----------SATRIFERIQEEKNLVSWNAMLT 559


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 20/282 (7%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK---ANGFLPDVAVYNYLI 118
           D++D M+   + PT   F+++I G  K  ++ +    RD++K     GF+P    YN ++
Sbjct: 560 DLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEA---RDKLKNFLEEGFIPSCMTYNSIV 616

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
               K  N D A+ ++ EM ++ V PN  TY  L+N    + ++D       +M   G  
Sbjct: 617 DGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 676

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKI-IELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
           LD   Y+ LI     +  R  ++A  +  EL+E       V  S N      M     +L
Sbjct: 677 LDVTAYSALIDGFCKR--RDMESAQDLFFELLE-------VGLSPNRIVYNSMISGFRDL 727

Query: 238 YNLPTAEYVHRR---GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
            N+  A   +++         L T   +      E + V A +  +EML K    PD+  
Sbjct: 728 NNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKG-IVPDIIT 786

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               +    + G ++N  K+ E+       P   +Y TL+ G
Sbjct: 787 FHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAG 828



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/358 (19%), Positives = 139/358 (38%), Gaps = 47/358 (13%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++T+L  +     LRD+Y+ M+L G+       H ++   +K  R+++   +  + K 
Sbjct: 229 NILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKE 288

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G   D   Y+ +I    K  NS+  + + EEMK+    P+  T+  ++ AC A G +  
Sbjct: 289 RGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVE 348

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
              +  +M   G  ++      L+                        KG+ +    GN 
Sbjct: 349 ALRLKEEMINCGKPMNLVVATSLM------------------------KGYCA---QGNL 381

Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
                   S   L+N  T +     G F +++   Y V    C    +++    L   +K
Sbjct: 382 D-------SALNLFNKITED-----GLFPNKV--TYSVLIEGCCNSGNIEKASELYTQMK 427

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
            +   P V+ V   +R YL +   +   K+F++ +         +        M  +  K
Sbjct: 428 LNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAV------DCGVANIFTYNIMMSWLCK 481

Query: 345 GMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
           G ++ +   +  N  N  + P + S   ++    + G    A+ ++  M AR + P++
Sbjct: 482 GGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNV 539



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L  + R     D+Y +M+  G+ P    FH L+ G     +L++     ++M 
Sbjct: 752 YTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMD 811

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                P V +YN LI+   +  N  +A  + +EM    + P+  TY  L+N 
Sbjct: 812 RKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 863



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 107/297 (36%), Gaps = 41/297 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++V     +        VY +M   GV P    + SLI G  K +R+      RD+M+
Sbjct: 612 YNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMR 671

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   DV  Y+ LI    K ++ + A  +F E+ +  + PN   Y  +++         
Sbjct: 672 EKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG-------- 723

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                 RD+    A L    Y  +I    ++IP    T T +I+                
Sbjct: 724 -----FRDLNNMEAAL--VWYKKMI---NDRIPCDLGTYTTLID---------------- 757

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                  G+ KE      +  Y+      +   +  +HV  +       ++    +LE +
Sbjct: 758 -------GLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEM 810

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            +   +P V I    I  Y   G++     + ++ +     P    Y  L+ G   G
Sbjct: 811 DRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKG 867



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPN 145
           KG ++ +     D M   G +P+V  YN +I   G C+  N D A  +F +M   ++KPN
Sbjct: 481 KGGKMDEACSLLDNMVNQGMVPNVVSYNDMI--LGHCRKGNMDMASSVFSDMLARDLKPN 538

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  L++     G  +    +   M +       F +  +I     K+ +  +   K+
Sbjct: 539 VVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLC-KVGQMSEARDKL 597

Query: 206 IELVEQ 211
              +E+
Sbjct: 598 KNFLEE 603



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFF 98
           N   YN +++ L    +      + D+M+  G+ P    ++ +I+G   KG+    +  F
Sbjct: 468 NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVF 527

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D M A    P+V  Y+ LI    K  +S++A+ +F++M    + P   T+  ++N    
Sbjct: 528 SD-MLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCK 586

Query: 159 AGQL 162
            GQ+
Sbjct: 587 VGQM 590



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 8/182 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTF 96
           N   Y +++       R  L     D+M   G++     + +LI G  K   +   QD F
Sbjct: 643 NVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF 702

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           F   ++   G  P+  VYN +IS      N + A+  +++M    +  +  TY  L++  
Sbjct: 703 F---ELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGL 759

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
              G+L     +  +M + G   D   +  L+    NK     + A KI+E +++     
Sbjct: 760 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNK--GQLENARKILEEMDRKNMTP 817

Query: 217 SV 218
           SV
Sbjct: 818 SV 819



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 67/162 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    + + Y+ ++     +R     +D++ +++  G+ P R +++S+I G    
Sbjct: 668 DEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDL 727

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           + ++    +  +M  +    D+  Y  LI    K      A  ++ EM    + P+  T+
Sbjct: 728 NNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITF 787

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+N     GQL+    I+ +M           Y  LI  +
Sbjct: 788 HVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGY 829


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 129/296 (43%), Gaps = 22/296 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ +   +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M+A+G  PDV  ++ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTHSVLIN--GLCKESKMDDANELFDEMLBNGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I R M +     D   Y  LI     K  + +  D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEM 302

Query: 206 -IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVA 263
            ++ ++  K   +    GN  E            +L TA EY  R      RL    + A
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDXAYTA 351

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
             +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCKKGDVWTGSKLLKE 406



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMI 338

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G +
Sbjct: 339 KENIRLDDXAYTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 WTGSKLLKEMQRXG 411


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +R    N   +N VV  L    +     DV +DM + GV P    +++LI G  K  
Sbjct: 145 EMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMG 204

Query: 91  RLQDTF---FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           R+   +       +M A G  P+   YN LI    K +N   A+R+F EM++  ++PN  
Sbjct: 205 RIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVV 264

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAA 175
           TY  L+N   + G++D   A+   M ++
Sbjct: 265 TYNILINGLCSDGKVDEAVALRDQMVSS 292



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 18  LGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           +GR  + +   A  +E   +    N   YN ++              V+ +M   G++P 
Sbjct: 203 MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPN 262

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRI 133
              ++ LI G     ++ +    RDQM ++   P+V  +N LI+  G CKN   ++AI +
Sbjct: 263 VVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLIN--GFCKNKTVNEAINL 320

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           F +M+K  V PN  TY  L++A    G+++  +A+   M   G   +   Y  LI     
Sbjct: 321 FNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCR 380

Query: 194 K 194
           K
Sbjct: 381 K 381



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 4/154 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N ++      +      ++++DM   GV P    + +LI    K  R++D F   
Sbjct: 297 NVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALY 356

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           + M   G  P+V+ YN LI+  G C+  D   A  +  EM   ++  +  TY  L+++  
Sbjct: 357 NMMIDRGIFPEVSTYNCLIA--GLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLC 414

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             G+      ++ +M   G       Y  L+  +
Sbjct: 415 KKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGY 448



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 139/364 (38%), Gaps = 38/364 (10%)

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           + L+ G +K S   D  F   +M       +V  +N +++   K    ++A  + E+MK 
Sbjct: 124 NPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKV 183

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVY---AIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
           + V PN  TY  L++     G++  +Y   AI+++M A G   ++  Y  LI        
Sbjct: 184 WGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFC---- 239

Query: 197 RADDTATKIIELV--EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
             D+  +  + +    Q +G      + N   N +    K +       E V  R   +S
Sbjct: 240 -KDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVD-------EAVALRDQMVS 291

Query: 255 RLL----TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
             L      ++V  +   + K V     L   ++K    P+       I  Y   G +++
Sbjct: 292 SDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMED 351

Query: 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSD 370
              ++   I    FP    Y  L+     G   KG   A  +L+N       +S ++ +D
Sbjct: 352 AFALYNMMIDRGIFPEVSTYNCLIA----GLCRKGDVKAARSLMNE-----MVSKKLSAD 402

Query: 371 L----LLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVV 426
           +    +L+ +  K G    A  + D M  + + PS       YN L D      + R  +
Sbjct: 403 VVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPS----HVTYNTLMDGYCREGNLRAAL 458

Query: 427 VSRA 430
           + R 
Sbjct: 459 IVRT 462


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 117/266 (43%), Gaps = 24/266 (9%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V++ ++  G+ PT  ++++LI G  +   L+  F   +QMK+    PD   YN LI+ 
Sbjct: 354 KQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALING 413

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K +   +A  +  EM+K  V P+ +T+  L++A   AGQL+  + ++ DM   G   D
Sbjct: 414 LCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 473

Query: 181 KFCYAGLITA--HTNKIPRA----DDTATKIIELVEQSKGWSSVETS---GNNAENEMMG 231
              +  ++ A     KIP A    DD   K  ++   ++ ++S+  +     + E  ++ 
Sbjct: 474 VISFGSVVKAFCKNGKIPEAVAILDDMIYK--DVAPNAQVYNSIIDAYIESGDTEQALLL 531

Query: 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD 291
           V K             +  G  + ++T Y++          +   E L+  L+     PD
Sbjct: 532 VEK------------MKNSGVSASIVT-YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPD 578

Query: 292 VYIVMQNIRCYLHSGDIDNGHKVFED 317
           V      I    + GD D   ++ ++
Sbjct: 579 VVSYNTIISACCNKGDTDKALELLQE 604



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN V+  L    +      V+D+M+  GV P R  ++++I G +KG  L+  F  R
Sbjct: 193 DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLR 252

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P+V  YN L+S   +    D+   + +EM  + + P+G TY  L +     
Sbjct: 253 DQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRT 312

Query: 160 GQ 161
           G+
Sbjct: 313 GE 314



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 70/138 (50%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           ++ A NA  YN+++ +            + + M   GV  +   ++ L+ G  + S++ +
Sbjct: 503 KDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDE 562

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  ++  G  PDV  YN +IS C    ++D+A+ + +EM KY ++P  +T   L++
Sbjct: 563 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVS 622

Query: 155 ACAAAGQLDPVYAIVRDM 172
           A A+AG++  +  + + M
Sbjct: 623 ALASAGRVHDMECLYQQM 640



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R+   +   YN ++  L          D+  +M   GV P+ + F++LI      
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+  F     M+  G   DV  +  ++    K     +A+ I ++M   +V PN Q Y
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             +++A   +G  +    +V  M  +G
Sbjct: 513 NSIIDAYIESGDTEQALLLVEKMKNSG 539



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 5/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++ +  +  +      V  DM   G++     F S++    K  ++ +     D M 
Sbjct: 442 FNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI 501

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P+  VYN +I    +  +++QA+ + E+MK   V  +  TY  LL     + Q+D
Sbjct: 502 YKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID 561

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
               ++  +   G   D   Y  +I+A  NK     DT  K +EL+++
Sbjct: 562 EAEELIYTLRNQGLRPDVVSYNTIISACCNK----GDT-DKALELLQE 604



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 122/327 (37%), Gaps = 51/327 (15%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E      A N   YNT++            F LRD    M+ DG +P    ++ L+ G 
Sbjct: 218 DEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRD---QMLHDGPKPNVVTYNVLLSGL 274

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYL----------------------------- 117
            +  R+ +T    D+M ++  LPD   Y+ L                             
Sbjct: 275 CRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGA 334

Query: 118 ----ISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
               I + G CK+    +A ++FE +    + P    Y  L+N       L   + I   
Sbjct: 335 YTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 394

Query: 172 MTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEM 229
           M +     D   Y  LI        + +A+D    ++  +E+S    SVET   N   + 
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAED----LVMEMEKSGVDPSVETF--NTLIDA 448

Query: 230 MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
            G +  +L    T     ++ G  S +++   V    C   K  +A+  L +M+ KD  +
Sbjct: 449 YGTAG-QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD-VA 506

Query: 290 PDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           P+  +    I  Y+ SGD +    + E
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQALLLVE 533


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 29/303 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +  +M   G++     +  LI G +      + F   ++M  +G  PD A+YN LI    
Sbjct: 474 ISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFC 533

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  N D+AIRI E+M+K  ++P+ + +  ++   A AG +     I+  M  +G      
Sbjct: 534 KMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVM 593

Query: 183 CYAGLITA--HTNKIPRADDTATKI-IELVEQSKGWSSVETSGNNAENEMM--------- 230
            Y  LI      N++ RA     K+ I  +  ++   ++   G  A  ++          
Sbjct: 594 TYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKI 653

Query: 231 --GVSKEELYNLPTAEYVHRRGGFLSRLLT---------------VYHVAFHACAELKDV 273
             G  K ++Y   T      + G +   L                VY++     A   DV
Sbjct: 654 KEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDV 713

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
                L++ +K+D   P+++     I     +GD+     V ++       P  + Y TL
Sbjct: 714 WEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTL 773

Query: 334 VEG 336
           ++G
Sbjct: 774 IKG 776



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 55/129 (42%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A   E + +  A N   YN ++     +   +   D+   M  DGV P    + S I   
Sbjct: 683 AVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINAC 742

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q      D+M   G  P++  Y  LI    +    D+A++ FEEMK   +KP+ 
Sbjct: 743 CKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDE 802

Query: 147 QTYVCLLNA 155
             Y CL+ +
Sbjct: 803 AAYHCLVTS 811



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 52/113 (46%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           +++ LI G  +   + +      QMK +G  P++  Y   I+ C K  +  +A  + +EM
Sbjct: 699 VYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEM 758

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +KPN +TY  L+   A A   D       +M  AG   D+  Y  L+T+
Sbjct: 759 SDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTS 811



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 60/127 (47%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D+ D M   G  PT   +++LI G ++ ++++      ++M   G  P+   Y  ++   
Sbjct: 578 DILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGY 637

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
               +  +A   F ++K+  +K +   Y  LL AC  +G++    A+ R+M++     + 
Sbjct: 638 AATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNT 697

Query: 182 FCYAGLI 188
           F Y  LI
Sbjct: 698 FVYNILI 704



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 18/177 (10%)

Query: 34  RRNYANNASEYNTVVTSLT-----SQRRFFLL-------------RDVYDDMMLDGVQPT 75
           RR   +   ++  VV++       S+R F L+             R  +++M   G++P 
Sbjct: 252 RRVVESRPEDWQAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPN 311

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
             +F SL+        ++      ++MKA G    +  Y+ LIS  GK  ++  A  +F+
Sbjct: 312 AFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFK 371

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           E K      NG  Y  +++A   +G +D    +V +M   G       Y  ++  +T
Sbjct: 372 EAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYT 428



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 8/255 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  +M  DG+    D +HS++ G       +      +++K   F P +  Y  LI++ 
Sbjct: 403 ELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLY 462

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +AI I +EM+   +K N +TY  L++           + I  +M  +G   D+
Sbjct: 463 VKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDR 522

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN-EMMGVSKEELYNL 240
             Y  LI A   K+    D A +I+E +++ +   S        E   + G  K  L  L
Sbjct: 523 AIYNLLIEAFC-KMGNM-DRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDIL 580

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
                + RR G    ++T Y+   H       V+   ++L  +     +P+ +     +R
Sbjct: 581 D----LMRRSGCAPTVMT-YNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMR 635

Query: 301 CYLHSGDIDNGHKVF 315
            Y  +GDI    + F
Sbjct: 636 GYAATGDIAKAFEYF 650


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 123/307 (40%), Gaps = 25/307 (8%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           +D+M+  G++PT   + SLI G     +L + F    +M   G  P+   +  LIS   +
Sbjct: 459 FDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFR 518

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
                 A R+F+EM +  + PN  TY  ++      G     + ++  M   G   D + 
Sbjct: 519 ANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYT 578

Query: 184 YAGLITA--HTNKIPRA----DDTATKIIELVEQSKGWSSVETSGNNAENEM---MGVSK 234
           Y  LI++   T ++  A    DD   +  +L E      S    G   E  +   +GV +
Sbjct: 579 YRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMC---YSALLHGYCKEGRLRDALGVCR 635

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           E +          +RG  +   L  Y V      + +D  A+  LL+ +   R  PD  I
Sbjct: 636 EMV----------KRG--VDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVI 683

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV-EGAMFGYTPKGMQLAQDTL 353
               I  Y  +G +     +++  I     P    Y TL+ E    G   K   L ++ L
Sbjct: 684 YTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEML 743

Query: 354 VNMNSRN 360
           V+ ++ N
Sbjct: 744 VSNSTPN 750



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 2/153 (1%)

Query: 41  ASE--YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           ASE  Y T+V  L   + F +   V D+M+  G  PT     SL+ G  +  ++ D F  
Sbjct: 294 ASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDL 353

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            +++K  G +P + VYN LI+   K    D+A  +F+EM +  +  N  TY  L+++   
Sbjct: 354 VNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCR 413

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            G+LD     +  M  AG  +  + Y  LI  H
Sbjct: 414 RGKLDTAIHFLGKMIMAGIKITVYPYNSLINGH 446



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            E   +  A N   + T++++L    R      ++D+M+   + P    ++ +I G  K 
Sbjct: 495 HEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKE 554

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
                 F   +QM   G +PD   Y  LIS         +A +  +++ +   K N   Y
Sbjct: 555 GNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCY 614

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             LL+     G+L     + R+M   G  +D  CYA LI
Sbjct: 615 SALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLI 653



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%)

Query: 68  MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
           ML G+      ++ L+ G  K  R+++     D+M  N   PD   Y+ +I  C +  N 
Sbjct: 777 MLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNL 836

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           D AI  ++ M    +KP+   Y  L+  C  AG+L   + +  DM   G 
Sbjct: 837 DGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGV 886



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 141/404 (34%), Gaps = 81/404 (20%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ SL    +F     ++ +M   G+      +  LI    +  +L     F  +M 
Sbjct: 369 YNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI 428

Query: 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G    V  YN LI+  G CK  N   A+  F+EM    +KP   +Y  L++     G+
Sbjct: 429 MAGIKITVYPYNSLIN--GHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGK 486

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           L   + +  +MT  G   + + +  LI+A   +  R  D      E++EQ          
Sbjct: 487 LHEAFRLYHEMTGKGIAPNTYTFTTLISA-LFRANRMTDAFRLFDEMLEQ---------- 535

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N   NE+        YN+    +                     C E   V+A E L +
Sbjct: 536 -NMMPNEVT-------YNVMIEGH---------------------CKEGNTVKAFELLNQ 566

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL-YATLVEG---- 336
           M++K    PD Y     I     +G +    K  +D +  E F   E+ Y+ L+ G    
Sbjct: 567 MVQKGL-VPDTYTYRPLISSLCSTGRVCEAKKFIDD-LHREHFKLNEMCYSALLHGYCKE 624

Query: 337 ----------------------AMFGYTPKGMQLAQDT------LVNMNSRNIFLSPRMG 368
                                   +     G    QDT      L NM+ +   L P   
Sbjct: 625 GRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQR--LRPDKV 682

Query: 369 SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               ++    K+G    A  IWD+M     TP++       N L
Sbjct: 683 IYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINEL 726



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
           F LL++++D  +    +P + ++ S+I G  K   ++  F   D M   G  P++  Y  
Sbjct: 666 FGLLKNMHDQRL----RPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTT 721

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           LI+   K    D+A  +++EM      PN  TY C L+  A  G ++    +  DM
Sbjct: 722 LINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM 777



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 45/110 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN +V       R      + D+M+ + + P    + ++I    +   L     F 
Sbjct: 784 NTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFW 843

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           D M   G  PD   YN+LI  C       +A  + ++M +  VKPN  T+
Sbjct: 844 DTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATH 893



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGT 86
           ++  R ++  N   Y+ ++     + R   LRD   V  +M+  GV      +  LI GT
Sbjct: 600 DDLHREHFKLNEMCYSALLHGYCKEGR---LRDALGVCREMVKRGVDMDLVCYAVLIDGT 656

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
           +K       F     M      PD  +Y  +I    K  +  +A  I++ M      PN 
Sbjct: 657 IKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNI 716

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            TY  L+N    AG +D    + ++M  + +  +   Y   +
Sbjct: 717 VTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFL 758


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 45/309 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R     + + YN ++ +            + + M  + +QP+   F  +I G    
Sbjct: 497 EEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVA 556

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++      D M+ +G +P V  YN LI    +     +A+ + ++M    + PN  TY
Sbjct: 557 GDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTY 616

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++   AA+G +   +     +  +G  LD + Y  L+ A                   
Sbjct: 617 TIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK---------------- 660

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF--LSRLLTVYHVAFHAC 267
                      SG                 + +A  V R   F  + R   +Y++     
Sbjct: 661 -----------SGR----------------MQSALAVTREMSFQKIPRNTFIYNILIDGW 693

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
           A   DV   E L++ +K+D   P+++     I     +GD+    KV E+ +     P  
Sbjct: 694 ARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNV 753

Query: 328 ELYATLVEG 336
           + Y TL++G
Sbjct: 754 KTYTTLIKG 762



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 139/350 (39%), Gaps = 19/350 (5%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M  DG+    D++HS++ G              +++K  GF P +  Y  L+++  K  
Sbjct: 393 EMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIG 452

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+ I +EM+   +K N +TY  L+N           +AI  +M  +G   D+  Y 
Sbjct: 453 KVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYN 512

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM---GVSKEELYNLPT 242
            LI A         D A  I+E +++ +   S     N A   ++    V+ +    L T
Sbjct: 513 LLIEAFCKM--GNMDRAICILEKMQKERMQPS-----NRAFRPIIEGYAVAGDMKSALDT 565

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            + + RR G +  ++T Y+   H       VQ   ++L+ +     +P+ +     +R Y
Sbjct: 566 LDLM-RRSGCVPTVMT-YNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 623

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQLAQDTLVNMNSRNI 361
             SGDI    + F     S       +Y TL+      G     + + ++       RN 
Sbjct: 624 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 683

Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           F+        +L+    + G    A  +   M+   + P++    +Y N 
Sbjct: 684 FIYN------ILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINA 727



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 8/211 (3%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A   E + +    N   YN ++     +   +   D+   M  DGV P    + S I   
Sbjct: 669 AVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC 728

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q      ++M   G  P+V  Y  LI    +    D+A++ FEEMK   +KP+ 
Sbjct: 729 CKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDE 788

Query: 147 QTYVCLLNACAAAGQL------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +Y CL+ +  +   +        + ++ R+M+     +D    A   +   +KI R   
Sbjct: 789 ASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVD-LRTAVHWSRWLHKIERTGG 847

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMG 231
             T+ ++ +     W+S+E  G  + +  MG
Sbjct: 848 ALTEALQRI-FPPDWNSLEFLGEPSSSISMG 877



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +     R      V  +M    +     +++ LI G  +   + +      QMK
Sbjct: 651 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 710

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P++  Y   I+ C K  +  +A ++ EEM    +KPN +TY  L+   A     D
Sbjct: 711 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 770

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                  +M  AG   D+  Y  L+T+
Sbjct: 771 RALKCFEEMKLAGLKPDEASYHCLVTS 797



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 58/132 (43%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  +++M   G++P   +F SL+        ++      ++MK+ G    +  Y+ LIS 
Sbjct: 283 RATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISG 342

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  +S  A  +F+E K      NG  Y  +++A   +G ++    +V +M   G    
Sbjct: 343 FAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAP 402

Query: 181 KFCYAGLITAHT 192
              Y  ++  +T
Sbjct: 403 IDVYHSMMHGYT 414


>gi|255684956|gb|ACU27967.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684958|gb|ACU27968.1| At1g03560-like protein [Arabidopsis thaliana]
          Length = 193

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 1   VFENMIRKGSKPNVAIYTVLIYGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 58

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F   +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 59  LCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRD 118

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T    R  D A  + + +E+ +G
Sbjct: 119 SYCYNALIDAFTKH--RKVDEAIALFKRMEEEEG 150



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 42/98 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     DG+      + SLI G  K  R+ +     ++M 
Sbjct: 52  YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS 111

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K +  D+AI +F+ M++ E
Sbjct: 112 EKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEE 149


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 8/206 (3%)

Query: 7   IYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           ++R  K   G L R+FF    GA    R  +      YN ++  L  +    + R ++  
Sbjct: 227 LHRLSKVGRGDLSRKFF-KDMGAAGIKRSVFT-----YNIMIDYLCKEGDLEMARSLFTQ 280

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   G  P    ++SLI G  K   L +     +QMK     PDV  YN LI+   K + 
Sbjct: 281 MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 340

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A     EMK   +KPN  TY   ++A    G L        DM       ++F Y  
Sbjct: 341 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 400

Query: 187 LITAHTNKIPRADDTATKIIELVEQS 212
           LI A+      A+  A K++E + Q+
Sbjct: 401 LIDANCKAGNLAE--ALKLVEEILQA 424



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M      P    +++LI    K  R+   F F  +MKANG  P+V  Y+  I    
Sbjct: 312 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 371

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K     +AI+ F +M++  + PN  TY  L++A   AG L     +V ++  AG  L+  
Sbjct: 372 KEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV 431

Query: 183 CYAGLI 188
            Y  L+
Sbjct: 432 TYTALL 437



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + Y  +V  L     F + + ++D+M+  G+ P +  + +LI G MK   LQ+    R
Sbjct: 604 NVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 663

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G   D+  Y  LI          +A  + +EM    V P+   Y+CL+    A 
Sbjct: 664 DRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYAL 723

Query: 160 GQLDPVYAIVRDMTAAG 176
           G++D    +  +M   G
Sbjct: 724 GKVDEALELQNEMAKRG 740



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++  L+   R  L R  + DM   G++ +   ++ +I    K   L+       QMK 
Sbjct: 224 NALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKE 283

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            GF PD+  YN LI   GK    D+ I IFE+MK  +  P+  TY  L+N      ++  
Sbjct: 284 AGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPK 343

Query: 165 VYAIVRDMTAAGAG---------LDKFCYAGLI 188
            +  + +M A G           +D FC  G++
Sbjct: 344 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 376



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 68  MLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           MLD G+  T   + +LI G  K   +Q+      +M   G  P+VAVY  L+   G CKN
Sbjct: 561 MLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVD--GLCKN 618

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           +  + A ++F+EM    + P+   Y  L++     G L     +   M   G  LD   Y
Sbjct: 619 NCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAY 678

Query: 185 AGLI--TAHTNKIPRADDTATKII 206
             LI   +H+ ++ +A +   ++I
Sbjct: 679 TALIWGLSHSGQVQKARNLLDEMI 702



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 60/145 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++       R     +   +M  +G++P    + + I    K   LQ+   F   M+
Sbjct: 328 YNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMR 387

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P+   Y  LI    K  N  +A+++ EE+ +  +K N  TY  LL+     G++ 
Sbjct: 388 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 447

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               + R M  AG   ++  Y  L+
Sbjct: 448 EAEEVFRAMLNAGVAPNQETYTALV 472



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 13/187 (6%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
            EE  +     N   Y  ++  L  + R     +V+  M+  GV P ++ + +L+ G +K
Sbjct: 418 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 477

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNG 146
              ++       +MK     PD+ +Y  ++   G C  S  ++A  +  E+K+  +  N 
Sbjct: 478 AKEMEYAKDILKEMKEKCIKPDLLLYGTILW--GLCNESRLEEAKLLIGEIKESGINTNA 535

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAG---------AGLDKFCYAGLITAHTNKIPR 197
             Y  L++A   +GQ      ++ +M   G         A +D  C +GL+    +   R
Sbjct: 536 VIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGR 595

Query: 198 ADDTATK 204
             +   +
Sbjct: 596 MSEIGLQ 602



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 54/121 (44%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+QP   ++ +L+ G  K +  +      D+M   G +PD   Y  LI    K  N  +A
Sbjct: 600 GLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEA 659

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + + + M +  ++ +   Y  L+   + +GQ+     ++ +M   G   D+  Y  LI  
Sbjct: 660 LNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKK 719

Query: 191 H 191
           +
Sbjct: 720 Y 720


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 12/161 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDV-----YDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQ 93
           N   YNT+V +      FF   +V        MMLDG ++P    F+S++ G  K  +++
Sbjct: 184 NVVTYNTLVAA------FFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKME 237

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D     D+M   G  PD   YN L+    K   S +A+ +F EM +  + P+  T+  L+
Sbjct: 238 DARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI 297

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +    AG L+    +VR M   G  +++  +  LI     K
Sbjct: 298 HVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKK 338



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N++V  +    +    R V+D+MM +G+ P    +++L+ G  K     +     
Sbjct: 219 NLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVF 278

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G +PDV  +  LI V  K  N + A+ +  +M++  ++ N  T+  L++     
Sbjct: 279 AEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKK 338

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           G LD     VR M          CY  LI  +   + R D+    + E+  ++KG
Sbjct: 339 GFLDDALLAVRGMRQCRIKPSVVCYNALINGYC-MVGRMDEARELLHEM--EAKG 390



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 13/158 (8%)

Query: 37  YANNASEYNTVV-----TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM-KGS 90
           Y  +   YN V+      SLTS RRFF      D M+ DGV P    ++ LI     +G 
Sbjct: 112 YVPSVLAYNAVLLALSDASLTSARRFF------DSMLSDGVAPNVYTYNILIRALCGRGH 165

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +     RD M+  G  P+V  YN L++   +    D A R+   M    +KPN  T+ 
Sbjct: 166 RKEALSILRD-MRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFN 224

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            ++N    AG+++    +  +M   G   D   Y  L+
Sbjct: 225 SMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLV 262



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y++++  L  ++R      ++ +M+  G+QP    + SLI G  K   ++      
Sbjct: 429 DAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLH 488

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G LPDV  Y+ LI+   K   + +A ++  ++   E  P    Y  L++ C  A
Sbjct: 489 DKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKA 548

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            +L  V A+++           FC  GL+
Sbjct: 549 -ELKSVLALLKG----------FCMKGLM 566



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++++           ++   M+  GV P    + SLI    +  RL D       M 
Sbjct: 398 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMI 457

Query: 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             G  PD   Y  LI   G CK  N ++A+ + ++M K  V P+  TY  L+N
Sbjct: 458 KLGLQPDEFTYTSLID--GHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLIN 508



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G++P V  YN ++       +   A R F+ M    V PN  TY  L+ A    G     
Sbjct: 111 GYVPSVLAYNAVLLALSD-ASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITA 190
            +I+RDM  AG G +   Y  L+ A
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAA 194


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 6/177 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S +N  ++ L    R    + V+D M   G  P R  +++L+ G   G R+ D     
Sbjct: 49  DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALY 108

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G+ PDV  YN L+    K    D+A++IF+   K    P+  TY  L+N    A
Sbjct: 109 ERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKA 168

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
            +LD    I++ M +     D   Y  L+     K  R D+    I++     KG+S
Sbjct: 169 DKLDEAQRILQRMVSESLVPDVVTYNSLVNGLC-KNGRVDEARMLIVD-----KGFS 219



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +  +  N   YN +++ L +  R    + +Y+ M+  G  P    +++L+ G  K  +L 
Sbjct: 78  KHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLD 137

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     D     GF+PDV  YN LI+   K    D+A RI + M    + P+  TY  L+
Sbjct: 138 EALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLV 197

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           N     G++D    ++ D    G   +   Y+ LI+    ++ R  ++A +++E
Sbjct: 198 NGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRRL-ESARQLLE 247



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 129/306 (42%), Gaps = 10/306 (3%)

Query: 35  RNYANNASEYNTVVTSLTSQ-RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           + ++ N   Y+T+++ L  + RR    R + + M+L+G +P    +++LI G  +   + 
Sbjct: 216 KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVS 275

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +       +   G+ P+V  YN LI    K    ++A  +F  + K+ ++P+  TY   +
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 335

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           +    AG+++    +++DM   G   D   +  +I     K  R D+    +  +  ++K
Sbjct: 336 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLC-KEKRVDEAEVLLSGM--EAK 392

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD- 272
           G S    S N          K +   + T + + +RG  +   +  Y++      + +  
Sbjct: 393 GCSPNAISFNTLICGQCRAGKWK-KAMTTFKEMLKRG--VKPTVVTYNILVDGLCKARQE 449

Query: 273 --VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             ++   TL + + +  + PDV      I     +G +D+  ++          P    Y
Sbjct: 450 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTY 509

Query: 331 ATLVEG 336
            +L+ G
Sbjct: 510 NSLISG 515



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG---SRLQDTF 96
           NA  +NT++       ++      + +M+  GV+PT   ++ L+ G  K     R+++  
Sbjct: 397 NAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAI 456

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D M   G +PDV  Y+ LI   GK    D A R+   M+     PN  TY  L++  
Sbjct: 457 TLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGL 516

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
               ++D    +   M   G   D   Y  +I+A   +     +   K + L + S    
Sbjct: 517 CGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQ-----EMVDKALALFDGSLEAG 571

Query: 217 SVETSG 222
            V TSG
Sbjct: 572 VVPTSG 577



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGT 86
           +E  +R        YN +V  L   R+   +++   ++D M+  G  P    + +LI G 
Sbjct: 422 KEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL 481

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPN 145
            K  +L D       M+A G +P+V  YN LIS +CG  K  D+A+ +F  M +    P+
Sbjct: 482 GKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDK-VDEALELFVAMVEKGCVPD 540

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
             TY  +++A      +D   A+      AG
Sbjct: 541 TITYGTIISALCKQEMVDKALALFDGSLEAG 571



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 59/143 (41%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+ Y      YN ++  L  + R     +++  ++  G++P    +   I G  K  R++
Sbjct: 286 RQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 345

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D       M   G +PDV  +N +I+   K K  D+A  +   M+     PN  ++  L+
Sbjct: 346 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 405

Query: 154 NACAAAGQLDPVYAIVRDMTAAG 176
                AG+        ++M   G
Sbjct: 406 CGQCRAGKWKKAMTTFKEMLKRG 428



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 8/173 (4%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           G R     A  E   +  Y+ +   YNT++       +      ++D  +  G  P    
Sbjct: 98  GGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVT 157

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEE 136
           +++LI G  K  +L +      +M +   +PDV  YN L++  G CKN   D+A R+   
Sbjct: 158 YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVN--GLCKNGRVDEA-RMLIV 214

Query: 137 MKKYEVKPNGQTYVCLLNA-CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            K +   PN  TY  L++  C    +L+    ++  M   G   D   Y  LI
Sbjct: 215 DKGFS--PNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALI 265



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKK 139
           L+   +K  +++    F +Q+   G L D++ +N  IS  G C+ S    A  +F+ M+K
Sbjct: 22  LLRSLLKSGKIEKAHRFVEQLLVKG-LCDISTFNIYIS--GLCRASRIGDAQTVFDGMRK 78

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
           +   PN  TY  LL+     G++    A+   M  AG   D   Y  L+     K+ + D
Sbjct: 79  HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC-KVGKLD 137

Query: 200 DTATKIIE 207
           + A KI +
Sbjct: 138 E-ALKIFD 144


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/404 (18%), Positives = 156/404 (38%), Gaps = 57/404 (14%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D+++ DG +PT   + +L+    K    +  F    +++ NG  PD  +YN +I+   
Sbjct: 80  IFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFS 139

Query: 123 KCKNSDQAIRIFEEMKKY------------------------------------EVKPNG 146
           +  N  +A++IF++MK                                       VKPN 
Sbjct: 140 ESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPND 199

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATK 204
           +TY  L+ A  +   ++  + ++  M A+G   D   Y  L  A+  K    RA+D   +
Sbjct: 200 RTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILE 259

Query: 205 I-IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF-LSRLLTVYHV 262
           +  E V  ++    +  +G   E  M          +    +V+R     +   L +++ 
Sbjct: 260 MQYEKVAPNERTCGIIVNGYCKEGNM----------IEALRFVYRMKELGVHPNLVIFNS 309

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
                 ++ D   ++  L ++++    PDV      +  +  +G +D   ++F D   + 
Sbjct: 310 LIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAG 369

Query: 323 KFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    ++ L +    GY   G  + A+  L +M    +   P +     +++    +G
Sbjct: 370 IEPDIHAFSILAK----GYVRAGETENAESVLTSMAKSGV--RPNVVICTTIISGWCSAG 423

Query: 382 GYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLV 425
               A  +++ M    I+P+L   E    G  +   P     L+
Sbjct: 424 KMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELL 467



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 63/144 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +  +   +       D+  +M  + V P       ++ G  K   + +   F  +MK
Sbjct: 237 YNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMK 296

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P++ ++N LI       ++D        M++Y VKP+  T+  ++NA ++AG +D
Sbjct: 297 ELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMD 356

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               I  DM  AG   D   ++ L
Sbjct: 357 KCQEIFNDMAKAGIEPDIHAFSIL 380



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 60/133 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++T++ + +S       +++++DM   G++P    F  L  G ++    ++       M 
Sbjct: 342 FSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMA 401

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P+V +   +IS        + A  ++E+M +  + PN +T+  L+   A A Q  
Sbjct: 402 KSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPG 461

Query: 164 PVYAIVRDMTAAG 176
               +++ M   G
Sbjct: 462 KAEELLQLMEEKG 474


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 2/169 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++TVV +L  + +     ++ D M+  GV+P    + +L+ G    S + +     D M 
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 337

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF PDV  Y  LI+   K    D+A+ +FEEM + E  P+ +TY  L+      G+L 
Sbjct: 338 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQ 397

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
              A+  +M A G   D   Y+ L+ +      R  + A  +++ +E S
Sbjct: 398 DAIALFHEMVARGQMPDLVTYSILLDSLCKN--RHLEEAMALLKAIEAS 444



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 113/301 (37%), Gaps = 49/301 (16%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++ S     R      V   ++  G QP    F +LI G     ++ +     
Sbjct: 99  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 158

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   GF P+V  Y  LI+   K  N+  AIR+   M++   +P+   Y  ++++    
Sbjct: 159 DKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 218

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            Q+   + +   M   G   D F Y  L+ A  N              L E    W  V 
Sbjct: 219 RQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCN--------------LCE----WKHVT 260

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMET 278
           T  N   N  +         LP               + ++     A C E K  +A E 
Sbjct: 261 TLLNQMVNSKI---------LPD--------------VVIFSTVVDALCKEGKVTEAHE- 296

Query: 279 LLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL-YATLVE 335
           +++M+ +    PDV  Y  + +  C     ++D   KVF D +  + F P  + Y TL+ 
Sbjct: 297 IVDMMIQRGVEPDVVTYTTLMDGHCL--QSEMDEAVKVF-DMMVRKGFAPDVISYTTLIN 353

Query: 336 G 336
           G
Sbjct: 354 G 354



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 68/144 (47%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
            R+ +A +   Y T++       +      ++++M      P    +++L+ G     RL
Sbjct: 337 VRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRL 396

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           QD      +M A G +PD+  Y+ L+    K ++ ++A+ + + ++   + P+ Q Y  +
Sbjct: 397 QDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNII 456

Query: 153 LNACAAAGQLDPVYAIVRDMTAAG 176
           ++    AG+L+    +  ++++ G
Sbjct: 457 IDGMCRAGELEAARDLFSNLSSKG 480



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+ +  +   YNT++  L    R      ++ +M+  G  P    +  L+    K 
Sbjct: 369 EEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKN 428

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L++       ++A+   PD+ VYN +I    +    + A  +F  +    + P+  TY
Sbjct: 429 RHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTY 488

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA---DDTATKII 206
             +++     G L+    +  +M       D   Y        N I R    ++   + I
Sbjct: 489 NIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTY--------NTIARGFLQNNETLRAI 540

Query: 207 ELVEQ 211
           +L+E+
Sbjct: 541 QLLEE 545



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D M+  G  P    + +LI G  K  ++    +  ++M    ++PD   YN L+    
Sbjct: 332 VFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLC 391

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---- 178
                  AI +F EM      P+  TY  LL++      L+   A+++ + A+       
Sbjct: 392 HVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQ 451

Query: 179 -----LDKFCYAGLITA 190
                +D  C AG + A
Sbjct: 452 VYNIIIDGMCRAGELEA 468



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 4/174 (2%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   Y T++  L           +   M     QP   ++ S+I    K  ++ + F
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 225

Query: 97  FFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               QM   G  PD+  Y  L+ ++C  C+       +  +M   ++ P+   +  +++A
Sbjct: 226 NLFSQMVGQGISPDIFTYTSLVHALCNLCE-WKHVTTLLNQMVNSKILPDVVIFSTVVDA 284

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
               G++   + IV  M   G   D   Y  L+  H   +    D A K+ +++
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHC--LQSEMDEAVKVFDMM 336



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y ++V +L +   +  +  + + M+   + P   +F +++    K  ++ +     D M 
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 302

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PDV  Y  L+   G C  S  D+A+++F+ M +    P+  +Y  L+N      +
Sbjct: 303 QRGVEPDVVTYTTLMD--GHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 360

Query: 162 LDPVYAIVRDM 172
           +D    +  +M
Sbjct: 361 IDKAMYLFEEM 371


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K +R++      ++M
Sbjct: 373 YNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEM 432

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI   GK K  D A  +F+E+K+     + + Y  ++     AG+L
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRL 492

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
           D    +  +M   G   D + Y  L++  A T  +  A  T  ++ E
Sbjct: 493 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 2/167 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQ 93
           R     A  YN+++  L  + ++  + ++Y++M  +G   P    + +LI    K  R  
Sbjct: 188 RKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRD 247

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 ++MK NG  P   +Y  L+++  K  +   A+ +FEEM+    +P+  TY  L+
Sbjct: 248 SAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELI 307

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
                AG++D  Y    +M   G   D      +I     K  R DD
Sbjct: 308 RGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMIN-FLGKAGRLDD 353



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 57  FFLLRDV------YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD 110
           FF L DV      +++M     +P    +  LI G  K  R+ + + F  +M+  G  PD
Sbjct: 275 FFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPD 334

Query: 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIV 169
             V N +I+  GK    D A+++F+EM      P+  TY  ++ A   +  +   V +  
Sbjct: 335 TIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWF 394

Query: 170 RDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
             M  +G     F Y+ LI     TN++ +A
Sbjct: 395 ERMKESGISPSSFTYSILIDGFCKTNRMEKA 425



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 60/141 (42%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + ++M  +G+QPT  ++  L+    K + +       ++M+     PDV  Y  LI   G
Sbjct: 252 LLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLG 311

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    D+A   F EM++   +P+      ++N    AG+LD    + ++M          
Sbjct: 312 KAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVV 371

Query: 183 CYAGLITAHTNKIPRADDTAT 203
            Y  +I A      RA +  +
Sbjct: 372 TYNTIIKALFESKSRASEVPS 392



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 58/126 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +    + Y +++ +L   +R+ L  +++ ++  +    +  ++  +I    K 
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKA 489

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D     D+M   G  PDV  YN L+S   +    D+A+     M+++   P+  +Y
Sbjct: 490 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 549

Query: 150 VCLLNA 155
             +LN 
Sbjct: 550 NIILNG 555


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V SL    R      V  DM   G QPT  ++  L+       R++D       M+
Sbjct: 243 YGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQ 302

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G +PDV VYN L++   K K  D A R+ ++M+ + + PN +T+  +LN   + G+ D
Sbjct: 303 KDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDD 362

Query: 164 PVYAIVRDM 172
             Y + R M
Sbjct: 363 EAYRVFRRM 371



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 47/228 (20%)

Query: 15  GGALGRRFFVTSAGAEEYARRNY-----ANNASEYNTVVTSLTSQRRFFLLRDVYDDMML 69
            G L  RFF       E+AR+       A+    ++TVV SL   R++ L+ DV   M  
Sbjct: 78  AGMLAYRFF-------EWARKQRRGGGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRR 130

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
            GV    + F  ++    +  ++ +  +  + M+  G +P++A +N L+    K KN  +
Sbjct: 131 QGVVNV-ETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLCALCKSKNVRK 189

Query: 130 AIRIFEEM--------KKYEV--------------------------KPNGQTYVCLLNA 155
           A  IFE+M        K Y +                          +P+  TY  ++++
Sbjct: 190 AQEIFEQMNGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDS 249

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
               G+++    +V+DMT+ G     F Y+ L+  +  ++   D  AT
Sbjct: 250 LCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVAT 297



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           DM  DG+ P   ++++L+    K  +  + F   D M+ +G  P+   +N +++      
Sbjct: 300 DMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLG 359

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             D+A R+F  M K   +P+  TY  ++ 
Sbjct: 360 KDDEAYRVFRRMIK-RCQPDSDTYTMMIK 387



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YN +VT+    ++F     V DDM   G+ P    ++ ++   +   +  + +  FR  +
Sbjct: 313 YNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMI 372

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K     PD   Y  +I +  +    + A+++++ M+  +  P+  T+  L+N     G++
Sbjct: 373 KRCQ--PDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEV 430

Query: 163 DPVYAIVRDMTAAG 176
                ++ DM   G
Sbjct: 431 SQACVLLEDMIEKG 444


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 147/379 (38%), Gaps = 47/379 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L    +     ++   M+  G +P    F  LI G  +   +       
Sbjct: 79  NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 138

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M+    +P    Y  +I+    CK+   A ++ E+M    +KPN   Y  L+   A+ 
Sbjct: 139 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASE 198

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+++    ++  M+ +G   D FCY  +I+   +K  + ++ +T ++E+  Q +G     
Sbjct: 199 GRIEEARRLLDGMSCSGVAPDIFCYNAIISC-LSKAGKMEEASTYLLEI--QGRGLKPDA 255

Query: 220 TS------GNNAENEMMGVSK--EELY------NLPTAEYV---HRRGGFLSRLLTVYHV 262
            +      G +   +M   +K  +E+       N P    +   H + G L   L+++  
Sbjct: 256 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR- 314

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             HA   L DVQ     +  L                   L +G +    KVF +     
Sbjct: 315 HLHALGVLPDVQTCSAFIHGL-------------------LKNGRVQEALKVFSELKEKG 355

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y++L+ G    G   K  +L  +  +   + NIF+   +   L       KSG
Sbjct: 356 LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC------KSG 409

Query: 382 GYTTANYIWDLMQARKITP 400
               A  ++D M  + + P
Sbjct: 410 DIQRARKLFDGMPEKGLEP 428



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 65/146 (44%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +    +   Y+++++    Q       +++D+M L G+ P   ++++L+ G  K  
Sbjct: 350 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 409

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +Q      D M   G  PD   Y+ +I    K +N  +A  +F EM    V+P+   Y 
Sbjct: 410 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 469

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            L++ C   G ++    + R+M   G
Sbjct: 470 ALVHGCCKEGDMEKAMNLFREMLQKG 495



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +RN   +A  Y  ++  L   +   L   + + M   G++P   ++ +LI+G    
Sbjct: 139 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASE 198

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     D M  +G  PD+  YN +IS   K    ++A     E++   +KP+  T+
Sbjct: 199 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 258

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              +   +  G++        +M   G   +   Y  LI  H
Sbjct: 259 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGH 300



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ ++   G+ P    + SLI G  K   ++  F   D+M   G  P++ +YN L+   G
Sbjct: 347 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVD--G 404

Query: 123 KCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK+ D  +A ++F+ M +  ++P+  TY  +++    +  +   +++  +M + G    
Sbjct: 405 LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 464

Query: 181 KFCYAGLI 188
            F Y  L+
Sbjct: 465 SFVYNALV 472



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 51/216 (23%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +  A N   YN +V  L         R ++D M   G++P    + ++I G  K 
Sbjct: 384 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 443

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVC---------------------------- 121
             + + F    +M + G  P   VYN L+  C                            
Sbjct: 444 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 503

Query: 122 ----GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL------------- 162
               G CK+    +A ++F+EM   ++ P+  TY  +++    AG++             
Sbjct: 504 TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 563

Query: 163 ----DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               D V+A+   M A G   D+  Y  +I AH  +
Sbjct: 564 NLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 599



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 113/323 (34%), Gaps = 51/323 (15%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           GV P      + I G +K  R+Q+      ++K  G +PDV  Y+ LIS  G CK    +
Sbjct: 320 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS--GFCKQGEVE 377

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A  + +EM    + PN   Y  L++    +G +     +   M   G   D   Y+ +I
Sbjct: 378 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 437

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
             +                     K  +  E      E    GV                
Sbjct: 438 DGY--------------------CKSENVAEAFSLFHEMPSKGVQPHSF----------- 466

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQ-AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
                     VY+   H C +  D++ AM    EML+K   +   +  +  I  Y  S  
Sbjct: 467 ----------VYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTL--IDGYCKSCK 514

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRM 367
           I    ++F++ I  +  P    Y T+++   +      M+ A      M  RN+ +    
Sbjct: 515 IQEASQLFQEMIAKQIMPDHVTYTTVID---WHCKAGKMEEANLLFKEMQERNLIVDTVF 571

Query: 368 GSDLLLVAAGEKSGGYTTANYIW 390
                +VA G K    T    I+
Sbjct: 572 ALFEKMVAKGVKPDEVTYGLVIY 594



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 111/314 (35%), Gaps = 19/314 (6%)

Query: 102 MKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           M   G +P+   Y Y I   G C  K  ++A   FEEM+K  +KP+      L++     
Sbjct: 1   MGEKGLVPNT--YTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 58

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWSS 217
           G +D V  I   M + G  ++   Y  LI       K+ +A +    +I L  +    + 
Sbjct: 59  GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 118

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
                       MG + E L  +     V             Y    +     KD+    
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEKRNLVPSA--------VSYGAMINGLCHCKDLSLAN 170

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
            LLE +      P+V +    I  Y   G I+   ++ +   CS   P    Y  ++  +
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII--S 228

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK 397
                 K M+ A   L+ +  R   L P   +    +    K+G  T A   +D M    
Sbjct: 229 CLSKAGK-MEEASTYLLEIQGRG--LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 285

Query: 398 ITPSLPAVEAYYNG 411
           + P+ P      NG
Sbjct: 286 LMPNNPLYTVLING 299



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
             +    N   Y  +   L   +R    +  +++M   G++P  +   +LI G M+   +
Sbjct: 2   GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 61

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            +    +D M + G   ++  YN LI    K    ++A  I + M     KPN +T+ CL
Sbjct: 62  DEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF-CL 120

Query: 153 L 153
           L
Sbjct: 121 L 121



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 61/137 (44%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M+  GV+P    +  +I    K   L + F  RD++   G L    +++ LI+   
Sbjct: 573 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALC 632

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K ++  +A ++ +EM +  +KP+      L+ +   AG++D    +   + + G   D  
Sbjct: 633 KREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTT 692

Query: 183 CYAGLITAHTNKIPRAD 199
               L+  + N     D
Sbjct: 693 TLIDLVNGNLNDTDSED 709


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 39/355 (10%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVC 121
           V+++M L G +     +  LI G     R+ +      +MK +   P V  Y  LI S+C
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLC 334

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G  + S +A+ + +EM++  +KPN  TY  L+++  +  + +    ++  M   G   + 
Sbjct: 335 GSERKS-EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-----SGNNAEN--EMMGVSK 234
             Y  LI  +  +    D  A  ++EL+E  K   +  T      G    N  + MGV  
Sbjct: 394 ITYNALINGYCKRGMIED--AVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLN 451

Query: 235 EELYNLPTAEYVH---------RRGGFLS--RLLTV------------YHVAFHACAELK 271
           + L      + V          R G F S  RLL++            Y     +  + K
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSK 511

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
            V+    L + L++   +P+V +    I  Y  +G +D  H + E  +     P +  + 
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFN 571

Query: 332 TLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
            L+ G       K   L ++ +V      I L P + +D +L+    K G +  A
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMV-----KIGLQPTVSTDTILIHRLLKDGDFDHA 621



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 164/407 (40%), Gaps = 54/407 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ SL    R     ++  +M   G++P    +  LI       + +       QM 
Sbjct: 326 YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQML 385

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTY------VCLLNA 155
             G +P+V  YN LI+  G CK    + A+ + E M+  ++ PN +TY       C  N 
Sbjct: 386 EKGLMPNVITYNALIN--GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV 443

Query: 156 CAAAGQLDPVY--AIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD--------TATKI 205
             A G L+ +    ++ D+    + +D  C +G   +    +   +D        T T +
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503

Query: 206 IELVEQSKG-------WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
           I+ + +SK        + S+E  G N  N +M  +  + Y    A  V      L ++L+
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNP-NVVMYTALIDGY--CKAGKVDEAHLMLEKMLS 560

Query: 259 --------VYHVAFHA-CAELKDVQAMETLL-EMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
                    ++   H  CA+ K  +A  TLL E + K    P V      I   L  GD 
Sbjct: 561 KNCLPNSLTFNALIHGLCADGKLKEA--TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618

Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQL-AQDTLVNMNSRNIFLSPRM 367
           D+ +  F+  + S   P A  Y T ++     Y  +G  L A+D +  M    +  SP  
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQ----TYCREGRLLDAEDMMAKMRENGV--SP-- 670

Query: 368 GSDLLLVAAGEKS-GGYTTANYIWDLMQARKITPSLPAVEAYYNGLK 413
             DL   ++  K  G     N+ +D+++  + T   P+   + + +K
Sbjct: 671 --DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 151/403 (37%), Gaps = 55/403 (13%)

Query: 1   MRLLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFL- 59
           +RLL  + +   SVG AL           +E     Y      YNT++ SL    RF L 
Sbjct: 145 IRLL--MIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLA---RFGLV 199

Query: 60  --LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
             ++ VY +M+ D V P    ++ ++ G  K   +++   +  ++   G  PD   Y  L
Sbjct: 200 DEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSL 259

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           I    + K+ D A ++F EM     + N   Y  L++    A ++D    +   M     
Sbjct: 260 IMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK---- 315

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
             D  C+  +             T T +I+              G+  ++E + + KE  
Sbjct: 316 --DDECFPTV------------RTYTVLIK-----------SLCGSERKSEALNLVKE-- 348

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
                        G    + T   +    C++ K  +A E L +ML+K    P+V     
Sbjct: 349 ---------MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLM-PNVITYNA 398

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357
            I  Y   G I++   V E     +  P    Y  L++    GY    +  A   L  M 
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK----GYCKSNVHKAMGVLNKML 454

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            R +   P + +   L+    +SG + +A  +  LM  R + P
Sbjct: 455 ERKVL--PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 21/259 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   +N   N+  +N ++  L +  +      + + M+  G+QPT      LI   +K 
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
                 +    QM ++G  PD   Y   I    +      A  +  +M++  V P+  TY
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK----- 204
             L+      GQ +  + +++ M   G    +  +  LI  H  ++       ++     
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI-KHLLEMKYGKQKGSEPELCA 734

Query: 205 ---------IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH---RRGGF 252
                    ++EL+E+     SV  +  + E  ++G+   E+ NL  AE V    +R   
Sbjct: 735 MSNMMEFDTVVELLEKMVE-HSVTPNAKSYEKLILGIC--EVGNLRVAEKVFDHMQRNEG 791

Query: 253 LSRLLTVYHVAFHACAELK 271
           +S    V++     C +LK
Sbjct: 792 ISPSELVFNALLSCCCKLK 810



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 64/142 (45%), Gaps = 1/142 (0%)

Query: 48  VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-G 106
           + ++++   F  + ++ + M+   V P    +  LI+G  +   L+      D M+ N G
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             P   V+N L+S C K K  ++A ++ ++M      P  ++   L+      G+ +   
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGT 851

Query: 167 AIVRDMTAAGAGLDKFCYAGLI 188
           ++ +++   G   D+  +  +I
Sbjct: 852 SVFQNLLQCGYYEDELAWKIII 873


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R +A +   YN ++        + +   +Y+DM   G  P R  +  ++    + 
Sbjct: 196 EEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQI 255

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             LQ+     ++M+  G++PD  +Y  ++ + GK +N+++A+  +++M    + PN Q  
Sbjct: 256 GHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQIS 315

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             LL +     Q D  + ++  M A G
Sbjct: 316 NSLLGSYLRMQQFDLAFGVIETMKAWG 342



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 6/187 (3%)

Query: 5   QSIYRH----HKSVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFF 58
           Q  Y+H    + ++ G +GR   F   S   +E  R         YN ++ +        
Sbjct: 60  QEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLG 119

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
               ++  M  +G  P R  + +L+    K     +      +M+  GF PD   Y+ +I
Sbjct: 120 EAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVII 179

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
              GK     +A+++FEEM +    P+  TY  +++  A +G       +  DM  AG  
Sbjct: 180 HCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFH 239

Query: 179 LDKFCYA 185
            D+  Y+
Sbjct: 240 PDRVTYS 246



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 53/127 (41%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D+Y  M   G QP    +  +I    K  ++ +     ++M   GF P +  YN +I + 
Sbjct: 158 DMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQ 217

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K  N   A++++ +M+     P+  TY  ++      G L     +  +M  AG   D 
Sbjct: 218 AKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDA 277

Query: 182 FCYAGLI 188
             Y  ++
Sbjct: 278 PIYGVMV 284



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  P V  YN LI   G+     +A+RIF +M++    P+  TY  L++  + A
Sbjct: 91  QEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKA 150

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           G  D    + + M  AG   D F Y+ +I     K  +  +      E+VE+
Sbjct: 151 GFHDNAMDMYQKMQQAGFQPDTFTYSVIIHC-LGKAGKVSEALKLFEEMVER 201


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 64/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L  +    L   VY  MM     P    F  LI G  K   ++D     D+M 
Sbjct: 164 YNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMT 223

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD   Y  +IS   + K  D A R+F++MK   V P+  T   LLN      ++D
Sbjct: 224 QRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVD 283

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
             ++++R     G  LD   Y+ LI
Sbjct: 284 EAFSLLRLFEKDGYVLDVRGYSCLI 308



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +A  Y  V++ L   +R      ++D M   GV P     ++L+ G    
Sbjct: 220 DEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCML 279

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + F      + +G++ DV  Y+ LI    + K  +    ++ +M +  VKP+   Y
Sbjct: 280 DRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLY 339

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             ++   A AG++     ++ +MT +G   D  CY  LI    +
Sbjct: 340 TIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCD 383



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 79/400 (19%), Positives = 156/400 (39%), Gaps = 27/400 (6%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTR 76
           LG RFF+ ++  + +        A E   ++T L  +Q    L     + +   G++   
Sbjct: 74  LGFRFFIWASNFKRF-------RAWESCDLITDLLINQNGLELYCQTLEALKNGGIKVHN 126

Query: 77  DLFHSLIVGTMK---GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           D F  LI   +K     +  +TF     M+     PDV  YN ++ V  +      A+ +
Sbjct: 127 DAFFVLIKVYLKMGLTDKAMETF---GSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTV 183

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           +  M K    PN  T+  L++    +G +     +  +MT  G   D F Y  +I+    
Sbjct: 184 YTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLC- 242

Query: 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFL 253
           +  R DD A ++ + ++ S       T         M    +E ++L       + G  L
Sbjct: 243 RSKRVDD-AYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSL--LRLFEKDGYVL 299

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
              +  Y          K  + ++ L   + +D   PDVY+    ++    +G + +  +
Sbjct: 300 D--VRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALE 357

Query: 314 VFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLL 372
           +  +   S   P    Y  L++    G+   G +  A+   + ++  + F  P + +  +
Sbjct: 358 LLNEMTESGVVPDTVCYNVLIK----GFCDMGLLSEARSLQLEISRHDCF--PNVKTYSI 411

Query: 373 LVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           L++   ++G    A  I++ M+     PS     +  +GL
Sbjct: 412 LISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGL 451



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 39/178 (21%)

Query: 32  YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           + +  Y  +   Y+ ++  L   +R+  ++ +Y  M+ D V+P   L+  ++ G  +  +
Sbjct: 292 FEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGK 351

Query: 92  LQDTFFFRDQMKANGFLPD-----------------------------------VAVYNY 116
           ++D     ++M  +G +PD                                   V  Y+ 
Sbjct: 352 VRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSI 411

Query: 117 LISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           LIS  G C+N  +  A  IF EM+K    P+  T+  L++     GQL+  + +   M
Sbjct: 412 LIS--GMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM 467



 Score = 41.2 bits (95), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V        F     ++ +M   G+ P    + +LI G ++  R +D +   DQM+
Sbjct: 527 YNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQME 586

Query: 104 ANGFLPDVAVYNYLIS 119
            NG  PD AVY  +++
Sbjct: 587 KNGCTPDAAVYRTMMT 602



 Score = 38.5 bits (88), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           Q+  +G  P +  YN L++   K  N + A ++F EM+   + P+  TY  L+N      
Sbjct: 514 QLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQ 573

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRA 198
           + +  Y +   M   G   D   Y  ++T    +  +PRA
Sbjct: 574 REEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRA 613


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE + R    +   Y +++  L    R    R  +D M+  G++P    +  LI G    
Sbjct: 293 EEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATK 352

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L +   F D M  NG  PD  ++N   S   KC   D+A+ IF +M+++ + PN   Y
Sbjct: 353 GALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNY 412

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
             L++A    G++D        M   G   +   +  L+      +K  RA++   ++++
Sbjct: 413 GALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLD 472



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 121/335 (36%), Gaps = 29/335 (8%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   Y TV+  L   + F     V+  M+ +G +P    ++ LI G +   
Sbjct: 224 EMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIG 283

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++     ++M A G  PD   Y  L++   K     +A   F+ M +  +KP   TY 
Sbjct: 284 KWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYG 343

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATK---- 204
            L++  A  G L  +++ +  M   G   D   +    +A+     I +A D   K    
Sbjct: 344 ILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH 403

Query: 205 -----------IIELVEQSKGWSSVETSGNNAENEMMG----VSKEELYNLPTAEYVHRR 249
                      +I+ + +       E   N   NE +     V    +Y L T +   R 
Sbjct: 404 GLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERA 463

Query: 250 GGFLSRLL--------TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
              +  +L          ++        +  V     L+++++     PD +     I  
Sbjct: 464 EELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISG 523

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           Y  +G  D   KVF+  +     P    Y TL+ G
Sbjct: 524 YCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHG 558



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N++V  L +  ++    ++  +M+  G+ P    F++LI       R+ +     
Sbjct: 443 NIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLI 502

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M+  G  PD   Y  LIS       +D+A ++F+ M    + P   TY  LL+   +A
Sbjct: 503 DLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSA 562

Query: 160 GQLDPVYAIVRDMTAAGA 177
            ++D  Y + R+M   G 
Sbjct: 563 SRIDDAYCLFREMLRKGV 580



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D M+  G+ PT   +++L+ G    SR+ D +    +M   G  P V  YN ++    
Sbjct: 536 VFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLF 595

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           + K   +A  ++  M     K +  TY  +LN    +  +D  + + + + + G  L+  
Sbjct: 596 QTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNII 655

Query: 183 CYAGLITA 190
            +  +I A
Sbjct: 656 TFTIMIGA 663



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 16/274 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  +NT++ +L +  R    R + D M   GV+P    +  LI G     R  +     
Sbjct: 478 NAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVF 537

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D M + G  P    YN L+   G C  S  D A  +F EM +  V P   TY  +L+   
Sbjct: 538 DGMVSIGLSPTEVTYNTLLH--GYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLF 595

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKIIELVEQSKGW 215
              +      +  +M  +G   D + Y  ++    N + +++  D A K+ + +  SKG 
Sbjct: 596 QTKRFSEAKELYLNMINSGTKCDIYTYNIIL----NGLCKSNCVDEAFKMFQSL-CSKGL 650

Query: 216 S-SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             ++ T        + G  KE+  +L  A   +   G +  ++T Y +      E   ++
Sbjct: 651 QLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN---GLVPNVVT-YRLVAENLIEEGSLE 706

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
             ++L   ++K+  +P+  ++   +R  LH GDI
Sbjct: 707 EFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 740



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 11/280 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D+++ M   G+ P    + +LI    K  R+ D     +QM   G  P++ V+N L+   
Sbjct: 395 DIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGL 454

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 ++A  +  EM    + PN   +  L+      G++     ++  M   G   D 
Sbjct: 455 CTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDA 514

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNL 240
           F Y  LI+ +   +    D A K+ + +  S G S  E + N   +     S+ ++ Y L
Sbjct: 515 FSYTPLISGYC--LTGRTDEAEKVFDGM-VSIGLSPTEVTYNTLLHGYCSASRIDDAYCL 571

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLLEMLKKDRKSPDVYIVMQNI 299
                + R+G  ++  +  Y+   H   + K   +A E  L M+    K  D+Y     +
Sbjct: 572 --FREMLRKG--VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKC-DIYTYNIIL 626

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
                S  +D   K+F+  +CS+      +  T++ GA+ 
Sbjct: 627 NGLCKSNCVDEAFKMFQS-LCSKGLQLNIITFTIMIGALL 665



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 1/166 (0%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+++ RR   N  S Y+ V+    ++ +     +++ +M+  G+ P    + ++I G  K
Sbjct: 188 ADDHGRRCPPNVVS-YSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCK 246

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
                       QM  NGF P+   YN LI          + +++ EEM    +KP+  T
Sbjct: 247 AQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYT 306

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Y  LLN     G+          M   G       Y  LI  +  K
Sbjct: 307 YGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATK 352



 Score = 38.1 bits (87), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 70/179 (39%), Gaps = 2/179 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+        YNT++  L   +RF   +++Y +M+  G +     ++ ++ G  K +
Sbjct: 574 EMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSN 633

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            + + F     + + G   ++  +  +I    K    + A+ +F  +    + PN  TY 
Sbjct: 634 CVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYR 693

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
            +       G L+   ++   M   G   +      L+    H   I RA    +K+ E
Sbjct: 694 LVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDE 752


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 124/284 (43%), Gaps = 26/284 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +    L + V+D++   G++P+   F++L+ G ++   L + F  +  M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  + A  +F EM    + PNG T+  L++     G 
Sbjct: 199 ASGVQPDVYTYSVLIN--GLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGS 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI-IELVEQSKGWSSV 218
           +D      ++M   G   D   Y  LI     K  + +A D   ++ ++ ++  K   + 
Sbjct: 257 IDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDV 273
              G+  E            +L TA Y  +R   +   + +  VA+ A     C E + V
Sbjct: 317 LIDGSCKEG-----------DLETALYYRKR--MIKENIRLDDVAYTALISGLCREGQSV 363

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            A + L EML    K PD       I  +   GD+  G K+ ++
Sbjct: 364 DAEKMLREMLSVGLK-PDNGTYTMIINEFCKKGDVKTGSKLLKE 406



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 6/150 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+ ++ +   YNT++  L  +      +D+ D+M + G++P +  + +LI G+ K 
Sbjct: 265 KEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 90  SRLQDTFFFRDQM-KANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNG 146
             L+   ++R +M K N  L DVA Y  LIS  G C+   S  A ++  EM    +KP+ 
Sbjct: 325 GDLETALYYRKRMIKENIRLDDVA-YTALIS--GLCREGQSVDAEKMLREMLSVGLKPDN 381

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            TY  ++N     G +     ++++M   G
Sbjct: 382 GTYTMIINEFCKKGDVKTGSKLLKEMQRDG 411



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   + T++          L  + Y +M+  G  P    +++LI G  K   L+      
Sbjct: 240 NGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF--EEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  PD   Y  LI   G CK  D    ++  + M K  ++ +   Y  L++   
Sbjct: 300 DEMSMKGLKPDKITYTTLID--GSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLC 357

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             GQ      ++R+M + G   D   Y  +I     K
Sbjct: 358 REGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKK 394


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 22/282 (7%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D +   G++P+   F++L+ G ++   L + F  +  M A+G  PDV  Y+ LI+  G
Sbjct: 162 VFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN--G 219

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK S  D A  +F+EM    + PNG T+  L++     G++D    + + M +     D
Sbjct: 220 LCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPD 279

Query: 181 KFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
              Y  LI     K  + +A D   ++     + KG    + S     +   G  KE   
Sbjct: 280 LITYNTLIYGLCKKGDLKQAQDLIDEM-----RMKGLKPDKISYTTLID---GCCKEG-- 329

Query: 239 NLPTAEYVHRRGGFLS--RLLTVYHVAFHA--CAELKDVQAMETLLEMLKKDRKSPDVYI 294
           +L TA + HR+       RL  V + A  +  C E + + A + L EML    + PD   
Sbjct: 330 DLETA-FEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLR-PDTGT 387

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               I  +   GD+  G K+ ++       P    Y  L+ G
Sbjct: 388 YTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M+  G+ P    F +LI G  K  R+        QM 
Sbjct: 213 YSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQML 272

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM+   +KP+  +Y  L++ C   G 
Sbjct: 273 SQSLSPDLITYNTLIY--GLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGD 330

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L+  +   + M      LD   Y  LI+ 
Sbjct: 331 LETAFEHRKRMIQENIRLDDVAYTALISG 359



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +      +D+ D+M + G++P +  + +LI G  K   L+  F  R +M 
Sbjct: 283 YNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMI 342

Query: 104 ANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                 D   Y  LIS  G C+   S  A ++  EM    ++P+  TY  ++N     G 
Sbjct: 343 QENIRLDDVAYTALIS--GLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGD 400

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++++M   G
Sbjct: 401 VWTGSKLLKEMQRDG 415



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 65/165 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  +VY  M+   + P    +++LI G  K 
Sbjct: 234 DEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKK 293

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+      D+M+  G  PD   Y  LI  C K  + + A    + M +  ++ +   Y
Sbjct: 294 GDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAY 353

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M + G   D   Y  +I     K
Sbjct: 354 TALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKK 398



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 64/326 (19%), Positives = 124/326 (38%), Gaps = 13/326 (3%)

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
           MK    +  + F  ++   G+   +  +N L+    K  +   A+ +F+ + K+ ++P+ 
Sbjct: 116 MKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSV 175

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            ++  L+N     G LD  + +   M A+G   D + Y+ LI     K  + DD      
Sbjct: 176 VSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLING-LCKESKMDDANELFD 234

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
           E++++      +  +G      + G  K    +L    Y       LS  L  Y+   + 
Sbjct: 235 EMLDK-----GLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYG 289

Query: 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
             +  D++  + L++ ++     PD       I      GD++   +  +  I       
Sbjct: 290 LCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 349

Query: 327 AELYATLVEGAMFGYTPKGMQL-AQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTT 385
              Y  L+ G       +G  + A+  L  M S  + L P  G+  +++    K G   T
Sbjct: 350 DVAYTALISGL----CQEGRSIDAEKMLREMLS--VGLRPDTGTYTMIINEFCKKGDVWT 403

Query: 386 ANYIWDLMQARKITPSLPAVEAYYNG 411
            + +   MQ     PS+       NG
Sbjct: 404 GSKLLKEMQRDGHVPSVVTYNVLMNG 429


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 10/299 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y++++  L    R    R ++D M   G++P    + +L+ G      L +     
Sbjct: 305 NVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 364

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M  NG  PD  V+N LI    K +  DQA+ +F +M+++ + PN   Y  +++    +
Sbjct: 365 DLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKS 424

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV- 218
           G +D        M   G   +   Y  LI        + D     I+E++++    +++ 
Sbjct: 425 GSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCT-CDKWDKAEELILEMLDRGICLNTIF 483

Query: 219 -ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
             +  ++   E   +  E+L++L        R G    ++T   +    C   K  +A +
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMV------RIGVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            L  M+    K PD+      I  Y     +D+   +F++ + S   P    Y  +++G
Sbjct: 538 LLASMVSVGVK-PDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQG 595



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 72/165 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +   +R    + + Y T++    ++     +  + D M+ +G+QP   +F+ LI    K 
Sbjct: 330 DSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQ 389

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++        +M+ +G  P+V  Y  +I V  K  + D A+  FE+M    + PN   Y
Sbjct: 390 EKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVY 449

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++      + D    ++ +M   G  L+   +  +I +H  +
Sbjct: 450 TSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKE 494



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   Y++++ +L   +      +V + M+ +GV P    ++S++ G     
Sbjct: 226 EMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 285

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++      +M+++G  P+V  Y+ L++   K   S +A +IF+ M K  ++P+  TY 
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            LL   A  G L  ++A++  M   G   D   +  LI A+  +
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQ 389



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 152/375 (40%), Gaps = 20/375 (5%)

Query: 44  YNTVVTSLT----SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YN ++  L     SQ    LL  + DD    G  P    +++++ G  K       +   
Sbjct: 166 YNNLLKGLCDENRSQEALELLHMMADDRG-GGSPPDVVSYNTVLNGFFKEGDSDKAYSTY 224

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G LPDV  Y+ +I+   K +  D+A+ +   M K  V P+  TY  +L+   ++
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           GQ       ++ M + G   +   Y+ L+  +  K  R+ + A KI + + +      + 
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMN-YLCKNGRSTE-ARKIFDSMTKRGLEPDIA 342

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T     +      +  E++ L   + + R G  +     V+++   A A+ + V     +
Sbjct: 343 TYRTLLQGYATKGALVEMHAL--LDLMVRNG--IQPDHHVFNILICAYAKQEKVDQAMLV 398

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
              +++   +P+V      I     SG +D+    FE  I     P   +Y +L+ G   
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC- 457

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
             T      A++ ++ M  R I L+    +   ++ +  K G    +  ++DLM    + 
Sbjct: 458 --TCDKWDKAEELILEMLDRGICLNTIFFNS--IIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 400 PSLPAVEAYYNGLKD 414
           P +      YN L D
Sbjct: 514 PDIIT----YNTLID 524



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   +N+++ S   + R      ++D M+  GV+P    +++LI G     
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +       M + G  PD+  Y  LI+  G C+ S  D A+ +F+EM    V PN  T
Sbjct: 531 KMDEATKLLASMVSVGVKPDIVTYGTLIN--GYCRVSRMDDALALFKEMVSSGVSPNIIT 588

Query: 149 YVCLLNA 155
           Y  +L  
Sbjct: 589 YNIILQG 595


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y ++++ +  + R      ++D M+  G+ P    +++LI G      L+  F +RD+M 
Sbjct: 246 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMV 305

Query: 104 ANGFLPDVAVYNYLISVC---GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G +P V+ YN L+      G+   +D  I+   EM+K  + P+  TY  L+N  +  G
Sbjct: 306 KKGIMPSVSTYNLLVHALFMEGRMGEADDMIK---EMRKKGIIPDAITYNILINGYSRCG 362

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
                + +  +M + G       Y  LI   +  N++  ADD   KI++
Sbjct: 363 NAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD 411



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  N   YNT++   +S+      R + D M + G++P    + SLI G  K  RL++  
Sbjct: 204 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEAS 263

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLN 154
              D+M   G +P+   YN LI   G C   D  +A    +EM K  + P+  TY  L++
Sbjct: 264 GLFDKMVEIGLVPNAVTYNTLID--GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 321

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           A    G++     ++++M   G   D   Y  LI  ++
Sbjct: 322 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 359



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R++   +   +NT++     + +    R + D+M   G++P    +++LI G  + 
Sbjct: 442 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRR 501

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++D F  RD+M + GF P +  YN LI    K +  D A  + +EM    + P+  TY
Sbjct: 502 GDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 561

Query: 150 VCLL 153
           + L+
Sbjct: 562 LSLI 565



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           +R F LL++    M    V P    F++L+ G  +  ++++     D+MK  G  PD   
Sbjct: 435 ERAFMLLKE----MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHIS 490

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           YN LIS  G+  +   A  + +EM      P   TY  L+       + D    ++++M 
Sbjct: 491 YNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMV 550

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
             G   D   Y  LI    N     +D A+
Sbjct: 551 NKGISPDDSTYLSLIEGMGNVDTLVEDNAS 580



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 61  RDVYDDMML--DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           R+++D++ L  D +     +   L+ G +K +R      F   M+  GF P+V  YN +I
Sbjct: 161 RELFDELTLSRDRLSVKSSIVFDLLEGKLKKARE-----FIGFMEGLGFKPNVVSYNTII 215

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
                  N + A RI + M+   ++P+  TY  L++     G+L+    +   M   G  
Sbjct: 216 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 275

Query: 179 LDKFCYAGLITAHTNK 194
            +   Y  LI  + NK
Sbjct: 276 PNAVTYNTLIDGYCNK 291



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 39/199 (19%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF-----------------------FLLR----- 61
           +E  ++    + S YN +V +L  + R                         L+      
Sbjct: 302 DEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC 361

Query: 62  -------DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
                  D++++M+  G++PT   + SLI    + +R+++     +++   G  PDV ++
Sbjct: 362 GNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMF 421

Query: 115 NYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           N +I   G C N   ++A  + +EM +  V P+  T+  L+      G+++    ++ +M
Sbjct: 422 NAMID--GHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 479

Query: 173 TAAGAGLDKFCYAGLITAH 191
              G   D   Y  LI+ +
Sbjct: 480 KXRGIKPDHISYNTLISGY 498



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 115/275 (41%), Gaps = 24/275 (8%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           G +P    ++++I G      ++      D M+  G  PD   Y  LIS  G CK    +
Sbjct: 203 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS--GMCKEGRLE 260

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A  +F++M +  + PN  TY  L++     G L+  ++   +M   G       Y  L+
Sbjct: 261 EASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 320

Query: 189 TA--HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
            A     ++  ADD   ++     + KG      + N   N   G S+    N   A  +
Sbjct: 321 HALFMEGRMGEADDMIKEM-----RKKGIIPDAITYNILIN---GYSR--CGNAKRAFDL 370

Query: 247 HRRGGFLSRLLTVYHVAF----HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
           H     LS+ +   HV +    +  +    ++  + L E +     SPDV +    I  +
Sbjct: 371 HNE--MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGH 428

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAEL-YATLVEG 336
             +G+++    + ++ +  +  PP E+ + TL++G
Sbjct: 429 CANGNVERAFMLLKE-MDRKSVPPDEVTFNTLMQG 462


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 118/310 (38%), Gaps = 11/310 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            E  R+    +   YN ++ +L   R       V   M  DG QP    +  +I G    
Sbjct: 289 HEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATL 348

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYN-YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            RL++      +MK  G +P++   N +L S+C K   S +A   F+ M     KP+  +
Sbjct: 349 GRLKEAAKMFREMKKRGLIPNIVTCNSFLASLC-KHGRSKEAAEFFDSMTAKGHKPDIFS 407

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  LL+  A+ G    +  +   M + G   +   +  LI A+  +    DD      E+
Sbjct: 408 YCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKR-GMVDDAMLIFTEM 466

Query: 209 VEQSKGWSSVETSGNNAENEMMG--VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
            +Q      V  S   +    MG      E +N   A  +       S ++  +      
Sbjct: 467 QQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGF------ 520

Query: 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
           C     V+A E + EM+ K    PD+      I      G + + H +F+      + P 
Sbjct: 521 CMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPG 580

Query: 327 AELYATLVEG 336
              + +L++G
Sbjct: 581 VITFNSLIDG 590



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +++V+ SL    R     D++D     G +P    F+SLI G     ++   F   D M+
Sbjct: 549 FSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAME 608

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+  YN L+    K    +  + +F EM++  VKPN  TY  +L     AG+  
Sbjct: 609 VVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 164 PVYAIVRDMTAAG 176
                  +M  +G
Sbjct: 669 AARKKFHEMIESG 681



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 115/311 (36%), Gaps = 42/311 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+    ++        ++ +M   GV+P    ++ +I    K   +        QM 
Sbjct: 268 YSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMT 327

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  PD   Y+ +I          +A ++F EMKK  + PN  T    L +    G+  
Sbjct: 328 TDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSK 387

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                   MTA G   D F Y  L+  + ++   AD     +I L      ++S++++G 
Sbjct: 388 EAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFAD-----MIGL------FNSMKSNG- 435

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                              A   H           V+ +  HA A+   V     +   +
Sbjct: 436 ------------------IAANCH-----------VFTILIHAYAKRGMVDDAMLIFTEM 466

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYT 342
           ++   SPDV      I  +   G + +  + F   +     P   +Y+++++G  M G  
Sbjct: 467 QQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGL 526

Query: 343 PKGMQLAQDTL 353
            K  +L  + +
Sbjct: 527 VKAKELVSEMI 537



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 10/229 (4%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PDV  Y+ +I        + +A  +F EM +  VKP+  TY  +++A   A  +D    +
Sbjct: 263 PDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 169 VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENE 228
           +R MT  GA  D   Y+ +I  +   + R  + A    E+ ++    + V  +   A   
Sbjct: 323 LRQMTTDGAQPDTVTYSCMIHGYAT-LGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLC 381

Query: 229 MMGVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
             G SKE  E ++  TA+  H+   F       Y    H  A       M  L   +K +
Sbjct: 382 KHGRSKEAAEFFDSMTAKG-HKPDIF------SYCTLLHGYASEGCFADMIGLFNSMKSN 434

Query: 287 RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
             + + ++    I  Y   G +D+   +F +       P    Y+T++ 
Sbjct: 435 GIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIS 483



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 6/180 (3%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV-QPTRDLFHSLIVGTMKGSRLQ 93
           R    N + Y++++            +++  +M+  G+ +P    F S+I    K  R+ 
Sbjct: 504 RGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVM 563

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           D     D     G  P V  +N LI   G C     D+A +I + M+   V+P+  TY  
Sbjct: 564 DAHDIFDLATDIGERPGVITFNSLID--GYCLVGKMDKAFKILDAMEVVGVEPDIVTYNT 621

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           LL+     G+++    + R+M   G   +   Y G++ A   +  R      K  E++E 
Sbjct: 622 LLDGYFKNGRINDGLTLFREMQRKGVKPNTVTY-GIMLAGLFRAGRTVAARKKFHEMIES 680


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 127/298 (42%), Gaps = 7/298 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           ++  YNT++  L+   R      + ++M+ +G  P    +++++ G  K +R+++  +  
Sbjct: 43  DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 102

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +QM   G  PDV  Y  +I+   K    D+A R+ ++M +   +PN  TY  L++     
Sbjct: 103 EQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW-SSV 218
           G LD    +VR MT  G   +   Y  ++  H     R  D+A ++ + +E+S      V
Sbjct: 163 GDLDGAVELVRKMTERGYRPNAITYNNIM--HGLCSGRKLDSALQLFKEMEESGSCPPDV 220

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
            T     ++ +     ++   L   E +  +G   S  +  Y    H   +   +     
Sbjct: 221 FTYSTIVDSLVKSGKVDDACRL--VEAMVSKG--CSPNVVTYSSLLHGLCKAGKLDEATA 276

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           LL+ + +   SP++      I  +   G ID  + + E+ +     P    Y  L++ 
Sbjct: 277 LLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 334



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 158/410 (38%), Gaps = 51/410 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T+V SL    +      + + M+  G  P    + SL+ G  K  +L +      +M 
Sbjct: 223 YSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 282

Query: 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            +G  P++  YN +I   G CK    D+A  + EEM     +PN  TY  LL+A    G+
Sbjct: 283 RSGCSPNIVTYNTIID--GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 340

Query: 162 LDPVYAIVRDMTAAG---------AGLDKFC-------YAGLITAHTNK--IPRADDTAT 203
            +    +V  M   G         + LD FC          L+++   K  +P      T
Sbjct: 341 AEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNT 400

Query: 204 KIIELVEQSKGWSSV----ETSGNNAENEMMGVSK--------------EELYNLPTAEY 245
            I  L + +K    V    +   NN   +++  +                EL+NL     
Sbjct: 401 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLI---- 456

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
             +  G    L+T   +    C   +  QA   L EM +K   SPD+      I     S
Sbjct: 457 --QESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKS 514

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSP 365
             +D  +K+F   + S+   P ++  ++V  ++  +  + M  A + L  +  +N F  P
Sbjct: 515 KRVDRAYKLFLQML-SDGLAPDDVTYSIVISSLCKW--RFMDEANNVL-ELMLKNGF-DP 569

Query: 366 RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415
              +   L+    K+G    A  I  L+ ++   P +     + + L  R
Sbjct: 570 GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 619



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 40  NASEYNTVVTSLTSQRRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   YN++V  L   RRF    +LLR++       G  P    ++++I G  K  R+   
Sbjct: 464 NLVTYNSLVHGLCKSRRFDQAEYLLREMTRK---QGCSPDIITYNTVIDGLCKSKRVDRA 520

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +    QM ++G  PD   Y+ +IS   K +  D+A  + E M K    P   TY  L++ 
Sbjct: 521 YKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDG 580

Query: 156 CAAAGQLDPVYAIVRDMTAAGA 177
               G LD    I++ + + G+
Sbjct: 581 FCKTGNLDKALEILQLLLSKGS 602



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 4/188 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     +A N   YNTV+       R      + + M++ G  P    + ++I G  K 
Sbjct: 68  EEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKL 127

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +     D+M   G  P+V  Y  L+    +  + D A+ +  +M +   +PN  TY
Sbjct: 128 DQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITY 187

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAG-LDKFCYAGLITAHTNKIPRADDTATKIIEL 208
             +++   +  +LD    + ++M  +G+   D F Y+ ++ +   K  + DD A +++E 
Sbjct: 188 NNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLV-KSGKVDD-ACRLVEA 245

Query: 209 VEQSKGWS 216
           +  SKG S
Sbjct: 246 M-VSKGCS 252



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 3/173 (1%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
            E    + Y  N   YN+++     +        +   M+  G  P    ++++I G  K
Sbjct: 348 VEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 407

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            +++ +     +QM +N  +PD+  +N +I    K    D A  +F  +++    PN  T
Sbjct: 408 ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 467

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMT-AAGAGLDKFCYAGLI--TAHTNKIPRA 198
           Y  L++    + + D    ++R+MT   G   D   Y  +I     + ++ RA
Sbjct: 468 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 520



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 7/194 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+    N   +   +NT++ ++    R  +  ++++ +   G  P    ++SL+ G  K 
Sbjct: 419 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 478

Query: 90  SRL-QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            R  Q  +  R+  +  G  PD+  YN +I    K K  D+A ++F +M    + P+  T
Sbjct: 479 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 538

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKII 206
           Y  ++++      +D    ++  M   G       Y  LI     T  +    D A +I+
Sbjct: 539 YSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNL----DKALEIL 594

Query: 207 ELVEQSKGWSSVET 220
           +L+     +  V T
Sbjct: 595 QLLLSKGSYPDVVT 608



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 40/263 (15%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    ++++I G  K  RL D     ++M  NGF P+V  YN ++    K    + A+ +
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            E+M      P+  +Y  ++N      Q+D    ++  M   G   +   Y  L+     
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC- 160

Query: 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFL 253
           ++   D     + ++ E+                                       G+ 
Sbjct: 161 RVGDLDGAVELVRKMTER---------------------------------------GYR 181

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
              +T  ++    C+  K   A++   EM +     PDV+     +   + SG +D+  +
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 241

Query: 314 VFEDYICSEKFPPAELYATLVEG 336
           + E  +     P    Y++L+ G
Sbjct: 242 LVEAMVSKGCSPNVVTYSSLLHG 264



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 5/194 (2%)

Query: 20  RRFFVTSAGAEEYARRNYAN-NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           RRF        E  R+   + +   YNTV+  L   +R      ++  M+ DG+ P  D+
Sbjct: 479 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPD-DV 537

Query: 79  FHSLIVGTMKGSRLQD-TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            +S+++ ++   R  D      + M  NGF P    Y  LI    K  N D+A+ I + +
Sbjct: 538 TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 597

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
                 P+  T+   ++  +  G+L     ++  M  AG   D   Y  L+    +   R
Sbjct: 598 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDA-SR 656

Query: 198 ADDTATKIIELVEQ 211
            +D A  + E++ Q
Sbjct: 657 TED-AVDLFEVMRQ 669


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ S+   +R +    ++ D++ +G +P    + +LI    +    +D      QMK
Sbjct: 316 YNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMK 375

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQL 162
             G    V +YN L+S+C      D+A  IF++MK     +P+  T+  L+   +  G++
Sbjct: 376 GKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRV 435

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD---TATKIIEL 208
               A +R+M  AG     F    LI  +  K  + DD   T  +++EL
Sbjct: 436 SEAEAALREMREAGFEPTLFVLTSLIQCY-GKAKQVDDVVRTFEQVLEL 483



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y++M   GV+P   +++ L+    K  R          + +NGF P+ + Y  LI   
Sbjct: 299 NIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAY 358

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLD 180
           G+ +  + A+ I+ +MK   ++     Y  LL+ CA  G +D  + I +DM ++G    D
Sbjct: 359 GRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPD 418

Query: 181 KFCYAGLITAHT 192
            + ++ LIT ++
Sbjct: 419 SWTFSSLITVYS 430



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 68  MLDGVQPTRD-LFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +L+ ++PTR+ + +++ +   + S+ L+ +    D+M   G  PD A +  LIS   +C 
Sbjct: 163 LLETLKPTREVILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCG 222

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+  FE+M  + ++P+  T   +++A   AG ++   ++          +D   ++
Sbjct: 223 LPKRAVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFS 282

Query: 186 GLI 188
            LI
Sbjct: 283 TLI 285



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 62  DVYDDMMLDGV-QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +++ DM   G  +P    F SLI       R+ +      +M+  GF P + V   LI  
Sbjct: 404 EIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQC 463

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            GK K  D  +R FE++ +  ++P+ +   CLLN
Sbjct: 464 YGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLN 497



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 15/263 (5%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + ++ M   G++P      ++I    +   ++      D+ +   +  D   ++ LI + 
Sbjct: 229 EWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIY 288

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G   N D  + I+EEMK   VKPN   Y  LL++   A +      I +D+ + G   + 
Sbjct: 289 GYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNW 348

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-----AENEMMGVSKEE 236
             YA LI A+     R  + A  I   + + KG        N      A+   +  + E 
Sbjct: 349 STYAALIRAYGRA--RYGEDALVIYRQM-KGKGLELTVILYNTLLSMCADIGYVDEAFEI 405

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVM 296
             ++ ++          S L+TVY      C  + + +A    L  +++    P ++++ 
Sbjct: 406 FQDMKSSGTCEPDSWTFSSLITVY----SCCGRVSEAEAA---LREMREAGFEPTLFVLT 458

Query: 297 QNIRCYLHSGDIDNGHKVFEDYI 319
             I+CY  +  +D+  + FE  +
Sbjct: 459 SLIQCYGKAKQVDDVVRTFEQVL 481


>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 766

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 142/328 (43%), Gaps = 23/328 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDM-MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           +NT++  L    R     ++   M M +   P    ++ LI G  +  +L+       +M
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRM 432

Query: 103 KANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           K +G  PDV   N ++   G C++   + A+  F +M+K  VK N  TY+ L++AC +  
Sbjct: 433 KEDGIKPDVVTVNTIVG--GMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLS 490

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
            ++        M  AG   D   Y  LI+       R D  A +++E + +  G  S++ 
Sbjct: 491 NIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQ--VRRDHDAIRVVEKLRE--GGFSLDL 546

Query: 221 SGNNAENEMMGV-----SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
               A N ++G+     + E++Y + T      + G     +T Y+       + KD ++
Sbjct: 547 L---AYNMLIGLFCDKNNAEKVYEMLTD---MEKEGMKPDSIT-YNTLISFFGKHKDFES 599

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF-PPAELYATLV 334
           +E ++E +++D   P V      I  Y   G++    K+F+D     K  P   +Y  L+
Sbjct: 600 VERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILI 659

Query: 335 EG-AMFGYTPKGMQLAQDTLVNMNSRNI 361
              +  G   + + L ++  + M   N+
Sbjct: 660 NAFSKLGNFGQALSLKEEMKMKMVRPNV 687



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 18/187 (9%)

Query: 9   RHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM 68
           RHH   G  +   FF+      +  +     N   Y T++ +  S          +D M+
Sbjct: 453 RHH---GLNMAVLFFM------DMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKML 503

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
             G  P   ++++LI G  +  R  D     ++++  GF  D+  YN LI +     N++
Sbjct: 504 EAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAE 563

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM-------TAA--GAGL 179
           +   +  +M+K  +KP+  TY  L++        + V  ++  M       T A  GA +
Sbjct: 564 KVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVI 623

Query: 180 DKFCYAG 186
           + +C  G
Sbjct: 624 EAYCSVG 630



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YNT+++     + F  +  + + M  D + PT   + ++I        L +    F+D  
Sbjct: 584 YNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMG 643

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             +   P+  +YN LI+   K  N  QA+ + EEMK   V+PN +TY  L        Q 
Sbjct: 644 LRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQA 703

Query: 163 DPVYAIVRDMT 173
           + +  ++ +M 
Sbjct: 704 ETLLKLMDEMV 714


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 135/316 (42%), Gaps = 24/316 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++     +    + + V++ +   G++P+   F++L+ G ++ 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRL 173

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLIN--GLCKESKMDDANELFDEMLDKGLVPNGV 231

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++    +G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 232 TFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 291

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 292 -----SMKGLKPDKITYTTLID---GCCKEG--DLETA-FEHRK-RMIQENIRLDDVAYT 339

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
           A     C E + + A + L EML    K PD       I  +   GD+  G K+ ++   
Sbjct: 340 ALISGLCQEGRYLDAEKVLREMLSAGLK-PDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 398

Query: 321 SEKFPPAELYATLVEG 336
               P    Y  L+ G
Sbjct: 399 DGHVPSVVTYNVLMNG 414


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 1/175 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  +  +        ++++M   G+ P    ++S+I G  K  RL DT +F ++MK
Sbjct: 136 YNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK 195

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN LI+   K     + +  F EMK+  +KPN  +Y  L++A      + 
Sbjct: 196 SMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQ 255

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
                  DM   G   ++  Y  L+ A+  KI    D      E+ +    W+ V
Sbjct: 256 QALKFYVDMRRLGLVPNEHTYTSLVDAYC-KIGNLSDAFRLADEMSQVGVEWNVV 309



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           ++  + DM+  G +PT   ++ +I    K   ++      ++MK  G +PD   YN +I 
Sbjct: 117 MKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMID 176

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
             GK    D  +  FEEMK    +P+  TY  L+N     G+L       R+M  +G   
Sbjct: 177 GYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKP 236

Query: 180 DKFCYAGLITA 190
           +   Y+ L+ A
Sbjct: 237 NVVSYSTLVDA 247



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D+M   GV+     + +LI G     R+++      +M   G +P++A Y  LI    K 
Sbjct: 297 DEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKA 356

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           KN D+A+ + +EMK   +KP+   Y   + +     +++    ++ +M   G   + F Y
Sbjct: 357 KNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIY 416

Query: 185 AGLITAH 191
             L+ A+
Sbjct: 417 TTLMDAY 423



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 2/128 (1%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+E ++     N   Y  ++  L    R     +++  M+  GV P    + +LI G +K
Sbjct: 296 ADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVK 355

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVY-NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
              +       D+MK  G  PD+ +Y  ++ S+CG  +  + A  +  EM++  +K N  
Sbjct: 356 AKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCG-LEKIEAAKVVMNEMQEKGIKANTF 414

Query: 148 TYVCLLNA 155
            Y  L++A
Sbjct: 415 IYTTLMDA 422



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 57/149 (38%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T+V +   +         Y DM   G+ P    + SL+    K   L D F   
Sbjct: 237 NVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLA 296

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G   +V  Y  LI      +   +A  +F +M    V PN  +Y  L++    A
Sbjct: 297 DEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKA 356

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +D    ++ +M   G   D   Y   I
Sbjct: 357 KNMDRALELLDEMKGRGIKPDLLLYGTFI 385


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/374 (18%), Positives = 145/374 (38%), Gaps = 35/374 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ +RR    +   +  ++  L  + +      V D M+  G++P    ++ LI    K 
Sbjct: 217 EDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKE 276

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE--VKPNGQ 147
             +++    R +M   G  PDV  YN LI+        D+A+   EEM + +  V+P+  
Sbjct: 277 GSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVV 336

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY----AGLITAHTNKIPR------ 197
           T+  +++     G++     +   M   G   +   Y     G +  H  K+        
Sbjct: 337 TFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDEL 396

Query: 198 -----ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG-- 250
                  D+ T  I +   SK W               G+  E  + +P    + ++G  
Sbjct: 397 AISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMM 456

Query: 251 ----GFLSRL-------LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
               G  + +          Y    H   +  D++ ++ L++ +  +  +PD       I
Sbjct: 457 ERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLI 516

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNS 358
             Y   GD++   +V +    S   P   ++ +L++G +  G T K ++L  +    M +
Sbjct: 517 NMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHE----MRA 572

Query: 359 RNIFLSPRMGSDLL 372
           +N+   P++ S ++
Sbjct: 573 KNVAFDPKIISTII 586



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 1/167 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L          ++ D+M   GVQP   ++  L+ G  +  R QD     + M 
Sbjct: 161 YGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMS 220

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV ++  LI    K   + +A ++ + M +  ++PN  TY  L+N+    G + 
Sbjct: 221 RRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVR 280

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               + ++M   G   D   Y  LI A  + +   D+  + + E+++
Sbjct: 281 EALTLRKEMDDKGVAPDVVTYNTLI-AGLSGVLEMDEAMSFLEEMIQ 326



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFL--LRDVYDDMMLDG---VQPTRDLFHSLIVGTMKGSRLQD 94
           +A  YNTV+ +L  +    L   R +  DM  +     +P    + +++ G     R  +
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCL 152
                  M+A+G   DV  Y  LI   G C  S  D A+ + +EM    V+PN   Y CL
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIR--GLCDASELDAALELLDEMCGSGVQPNVVVYSCL 199

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           L     +G+   V  +  DM+  G   D   + GLI
Sbjct: 200 LRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLI 235



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++       R+  +  V++DM   G++P   +F  LI    K  +       +
Sbjct: 192 NVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVK 251

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M   G  P+V  YN LI+   K  +  +A+ + +EM    V P+  TY  L+   +  
Sbjct: 252 DMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGV 311

Query: 160 GQLDPVYAIVRDM 172
            ++D   + + +M
Sbjct: 312 LEMDEAMSFLEEM 324


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 138/337 (40%), Gaps = 33/337 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   YN+++ +L   +      +V + M+ +GV P    ++S++ G     
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++   F  +M+++G  PDV  Y+ L+    K     +A +IF+ M K  +KP   TY 
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            LL   A  G L  ++ ++  M   G   D + ++ LI A+ N+  + D       ++ +
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQ-GKVDQAMLVFSKMRQ 399

Query: 211 QSKGWSSVE--------TSGNNAENEMM--------GVS------KEELYNLPTAEYVHR 248
           Q    ++V               E+ M+        G+S         ++ L T     R
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459

Query: 249 RGGF----LSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
                   L R + +  + F++     C E + +++ E L E++ +    P+V      I
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES-EKLFELMVRIGVKPNVITYNTLI 518

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             Y  +G +D   K+    +     P    Y+TL+ G
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y  V+  L    R       ++ M+ +G+ P   +++SLI G    ++ +      
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G   +   +N +I    K     ++ ++FE M +  VKPN  TY  L+N    A
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           G++D    ++  M + G   +   Y+ LI  +  KI R +D      E+  +S G S
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC-KISRMEDALVLFKEM--ESSGVS 578



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 149/384 (38%), Gaps = 32/384 (8%)

Query: 40  NASEYNTVVTSLT----SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   YN ++  L     SQ    LL  + DD    G  P    + ++I G  K       
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRG-GGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +    +M   G LPDV  YN +I+   K +  D+A+ +   M K  V P+  TY  +L+ 
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
             ++GQ       ++ M + G   D   Y+ L+  +  K  R  + A KI + + +    
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYS-LLMDYLCKNGRCME-ARKIFDSMTKRGLK 333

Query: 216 SSVETSGN--------NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
             + T G          A  EM G     L +L     +H      S L+  Y       
Sbjct: 334 PEITTYGTLLQGYATKGALVEMHG-----LLDLMVRNGIHPDHYVFSILICAY------A 382

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            + K  QAM    +M ++   +P+       I     SG +++    FE  I     P  
Sbjct: 383 NQGKVDQAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            +Y +L+ G     T    + A++ ++ M  R I L+    +   ++ +  K G    + 
Sbjct: 442 IVYNSLIHGLC---TCNKWERAEELILEMLDRGICLNTIFFNS--IIDSHCKEGRVIESE 496

Query: 388 YIWDLMQARKITPSLPAVEAYYNG 411
            +++LM    + P++       NG
Sbjct: 497 KLFELMVRIGVKPNVITYNTLING 520



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L +  ++    ++  +M+  G+      F+S+I    K  R+ ++    + M 
Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  YN LI+        D+A+++   M    +KPN  TY  L+N      +++
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
               + ++M ++G   D   Y  ++     T +   A +   +I E
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   +N+++ S   + R      +++ M+  GV+P    +++LI G     
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +       M + G  P+   Y+ LI+  G CK S  + A+ +F+EM+   V P+  T
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLIN--GYCKISRMEDALVLFKEMESSGVSPDIIT 583

Query: 149 YVCLLNA 155
           Y  +L  
Sbjct: 584 YNIILQG 590



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 51/253 (20%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++       +      +   M+  G++P    + +LI G  K SR++D     
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 100 DQMKANGFLPDVAVYN---------------------------------YLISVCGKCKN 126
            +M+++G  PD+  YN                                 Y I + G CKN
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629

Query: 127 --SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
             +D A+++F+ +   ++K   +T+  +++A    G+ D      +D+  A      F  
Sbjct: 630 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE----AKDLFVA------FSS 679

Query: 185 AGLITAH-TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
            GL+  + T ++   +     ++E ++Q   + S+E +G   ++ M+     EL  L   
Sbjct: 680 NGLVPNYWTYRLMAENIIGQGLLEELDQL--FLSMEDNGCTVDSGMLNFIVREL--LQRG 735

Query: 244 EYVHRRGGFLSRL 256
           E + R G +LS +
Sbjct: 736 E-ITRAGTYLSMI 747


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           + +N S YNT++  L  + +    RD+  DM  +G+ P R+ F+ L+ G  K   L++  
Sbjct: 80  FPDNVS-YNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAA 138

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              D M  N  LPDV  Y  LI   G CK+   D+A R+ +EM+  ++ P+  TY  L+N
Sbjct: 139 EVIDIMARNNVLPDVRTYTTLIG--GLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLIN 196

Query: 155 ACAAAGQLDPVYAIVRDMTAAGA 177
            C         + ++ +M   G 
Sbjct: 197 GCFECSSSLKGFELIDEMEGKGV 219



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + +N +V+            +V D M  + V P    + +LI G  K  ++ + F  R
Sbjct: 117 NRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLR 176

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M+    LP V  YN LI+ C +C +S +   + +EM+   VKPN  TY  ++      
Sbjct: 177 DEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKE 236

Query: 160 GQLDPVYAIVRDMTAAGAGLD 180
           G++D     +R M  +G   D
Sbjct: 237 GKMDNAGNELRKMEESGFSPD 257



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 42/291 (14%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ D+M   GV+P    ++ ++   +K  ++ +      +M+ +GF PD   +N L +  
Sbjct: 209 ELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSN-- 266

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK     +A R+ +EM +  +K N  T   +L+      +LD  Y ++   +  G  +
Sbjct: 267 GYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFV 326

Query: 180 DKFCYAGLITAH--------------TNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225
           D+  Y  LI  +                 IP      T I  L    K   S++      
Sbjct: 327 DEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKC---- 382

Query: 226 ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKK 285
            NE++                    G +    T   +    C E +  +A     +M+KK
Sbjct: 383 -NELL------------------ESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKK 423

Query: 286 DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             K PD++     +R     G +D   K+F+ +I   K   A  + T++ G
Sbjct: 424 SFK-PDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISG 473



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/168 (18%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L    +     D  ++++  G+ P +  ++++I+G  +  ++   F FR++M 
Sbjct: 362 YGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMV 421

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
              F PD+   N L+   G C     D+A+++F+         +  T+  +++     G+
Sbjct: 422 KKSFKPDLFTCNILVR--GLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGR 479

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
            +  + ++ +M     G D + +  +++A  +  ++  A++  + I+E
Sbjct: 480 FEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIVE 527



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 3/158 (1%)

Query: 34  RRNYANNASEYNTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           R +   N    NT++ +L    S+   +L + ++ D++  GV+   + F+ LI G    +
Sbjct: 3   RLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCIEN 62

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L +      +MK     PD   YN ++ V  K    ++A  +  +MK   + PN  T+ 
Sbjct: 63  KLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFN 122

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L++     G L     ++  M       D   Y  LI
Sbjct: 123 ILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLI 160


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M   G+ P    +++LI    +GS  ++     + MK+ GF+PD   YN L+ V G
Sbjct: 91  LFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYG 150

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K +   +AI +  EM+     P+  TY  L++A A  G L+    +   M   G  LD F
Sbjct: 151 KSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVF 210

Query: 183 CYAGLITAHTNKIPRADDTATKIIE 207
            Y  +++         D++A ++ E
Sbjct: 211 TYTAMLSGFVR--TGKDESAMRVFE 233



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 149/385 (38%), Gaps = 47/385 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++      RR     +V  +M ++G  P+   ++SLI    +   L++    ++QM 
Sbjct: 142 YNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMV 201

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   DV  Y  ++S   +    + A+R+FEEM+    KPN  T+  L+      G+  
Sbjct: 202 ERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFA 261

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            +  +  ++          C   ++T +T             +  V    G  S E SG 
Sbjct: 262 EMMKVFEEIKICC------CVPDIVTWNT-------------LLAVFGQNGMDS-EVSGV 301

Query: 224 NAENEMMG-VSKEELYNLPTAEYVHRRGGF--------------LSRLLTVYHVAFHACA 268
             E + +G V + + YN   + Y  R G F              ++  L+ Y+    A A
Sbjct: 302 FKEMKRVGFVPERDTYNTLISAY-SRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALA 360

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-A 327
                +  E +L  ++     P+       +  Y +  +I     + E+ ICS    P A
Sbjct: 361 RGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEE-ICSGVIEPHA 419

Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            L  TLV   +       +  A+   + +  +    SP + +   ++A   +    T  N
Sbjct: 420 VLLKTLV---LVNSKCDLLLEAERAFLELKRKG--FSPDLSTLNAMIAIYGRRQMVTKTN 474

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            I + M+    TPSL    A YN L
Sbjct: 475 EILNFMKESGFTPSL----ATYNSL 495



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 12/368 (3%)

Query: 46  TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105
            ++  L  + +  +   + +++  DG +P    + SLI   +   R ++      +M+  
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIR-IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           G  P +  YN +++V GK       I  +FE MK   + P+  TY  L+  C      + 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
             A+  DM + G   DK  Y  L+  +     R    A +++  +E +    S+ T  + 
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVYGKS--RRIKEAIEVLREMEVNGCSPSIVTYNSL 180

Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
                     EE   L   + V R  G    + T   +        KD  AM    EM  
Sbjct: 181 ISAYARDGLLEEAMELKN-QMVER--GIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRT 237

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
              K P++      I+ + + G      KVFE+       P    + TL+  A+FG    
Sbjct: 238 AGCK-PNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLL--AVFG--QN 292

Query: 345 GMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPA 404
           GM  ++ + V    + +   P   +   L++A  + G +  A  ++  M    ITP L  
Sbjct: 293 GMD-SEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLST 351

Query: 405 VEAYYNGL 412
             A    L
Sbjct: 352 YNAVLAAL 359



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 19  GRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           GRR  VT             +  + + YN+++   +    F    +V  +++  G++P  
Sbjct: 465 GRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDI 524

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++++I    +  R+++      +M+ +G +PDV  YN  ++        ++AI +   
Sbjct: 525 ISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCY 584

Query: 137 MKKYEVKPNGQTY 149
           M K+  KPN  TY
Sbjct: 585 MIKHGCKPNQNTY 597



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 5/182 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+ ++ + S  N ++     ++      ++ + M   G  P+   ++SL+    +  
Sbjct: 444 ELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSE 503

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
             + +     ++ A G  PD+  YN +I     C+N    +A  IF EM++  + P+  T
Sbjct: 504 NFERSEEVLKEILAKGIKPDIISYNTVIF--AYCRNGRMKEASHIFSEMRESGLIPDVIT 561

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y   + + AA    +    +V  M   G   ++  Y  +I  +  K+ R DD    I  L
Sbjct: 562 YNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYC-KLNRRDDAIKFISSL 620

Query: 209 VE 210
            E
Sbjct: 621 HE 622


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L  ++R     +++ +M    + P    ++ LI G  K  ++  +    
Sbjct: 251 NVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELV 310

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M++ G   D+  YN L+    K  + DQAI + +E+K   ++PN  TY  L++     
Sbjct: 311 DEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKD 370

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G+L+  Y I +++   G  +  + Y  +I     K
Sbjct: 371 GRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKK 405



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 3/203 (1%)

Query: 11  HKSVGGALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM 68
           + ++  +L +  FVT A     E   +    N   ++ +V +L   R+     ++   MM
Sbjct: 150 YSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
             GV+P    + +++ G    +++       + M   G  P+V  YN +I+   K K  D
Sbjct: 210 KKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVD 269

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A+ +F+EM   ++ P+  TY  L++     G++     +V +M + G  +D   Y  L+
Sbjct: 270 EAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLL 329

Query: 189 TAHTNKIPRADDTATKIIELVEQ 211
            A   K    D   T + E+ +Q
Sbjct: 330 HALC-KNHHLDQAITLVKEIKDQ 351



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 25/241 (10%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           ++ ++I    KG  + D +    +M A G  P+V  ++ L+    K +   QA+ +   M
Sbjct: 149 MYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMM 208

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
            K  VKPN  TY  +++      Q++    I   M   G   + +CY  +I     K  R
Sbjct: 209 MKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKK-KR 267

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-----------EELYNLPTAEYV 246
            D+      E+      W  +          + G+ K           +E+ ++     +
Sbjct: 268 VDEAMNLFKEM-----HWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDI 322

Query: 247 HRRGGFLSRLLTVYHV--AFHACAELKD------VQAMETLLEMLKKDRKSPDVYIVMQN 298
                 L  L   +H+  A     E+KD      V    TL++ L KD +  D Y++ Q 
Sbjct: 323 ITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQE 382

Query: 299 I 299
           I
Sbjct: 383 I 383



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 44  YNTVVTSLTSQRRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YN+++ +L           L++++ D     G+QP    + +LI G  K  RL+D +   
Sbjct: 325 YNSLLHALCKNHHLDQAITLVKEIKDQ----GIQPNVCTYTTLIDGLCKDGRLEDAYVIF 380

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            ++   G+   V  YN +I+  G CK    D+A+ +   M+     P+  +Y  ++ A +
Sbjct: 381 QEILTEGYHITVWTYNVMIN--GLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALS 438

Query: 158 AAGQ 161
             G+
Sbjct: 439 EKGE 442


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 121/310 (39%), Gaps = 45/310 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK- 88
           +E  RR    N   +N V+ +L    +    RDV +DM + G  P    +++LI G  K 
Sbjct: 212 KEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKL 271

Query: 89  --GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
               ++        +M  N   P++  +N LI    K  N   ++++F+EM   +VKPN 
Sbjct: 272 GGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNV 331

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            +Y  L+N     G++    ++   M +AG   +   Y  LI          +D   + +
Sbjct: 332 ISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFC-----KNDMLKEAL 386

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
           ++    KG  +V T+                                     +Y++   A
Sbjct: 387 DMFGSVKGQGAVPTT------------------------------------RMYNMLIDA 410

Query: 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
             +L  +     L E ++++   PDV      I     +G+I+   K+F D + S+  P 
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF-DQLTSKGLPD 469

Query: 327 AELYATLVEG 336
              +  L+EG
Sbjct: 470 LVTFHILMEG 479



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 4/172 (2%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           + +   A  +E    + + N + +N ++              V+ +M+   V+P    ++
Sbjct: 276 KMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYN 335

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMK 138
           SLI G   G ++ +    RD+M + G  P++  YN LI+  G CKN    +A+ +F  +K
Sbjct: 336 SLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN--GFCKNDMLKEALDMFGSVK 393

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                P  + Y  L++A    G++D  +A+  +M   G   D   Y  LI  
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAG 445



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           ++M  +G+ P    ++ LI G  +   ++      DQ+ + G LPD+  ++ L+   G C
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILME--GYC 481

Query: 125 KN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +   S +A  + +EM K  +KP   TY  ++      G L
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521


>gi|384253024|gb|EIE26499.1| hypothetical protein COCSUDRAFT_59031 [Coccomyxa subellipsoidea
           C-169]
          Length = 431

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 1/167 (0%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +++++DM+ +G+ P+   +H+L+    K  + ++       M+  G  P     N L+S 
Sbjct: 53  QEIFEDMVTNGIVPSTVHYHTLMDCQAKAGKAEEAIGTFKAMQQGGLPPTTWSLNILLSA 112

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           C + +   +A  I E++    VK +  T+  LL+A A A  +D  Y + + M  +G   D
Sbjct: 113 CARTRQPVRAKEIMEDLTSQGVKSDVMTWNTLLSAFARAKHIDGAYQVWQQMQQSGVTPD 172

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227
           +F    L  A    +  A     +  + ++Q  G S  E +  + E+
Sbjct: 173 RFTQRALSEAFAGNVAMAAQIVQE-ADWLQQRMGESRNEAASTSGED 218


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D M +  F P++  +N LI+  G CK    D  + +F EM +  +  N  TY+ L+    
Sbjct: 362 DSMGSKSFSPNIVTFNTLIT--GYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFR 419

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G ++    I ++M ++G   D      ++T   +K
Sbjct: 420 KVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK 456



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D M+ DG+QP +  + +++ G  K G  +      
Sbjct: 80  NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 139

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R   + +   PDV +Y+ +I    K      A  +F EM+   + P+  TY C++N   +
Sbjct: 140 RKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCS 199

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +G+      ++++M       D   ++GLI A
Sbjct: 200 SGKWSEAQRLLQEMLVRKISPDVVTFSGLINA 231



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 117/284 (41%), Gaps = 27/284 (9%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
           L  ++P   ++ ++I G  K  R  D      +M+  G  PD+  Y+ +I+  G C +  
Sbjct: 145 LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMIN--GFCSSGK 202

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG-------- 178
             +A R+ +EM   ++ P+  T+  L+NA    G L+    ++++M ++G          
Sbjct: 203 WSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNT 262

Query: 179 -LDKFCYAG-----LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGV 232
            LD  C +G     L      +    D  AT     VE      ++  SG    NE   +
Sbjct: 263 LLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG--LINEGKFL 320

Query: 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292
             EELY     E  HR  G +   +T   +    C + +  +A +    M  K   SP++
Sbjct: 321 EAEELYE----EMPHR--GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSF-SPNI 373

Query: 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                 I  Y  +G +D+G ++F +         A  Y TL+ G
Sbjct: 374 VTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 149/353 (42%), Gaps = 23/353 (6%)

Query: 71  GVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
           G+Q   D+  F+ LI      S+L        ++   GF P +  +N L+   G C    
Sbjct: 8   GLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLH--GLCVEDR 65

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A+ +F +M     KPN  T+  L+N     G++    A++  M   G   ++  Y  
Sbjct: 66  VSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           ++    + + +  DT +  + L+ + +  S ++         + G+ K+  +      ++
Sbjct: 122 IV----DGMCKMGDTVSA-LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFI 176

Query: 247 HRRG-GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
             +  G    ++T   +    C+  K  +A   L EML + + SPDV      I   +  
Sbjct: 177 EMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVR-KISPDVVTFSGLINALVKE 235

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQL---AQDTLVNMNSRNI 361
           GD+++   + ++ I S   P      TL++G    G     +++    Q +++++++ + 
Sbjct: 236 GDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHA 295

Query: 362 F--LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           F  + P + +  +L++     G +  A  +++ M  R I P      +  NGL
Sbjct: 296 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348


>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like [Glycine max]
          Length = 480

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 2/191 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R  ++ +   +N ++  L    +     ++ + M   G++PT   F +LI G  + 
Sbjct: 285 DEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRA 344

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L    +F D+M  NG +PDV  Y  +I+        ++A+++++ M   E  PN  TY
Sbjct: 345 GNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGEIEKALKMYQYMISREQVPNVFTY 404

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             ++     AG+ D   +++++M   G   + F Y  L +   N    AD  A ++I  +
Sbjct: 405 NSIIQGLCMAGKFDEACSMLKEMKTKGCSPNSFVYNTLASCLRNAGKTAD--AHEVIRQM 462

Query: 210 EQSKGWSSVET 220
            +   ++ + +
Sbjct: 463 TEKGKYADIHS 473



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N+      YN ++  L    ++ L+  VY  ++LDG       ++ ++    +  +L   
Sbjct: 221 NFRPFKHSYNAILHGLLVLNQYKLIEWVYQQLLLDGFSSDILTYNIVMYAKYRLGKLDQF 280

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M  NGF PD   +N L+ V GK      A+ +   M++  ++P    +  L++ 
Sbjct: 281 HRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDG 340

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            + AG LD       +M   G   D   Y  +IT + 
Sbjct: 341 LSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYV 377



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 53/303 (17%), Positives = 116/303 (38%), Gaps = 7/303 (2%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G Q T + +H ++    +    +  +   D+M   G       +N LI  CG+   +  
Sbjct: 150 EGYQHTVNAYHLVMNIYAECEEFKALWRLVDEMVEKGLPATARTFNILIRTCGEAGLAKS 209

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
            +  F + K +  +P   +Y  +L+      Q   +  + + +   G   D   Y  ++ 
Sbjct: 210 LVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQLLLDGFSSDILTYNIVMY 269

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
           A   ++ + D        L E  +   S +    N    ++G   + L  L    ++   
Sbjct: 270 AKY-RLGKLDQFHRL---LDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREM 325

Query: 250 GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
           G  +   +  +       +   ++ A +   + + K+   PDV      I  Y+ +G+I+
Sbjct: 326 G--IEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGEIE 383

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG 368
              K+++  I  E+ P    Y ++++G  M G   +   + ++      S N F+   + 
Sbjct: 384 KALKMYQYMISREQVPNVFTYNSIIQGLCMAGKFDEACSMLKEMKTKGCSPNSFVYNTLA 443

Query: 369 SDL 371
           S L
Sbjct: 444 SCL 446


>gi|30689969|ref|NP_197945.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|357528836|sp|Q8GZ63.2|PP397_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g25630
 gi|332006092|gb|AED93475.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 574

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/324 (19%), Positives = 138/324 (42%), Gaps = 9/324 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ ++T Q+++  +  +  ++   G +     F+++I    +   ++D      +MK
Sbjct: 83  YTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMK 142

Query: 104 ANGFLPDVAVYNYLIS---VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G  P  + YN LI    + GK + S + + +  E    +V PN +T+  L+ A     
Sbjct: 143 ELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKK 202

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           +++  + +V+ M   G   D   Y  + T +  K     +T     E+VE+       + 
Sbjct: 203 KVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQK----GETVRAESEVVEKMVMKEKAKP 258

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAMETL 279
           +G      + G  +E         +V R     +   L V++   +   E+ D   ++ +
Sbjct: 259 NGRTCGIVVGGYCREGRVR-DGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEV 317

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
           L ++K+     DV      +  +  +G ++   +VF++ + +   P A  Y+ L +G + 
Sbjct: 318 LTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVR 377

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFL 363
              PK  +   +TL+  +  N+ +
Sbjct: 378 AKEPKKAEELLETLIVESRPNVVI 401



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM------KGSRLQDTFF 97
           Y+TV+ + +S         V+ +M+  GV+P    +  L  G +      K   L +T  
Sbjct: 333 YSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLI 392

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLL 153
              +       P+V ++  +IS  G C N   D A+R+F +M K+ V PN +T+  L+
Sbjct: 393 VESR-------PNVVIFTTVIS--GWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLM 441


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +  +   YN ++ SL ++R+  L   V D ++LD   PT   +  LI  T+    + +
Sbjct: 166 RGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINE 225

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCL 152
                ++M A G LPD+  YN +I   G CK    ++A  +   +     KP+  +Y  L
Sbjct: 226 AMKLLEEMLARGLLPDMYTYNAIIR--GMCKEGMVERAAELITSLTSKGCKPDVISYNIL 283

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           L A    G+ D    +V +M + G   +K  Y+ LI++   +  R D+  + +  ++E+
Sbjct: 284 LRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLC-RFGRIDEAISVLKVMIEK 341



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 1/162 (0%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           AE ++R    N  + Y+ +++SL    R      V   M+   + P    +  LI    K
Sbjct: 301 AEMFSRGCEPNKVT-YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 359

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             RL       D M +NG LPD+  YN +++   K  N++QA+ IF +++     PN  +
Sbjct: 360 EGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSS 419

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  +++A  + G       +V  M + G   D+  Y  LI+ 
Sbjct: 420 YNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISC 461



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S YNT++++L S         +   M+  GV P    ++SLI    +   +++     
Sbjct: 416 NVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLL 475

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M+ +GF P V  YN ++    K +  D AI +F EM +   +PN  TY+ L+     A
Sbjct: 476 DDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFA 535

Query: 160 G 160
           G
Sbjct: 536 G 536



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 3/178 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++++L  + R  L   + D M+ +G  P    +++++    K           ++++
Sbjct: 350 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 409

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V+ YN +IS    C +  +A+ +   M    V P+  TY  L++     G ++
Sbjct: 410 GMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVE 469

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               ++ DM  +G       Y  ++     K+ R DD      E++E  KG    ET+
Sbjct: 470 EAIGLLDDMEQSGFRPTVISY-NIVLLGLCKVRRIDDAIGMFAEMIE--KGCRPNETT 524



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAI 131
           +P    ++++I G  K +R++      ++MKA GFLPD+  YN +I S+C + +    A+
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR-RKLGLAL 192

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++ +++      P   TY  L+ A    G ++    ++ +M A G   D + Y  +I
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 249



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 59/151 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V++      R      V + M   G  P    ++ +I       +L       DQ+ 
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLL 199

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +  +P V  Y  LI         ++A+++ EEM    + P+  TY  ++      G ++
Sbjct: 200 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 259

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               ++  +T+ G   D   Y  L+ A  N+
Sbjct: 260 RAAELITSLTSKGCKPDVISYNILLRAFLNQ 290



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 67/161 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    +   YN ++  +  +       ++   +   G +P    ++ L+   +  
Sbjct: 231 EEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQ 290

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  +      +M + G  P+   Y+ LIS   +    D+AI + + M + E+ P+  +Y
Sbjct: 291 GKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSY 350

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L++A    G+LD    I+  M + G   D   Y  ++ A
Sbjct: 351 DPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAA 391


>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 52/275 (18%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVCGKCKNSDQAI 131
           QP + +++ L+   +    L   F   ++MK +  +  D   YN LI  CG+ K  + A+
Sbjct: 389 QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDAL 448

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYA----G 186
            +FEEMK   +KPN  ++  LL++C    +++  +    +M    G   D F Y+    G
Sbjct: 449 NLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNG 508

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           + T H+N+     D   + I L+EQ      ++ +G    +E++                
Sbjct: 509 IKTNHSNR-----DELLRAITLLEQ------IQETGQFKPDEIL---------------- 541

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQ-AMETLLEMLKKDRKSPDV-YIVMQNIRCYLH 304
                        Y+    AC +  ++Q  ME   EM  K  +   V Y ++  I+ Y  
Sbjct: 542 -------------YNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYGIL--IKAYGK 586

Query: 305 SGDIDNGHKVFEDYICSEKFPPAEL-YATLVEGAM 338
             D++   K+FE+ +  +K P  ++ Y  LV+  +
Sbjct: 587 QNDLNGAFKIFEE-MKQKKIPINDVTYGCLVDACV 620



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P   L++SLI   +K + +Q       +MK     P    Y  LI   GK  + + A +
Sbjct: 536 KPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFK 595

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           IFEEMK+ ++  N  TY CL++AC    +LD     +  M +    ++   Y  +I    
Sbjct: 596 IFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIDQMKSQNLPINTVLYTTIIKGFC 655

Query: 193 NKIPRADDTATKIIELVEQS 212
            K+ + ++ A K  +L++QS
Sbjct: 656 -KLNQTEE-AIKYFDLMKQS 673



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 41/188 (21%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++     ++R     +++++M L G++P R  F+SL+   +K +++   + + ++M+
Sbjct: 431 YNTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMR 490

Query: 104 ---------------ANG--------------------------FLPDVAVYNYLISVCG 122
                           NG                          F PD  +YN LI  C 
Sbjct: 491 KQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACV 550

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K     + + +F EMK  +++P+  TY  L+ A      L+  + I  +M      ++  
Sbjct: 551 KFNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDV 610

Query: 183 CYAGLITA 190
            Y  L+ A
Sbjct: 611 TYGCLVDA 618



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 47/170 (27%)

Query: 63  VYDDMMLDGV---QPTRDLFHSLIVGTMKGSRLQDT----FFFRDQMKANGFLPDVAVYN 115
           +++ ++ +GV    PT   F+ LI    + S+++       F RDQ K     P +   N
Sbjct: 269 IFNQVLYEGVINLHPTDIFFNKLIDYAFRKSQVEMAEYLLVFMRDQAKIQ---PTIVTIN 325

Query: 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV------------------------- 150
            +I    K    ++A + FE +K  + KP+  TY                          
Sbjct: 326 TMIDQYFKNNQREKAWKTFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYK 385

Query: 151 -----------CLLNACAAAGQLDPVYAIVRDMTAAGA-GLDKFCYAGLI 188
                      CLL+AC  AG L+  + ++ +M  +    LD+  Y  LI
Sbjct: 386 QYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLI 435


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YNT++      +R     +++D+M L GV      +++LI G  K  R++D   
Sbjct: 480 ARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQ 539

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             DQM   G  PD   YN L++   K  +  +A  I + M      P+  TY  L++   
Sbjct: 540 LMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLC 599

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            AG++     ++R +   G  L    Y  +I A
Sbjct: 600 KAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQA 632



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 71/147 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ SL S R+     ++  +M L+G      ++++LI G  K  R+++     D+M+
Sbjct: 451 YNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEME 510

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   D   YN LI    K K  + A ++ ++M    ++P+  TY  LL      G + 
Sbjct: 511 LQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIK 570

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               IV+ MT++G   D   YA LI+ 
Sbjct: 571 KAADIVQTMTSSGCNPDIVTYATLISG 597



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 44/322 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++++ L           + D M+     P    ++++I    K +R+ +       + 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G LPDV  +N LI       N   A+ +FEEMK    +P+  TY  L+++  ++ +L+
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLE 465

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               ++++M   G   +   Y  LI        +  + A +I +                
Sbjct: 466 EALNLLKEMELNGCARNVVIYNTLIDGFCKN--KRIEEAEEIFD---------------- 507

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
             E E+ GVS++ +                      Y+       + K V+    L++ +
Sbjct: 508 --EMELQGVSRDSV---------------------TYNTLIDGLCKSKRVEDAAQLMDQM 544

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
             +   PD +     +  +  +GDI     + +    S   P    YATL+ G       
Sbjct: 545 IMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLC---KA 601

Query: 344 KGMQLAQDTLVNMNSRNIFLSP 365
             +Q+A   L ++  + + L+P
Sbjct: 602 GRVQVASRLLRSIQMKGMVLTP 623



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   +N+++  L          D++++M   G +P    ++ LI       +L++     
Sbjct: 412 DVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLL 471

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M+ NG   +V +YN LI   G CKN   ++A  IF+EM+   V  +  TY  L++   
Sbjct: 472 KEMELNGCARNVVIYNTLID--GFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLC 529

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADD 200
            + +++    ++  M   G   DKF Y  L+T    T  I +A D
Sbjct: 530 KSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAAD 574



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 63/144 (43%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++     Q R         + + +G +P +  +++L+ G  K    +      D M  
Sbjct: 277 NVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLL 336

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  PD+  YN LIS   K    ++A++I ++M   +  PN  TY  ++++     ++D 
Sbjct: 337 GGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDE 396

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
              I R +T+ G   D   +  LI
Sbjct: 397 ATEIARLLTSKGILPDVCTFNSLI 420



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    +  L+   +  M+   ++     F+ LI    K  +++      ++M 
Sbjct: 171 YNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMP 230

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PD   +  ++    +  N D A+RI E+M +Y       T   L+N     G++D
Sbjct: 231 SYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRID 290

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
              + +++  + G   D+F Y  L+
Sbjct: 291 QALSFIQEAVSEGFRPDQFTYNTLV 315



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 4/160 (2%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
            RR   ++ S +N ++ +L    +      + ++M   G+ P    F +++ G ++G  L
Sbjct: 195 VRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNL 254

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYV 150
                 ++QM   G        N LI+  G CK    DQA+   +E      +P+  TY 
Sbjct: 255 DGALRIKEQMVEYGCPCTDVTVNVLIN--GFCKQGRIDQALSFIQEAVSEGFRPDQFTYN 312

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L+N     G       +V  M   G   D + Y  LI+ 
Sbjct: 313 TLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISG 352



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 42/230 (18%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +  + ++  YNT++  L   +R      + D M+++G++P +  ++SL+    K 
Sbjct: 507 DEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKT 566

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK------------------------ 125
             ++        M ++G  PD+  Y  LIS  G CK                        
Sbjct: 567 GDIKKAADIVQTMTSSGCNPDIVTYATLIS--GLCKAGRVQVASRLLRSIQMKGMVLTPH 624

Query: 126 -------------NSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAAAGQLDPVYAIVRD 171
                         + +A+R+F EM      P+  TY +     C   G +        +
Sbjct: 625 AYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVE 684

Query: 172 MTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           M   G  + +F  + ++ A        DDT  K+++++ +   +S  E S
Sbjct: 685 MIERG-NIPEF-SSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFSEREIS 732



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + + M+  G   T    + LI G  K  R+     F  +  + GF PD   YN L++   
Sbjct: 260 IKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLC 319

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  ++  A+ + + M    + P+  TY  L++     G+++    I+  M +     +  
Sbjct: 320 KIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAV 379

Query: 183 CYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
            Y  +I++    N++    D AT+I  L+  SKG
Sbjct: 380 TYNAIISSLCKENRV----DEATEIARLL-TSKG 408


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 2/167 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+             ++  +M   G  P    F++LI G  K   + +       + 
Sbjct: 422 YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLM 481

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +GF+PD+  +  LI         D A   FEEM ++ V+PN QTY  L++   +AG ++
Sbjct: 482 EHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVN 541

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIEL 208
               ++  M   G   D + +  LI +     K+ +A+D    ++  
Sbjct: 542 KAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRF 588



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 2/183 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + +  N   +NT+++  +        + V   +M  G  P    F SLI G    
Sbjct: 443 KEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNT 502

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L D F   ++M   G  P+   YN L+       + ++AI +  +MK   V P+  ++
Sbjct: 503 HQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSF 562

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+ +     ++D    I  DM   G   D + Y  LI A  ++  R  + A +I+   
Sbjct: 563 NALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDE--RRVNKAKEILFAR 620

Query: 210 EQS 212
           E+S
Sbjct: 621 ERS 623



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 138/327 (42%), Gaps = 47/327 (14%)

Query: 12  KSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR---DVYDDMM 68
           +++ GAL RR  V  +G      R      SE   V   + S  R  L R   +V+  M 
Sbjct: 122 RALVGALWRRGPVVLSGRLVAEVRGCGCEVSE-ELVCALVESWGRLGLARYAHEVFVQMP 180

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
             G++P+  ++ + +       R Q       QM A+G  PD   YN L+   G C+   
Sbjct: 181 RLGLRPSTAVYTAYL-------RFQ-------QMPADGCRPDHFTYNSLVH--GVCRRGI 224

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A+R+  +M+   ++PN  TY  L++    AG+++  + ++  M   G    +  Y  
Sbjct: 225 VDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRT 284

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM--GVSKEELYNLPTAE 244
           L+      + R  D A +++        W   ETS + +    M   +SK+++      E
Sbjct: 285 LVHGVFRCLER--DKAYRML------SDWLGHETSLHPSACHTMLYCLSKKDMAK-EAVE 335

Query: 245 YVHR---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNI 299
           +  R   RG  L    T + +      +  +V  +  LL+   K+  +P  DVYI++  I
Sbjct: 336 FEKRMSARGYLLDS--TAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMV--I 391

Query: 300 RCYLHSGDIDN-----GHKVFEDYICS 321
           +  L+  +        GH V +  + S
Sbjct: 392 KSLLNCKNFSKANHYLGHMVLKGLLSS 418



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 125/374 (33%), Gaps = 59/374 (15%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R Y  +++ +  V++          L ++ D  + +G  P  D++  +I   +       
Sbjct: 343 RGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSK 402

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              +   M   G L  V  YN +I    K    D+A  I +EM+     PN  T+  L++
Sbjct: 403 ANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLIS 462

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
             +  G +     +++ +   G   D   +  LI    N   + DD      E+ E    
Sbjct: 463 GYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCN-THQLDDAFVCFEEMAE---- 517

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           W               GV        P A+               Y+V  H       V 
Sbjct: 518 W---------------GVR-------PNAQ--------------TYNVLMHTLCSAGHVN 541

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               LL  +K D  +PD Y     I  +     +D    +F D +     P +  Y +L+
Sbjct: 542 KAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLI 601

Query: 335 EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG-------SDLLLVAAGEKSGGYTTAN 387
           +            L  +  VN     +F   R G       S   +VAA  K G ++ A 
Sbjct: 602 KA-----------LCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAG 650

Query: 388 YIWDLMQARKITPS 401
            + D   +R    S
Sbjct: 651 ELMDKYLSRNAQSS 664



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 107/272 (39%), Gaps = 16/272 (5%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G++P    +  L+ G     R+++ F   D+MK  G  P  A Y  L+    +C   D+
Sbjct: 238 EGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDK 297

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A R+  +   +E   +      +L   +            + M+A G  LD   + G++ 
Sbjct: 298 AYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAF-GIVM 356

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
           +   K     D    + EL++     S ++  GN   +  + V K  L     ++  H  
Sbjct: 357 SCALKCLEVSD----LCELLD-----SFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYL 407

Query: 250 G-----GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
           G     G LS +++ Y++      +   V   E +++ ++     P++      I  Y  
Sbjct: 408 GHMVLKGLLSSVMS-YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSK 466

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            G++ N   V +  +     P    + +L++G
Sbjct: 467 LGNVHNAKVVLKMLMEHGFMPDIITFTSLIDG 498


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D M +  F P++  +N LI+  G CK    D  + +F EM +  +  N  TY+ L+    
Sbjct: 362 DSMGSKSFSPNIVTFNTLIT--GYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFR 419

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G ++    I ++M ++G   D      ++T   +K
Sbjct: 420 KVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK 456



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D M+ DG+QP +  + +++ G  K G  +      
Sbjct: 80  NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 139

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R   + +   PDV +Y+ +I    K      A  +F EM+   + P+  TY C++N   +
Sbjct: 140 RKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCS 199

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +G+      ++++M       D   ++GLI A
Sbjct: 200 SGKWSEAQRLLQEMLVRKISPDVVTFSGLINA 231



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 117/283 (41%), Gaps = 25/283 (8%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNS 127
           L  ++P   ++ ++I G  K  R  D      +M+  G  PD+  Y+ +I+  C   K S
Sbjct: 145 LSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWS 204

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG--------- 178
            +A R+ +EM   ++ P+  T+  L+NA    G L+    ++++M ++G           
Sbjct: 205 -EAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTL 263

Query: 179 LDKFCYAG-----LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVS 233
           LD  C +G     L      +    D  AT     VE      ++  SG    NE   + 
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG--LINEGKFLE 321

Query: 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
            EELY     E  HR  G +   +T   +    C + +  +A +    M  K   SP++ 
Sbjct: 322 AEELYE----EMPHR--GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSF-SPNIV 374

Query: 294 IVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                I  Y  +G +D+G ++F +         A  Y TL+ G
Sbjct: 375 TFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 149/353 (42%), Gaps = 23/353 (6%)

Query: 71  GVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
           G+Q   D+  F+ LI      S+L        ++   GF P +  +N L+   G C    
Sbjct: 8   GLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLH--GLCVEDR 65

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
             +A+ +F +M     KPN  T+  L+N     G++    A++  M   G   ++  Y  
Sbjct: 66  VSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           ++    + + +  DT +  + L+ + +  S ++         + G+ K+  +      ++
Sbjct: 122 IV----DGMCKMGDTVSA-LNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFI 176

Query: 247 HRRG-GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
             +  G    ++T   +    C+  K  +A   L EML + + SPDV      I   +  
Sbjct: 177 EMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVR-KISPDVVTFSGLINALVKE 235

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQL---AQDTLVNMNSRNI 361
           GD+++   + ++ I S   P      TL++G    G     +++    Q +++++++ + 
Sbjct: 236 GDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHA 295

Query: 362 F--LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           F  + P + +  +L++     G +  A  +++ M  R I P      +  NGL
Sbjct: 296 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 96/437 (21%), Positives = 174/437 (39%), Gaps = 54/437 (12%)

Query: 13  SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           +V G +G  +   ++  E+      A +A  YNT++T             V+++M   G 
Sbjct: 251 NVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGF 310

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
              +  +++L+    K  R ++     ++M  NGF P +  YN LIS   +    D+A+ 
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +  +M +   KP+  TY  LL+    AG+++   +I  +M  AG   +   +   I  + 
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430

Query: 193 NKIPRADDTATKIIELVEQSK---------GWSSVET--SGNNAENEMMGVSKE------ 235
           N+        T+++++ ++            W+++      N  ++E+ GV KE      
Sbjct: 431 NR-----GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 485

Query: 236 ----ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD---RK 288
               E +N   + Y   R G   + +TVY     A     D+    T+L  L +     +
Sbjct: 486 VPERETFNTLISAY--SRCGSFEQAMTVYRRMLDAGVT-PDLSTYNTVLAALARGGMWEQ 542

Query: 289 SPDVYIVMQNIRC-------------YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           S  V   M++ RC             Y +  +I   H + E+       P A L  TLV 
Sbjct: 543 SEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV- 601

Query: 336 GAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
             +       +  A+     +  R    SP + +   +V+   +      AN + D M+ 
Sbjct: 602 --LVCSKCDLLPEAERAFSELKERG--FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKE 657

Query: 396 RKITPSLPAVEAYYNGL 412
           R  TPS+    A YN L
Sbjct: 658 RGFTPSM----ATYNSL 670



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL--IVGTMKGSRLQDTFFFRDQ 101
           Y +++++  +  R+    +V+  M  DG +PT   ++ +  + G M G+         ++
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKM-GTPWNKITSLVEK 269

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MK++G  PD   YN LI+ C +     +A ++FEEMK      +  TY  LL+    + +
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                 ++ +M   G       Y  LI+A+
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAY 359



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 19  GRRFFVTSA-GAEEYAR-RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           GRR  V  A G  +Y + R +  + + YN+++   +    F    ++  +++  G++P  
Sbjct: 640 GRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDI 699

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++++I    + +R++D      +M+ +G +PDV  YN  I         ++AI +   
Sbjct: 700 ISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRY 759

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           M K+  +PN  TY  +++      + D     V D+
Sbjct: 760 MIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 137/359 (38%), Gaps = 16/359 (4%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           +++ L  + R     ++++ +  DG       + SLI       R ++      +M+ +G
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238

Query: 107 FLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
             P +  YN +++V GK     ++   + E+MK   + P+  TY  L+  C         
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225
             +  +M AAG   DK  Y  L+  +  K  R  +    + E+V      S V  +   +
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVY-GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357

Query: 226 ENEMMGVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                G+  E  EL N   AE   +   F       Y            V++  ++ E +
Sbjct: 358 AYARDGMLDEAMELKN-QMAEKGTKPDVF------TYTTLLSGFERAGKVESAMSIFEEM 410

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
           +     P++      I+ Y + G      K+F++       P    + TL+  A+FG   
Sbjct: 411 RNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL--AVFGQN- 467

Query: 344 KGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
            GM      +     R  F+  R   +  L++A  + G +  A  ++  M    +TP L
Sbjct: 468 -GMDSEVSGVFKEMKRAGFVPERETFN-TLISAYSRCGSFEQAMTVYRRMLDAGVTPDL 524



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 1/170 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R ++ + +  N++V+    ++       V D M   G  P+   ++SL+    + +
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
               +     ++ A G  PD+  YN +I    +      A RIF EM+   + P+  TY 
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYN 738

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             + + AA    +    +VR M   G   ++  Y  ++  +  K+ R D+
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYC-KLNRKDE 787



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 69/152 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y +++ +  + +   L+  + +++    ++P   L  +L++   K   L +     
Sbjct: 558 NELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAF 617

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            ++K  GF PD+   N ++S+ G+ +   +A  + + MK+    P+  TY  L+   + +
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRS 677

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
                   I+R++ A G   D   Y  +I A+
Sbjct: 678 ADFGKSEEILREILAKGIKPDIISYNTVIYAY 709


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 124/315 (39%), Gaps = 21/315 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    N   YN +V +L         +DV   M+  G  P    F+SL+ G  K 
Sbjct: 81  EEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR 140

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             + D       M A G  P+V  Y+ LI   G CK+    +A  + EEMK   V P+  
Sbjct: 141 GNVDDARKLLGIMVAKGMRPNVVTYSALID--GLCKSQKFLEAKEVLEEMKASGVTPDAF 198

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKI 205
           TY  L++    A +++    ++R M  +G   D   Y+ +I A   + K+  A  T    
Sbjct: 199 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT---- 254

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV----HRRGGFLSRLLTVYH 261
             L E  K   S +    N   +  G+ K  L  +  A+ +       G  L  ++T   
Sbjct: 255 --LQEMRKQRKSPDVVTYNTVID--GLCK--LGKIAEAQVILDQMQESGDVLPDVVTYST 308

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
           V    C     V+A + LL+ + K   +PDV      I      G ++    + +    +
Sbjct: 309 VINGLCKSDMLVEA-QKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 367

Query: 322 EKFPPAELYATLVEG 336
              P    Y TL+ G
Sbjct: 368 GCAPNVVTYTTLISG 382



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+  L         + + D M   G  P    + ++I G  K  RL++  +    MK
Sbjct: 306 YSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK 365

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  Y  LIS   K +  D+A R+ EEM+     PN  TY  ++N    +G++ 
Sbjct: 366 RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIK 425

Query: 164 PVYAIVRDM 172
               +V+ M
Sbjct: 426 EAQQLVQRM 434



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 127/313 (40%), Gaps = 20/313 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     +A +A  +  ++T++ +      L    D +   G  P    + +LI    + 
Sbjct: 14  EEMKSAGFAPDAFTHTPIITAMANAGD---LDGAMDHLRSMGCDPNVVTYTALIAAFARA 70

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L++     ++M+  G  P++  YN L+    K      A  + ++M +    PN  T+
Sbjct: 71  KKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTF 130

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
             L++     G +D    ++  M A G   +   Y+ LI     + K   A        E
Sbjct: 131 NSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK-------E 183

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR--GGFLSRLLTVYHVAFH 265
           ++E+ K  S V          + G+ K +   +  AE + RR  G   +  + VY    H
Sbjct: 184 VLEEMKA-SGVTPDAFTYSALIHGLCKAD--KIEEAEQMLRRMAGSGCTPDVVVYSSIIH 240

Query: 266 A-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EK 323
           A C   K ++A +TL EM +K RKSPDV      I      G I     + +    S + 
Sbjct: 241 AFCKSGKLLEAQKTLQEM-RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV 299

Query: 324 FPPAELYATLVEG 336
            P    Y+T++ G
Sbjct: 300 LPDVVTYSTVING 312



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMK 88
           +E  ++  + +   YNTV+  L    +    + + D M   G V P    + ++I G  K
Sbjct: 256 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCK 315

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              L +     D+M   G  PDV  Y  +I    KC   ++A  + + MK+    PN  T
Sbjct: 316 SDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 375

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           Y  L++    A ++D    ++ +M  AG      C   L+T +T
Sbjct: 376 YTTLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNT 413


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 11/190 (5%)

Query: 2   RLLQSIYRHHK-SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
           RLL +I +  K  V  +LG++  V     + Y           +N V+       +  L 
Sbjct: 90  RLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYT----------FNIVINCFCCCFQVSLA 139

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
             V   M+  G +P R    SL+ G  + +R+ D     D+M   G+ PD+  YN +I  
Sbjct: 140 LSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDS 199

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K +  + A+  F+E+ +  ++PN  TY  L+N    +G+ +    ++RDM       +
Sbjct: 200 LCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPN 259

Query: 181 KFCYAGLITA 190
              Y+ L+ A
Sbjct: 260 VITYSALLDA 269



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 2/171 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R +   +   Y++++  L    R      ++D M+  G  P    +++LI G  K 
Sbjct: 284 EEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKA 343

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R++D      +M   G + +   YN LI    +  + D+A   F +M  + V P+  TY
Sbjct: 344 KRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTY 403

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRA 198
             LL      G L+    I  DM  +   LD   Y  +I     T K+  A
Sbjct: 404 NILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDA 454



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 3/165 (1%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  +   YN ++ SL   RR     D + ++   G++P    + +L+ G     R  D  
Sbjct: 186 YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAA 245

Query: 97  -FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
              RD +K     P+V  Y+ L+    K     +A  IFEEM +  + P+  TY  L+N 
Sbjct: 246 RLLRDMIKRK-ITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLING 304

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
                ++D    +   M + G   D   Y  LI     K  R +D
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFC-KAKRVED 348



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 67/158 (42%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           +  +R    N   Y+ ++ +     +    ++++++M+   + P    + SLI G     
Sbjct: 250 DMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHD 309

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+ +     D M + G  PDV  YN LI+   K K  +  +++F +M +  +  N  TY 
Sbjct: 310 RIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYN 369

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+      G +D        M + G   D + Y  L+
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILL 407



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 4/153 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++      +R      ++  M   G+      +++LI G  +   +     F  QM 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMD 392

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + G  PD+  YN L+   G C N   ++A+ IFE+M+K E+  +  TY  ++      G+
Sbjct: 393 SFGVSPDIWTYNILLG--GLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGK 450

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           ++  + +   ++  G   D   Y  +++    K
Sbjct: 451 VEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTK 483


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     ++ ++M+ +G+ P    F +LI G  K  ++        QM 
Sbjct: 209 YSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + GFLPD+  YN LI   G C+  D  QA  + EEM    +KP+  TY  L++     G 
Sbjct: 269 SQGFLPDLITYNTLIY--GLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           L+  + + + M      LD+  Y  LI+    +  RA D    + E++
Sbjct: 327 LEITFELRKRMIRENIRLDEVTYTALISGLCRE-GRAGDAEKMLREML 373



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           R F +     +E     Y  +   +N ++     +    L + V+D +    ++P+   F
Sbjct: 115 RYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSF 174

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM 137
           ++L+ G ++   L + F  +  M A G  PDV  Y+ LI+  G CK S  D+A  +  EM
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLIN--GLCKESKMDEANEMLNEM 232

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               + PNG T+  L++     G++D    I + M + G   D   Y  LI
Sbjct: 233 LDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLI 283



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +      RD+ ++M++ G++P +  + +LI G+ K   L+ TF  R +M 
Sbjct: 279 YNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMI 338

Query: 104 ANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                 D   Y  LIS  G C+   +  A ++  EM    +KP+  TY  ++N     G 
Sbjct: 339 RENIRLDEVTYTALIS--GLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGD 396

Query: 162 LDPVYAIVRDMTAAG 176
           +     ++R+M   G
Sbjct: 397 VKTASKLLREMQRNG 411



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           GVQP    +  LI G  K S++ +     ++M  NG +P+   +  LI   G CKN   D
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLID--GHCKNGKVD 258

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            A+ I+++M      P+  TY  L+      G L     +V +M   G   DK  Y  LI
Sbjct: 259 LAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLI 318



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   + T++       +  L  ++Y  M+  G  P    +++LI G  +   L       
Sbjct: 240 NGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLV 299

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ----TYVCLLNA 155
           ++M   G  PD   Y  LI   G CK  D  I    E++K  ++ N +    TY  L++ 
Sbjct: 300 EEMIMKGLKPDKITYTTLID--GSCKEGDLEITF--ELRKRMIRENIRLDEVTYTALISG 355

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD--TATKIIELVEQS 212
               G+      ++R+M   G   D     G  T   N+  +  D  TA+K++  ++++
Sbjct: 356 LCREGRAGDAEKMLREMLTVGLKPDN----GTYTMIMNEFCKTGDVKTASKLLREMQRN 410



 Score = 38.1 bits (87), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 10/196 (5%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           F  ++   G+ P +  +N L+    K      A  +F+ + K+ ++P+  ++  L+N   
Sbjct: 123 FYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKGW 215
             G LD  + +   M A G   D + Y+ LI      +K+  A++   ++++      G 
Sbjct: 183 RLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGV 242

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
           +       + +N  + ++  E+Y    ++      GFL  L+T   + +  C      QA
Sbjct: 243 TFTTLIDGHCKNGKVDLAM-EIYKQMLSQ------GFLPDLITYNTLIYGLCRRGDLGQA 295

Query: 276 METLLEMLKKDRKSPD 291
            + + EM+ K  K PD
Sbjct: 296 RDLVEEMIMKGLK-PD 310


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 37/334 (11%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N+      Y+ ++ +L   RR    RD++++M + G+ PT   + SLI G   G + ++ 
Sbjct: 237 NFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEA 296

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               ++M   G  P+V  +N LI V  K     +A  + E M +  + PN  TY  L+  
Sbjct: 297 KRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEG 356

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIELVEQS- 212
               G L+    +   M + G   D  CY  LI  +  T+K+  A      ++++ ++  
Sbjct: 357 FCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPD 416

Query: 213 -KGWSSVET---SGNNAEN--EMMGVSKEELYNLPTAEYVHRRGGFLSRL---------- 256
            K + ++ T    G    +  ++ GV K  +Y +P   Y++  G FL+ L          
Sbjct: 417 VKTYGALLTGLFQGGKVGDAKKLFGVMK--VYGIPGDLYIY--GIFLNGLCKNGCLFEAM 472

Query: 257 -----LTVYHV-----AFHACAE-LKDVQAMET---LLEMLKKDRKSPDVYIVMQNIRCY 302
                L  Y++      F+   + L     +ET   L E L ++   PDV      I  +
Sbjct: 473 ELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEF 532

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
              G +   + +F+    +   P    YATL+ G
Sbjct: 533 CRGGQVVKANILFQKMEKNGCTPDKITYATLIRG 566



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 6/150 (4%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR Y  +   Y T++  L  + R      ++  M   G  P    + +L+ G  +   + 
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 94  DTFFFRDQMKANG------FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                  +M  +       F P V  Y+ +I    K +  D+A  +FEEMK   + P   
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           +Y  L++     G+ +    +  +M   G 
Sbjct: 279 SYTSLIHGFCCGGKWEEAKRLFNEMVNQGV 308



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +        Y +++       ++   + ++++M+  GVQP    F+ LI    K 
Sbjct: 266 EEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 325

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            ++ +     + M   G +P++  YN LI   G C   D   A  +F  M     +P+  
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIE--GFCLVGDLNSARELFVSMPSKGCEPDVI 383

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            Y  L+N      +++    +   M   G   D   Y  L+T 
Sbjct: 384 CYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 426



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 58/137 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y   +  L      F   ++++ +    ++   + F+ LI G  K  +L+  +   +++ 
Sbjct: 455 YGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP 514

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  YN +I    +     +A  +F++M+K    P+  TY  L+     + +L+
Sbjct: 515 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLE 574

Query: 164 PVYAIVRDMTAAGAGLD 180
            V  ++  M      LD
Sbjct: 575 KVVELLHMMVQRDVSLD 591



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S +  +++ L   + +  +  +Y+ M L G+ P     + L+      +R+ +       
Sbjct: 97  SSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAG 156

Query: 102 MKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +   G++PD+  Y  LI  +C + + S  A+ +F  M+K    PN  TY  L+      G
Sbjct: 157 ILRRGYIPDIVTYTTLIKGLCMEHRISKAAL-LFTRMQKLGCTPNAITYGTLMKGLCRTG 215

Query: 161 QLDPVYAIVRDM 172
            +     + ++M
Sbjct: 216 NISIALKLHQEM 227


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 7/148 (4%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++  M+   V P   +  +LI    K   +Q+     D+++  GFLP +  YN LI   
Sbjct: 361 EMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDELE-RGFLPSLLTYNSLI--I 417

Query: 122 GKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G C+N +  +A R++++M +   +PN  TY  L+      G+ +  YA+ ++M + G   
Sbjct: 418 GLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMSRGCTP 477

Query: 180 DKFCYAGLITAHTNKIPRADDTATKIIE 207
            KF Y  L+ + +   P  DDT   I+E
Sbjct: 478 SKFLYQALVDSLSK--PSHDDTVCTIVE 503



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 106/275 (38%), Gaps = 11/275 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V D+M+  G+ P    + +++        L+      D + A+G  PD  +Y  LI   G
Sbjct: 222 VLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLID--G 279

Query: 123 KC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C  +    A RI +EM    V+PN  TY  ++ AC    +      + R+M  AG   D
Sbjct: 280 YCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEARDLTREMLGAGYVPD 339

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
               A ++          D  A +  E+  Q     SV          +  + K+ +   
Sbjct: 340 TPLCAKVVDVLCQ-----DGKAGEANEMWRQMVK-KSVPPDNTVVSTLIYWLCKKGMVQE 393

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
               +     GFL  LLT   +    C E  ++Q    + + + + R  P+       I+
Sbjct: 394 ARKLFDELERGFLPSLLTYNSLIIGLC-ENGELQEAGRVWDDMVERRYEPNAMTYEALIK 452

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            +   G  + G+ +F++ +     P   LY  LV+
Sbjct: 453 GFCKIGKSNEGYALFKEMMSRGCTPSKFLYQALVD 487



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TV+T+  ++      + ++DD++  G +P   ++  LI G     +LQD     D+M 
Sbjct: 238 YTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMG 297

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           A G  P+   Y+ +I  C K + S +A  +  EM
Sbjct: 298 AAGVQPNEVTYSVVIEACCKERKSTEARDLTREM 331



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 18/190 (9%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLL--------RDVYDDMMLDGVQPTRDLFH 80
           A E  R+    +    NTVV++L     ++L         R ++D++   G  P+   ++
Sbjct: 359 ANEMWRQMVKKSVPPDNTVVSTLI----YWLCKKGMVQEARKLFDELE-RGFLPSLLTYN 413

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           SLI+G  +   LQ+     D M    + P+   Y  LI    K   S++   +F+EM   
Sbjct: 414 SLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMSR 473

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG-LDKFCYAGLITAHTNKIPRAD 199
              P+   Y  L+++ +     D V  IV      G   LD   +   I     K+   +
Sbjct: 474 GCTPSKFLYQALVDSLSKPSHDDTVCTIVEAAALRGQDFLDGHSWEIFI----KKMVDTN 529

Query: 200 DTATKIIELV 209
           +T  K ++LV
Sbjct: 530 ETWKKYLDLV 539


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 1/161 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           EE    +   N   YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K
Sbjct: 359 EEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCK 418

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            +R++      ++M   GF P  A Y  LI   GK K  D A  +F+E+K+     + + 
Sbjct: 419 TNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV 478

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           Y  ++     AG+LD    +  +M+  G   + + Y  L++
Sbjct: 479 YAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS 519



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 2/167 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQ 93
           R     A  YN+++  L  + ++  + ++Y++M  +G   P    + +LI    K  R  
Sbjct: 188 RKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQD 247

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 ++MK NG  P   +Y  +IS+  K  N   A+ +FEEM+    +P+  TY  L+
Sbjct: 248 SAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELI 307

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
                AG++D  Y    +M       D      +I     K  R DD
Sbjct: 308 RGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMIN-FLGKAGRLDD 353



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 2/180 (1%)

Query: 13  SVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           S+  ALG+  R+ +     +E      +++A  Y  ++  L    R     +++D+M   
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKL 505

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P    +++L+ G  +   L +      +M+ +G LPD+  YN +++   K     +A
Sbjct: 506 GCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRA 565

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +   MK   +KP+  +Y  +L+A + AG  +    ++++M A G   D   Y+ ++ A
Sbjct: 566 MEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEA 625



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 46  TVVTSLTSQRRFFLLRDV------YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           T++ SL     FF L +V      +++M     +P    +  LI G  K  R+ + + F 
Sbjct: 269 TMIISL-----FFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFY 323

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AA 158
            +M+     PD  V N +I+  GK    D  +++FEEM      PN  TY  ++ A   +
Sbjct: 324 HEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFES 383

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
             ++  V++    M  +G     F Y+ LI     TN+I +A
Sbjct: 384 KSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKA 425



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 72/161 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +    + Y +++ +L   +R+ L  +++ ++  +    +  ++  +I    K 
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKA 489

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D     D+M   G  P+V  YN L+S   +    D+A+    +M+++   P+  +Y
Sbjct: 490 GRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSY 549

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +LN  A  G       ++ +M  +    D   Y  +++A
Sbjct: 550 NIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSA 590



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y +M  +  +P   + +++I    K  RL D     ++M  +  +P+V  YN +I    +
Sbjct: 323 YHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFE 382

Query: 124 CKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
            K+   +    FE MK   + P+  TY  L++      +++    ++ +M   G      
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPA 442

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            Y  LI A   K  R  D A ++ + ++++ G SS
Sbjct: 443 AYCSLIDA-LGKAKRY-DLACELFQELKENCGSSS 475


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 16  GALGRRFFVTSA-GAEEYAR-RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G LGR   +  A G  E AR   Y +    ++ ++++     RF    D++  M   GV 
Sbjct: 221 GTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVV 280

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFF-FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           P    ++S+I    KG    D    F D+M ANG +PD   YN L+SVC      + A +
Sbjct: 281 PNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQK 340

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +  EM    + P+  TY   L+    AGQ+D    +  +M++     +   Y+ ++  +
Sbjct: 341 LLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGY 399



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT + +L    +  L R V+++M    V P    + +++ G  K + L+D     ++MK
Sbjct: 357 YNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMK 416

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 D   YN L+ +  K  N D+AI   +EM++  +  +  TY  LL+     G  D
Sbjct: 417 LRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYD 476

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  +  +M A     +   Y+ +I  +T
Sbjct: 477 EVRRLFEEMKARNIYPNTLTYSTMIDMYT 505



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 18  LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD 77
           L RR F      EE + +    N   Y+ ++             ++Y++M L  V   R 
Sbjct: 372 LARRVF------EEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRV 425

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            +++L+    K   L +      +M+ +G   DV  YN L+S  GK    D+  R+FEEM
Sbjct: 426 SYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEM 485

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           K   + PN  TY  +++             + R+   A   +D   Y+ +I
Sbjct: 486 KARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAII 536


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 123/298 (41%), Gaps = 8/298 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T++ S    RR     D++  M + G+ P    ++SLI G    S+ ++     
Sbjct: 237 NVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALL 296

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M++   +PD+  +N L+    K     +A  + + M +  V+P+  TY  L+   +  
Sbjct: 297 NEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLR 356

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            ++     +   M   G   D F Y  LI  +  K+ R D+      E++ Q  G +   
Sbjct: 357 SEVVEARKLFDAMITKGCKPDVFSYNILINGYC-KVKRIDEAKQLFNEMIHQ--GLTPNN 413

Query: 220 TSGNNAENEMMGV-SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
            S N   + +  + S  E  NL   + +H  G  L  L T Y +      +         
Sbjct: 414 VSYNTLIHGLCQLGSLREARNL--FKNMHTNGN-LPNLFT-YSILLDGFCKQGYFGKAFR 469

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           L   ++     P++ +    I     SG++ +  K+F +       P A++Y T++ G
Sbjct: 470 LFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIING 527



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           NN S YNT++  L         R+++ +M  +G  P    +  L+ G  K       F  
Sbjct: 412 NNVS-YNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRL 470

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
              M++    P++ +YN LI    K  N   A ++F E+    ++PN Q Y  ++N    
Sbjct: 471 FRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCK 530

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            G LD      R+M   G   D+  Y  +I
Sbjct: 531 EGLLDEALEAFRNMEEDGCPPDEISYNVII 560



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%)

Query: 26  SAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           SA   E    N   +   +N +V ++  + +    + V   M   GV+P    + SL+ G
Sbjct: 293 SALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYG 352

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
               S + +     D M   G  PDV  YN LI+   K K  D+A ++F EM    + PN
Sbjct: 353 YSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPN 412

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +Y  L++     G L     + ++M   G   + F Y+ L+
Sbjct: 413 NVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILL 455



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 63/154 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    + ++   +  +R  L   V   ++  G+QPT   F +LI    K  +        
Sbjct: 132 NIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELF 191

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M A G  PDV  Y  +I+   K   +  A  + ++M++   +PN  TY  ++++    
Sbjct: 192 DDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKD 251

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            +++    I   M   G   D F Y  LI    N
Sbjct: 252 RRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCN 285



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G  G+ F +  A    Y++ N       YN ++ ++         R ++ ++ + G+QP 
Sbjct: 462 GYFGKAFRLFRAMQSTYSKPNLV----MYNILIDAMCKSGNLRDARKLFSELFVKGLQPN 517

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
             ++ ++I G  K   L +       M+ +G  PD   YN +I      K+  +A+++  
Sbjct: 518 AQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIG 577

Query: 136 EMK 138
           EM+
Sbjct: 578 EMR 580



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 79  FHSLIVGTMKGSRLQDTFF-FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           F  L+   +K  +  DT      QM+  G  P++   + LI+     +  D A  +  ++
Sbjct: 100 FTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKI 159

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            K  ++P   T+  L+N     G+      +  DM A G   D + Y  +I
Sbjct: 160 IKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTII 210


>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
          Length = 967

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 48/273 (17%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVCGKCKNSDQAI 131
           QP + +++ L+   +    L   F   ++MK +  +  D   YN LI  CG+ K  ++AI
Sbjct: 370 QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAI 429

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYA----G 186
            +FEEMK+  +KPN  ++  LL++C    +++  +    +M    G   D F Y+    G
Sbjct: 430 SLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFPDNFTYSILVNG 489

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
           + T H+N+     D   + I L+EQ      ++ +G    +E++                
Sbjct: 490 IKTNHSNR-----DELLRAITLLEQ------IQETGQFKPDEIL---------------- 522

Query: 247 HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG 306
                        Y+    AC +  ++Q    L + +K     P        I+ Y    
Sbjct: 523 -------------YNSLIDACVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMN 569

Query: 307 DIDNGHKVFEDYICSEKFPPAEL-YATLVEGAM 338
           D++   ++FE+ +  +K P  ++ Y  LV+  +
Sbjct: 570 DLNGAFRMFEE-MKQKKIPINDVTYGCLVDACV 601



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 2/141 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P   L++SLI   +K + +Q       +MK     P    Y  LI   GK  + + A R
Sbjct: 517 KPDEILYNSLIDACVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFR 576

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +FEEMK+ ++  N  TY CL++AC    +LD     +  M +    ++   Y  +I    
Sbjct: 577 MFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFC 636

Query: 193 NKIPRADDTATKIIELVEQSK 213
            K+ + ++ A K   L++Q++
Sbjct: 637 -KLNQTEE-AMKYFSLMKQNQ 655



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 46/212 (21%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++     ++R      ++++M   G++P R  F+SL+   +K +++   + + ++M+
Sbjct: 412 YNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMR 471

Query: 104 ---------------ANG--------------------------FLPDVAVYNYLISVCG 122
                           NG                          F PD  +YN LI  C 
Sbjct: 472 KQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACV 531

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K     + +++F+EMK   ++P+  TY  L+ A      L+  + +  +M      ++  
Sbjct: 532 KFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDV 591

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            Y  L+ A        +D   + ++ +EQ K 
Sbjct: 592 TYGCLVDACV-----RNDRLDQALQFIEQMKS 618


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 2/167 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+             ++  +M   G  P    F++LI G  K   + +       + 
Sbjct: 436 YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLM 495

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +GF+PD+  +  LI         D A   FEEM ++ V+PN QTY  L++   +AG ++
Sbjct: 496 EHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVN 555

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIEL 208
               ++  M   G   D + +  LI +     K+ +A+D    ++  
Sbjct: 556 KAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRF 602



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 143/327 (43%), Gaps = 33/327 (10%)

Query: 12  KSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR---DVYDDMM 68
           +++ GAL RR  V  +G      R      SE   V   + S  R  L R   +V+  M 
Sbjct: 122 RALVGALWRRGPVVLSGRLVAEVRGCGCEVSE-ELVCALVESWGRLGLARYAHEVFVQMP 180

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
             G++P+  ++++LI  +++   +   +    QM A+G  PD   YN L+   G C+   
Sbjct: 181 RLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVH--GVCRRGI 238

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A+R+  +M+   ++PN  TY  L++    AG+++  + ++  M   G    +  Y  
Sbjct: 239 VDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRT 298

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM--GVSKEELYNLPTAE 244
           L+      + R  D A +++        W   ETS + +    M   +SK+++      E
Sbjct: 299 LVHGVFRCLER--DKAYRML------SDWLGHETSLHPSACHTMLYCLSKKDMAK-EAVE 349

Query: 245 YVHR---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNI 299
           +  R   RG  L    T + +      +  +V  +  LL+   K+  +P  DVYI++  I
Sbjct: 350 FEKRMSARGYLLDS--TAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMV--I 405

Query: 300 RCYLHSGDIDN-----GHKVFEDYICS 321
           +  L+  +        GH V +  + S
Sbjct: 406 KSLLNCKNFSKANHYLGHMVLKGLLSS 432



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 2/183 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + +  N   +NT+++  +        + V   +M  G  P    F SLI G    
Sbjct: 457 KEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNT 516

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L D F   ++M   G  P+   YN L+       + ++AI +  +MK   V P+  ++
Sbjct: 517 HQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSF 576

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+ +     ++D    I  DM   G   D + Y  LI A  ++  R  + A +I+   
Sbjct: 577 NALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDE--RRVNKAKEILFAR 634

Query: 210 EQS 212
           E+S
Sbjct: 635 ERS 637



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 125/374 (33%), Gaps = 59/374 (15%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R Y  +++ +  V++          L ++ D  + +G  P  D++  +I   +       
Sbjct: 357 RGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSK 416

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              +   M   G L  V  YN +I    K    D+A  I +EM+     PN  T+  L++
Sbjct: 417 ANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLIS 476

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
             +  G +     +++ +   G   D   +  LI    N   + DD      E+ E    
Sbjct: 477 GYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCN-THQLDDAFVCFEEMAE---- 531

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           W               GV        P A+               Y+V  H       V 
Sbjct: 532 W---------------GVR-------PNAQ--------------TYNVLMHTLCSAGHVN 555

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               LL  +K D  +PD Y     I  +     +D    +F D +     P +  Y +L+
Sbjct: 556 KAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLI 615

Query: 335 EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG-------SDLLLVAAGEKSGGYTTAN 387
           +            L  +  VN     +F   R G       S   +VAA  K G ++ A 
Sbjct: 616 KA-----------LCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAG 664

Query: 388 YIWDLMQARKITPS 401
            + D   +R    S
Sbjct: 665 ELMDKYLSRNAQSS 678



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 107/272 (39%), Gaps = 16/272 (5%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G++P    +  L+ G     R+++ F   D+MK  G  P  A Y  L+    +C   D+
Sbjct: 252 EGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDK 311

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A R+  +   +E   +      +L   +            + M+A G  LD   + G++ 
Sbjct: 312 AYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAF-GIVM 370

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
           +   K     D    + EL++     S ++  GN   +  + V K  L     ++  H  
Sbjct: 371 SCALKCLEVSD----LCELLD-----SFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYL 421

Query: 250 G-----GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
           G     G LS +++ Y++      +   V   E +++ ++     P++      I  Y  
Sbjct: 422 GHMVLKGLLSSVMS-YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSK 480

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            G++ N   V +  +     P    + +L++G
Sbjct: 481 LGNVHNAKVVLKMLMEHGFMPDIITFTSLIDG 512


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           TS   +  +++ +A +A  YN VV  L    +     +V ++M +  V PT   + S++ 
Sbjct: 579 TSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVD 638

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G  K  RL + +   ++ K+ G   +V +Y+ LI   GK    D+A  I EEM K  + P
Sbjct: 639 GLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 698

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           N  T+  L++A     ++D      + M       + + Y+ LI
Sbjct: 699 NVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILI 742



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 127/304 (41%), Gaps = 29/304 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y ++V  L    R     +++  M  +   P    ++++I+G     R  D +   ++++
Sbjct: 284 YTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLR 343

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P V  +N +++  GK +  D+A+ +F+ MKK + KPN  TY  +++    AG+++
Sbjct: 344 ERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK-DAKPNISTYNIIIDMLCMAGRVN 402

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y I  +M  AG       +  L++ +        D   K  +L E  + + S    G 
Sbjct: 403 EAYKIRDEMELAG------LFPNLLSVNI-----MVDRLCKANQLEEAHRIFESASERGC 451

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA-----------FHACAELKD 272
           N  +       + L      +  +R      ++L   H A           F      +D
Sbjct: 452 NPNSVTYCSLIDGLGKKGKIDDAYR---LFEKMLDAGHDANPIIYTSLIRNFFMHGRKED 508

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
              +    EM+++  + PD+ ++   + C   +G+++ G  +FED       P    Y+ 
Sbjct: 509 GHKIYK--EMIRRGGR-PDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSI 565

Query: 333 LVEG 336
           L+ G
Sbjct: 566 LIHG 569



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    R    +   +N+++T L  +R+      ++D M  D  +P    ++ +I      
Sbjct: 340 ERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDMLCMA 398

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + +  RD+M+  G  P++   N ++    K    ++A RIFE   +    PN  TY
Sbjct: 399 GRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTY 458

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++     G++D  Y +   M  AG   +   Y  LI
Sbjct: 459 CSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLI 497



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 110/276 (39%), Gaps = 6/276 (2%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R +++DM   G  P    +  LI G  K  + ++T      M   GF  D   YN ++  
Sbjct: 545 RAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDG 604

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+A  + EEMK   V P   TY  +++  A   +LD  Y +  +  + G  L+
Sbjct: 605 LCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELN 664

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
              Y+ LI     K+ R D+    + E+++  KG +    + N+    M  + K E  + 
Sbjct: 665 VILYSSLIDGF-GKVGRIDEAYLILEEMMK--KGLTPNVYTWNSL---MDALVKTEEIDE 718

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
               +   +    S     Y +  +    ++         + ++K    P+V      I 
Sbjct: 719 ALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMIS 778

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                G+I + + +FE +  +   P +  +  L+EG
Sbjct: 779 GLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEG 814



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   ++     + Y ++V  L    R      ++++    G++    L+ SLI G  K 
Sbjct: 619 EEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKV 678

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + +   ++M   G  P+V  +N L+    K +  D+A+  F+ MK+ +  PN  TY
Sbjct: 679 GRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTY 738

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             L+N      + +  +   ++M   G   +   Y  +I+
Sbjct: 739 SILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMIS 778



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 42  SEYNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           S Y  ++ +L      +R   LLR + D     G + +  LF +L+    +  +++    
Sbjct: 177 SAYTVLIGALAEARQPERALELLRQMQDV----GYEVSVPLFTTLVRALAREGQMEPALA 232

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             D++K +   PD+ +YN  I   GK  + D A + F E+K + ++P+  +Y  ++    
Sbjct: 233 LVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLC 292

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            AG+L     +   M A       + Y  +I  + +   R DD A K++E + +     S
Sbjct: 293 KAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSA-ERFDD-AYKLLERLRERGCIPS 350

Query: 218 V 218
           V
Sbjct: 351 V 351



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 127/313 (40%), Gaps = 18/313 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E  + R    N+  Y +++  L  + +      +++ M+  G      ++ SLI      
Sbjct: 444 ESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMH 503

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R +D      +M   G  PD+ + N  +    K    ++   IFE+MK +   P+ ++Y
Sbjct: 504 GRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSY 563

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
             L++    AGQ      I + M+  G  LD   Y  ++     + K+    D A +++E
Sbjct: 564 SILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKV----DKAYEVLE 619

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSK----EELYNLPTAEYVHRRGGFLSRLLTVYHVA 263
            ++      +V T G+  +    G++K    +E Y L   E    +G  L+ +L  Y   
Sbjct: 620 EMKVKHVHPTVATYGSIVD----GLAKIDRLDEAYML--FEEAKSKGIELNVIL--YSSL 671

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
                ++  +     +LE + K   +P+VY     +   + + +ID     F+     + 
Sbjct: 672 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKC 731

Query: 324 FPPAELYATLVEG 336
            P    Y+ L+ G
Sbjct: 732 SPNTYTYSILING 744



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           GR  F      E+     +  +   Y+ ++  LT   +     +++  M   G       
Sbjct: 544 GRAIF------EDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARA 597

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +++++ G  K  ++   +   ++MK     P VA Y  ++    K    D+A  +FEE K
Sbjct: 598 YNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAK 657

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              ++ N   Y  L++     G++D  Y I+ +M   G   + + +  L+ A
Sbjct: 658 SKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDA 709



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 68/164 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +    N   Y++++       R      + ++MM  G+ P    ++SL+   +K 
Sbjct: 654 EEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKT 713

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + +       MK     P+   Y+ LI+   + +  ++A   ++EM+K  + PN  TY
Sbjct: 714 EEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTY 773

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +++  A  G +   Y++       G   D   +  LI   +N
Sbjct: 774 TTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSN 817



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 54/116 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L   +++      + +M   G+ P    + ++I G  K   + D +   
Sbjct: 734 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLF 793

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           ++ K NG +PD A +N LI          +A ++FEE +    + N +T + LL+A
Sbjct: 794 ERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDA 849



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    N   +N+++ +L            +  M      P    +  LI G  + 
Sbjct: 689 EEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRV 748

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +    F F  +M+  G +P+V  Y  +IS   K  N   A  +FE  K     P+  ++
Sbjct: 749 QKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASF 808

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGL 187
             L+   + A +    Y +  +    G  L+ K C + L
Sbjct: 809 NALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLL 847



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 126/315 (40%), Gaps = 40/315 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L+       L  V ++M   G         +L+   ++  RL+D F     M+
Sbjct: 111 YNAVLPFLSHD--LAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMR 168

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              F P  + Y  LI    + +  ++A+ +  +M+    + +   +  L+ A A  GQ++
Sbjct: 169 HLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQME 228

Query: 164 PVYAIVR---------DMTAAGAGLDKFCYAGLITA-----HTNKIP--RADDTA-TKII 206
           P  A+V          D+      +D F  AG +       H  K    R DD + T ++
Sbjct: 229 PALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMV 288

Query: 207 ELVEQSKGWSSVETSGNNAENE------------MMGVSKEELYN--LPTAEYVHRRGGF 252
            ++ ++      E      E E            +MG    E ++      E +  RG  
Sbjct: 289 WVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCI 348

Query: 253 LSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDN 310
            S  +  ++       + + V    TL +++KKD K P++  Y ++ ++ C   +G ++ 
Sbjct: 349 PS--VVSFNSILTCLGKKRKVDEALTLFDVMKKDAK-PNISTYNIIIDMLCM--AGRVNE 403

Query: 311 GHKVFEDYICSEKFP 325
            +K+ ++   +  FP
Sbjct: 404 AYKIRDEMELAGLFP 418



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 59/147 (40%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +++   N S YN ++  L    R      + D+M L G+ P     + ++    K ++L+
Sbjct: 378 KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLE 437

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     +     G  P+   Y  LI   GK    D A R+FE+M       N   Y  L+
Sbjct: 438 EAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLI 497

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLD 180
                 G+ +  + I ++M   G   D
Sbjct: 498 RNFFMHGRKEDGHKIYKEMIRRGGRPD 524


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 20/271 (7%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ PT  ++++LI G  +   L+  F   +QMK+    PD   YN LI+   K +   +A
Sbjct: 186 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 245

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +  EM+K  V P+ +T+  L++A   AGQL+  + ++ DM   G   D   +  ++ A
Sbjct: 246 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 305

Query: 191 --HTNKIPRA----DDTATKIIELVEQSKGWSS-VETSGNNAENEMMGVSKEELYNLPTA 243
                KIP A    DD   K  ++   ++ ++S ++    + + E   +  E++ N    
Sbjct: 306 FCKNGKIPEAVAILDDMIYK--DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKN---- 359

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
                  G  + ++T Y++          +   E L+  L+     PDV      I    
Sbjct: 360 ------SGVSASIVT-YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 412

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           + GD D   ++ ++       P    Y TLV
Sbjct: 413 NKGDTDKALELLQEMNKYGIRPTLRTYHTLV 443



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 35  RNYANNASEYNTVV----TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           ++ A NA  YN+++     S  +++ F L+    + M   GV  +   ++ L+ G  + S
Sbjct: 325 KDVAPNAQVYNSIIDAYIESGDTEQAFLLV----EKMKNSGVSASIVTYNLLLKGLCRSS 380

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++ +       ++  G  PDV  YN +IS C    ++D+A+ + +EM KY ++P  +TY 
Sbjct: 381 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYH 440

Query: 151 CLLNACAAAGQLDPVYAIVRDM 172
            L++A A+AG++  +  + + M
Sbjct: 441 TLVSALASAGRVHDMECLYQQM 462



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN V+  L    +      V+D+M+  GV P    ++++I G +KG  L+  F  R
Sbjct: 15  DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P++  YN L+S   +    D+   + +EM  + + P+G TY  L +     
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 134

Query: 160 GQ 161
           G+
Sbjct: 135 GE 136



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 66/159 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R+   +   YN ++  L          D+  +M   GV P+ + F++LI      
Sbjct: 215 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 274

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+  F     M+  G   DV  +  ++    K     +A+ I ++M   +V PN Q Y
Sbjct: 275 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 334

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +++A   +G  +  + +V  M  +G       Y  L+
Sbjct: 335 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL 373



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++ +  +  +      V  DM   G++     F S++    K  ++ +     D M 
Sbjct: 264 FNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI 323

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P+  VYN +I    +  +++QA  + E+MK   V  +  TY  LL     + Q+D
Sbjct: 324 YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID 383

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               ++  +   G   D   Y  +I+A  NK
Sbjct: 384 EAEELIYTLRNQGLRPDVVSYNTIISACCNK 414



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           F LRD    M+ DG +P    ++ L+ G  +  R+ +T    D+M ++   PD   Y+ L
Sbjct: 71  FRLRD---QMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSIL 127

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
                +   S   + +F E  K  V     T   LLN     G++     ++  +   G 
Sbjct: 128 FDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 187

Query: 178 GLDKFCYAGLITAH 191
                 Y  LI  +
Sbjct: 188 VPTTVIYNTLINGY 201


>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 475

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NY      YN ++ SL   +++ L+  VY+ M+ DG  P    ++ L+    +  ++   
Sbjct: 216 NYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGKMDRF 275

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M  +G  PD   YN L+ + GK      A+     MK+  +  +   Y  L++ 
Sbjct: 276 DRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDG 335

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            + AG L+     + +M  AG   D  CY  +IT + 
Sbjct: 336 LSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYV 372



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 10/269 (3%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           D  + T + +H L+    +    +  +   D+M  +GF      +N LI  CG+   + Q
Sbjct: 145 DCFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQ 204

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+  F + K +  +P   +Y  +LN+     Q   +  +   M   G   D   Y  L+ 
Sbjct: 205 AVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLW 264

Query: 190 AH--TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247
            +    K+ R D    ++ +  E ++   S +    N    ++G   + L  L T  ++ 
Sbjct: 265 TNYRLGKMDRFD----RLFD--EMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMK 318

Query: 248 RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
             G  LS L   Y       +   +++A +  L+ + K    PDV      I  Y+ SG+
Sbjct: 319 EVGIDLSVLH--YTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGE 376

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEG 336
           ++   ++F++     + P    Y +++ G
Sbjct: 377 LEKAKEMFKEMTVEGQLPNVFTYNSMIRG 405



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L+        +   D+M+  G +P    +  +I G +    L+       +M 
Sbjct: 329 YTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMT 388

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G LP+V  YN +I   G C   +  +A  + +EM+     PN   Y  L++    AG+
Sbjct: 389 VEGQLPNVFTYNSMIR--GLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGK 446

Query: 162 LDPVYAIVRDMTAAG 176
           L     ++RDM   G
Sbjct: 447 LSEARKVIRDMVKKG 461



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 68/160 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E AR   + +   YN ++  L    +        + M   G+  +   + +LI G  + 
Sbjct: 280 DEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGLSRA 339

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+   +F D+M   G  PDV  Y  +I+        ++A  +F+EM      PN  TY
Sbjct: 340 GNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEGQLPNVFTY 399

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             ++     AG+      ++++M + G   +   Y+ L++
Sbjct: 400 NSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVS 439



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 54/126 (42%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D+M  DG+ P    ++ L+    KG++        + MK  G    V  Y  LI    
Sbjct: 278 LFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGLS 337

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +  N +      +EM K   +P+   Y  ++     +G+L+    + ++MT  G   + F
Sbjct: 338 RAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEGQLPNVF 397

Query: 183 CYAGLI 188
            Y  +I
Sbjct: 398 TYNSMI 403


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 3/178 (1%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
            N   +N V++ L          D+Y D+M D    PT   +  LI G  K  RL +    
Sbjct: 856  NTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQL 915

Query: 99   RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
             + M   G  P+ A+YN LI+  GK   +D A  +F+ M K  V+P+ +TY  L++    
Sbjct: 916  FEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCM 975

Query: 159  AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             G++D      R++  +G   D  CY  LI     K  R ++      E+ ++S+G +
Sbjct: 976  VGRVDEGLHYFRELKESGLNPDVVCY-NLIINGLGKFHRLEEALVLFNEM-KKSRGIT 1031



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 11/184 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN ++  L   R      +VY  M+LDG +P+   + SL+VG  K   ++      
Sbjct: 189 NAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLL 248

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  P+V  +   I V G+    ++A  I + M      P+  TY  L++A   A
Sbjct: 249 KEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTA 308

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +LD    +   M       D+  Y  L+   ++   R  D+  +          WS +E
Sbjct: 309 RKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDN--RDLDSVNQF---------WSEME 357

Query: 220 TSGN 223
             G+
Sbjct: 358 KDGH 361



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRL---QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
           GVQP    ++ LI G ++   +   QD F    Q+K  G +PDVA YN+L+   GK    
Sbjct: 782 GVQPKLPTYNLLIGGLLEADMIEIAQDVFL---QVKNTGCIPDVATYNFLLDAYGKSGKI 838

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           D+   I++EM  +E +PN  T+  +++    AG +D    +  D+ +
Sbjct: 839 DELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMS 885



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 1/150 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FF 98
           + + YN ++ +     +   L ++Y +M     +P     + +I G +K   + D    +
Sbjct: 821 DVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLY 880

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D M    F P    Y  LI    K     +A ++FE M  Y  +PN   Y  L+N    
Sbjct: 881 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGK 940

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           AG+ D   A+ + M   G   D   Y+ L+
Sbjct: 941 AGEADAACALFKRMVKEGVRPDLKTYSVLV 970



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++   +  R    +   + +M  DG  P    F  L+    K     + F   D M+
Sbjct: 333 YITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMR 392

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LP++  YN LI    +    D A+ IF+ M+   VKP   TY+  ++    +G  D
Sbjct: 393 DQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSG--D 450

Query: 164 PVYAI 168
            V A+
Sbjct: 451 SVSAL 455



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 71   GVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
            G+ P    ++ +I G  K  RL++    F +  K+ G  PD+  YN LI   G     ++
Sbjct: 993  GLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEE 1052

Query: 130  AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            A +I+ E+++  ++PN  T+  L+   + +G+ +  YA+ + M   G
Sbjct: 1053 AGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1099



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 1/155 (0%)

Query: 35   RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
            R+++  A  Y  ++  L+   R +  + +++ M   G +P   +++ LI G  K      
Sbjct: 887  RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADA 946

Query: 95   TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  +M   G  PD+  Y+ L+         D+ +  F E+K+  + P+   Y  ++N
Sbjct: 947  ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIIN 1006

Query: 155  ACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYAGLI 188
                  +L+    +  +M  + G   D + Y  LI
Sbjct: 1007 GLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLI 1041



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 113/301 (37%), Gaps = 22/301 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ +L + R+    ++V+  M     +P R  + +L+        L     F  +M+
Sbjct: 298 YTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEME 357

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G +PDV  +  L+    K  N  +A    + M+   + PN  TY  L+       +LD
Sbjct: 358 KDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLD 417

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH------TNKIPRADDTATKII--ELVEQSKGW 215
               I  +M + G     + Y   I  +       + +   +   TK I   +V  +   
Sbjct: 418 DALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 477

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
            S+  +G + E      +K+  Y L     V             Y++     +++ ++  
Sbjct: 478 YSLAKAGRDRE------AKQIFYGLKDIGLVPDS--------VTYNMMMKCYSKVGEIDE 523

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              LL  + ++   PDV +V   I     +  +D   K+F      +  P    Y TL+ 
Sbjct: 524 AIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLA 583

Query: 336 G 336
           G
Sbjct: 584 G 584



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 6/183 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++  L    R     +++D+M   GV+PT   +   I    K           
Sbjct: 399 NLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 458

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  G  P++   N  +    K     +A +IF  +K   + P+  TY  ++   +  
Sbjct: 459 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKV 518

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKIIELVEQSKGWSS 217
           G++D    ++ +M       D      LI    N + +AD  D A K+   +++ K   +
Sbjct: 519 GEIDEAIKLLSEMVENCCEPDVIVVNSLI----NTLYKADRVDEAWKMFMRMKEMKLKPT 574

Query: 218 VET 220
           V T
Sbjct: 575 VVT 577



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 14/155 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRR-------FFLLRDVYDDMMLDGVQPTRDLFHSL 82
           E+   +  A N    N  + SL    R       F+ L+D+       G+ P    ++ +
Sbjct: 459 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI-------GLVPDSVTYNMM 511

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           +    K   + +      +M  N   PDV V N LI+   K    D+A ++F  MK+ ++
Sbjct: 512 MKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL 571

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           KP   TY  LL      G++     +   M   G 
Sbjct: 572 KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGC 606



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L    +     ++++ M+  G  P    F++L     K   +        +M 
Sbjct: 578 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 637

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PDV  YN +I    K     +A+  F +MKK  V P+  T   LL     AG ++
Sbjct: 638 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKAGLIE 696

Query: 164 PVYAIV 169
             Y I+
Sbjct: 697 DAYKII 702



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M+ +  +P   + +SLI    K  R+ + +    +MK     P V  YN L++  GK  
Sbjct: 530 EMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG 589

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +AI +FE M +    PN  T+  L +      ++     ++  M   G   D F Y 
Sbjct: 590 KIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYN 649

Query: 186 GLI 188
            +I
Sbjct: 650 TII 652


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 330 FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 389

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F   +   +  N   Y  L++    AG+
Sbjct: 390 DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGR 447

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T    R  D A  + + +E+ +G
Sbjct: 448 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH--RKVDEAIALFKRMEEEEG 498



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ Y +N   Y ++V  L   +    +R V  ++       T    ++LI    K   ++
Sbjct: 145 QKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVE 204

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +  +   +MK NG  P +  YN+L++        D A R+FE M+   +KP+  TY  ++
Sbjct: 205 ELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMI 264

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                AGQ       +RDM   G   DK  Y  +I A
Sbjct: 265 KGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQA 301



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 3/158 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     DG+      + SLI G  K  R+ +     ++M 
Sbjct: 400 YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS 459

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
             G   D   YN LI    K +  D+AI +F+ M++ E       TY  LL+      + 
Sbjct: 460 EKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRN 519

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
           +    +   M   G      C+  L T    + K+ RA
Sbjct: 520 EEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARA 557



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 4/154 (2%)

Query: 23  FVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL 82
           FV+S    E  +  +    S  N ++ S         L  V+  M  +G++PT   ++ L
Sbjct: 173 FVSS----EIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFL 228

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           + G +    +       + M++    PD+  YN +I    K   + +A+    +M+    
Sbjct: 229 MNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGH 288

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + +  TY+ ++ AC A        A+ ++M   G
Sbjct: 289 EADKITYMTMIQACYADSDFGSCVALYQEMDEKG 322


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 5/169 (2%)

Query: 27  AGAEEYARR-----NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
           AG  E ARR      +  +   +N ++ +L  + R      V+DDM+  G  P+   +  
Sbjct: 232 AGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSI 291

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           L+  T K S  +      D+M+A G  PD+  YN LI+      + D+A+ I   +  + 
Sbjct: 292 LLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHG 351

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            KP+  TY  +L +   + +   V  ++ +MT+     D+  +  ++T+
Sbjct: 352 CKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTS 400



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+++LT   +     D+   M+ +G+ P    + SL  G  +            +++
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQ 731

Query: 104 ANGFLPDVAVYN-YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             G  PD   YN  L+  C   + +D AI  F  M      P+  TYV LL A A  G L
Sbjct: 732 DTGLSPDTTFYNDVLLGFCRD-RRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLL 790

Query: 163 DPVYAIVRDMTAAGAGLDK 181
           D    ++  + + G  LDK
Sbjct: 791 DEAKRLLASLCSLGV-LDK 808



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 65/164 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E    N A +   +NT+VTSL  Q       +V D M   G       + S++ G     
Sbjct: 381 EMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVG 440

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+ D      ++K+ G  PD   Y  ++      +  ++A  +  EM   +  P+  T+ 
Sbjct: 441 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFN 500

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            ++ +    G +D    +V  M+  G   D   Y  +I    N+
Sbjct: 501 TVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNE 544



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/173 (16%), Positives = 71/173 (41%), Gaps = 2/173 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  V+ SL    R+  + ++  +M  +   P    F++++    +   +       
Sbjct: 355 DAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVV 414

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M  +G + D+  Y+ ++         D A+ +   +K Y  KP+   Y  +L    + 
Sbjct: 415 DHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCST 474

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            Q +    ++ +M  +    D+  +  ++ +   K     D A +++E + ++
Sbjct: 475 EQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQK--GLVDRAIRVVEQMSEN 525



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 52/295 (17%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEM 137
           +++++ G  +  R++D    R  +    F PD   +N LI ++C + +  D A+ +F++M
Sbjct: 222 YNTMVNGYCRAGRIEDA---RRLINGMPFPPDTFTFNPLIRALCVRGRIPD-ALAVFDDM 277

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--- 194
                 P+  TY  LL+A           A++ +M A G   D   Y  LI A  N+   
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV 337

Query: 195 ---------IP----RADD-TATKIIELVEQSKGWSSVE------TSGNNAENEMMGVSK 234
                    +P    + D  T T +++ +  S+ W  VE      TS N A +E+     
Sbjct: 338 DEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT---- 393

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVY-HVAFHACAE-----------LKDVQAMETLLEM 282
              +N        +  G + R + V  H++ H C             L DV  ++  +E+
Sbjct: 394 ---FNTIVTSLCQQ--GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 283 LKKDRK---SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           L + +     PD       ++    +   +   ++  + +CS+  P    + T+V
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVV 503



 Score = 41.6 bits (96), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 2/145 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ +    + +   YN ++  L ++       ++  D+   G +P    F++L+ G    
Sbjct: 520 EQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGV 579

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            R +D       M  +   PD   +N +I S+C K   + QAI   + M +    PN  T
Sbjct: 580 DRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLT-QAIETLKIMAENGCVPNSST 638

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMT 173
           Y  +++A   AG+      ++  MT
Sbjct: 639 YSIVVDALLKAGKAQAALELLSGMT 663


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 156/376 (41%), Gaps = 28/376 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++ A    A N   Y  ++  L   RR          M+  G +P    ++SLI G    
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA 128

Query: 90  SRLQDT-FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           +R+ D     ++ M  +G +PDV  YN  IS   K    D+ + + EEM +  + P+  T
Sbjct: 129 NRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVT 188

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKII 206
           +  +++    A ++D  + + + M   G   D   Y+ ++    + + RA+  DT  +++
Sbjct: 189 FCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIML----DNLSRANRLDTVEEVL 244

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY-HVAFH 265
           E + +S  ++   T        +         ++ +A + + +      ++ VY H AF 
Sbjct: 245 EHMVKSGHYALSATYAPLIHALI------RAGDIESASWAYEQAMEAGCVMEVYTHNAFI 298

Query: 266 A--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV---FEDYIC 320
              C   K   A   LL M++     P++      I     SG++D+  K+     D  C
Sbjct: 299 GALCRSGKFPLAKNILLGMIESG-SLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGC 357

Query: 321 SEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEK 379
            +  P    + TL+     G+   G +  AQ  L  M ++NI + P + +   ++    K
Sbjct: 358 CK--PDVIFFNTLIS----GFCKAGRLSQAQQLLKEMKAKNICV-PDVVTYNTMIDGQSK 410

Query: 380 SGGYTTANYIWDLMQA 395
            G    A  + + MQA
Sbjct: 411 FGSLKQAKLLLEEMQA 426



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 2/169 (1%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A   Y  +   Y T++  L         + +   M   G  P    + +LI G  K  R 
Sbjct: 37  AANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRP 96

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
            D      +M  +G  PD+  YN LI  +C   +  D  + + E M +    P+  TY  
Sbjct: 97  HDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNT 156

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            ++    AG+LD    ++ +M   G   D   +  +I+    K  R DD
Sbjct: 157 FISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLC-KANRIDD 204



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 1/135 (0%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           ++++LI G  K  + +        M ANG+   V  Y  LI    K  + D A  + ++M
Sbjct: 12  IYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKM 71

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
                 PN  TY  L++    A +       V+ M  +G   D   Y  LI        R
Sbjct: 72  ADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA-NR 130

Query: 198 ADDTATKIIELVEQS 212
            DD    + EL+ +S
Sbjct: 131 MDDAGLVLQELMIES 145



 Score = 38.1 bits (87), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 9/236 (3%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M +  F  D A+YN LI+   K +    A+ +   M       +  TY  L++    +G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           LD   A+++ M  AG   +   Y  LI     K  R  D    +  ++    G      +
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLC-KARRPHDAIQTVKRMLRS--GCEPDLVT 117

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N+  + +   ++ +   L   E +    G +  ++T        C   K  + +E L E
Sbjct: 118 YNSLIHGLCMANRMDDAGLVLQELM-IESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEE 176

Query: 282 MLKKDRK--SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
           M   DR   SPDV      I     +  ID+  +VF+  +     P +  Y+ +++
Sbjct: 177 M---DRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLD 229


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 6/178 (3%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A AE    +    +   YN++V  L         RD+ D M  DGV+P    +   IV  
Sbjct: 195 AVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEY 254

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKP 144
            + + + D F   ++M   G LPDV   + L+   G CK+    +A  +F EM+K    P
Sbjct: 255 CRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVG--GLCKDGRFSEAYALFREMEKIGAAP 312

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADD 200
           N  TY  L++  A A + +   +++ ++ + G  +D   Y  L+       KI  A D
Sbjct: 313 NHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKD 370



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N + +NT++  L S  R      V ++M   G++P+   +  L+ G  K S   +     
Sbjct: 768 NVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLY 827

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   GFLP V+ YN LIS   K     QA  +F EM+   V P   TY  L++  +  
Sbjct: 828 CEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKL 887

Query: 160 GQLDPVYAIVRDMTAAG 176
                V   ++DM   G
Sbjct: 888 RNGTEVRKFLKDMKEKG 904



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 2/174 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N+  N   Y  ++ +L           V  +M    + P    F S+I G +K   +   
Sbjct: 379 NHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKA 438

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
             +  +MK  G  P+V  Y  +I    KC   + A+ ++ EM    V+ N      L+N 
Sbjct: 439 TDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNG 498

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
               G+++   A+ R+M   G  LD   Y  LI     T  +P A     ++ E
Sbjct: 499 LKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTE 552



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE + R  A +   +N ++               YD M+  G+ P    F++L+ G    
Sbjct: 723 EEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESA 782

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ ++    ++MK  G  P    Y+ L++  GK  N  +A+R++ EM      P   TY
Sbjct: 783 GRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTY 842

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++  +  G +     +  +M   G  L   C   ++ +  +K+    +    + ++ 
Sbjct: 843 NALISDFSKVGMMSQAKELFNEMQNRGV-LPTSCTYDILVSGWSKLRNGTEVRKFLKDMK 901

Query: 210 EQSKGWS 216
           E  KG+S
Sbjct: 902 E--KGFS 906



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V  L           V ++M   G+ P    F++LI+G  K   L + F   DQM 
Sbjct: 702 YNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQML 761

Query: 104 ANGFLPDVAVYNYLIS---VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            +G  P+VA +N L+      G+   SD    +  EMKK  ++P+  TY  L+  
Sbjct: 762 YHGISPNVATFNTLLGGLESAGRIGESDM---VLNEMKKRGIEPSNLTYDILVTG 813



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DVY +M+ +GV+  + +  SL+ G  K  +++       +M   G L D   Y  LI   
Sbjct: 475 DVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGL 534

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K  N   A ++ +E+ +  + P+   Y   +N     G+     + + +M + G   D+
Sbjct: 535 FKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQ 594

Query: 182 FCYAGLITAHTNK 194
             Y  +I A + +
Sbjct: 595 VTYNTMIAAQSRE 607



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/162 (18%), Positives = 65/162 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        +   YNT++ + + + +      + + M    ++P    + +LIVG  + 
Sbjct: 583 EEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEA 642

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++   +  ++M ++GF P    +  ++  C + + SD  + I E M    +  +   Y
Sbjct: 643 GAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVY 702

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             L+      G       ++ +M+  G   D   +  LI  H
Sbjct: 703 NTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGH 744



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 44/79 (55%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           F ++M++ G  PD   YN +I+   +   + +A+++   MK+  +KPN  TY  L+    
Sbjct: 581 FLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLF 640

Query: 158 AAGQLDPVYAIVRDMTAAG 176
            AG ++    ++ +M+++G
Sbjct: 641 EAGAVEKAKYLLNEMSSSG 659



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 97/261 (37%), Gaps = 12/261 (4%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +LI G  K   L   F    ++     LPD  VYN  I+       S +A    EEM+
Sbjct: 527 YTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQ 586

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIP 196
              +KP+  TY  ++ A +  G+      ++  M  +    +   Y+ LI        + 
Sbjct: 587 STGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVE 646

Query: 197 RADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
           +A     ++      S G+S    +            + +L  L   E++   G  L   
Sbjct: 647 KAKYLLNEM-----SSSGFSPTSLTHRRVLQACSQGRRSDLI-LEIHEWMMNAG--LCAD 698

Query: 257 LTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
           +TVY+      C      +AM  L EM  +   +PD       I  +  SG +DN    +
Sbjct: 699 ITVYNTLVRVLCYNGMTRKAMVVLEEMSGRG-IAPDTITFNALILGHFKSGHLDNAFSTY 757

Query: 316 EDYICSEKFPPAELYATLVEG 336
           +  +     P    + TL+ G
Sbjct: 758 DQMLYHGISPNVATFNTLLGG 778



 Score = 45.4 bits (106), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 2/160 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMK 88
           E  +R    +A   NTV+  L    R      + + M+  G     D+  ++SL+ G  K
Sbjct: 127 EMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCK 186

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              ++  F   ++MKA G   DV  YN L++   +    D A  + + MK+  V+PN  T
Sbjct: 187 VGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVT 246

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           Y   +        +D  +++  +M   G   D    + L+
Sbjct: 247 YTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALV 286



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 58/143 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R+    +    + +V  L    RF     ++ +M   G  P    +  LI    K 
Sbjct: 268 EEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKA 327

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  ++     ++ + G + D+ +Y  L+    K    D+A  +F         PNG TY
Sbjct: 328 QRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTY 387

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
             L++A   AG +D    ++ +M
Sbjct: 388 TVLIDALCKAGNVDGAEQVLSEM 410



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 56/143 (39%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R +   N   Y+T++  L         + + ++M   G  PT      ++    +G R  
Sbjct: 622 RSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSD 681

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 + M   G   D+ VYN L+ V      + +A+ + EEM    + P+  T+  L+
Sbjct: 682 LILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALI 741

Query: 154 NACAAAGQLDPVYAIVRDMTAAG 176
                +G LD  ++    M   G
Sbjct: 742 LGHFKSGHLDNAFSTYDQMLYHG 764



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 53/130 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +R    +   Y+ +VT    Q        +Y +M+  G  P    +++LI    K  
Sbjct: 794 EMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVG 853

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +       ++M+  G LP    Y+ L+S   K +N  +  +  ++MK+    P+  T  
Sbjct: 854 MMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLS 913

Query: 151 CLLNACAAAG 160
            +  A +  G
Sbjct: 914 SISRAFSKPG 923


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           R     A   E  +R++A +   YNT++ +L    R       +  M  +G  PT   F+
Sbjct: 97  RLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFN 156

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMK 138
           ++I G  +  RL D     ++M    F P++  Y+ +I   G CK+   D+A ++ + M 
Sbjct: 157 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVID--GLCKSDQLDEAQQLLDRMV 214

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
               +P+   Y  L+   +AAG+LD    ++R M + G   D   Y  +I     K+ R 
Sbjct: 215 SEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVID-KLCKVGRV 273

Query: 199 DDTATKIIELV 209
           DD      ELV
Sbjct: 274 DDAHEIFRELV 284



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R++  N   Y+ V+  L    +    + + D M+ +G +P    +  L++G     
Sbjct: 177 EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 236

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL        +M + G +PDV  Y  +I    K    D A  IF E+   +  PN  TY 
Sbjct: 237 RLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYS 296

Query: 151 CLLNACAAAGQLDPVYAIVRDMTA 174
            L+     A ++D    ++R+M  
Sbjct: 297 ALIGGYCRASRVDEGGKVMREMAC 320



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN +V  L  Q R    R V  +       P    +++L+    +  R+ +     
Sbjct: 81  NAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF 140

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM   G++P +  +N +I+   + +    A+ +F EM   +  PN  TY  +++    +
Sbjct: 141 TQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKS 200

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            QLD    ++  M + G   D   Y  L+
Sbjct: 201 DQLDEAQQLLDRMVSEGCRPDLVAYTPLV 229



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 1/172 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y      +N ++T L   RR     +V+++M+     P    +  +I G  K  +L +  
Sbjct: 148 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQ 207

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D+M + G  PD+  Y  L+         D A+ +   M      P+  TY  +++  
Sbjct: 208 QLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 267

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
              G++D  + I R++ A     +   Y+ LI  +  +  R D+    + E+
Sbjct: 268 CKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYC-RASRVDEGGKVMREM 318



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 110/274 (40%), Gaps = 25/274 (9%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQ 129
           QP    + +LI G  K  R+   F  FR  + A G  P+   YN L+   G CK    D 
Sbjct: 43  QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVD--GLCKQDRLDA 100

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A  +  E +K +  P+  TY  L+ A    G++D   A    MT  G       +  +IT
Sbjct: 101 ARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIIT 160

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
               +  R  D      E++++    + V  S       + G+ K +   L  A+ +  R
Sbjct: 161 GLC-RARRLADALEVFNEMIDRDFHPNLVTYS-----VVIDGLCKSD--QLDEAQQLLDR 212

Query: 250 ---GGFLSRLL--TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCY 302
               G    L+  T   + F A   L        LL  +      PDV  Y V+ +  C 
Sbjct: 213 MVSEGCRPDLVAYTPLVLGFSAAGRLDSALG---LLRRMVSQGCIPDVVTYTVVIDKLCK 269

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +  G +D+ H++F + + ++  P    Y+ L+ G
Sbjct: 270 V--GRVDDAHEIFRELVANKCSPNVVTYSALIGG 301



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 58/302 (19%), Positives = 110/302 (36%), Gaps = 26/302 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMML-DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           Y T++  L    R     D++  M+   G +P    +++L+ G  K  RL        + 
Sbjct: 49  YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEA 108

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +   F PDV  YN L++   +    D+A+  F +M +    P   ++  ++     A +L
Sbjct: 109 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 168

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                +  +M      +D+  +  L+T          D   K  +L E  +    + + G
Sbjct: 169 ADALEVFNEM------IDRDFHPNLVTYSV-----VIDGLCKSDQLDEAQQLLDRMVSEG 217

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT--------VYHVAFHACAELKDVQ 274
              +   +      +     A  +    G L R+++         Y V      ++  V 
Sbjct: 218 CRPD---LVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVD 274

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               +   L  ++ SP+V      I  Y  +  +D G KV  +  C    P    Y T++
Sbjct: 275 DAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMI 331

Query: 335 EG 336
            G
Sbjct: 332 WG 333


>gi|307110849|gb|EFN59084.1| hypothetical protein CHLNCDRAFT_137845 [Chlorella variabilis]
          Length = 576

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 14/152 (9%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++ L    ++    DV+  M   G+ P              G   +  +   
Sbjct: 201 NVVHYTTLMSCLQKAGQWERSMDVFRQMEAAGIVP-------------DGGDWEAGWAVF 247

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAA 158
             M+  G  P    YN LIS C +C   D+A+ +F  M++  +  PN  T+  L++ACA 
Sbjct: 248 LAMRQAGLTPSTISYNALISACERCGQPDRALEVFASMQRRGQAPPNAVTFNTLISACAK 307

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           AG+      +   M AAG   D F  + LITA
Sbjct: 308 AGRYAKARELHAAMAAAGIPEDVFTLSALITA 339



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 1/115 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +YD+M  DGV P    ++  +     G            M+A G   D    + L+S C 
Sbjct: 118 LYDEMRRDGVLPDVVAYNICLTAAGLGHHWGRVLSLLGDMEAAGVGWDAFTCSALLSACQ 177

Query: 123 KCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            C   +QA+  F + +    ++ N   Y  L++    AGQ +    + R M AAG
Sbjct: 178 ACGQWEQALEWFGQARATPGLQLNVVHYTTLMSCLQKAGQWERSMDVFRQMEAAG 232



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 87  MKGSRLQDT---FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           M   R +DT       D+M+ +G LPDV  YN  ++  G   +  + + +  +M+   V 
Sbjct: 104 MHSRRAKDTGAALALYDEMRRDGVLPDVVAYNICLTAAGLGHHWGRVLSLLGDMEAAGVG 163

Query: 144 PNGQTYVCLLNACAAAGQLD 163
            +  T   LL+AC A GQ +
Sbjct: 164 WDAFTCSALLSACQACGQWE 183



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 11/111 (9%)

Query: 34  RRNYAN-NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-----VGTM 87
           RR  A  NA  +NT++++     R+   R+++  M   G+        +LI     +G  
Sbjct: 287 RRGQAPPNAVTFNTLISACAKAGRYAKARELHAAMAAAGIPEDVFTLSALITACERIGHW 346

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +G+  +D F    + +A G  P+   YN LIS  G+     +A+  F  M+
Sbjct: 347 QGA--EDHFV---EFQARGVAPNTVAYNRLISALGRSGEWQRAVAAFRAMQ 392



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 102 MKANGFLP---DVAVYNYLISV-CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           MKA G LP   D  +   LI +   + K++  A+ +++EM++  V P+   Y   L A  
Sbjct: 84  MKAAG-LPWAGDAVLRTKLIKMHSRRAKDTGAALALYDEMRRDGVLPDVVAYNICLTAAG 142

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                  V +++ DM AAG G D F  + L++A
Sbjct: 143 LGHHWGRVLSLLGDMEAAGVGWDAFTCSALLSA 175


>gi|255551050|ref|XP_002516573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544393|gb|EEF45914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 396

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+ T+        L  ++  +M   GVQP      ++I G  K  R+++   F  +MK
Sbjct: 13  YNTIATAYVRNEETNLAEEMISEMQNTGVQPNERTCGTVISGYCKEGRIKEALRFVHRMK 72

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P++ V+N LI       + +    + + M+++ VKP+  T+  ++NA + AG ++
Sbjct: 73  ELGVHPNLVVFNSLIKGFVDIMDRNGVDEVLKLMEEFNVKPDVITFSTIMNAWSKAGYMN 132

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               I  DM  AG   D   Y+ L
Sbjct: 133 KCREIFDDMMKAGIQPDGHAYSIL 156



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 59/118 (50%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++T++ + +        R+++DDMM  G+QP    +  L  G ++    +        M 
Sbjct: 118 FSTIMNAWSKAGYMNKCREIFDDMMKAGIQPDGHAYSILAKGYVRAQEPEKAEQLLTTMM 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            +GF P+V ++  +IS        D AIR+F++M +Y + PN +T+  L+   + A Q
Sbjct: 178 ESGFHPNVVIFTTVISGWCSTDRMDCAIRVFDKMCEYGISPNLKTFETLIGGFSEAKQ 235



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 20/287 (6%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M  +G  PDV  YN + +   + + ++ A  +  EM+   V+PN +T   +++     G+
Sbjct: 1   MVVSGRQPDVVTYNTIATAYVRNEETNLAEEMISEMQNTGVQPNERTCGTVISGYCKEGR 60

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           +      V  M   G   +   +  LI    + + R  +   ++++L+E+      V T 
Sbjct: 61  IKEALRFVHRMKELGVHPNLVVFNSLIKGFVDIMDR--NGVDEVLKLMEEFNVKPDVITF 118

Query: 222 GN--NAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
               NA ++   ++K  E+++      +   G   S L   Y  A       ++ +  E 
Sbjct: 119 STIMNAWSKAGYMNKCREIFDDMMKAGIQPDGHAYSILAKGYVRA-------QEPEKAEQ 171

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-AELYATLVEGA 337
           LL  + +    P+V I    I  +  +  +D   +VF D +C     P  + + TL+ G 
Sbjct: 172 LLTTMMESGFHPNVVIFTTVISGWCSTDRMDCAIRVF-DKMCEYGISPNLKTFETLIGGF 230

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
                P     A+D L  M   N+   P+  S +LLVA    S G T
Sbjct: 231 SEAKQPWK---AEDILQIMREYNV--EPK-KSTMLLVAEAWGSIGLT 271


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 2/167 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+             ++  +M   G  P    F++LI G  K   + +       + 
Sbjct: 436 YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLM 495

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +GF+PD+  +  LI         D A   FEEM ++ V+PN QTY  L++   +AG ++
Sbjct: 496 EHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVN 555

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIEL 208
               ++  M   G   D + +  LI +     K+ +A+D    ++  
Sbjct: 556 KAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRF 602



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 144/326 (44%), Gaps = 31/326 (9%)

Query: 12  KSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR---DVYDDMM 68
           +++ GAL RR  V  +G      R      SE   V   + S  R  L R   +V+  M 
Sbjct: 122 RALVGALWRRGPVVLSGRLVAEVRGCGCEVSE-ELVCALVESWGRLGLARYAHEVFVQMP 180

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
             G++P+  ++++LI  +++   +   +    QM A+G  PD   YN L+   G C+   
Sbjct: 181 RLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVH--GVCRRGI 238

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A+R+  +M+   ++PN  TY  L++    AG+++  + ++  M   G    +  Y  
Sbjct: 239 VDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRT 298

Query: 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM--GVSKEELYN--LPT 242
           L+      + R  D A +++        W   ETS + +    M   +SK+++    +  
Sbjct: 299 LVHGVFRCLER--DKAYRMLS------DWLGHETSLHPSACHTMLYCLSKKDMAKEAVEF 350

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNIR 300
           A+ +  RG  L    T + +      +  +V  +  LL+   K+  +P  DVYI++  I+
Sbjct: 351 AKRMSARGYLLDS--TAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMV--IK 406

Query: 301 CYLHSGDIDN-----GHKVFEDYICS 321
             L+  +        GH V +  + S
Sbjct: 407 SLLNCKNFSKANHYLGHMVLKGLLSS 432



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 2/183 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + +  N   +NT+++  +        + V   +M  G  P    F SLI G    
Sbjct: 457 KEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNT 516

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L D F   ++M   G  P+   YN L+       + ++AI +  +MK   V P+  ++
Sbjct: 517 HQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSF 576

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+ +     ++D    I  DM   G   D + Y  LI A  ++  R  + A +I+   
Sbjct: 577 NALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDE--RRVNKAKEILFAR 634

Query: 210 EQS 212
           E+S
Sbjct: 635 ERS 637



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 128/380 (33%), Gaps = 59/380 (15%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+  + R Y  +++ +  V++          L ++ D  + +G  P  D++  +I   + 
Sbjct: 351 AKRMSARGYLLDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLN 410

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
                    +   M   G L  V  YN +I    K    D+A  I +EM+     PN  T
Sbjct: 411 CKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVT 470

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           +  L++  +  G +     +++ +   G   D   +  LI    N   + DD      E+
Sbjct: 471 FNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCN-THQLDDAFVCFEEM 529

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
            E    W               GV        P A+               Y+V  H   
Sbjct: 530 AE----W---------------GVR-------PNAQ--------------TYNVLMHTLC 549

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
               V     LL  +K D  +PD Y     I  +     +D    +F D +     P + 
Sbjct: 550 SAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSY 609

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG-------SDLLLVAAGEKSG 381
            Y +L++            L  +  VN     +F   R G       S   +VAA  K G
Sbjct: 610 TYNSLIKA-----------LCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMG 658

Query: 382 GYTTANYIWDLMQARKITPS 401
            ++ A  + D   +R    S
Sbjct: 659 QFSEAGELMDKYLSRNAQSS 678



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 108/272 (39%), Gaps = 16/272 (5%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G++P    +  L+ G     R+++ F   D+MK  G  P  A Y  L+    +C   D+
Sbjct: 252 EGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDK 311

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A R+  +   +E   +      +L   +            + M+A G  LD   + G++ 
Sbjct: 312 AYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAF-GIVM 370

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
           + + K     D    + EL++     S ++  GN   +  + V K  L     ++  H  
Sbjct: 371 SCSLKCLEVSD----LCELLD-----SFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYL 421

Query: 250 G-----GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
           G     G LS +++ Y++      +   V   E +++ ++     P++      I  Y  
Sbjct: 422 GHMVLKGLLSSVMS-YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSK 480

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            G++ N   V +  +     P    + +L++G
Sbjct: 481 LGNVHNAKVVLKMLMEHGFMPDIITFTSLIDG 512


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 312 FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 371

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F   +   +  N   Y  L++    AG+
Sbjct: 372 DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGR 429

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T    R  D A  + + +E+ +G
Sbjct: 430 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH--RKVDEAIALFKRMEEEEG 480



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ Y +N   Y ++V  L   +    +R V  ++       T    ++LI    K   ++
Sbjct: 127 QKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVE 186

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +  +   +MK NG  P +  YN+L++        D A R+FE M+   +KP+  TY  ++
Sbjct: 187 ELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMI 246

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                AGQ       +RDM   G   DK  Y  +I A
Sbjct: 247 KGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQA 283



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 3/158 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     DG+      + SLI G  K  R+ +     ++M 
Sbjct: 382 YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS 441

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
             G   D   YN LI    K +  D+AI +F+ M++ E       TY  LL+      + 
Sbjct: 442 EKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRN 501

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
           +    +   M   G      C+  L T    + K+ RA
Sbjct: 502 EEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARA 539



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 4/154 (2%)

Query: 23  FVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL 82
           FV+S    E  +  +    S  N ++ S         L  V+  M  +G++PT   ++ L
Sbjct: 155 FVSS----EIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFL 210

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           + G +    +       + M++    PD+  YN +I    K   + +A+    +M+    
Sbjct: 211 MNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGH 270

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + +  TY+ ++ AC A        A+ ++M   G
Sbjct: 271 EADKITYMTMIQACYADSDFGSCVALYQEMDEKG 304


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 126/309 (40%), Gaps = 14/309 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  +   +      D Y +M+   + PT   +++LI G     +L+D      +M 
Sbjct: 212 YNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMI 271

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P V  ++ L+    K     +A  +F  M K +VKPN  TY  L+N      +++
Sbjct: 272 LENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVN 331

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
              +I   M   G   D   Y+ +I+    KI   D+ A K+ E +   + +  V T   
Sbjct: 332 KAESIFNTMAQIGVAPDVHSYSIMISGFC-KIKMVDE-AMKLFEEMHCKQIFPDVVTY-- 387

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
           N+  + +  S    Y L     +H RG      +  Y+    A  +   V     LL  L
Sbjct: 388 NSLIDGLCKSGRISYALKLIGEMHDRGQ--PPNIITYNSLLDALCKNHHVDKAIELLTKL 445

Query: 284 KKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGY 341
           K     P V  Y ++ N  C   SG + +  KVFED + +        Y T+++    G+
Sbjct: 446 KDHNIQPSVCTYNILINGLC--KSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIK----GF 499

Query: 342 TPKGMQLAQ 350
             KG  + Q
Sbjct: 500 CKKGFVIPQ 508


>gi|26449475|dbj|BAC41864.1| unknown protein [Arabidopsis thaliana]
 gi|29028966|gb|AAO64862.1| At5g25630 [Arabidopsis thaliana]
          Length = 574

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/324 (19%), Positives = 138/324 (42%), Gaps = 9/324 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ ++T Q+++  +  +  ++   G +     F+++I    +   ++D      +MK
Sbjct: 83  YTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMK 142

Query: 104 ANGFLPDVAVYNYLIS---VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G  P  + YN LI    + GK + S + + +  E    +V PN +T+  L+ A     
Sbjct: 143 ELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKK 202

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           +++  + +V+ M   G   D   Y  + T +  K     +T     E+VE+       + 
Sbjct: 203 KVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQK----GETVRAESEVVEKMVMKEKAKP 258

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAMETL 279
           +G      + G  +E         +V R     +   L V++   +   E+ D   ++ +
Sbjct: 259 NGRTCGIVVGGYCREGRVR-DGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEV 317

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
           L ++K+     DV      +  +  +G ++   +VF++ + +   P A  Y+ L +G + 
Sbjct: 318 LTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVR 377

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFL 363
              PK  +   +TL+  +  N+ +
Sbjct: 378 AKGPKKAEELLETLIVESRPNVVI 401



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM------KG 89
           N   +   Y+TV+ + +S         V+ +M+  GV+P    +  L  G +      K 
Sbjct: 325 NVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKGPKKA 384

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L +T     +       P+V ++  +IS  G C N   D A+R+F +M K+ V PN +
Sbjct: 385 EELLETLIVESR-------PNVVIFTTVIS--GWCSNGSMDDAMRVFNKMCKFGVSPNIK 435

Query: 148 TYVCLL 153
           T+  L+
Sbjct: 436 TFETLM 441


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 6/164 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            A  YN++++ L    R     D+ ++M+  G  P    + +LI G  K  +  D     
Sbjct: 53  TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVF 112

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM-KKYEVKPNGQTYVCLLNAC 156
           +Q+ A GF PDV  Y+ LI   G CK     +AI +F  M K     PN  TY  L++  
Sbjct: 113 EQLVARGFRPDVVTYSCLID--GLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
              G++D    ++  M   G+  D   Y  L+     K+ R DD
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFC-KLARLDD 213



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 12/255 (4%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           PT   ++SLI G  K  R  + +   ++M  +G +PD+  Y  LI+   K K SD A+R+
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHT 192
           FE++     +P+  TY CL++     G+L     +   M  +G+ + +   Y  LI+   
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 193 NKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF 252
            ++ + D+ A  ++E + ++     V T              ++ Y+L        R G 
Sbjct: 172 -RMGKMDE-AMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ---MTRKGL 226

Query: 253 LSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGH 312
              ++T   +    C E +   A+  L EM +K   SP VY     +  Y     ++   
Sbjct: 227 TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKS-CSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 313 K-VFEDYICSEKFPP 326
           K + E+  C    PP
Sbjct: 286 KFMLEEMDC----PP 296



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 2/125 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN++++      +     ++ + M   G  P    + +L+ G  K +RL D +   
Sbjct: 159 NTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLL 218

Query: 100 DQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           +QM   G  P+V  +  L+  +C + + SD A+ I  EM++    P   TY  +L+    
Sbjct: 219 NQMTRKGLTPNVVTFTSLMDGLCRENRLSD-AVHILGEMRRKSCSPTVYTYNTILDGYCR 277

Query: 159 AGQLD 163
             QL+
Sbjct: 278 VNQLE 282


>gi|42566234|ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01570
 gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21 [Arabidopsis thaliana]
 gi|24797024|gb|AAN64524.1| At4g01570/T15B16_21 [Arabidopsis thaliana]
 gi|332656643|gb|AEE82043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 805

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 7/156 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D++ + G +P    +  LI G  K  R+ D      +M+ NGF+PD  VYN L+    
Sbjct: 311 VWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTL 370

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-- 180
           K +   +A ++FE+M +  V+ +  TY  L++     G+ +  + +  D+   G  +D  
Sbjct: 371 KARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAI 430

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
            F   GL      K+    + A K++E +E ++G+S
Sbjct: 431 TFSIVGLQLCREGKL----EGAVKLVEEME-TRGFS 461



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++++S   +  F   R V D M  +        ++ +I G  K  R        D++ 
Sbjct: 633 YNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRLT 692

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   D+ +YN LI+  GK    D+A ++F+ MK   + P+  +Y  ++   + AG+L 
Sbjct: 693 KQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLK 752

Query: 164 PVYAIVRDMTAAGA 177
             Y  ++ M  AG 
Sbjct: 753 EAYKYLKAMLDAGC 766



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 8   YRHHKSVGGALGRRFFVTSAGAEEYARRNY-ANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
           Y ++  +   + + +F T+ G  +    N+ A + + YN ++  L    R  L   V D 
Sbjct: 631 YTYNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDR 690

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           +   G      ++++LI    K +RL +     D MK+NG  PDV  YN +I V  K   
Sbjct: 691 LTKQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGK 750

Query: 127 SDQAIRIFEEMKKYEVKPNGQT 148
             +A +  + M      PN  T
Sbjct: 751 LKEAYKYLKAMLDAGCLPNHVT 772



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 48/110 (43%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++SLI       + +D     D++K +G  PD + Y  LI  C K    D A+RI+ EM+
Sbjct: 292 YNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQ 351

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                P+   Y CLL+    A ++     +   M   G     + Y  LI
Sbjct: 352 YNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILI 401



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R  +  + F PD+  YN LI V      +  A+ +++E+K    +P+  TY  L+  C  
Sbjct: 277 RSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCK 336

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWS 216
           + ++D    I  +M   G   D   Y  L+  T    K+  A     K+++   ++  W+
Sbjct: 337 SYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWT 396



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 48/114 (42%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++S++   +K    Q      DQM  N    D+A YN +I   GK   +D A  + + + 
Sbjct: 633 YNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRLT 692

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           K     +   Y  L+NA   A +LD    +   M + G   D   Y  +I  ++
Sbjct: 693 KQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNS 746


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 22/214 (10%)

Query: 14  VGGALGRRFFVTSAGAEEYARRNYANNA----------------SEYNTVVTSLTS---Q 54
           + G+ G   F  SA    YAR   A  A                  YN V+ +       
Sbjct: 236 IAGSYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSYNAVIDACGKGGVD 295

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
            RF L    +  M+ DG+ P R  F+SL+    +   L+D     D+M   G   D+  Y
Sbjct: 296 LRFTL--GYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMIHLGSGRDIYTY 353

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N  +    KC N   A+++  +M+    KPN  TY  L++  +   + D    +   M +
Sbjct: 354 NTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMKS 413

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
               LD+ CY  L+  +  K  + D+ AT   E+
Sbjct: 414 LRIQLDRVCYNTLLAIYV-KTGKYDEIATVCEEM 446



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT V ++       L   V  DM  +  +P    + +L+ G  K  +  +    R++MK
Sbjct: 353 YNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYDEALKLREKMK 412

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +     D   YN L+++  K    D+   + EEM+K  ++ +  TY  L+N     G+LD
Sbjct: 413 SLRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLD 472

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  +V+DM A G       Y+ LI  ++
Sbjct: 473 MVAFLVQDMRAQGVAPSVLTYSTLIDIYS 501



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 6/176 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   YN+++     Q R  ++  +  DM   GV P+   + +LI    K 
Sbjct: 444 EEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKA 503

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
               D F      K +G   DV +++  I    K    + A+ + +EM K  +KPN  TY
Sbjct: 504 GMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTY 563

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             +++A   +       + + DM   G       Y G +   TN + R   +AT +
Sbjct: 564 NTIIDAFGKSKIFTEEDSDIGDMGIVGV------YGGQVVRVTNPVIRGGRSATDV 613



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 104/247 (42%), Gaps = 8/247 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++       ++  +  V ++M   G++     ++SLI G  K  RL    F    M+
Sbjct: 423 YNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNSLINGYGKQGRLDMVAFLVQDMR 482

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  P V  Y+ LI +  K      A  ++ + K+  +K +   +   ++  A  G ++
Sbjct: 483 AQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKADVVLFSSFIDTLAKNGLVE 542

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH-TNKIPRADDTATKIIELVEQSKGW-----SS 217
              +++ +M   G   +   Y  +I A   +KI   +D+    + +V    G      + 
Sbjct: 543 CALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEEDSDIGDMGIVGVYGGQVVRVTNP 602

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
           V   G +A +  M  S+E  + L   + + ++G  +   +  +    +AC+     +   
Sbjct: 603 VIRGGRSATDVRMRRSQELFFILELFQKMVQQG--VRPNVVTFSAILNACSRCNSFEDAA 660

Query: 278 TLLEMLK 284
            LLE L+
Sbjct: 661 LLLEQLR 667


>gi|255684866|gb|ACU27922.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684900|gb|ACU27939.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684902|gb|ACU27940.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684904|gb|ACU27941.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684906|gb|ACU27942.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684912|gb|ACU27945.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684916|gb|ACU27947.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684920|gb|ACU27949.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684924|gb|ACU27951.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684926|gb|ACU27952.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684928|gb|ACU27953.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684954|gb|ACU27966.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684960|gb|ACU27969.1| At1g03560-like protein [Arabidopsis thaliana]
          Length = 193

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 1   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 58

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F   +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 59  LCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRD 118

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T    R  D A  + + +E+ +G
Sbjct: 119 SYCYNALIDAFTKH--RKVDEAIALFKRMEEEEG 150



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 1/113 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     DG+      + SLI G  K  R+ +     ++M 
Sbjct: 52  YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS 111

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNA 155
             G   D   YN LI    K +  D+AI +F+ M++ E       TY  LL+ 
Sbjct: 112 EKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSG 164


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 28  GAEEYARR----NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
           GAE   RR        +   Y  ++  L    R    R V++ M   G++P   +F  LI
Sbjct: 169 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILI 228

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
               K    +       +M+  G  PD   YN +++   + ++   A  I  EM+   ++
Sbjct: 229 DAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLR 288

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           P+  TY  L++      +LD    I ++M A G GLD+  Y  LI+   +K  R+ D   
Sbjct: 289 PDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISG-LSKAGRSADAER 347

Query: 204 KIIELVE 210
            + E++E
Sbjct: 348 VLGEMME 354



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  +N ++  L         ++V+D+M   GV+ T   F+++I G  +   L        
Sbjct: 116 AKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHR 175

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M   G  PDV  Y  LI    +    + A  +FE+M    +KPN   +  L++A    G
Sbjct: 176 RMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKG 235

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             + +  + R+M   G   D   Y  ++    N + RA D
Sbjct: 236 DAETMLELHREMRERGVRPDAVTYNAIV----NGLCRARD 271



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 59/146 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +A  YN +V  L   R       +  +M   G++P    + +LI G  K  
Sbjct: 246 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 305

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L      +  M A G   D   Y  LIS   K   S  A R+  EM +  ++P+  TY 
Sbjct: 306 ELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYT 365

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            +++A    G +     ++++M   G
Sbjct: 366 MVIDAFCRKGDVKTGLRLLKEMQNKG 391



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 6/171 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++     +    +  ++  +M+ +GV      + +LI G  K  R  D      +M 
Sbjct: 294 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM 353

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   Y  +I    +  +    +R+ +EM+    KP   TY  ++N     GQ+ 
Sbjct: 354 EAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMK 413

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               ++  M   G   D   Y  L+  H       D      IE ++ +KG
Sbjct: 414 NADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD------IEELKSAKG 458



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 4/167 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R    NA  +  ++ +   +     + +++ +M   GV+P    +++++ G  + 
Sbjct: 210 EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA 269

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L+       +M++ G  PD   Y  LI   G CK    D A+ I + M    V  +  
Sbjct: 270 RDLKSASGIVVEMRSAGLRPDTVTYTTLID--GYCKEEELDMAMEIKQNMVAEGVGLDEV 327

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           TY  L++  + AG+      ++ +M  AG   D   Y  +I A   K
Sbjct: 328 TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRK 374



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 54/131 (41%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y  ++  G+ P   LF+ L+   ++   L       D+M++ G    V  +N +IS   +
Sbjct: 104 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 163

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             + D A  +   M +  V P+  TY  L+      G+++    +   M   G   +   
Sbjct: 164 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV 223

Query: 184 YAGLITAHTNK 194
           +  LI AH  K
Sbjct: 224 FTILIDAHCKK 234


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+ +      +    D++  M   GV P R  F++ +    +  + Q       +M+
Sbjct: 405 YNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREME 464

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A    P+V  Y   +  CG+    ++A+ + EEM+   V  N  TY   ++AC   G +D
Sbjct: 465 ARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVD 524

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
            V  ++ +M   G   +   Y   + A  N++ + D  +  + ++V++
Sbjct: 525 RVLVLLEEMDGKGVEPNVVSYTIAMDA-MNRVGKWDRASAVLEQMVQR 571



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 7/214 (3%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           F   I    +  R ++      +M+A G  PD+  +N  +   GK    D A+ +F E++
Sbjct: 229 FTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIE 288

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
            +   PN  +Y   ++AC  AG +D  + ++R+M       D   Y  ++ A   K    
Sbjct: 289 DHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKK---- 344

Query: 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
            +     +EL+ + K    V+    +    M   +K   +   T       G  L   + 
Sbjct: 345 -NQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVV 403

Query: 259 VYHVAFHACAELKD-VQAMETLLEMLKKDRKSPD 291
            Y+   HAC    + +QA++ L  M+++   +PD
Sbjct: 404 SYNTVMHACGRAGEYLQALD-LFGMMEEVGVAPD 436



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +   + +    RR+     V  +M   G++P    F++ +    K  +         +++
Sbjct: 229 FTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLALELFTEIE 288

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +GF P++  YN  I  CG+    D+A  +  EM+   V+P+  +Y  ++ A A   Q  
Sbjct: 289 DHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWK 348

Query: 164 PVYAIVRDMT-AAGAGLDKFCY--AGLITAHTNKIPRADDTATKII 206
               ++ +M  A G   D   Y  A  + A   +  RA +  T+ +
Sbjct: 349 AALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEAL 394


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 5/181 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +R++A +   YNT++ +L    R       +  M  +G  PT   F+++I G  +  
Sbjct: 157 EARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRAR 216

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           RL D     ++M    F P++  Y+ +I   G CK+   D+A ++ + M     +P+   
Sbjct: 217 RLADALEVFNEMIDRDFHPNLVTYSVVID--GLCKSDQLDEAQQLLDRMVSEGCRPDLVA 274

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L+   +AAG+LD    ++R M + G   D   Y  +I     K+ R DD      EL
Sbjct: 275 YTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVID-KLCKVGRVDDAHEIFREL 333

Query: 209 V 209
           V
Sbjct: 334 V 334



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R++  N   Y+ V+  L    +    + + D M+ +G +P    +  L++G     
Sbjct: 227 EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 286

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL        +M + G +PDV  Y  +I    K    D A  IF E+   +  PN  TY 
Sbjct: 287 RLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYS 346

Query: 151 CLLNACAAAGQLDPVYAIVRDMTA 174
            L+     A ++D    ++R+M  
Sbjct: 347 ALIGGYCRASRVDEGGKVMREMAC 370



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN +V  L  Q R    R V  +       P    +++L+    +  R+ +     
Sbjct: 131 NAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF 190

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM   G++P +  +N +I+   + +    A+ +F EM   +  PN  TY  +++    +
Sbjct: 191 TQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKS 250

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            QLD    ++  M + G   D   Y  L+
Sbjct: 251 DQLDEAQQLLDRMVSEGCRPDLVAYTPLV 279



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 1/172 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y      +N ++T L   RR     +V+++M+     P    +  +I G  K  +L +  
Sbjct: 198 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQ 257

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D+M + G  PD+  Y  L+         D A+ +   M      P+  TY  +++  
Sbjct: 258 QLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 317

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
              G++D  + I R++ A     +   Y+ LI  +  +  R D+    + E+
Sbjct: 318 CKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYC-RASRVDEGGKVMREM 368



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 110/274 (40%), Gaps = 25/274 (9%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQ 129
           QP    + +LI G  K  R+   F  FR  + A G  P+   YN L+   G CK    D 
Sbjct: 93  QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVD--GLCKQDRLDA 150

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A  +  E +K +  P+  TY  L+ A    G++D   A    MT  G       +  +IT
Sbjct: 151 ARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIIT 210

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
               +  R  D      E++++    + V  S       + G+ K +   L  A+ +  R
Sbjct: 211 GLC-RARRLADALEVFNEMIDRDFHPNLVTYS-----VVIDGLCKSD--QLDEAQQLLDR 262

Query: 250 ---GGFLSRLL--TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCY 302
               G    L+  T   + F A   L        LL  +      PDV  Y V+ +  C 
Sbjct: 263 MVSEGCRPDLVAYTPLVLGFSAAGRLDSALG---LLRRMVSQGCIPDVVTYTVVIDKLCK 319

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +  G +D+ H++F + + ++  P    Y+ L+ G
Sbjct: 320 V--GRVDDAHEIFRELVANKCSPNVVTYSALIGG 351



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/302 (19%), Positives = 110/302 (36%), Gaps = 26/302 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMML-DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           Y T++  L    R     D++  M+   G +P    +++L+ G  K  RL        + 
Sbjct: 99  YTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEA 158

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +   F PDV  YN L++   +    D+A+  F +M +    P   ++  ++     A +L
Sbjct: 159 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 218

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                +  +M      +D+  +  L+T          D   K  +L E  +    + + G
Sbjct: 219 ADALEVFNEM------IDRDFHPNLVTYSV-----VIDGLCKSDQLDEAQQLLDRMVSEG 267

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT--------VYHVAFHACAELKDVQ 274
              +   +      +     A  +    G L R+++         Y V      ++  V 
Sbjct: 268 CRPD---LVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVD 324

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               +   L  ++ SP+V      I  Y  +  +D G KV  +  C    P    Y T++
Sbjct: 325 DAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMI 381

Query: 335 EG 336
            G
Sbjct: 382 WG 383


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 14/262 (5%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           L  V  DM   GV+P    +  LI    K   L+  +   + M+  G  P+V VY  +I+
Sbjct: 117 LAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVIA 176

Query: 120 VCGKCKNSDQAIRIFEEMKKYE---VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA-A 175
             GK  +     R F EM++     V+PN  TY  ++++      +D + A+V  M A  
Sbjct: 177 TLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADP 236

Query: 176 GAGLDKFCYAGLITAHTNKIPRAD--DTATKIIELVEQSKGWSSVETSGNNAENEMMGVS 233
           G GLD F ++ ++ A +    RA   D A +  + +  + G  S+      A   M+G +
Sbjct: 237 GLGLDNFTHSAVVAAWS----RAGRVDKALEAFDSIAATGGQPSLHAW--TAILHMLGTA 290

Query: 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
                 L T + + R G  +     VY+   +A  + +++ +M    + +++D  + DV 
Sbjct: 291 GRSDEMLRTLDKMKRLG--VKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVK 348

Query: 294 IVMQNIRCYLHSGDIDNGHKVF 315
                I  +  +G      K +
Sbjct: 349 TYNTLIDTWAKTGKAVEAEKFY 370



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 4/182 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R   A +   YNT++ +     +       Y  M  +G+QPT     SL+    +  + +
Sbjct: 340 RDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTRADQFE 399

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF-EEMKKYEVKPNGQTYVCL 152
                  +MK  G  PD  V+N LI   G+    ++A ++    MK+Y +      +  +
Sbjct: 400 KVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYGIALETNNFTSV 459

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD-DTATKIIELVEQ 211
           + A A  G LD     +  M    A   K     L T  +  IP AD     ++I ++EQ
Sbjct: 460 IEAWARNGNLDKAEEWLHRMNTDYA--TKPDIKTLTTLLSFCIPAADVKRGRRVIHMIEQ 517

Query: 212 SK 213
            K
Sbjct: 518 HK 519



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 5/170 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ VV + +   R     + +D +   G QP+   + +++       R  +     D+MK
Sbjct: 245 HSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMK 304

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P  AVYN +I+  GK +N    +  F+ M++  V  + +TY  L++  A  G+  
Sbjct: 305 RLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAV 364

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                   M   G     +  A L+ A+T    RAD    K++ L+ + K
Sbjct: 365 EAEKFYVLMKREGLQPTMYTIASLMDAYT----RADQF-EKVLRLISRMK 409


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 117/273 (42%), Gaps = 20/273 (7%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ PT  ++++LI G  +   L+  F   +QMK+    PD   YN LI+   K +   +A
Sbjct: 364 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 423

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +  EM+K  V P+ +T+  L++A   AGQL+  + ++ DM   G   D   +  ++ A
Sbjct: 424 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 483

Query: 191 --HTNKIPRA----DDTATKIIELVEQSKGWSS-VETSGNNAENEMMGVSKEELYNLPTA 243
                KIP A    DD   K  ++   ++ ++S ++    + + E   +  E++ N    
Sbjct: 484 FCKNGKIPEAVAILDDMIYK--DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKN---- 537

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
                  G  + ++T Y++          +   E L+  L+     PDV      I    
Sbjct: 538 ------SGVSASIVT-YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 590

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           + GD D   ++ ++       P    Y TLV  
Sbjct: 591 NKGDTDKALELLQEMNKYGIRPTLRTYHTLVSA 623



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 35  RNYANNASEYNTVV----TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           ++ A NA  YN+++     S  +++ F L+    + M   GV  +   ++ L+ G  + S
Sbjct: 503 KDVAPNAQVYNSIIDAYIESGDTEQAFLLV----EKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++ +       ++  G  PDV  YN +IS C    ++D+A+ + +EM KY ++P  +TY 
Sbjct: 559 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYH 618

Query: 151 CLLNACAAAGQLDPVYAIVRDM 172
            L++A A+AG++  +  + + M
Sbjct: 619 TLVSALASAGRVHDMECLYQQM 640



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN V+  L    +      V+D+M+  GV P    ++++I G +KG  L+  F  R
Sbjct: 193 DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLR 252

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM  +G  P++  YN L+S   +    D+   + +EM  + + P+G TY  L +     
Sbjct: 253 DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 312

Query: 160 GQ 161
           G+
Sbjct: 313 GE 314



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 63/147 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R+   +   YN ++  L          D+  +M   GV P+ + F++LI      
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+  F     M+  G   DV  +  ++    K     +A+ I ++M   +V PN Q Y
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             +++A   +G  +  + +V  M  +G
Sbjct: 513 NSIIDAYIESGDTEQAFLLVEKMKNSG 539



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 5/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++ +  +  +      V  DM   G++     F S++    K  ++ +     D M 
Sbjct: 442 FNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI 501

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P+  VYN +I    +  +++QA  + E+MK   V  +  TY  LL     + Q+D
Sbjct: 502 YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID 561

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
               ++  +   G   D   Y  +I+A  NK     DT  K +EL+++
Sbjct: 562 EAEELIYTLRNQGLRPDVVSYNTIISACCNK----GDT-DKALELLQE 604



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 9/279 (3%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           F LRD    M+ DG +P    ++ L+ G  +  R+ +T    D+M ++   PD   Y+ L
Sbjct: 249 FRLRD---QMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSIL 305

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
                +   S   + +F E  K  V     T   LLN     G++     ++  +   G 
Sbjct: 306 FDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 365

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
                 Y  LI  +     R    A  I E + +S+       + N   N   G+ K E+
Sbjct: 366 VPTTVIYNTLINGYCQV--RDLRGAFCIFEQM-KSRHIRPDHITYNALIN---GLCKLEM 419

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
                   +      +   +  ++    A      ++   T+L  +++     DV     
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 479

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            ++ +  +G I     + +D I  +  P A++Y ++++ 
Sbjct: 480 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDA 518


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 28  GAEEYARR----NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI 83
           GAE   RR        +   Y  ++  L    R    R V++ M   G++P   +F  LI
Sbjct: 293 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILI 352

Query: 84  VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
               K    +       +M+  G  PD   YN +++   + ++   A  I  EM+   ++
Sbjct: 353 DAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLR 412

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           P+  TY  L++      +LD    I ++M A G GLD+  Y  LI+   +K  R+ D   
Sbjct: 413 PDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISG-LSKAGRSADAER 471

Query: 204 KIIELVE 210
            + E++E
Sbjct: 472 VLGEMME 478



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  +N ++  L         ++V+D+M   GV+ T   F+++I G  +   L        
Sbjct: 240 AKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHR 299

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M   G  PDV  Y  LI    +    + A  +FE+M    +KPN   +  L++A    G
Sbjct: 300 RMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKG 359

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             + +  + R+M   G   D   Y  ++    N + RA D
Sbjct: 360 DAETMLELHREMRERGVRPDAVTYNAIV----NGLCRARD 395



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 59/146 (40%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +A  YN +V  L   R       +  +M   G++P    + +LI G  K  
Sbjct: 370 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE 429

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L      +  M A G   D   Y  LIS   K   S  A R+  EM +  ++P+  TY 
Sbjct: 430 ELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYT 489

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            +++A    G +     ++++M   G
Sbjct: 490 MVIDAFCRKGDVKTGLRLLKEMQNKG 515



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 6/171 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++     +    +  ++  +M+ +GV      + +LI G  K  R  D      +M 
Sbjct: 418 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM 477

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   Y  +I    +  +    +R+ +EM+    KP   TY  ++N     GQ+ 
Sbjct: 478 EAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMK 537

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               ++  M   G   D   Y  L+  H       D      IE ++ +KG
Sbjct: 538 NADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD------IEELKSAKG 582



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 4/167 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R    NA  +  ++ +   +     + +++ +M   GV+P    +++++ G  + 
Sbjct: 334 EKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRA 393

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L+       +M++ G  PD   Y  LI   G CK    D A+ I + M    V  +  
Sbjct: 394 RDLKSASGIVVEMRSAGLRPDTVTYTTLID--GYCKEEELDMAMEIKQNMVAEGVGLDEV 451

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           TY  L++  + AG+      ++ +M  AG   D   Y  +I A   K
Sbjct: 452 TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRK 498



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 54/131 (41%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y  ++  G+ P   LF+ L+   ++   L       D+M++ G    V  +N +IS   +
Sbjct: 228 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 287

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             + D A  +   M +  V P+  TY  L+      G+++    +   M   G   +   
Sbjct: 288 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV 347

Query: 184 YAGLITAHTNK 194
           +  LI AH  K
Sbjct: 348 FTILIDAHCKK 358


>gi|3695380|gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
          Length = 508

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 7/156 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D++ + G +P    +  LI G  K  R+ D      +M+ NGF+PD  VYN L+    
Sbjct: 311 VWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTL 370

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-- 180
           K +   +A ++FE+M +  V+ +  TY  L++     G+ +  + +  D+   G  +D  
Sbjct: 371 KARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAI 430

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
            F   GL      K+    + A K++E +E ++G+S
Sbjct: 431 TFSIVGLQLCREGKL----EGAVKLVEEME-TRGFS 461



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 48/110 (43%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++SLI       + +D     D++K +G  PD + Y  LI  C K    D A+RI+ EM+
Sbjct: 292 YNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQ 351

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                P+   Y CLL+    A ++     +   M   G     + Y  LI
Sbjct: 352 YNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILI 401



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R  +  + F PD+  YN LI V      +  A+ +++E+K    +P+  TY  L+  C  
Sbjct: 277 RSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCK 336

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWS 216
           + ++D    I  +M   G   D   Y  L+  T    K+  A     K+++   ++  W+
Sbjct: 337 SYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWT 396


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ S+   +R +    ++ D++ +G +P    + +LI    +    +D      QMK
Sbjct: 316 YNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMK 375

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQL 162
             G    V +YN L+S+C      D+A  IF++MK     +P+  T+  L+   +  G++
Sbjct: 376 GKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRV 435

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD---TATKIIEL 208
               A +R+M  AG     F    LI  +  K  + DD   T  +++EL
Sbjct: 436 SEAEAALREMREAGFEPTLFVLTSLIQCY-GKAKQVDDVVRTFEQVLEL 483



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 1/132 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y++M   GV+P   +++ L+    K  R          + +NGF P+ + Y  LI   
Sbjct: 299 NIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAY 358

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLD 180
           G+ +  + A+ I+ +MK   ++     Y  LL+ CA  G +D  + I +DM ++G    D
Sbjct: 359 GRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPD 418

Query: 181 KFCYAGLITAHT 192
            + ++ LIT ++
Sbjct: 419 SWTFSSLITVYS 430



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 68  MLDGVQPTRD-LFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +L+ ++PTR+ + +++ +   + S+ L+ +    D+M   G  PD A +  LIS   +C 
Sbjct: 163 LLETLKPTREVILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCG 222

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
             ++A+  FE+M  + ++P+  T   +++A   AG ++   ++          +D   ++
Sbjct: 223 LPNRAVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFS 282

Query: 186 GLI 188
            LI
Sbjct: 283 TLI 285



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 62  DVYDDMMLDGV-QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +++ DM   G  +P    F SLI       R+ +      +M+  GF P + V   LI  
Sbjct: 404 EIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQC 463

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            GK K  D  +R FE++ +  ++P+ +   CLLN
Sbjct: 464 YGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLN 497



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 15/263 (5%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + ++ M   G++P      ++I    +   ++      D+ +   +  D   ++ LI + 
Sbjct: 229 EWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIY 288

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G   N D  + I+EEMK   VKPN   Y  LL++   A +      I +D+ + G   + 
Sbjct: 289 GYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNW 348

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-----AENEMMGVSKEE 236
             YA LI A+     R  + A  I   + + KG        N      A+   +  + E 
Sbjct: 349 STYAALIRAYGRA--RYGEDALVIYRQM-KGKGMELTVLLYNTLLSMCADIGYVDEAFEI 405

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVM 296
             ++ ++          S L+TVY      C  + + +A    L  +++    P ++++ 
Sbjct: 406 FQDMKSSGTCEPDSWTFSSLITVY----SCCGRVSEAEAA---LREMREAGFEPTLFVLT 458

Query: 297 QNIRCYLHSGDIDNGHKVFEDYI 319
             I+CY  +  +D+  + FE  +
Sbjct: 459 SLIQCYGKAKQVDDVVRTFEQVL 481


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 6/178 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN ++  L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 508 DVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D M +  F PDV  +N LI+  G CK    D  + +F EM +  +  +  TY+ L+    
Sbjct: 568 DSMGSKSFSPDVVTFNTLIT--GYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFR 625

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
               +D    I ++M ++G   D      ++T   +K     + A  ++E ++ S G+
Sbjct: 626 KVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSK--EELERAVAMLEDLQMSVGY 681



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 133/323 (41%), Gaps = 27/323 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   ++ ++ +   + +FF   ++YD+M+   + P+   + S+I G  K 
Sbjct: 312 QEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQ 371

Query: 90  SRLQ--DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           +RL   +  F+    K  G  PD+  +N LI+   + K  D  I++  EM +  +  N  
Sbjct: 372 NRLDAAEHMFYLTPTK--GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTI 429

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAG-----LITAHTN 193
           TY  L++     G L+    ++++M ++G           LD  C  G     L      
Sbjct: 430 TYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAM 489

Query: 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFL 253
           +  + D  A++    VE      ++   G    NE   +  EELY     E  HR  G +
Sbjct: 490 QKSKMDIDASRPFNGVEPDVQTYNILICG--LINEGKFLEAEELYE----EMPHR--GIV 541

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
              +T   +    C + +  +A +    M  K   SPDV      I  Y  +G +D+G +
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-SPDVVTFNTLITGYCKAGMVDDGLE 600

Query: 314 VFEDYICSEKFPPAELYATLVEG 336
           +F +         A  Y TL+ G
Sbjct: 601 LFCEMGQRGIVADAITYITLIYG 623



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 160/385 (41%), Gaps = 23/385 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D M+ DG+QP +  + +++ G  K G  +      
Sbjct: 181 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 240

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R   + +  +P+V +YN +I    K      A  +F EM++ E+ P+  TY C++N    
Sbjct: 241 RKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCI 300

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKII--ELVEQSKG 214
           +G+      ++++M       D   ++ LI A     K   A++   +++   ++  +  
Sbjct: 301 SGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVT 360

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           +SS+   G   +N  +  ++   Y  PT        G    ++T   +    C   +   
Sbjct: 361 YSSM-IDGFCKQNR-LDAAEHMFYLTPTK-------GCSPDIITFNTLIAGYCRAKRVDD 411

Query: 275 AMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
            ++ L EM +    +  + Y  +  I  +   GD++    + ++ I S   P      TL
Sbjct: 412 GIKLLHEMTEAGLVANTITYTTL--IHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTL 469

Query: 334 VEGAM-FGYTPKGMQL---AQDTLVNMNSRNIF--LSPRMGSDLLLVAAGEKSGGYTTAN 387
           ++G    G     +++    Q + +++++   F  + P + +  +L+      G +  A 
Sbjct: 470 LDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAE 529

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            +++ M  R I P      +  +GL
Sbjct: 530 ELYEEMPHRGIVPDTITYSSMIDGL 554


>gi|260780314|gb|ACX50703.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780316|gb|ACX50704.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780320|gb|ACX50706.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780322|gb|ACX50707.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780326|gb|ACX50709.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780328|gb|ACX50710.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780334|gb|ACX50713.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780336|gb|ACX50714.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780350|gb|ACX50721.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780354|gb|ACX50723.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780356|gb|ACX50724.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780360|gb|ACX50726.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780362|gb|ACX50727.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780364|gb|ACX50728.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780366|gb|ACX50729.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780368|gb|ACX50730.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780370|gb|ACX50731.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780372|gb|ACX50732.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780374|gb|ACX50733.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780376|gb|ACX50734.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780378|gb|ACX50735.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780380|gb|ACX50736.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780382|gb|ACX50737.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780384|gb|ACX50738.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780386|gb|ACX50739.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780390|gb|ACX50741.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780392|gb|ACX50742.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  Q +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 62/116 (53%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V+  M+ +G++P    +++LI         ++ F   D+MK +GF PDV  Y  LIS 
Sbjct: 227 KAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIST 286

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            G+ +   +A  +F+ MK+ + KPN  +Y  L++A  + G L     I+R+M   G
Sbjct: 287 FGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDG 342



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 129/342 (37%), Gaps = 56/342 (16%)

Query: 77  DLFHSLIVGTMKGSRLQDT--FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
           D+++ +I    + +R+      FF  +M+     PDV  YN LI+  G+      A  I 
Sbjct: 31  DIYNMMIRLHARHNRIDQARGLFF--EMQKWRCKPDVETYNALINAHGRAGQWRWATNIM 88

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           E+M +  + P+  T+  L+NAC + G       + + MT  G G D   +  +++A+ + 
Sbjct: 89  EDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSG 148

Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
                          + SK  S  E                             +G  + 
Sbjct: 149 --------------AQYSKALSYFEL---------------------------MKGTNIR 167

Query: 255 RLLTVYHVAFHACAELKDV-QAMETLLEMLKKDRKS-PDVYIVMQNIRCYLHSGDIDNGH 312
              T  ++  H   ++K   QA+E    M +K  +  PDV      I  Y   G I++  
Sbjct: 168 PDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCK 227

Query: 313 KVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLL 372
            VF   +     P    Y  L+      Y   GM     ++ +   R+ F  P + S   
Sbjct: 228 AVFSTMLAEGIKPNIVSYNALIS----AYASHGMDKEAFSVFDEMKRSGF-CPDVVSYTS 282

Query: 373 LVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414
           L++   +S     A  ++D+M+  K  P+L +    YN L D
Sbjct: 283 LISTFGRSQQPARAREVFDMMKRNKCKPNLVS----YNALMD 320



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMK-GSRLQDTFFFR 99
           S +N ++ +  S   +     V   M  +GV P  DL  H++++   K G++      + 
Sbjct: 101 STFNNLINACGSCGNWREALRVCKKMTDNGVGP--DLVTHNIVLSAYKSGAQYSKALSYF 158

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACA 157
           + MK     PD    N +I    K K   QAI IF  M  K+ E +P+  T+  +++  +
Sbjct: 159 ELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYS 218

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             GQ++   A+   M A G   +   Y  LI+A+ +
Sbjct: 219 VRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYAS 254



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 57/128 (44%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +RNY      YN ++       R    R ++ +M     +P  + +++LI    +  + +
Sbjct: 23  QRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWR 82

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 + M      P  + +N LI+ CG C N  +A+R+ ++M    V P+  T+  +L
Sbjct: 83  WATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVL 142

Query: 154 NACAAAGQ 161
           +A  +  Q
Sbjct: 143 SAYKSGAQ 150



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 39/84 (46%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PD   +  LIS C +    ++A+  F+EM    +  + + Y  ++ A +  GQL    ++
Sbjct: 415 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESL 474

Query: 169 VRDMTAAGAGLDKFCYAGLITAHT 192
              +  +G   D   Y  +I A++
Sbjct: 475 FNSLKGSGCCPDLVTYTAMINAYS 498



 Score = 38.9 bits (89), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 55/129 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y  M     +P    F  LI G  + S+ ++   F  +M          +Y+ +I   
Sbjct: 403 NLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAY 462

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A  +F  +K     P+  TY  ++NA +A+   + V A+ ++M A    LD 
Sbjct: 463 SKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDS 522

Query: 182 FCYAGLITA 190
              + L+ A
Sbjct: 523 IACSALMKA 531


>gi|260780324|gb|ACX50708.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780342|gb|ACX50717.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780358|gb|ACX50725.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780388|gb|ACX50740.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  Q +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|255684868|gb|ACU27923.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684870|gb|ACU27924.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684872|gb|ACU27925.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684874|gb|ACU27926.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684876|gb|ACU27927.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684878|gb|ACU27928.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684880|gb|ACU27929.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684882|gb|ACU27930.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684884|gb|ACU27931.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684886|gb|ACU27932.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684888|gb|ACU27933.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684890|gb|ACU27934.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684892|gb|ACU27935.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684894|gb|ACU27936.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684896|gb|ACU27937.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684898|gb|ACU27938.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684908|gb|ACU27943.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684910|gb|ACU27944.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684914|gb|ACU27946.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684918|gb|ACU27948.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684922|gb|ACU27950.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684930|gb|ACU27954.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684932|gb|ACU27955.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684934|gb|ACU27956.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684936|gb|ACU27957.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684938|gb|ACU27958.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684940|gb|ACU27959.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684942|gb|ACU27960.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684944|gb|ACU27961.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684946|gb|ACU27962.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684948|gb|ACU27963.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684950|gb|ACU27964.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684952|gb|ACU27965.1| At1g03560-like protein [Arabidopsis thaliana]
          Length = 193

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 1   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 58

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F   +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 59  LCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRD 118

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T    R  D A  + + +E+ +G
Sbjct: 119 SYCYNALIDAFTKH--RKVDEAIALFKRMEEEEG 150



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 42/98 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     DG+      + SLI G  K  R+ +     ++M 
Sbjct: 52  YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS 111

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K +  D+AI +F+ M++ E
Sbjct: 112 EKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEE 149


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 62/116 (53%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V+  M+ +G++P    +++LI         ++ F   D+MK +GF PDV  Y  LIS 
Sbjct: 132 KAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIST 191

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            G+ +   +A  +F+ MK+ + KPN  +Y  L++A  + G L     I+R+M   G
Sbjct: 192 FGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDG 247



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMK-GSRLQDTFFFR 99
           S +N ++ +  S   +     V   M  +GV P  DL  H++++   K G++      + 
Sbjct: 6   STFNNLINACGSCGNWREALRVCKKMTDNGVGP--DLVTHNIVLSAYKSGAQYSKALSYF 63

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACA 157
           + MK     PD    N +I    K K   QAI IF  M  K+ E +P+  T+  +++  +
Sbjct: 64  ELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYS 123

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             GQ++   A+   M A G   +   Y  LI+A+ +
Sbjct: 124 VRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYAS 159



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 39/84 (46%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PD   +  LIS C +    ++A+  F+EM    +  + + Y  ++ A +  GQL    ++
Sbjct: 320 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESL 379

Query: 169 VRDMTAAGAGLDKFCYAGLITAHT 192
              +  +G   D   Y  +I A++
Sbjct: 380 FNSLKGSGCCPDLVTYTAMINAYS 403



 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 55/129 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y  M     +P    F  LI G  + S+ ++   F  +M          +Y+ +I   
Sbjct: 308 NLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAY 367

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A  +F  +K     P+  TY  ++NA +A+   + V A+ ++M A    LD 
Sbjct: 368 SKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDS 427

Query: 182 FCYAGLITA 190
              + L+ A
Sbjct: 428 IACSALMKA 436


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 147/379 (38%), Gaps = 47/379 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L    +     ++   M+  G +P    F  LI G  +   +       
Sbjct: 278 NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 337

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M+    +P    Y  +I+    CK+   A ++ E+M    +KPN   Y  L+   A+ 
Sbjct: 338 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASE 397

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+++    ++  M+ +G   D FCY  +I+   +K  + ++ +T ++E+  Q +G     
Sbjct: 398 GRIEEARRLLDGMSCSGVAPDIFCYNAIISC-LSKAGKMEEASTYLLEI--QGRGLKPDA 454

Query: 220 TS------GNNAENEMMGVSK--EELY------NLPTAEYV---HRRGGFLSRLLTVYHV 262
            +      G +   +M   +K  +E+       N P    +   H + G L   L+++  
Sbjct: 455 VTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR- 513

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             HA   L DVQ     +  L                   L +G +    KVF +     
Sbjct: 514 HLHALGVLPDVQTCSAFIHGL-------------------LKNGRVQEALKVFSELKEKG 554

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
             P    Y++L+ G    G   K  +L  +  +   + NIF+   +   L       KSG
Sbjct: 555 LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC------KSG 608

Query: 382 GYTTANYIWDLMQARKITP 400
               A  ++D M  + + P
Sbjct: 609 DIQRARKLFDGMPEKGLEP 627



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 65/146 (44%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +    +   Y+++++    Q       +++D+M L G+ P   ++++L+ G  K  
Sbjct: 549 ELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSG 608

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +Q      D M   G  PD   Y+ +I    K +N  +A  +F EM    V+P+   Y 
Sbjct: 609 DIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYN 668

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            L++ C   G ++    + R+M   G
Sbjct: 669 ALVHGCCKEGDMEKAMNLFREMLQKG 694



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 120/307 (39%), Gaps = 6/307 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +RN   +A  Y  ++  L   +   L   + + M   G++P   ++ +LI+G    
Sbjct: 338 DEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASE 397

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++     D M  +G  PD+  YN +IS   K    ++A     E++   +KP+  T+
Sbjct: 398 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 457

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
              +   +  G++        +M   G   +   Y  LI  H       +  A  I   +
Sbjct: 458 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME--ALSIFRHL 515

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
                   V+T        +     +E   + +     +  G +  + T   +    C +
Sbjct: 516 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE---LKEKGLVPDVFTYSSLISGFCKQ 572

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
            +  +A E   EM  K   +P+++I    +     SGDI    K+F+        P +  
Sbjct: 573 GEVEKAFELHDEMCLKGI-APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 631

Query: 330 YATLVEG 336
           Y+T+++G
Sbjct: 632 YSTMIDG 638



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ ++   G+ P    + SLI G  K   ++  F   D+M   G  P++ +YN L+   G
Sbjct: 546 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVD--G 603

Query: 123 KCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK+ D  +A ++F+ M +  ++P+  TY  +++    +  +   +++  +M + G    
Sbjct: 604 LCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 663

Query: 181 KFCYAGLI 188
            F Y  L+
Sbjct: 664 SFVYNALV 671



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V     +       +++ +M+  G   T   F++LI G  K  ++Q+      +M 
Sbjct: 667 YNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMI 725

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A   +PD   Y  +I    K    ++A  +F+EM++  +  +  TY  L+      GQ  
Sbjct: 726 AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSS 785

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            V+A+   M A G   D+  Y  +I AH  +
Sbjct: 786 EVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 816



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 136/349 (38%), Gaps = 52/349 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +  A N   YN +V  L         R ++D M   G++P    + ++I G  K 
Sbjct: 583 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 642

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVC---------------------------- 121
             + + F    +M + G  P   VYN L+  C                            
Sbjct: 643 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 702

Query: 122 ----GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
               G CK+    +A ++F+EM   ++ P+  TY  +++    AG+++    + ++M   
Sbjct: 703 TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 762

Query: 176 GAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS------GNNAENEM 229
              +D   Y  L+  + NK+ ++ +      ++V  +KG    E +       +  E+ +
Sbjct: 763 NLIVDTVTYTSLMYGY-NKLGQSSEVFALFEKMV--AKGVKPDEVTYGLVIYAHCKEDNL 819

Query: 230 MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
           +     E + L   E V +  G L++  T++ +   A  + +D+     LL+ + +    
Sbjct: 820 V-----EAFKL-RDEVVGK--GMLTK-GTIHDLLITALCKREDLTEASKLLDEMGELGLK 870

Query: 290 PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
           P +      +R +  +G +D   +VFE        P       LV G +
Sbjct: 871 PSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNL 919



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 119/333 (35%), Gaps = 53/333 (15%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           GV P      + I G +K  R+Q+      ++K  G +PDV  Y+ LIS  G CK    +
Sbjct: 519 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS--GFCKQGEVE 576

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A  + +EM    + PN   Y  L++    +G +     +   M   G   D   Y+ +I
Sbjct: 577 KAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMI 636

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
             +                     K  +  E      E    GV                
Sbjct: 637 DGYC--------------------KSENVAEAFSLFHEMPSKGVQPHSF----------- 665

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQ-AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
                     VY+   H C +  D++ AM    EML+K   +   +  +  I  Y  S  
Sbjct: 666 ----------VYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTL--IDGYCKSCK 713

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRM 367
           I    ++F++ I  +  P    Y T+++   +      M+ A      M  RN+ +    
Sbjct: 714 IQEASQLFQEMIAKQIMPDHVTYTTVID---WHCKAGKMEEANLLFKEMQERNLIVDTVT 770

Query: 368 GSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            + L+      K G  +    +++ M A+ + P
Sbjct: 771 YTSLMY--GYNKLGQSSEVFALFEKMVAKGVKP 801



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 111/314 (35%), Gaps = 19/314 (6%)

Query: 102 MKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           M   G +P+   Y Y I   G C  K  ++A   FEEM+K  +KP+      L++     
Sbjct: 200 MGEKGLVPNT--YTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 257

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWSS 217
           G +D V  I   M + G  ++   Y  LI       K+ +A +    +I L  +    + 
Sbjct: 258 GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 317

Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
                       MG + E L  +     V             Y    +     KD+    
Sbjct: 318 CLLIEGYCREHNMGRALELLDEMEKRNLVPSA--------VSYGAMINGLCHCKDLSLAN 369

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
            LLE +      P+V +    I  Y   G I+   ++ +   CS   P    Y  ++  +
Sbjct: 370 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAII--S 427

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK 397
                 K M+ A   L+ +  R   L P   +    +    K+G  T A   +D M    
Sbjct: 428 CLSKAGK-MEEASTYLLEIQGRG--LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 484

Query: 398 ITPSLPAVEAYYNG 411
           + P+ P      NG
Sbjct: 485 LMPNNPLYTVLING 498



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 61/137 (44%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ M+  GV+P    +  +I    K   L + F  RD++   G L    +++ LI+   
Sbjct: 790 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALC 849

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K ++  +A ++ +EM +  +KP+      L+ +   AG++D    +   + + G   D  
Sbjct: 850 KREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTT 909

Query: 183 CYAGLITAHTNKIPRAD 199
               L+  + N     D
Sbjct: 910 TLIDLVNGNLNDTDSED 926



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +   L   +R    +  +++M   G++P  +   +LI G M+   + +    +
Sbjct: 208 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 267

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D M + G   ++  YN LI    K    ++A  I + M     KPN +T+ CLL
Sbjct: 268 DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF-CLL 320


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           ++ +++ M   GV P    +++LI    +GS  ++       MK+ GF+PD   YN L+ 
Sbjct: 88  IKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLD 147

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           V GK + + +A+ +  EM+     P+  TY  L++A A  G L     +   M   G  L
Sbjct: 148 VYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINL 207

Query: 180 DKFCYAGLITA 190
           D F Y  L++ 
Sbjct: 208 DVFTYTTLLSG 218



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 18/278 (6%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M   G  P RD +++LI    +            +M   G  PD++ YN +++   
Sbjct: 301 VFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALA 360

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    +Q+ +IF EMK    KPN  TY  LL+A A   ++  + A+  ++          
Sbjct: 361 RGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEIC--------- 411

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE----NEMMGVSKEELY 238
             +G+I  H   +       +K   LVE    +  ++  G + +    N M+ +      
Sbjct: 412 --SGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQM 469

Query: 239 NLPTAEYVH--RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVM 296
              T E ++     GF   L T   + +         ++ E L E+L K  K PD     
Sbjct: 470 FTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIK-PDTISYN 528

Query: 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
             I  Y  +G +    ++F +   S   P    Y T V
Sbjct: 529 TVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFV 566



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 145/376 (38%), Gaps = 28/376 (7%)

Query: 46  TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105
            +++ L  + +  +   + +D+  DG       + SLI   +   R ++      +M+  
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIR-IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           G  P +  YN +++V GK       I+ +FE MK   V P+  TY  L+  C      + 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
             A+ +DM + G   DK  Y  L+  +     R    A +++  +E +    S+ T    
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGK--SRRTKEAMEVLREMEVNGCSPSIVTY--- 177

Query: 225 AENEMM------GVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
             N ++      G+ KE  EL N          GG    + T   +        KD  AM
Sbjct: 178 --NSLISAYARDGLLKEAMELKNQMV------EGGINLDVFTYTTLLSGFVRAGKDESAM 229

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               EM     K P++      I+ + + G      KVFE+   S   P    + TL+  
Sbjct: 230 RVFAEMRAAGCK-PNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLL-- 286

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
           A+FG    GM      +     R  F+ P   +   L++A  + G +  A  I+  M   
Sbjct: 287 AVFG--QNGMDSEVSGVFKEMKRAGFV-PERDTYNTLISAYSRCGSFDQAMDIYKRMLEA 343

Query: 397 KITPSLPAVEAYYNGL 412
            ITP L    A    L
Sbjct: 344 GITPDLSTYNAVLAAL 359



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 149/385 (38%), Gaps = 47/385 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++      RR     +V  +M ++G  P+   ++SLI    +   L++    ++QM 
Sbjct: 142 YNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMV 201

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   DV  Y  L+S   +    + A+R+F EM+    KPN  T+  L+      G+  
Sbjct: 202 EGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFA 261

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            +  +  ++       +  C   ++T +T            ++ +  Q+ G  S E SG 
Sbjct: 262 EMMKVFEEIK------NSCCVPDIVTWNT------------LLAVFGQN-GMDS-EVSGV 301

Query: 224 NAENEMMG-VSKEELYNLPTAEYVHRRGGF--------------LSRLLTVYHVAFHACA 268
             E +  G V + + YN   + Y  R G F              ++  L+ Y+    A A
Sbjct: 302 FKEMKRAGFVPERDTYNTLISAY-SRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALA 360

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-A 327
                +  E +   +K  R  P+       +  Y +  +I     + E+ ICS    P A
Sbjct: 361 RGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEE-ICSGVIEPHA 419

Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            L  TLV         K   L +  +  +  +    SP + +   +++   +   +T  N
Sbjct: 420 VLLKTLVL-----VNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTN 474

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            I + M     TPSL    A YN L
Sbjct: 475 EILNFMNESGFTPSL----ATYNSL 495



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 51/106 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++   +    F    +V  +++  G++P    ++++I    +  R+++      +M+
Sbjct: 492 YNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMR 551

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +G +PDV  YN  ++        + AI +   M K+  KPN  TY
Sbjct: 552 ESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTY 597



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 4/171 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+ ++ + S  N +++    ++ F    ++ + M   G  P+   ++SL+    +  
Sbjct: 444 ELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSE 503

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
             + +     ++ A G  PD   YN +I     C+N    +A RIF EM++  + P+  T
Sbjct: 504 NFERSEEVLKEILAKGIKPDTISYNTVIF--AYCRNGRMKEASRIFSEMRESGLVPDVIT 561

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
           Y   + + AA    +    +VR M   G   ++  Y  ++  +     R D
Sbjct: 562 YNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDD 612


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRF--FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           R  + ++   Y+ ++ SLT   +    +L+ +Y ++  D ++    L + +IVG  K   
Sbjct: 212 RDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGD 271

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           +     F   ++ NG  P  A    +I+  G    +++A  IFEE+K+  + P  + Y  
Sbjct: 272 VNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNA 331

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           LL      G L    +IV +M  +G   D+  Y+ LI A+ N
Sbjct: 332 LLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYAN 373



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 3/184 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R  ++ +   Y+ ++ +  +  R+   R V  +M   GV+P   +F  ++       
Sbjct: 351 EMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRG 410

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + Q +F    +M+ +G  PD   YN +I   GKC   D A+  F+ M+   V+P+  T+ 
Sbjct: 411 KWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWN 470

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++    +G  +    +   M  +G       Y  +I +   +  R +D  T + ++  
Sbjct: 471 TLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQ-ERWEDVKTLLGKM-- 527

Query: 211 QSKG 214
           QS+G
Sbjct: 528 QSQG 531



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFF 98
           N   Y T+V       RF    +  + M   G++P+  ++++LI     +G   Q    F
Sbjct: 535 NVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAF 594

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R  M+A+G  P V V N LI+  G+ +   +A  + + MK+ ++KP+  TY  L+ A   
Sbjct: 595 R-VMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIR 653

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + D V A+  +MT +G   D+   A L +A
Sbjct: 654 VEKFDKVPAVYEEMTLSGCTPDRKARAMLRSA 685



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 68/142 (47%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V+T+L +  R      +++++   G+ P    +++L+ G +K   L+D      +M+ +G
Sbjct: 297 VITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSG 356

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
           F PD   Y+ LI         + A  + +EM+   V+PN   +  +L +    G+    +
Sbjct: 357 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSF 416

Query: 167 AIVRDMTAAGAGLDKFCYAGLI 188
            ++R+M  +G   D+  Y  +I
Sbjct: 417 QVLREMRNSGVSPDRHFYNVMI 438



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 60/125 (48%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +G+ P      ++I       R ++     +++K  G +P    YN L+    K  +   
Sbjct: 285 NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKD 344

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A  I  EM++    P+  TY  L++A A AG+ +    ++++M A+G   + + ++ ++ 
Sbjct: 345 AESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILA 404

Query: 190 AHTNK 194
           ++ ++
Sbjct: 405 SYRDR 409


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNTV+ +L  S+     +   +D M  D V P+   +  LI G  K +R++      ++M
Sbjct: 376 YNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEM 435

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI+  GK K  + A  +F+E+K+     + + Y  ++      G+L
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                +  +M   G+G D + Y  L++ 
Sbjct: 496 SEAVDLFNEMKNQGSGPDVYAYNALMSG 523



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 17  ALGRRFFVTSAGAEEYAR--RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQ 73
           ALGR   V+ A +  Y    R     +S YN+V+  L  + +   + +VY +M  +G   
Sbjct: 171 ALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCF 230

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    + +LI    K  R        D+MK N   P   +Y  L+ +  K    ++A+ +
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDL 290

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           FEEMK+    P   TY  L+     AG++D  Y   +DM   G   D
Sbjct: 291 FEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD 337



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++++M   G  PT   +  LI G  K  R+ + + F   M  +G  PDV   N L+++ 
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIVRDMTAAGAGLD 180
           GK    ++   +F EM  +   P   +Y  ++ A   +   +  V +    M A      
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408

Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSKEE 236
           +F Y+ LI  +  TN++ +A       + L+E+   KG+     +  +  N +    + E
Sbjct: 409 EFTYSILIDGYCKTNRVEKA-------LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
             +    E     G   SR+  V    F  C +L   +A++   EM K     PDVY
Sbjct: 462 AADELFKELKENFGNVSSRVYAVMIKHFGKCGKLS--EAVDLFNEM-KNQGSGPDVY 515



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 34  RRNYANNASE-YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + N+ N +S  Y  ++       +     D++++M   G  P    +++L+ G +K   +
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            +      +M+ NG   D+  +N +++   +     +AI +FE +K   +KP+G TY  L
Sbjct: 531 NEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTL 590

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           L   A AG  +    ++R+M   G   D   Y+ ++ A  N     DD ++
Sbjct: 591 LGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSS 641



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 10/265 (3%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG-FLPDVAVYNYLISVCGKCKNSDQAI 131
           +PT   ++S+I+  M+  + +       +M   G   PD   Y+ LIS   K   +D AI
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           R+F+EMK   ++P  + Y  LL      G+++    +  +M  AG     + Y  LI   
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKG- 312

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRG 250
             K  R D+      +++    G +      NN  N +  V + EEL N+ +   + R  
Sbjct: 313 LGKAGRVDEAYGFYKDMLRD--GLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
             +    TV    F + A + +V    +  + +K D  SP  +     I  Y  +  ++ 
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVS---SWFDKMKADSVSPSEFTYSILIDGYCKTNRVEK 427

Query: 311 GHKVFEDYICSEKFPPA-ELYATLV 334
              + E+ +  + FPP    Y +L+
Sbjct: 428 ALLLLEE-MDEKGFPPCPAAYCSLI 451



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 1/162 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R   +     Y  ++  L    R       Y DM+ DG+ P     ++L+    K 
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQT 148
            R+++      +M      P V  YN +I    + K +  +    F++MK   V P+  T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  L++      +++    ++ +M   G       Y  LI A
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 453


>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 731

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L     F L   VY+D   DG+      F  L+ G  K  R+++      +M+
Sbjct: 235 YNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMR 294

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            N   PDV  Y  +I       N D ++R+++EMK+ E+KP+   Y  L+      G+++
Sbjct: 295 ENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIKPDVMAYGTLVVGLCKDGRIE 354

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
             Y +  +M      +D+  Y  LI
Sbjct: 355 RGYELFMEMKGKQILIDREIYRVLI 379



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ Y ++ + YN     L     F     + + M   G  P+   F  LI       R  
Sbjct: 155 QKGYKHDFAAYNAFAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRRGL 214

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
             ++  ++MK  GF P V +YN ++    K    D A+ ++E+ K+  +     T++ L+
Sbjct: 215 RVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILV 274

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                AG+++ +  I++ M       D F Y  +I
Sbjct: 275 KGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMI 309


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            +E   R    +A  YN V++SL          D + D++    +PT   +  LI G  K 
Sbjct: 847  KEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKV 906

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             RL++     ++M   G  P+ A++N LI+  GK  +++ A ++F+ M    ++P+ ++Y
Sbjct: 907  GRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSY 966

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              L++    AG++D       ++ + G   D   Y  +I  
Sbjct: 967  TILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIING 1007



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 130/297 (43%), Gaps = 14/297 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQM 102
           Y  ++ +L +  +    ++++  M  +G +P + ++ +L+        L DTF  F  QM
Sbjct: 300 YTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDL-DTFKEFWSQM 358

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +A+G++PDV  +  L+ V  K ++ D+A   F+ M+K  + PN  TY  L+     AG++
Sbjct: 359 EADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRI 418

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +    ++  M + G     + Y   I    +   ++ +T  K +E  E+ K    V    
Sbjct: 419 EDALKLLGTMESVGVQPTAYTYNIFI----DYFGKSGETG-KAVETFEKMKAKGIVP--- 470

Query: 223 NNAENEMMGVSKEELYNLPTAEYVH---RRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           N         S  E+  L  A+ +    R  G     +T Y++     +++  V     L
Sbjct: 471 NIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVT-YNMMMKCYSKVGQVDEAVNL 529

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           L  + ++   PDV +V   I     +G +D   ++F+     +  P    Y TL+ G
Sbjct: 530 LSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 119/309 (38%), Gaps = 20/309 (6%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  +   +  +V  L   R F      +D M   G+ P    +++LI G ++  R++D  
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M++ G  P    YN  I   GK   + +A+  FE+MK   + PN       L + 
Sbjct: 423 KLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSL 482

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           A  G+L     +   +   G   D   Y  ++  ++ K+ + D+    + E++       
Sbjct: 483 AEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYS-KVGQVDEAVNLLSEMIR------ 535

Query: 217 SVETSGNNAENEMMGVSK--EELYNLPTAE-----YVHRRGGFLSRLLTVYHVAFHACAE 269
                 N  E +++ V+   + LY     +     +   +   LS  +  Y+       +
Sbjct: 536 ------NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
              VQ    L E + + + SP+       + C+  + +++   K+F      +  P    
Sbjct: 590 EGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 330 YATLVEGAM 338
           Y T++ G +
Sbjct: 650 YNTVIYGLI 658



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +  +  NA  YN ++  L          +VY  M+ +G++P+   + +L+V   K    +
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +M+  G  P+V  +   I V G+    D+A  IF  M      P+  TY  L+
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLI 304

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A   AGQL+    +   M A G   D+  Y  L+
Sbjct: 305 DALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 65/130 (50%)

Query: 63   VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
            ++  M+ +G++P    +  L+       R+ +  ++ +++K+ G  PD   YN +I+  G
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 123  KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
            K +  ++A+ ++ EM+   + P+  TY  L+     AG ++    +  ++  AG   D F
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVF 1069

Query: 183  CYAGLITAHT 192
             Y  LI  ++
Sbjct: 1070 TYNALIRGYS 1079



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           L H LI     G  L+    +R +M + G  P +  Y+ L+   GK ++S+  + + +EM
Sbjct: 198 LIHLLIQSGFCGEALE---VYR-RMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           +   ++PN  T+   +     AG++D  Y I R M   G G D   Y  LI A  N
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCN 309



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + YN ++  L          D++ DM   G  P    F+ L+    K  ++ + F    +
Sbjct: 789 ASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKE 848

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M +    PD   YN +IS   K  N D+A+  F ++   + +P  +TY  L++  A  G+
Sbjct: 849 MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR 908

Query: 162 LDPVYAIVRDMTAAGA 177
           L+    +  +M+  G 
Sbjct: 909 LEEAMRLFEEMSDYGC 924



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%)

Query: 64   YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
            ++++   G+ P    ++ +I G  K  R+++     ++M+  G +PD+  YN L+   G 
Sbjct: 986  FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGL 1045

Query: 124  CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
                +QA R++EE++   ++P+  TY  L+   + +   +  Y + ++M   G   +   
Sbjct: 1046 AGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105

Query: 184  YAGL 187
            YA L
Sbjct: 1106 YAQL 1109



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 112/296 (37%), Gaps = 6/296 (2%)

Query: 38   ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
            A +A  +N ++       +   L ++Y +M+    +P    ++ +I    K + L     
Sbjct: 820  APDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALD 879

Query: 98   FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            F   + ++ F P    Y  LI    K    ++A+R+FEEM  Y  KPN   +  L+N   
Sbjct: 880  FFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYG 939

Query: 158  AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
              G  +    + + M   G   D   Y  L+        R D+      EL  +S G   
Sbjct: 940  KIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLC-LAGRVDEALYYFNEL--KSTGLDP 996

Query: 218  VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
               + N   N   G+ K +      A Y   R   +   L  Y+           V+  +
Sbjct: 997  DFIAYNRIIN---GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAK 1053

Query: 278  TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             + E L+     PDV+     IR Y  S + ++ + V+++ +     P    YA L
Sbjct: 1054 RMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 129/344 (37%), Gaps = 59/344 (17%)

Query: 76   RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
            R  +  L+ GT+  + +     F +++  NG   + +    L+ V  K K    A +IF+
Sbjct: 717  RSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFD 776

Query: 136  EM-KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +  KK  + P   +Y CL+         +  + + +DM   G   D F +  L+  H   
Sbjct: 777  KFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGK- 835

Query: 195  IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
                   + KI EL E  K                              E + RR     
Sbjct: 836  -------SGKITELFELYK------------------------------EMISRR---CK 855

Query: 255  RLLTVYHVAFHACAELKDV-QAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGH 312
                 Y++   + A+  ++ +A++   +++  D R +P  Y  +  I      G ++   
Sbjct: 856  PDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL--IDGLAKVGRLEEAM 913

Query: 313  KVFE---DYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG 368
            ++FE   DY C    P   ++  L+ G    G T    QL +  +VN   R     P + 
Sbjct: 914  RLFEEMSDYGCK---PNCAIFNILINGYGKIGDTETACQLFK-RMVNEGIR-----PDLK 964

Query: 369  SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
            S  +LV     +G    A Y ++ +++  + P   A     NGL
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 1/148 (0%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTM 87
           AEE          S    +V  L   +R      ++D      G+ PT   ++ LI   +
Sbjct: 740 AEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELL 799

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           +    +  +     MK  G  PD   +N L++V GK     +   +++EM     KP+  
Sbjct: 800 EVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAI 859

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAA 175
           TY  ++++ A +  LD       D+ ++
Sbjct: 860 TYNIVISSLAKSNNLDKALDFFYDLVSS 887



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++ L  + R     ++++ M+     P    F++L+    K   ++       +M 
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT 639

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  YN +I    K    + A   F ++KK  + P+  T   LL      GQ+ 
Sbjct: 640 VMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK-SMHPDHVTICTLLPGLVKCGQIG 698

Query: 164 PVYAIVRD 171
              +I RD
Sbjct: 699 DAISIARD 706



 Score = 38.5 bits (88), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 49/111 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L   +R      +Y++M   G+ P    ++SL++       ++      ++++
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              G  PDV  YN LI      +N + A  +++ M      PN  TY  L N
Sbjct: 1061 LAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+  L   +R    ++++ +M     +P    F +LI G  K   +++ F   ++M+
Sbjct: 167 YNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEME 226

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G   DV VY+ LIS  G C   D  +   +F EM +  V PN  TY CL+NA     +
Sbjct: 227 KMGLEGDVFVYSALIS--GFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQK 284

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
                 ++  MT      D   Y  L     +K  RA D A K+++L+
Sbjct: 285 WKEAAQMLDTMTGCKVRPDVVAYTVLADG-LSKNGRASD-AIKVLDLM 330



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MK N  +PD   YN +I+   K K   +A  +F+EMK  E KPN  T+  L++     G 
Sbjct: 155 MKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGD 214

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           ++  + ++ +M   G   D F Y+ LI+   +K
Sbjct: 215 VEEGFGLLEEMEKMGLEGDVFVYSALISGFCSK 247



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 65/159 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   Y+ +++   S+      ++++++M+   V P    +  L+    K 
Sbjct: 223 EEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKK 282

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + ++     D M      PDV  Y  L     K   +  AI++ + M K   +PN  TY
Sbjct: 283 QKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTY 342

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             ++N     G++D    I+  M   G   D   Y+ L+
Sbjct: 343 NAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+N   N   Y+ ++ +L  ++++     + D M    V+P    +  L  G  K  
Sbjct: 259 EMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNG 318

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           R  D     D M   G  P+   YN +I+  G CK    D A+ I E M K   KP+  T
Sbjct: 319 RASDAIKVLDLMVKRGEEPNNVTYNAIIN--GLCKEGRVDDALGILETMAKKGKKPDVVT 376

Query: 149 YVCLLNACAAAGQLD 163
           Y  L+      G++D
Sbjct: 377 YSTLVKGLCGVGKID 391



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 74/172 (43%), Gaps = 5/172 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ Y  ++  L   +   + + +++     G +PT   +++L+    + S ++      
Sbjct: 480 NAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLF 539

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+     PDV  +N +I    K  + + A  +  EM    + P+  T+  L+N     
Sbjct: 540 QEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKL 599

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           GQLD   ++   M + G   D   +  L+  ++ K         K++ +++Q
Sbjct: 600 GQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLK-----GKTEKVVSMLQQ 646



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 60/131 (45%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
             R + +N   YN ++    S  +     +++ D +  G+ P    +  LI G  K   L
Sbjct: 438 VERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQML 497

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                  ++ +A+G  P V+ YN L++   +  + +QA  +F+EM+     P+  ++  +
Sbjct: 498 SIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNII 557

Query: 153 LNACAAAGQLD 163
           ++    AG ++
Sbjct: 558 IDGTLKAGDVE 568



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 66/351 (18%), Positives = 134/351 (38%), Gaps = 54/351 (15%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC 121
           V D M+  G +P    ++++I G  K  R+ D     + M   G  PDV  Y+ L+  +C
Sbjct: 326 VLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLC 385

Query: 122 GKCKNSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G  K  D+A+ +   +  K++ +KP+   +  ++       +L     +   M   G   
Sbjct: 386 GVGK-IDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPS 444

Query: 180 DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM--GVSKEEL 237
           +   Y  LI  +         +A K+ + +E  K       S N A   ++  G+ K ++
Sbjct: 445 NIVTYNILIDGYL--------SAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQM 496

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY---I 294
            ++    +  +R       ++ Y+    +      V+    L + ++     PDV    I
Sbjct: 497 LSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNI 556

Query: 295 VMQN--------------------------------IRCYLHSGDIDNGHKVFEDYICSE 322
           ++                                  I  +L  G +D    ++E  +   
Sbjct: 557 IIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCG 616

Query: 323 KFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLL 372
             P A L+ +L++G ++ G T K + + Q     M  +++ L  ++ S +L
Sbjct: 617 HVPDAVLFDSLLKGYSLKGKTEKVVSMLQ----QMADKDVVLDSKLTSTIL 663



 Score = 41.2 bits (95), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 62/140 (44%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
            SEYNT++ SL  +      R+++ +M      P    F+ +I GT+K   ++       
Sbjct: 516 VSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLL 575

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M     +PD   ++ LI+   K    D+A  ++E M      P+   +  LL   +  G
Sbjct: 576 EMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKG 635

Query: 161 QLDPVYAIVRDMTAAGAGLD 180
           + + V ++++ M      LD
Sbjct: 636 KTEKVVSMLQQMADKDVVLD 655


>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
 gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
 gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
          Length = 511

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 118/275 (42%), Gaps = 11/275 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++T L   ++     +++  M+ +G  P  + + +L+    +  R    F   +QMK
Sbjct: 163 YVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAYSRSGRFDRAFSLLEQMK 222

Query: 104 AN-GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           A  G  PDV  Y+ LI  C    + ++   + E+M +  ++PN  TY  L++A   AG+ 
Sbjct: 223 ATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRF 282

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
             + + + +M      L + C   + T   N   RA   + +I  +    + + +   S 
Sbjct: 283 AEMESTLLEM------LTENCKPDVWT--MNSTLRAFGGSGQIETMESCYEKFQASGISP 334

Query: 223 NNAENEMM--GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
           N     ++     K ++Y    A   + +  + S  +  Y+V   A     D++ ME + 
Sbjct: 335 NIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIF 394

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
            ++K +R  P+   +   +R Y  +GD+     V 
Sbjct: 395 RLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVL 429



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 131/337 (38%), Gaps = 76/337 (22%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
            H  I      S L+     RDQ+    + P V +Y  LI++ GKCK  ++A  +F+ M 
Sbjct: 131 LHERITALRWDSALKVFDLMRDQV---WYRPYVGIYVKLITMLGKCKQPERAHELFQAMV 187

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYAGLITAHTNKIPR 197
                PN ++Y  L++A + +G+ D  ++++  M A  G   D   Y+ LI +  +    
Sbjct: 188 DEGCAPNLESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHA--- 244

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLS 254
                                                   Y+    +Y+     R G   
Sbjct: 245 ----------------------------------------YDFERVKYLMEDMARAGIRP 264

Query: 255 RLLTVYHVAFHACAELKDVQAME-TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
            ++T Y+    A  +      ME TLLEML ++ K PDV+ +   +R +  SG I+    
Sbjct: 265 NVVT-YNTLIDAYGKAGRFAEMESTLLEMLTENCK-PDVWTMNSTLRAFGGSGQIETMES 322

Query: 314 VFEDYICSEKFPPAELYATLVE----GAMFGYTPKGMQLAQD-----TLVNMNSRNIFLS 364
            +E +  S   P  + Y  L++      M+      M+  Q      T+V  N       
Sbjct: 323 CYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYN------- 375

Query: 365 PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS 401
                  +++ A  ++G      YI+ LM++ +I P+
Sbjct: 376 -------VVIDAFGRAGDLEQMEYIFRLMKSERIKPN 405



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ AR     N   YNT++ +     RF  +     +M+ +  +P     +S +      
Sbjct: 255 EDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGS 314

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK------------------------ 125
            +++      ++ +A+G  P++  YN L+   GK K                        
Sbjct: 315 GQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTY 374

Query: 126 -----------NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
                      + +Q   IF  MK   +KPN  T   L+ A   AG +  +  ++R +  
Sbjct: 375 NVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIVEN 434

Query: 175 AGAGLDKFCYAGLITA 190
           +   LD   +  L+ A
Sbjct: 435 SDITLDIVFFNCLVDA 450


>gi|298712181|emb|CBJ33053.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 845

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVC 121
           V DD+   G++P   ++ + I     G +L+        M+ +  +P DVA +N  I+ C
Sbjct: 204 VLDDLRAAGIKPDSFVYRAAITACGNGDKLEMALQLLRDMREDPDVPVDVASFNAAITAC 263

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+CK   +AI +  E+    + P   +Y   + ACA   Q D    ++R++   G   D 
Sbjct: 264 GRCKQWQRAISLLREITTEGLAPGLVSYGAAITACATCNQGDAAVELLRELPIVGITPDS 323

Query: 182 FCYAGLITA 190
             Y  +I+A
Sbjct: 324 MVYTSVISA 332



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 10/157 (6%)

Query: 40  NASEYNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           + + +N  +T+       QR   LLR++      +G+ P    + + I      ++    
Sbjct: 252 DVASFNAAITACGRCKQWQRAISLLREI----TTEGLAPGLVSYGAAITACATCNQGDAA 307

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV--KPNGQTYVCLL 153
                ++   G  PD  VY  +IS CG+    ++A+ +F E+    V  +P+  +Y  ++
Sbjct: 308 VELLRELPIVGITPDSMVYTSVISACGRAGQWERAVDLFREISMLRVGFRPDAVSYSAVI 367

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            A    GQ +     +R+M  AG   D  C+   +TA
Sbjct: 368 TALGEGGQWEEALRFLREMPQAGVKPDVVCFNSAVTA 404



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 5/151 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQ 101
           Y   +T+  +  +  +   +  DM  D   P  D+  F++ I    +  + Q       +
Sbjct: 220 YRAAITACGNGDKLEMALQLLRDMREDPDVPV-DVASFNAAITACGRCKQWQRAISLLRE 278

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   G  P +  Y   I+ C  C   D A+ +  E+    + P+   Y  +++AC  AGQ
Sbjct: 279 ITTEGLAPGLVSYGAAITACATCNQGDAAVELLRELPIVGITPDSMVYTSVISACGRAGQ 338

Query: 162 LDPVYAIVRDMTAAGAGL--DKFCYAGLITA 190
            +    + R+++    G   D   Y+ +ITA
Sbjct: 339 WERAVDLFREISMLRVGFRPDAVSYSAVITA 369



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRD-Q 101
           Y   +T+  +  +     ++  ++ + G+ P   ++ S+I    +  + +     FR+  
Sbjct: 291 YGAAITACATCNQGDAAVELLRELPIVGITPDSMVYTSVISACGRAGQWERAVDLFREIS 350

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M   GF PD   Y+ +I+  G+    ++A+R   EM +  VKP+   +   + ACA +G+
Sbjct: 351 MLRVGFRPDAVSYSAVITALGEGGQWEEALRFLREMPQAGVKPDVVCFNSAVTACAKSGR 410

Query: 162 LDPVYAIVRDM 172
            +    ++R+M
Sbjct: 411 WEEAGGLLREM 421



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           PDV  Y   I+ CG+     +A+ +  EM    + P+G +Y   + AC  +GQ +   ++
Sbjct: 636 PDVTTYTAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNAAMTACGRSGQWELSLSL 695

Query: 169 VRDMTAAGAGLDKFCYAGLITA 190
           +R+M   G   D   +  +++A
Sbjct: 696 LREMAKLGVSPDVVSFNSVMSA 717



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 41/102 (40%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    F++ +         ++       M A    P+   Y   I+ CG     +QA+ 
Sbjct: 517 RPNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIAPNATSYTSAIAACGFAGEWEQALN 576

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           +   +KK E K     Y   + AC  AG+ +    I+R+M A
Sbjct: 577 LLRALKKGEGKLGVGAYNAAIKACGEAGRFEEAVGILREMEA 618



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 94/255 (36%), Gaps = 22/255 (8%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANG--------FLPDVAVYNYLISVCGKCKNSDQ 129
           ++ + I    K  R ++     D+M A            P+V   + +I+ CG+C     
Sbjct: 101 MYTACITTMSKCKRWREALEVLDRMMAAAQEEGGGGELTPNVNTMSAVITACGRCGQGKA 160

Query: 130 AIRIFEEMKKYE-----VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           A+ + E MK        +KP+       ++A   AG+ +    ++ D+ AAG   D F Y
Sbjct: 161 ALEVLERMKTIGDEAGGLKPDLHCLSAAIDAAGGAGEWEAALRVLDDLRAAGIKPDSFVY 220

Query: 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSS--VETSGNNAENEMMGVSKEELYNLPT 242
              ITA  N      D     ++L+   +      V+ +  NA     G  K+    +  
Sbjct: 221 RAAITACGN-----GDKLEMALQLLRDMREDPDVPVDVASFNAAITACGRCKQWQRAISL 275

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
              +   G  L+  L  Y  A  ACA      A   LL  L     +PD  +    I   
Sbjct: 276 LREITTEG--LAPGLVSYGAAITACATCNQGDAAVELLRELPIVGITPDSMVYTSVISAC 333

Query: 303 LHSGDIDNGHKVFED 317
             +G  +    +F +
Sbjct: 334 GRAGQWERAVDLFRE 348



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 64/184 (34%), Gaps = 27/184 (14%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF        Y R N A     +N  + +  S   +     +   M+ + + P    + 
Sbjct: 512 RFF--------YCRPNVAT----FNAAMQAAGSAGEWREALTLLRGMLAEKIAPNATSYT 559

Query: 81  SLIVGT-MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           S I      G   Q     R   K  G L  V  YN  I  CG+    ++A+ I  EM+ 
Sbjct: 560 SAIAACGFAGEWEQALNLLRALKKGEGKL-GVGAYNAAIKACGEAGRFEEAVGILREMEA 618

Query: 140 -------------YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
                           +P+  TY   + AC  AG+      ++R+M   G       Y  
Sbjct: 619 DVGLEIPSSSTTRTTSRPDVTTYTAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNA 678

Query: 187 LITA 190
            +TA
Sbjct: 679 AMTA 682



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDG--------VQPTRDLFHSLIVGTMKGSRLQDT 95
           Y   +T+++  +R+    +V D MM           + P  +   ++I    +  + +  
Sbjct: 102 YTACITTMSKCKRWREALEVLDRMMAAAQEEGGGGELTPNVNTMSAVITACGRCGQGKAA 161

Query: 96  FFFRDQMK-----ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
               ++MK     A G  PD+   +  I   G     + A+R+ ++++   +KP+   Y 
Sbjct: 162 LEVLERMKTIGDEAGGLKPDLHCLSAAIDAAGGAGEWEAALRVLDDLRAAGIKPDSFVYR 221

Query: 151 CLLNACAAAGQLDPVYAIVRDM 172
             + AC    +L+    ++RDM
Sbjct: 222 AAITACGNGDKLEMALQLLRDM 243


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNTV+ +L  S+     +   +D M  D V P+   +  LI G  K +R++      ++M
Sbjct: 376 YNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEM 435

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI+  GK K  + A  +F+E+K+     + + Y  ++      G+L
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                +  +M   G+G D + Y  L++ 
Sbjct: 496 SEAVDLFNEMKNQGSGPDVYAYNALMSG 523



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++++M   G  PT   +  LI G  K  R+ + + F   M  +G  PDV   N L+++ 
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIVRDMTAAGAGLD 180
           GK    ++   +F EM  +   P   +Y  ++ A   +   +  V +    M A      
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408

Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSKEE 236
           +F Y+ LI  +  TN++ +A       + L+E+   KG+     +  +  N +    + E
Sbjct: 409 EFTYSILIDGYCKTNRVEKA-------LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
             N    E     G   SR+  V    F  C +L   +A++   EM K     PDVY
Sbjct: 462 AANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS--EAVDLFNEM-KNQGSGPDVY 515



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 17  ALGRRFFVTSAGAEEYAR--RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQ 73
           ALGR   V+ A +  Y    R     +S YN+V+  L  + +   + +VY +M  +G   
Sbjct: 171 ALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCF 230

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    + +LI    K  R        D+MK N   P   +Y  L+ +  K    ++A+ +
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDL 290

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           FEEMK+    P   TY  L+     AG++D  Y   +DM   G   D
Sbjct: 291 FEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD 337



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 34  RRNYANNASE-YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + N+ N +S  Y  ++       +     D++++M   G  P    +++L+ G +K   +
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            +      +M+ NG   D+  +N +++   +     +AI +FE +K   +KP+G TY  L
Sbjct: 531 NEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTL 590

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           L   A AG  +    ++R+M   G   D   Y+ ++ A  N     DD ++
Sbjct: 591 LGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSS 641



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 10/265 (3%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG-FLPDVAVYNYLISVCGKCKNSDQAI 131
           +PT   ++S+I+  M+  + +       +M   G   PD   Y+ LIS   K   +D AI
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           R+F+EMK   ++P  + Y  LL      G+++    +  +M  AG     + Y  LI   
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKG- 312

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRG 250
             K  R D+      +++    G +      NN  N +  V + EEL N+ +   + R  
Sbjct: 313 LGKAGRVDEAYGFYKDMLRD--GLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
             +    TV    F + A + +V    +  + +K D  SP  +     I  Y  +  ++ 
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVS---SWFDKMKADSVSPSEFTYSILIDGYCKTNRVEK 427

Query: 311 GHKVFEDYICSEKFPPA-ELYATLV 334
              + E+ +  + FPP    Y +L+
Sbjct: 428 ALLLLEE-MDEKGFPPCPAAYCSLI 451



 Score = 38.5 bits (88), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 1/162 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R   +     Y  ++  L    R       Y DM+ DG+ P     ++L+    K 
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQT 148
            R+++      +M      P V  YN +I    + K +  +    F++MK   V P+  T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  L++      +++    ++ +M   G       Y  LI A
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 453


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 121/303 (39%), Gaps = 29/303 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +M   G++     +  LI G +      + F   + M  +G  PD A+YN L+    
Sbjct: 450 VSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFC 509

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  N D+AIRIFE MKK  ++P+ +T+  ++   A AG +      +  M  +G      
Sbjct: 510 KMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVM 569

Query: 183 CYAGLITA--HTNKIPRADDTATKI-IELVEQSKGWSSVETSGNNAENEMMGVS------ 233
            Y  LI      +++ RA     K+ I  +  ++   ++   G  A  ++          
Sbjct: 570 TYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKI 629

Query: 234 -----KEELY-------------NLPTAEYVHRRGGF--LSRLLTVYHVAFHACAELKDV 273
                K ++Y              + +A  V R   F  + R   +Y++     A   DV
Sbjct: 630 KESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 689

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
                L++ +K+D   P+++     I     +GD+     V ++       P  + + TL
Sbjct: 690 WEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTL 749

Query: 334 VEG 336
           ++G
Sbjct: 750 IKG 752



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 140/347 (40%), Gaps = 13/347 (3%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M  DG+    D++HS++ G       +      +++K  GF P +  Y  LI++  K  
Sbjct: 383 EMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIG 442

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+ + +EM+ + +K N +TY  L+N           ++I  DM  +G   D+  Y 
Sbjct: 443 KVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYN 502

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
            L+ A   K+    D A +I E +++ +   S  T     E     V+ +    L T + 
Sbjct: 503 LLVEAFC-KMGNM-DRAIRIFERMKKERMQPSNRTFRPIIEG--FAVAGDMKRALDTLDL 558

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
           + RR G    ++T Y+   H       V+   ++L+ +     +P+ +     +R Y  S
Sbjct: 559 M-RRSGCAPTVMT-YNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAAS 616

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQLAQDTLVNMNSRNIFLS 364
           GDI    + F     S       +Y TL+      G     + + ++       RN F+ 
Sbjct: 617 GDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIY 676

Query: 365 PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
                  +L+    + G    A  +   M+   I P++    +Y N 
Sbjct: 677 N------ILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINA 717



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 138/341 (40%), Gaps = 33/341 (9%)

Query: 34  RRNYANNASEYNTVVTSLT-----SQRRFFLL-------------RDVYDDMMLDGVQPT 75
           RR   +   ++  VV++       S+R F L+             R  +++M   G++P 
Sbjct: 228 RRVLESRPEDWQAVVSAFERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPN 287

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
             +F SL+        ++      ++MK+ G    V  Y+ LI+  GK  +++ A ++F+
Sbjct: 288 AFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFK 347

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
           E K      NG  Y  +++A   +G +D    +VR+M   G       Y  ++  +T  +
Sbjct: 348 EAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYT--V 405

Query: 196 PRADDTATKIIELVEQSKGWSSVETSGN--NAENEMMGVSKEELYNLPTAEYVHRRGGFL 253
            + +     + E +++     S+ + G   N   ++  V K     L  ++ +   G  +
Sbjct: 406 AQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKA----LAVSKEMESHG--I 459

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
                 Y +  +    L D     ++ E + K    PD  I    +  +   G++D   +
Sbjct: 460 KHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIR 519

Query: 314 VFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTL 353
           +FE        P    +  ++EG A+ G     M+ A DTL
Sbjct: 520 IFERMKKERMQPSNRTFRPIIEGFAVAG----DMKRALDTL 556



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 53/129 (41%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A   E + +    N   YN ++     +   +   D+   M  DG+ P    F S I   
Sbjct: 659 AVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINAC 718

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q       +M   G  P+V  +  LI    K    D+A++ FEEMK   +KP+ 
Sbjct: 719 CKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDE 778

Query: 147 QTYVCLLNA 155
             Y CL+ +
Sbjct: 779 AAYHCLVTS 787



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++ +     R      V  +M    +     +++ LI G  +   + +      QMK
Sbjct: 641 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMK 700

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P++  +   I+ C K  +  +A  + +EM    +KPN +T+  L+   A     D
Sbjct: 701 EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPD 760

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
                  +M +AG   D+  Y  L+T+
Sbjct: 761 RALKCFEEMKSAGLKPDEAAYHCLVTS 787


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 118/277 (42%), Gaps = 27/277 (9%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N +++SL       +   V+D M   GV P   LF +++     G R+ D      +M+ 
Sbjct: 166 NFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEK 225

Query: 105 NGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            G  P+V  YN +I   G CKN   D+A +  E+M+K  VKP+  TY  L+N      + 
Sbjct: 226 VGVAPNVVTYNNIIH--GLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERF 283

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI-IELVEQSKGWSSVETS 221
           D    I+++M+  G   +   Y  LI  +     R  + +T + I     S G S    +
Sbjct: 284 DEANCILKEMSDRGYAPNNVVYNTLIDGYC----RIGNISTALQIRDDMISNGISPNSVT 339

Query: 222 GNN-----AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
            N+      ++  M  ++  L  + T   V  +G F S       V    C + +   A+
Sbjct: 340 CNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTS-------VIHRLCLKCRFDSAL 392

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
             ++EML ++ K  D  + +      L SG   NG +
Sbjct: 393 LFIMEMLLRNFKPNDGLLTL------LVSGLCQNGKQ 423



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 160/402 (39%), Gaps = 31/402 (7%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
            RF   +   +E + R YA N   YNT++              + DDM+ +G+ P     
Sbjct: 281 ERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTC 340

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMK 138
           +SLI G  K ++++      ++M   G + +   +  +I  +C KC+  D A+    EM 
Sbjct: 341 NSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCR-FDSALLFIMEML 399

Query: 139 KYEVKPNGQTYVCLLNACAAAGQ----LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               KPN      L++     G+    ++  Y ++    AA          GL  A +  
Sbjct: 400 LRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSK- 458

Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK----EELYNLPTAEYVHRRG 250
               ++ A  + E++E+     S+  +       ++   K    EE + L   E + RRG
Sbjct: 459 ----EEAAKLLKEMLERGLVLDSISYN-----TLILACCKEGKVEEGFKL--KEEMVRRG 507

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
             +   +  Y++  H    +  ++    L    KK+   PD Y     I  Y  +  ++ 
Sbjct: 508 --IQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEE 565

Query: 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGS 369
           G K+F++ +  +    A +Y TL+      Y   G M+ A     +M SR I  +    S
Sbjct: 566 GEKLFQEMVTMKIEQNAVVYGTLIR----AYCENGNMREAFRLRDDMRSRGIPQTSATYS 621

Query: 370 DLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
              L+      G   +AN + D M+   ++P++    A   G
Sbjct: 622 S--LIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGG 661



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 60/129 (46%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++ +M+   ++    ++ +LI    +   +++ F  RD M++ G     A Y+ LI    
Sbjct: 569 LFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLS 628

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                D A ++ +EM+K  + PN   Y  L+      GQ+  V +I+++M+      +K 
Sbjct: 629 NIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKI 688

Query: 183 CYAGLITAH 191
            Y  +I  H
Sbjct: 689 TYTIMINGH 697



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 2/158 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++T+V +  +  R     +++  M   GV P    ++++I G  K  RL + F F+++M+
Sbjct: 200 FSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKME 259

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P +  Y  LI+   K +  D+A  I +EM      PN   Y  L++     G + 
Sbjct: 260 KERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNIS 319

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRAD 199
               I  DM + G   +      LI  +  +N++  A+
Sbjct: 320 TALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAE 357



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 125/329 (37%), Gaps = 31/329 (9%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   YN ++  L    R        + M  + V+P+   +  LI G +K  R  +   
Sbjct: 229 APNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANC 288

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M   G+ P+  VYN LI    +  N   A++I ++M    + PN  T   L+    
Sbjct: 289 ILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYC 348

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV----EQSK 213
            + Q++    ++ +M   G  +++  +  +I     K  R D     I+E++    + + 
Sbjct: 349 KSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKC-RFDSALLFIMEMLLRNFKPND 407

Query: 214 GWSSVETSG---NNAENEMMGV---------------SKEELYNLPTAEYVHRRGGFLSR 255
           G  ++  SG   N  ++E + +               S   ++ L  A         L  
Sbjct: 408 GLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKE 467

Query: 256 LL--------TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
           +L          Y+    AC +   V+    L E + +    PD+Y     +    + G 
Sbjct: 468 MLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGK 527

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEG 336
           I+    ++ +   +  FP A  Y  +++G
Sbjct: 528 IEEAGGLWHECKKNGNFPDAYTYGIMIDG 556



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 61/161 (37%), Gaps = 6/161 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E        NA  Y T++ +     + R  F LRD   DM   G+  T   + SLI G 
Sbjct: 571 QEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRD---DMRSRGIPQTSATYSSLIHGL 627

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
                +       D+M+  G  P+V  Y  LI    K     +   I +EM    V PN 
Sbjct: 628 SNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNK 687

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
            TY  ++N     G +     ++ +M   G   D   Y  L
Sbjct: 688 ITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNAL 728



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 116/306 (37%), Gaps = 6/306 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   RN+  N      +V+ L    +     +++  ++  G        ++LI G  +  
Sbjct: 397 EMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAG 456

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             ++      +M   G + D   YN LI  C K    ++  ++ EEM +  ++P+  TY 
Sbjct: 457 SKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYN 516

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            LL+     G+++    +  +    G   D + Y  +I  +  K  R ++      E+V 
Sbjct: 517 MLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYC-KANRVEEGEKLFQEMVT 575

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
                ++V   G          +  E + L   + +  RG  + +    Y    H  + +
Sbjct: 576 MKIEQNAV-VYGTLIRAYCENGNMREAFRL--RDDMRSRG--IPQTSATYSSLIHGLSNI 630

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             V +   LL+ ++K+  SP+V      I  Y   G +     + ++   +   P    Y
Sbjct: 631 GLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITY 690

Query: 331 ATLVEG 336
             ++ G
Sbjct: 691 TIMING 696



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 1/155 (0%)

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
           F ++ +++  +   G+ P+    + L+   +K + ++ ++   D M   G  PDV +++ 
Sbjct: 143 FGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFST 202

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +++        D AI +F +M+K  V PN  TY  +++     G+LD  +     M    
Sbjct: 203 MVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKER 262

Query: 177 AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
                  Y  LI     K+ R D+    + E+ ++
Sbjct: 263 VKPSLVTYGVLINGLV-KLERFDEANCILKEMSDR 296


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   Y+ ++ +     +F    ++ +DM  +GV+P    + +LI    K 
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE 347

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + QD F   + M+A G  P+V  YN ++    K    D+  R++E M K    P+  TY
Sbjct: 348 RKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTY 407

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             ++N  + AG LD    +   + ++  G D   Y+ +IT+
Sbjct: 408 SIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITS 448



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 17/210 (8%)

Query: 8   YRHHKSVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           +R H    G L R  RFF      EE AR+  +  A+ Y   + +L         R   +
Sbjct: 238 FRQH----GELDRVIRFF-----EEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVE 288

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           ++   GV P    +  LI    +  +   +    + M+ NG  PDV  Y+ LI+V  K +
Sbjct: 289 ELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKER 348

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
               A R+ E M+     PN  TY  +++    +G++D V+ +   M  +    D   Y+
Sbjct: 349 KFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYS 408

Query: 186 GLITAHTNKIPRAD--DTATKIIELVEQSK 213
            ++    N + +A   D+A K+ EL++ S+
Sbjct: 409 IIM----NGLSKAGMLDSAVKLFELIKSSR 434



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 124/323 (38%), Gaps = 37/323 (11%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+    +   N   Y  ++  L    +  L R+V+ +M  +G +P    + +LI    + 
Sbjct: 112 EKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRA 171

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             + +      + ++     DV     ++   G CK S  D A++  EEM++  V+PN  
Sbjct: 172 GEIDEALRVMIEQRSLELPTDVITCTTIVG--GLCKASRLDDALKFMEEMRQMGVRPNEV 229

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAG----------LDKFCYAGLITAHTNKIPR 197
           TY  L++     G+LD V     +  A   G          LD  C AG +         
Sbjct: 230 TYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYL--------- 280

Query: 198 ADDTATKIIELVEQSKGWSSVETSG----NNAENEMMGVSKEELYNLPTAEYVHRRGGFL 253
             D A K +E + QS     V T        A       S E L ++       RR G  
Sbjct: 281 --DRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDM-------RRNGVK 331

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
             ++T   +    C E K   A   LLE+++     P+V      +     SG +D  H+
Sbjct: 332 PDVVTYSTLINVLCKERKFQDAFR-LLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHR 390

Query: 314 VFEDYICSEKFPPAELYATLVEG 336
           V+E  + S   P    Y+ ++ G
Sbjct: 391 VYEMMLKSRCSPDVVTYSIIMNG 413



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 5/184 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  R     +   Y+T++  L  +R+F     + + M   G  P    ++S++ G  K 
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKS 382

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +     + M  +   PDV  Y+ +++   K    D A+++FE +K     P+   Y
Sbjct: 383 GKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAY 442

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC--YAGLITAHTNKIPRADDTATKIIE 207
             ++ +   AG+L+    +   M    AG D  C   AGL+ A  +      D+A +I+E
Sbjct: 443 SMVITSLCRAGKLEEACGMYHGMEVTVAG-DNICRALAGLVAALCD--AERTDSARRIVE 499

Query: 208 LVEQ 211
           +  +
Sbjct: 500 VASE 503



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 6/267 (2%)

Query: 69  LDGV-QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
           L GV  PT  +++ +I G  + SR+ D +   ++M     +P+V  Y  L++   +   +
Sbjct: 80  LSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
             A  +F+EMK+   KPN  TY  L+   + AG++D    ++ +  +     D       
Sbjct: 140 KLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTD-VITCTT 198

Query: 188 ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247
           I     K  R DD A K +E + Q  G    E + +N  +      + +       E   
Sbjct: 199 IVGGLCKASRLDD-ALKFMEEMRQ-MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKA 256

Query: 248 RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
           R+GG L      Y     A  +   +      +E L++    PDV      I  +  +G 
Sbjct: 257 RKGGSLE--AAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQ 314

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLV 334
            D   ++ ED   +   P    Y+TL+
Sbjct: 315 FDASLELLEDMRRNGVKPDVVTYSTLI 341


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            +E   R    +A  YN V++SL          D + D++    +PT   +  LI G  K 
Sbjct: 847  KEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKV 906

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             RL++     ++M   G  P+ A++N LI+  GK  +++ A ++F+ M    ++P+ ++Y
Sbjct: 907  GRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSY 966

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              L++    AG++D       ++ + G   D   Y  +I
Sbjct: 967  TILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRII 1005



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 139/322 (43%), Gaps = 15/322 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF-FRDQM 102
           Y  ++ +L +  +    ++++  M  +G +P + ++ +L+        L DTF  F  QM
Sbjct: 300 YTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDL-DTFKEFWSQM 358

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +A+G++PDV  +  L+ V  K ++ D+A   F+ M+K  + PN  TY  L+     AG++
Sbjct: 359 EADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRI 418

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +    ++  M + G     + Y   I    +   ++ +T  K +E  E+ K    V    
Sbjct: 419 EDALKLLDTMESVGVQPTAYTYITFI----DYFGKSGETG-KAVETFEKMKAKGIVP--- 470

Query: 223 NNAENEMMGVSKEELYNLPTAEYVH---RRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           N         S  E+  L  A+ +    R  G     +T Y++     +++  V     L
Sbjct: 471 NIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVT-YNMMMKCYSKVGQVDEAVNL 529

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AM 338
           L  + ++   PDV +V   I     +G +D   ++F+     +  P    Y TL+ G   
Sbjct: 530 LSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 339 FGYTPKGMQLAQDTLVNMNSRN 360
            G   K ++L +  +    S N
Sbjct: 590 EGRVQKAIELFESMIXKKCSPN 611



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 20/309 (6%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  +   +  +V  L   R F      +D M   G+ P    +++LI G ++  R++D  
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D M++ G  P    Y   I   GK   + +A+  FE+MK   + PN       L + 
Sbjct: 423 KLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSL 482

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           A  G+L     +   +   G   D   Y  ++  ++ K+ + D+    + E++       
Sbjct: 483 AEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYS-KVGQVDEAVNLLSEMIR------ 535

Query: 217 SVETSGNNAENEMMGVSK--EELYNLPTAE-----YVHRRGGFLSRLLTVYHVAFHACAE 269
                 N  E +++ V+   + LY     +     +   +   LS  +  Y+       +
Sbjct: 536 ------NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGK 589

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
              VQ    L E +   + SP+       + C+  + +++   K+F      +  P    
Sbjct: 590 EGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLT 649

Query: 330 YATLVEGAM 338
           Y T++ G +
Sbjct: 650 YNTVIYGLI 658



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +  +  NA  YN ++  L          +VY  M+ +G++P+   + +L+V   K    +
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +M+  G  P+V  +   I V G+    D+A  IF  M      P+  TY  L+
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLI 304

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A   AGQL+    +   M A G   D+  Y  L+
Sbjct: 305 DALCNAGQLENAKELFVKMKANGHKPDQVIYITLL 339



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 65/130 (50%)

Query: 63   VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
            ++  M+ +G++P    +  L+       R+ +  ++ +++K+ G  PD   YN +I+  G
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 123  KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
            K +  ++A+ ++ EM+   + P+  TY  L+     AG ++    +  ++  AG   D F
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVF 1069

Query: 183  CYAGLITAHT 192
             Y  LI  ++
Sbjct: 1070 TYNALIRGYS 1079



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + YN ++  L          D++ DM   G  P    F+ L+    K  ++ + F    +
Sbjct: 789 ASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKE 848

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M +    PD   YN +IS   K  N D+A+  F ++   + +P  +TY  L++  A  G+
Sbjct: 849 MISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR 908

Query: 162 LDPVYAIVRDMTAAGA 177
           L+    +  +M+  G 
Sbjct: 909 LEEAMRLFEEMSDYGC 924



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%)

Query: 64   YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
            ++++   G+ P    ++ +I G  K  R+++     ++M+  G +PD+  YN L+   G 
Sbjct: 986  FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGL 1045

Query: 124  CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
                +QA R++EE++   ++P+  TY  L+   + +   +  Y + ++M   G   +   
Sbjct: 1046 AGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105

Query: 184  YAGL 187
            YA L
Sbjct: 1106 YAQL 1109



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 112/296 (37%), Gaps = 6/296 (2%)

Query: 38   ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
            A +A  +N ++       +   L ++Y +M+    +P    ++ +I    K + L     
Sbjct: 820  APDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALD 879

Query: 98   FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            F   + ++ F P    Y  LI    K    ++A+R+FEEM  Y  KPN   +  L+N   
Sbjct: 880  FFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYG 939

Query: 158  AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
              G  +    + + M   G   D   Y  L+        R D+      EL  +S G   
Sbjct: 940  KIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLC-LAGRVDEALYYFNEL--KSTGLDP 996

Query: 218  VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
               + N   N   G+ K +      A Y   R   +   L  Y+           V+  +
Sbjct: 997  DFIAYNRIIN---GLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAK 1053

Query: 278  TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             + E L+     PDV+     IR Y  S + ++ + V+++ +     P    YA L
Sbjct: 1054 RMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 45.1 bits (105), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 129/344 (37%), Gaps = 59/344 (17%)

Query: 76   RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
            R  +  L+ GT+  + +     F +++  NG   + +    L+ V  K K    A +IF+
Sbjct: 717  RSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFD 776

Query: 136  EM-KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +  KK  + P   +Y CL+         +  + + +DM   G   D F +  L+  H   
Sbjct: 777  KFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGK- 835

Query: 195  IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
                   + KI EL E  K                              E + RR     
Sbjct: 836  -------SGKITELFELYK------------------------------EMISRR---CK 855

Query: 255  RLLTVYHVAFHACAELKDV-QAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGH 312
                 Y++   + A+  ++ +A++   +++  D R +P  Y  +  I      G ++   
Sbjct: 856  PDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL--IDGLAKVGRLEEAM 913

Query: 313  KVFE---DYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG 368
            ++FE   DY C    P   ++  L+ G    G T    QL +  +VN   R     P + 
Sbjct: 914  RLFEEMSDYGCK---PNCAIFNILINGYGKIGDTETACQLFK-RMVNEGIR-----PDLK 964

Query: 369  SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
            S  +LV     +G    A Y ++ +++  + P   A     NGL
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGL 1008



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 1/148 (0%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTM 87
           AEE          S    +V  L   +R      ++D      G+ PT   ++ LI   +
Sbjct: 740 AEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELL 799

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           +    +  +     MK  G  PD   +N L++V GK     +   +++EM     KP+  
Sbjct: 800 EVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAI 859

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAA 175
           TY  ++++ A +  LD       D+ ++
Sbjct: 860 TYNIVISSLAKSNNLDKALDFFYDLVSS 887



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++ L  + R     ++++ M+     P    F++L+    K   ++       +M 
Sbjct: 580 YNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMT 639

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  YN +I    K    + A   F ++KK  + P+  T   LL      GQ+ 
Sbjct: 640 VMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK-SMHPDHVTICTLLPGLVKCGQIG 698

Query: 164 PVYAIVRD 171
              +I RD
Sbjct: 699 DAISIARD 706



 Score = 38.1 bits (87), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 49/111 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L   +R      +Y++M   G+ P    ++SL++       ++      ++++
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              G  PDV  YN LI      +N + A  +++ M      PN  TY  L N
Sbjct: 1061 LAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NY      YN ++ SL   +++ L+  VY+ M+ DG  P    ++ ++    +  +    
Sbjct: 217 NYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRL 276

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +   D+M  +GF PD+  YN L+           A+ +   M++  V+P    +  L++ 
Sbjct: 277 YRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDG 336

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
            + AG+L+     + +M   G   D  CY  +IT + +  ++ +A++   ++ E
Sbjct: 337 LSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTE 390



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +  ++ +   YN ++  L +  +     ++   M   GV+P    F +L+ G  + 
Sbjct: 281 DEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRA 340

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+   +F D+M   G  PDV  Y  +I+        ++A  +F+EM +    PN  TY
Sbjct: 341 GKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTY 400

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++     AG+     +++++M + G   +   Y+ L+    N  K+  A +    ++E
Sbjct: 401 NSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNAGKVLEAHEIVKDMVE 460



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T+V  L+   +    +   D+M+  G  P    +  +I G + G  L+       +M 
Sbjct: 330 FTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMT 389

Query: 104 ANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G LP+V  YN +I    + GK K   +A  + +EM+     PN   Y  L+N    AG
Sbjct: 390 EKGQLPNVFTYNSMIRGFCMAGKFK---EACSLLKEMESRGCNPNFVVYSTLVNNLRNAG 446

Query: 161 QLDPVYAIVRDMTAAG 176
           ++   + IV+DM   G
Sbjct: 447 KVLEAHEIVKDMVEKG 462


>gi|449530988|ref|XP_004172473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 347

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN  +T L   +    +R +  D++L G  P    + SLI       ++ + F  RD M 
Sbjct: 154 YNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMI 213

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P++ VYN LI+   K  N D+A R+F ++ +  + P   TY  L++     G+  
Sbjct: 214 NAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTT 273

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +   M   G       Y+ LI
Sbjct: 274 EALELKDKMREEGICPSSITYSTLI 298



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 31/292 (10%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-- 127
           DG+  + ++++SLI G  +   LQ       +MK     P+V  Y  LI+  G C     
Sbjct: 5   DGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIA--GWCDKGMM 62

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
           D+A   + +M    + PN      ++++    G++D    I+  +    A +D       
Sbjct: 63  DKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQI----ADIDPIA---- 114

Query: 188 ITAHTNKIPRADDTATKIIELVEQ-SKGWSSVETSGNNAEN-EMMGVSKEELYNLPTAEY 245
             AH+ ++P++D    +  ++V+   K   S+  S N   N  + G+ K +       + 
Sbjct: 115 AHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPMSNNIVYNIAITGLCKSK-----NIDD 169

Query: 246 VHRRGGFLSRLLT--------VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
           V R    LS LL          Y    HAC+ +  V     L + +      P++ +   
Sbjct: 170 VRR---ILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNA 226

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQL 348
            I     SG++D   ++F         P    Y TL++G    G T + ++L
Sbjct: 227 LINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALEL 278



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L         R +++ +   G+ PT   +++LI G  KG R  +    +
Sbjct: 220 NIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELK 279

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           D+M+  G  P    Y+ LI        S+Q++ +  EM K
Sbjct: 280 DKMREEGICPSSITYSTLIHGLYMEGKSEQSMGLLNEMMK 319


>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 689

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY +M   GV+    ++++L+    +  R         +M  NGFLP+ A Y  L+   
Sbjct: 292 NVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAY 351

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-D 180
           G+ + S+ A+ +++EMK+  ++ N   Y  LL  CA  G  D  + I  DM ++   L D
Sbjct: 352 GRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCD 411

Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIE 207
            + ++ LIT +  +  +  A+    ++IE
Sbjct: 412 SWTFSSLITIYSCSGNVSEAERMLNEMIE 440



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +N   YNT++ ++   +R +  + +Y +M  +G  P    + SL+    +G   +D  F 
Sbjct: 304 SNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAYGRGRYSEDALFV 363

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTYVCLLNACA 157
             +MK  G   +  +YN L+++C     +D A +IFE+MK       +  T+  L+   +
Sbjct: 364 YKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCDSWTFSSLITIYS 423

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            +G +     ++ +M  +G     F    L+  +  K+ R DD      +L++   G S 
Sbjct: 424 CSGNVSEAERMLNEMIESGFQPTIFVLTSLVQCY-GKVGRTDDVLKTFNQLLDL--GISP 480

Query: 218 VETSGNNAENEMMGVSKEELYNL 240
            +       N M    KEEL  L
Sbjct: 481 DDRFCGCLLNVMTQTPKEELGKL 503



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 63/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN  +      +    +  ++D+M+  GV+P    F ++I      S       + ++M 
Sbjct: 169 YNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEWFEKMP 228

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PD   Y+ +I   G+  N D A+R+++  +  + + +  T+  L+     AG  D
Sbjct: 229 SFRCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYD 288

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               + ++M A G   +   Y  L+ A
Sbjct: 289 GCLNVYQEMKALGVKSNMVIYNTLLDA 315



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 72  VQPTRD-LFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           ++PTR+ + +++ +   + S+  D      D+M   G  PD   ++ +IS    C   ++
Sbjct: 160 IRPTREVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNK 219

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           A+  FE+M  +  +P+  TY  +++A   AG +D    +          LD   ++ LI
Sbjct: 220 AVEWFEKMPSFRCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLI 278


>gi|293334337|ref|NP_001169631.1| uncharacterized protein LOC100383512 [Zea mays]
 gi|224030539|gb|ACN34345.1| unknown [Zea mays]
 gi|413953501|gb|AFW86150.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
          Length = 790

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 24/327 (7%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S YN +++SL  Q+    +  V+  M+  G  P +  +  +I   +K   L++      +
Sbjct: 244 SVYNYMISSLQKQKLHGKVIHVWKQMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDLFGE 303

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M+   F+P+ A Y+ LIS   +    +QA+R+FEEMK   + P+  T   LL        
Sbjct: 304 MRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNED 363

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
                A+  DM ++    D+  Y  LI  +            K+    E  + +  +E +
Sbjct: 364 YPKALALFSDMESSKVIPDEVIYGILIRIY-----------GKLGLYEEARQTFGEIEKA 412

Query: 222 G-NNAENEMMGVSKEEL------YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           G  N E   + +++  L        L   E +  RG   SR      +  H   E  DV 
Sbjct: 413 GLLNDEQTYVAMAQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKE--DVV 470

Query: 275 AMETLLEMLKKDRKS-PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           A E     L + +   PD +     +R Y+  G +D    +    +  + F   E  +T 
Sbjct: 471 AAEDTFRALSQSQHGLPDAFCCNDMLRLYMRLGRLDKARALVSVLLREDGFQLDENLSTT 530

Query: 334 VEGAMFGYTPKGMQLAQDTLVNMNSRN 360
           V   M  Y   GM    + L+    RN
Sbjct: 531 V---MEFYCKSGMVEDAEKLLEDIQRN 554



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 2/173 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR +    + Y+ ++++ +   +      ++++M   G+ P+     SL+    K  
Sbjct: 303 EMRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNE 362

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
                      M+++  +PD  +Y  LI + GK    ++A + F E++K  +  + QTYV
Sbjct: 363 DYPKALALFSDMESSKVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYV 422

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDT 201
            +      AG  D    ++  M   G    +F Y+ L+  H  K  +  A+DT
Sbjct: 423 AMAQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKEDVVAAEDT 475


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 58/320 (18%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+++V S           DV+ +M   G +P    F+ L+ G  +  ++ +       M 
Sbjct: 82  YSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMN 141

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PDV  YN +I+   K K  D+A+ + E MK+ +V P   TY  L++      +L 
Sbjct: 142 SRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQ 201

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS-----SV 218
             Y +   M        +  Y+ L     NK+ RA        +LVE S+ +S     +V
Sbjct: 202 QAYEVFEKMAEGPCACTEPAYSVLF----NKLQRAG-------KLVEASRVYSDMCRKNV 250

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYV-------------------------------- 246
             + N     ++G+SK +  N+  A+ V                                
Sbjct: 251 CMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAK 310

Query: 247 ----HRRGGFLSRLLTVYHVAFH---ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
                 RG  +S  +  Y+       + A+L+D  AME    ML + R  PD       I
Sbjct: 311 EMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQD--AMELTYFMLDQGR-LPDTCSYNLMI 367

Query: 300 RCYLHSGDIDNGHKVFEDYI 319
           R +  +GD +  + +F+D I
Sbjct: 368 RGFCANGDTNEAYCLFQDMI 387



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 17/141 (12%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           GG +     VT    ++ A   YA     Y+ ++  L   RR    ++++ +M   G+ P
Sbjct: 269 GGNVEAAKLVTEMMGKKIAPDFYA-----YSILINGLCKARRPGEAKEMFQEMRGRGISP 323

Query: 75  TRDLFHSLIVGTMKGSRLQD----TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-- 128
           T   +++L+ G +  ++LQD    T+F  DQ    G LPD   YN +I   G C N D  
Sbjct: 324 TVVTYNTLLEGLLSTAKLQDAMELTYFMLDQ----GRLPDTCSYNLMIR--GFCANGDTN 377

Query: 129 QAIRIFEEMKKYEVKPNGQTY 149
           +A  +F++M K  +  N  TY
Sbjct: 378 EAYCLFQDMIKDGIVLNTWTY 398



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    +  LI    K  ++++ F     M+  GF+P + ++  L+S   +    D A  +
Sbjct: 432 PNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFEL 491

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           ++EM +   +    +   LL+     G +D     ++ MT  G   DKF Y  L+     
Sbjct: 492 YKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCW 551

Query: 194 KIPRADDTATKIIELVEQSK 213
           +  +AD     + ELV   K
Sbjct: 552 Q-GKADQARKLVEELVRDGK 570



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF--FFRDQMKANGFLPDVAVYNYLISV 120
           ++ DM+ DG+      ++ +IVG +K       +  F R Q   N  +P   ++ Y I +
Sbjct: 382 LFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILI 441

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
              CK    ++A ++   M+     P+ + +  LL+  A AG+LD  + + ++M+
Sbjct: 442 SSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMS 496


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 125/322 (38%), Gaps = 22/322 (6%)

Query: 25  TSAGAEEYARRNYANNAS----EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           T A +   A+    N  +     Y  +V  L   ++      + + +  +G  PT   ++
Sbjct: 247 TDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYN 306

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           +L+ G  K  RL++      ++  NG  PDV  Y  LI   GK K S +A ++F+EM   
Sbjct: 307 ALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALR 366

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +  +   Y  L+      G++    ++ + MT+ G      C   ++T  T       D
Sbjct: 367 GLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG------CVPDVVTLST-----MID 415

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGFLS 254
             +K   +    + + S+E  G  A NE++      G+ K    +         +  F +
Sbjct: 416 GLSKAGRIGAAVRIFKSMEARG-LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 474

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
                Y++      +  DV+A     + + +    PDVY     I  +  +G+ D    V
Sbjct: 475 PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGV 534

Query: 315 FEDYICSEKFPPAELYATLVEG 336
           F+D   S        Y  L+ G
Sbjct: 535 FDDMSSSRCSANVVTYGALISG 556



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 28/331 (8%)

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++++     +++ ANG  P +A YN L++  G CK    ++AI +  ++      P+  T
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLN--GLCKMGRLEEAIDLLRKIVDNGCTPDVVT 58

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKII 206
           Y  L++      +    Y + ++M   G  LD  CY  LI     T KIP+    A+ + 
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQ----ASSVY 114

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
           + +        V T     +    G+SK          +       L+    VY    H 
Sbjct: 115 KTMTSHGCVPDVVTLSTMID----GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 170

Query: 267 CAELKDVQAMETLLEMLKKDRK---SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
              L   + M+  LEML + +K   +PD       I     SGD++     F++ + +  
Sbjct: 171 ---LCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGC 227

Query: 324 FPPAELYATLVEG-AMFGYTPKGMQ-LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381
            P    Y  L+ G    G T      LAQ+T +N  + +I     +  D L      K+ 
Sbjct: 228 KPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAI-VDWL-----AKNK 281

Query: 382 GYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               A  + + + A   TP++    A  NGL
Sbjct: 282 KIEEAVALMEKITANGCTPTIATYNALLNGL 312



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 66/160 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E A R  A +   Y  ++  L    +      VY  M   G  P      ++I G  K 
Sbjct: 80  KEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 139

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+         M+A G  P+  VY+ LI    K +  D A+ +  +MKK    P+  TY
Sbjct: 140 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 199

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             L++    +G ++   A   +M  AG   D + Y  LI+
Sbjct: 200 NVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 239



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           +T++  L+   R      ++  M   G+ P   ++ +LI G  K  ++        QMK 
Sbjct: 130 STMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK 189

Query: 105 NGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
               PD   YN LI   G CK+ D +A R  F+EM +   KP+  TY  L++    AG  
Sbjct: 190 AFCTPDTITYNVLID--GLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNT 247

Query: 163 DPV-YAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRA 198
           D   +++ ++ T  G  +D   Y  ++   A   KI  A
Sbjct: 248 DAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEA 286



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 53/128 (41%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R  A N   Y+ ++  L   R+     ++   M      P    ++ LI G  K   ++ 
Sbjct: 436 RGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEA 495

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              F D+M   G  PDV  YN LIS   K  N+D A  +F++M       N  TY  L++
Sbjct: 496 ARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALIS 555

Query: 155 ACAAAGQL 162
                 QL
Sbjct: 556 GLCKRRQL 563



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 63/145 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L  ++R F    ++ +M L G+      + +LI   ++  ++         M 
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 118

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G +PDV   + +I    K      A+RIF+ M+   + PN   Y  L++    A ++D
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 178

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++  M  A    D   Y  LI
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLI 203



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 4/179 (2%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + YN ++  L    R     D+   ++ +G  P    + SLI G  K  R  + +    +
Sbjct: 22  ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 81

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M   G   D   Y  LI    +     QA  +++ M  +   P+  T   +++  + AG+
Sbjct: 82  MALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGR 141

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
           +     I + M A G   ++  Y+ LI  H     R  D A ++  L +  K + + +T
Sbjct: 142 IGAAVRIFKSMEARGLAPNEVVYSALI--HGLCKARKMDCALEM--LAQMKKAFCTPDT 196


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   Y+ ++ +     +F    ++ +DM  +GV+P    + +LI    K 
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE 347

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + QD F   + M+A G  P+V  YN ++    K    D+  R++E M K    P+  TY
Sbjct: 348 RKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTY 407

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             ++N  + AG LD    +   + ++  G D   Y+ +IT+
Sbjct: 408 SIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITS 448



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 17/210 (8%)

Query: 8   YRHHKSVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYD 65
           +R H    G L R  RFF      EE AR+  +  A+ Y   + +L         R   +
Sbjct: 238 FRQH----GELDRVIRFF-----EEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVE 288

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           ++   GV P    +  LI    +  +   +    + M+ NG  PDV  Y+ LI+V  K +
Sbjct: 289 ELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKER 348

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
               A R+ E M+     PN  TY  +++    +G++D V+ +   M  +    D   Y+
Sbjct: 349 KFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYS 408

Query: 186 GLITAHTNKIPRAD--DTATKIIELVEQSK 213
            ++    N + +A   D+A K+ EL++ S+
Sbjct: 409 IIM----NGLSKAGMLDSAVKLFELIKSSR 434



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 124/323 (38%), Gaps = 37/323 (11%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+    +   N   Y  ++  L    +  L R+V+ +M  +G +P    + +LI    + 
Sbjct: 112 EKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRA 171

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             + +      + ++     DV     ++   G CK S  D A++  EEM++  V+PN  
Sbjct: 172 GEIDEALRVMIEQRSLELPTDVITCTTIVG--GLCKASRLDDALKFMEEMRQMGVRPNEV 229

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAG----------LDKFCYAGLITAHTNKIPR 197
           TY  L++     G+LD V     +  A   G          LD  C AG +         
Sbjct: 230 TYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYL--------- 280

Query: 198 ADDTATKIIELVEQSKGWSSVETSG----NNAENEMMGVSKEELYNLPTAEYVHRRGGFL 253
             D A K +E + QS     V T        A       S E L ++       RR G  
Sbjct: 281 --DRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDM-------RRNGVK 331

Query: 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
             ++T   +    C E K   A   LLE+++     P+V      +     SG +D  H+
Sbjct: 332 PDVVTYSTLINVLCKERKFQDAFR-LLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHR 390

Query: 314 VFEDYICSEKFPPAELYATLVEG 336
           V+E  + S   P    Y+ ++ G
Sbjct: 391 VYEMMLKSRCSPDVVTYSIIMNG 413



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 5/184 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  R     +   Y+T++  L  +R+F     + + M   G  P    ++S++ G  K 
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKS 382

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +     + M  +   PDV  Y+ +++   K    D A+++FE +K     P+   Y
Sbjct: 383 GKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAY 442

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC--YAGLITAHTNKIPRADDTATKIIE 207
             ++ +   AG+L+    +   M    AG D  C   AGL+ A  +   +  D+A +I+E
Sbjct: 443 SMVITSLCRAGKLEEACGMYHGMEVTVAG-DNICRALAGLVAALCD--AKRTDSARRIVE 499

Query: 208 LVEQ 211
           +  +
Sbjct: 500 VARE 503



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 6/267 (2%)

Query: 69  LDGV-QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
           L GV  PT  +++ +I G  + SR+ D +   ++M     +P+V  Y  L++   +   +
Sbjct: 80  LSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
             A  +F+EMK+   KPN  TY  L+   + AG++D    ++ +  +     D       
Sbjct: 140 KLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTD-VITCTT 198

Query: 188 ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247
           I     K  R DD A K +E + Q  G    E + +N  +      + +       E   
Sbjct: 199 IVGGLCKASRLDD-ALKFMEEMRQ-MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKA 256

Query: 248 RRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307
           R+GG L      Y     A  +   +      +E L++    PDV      I  +  +G 
Sbjct: 257 RKGGSLE--AAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQ 314

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLV 334
            D   ++ ED   +   P    Y+TL+
Sbjct: 315 FDASLELLEDMRRNGVKPDVVTYSTLI 341


>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
 gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 1/171 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S++N V+ +L +     L+  +Y  +    ++P    F  ++    K     +     
Sbjct: 140 NISDFNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVL 199

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           DQM   GF P+VA    LI+   K        ++FE M +   KPN QTY CLL      
Sbjct: 200 DQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYV 259

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
           G++D  + ++ D+       D + Y  ++     K+ R+D+    + E +E
Sbjct: 260 GRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFC-KVGRSDEAMELLNEAME 309



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 57/134 (42%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V D MM  G  P       LI    K  +LQ+TF   + M   G  P++  YN L+  
Sbjct: 196 KRVLDQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKG 255

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                  D+A  + E++KK  V+P+  TY  +++     G+ D    ++ +    G   +
Sbjct: 256 MCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPN 315

Query: 181 KFCYAGLITAHTNK 194
              +  L+  +  +
Sbjct: 316 VVTFNTLLDGYAKE 329



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/159 (18%), Positives = 66/159 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  ++ +  N +    ++ S     +      V++ M   G +P    ++ L+ G    
Sbjct: 200 DQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYV 259

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + F   + +K     PD+  Y  ++    K   SD+A+ +  E  +  + PN  T+
Sbjct: 260 GRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTF 319

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             LL+  A  G+    + +++ M       D   Y+ L+
Sbjct: 320 NTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLL 358



 Score = 38.1 bits (87), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 101/252 (40%), Gaps = 8/252 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  +    R     ++ +D+    V+P    + +++ G  K  R  +     
Sbjct: 245 NIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELL 304

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++    G  P+V  +N L+    K     +   + + MK+ +  P+  +Y  LL+     
Sbjct: 305 NEAMEMGLAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLW 364

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV- 218
           G++     I  +M  +G   D+     L+     K  + +D      E+ E+ K    V 
Sbjct: 365 GKVLAGLRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRGFVI 424

Query: 219 ETSGNNAENEMMGVSK---EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
           E S      + + V+K   +   NL    +   R G++ RL+T+ +V    C   K  +A
Sbjct: 425 EQSTYALVIQALWVAKKVDDAFINL----HQMVRLGYIPRLITINNVIQALCVGGKVDKA 480

Query: 276 METLLEMLKKDR 287
              L+ M +  +
Sbjct: 481 FYVLVLMYENSK 492


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 40  NASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N   YN V+ +       F  + +++++M+ +GVQP R  ++SL+    +G   +     
Sbjct: 256 NLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNL 315

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            ++M   G   DV  YN L+    K    D A  I  EM   ++ PN  TY  + +  A 
Sbjct: 316 FNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAK 375

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           AG+L+    +  +M   G GLD+  Y  L++ +  K+ R +D
Sbjct: 376 AGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYA-KLGRFED 416



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 1/147 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++++L    +  L + V++  + +G   T   F +LI    K     +     + MK 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 105 NGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +G  P++  YN +I  CGK      + + IFEEM +  V+P+  TY  LL  C+  G  +
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +  +M   G   D F Y  L+ A
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLLDA 337



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++      RF     V  +M   GV+     +++L+ G  K  +  +      +MK
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   P++  Y+ LI V  K    ++A+ +F E K+  +K +   Y  L+NA    G +D
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++ +MT  G   +   Y  +I A
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDA 547



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 71/162 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   YNT++ ++    +  L  ++  +M    + P    + ++  G  K  
Sbjct: 318 EMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAG 377

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL+D     ++MK  G   D   YN L+S+  K    + A+++ +EM    VK +  TY 
Sbjct: 378 RLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYN 437

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            LL+     G+ + V  + ++M       +   Y+ LI  ++
Sbjct: 438 ALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYS 479



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 72/162 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R     +   YN+++   +    +   R+++++M+  G+      +++L+    KG
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKG 341

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++   +    +M     LP+V  Y+ +     K    + A+ ++ EMK   +  +  +Y
Sbjct: 342 GQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             LL+  A  G+ +    + ++M ++G   D   Y  L+  +
Sbjct: 402 NTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY 443


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ ++ +   +R+     ++Y +M+   + PT   ++S+I G  K  R+ D     D M 
Sbjct: 83  FSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMA 142

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PDV  ++ LI+   K K  D  + IF EM +  +  N  TY  L++     G LD
Sbjct: 143 SKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 202

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               ++ +M + G   D   +  ++    +K
Sbjct: 203 AAQDLLNEMISCGVAPDYITFHCMLAGLCSK 233



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 54/129 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++     Q R    + + D M   G  P    F +LI G  K  R+ +      +M 
Sbjct: 118 YNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMH 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G + +   Y  LI    +  + D A  +  EM    V P+  T+ C+L    +  +L 
Sbjct: 178 RRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELR 237

Query: 164 PVYAIVRDM 172
             +AI+ D+
Sbjct: 238 KAFAILEDL 246



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 1/140 (0%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++++ +M   G+ P    ++ +I       R  D       M      PD+  ++ LI+ 
Sbjct: 30  QNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINA 89

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K +   +A  I++EM ++ + P   TY  +++      ++D    ++  M + G   D
Sbjct: 90  FVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPD 149

Query: 181 KFCYAGLITAHTNKIPRADD 200
              ++ LI  +  K  R D+
Sbjct: 150 VVTFSTLINGYC-KAKRVDN 168


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 41/385 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TVV  L + +RF     ++++M+  G++P      +LI G  K S++++ F    +M 
Sbjct: 298 YTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRML 357

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +      V++YN LIS   +  + D+A  I   M+    +P   TY  LLN     G ++
Sbjct: 358 SLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMME 417

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               ++  M  +G   D++ Y  L+     T+++ +A    +  +E+     G+  +  S
Sbjct: 418 KAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEV----GGFCDI-VS 472

Query: 222 GNNAENEMMGVS---------KEELYNLPTAEYVHRRGGFLSRLLTV--YHVAFHACAEL 270
            N   +    V          KE  Y    A+ V   G  ++ L +V  Y++A       
Sbjct: 473 CNILIDAFCKVKKVKSALELFKEMDYKGMQADAV-TYGTLINGLFSVGYYNLA------- 524

Query: 271 KDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
                 E L E + K +  P+V  Y +M +  C +  GD+    K+F   I  E  P   
Sbjct: 525 ------EELFEQMLKAQIDPNVNLYNIMLHHLCKV--GDLKRAQKIFLHMIQKEILPDIV 576

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANY 388
            Y TL+     G   + M+ A D   +M ++ +   P   +   L+      G  T A  
Sbjct: 577 TYNTLI--YWLGKNSRAME-ALDLFKDMRTKGV--EPDSLTFKYLINGLLDEGRSTLAYE 631

Query: 389 IWDLMQARKITPSLPAVEAYYNGLK 413
           +W+ M    I       E   + LK
Sbjct: 632 VWEYMMENGIILDREVSERLISVLK 656



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-----VGTMKGSRLQD 94
           +A  Y T++  L S   + L  ++++ M+   + P  +L++ ++     VG +K  R Q 
Sbjct: 504 DAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLK--RAQK 561

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            F     M     LPD+  YN LI   GK   + +A+ +F++M+   V+P+  T+  L+N
Sbjct: 562 IFL---HMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLIN 618

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                G+    Y +   M   G  LD+
Sbjct: 619 GLLDEGRSTLAYEVWEYMMENGIILDR 645



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+  +++L    R  L+ ++  DM   G  P     +  I    K +RL D     ++M+
Sbjct: 228 YSRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMR 287

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PDV  Y  ++      K   +A+ ++EEM K  +KP+      L+       +++
Sbjct: 288 GKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVE 347

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + +   M +    L    Y  LI+ 
Sbjct: 348 EAFELASRMLSLNIELSVSIYNALISG 374


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 40  NASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N   YN V+ +       F  + +++++M+ +GVQP R  ++SL+    +G   +     
Sbjct: 256 NLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNL 315

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            ++M   G   DV  YN L+    K    D A  I  EM   ++ PN  TY  + +  A 
Sbjct: 316 FNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAK 375

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           AG+L+    +  +M   G GLD+  Y  L++ +  K+ R +D
Sbjct: 376 AGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYA-KLGRFED 416



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 1/147 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++++L    +  L + V++  + +G   T   F +LI    K     +     + MK 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 105 NGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +G  P++  YN +I  CGK      + + IFEEM +  V+P+  TY  LL  C+  G  +
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +  +M   G   D F Y  L+ A
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLLDA 337



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++      RF     V  +M   GV+     +++L+ G  K  +  +      +MK
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   P++  Y+ LI V  K    ++A+ +F E K+  +K +   Y  L+NA    G +D
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               ++ +MT  G   +   Y  +I A
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDA 547



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 71/162 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   YNT++ ++    +  L  ++  +M    + P    + ++  G  K  
Sbjct: 318 EMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAG 377

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL+D     ++MK  G   D   YN L+S+  K    + A+++ +EM    VK +  TY 
Sbjct: 378 RLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYN 437

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            LL+     G+ + V  + ++M       +   Y+ LI  ++
Sbjct: 438 ALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYS 479



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 72/162 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  R     +   YN+++   +    +   R+++++M+  G+      +++L+    KG
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKG 341

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++   +    +M     LP+V  Y+ +     K    + A+ ++ EMK   +  +  +Y
Sbjct: 342 GQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSY 401

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             LL+  A  G+ +    + ++M ++G   D   Y  L+  +
Sbjct: 402 NTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY 443


>gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1129

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++++     +   + +V+ +M+  GV+P    + SLI G  K  ++   F     ++
Sbjct: 544 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAKAFGAYGILR 603

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD  V+N LI+ CG+    D+A  +  EM  + + + P+  T   L+ ACA AGQ
Sbjct: 604 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGALMKACAKAGQ 663

Query: 162 LD 163
           +D
Sbjct: 664 VD 665



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 22/221 (9%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G   D  +Y  LIS C K    D    +F EM    V+PN  TY  L++ CA AGQ+   
Sbjct: 536 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAKA 595

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
           +     + +     D+  +  LITA   +  + RA D       L E       ++    
Sbjct: 596 FGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDV------LAEMGAETHPIDPDHI 649

Query: 224 NAENEMMGVSK-------EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
                M   +K       +E+YN+     +H+    +     VY +A + C++  D +  
Sbjct: 650 TVGALMKACAKAGQVDRAKEVYNM-----LHKYN--IKGTPEVYTIAVNFCSQTGDWEFA 702

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            ++ + + +   +PD   +   +    H+G +D   +  ++
Sbjct: 703 RSVYDDMTRKGVAPDEMFLSALVDVAGHAGLVDIAFETLQE 743



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 43  EYNTVVTSLTSQR-RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF---- 97
           E  T+  +  SQ   +   R VYDDM   GV P  ++F S +V     + L D  F    
Sbjct: 684 EVYTIAVNFCSQTGDWEFARSVYDDMTRKGVAPD-EMFLSALVDVAGHAGLVDIAFETLQ 742

Query: 98  -FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             R Q    G +P    Y+ L+  C   KN  +A+ ++E++K  ++KP   T   L+ A 
Sbjct: 743 EARTQGTQLGIVP----YSSLMGACSNAKNWQKALELYEDIKAIKLKPTVSTMNALMTAL 798

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               QL      + +M + G   +   Y+ L+ A   K
Sbjct: 799 CDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASERK 836



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D+ +DM   G+     ++H+      K  +     F   ++  N   P ++ +N L+SVC
Sbjct: 460 DLLEDMERRGLLDMSKIYHAKFFKICKIQKAVKEAFRFCKLVPN---PSLSTFNMLMSVC 516

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
              ++SD A  +    +   +K + + Y  L++ CA +G++D ++ +  +M  AG   + 
Sbjct: 517 SSSQDSDGAFEVLRLAQGAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNV 576

Query: 182 FCYAGLI 188
             Y  LI
Sbjct: 577 HTYGSLI 583



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 49/110 (44%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++    L+ +LI    K  ++   F    +M   G  P+V  Y  LI  C K     +A
Sbjct: 536 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAKA 595

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
              +  ++   VKP+   +  L+ AC  +G +D  + ++ +M A    +D
Sbjct: 596 FGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPID 645



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/113 (18%), Positives = 54/113 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++++ + ++ + +    ++Y+D+    ++PT    ++L+     G +LQ       +MK
Sbjct: 756 YSSLMGACSNAKNWQKALELYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMK 815

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           + G  P++  Y+ L+    +  + D    +  + K+  + P    Y C++  C
Sbjct: 816 SFGLCPNIVTYSILLVASERKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMC 868


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY +M + GV+P   ++++L+    +  R         +M  NGF P+   Y  L+   
Sbjct: 288 NVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAY 347

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM-TAAGAGLD 180
           G+ + S+ A+ +++EMK+  ++ N   Y  LL  CA  G  +  + I  DM T+A    D
Sbjct: 348 GRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCD 407

Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIE 207
            + ++ LIT +  T  +  A+    ++IE
Sbjct: 408 SWTFSSLITIYSCTGNVSEAERMLNEMIE 436



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 4/198 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++   +R +  + +Y +M  +G  P    + SL+    +G   +D  F   +MK
Sbjct: 305 YNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMK 364

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQL 162
             G   +  +YN L+++C     +++A  IFE+MK       +  T+  L+   +  G +
Sbjct: 365 EKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNV 424

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                ++ +M  +G+    F    L+  +  K+ R DD      +L++   G S  +   
Sbjct: 425 SEAERMLNEMIESGSQPTIFVLTSLVQCY-GKVGRTDDVVKTFNQLLDL--GISPDDRFC 481

Query: 223 NNAENEMMGVSKEELYNL 240
               N M    KEEL  L
Sbjct: 482 GCLLNVMTQTPKEELGKL 499



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 123/314 (39%), Gaps = 46/314 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN  +      +    +  ++D+M+  GV+P    F ++I      S       + ++M 
Sbjct: 165 YNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFEKMS 224

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIR------------------------------- 132
           + G  PD   Y+ +I   G+  N D A+R                               
Sbjct: 225 SFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYD 284

Query: 133 ----IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               +++EMK   VKPN   Y  LL+A   A +     +I  +MT  G   +   YA L+
Sbjct: 285 GCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLL 344

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE--ELY-NLPTAEY 245
            A+  +   ++D      E+ E+    ++   +   A    +G++ E  E++ ++ T+  
Sbjct: 345 RAY-GRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSAT 403

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
                   S L+T+Y     +C    +V   E +L  + +    P ++++   ++CY   
Sbjct: 404 CLCDSWTFSSLITIY-----SCT--GNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKV 456

Query: 306 GDIDNGHKVFEDYI 319
           G  D+  K F   +
Sbjct: 457 GRTDDVVKTFNQLL 470



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 72  VQPTRD-LFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           ++PTR+ + +++ +   + S+  D      D+M   G  PD   ++ +IS    C   ++
Sbjct: 156 IRPTREVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNK 215

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           A+  FE+M  +  +P+  TY  +++A   AG +D    +          LD   ++ LI
Sbjct: 216 AVEWFEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLI 274


>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
          Length = 1039

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 129/327 (39%), Gaps = 24/327 (7%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S YN +++SL  Q+    +  V+  M+  G  P +  +  +I   +K   L++      +
Sbjct: 244 SVYNYMISSLQKQKLHGKVIHVWKQMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDLFGE 303

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M+   F+P+ A Y+ LIS   +    +QA+R+FEEMK   + P+  T   LL        
Sbjct: 304 MRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNED 363

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
                A+  DM ++    D+  Y  LI  +            K+    E  + +  +E +
Sbjct: 364 YPKALALFSDMESSKVIPDEVIYGILIRIY-----------GKLGLYEEARQTFGEIEKA 412

Query: 222 G-NNAENEMMGVSKEEL------YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           G  N E   + +++  L        L   E +  RG   SR      +  H   E  DV 
Sbjct: 413 GLLNDEQTYVAMAQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKE--DVV 470

Query: 275 AMETLLEMLKKDRKS-PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           A E     L + +   PD +     +R Y+  G +D    +    +  + F   E  +T 
Sbjct: 471 AAEDTFRALSQSQHGLPDAFCCNDMLRLYMRLGRLDKARALVSVLLREDGFQLDENLSTT 530

Query: 334 VEGAMFGYTPKGMQLAQDTLVNMNSRN 360
           V   M  Y   GM    + L+    RN
Sbjct: 531 V---MEFYCKSGMVEDAEKLLEDIQRN 554



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT + S+    +      +YD M+  GV  +   F+++I    KG +L          +
Sbjct: 749 YNTFIKSMLESGKLHSAVSIYDRMVSSGVSQSMQTFNTMISVYGKGGKLDKAVEMFAAAQ 808

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   D  +Y  ++S+ GK     +A  +F+ MK+  ++P   ++  ++NA A +G   
Sbjct: 809 ELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLFS 868

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
              ++ ++M   G   D F Y  LI A+T 
Sbjct: 869 EAKSVFQEMQDCGHAPDSFSYLALIRAYTE 898



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 2/173 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR +    + Y+ ++++ +   +      ++++M   G+ P+     SL+    K  
Sbjct: 303 EMRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNE 362

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
                      M+++  +PD  +Y  LI + GK    ++A + F E++K  +  + QTYV
Sbjct: 363 DYPKALALFSDMESSKVIPDEVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQTYV 422

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDT 201
            +      AG  D    ++  M   G    +F Y+ L+  H  K  +  A+DT
Sbjct: 423 AMAQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKEDVVAAEDT 475


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   Y ++V +    R   +   +   M+ +G  P    F  L+ G    
Sbjct: 251 DEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDD 310

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
            ++ D     + M A G+ P    YN LI   G C   D  +A+ +F  M K +  P+ +
Sbjct: 311 GKVHDALGMWNWMVAEGWAPSTISYNVLIR--GLCHIGDLKRALFVFSCMGKSDCLPDVR 368

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
           TY  L++  + AG LD   +I  DMT AG   +   Y  ++     K+
Sbjct: 369 TYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKV 416



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 116/300 (38%), Gaps = 27/300 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L  +     +  VYD+M   GV+P    ++ LI    +  R+       D+M 
Sbjct: 130 YNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMA 189

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   +  +IS   K    D+A  I  EM      P G +Y  +++A     ++ 
Sbjct: 190 RKGCRPDEVSHTTIISALCKLDRLDEARGILAEM-----TPVGASYNAVVHALCGQFRMR 244

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET--- 220
            V+ +V +M   G   D   Y  ++ A      R    A  I+  +       +V+T   
Sbjct: 245 EVFLVVDEMVHRGLRPDTVAYTSIVGAFCKA--RELRMACAILARMVTEGCVPNVQTFTV 302

Query: 221 -----SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
                  +   ++ +G     ++N   AE      G+    ++ Y+V       + D++ 
Sbjct: 303 LVKGFFDDGKVHDALG-----MWNWMVAE------GWAPSTIS-YNVLIRGLCHIGDLKR 350

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              +   + K    PDV      I  +  +GD+D    ++ D   +   P   +Y  +V+
Sbjct: 351 ALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVD 410



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 7/171 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E AR+    +   + T++++L    R    R +  +M      P    +++++      
Sbjct: 186 DEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEM-----TPVGASYNAVVHALCGQ 240

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+++ F   D+M   G  PD   Y  ++    K +    A  I   M      PN QT+
Sbjct: 241 FRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTF 300

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRA 198
             L+      G++     +   M A G       Y  LI    H   + RA
Sbjct: 301 TVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRA 351



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 53/117 (45%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           L    PT  +++ L+   ++ + +       D M+  G  P+V  YN LI    +     
Sbjct: 120 LGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVG 179

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
            A R+ +EM +   +P+  ++  +++A     +LD    I+ +MT  GA  +   +A
Sbjct: 180 AARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMTPVGASYNAVVHA 236



 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 105/271 (38%), Gaps = 38/271 (14%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           F+R +       P V VYN+L+    +       + +++ M+K  V+PN  TY  L+ A 
Sbjct: 113 FYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKAL 172

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
               ++     ++ +M   G   D+  +  +I+A   K+ R D+    + E+      ++
Sbjct: 173 CQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALC-KLDRLDEARGILAEMTPVGASYN 231

Query: 217 SV--ETSGNNAENEMMGVSKEELY---NLPTAEYVHRRGGFL-SRLLTVYHVAFHACAEL 270
           +V     G     E+  V  E ++      T  Y    G F  +R L +      ACA L
Sbjct: 232 AVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRM------ACAIL 285

Query: 271 K---------DVQAMETLLEMLKKDRKSPDV-----YIVMQN-----------IRCYLHS 305
                     +VQ    L++    D K  D      ++V +            IR   H 
Sbjct: 286 ARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHI 345

Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           GD+     VF     S+  P    Y+TL++G
Sbjct: 346 GDLKRALFVFSCMGKSDCLPDVRTYSTLIDG 376



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 75/180 (41%), Gaps = 1/180 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++ +  N   N   +NT++ SL    R     +V+  M   G  P    ++ L+ G  + 
Sbjct: 426 DKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFRE 485

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +D      +M  +GF   +  YN  IS   + +   +A+ +   M    ++P+  T+
Sbjct: 486 GNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTF 545

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++A    G +     ++  M A     +   Y  L++   ++  + DD    +++++
Sbjct: 546 NAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQ-HKLDDAMVYLLKML 604


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   +N+ + +L++  R      +  +M   GV      + S + G     
Sbjct: 517 EMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAG 576

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +       +M+  G  P V  Y   I  CG+    D+A+ +  EM    V PN  +Y 
Sbjct: 577 RWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYS 636

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             ++AC   G+ +   A++ +M A G   ++FCY   IT
Sbjct: 637 ATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAIT 675



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 64/151 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YNT +++     ++     +  DM   GV+P    ++++I    K           
Sbjct: 456 DACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALL 515

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G +PDV  +N  I+        D A+R+  EM +  V  +  TY   L   A A
Sbjct: 516 REMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHA 575

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+ +   +++R+M  AG      CY   I A
Sbjct: 576 GRWEQALSLLREMQGAGVSPTVICYTAAIRA 606



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 60/146 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R   A +A  Y++ +T L    R+     +  +M   GV PT   + + I    +  
Sbjct: 552 EMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVICYTAAIRACGEAG 611

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +  +      +M   G  P++  Y+  IS CGK    +Q + +  EM    + PN   Y 
Sbjct: 612 KGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYT 671

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
             +  C   GQ +   A  R M A+G
Sbjct: 672 AAITGCGIGGQWERAVATFRSMIASG 697



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N   YN  + + T    +    D+   M  + GV+P    ++ ++    K  + +     
Sbjct: 299 NVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEI 358

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
             +M   G  PDV  +   IS CG C  S++A+ IF EM++  V+PN  T+  +++AC A
Sbjct: 359 FREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIA 418

Query: 159 AGQLD 163
           AGQ +
Sbjct: 419 AGQWE 423



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           F R+     G  PDV  YN +++ CGK    ++AI IF EM +  +KP+  ++   ++AC
Sbjct: 325 FMRE---VGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISAC 381

Query: 157 AAAGQLDPVYAIVRDMTAAG 176
            + G  +   +I R+M  AG
Sbjct: 382 GSCGLSEEALSIFREMERAG 401



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%)

Query: 44  YNTVVTSL----TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YNTV+++        +   LLR+    M   G+ P    F+S I       R  D     
Sbjct: 495 YNTVISACGKCGEGDQALALLRE----MPERGLMPDVITFNSAIAALSNSGRPDDAVRLM 550

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G   D   Y+  ++        +QA+ +  EM+   V P    Y   + AC  A
Sbjct: 551 REMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVICYTAAIRACGEA 610

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G+ D    ++R+M  AG   + F Y+  I+A
Sbjct: 611 GKGDEALLLLREMPTAGVTPNLFSYSATISA 641



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 10/181 (5%)

Query: 20  RRFFVTSAGAEEYARRNYANNASE---------YNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           RR  V    AE    R   NNA           Y+  ++ +    R+    D+   M   
Sbjct: 94  RRILVELDKAELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAEL 153

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P     ++ +    K  R+Q+        +A+G   DV  YN  I  C    + + A
Sbjct: 154 GAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELA 213

Query: 131 IRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           + +  EM+ +Y +KPN  TY   +  C   G+ D   +++ +M   G  L    Y+ +  
Sbjct: 214 LSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFN 273

Query: 190 A 190
           A
Sbjct: 274 A 274



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 57/133 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  V+ +  +  +  L+  V  DM   G+ P    + S I  + +     +     
Sbjct: 737 NEQTYAAVILACGNGGQGHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLL 796

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+A G  P V+ YN  I+ CGK     +A+ + +EM    +  +  T    ++AC  A
Sbjct: 797 GEMEAAGVPPTVSCYNAAITACGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQKA 856

Query: 160 GQLDPVYAIVRDM 172
           G+      +V +M
Sbjct: 857 GRGVKAAGLVEEM 869



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 6/197 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           Y + V++L       L  ++  +M  + G++P    + ++I+    G +       +  M
Sbjct: 705 YTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDM 764

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            + G  P +  Y   I   G+C N  +A  +  EM+   V P    Y   + AC  +G+ 
Sbjct: 765 ASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAITACGKSGKW 824

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS--KGWS--SV 218
                ++ +M   G   D    +  I+A   K  R    A  + E++E +  KG    S+
Sbjct: 825 QEALDLLDEMPGKGLVRDSGTLSAAISA-CQKAGRGVKAAGLVEEMLEMAREKGGERDSL 883

Query: 219 ETSGNNAENEMMGVSKE 235
           E +G    N     S+E
Sbjct: 884 EGAGAAVPNPSTAASEE 900



 Score = 41.6 bits (96), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYA 167
           P+V  YN  I  C  C   ++A+ +   M++   V+P+  TY  ++ AC  AGQ +    
Sbjct: 298 PNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIE 357

Query: 168 IVRDMTAAGAGLDKFCYAGLITA 190
           I R+M+  G   D   +   I+A
Sbjct: 358 IFREMSEVGIKPDVISFTTAISA 380



 Score = 38.9 bits (89), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 90  SRLQDTFFFRD------QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
           SR+   F + +      +M   G +P+    N  +  CGK     +A+ +  + +   ++
Sbjct: 132 SRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIE 191

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYAGLITAHTNKIPRADDTA 202
            +  +Y C + AC   G  +   +++R+M A  G   +   Y   I     +  +AD+ A
Sbjct: 192 LDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKV-CGRCGKADEAA 250

Query: 203 TKIIEL 208
           + +IE+
Sbjct: 251 SLLIEM 256


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 29  AEEYAR----RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AE+  R    R    +   ++ ++ +L  + +     ++Y DM+  G+ PT   ++S+I 
Sbjct: 130 AEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMID 189

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G  K  RL D     D M +    PDV  ++ LI+   K K  D  + IF EM +  +  
Sbjct: 190 GFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVA 249

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           N  TY  L++     G LD    ++  M ++G   +   +  ++ +  +K
Sbjct: 250 NTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSK 299



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 54/139 (38%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR        YN+++     Q R    + + D M      P    F +LI G  K  R+ 
Sbjct: 174 RRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVD 233

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +      +M   G + +   Y  LI    +  + D A  +   M    V PN  T+  +L
Sbjct: 234 NGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSML 293

Query: 154 NACAAAGQLDPVYAIVRDM 172
            +  +  +L   +AI+ D+
Sbjct: 294 ASLCSKKELRKAFAILEDL 312



 Score = 41.2 bits (95), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 106/293 (36%), Gaps = 45/293 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T++  L  + R      + D M+ +G QP    + ++I G  K    +       +M+
Sbjct: 13  FTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNLLSKME 68

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                  V +YN +I    K  +   A  +F EM    + P+  TY  ++++   +G+  
Sbjct: 69  ETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWT 128

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               ++RDM       D   ++ LI A                 LV++ K   + E  G+
Sbjct: 129 DAEQLLRDMIERQINPDVVTFSALINA-----------------LVKEGKVSEAEEIYGD 171

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                                 + RRG F + +   Y+       +   +   + +L+ +
Sbjct: 172 ----------------------MLRRGIFPTTI--TYNSMIDGFCKQDRLNDAKRMLDSM 207

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
                SPDV      I  Y  +  +DNG ++F +            Y TL+ G
Sbjct: 208 ASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHG 260


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M++ G+ P    F +LI G  K  R+        QM 
Sbjct: 190 YSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 249

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LPD+  YN LI   G CK  D  QA  + ++M +  +KP+  TY  L++ C   G 
Sbjct: 250 SQSLLPDLITYNTLIY--GLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGV 307

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L   +   + +      LD   Y  LI+ 
Sbjct: 308 LVSAFEHRKRLIQENIRLDDVVYTALISG 336



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 129/315 (40%), Gaps = 22/315 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++          + + V+D +   G++P+   +++L+ G ++ 
Sbjct: 106 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRL 165

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 166 GVLDEGFRLKSAMLASGVQPDVYTYSVLIN--GLCKESKMDDADELFDEMLVKGLVPNGV 223

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D    +
Sbjct: 224 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 283

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--RLLTVYHVA 263
                  KG    + +     +   G  KE    +  + + HR+       RL  V + A
Sbjct: 284 -----SRKGLKPDKITYTTLID---GCCKE---GVLVSAFEHRKRLIQENIRLDDVVYTA 332

Query: 264 FHA--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
             +  C E + V A + L EML     +PD       I  +   GD+  G K+ ++    
Sbjct: 333 LISGLCQEGRSVDAEKMLREMLSVGL-NPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 391

Query: 322 EKFPPAELYATLVEG 336
              P    Y  L+ G
Sbjct: 392 GHVPSVVTYNVLMNG 406


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M+  G+ P    F +LI G  K  R+        QM 
Sbjct: 198 YSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 257

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 258 SQSLXPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD 315

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L+  +   + M      LD   Y  LI+ 
Sbjct: 316 LETAFEHRKRMIQEXIRLDDVAYTALISG 344



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 130/297 (43%), Gaps = 24/297 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++     +    + + V++ +   G++P+   F++L+ G ++ 
Sbjct: 114 EEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRL 173

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             + + F  ++ M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 174 GDMDEGFRLKNAMHASGVQPDVYTYSVLIN--GLCKESKMDDANEMFDEMLDKGLVPNGV 231

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEM 291

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 292 -----SMKGLKPDKITYTTLID---GCCKEG--DLETA-FEHRK-RMIQEXIRLDDVAYT 339

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           A     C E + + A + L EML    K PD       I  +   GD+  G K+ ++
Sbjct: 340 ALISGLCQEERYLDAEKVLREMLSVGLK-PDTGTYTMIINEFCKKGDVWTGSKLLKE 395



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M + G++P +  + +LI G  K   L+  F  R +M 
Sbjct: 268 YNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMI 327

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                 D   Y  LIS  G C+      A ++  EM    +KP+  TY  ++N     G 
Sbjct: 328 QEXIRLDDVAYTALIS--GLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGD 385

Query: 162 LDPVYAIVRDM 172
           +     ++++M
Sbjct: 386 VWTGSKLLKEM 396


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +      ++D+M+  G+ P    F +LI G  K  R+        QM 
Sbjct: 209 YSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 269 SQSLSPDLITYNTLIY--GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L+  +   + M      LD   Y  LI+ 
Sbjct: 327 LETAFEHRKRMIQENIRLDDVAYTALISG 355



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   GVQP    +  LI G  K S++ D     D+M   G +P+   +  LI+  G CKN
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIA--GHCKN 254

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G L   + ++ +M+  G   DK  Y
Sbjct: 255 RRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 314

Query: 185 AGLI 188
             LI
Sbjct: 315 TTLI 318



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 24/297 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++     +    + + V++ +   G++P+   F++L+ G ++ 
Sbjct: 125 EEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG 
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLIN--GLCKESKMDDANGLFDEMLDKGLVPNGV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L+       ++D    I + M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                  KG    + +     +   G  KE   +L TA + HR+   +   + +  VA+ 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GCCKEG--DLETA-FEHRK-RMIQENIRLDDVAYT 350

Query: 266 A-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           A     C E + + A + L EML    K PD       I  +   GD+  G K+ ++
Sbjct: 351 ALISGLCQEGRYLDAEKVLREMLSVGLK-PDTGTYTMIINEFCKKGDVWTGSKLLKE 406


>gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Cucumis sativus]
          Length = 1108

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++++     +   + +V+  M+  GV+P    + +LI G  + +++   F     M+
Sbjct: 523 YTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMR 582

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD  V+N LI+ CG+    D+A  +  EM  + + ++P+  T   L+ ACA AGQ
Sbjct: 583 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQ 642

Query: 162 LD---PVYAIVRDMTAAG 176
           +D    VY ++ D    G
Sbjct: 643 VDRAREVYKMIHDYKIKG 660



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           PT   F+ L+         +  F     ++  G   D  +Y  LIS CGK    D    +
Sbjct: 483 PTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEV 542

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--H 191
           F  M    V+PN  TY  L++ CA A Q+   + +   M +     D+  +  LITA   
Sbjct: 543 FHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQ 602

Query: 192 TNKIPRADDTATKI 205
           +  + RA D   ++
Sbjct: 603 SGAVDRAFDVLAEM 616



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y DM   GVQP      +LI       +L   F    + K  G    +  Y+ L+  C
Sbjct: 683 NIYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGAC 742

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
              KN  +A+ ++E++K  +++    T   L+ A +   QL     I+ +M   G   + 
Sbjct: 743 SNAKNWQKALALYEDLKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNN 802

Query: 182 FCYAGLITA 190
             Y+ L  A
Sbjct: 803 ITYSILTAA 811



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 49  TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108
           +S  S+R F ++R V +     G++    L+ +LI    K  ++   F    +M   G  
Sbjct: 497 SSQDSERAFQVVRLVQEA----GMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVE 552

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P+V  Y  LI  C +     +A  ++  M+   VKP+   +  L+ AC  +G +D  + +
Sbjct: 553 PNVHTYGALIDGCARAAQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 612

Query: 169 VRDMTA 174
           + +M A
Sbjct: 613 LAEMGA 618


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 131/304 (43%), Gaps = 18/304 (5%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           V+++L    R      ++++M  +G++P    ++ L+ G +K   L+D  F   +M+ +G
Sbjct: 297 VISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSG 356

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             PD   Y+ LI         + A  + +EM+   + PN   +  +L +    G+    +
Sbjct: 357 VSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSF 416

Query: 167 AIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE--LVEQSKGWSSVETSG 222
            ++++M  +G   D+  Y  +I      + +  A DT  K++   +   +  W+++    
Sbjct: 417 QVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCH 476

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
             AE   +    EEL+     E +  +G   S  +T +++  ++  E +    ++TL+  
Sbjct: 477 CKAE---LHERAEELF-----EEMMEKG--FSPCVTTFNIMINSFGEQERWDDVKTLMGN 526

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYT 342
           ++     P+V      I  Y  SG   +  +  ED   +   P + +Y  L+      Y 
Sbjct: 527 MRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALIN----AYA 582

Query: 343 PKGM 346
            KG+
Sbjct: 583 QKGL 586



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 2/159 (1%)

Query: 37  YANNASEYNTVVTSLTSQRRF--FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           Y ++   Y+ ++ SL    R    +L+ +Y ++  D ++    L + +IVG  K      
Sbjct: 215 YPSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNK 274

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              F   ++A+G  P  A    +IS  G      +A  IFEEMK   +KP  + Y  LL 
Sbjct: 275 AMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLK 334

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               AG L     IV +M  +G   D+  Y+ LI A++N
Sbjct: 335 GYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSN 373



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 2/152 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFF 98
           N   Y T++       RF    +  +DM   G++P+  ++++LI     KG   Q    F
Sbjct: 535 NVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAF 594

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R  M+A+   P +   N LI+  G+ +   +A  + + MK+ ++KP+  TY  L+ A   
Sbjct: 595 R-LMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIR 653

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + + V ++  +M  AG   D+   A L +A
Sbjct: 654 VDKFNKVPSVYEEMILAGCTPDRKARAMLRSA 685



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 117/284 (41%), Gaps = 18/284 (6%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           Q+ F +L+++ +     GV+P R  ++ +I    K S L       D+M + G  PD   
Sbjct: 413 QKSFQVLKEMKNS----GVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVT 468

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           +N LI    K +  ++A  +FEEM +    P   T+  ++N+     + D V  ++ +M 
Sbjct: 469 WNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMR 528

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE--QSKGWSSVETSGNNAEN--EM 229
           + G   +   Y  LI  +  K  R  D     IE +E  +S G     T  N   N    
Sbjct: 529 SLGLLPNVVTYTTLIDIY-GKSGRFSDA----IECLEDMKSAGLKPSSTMYNALINAYAQ 583

Query: 230 MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
            G+S++ +     A  + R       LL +  +      + +D +A   L  M + D K 
Sbjct: 584 KGLSEQAV----NAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLK- 638

Query: 290 PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           PDV      ++  +     +    V+E+ I +   P  +  A L
Sbjct: 639 PDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTPDRKARAML 682



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 5/148 (3%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            G L    F+ S    E  R   + +   Y+ ++ + ++  R+   R V  +M  + + P
Sbjct: 339 AGMLKDAEFIVS----EMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMP 394

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
              +F  ++         Q +F    +MK +G  PD   YN +I   GK    D A+  F
Sbjct: 395 NSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTF 454

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           ++M    ++P+  T+  L++ C    +L
Sbjct: 455 DKMLSEGIQPDTVTWNTLID-CHCKAEL 481



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 57/124 (45%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P      ++I       R+ +     ++MK NG  P    YN L+    K      A
Sbjct: 286 GLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDA 345

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             I  EM++  V P+  TY  L++A + AG+ +    ++++M A     + + ++ ++ +
Sbjct: 346 EFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILAS 405

Query: 191 HTNK 194
           + ++
Sbjct: 406 YRDR 409


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 133/359 (37%), Gaps = 49/359 (13%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y ++   YN ++  L      F    VY D++  G  P    F  LI G  K  +     
Sbjct: 23  YKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRAL 82

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            F   +      PDV ++N+LI    K  N DQA+++FE M+   V P+  TY  +++  
Sbjct: 83  EFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGL 142

Query: 157 AAAGQLDPVYAIVRDMTAAG--AGLDKFCYAGLITAHT---------------------- 192
             +G L+    ++ +M   G  +  D   Y  LI A                        
Sbjct: 143 CKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPA 202

Query: 193 ------NKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM-GVSKEELYNLPTAEY 245
                 N I  A   A +++E  E  K  S   +      N ++ G  K  +  LP A  
Sbjct: 203 PDVITYNSIIHALCVAGRVVEAAEILKTMSC--SPDLVTFNTLLDGFCKAGM--LPRALE 258

Query: 246 VHR---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
           V     R   L  ++T Y +  +    +  VQ    LLE + +    PDV      +   
Sbjct: 259 VLEEMCRENILPDVIT-YTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGL 317

Query: 303 LHSGDIDNGHKVFEDYICSEKF---------PPAELYATLVEGAMF-GYTPKGMQLAQD 351
             SG+I+  HK+ ++    E           PP   Y  ++ G +  G   K + L  D
Sbjct: 318 CKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISD 376



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 4/158 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L           +  D++  G  P    +++LI G  K +R+++     D+M 
Sbjct: 354 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 413

Query: 104 ANGFLP-DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           + G  P DV + + +  +C +    D A  +  EM +    PN   Y  L++    + ++
Sbjct: 414 SLGCFPNDVTLGSVVFGLC-RVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 472

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           D    ++  M   G  LD F Y  LI +  H  ++  A
Sbjct: 473 DDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEA 510



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 130/319 (40%), Gaps = 17/319 (5%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FF    + +G+  DV  YN+L+ +  K  +  +  ++++++      PN  T+  L+   
Sbjct: 13  FFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGN 72

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             AGQ       +R +       D + +  LI  H        D A K+ E +E S+   
Sbjct: 73  CKAGQATRALEFLRALDEFSVAPDVYIFNFLI--HGLFKDGNPDQAVKLFENMESSRVNP 130

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA--CAELKDVQ 274
            + T            + E+   L   E + RRGG  +  +  Y+   +A  C +  DV+
Sbjct: 131 DIFTYNTVISGLCKSGNLEKAREL--LEEMIRRGGKSAPDIVTYNTLINAGICKD-GDVE 187

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
               +L+ +K    +PDV      I     +G +    ++ +   CS   P    + TL+
Sbjct: 188 EALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNTLL 244

Query: 335 EG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393
           +G    G  P+ +++ ++    M   NI   P + +  +LV    + G    A Y+ + +
Sbjct: 245 DGFCKAGMLPRALEVLEE----MCRENIL--PDVITYTILVNGLCRVGQVQVAFYLLEEI 298

Query: 394 QARKITPSLPAVEAYYNGL 412
             +   P + A  +  +GL
Sbjct: 299 VRQGYIPDVIAYTSLVDGL 317



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 15/178 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++             +V ++M  + + P    +  L+ G  +  ++Q  F+  +++ 
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD-----------QAIRIFEEMKKYEVKPNGQTYVCL 152
             G++PDV  Y  L+   G CK+ +            A  I  EM    + P   TY  +
Sbjct: 300 RQGYIPDVIAYTSLVD--GLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIV 357

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIEL 208
           L      G +    +++ D+ A G   D   Y  LI      N++  A D A ++  L
Sbjct: 358 LGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASL 415



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 57/142 (40%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R Y  +   YNT++  L    R     D+ D+M   G  P      S++ G  +  R+ D
Sbjct: 380 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDD 439

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +    +M      P+V VY  LI    K    D A  + + M+   V  +   Y  L+ 
Sbjct: 440 AWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIV 499

Query: 155 ACAAAGQLDPVYAIVRDMTAAG 176
           +    G++    A+  +M A G
Sbjct: 500 SMIHGGRVAEAMAMYDEMVARG 521



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 10/183 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---------FLLRDVYDDMMLDGVQPTRDLFH 80
           EE  R+ Y  +   Y ++V  L                  R++  +M+   + P    ++
Sbjct: 296 EEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYN 355

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
            ++ G +K   +         + A G++PDV  YN LI    K     +A  + +EM   
Sbjct: 356 IVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASL 415

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
              PN  T   ++      G++D  +++V +M+      +   Y  LI     K  R DD
Sbjct: 416 GCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLC-KSDRMDD 474

Query: 201 TAT 203
              
Sbjct: 475 ACV 477



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 36/80 (45%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E +R+ +A N   Y +++  L    R      V D M   GV      +  LIV  + G 
Sbjct: 446 EMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGG 505

Query: 91  RLQDTFFFRDQMKANGFLPD 110
           R+ +     D+M A GFLPD
Sbjct: 506 RVAEAMAMYDEMVARGFLPD 525


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++D+M  +GV+P R  F+SLI    +G   +D+     +M+  G   D+  +N LI   
Sbjct: 292 DIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAV 351

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    + A  I   M+   + PN  TY  +++     G  +   ++  DM  +G   D+
Sbjct: 352 CKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDR 411

Query: 182 FCYAGLITAHTNKIPRADDT--ATKIIELV 209
             Y  LI  +  K+ R DD   A K +E V
Sbjct: 412 VSYNTLIDIYA-KLGRFDDALIACKDMERV 440



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +   Q ++     ++D M  +G+ P    + +LI    K    QD      + K
Sbjct: 449 YNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFK 508

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV +Y+ LI  C KC   + A+ + +EM +  ++PN  TY  L++A    GQ D
Sbjct: 509 RAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQAD 568

Query: 164 PVYAIVRDM 172
            + A+  +M
Sbjct: 569 KLEAVKANM 577



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 67/154 (43%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +N + N   Y+T++        F     +Y DM   GV+P R  +++LI    K  R  D
Sbjct: 370 KNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDD 429

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  M+  G   DV  YN LI   GK      A  +F++MK   + PN  TY  L++
Sbjct: 430 ALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALID 489

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + + AG    V  +  +   AG   D   Y+ LI
Sbjct: 490 SYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLI 523



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++       RF        DM   G++     +++LI    K  + +D     D+MK
Sbjct: 414 YNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMK 473

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P+V  Y+ LI    K         +F E K+  +KP+   Y  L+++C   G ++
Sbjct: 474 GEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVE 533

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
               ++++MT AG   +   Y  LI A+
Sbjct: 534 DAVVLLQEMTQAGIQPNIVTYNSLIDAY 561



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 1/159 (0%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS-RL 92
           +  + NN   Y+ +V++     R      V+  M   G +P    ++++I    KG   L
Sbjct: 228 KAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDL 287

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           +      D+M+  G  PD   +N LI+VC +    + + R+F EM++  ++ +  T+  L
Sbjct: 288 KQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTL 347

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           ++A    GQ++   +I+  M       +   Y+ +I  +
Sbjct: 348 IDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGY 386



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 1/147 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++++L    +  +  DV++     G       + +++    +  R ++       MK 
Sbjct: 204 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 263

Query: 105 NGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            G  P++  YN +I  CGK   +  QA+ IF+EM+K  V+P+  T+  L+  C+  G  +
Sbjct: 264 AGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWE 323

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +  +M   G   D F +  LI A
Sbjct: 324 DSQRVFAEMQRRGIEQDIFTFNTLIDA 350



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 67/162 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR    +   +NT++ ++    +  L   +   M    + P    + ++I G  K  
Sbjct: 331 EMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLG 390

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             ++       MK +G  PD   YN LI +  K    D A+   ++M++  +K +  TY 
Sbjct: 391 CFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYN 450

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            L++A    G+      +   M   G   +   Y+ LI +++
Sbjct: 451 ALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYS 492


>gi|357495179|ref|XP_003617878.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519213|gb|AET00837.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 203

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 9/135 (6%)

Query: 63  VYDDMMLDGVQPTRDLFHSLI-----VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           V++ M  DG  PT   ++S++     +G M  SR+   F+    MK NG +PD+ +YN L
Sbjct: 42  VFNKMQRDGYTPTLVTYNSILNVYGKMG-MPWSRVTAIFY---SMKTNGVVPDLYIYNTL 97

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           I+ C +    ++A+ +F+ +K     P+  TY  LL+  A   +      +++DM + G 
Sbjct: 98  ITCCRQGSLYEEAVNVFDRIKSAGFVPDRVTYNALLDVFAKVRRPKEALQVLKDMESNGF 157

Query: 178 GLDKFCYAGLITAHT 192
             +   Y  LI+AH 
Sbjct: 158 SPNVITYDSLISAHV 172



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++  M  +GV P   ++++LI    +GS  ++     D++K+ GF+PD   YN L+ V  
Sbjct: 78  IFYSMKTNGVVPDLYIYNTLITCCRQGSLYEEAVNVFDRIKSAGFVPDRVTYNALLDVFA 137

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           K +   +A+++ ++M+     PN  TY  L++A    G L  V  +   M   G
Sbjct: 138 KVRRPKEALQVLKDMESNGFSPNVITYDSLISAHVRGGLLKEVSRLKVQMVEKG 191


>gi|13324802|gb|AAK18850.1|AC082645_20 unknown protein [Oryza sativa Japonica Group]
          Length = 825

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMK 88
           E +RR   +N   YN  + +    RR  +   ++  M         D+   +SLI   + 
Sbjct: 215 EMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIRALVV 274

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQ 147
           G+R+ D     D+MK+ G  PDV  Y  ++  C K    D A+R+F+EM+  Y VK +  
Sbjct: 275 GARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVKGDAV 334

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            Y  LL+    A +LD        M A G
Sbjct: 335 VYNSLLDGLFKAKKLDEACGFFETMVADG 363



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 1/146 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N+++ +L    R      VYD+M   G++P    + +++ G  K  R+ D      +M+
Sbjct: 265 HNSLIRALVVGARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMR 324

Query: 104 AN-GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            + G   D  VYN L+    K K  D+A   FE M    ++ +  T+  +++     G+ 
Sbjct: 325 GSYGVKGDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSASTHNTVIDGLFKNGRA 384

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +    +  D+   G  LD   Y+ ++
Sbjct: 385 EAACRLFYDLRRKGQLLDGIAYSIMV 410



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ--PTRDLFHSLIV---GTMKGSRLQDTFFF 98
           YN+++TS   +     L+ V+  +   G Q  P     ++LI+   G M  + +  +   
Sbjct: 613 YNSLMTSFVKKG---YLKQVWAILHERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSII- 668

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
             ++   G   D+ +YN LI+  GK    D+A  + E++    +KP+  T+  L+N  A 
Sbjct: 669 -SELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAK 727

Query: 159 AGQLDPVYAIVRDMTAAG 176
           AG+L      +R M A G
Sbjct: 728 AGRLKEADKYLRKMIAEG 745



 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 50/115 (43%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N+ + YN ++  L    +  +   +  ++   GV     ++++LI    K  ++ +    
Sbjct: 643 NDIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSL 702

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +Q+   G  PDV  +N LI++  K     +A +   +M    + PN  T   LL
Sbjct: 703 LEQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGIAPNYATETILL 757



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A   NT ++   ++ +  +   +++     G + T   ++SL+   +K   L+  +   
Sbjct: 574 DADMVNTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAIL 633

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +        D+A YN +I   G+   ++ A  I  E+ K  V  +   Y  L+N    A
Sbjct: 634 HERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKA 693

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAHTNKIPRADDTATKII 206
           G++D   +++  +   G   D   +  L  I A   ++  AD    K+I
Sbjct: 694 GKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMI 742


>gi|326509863|dbj|BAJ87147.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 757

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 83/172 (48%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            A  YN V+ ++  + R  + R VY+ M+ DGV PT   +++LI G     +++      
Sbjct: 216 TALSYNAVLKAILCRGREAMARRVYNAMIADGVAPTLSTYNTLIWGFGLCKKMESAVRVF 275

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK +G  PDV  YN L++   +  + + A ++F+EM +  ++ N  +Y  ++     A
Sbjct: 276 GDMKGHGVAPDVTTYNTLLNAWVRKGDLESARKVFDEMPEAGLERNSISYNVMIKGYVDA 335

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
            +++    +  +M   G  L +  +A L+    +   +A +    + ++ E+
Sbjct: 336 NKVEEALGLFTEMGEKGLRLTEKTFAVLMPGLCDDEGKAAEARKAVADMAER 387


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 113/277 (40%), Gaps = 12/277 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +YD M  + + P+    + +I G  K  R  ++     ++   GF+P    YN +I    
Sbjct: 525 LYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFV 584

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + A+ ++ EM K  V PN  TY  L+N    +  +D    ++ +M   G  LD  
Sbjct: 585 KEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVT 644

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            Y  LI     K    +  A++++  +++      V  S N      M     +L N+  
Sbjct: 645 VYCALIDGFCRKGDMVN--ASQLLSELQE------VGLSPNKVVYSSMISGFRKLQNMEA 696

Query: 243 AEYVHRR---GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
           A ++H+R    G    L     +      E K + A E   EML K    PD+      I
Sbjct: 697 ALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIM-PDLITYSVLI 755

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               + G ++N  K+ ED       P   +Y TL+ G
Sbjct: 756 HGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITG 792



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 120/295 (40%), Gaps = 12/295 (4%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++  L    R    +D    ++ +G  PT   ++ +I G +K   +        +M  
Sbjct: 542 NIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCK 601

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  P+V  Y  LI+   K  N D A+++ +EMK   ++ +   Y  L++     G +  
Sbjct: 602 IGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVN 661

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII-ELVEQSKGWSSVETS 221
              ++ ++   G   +K  Y+ +I+       +  A     ++I E +       +   S
Sbjct: 662 ASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLIS 721

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
           G   E +++  S  ELY    AE + +  G +  L+T Y V  H       ++  + +LE
Sbjct: 722 GLLKEGKLLFAS--ELY----AEMLAK--GIMPDLIT-YSVLIHGLCNKGQLENAQKILE 772

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            + +   +P V+I    I  +   G++    ++  + +     P    Y  LV G
Sbjct: 773 DMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNG 827



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+++ L  + +     ++Y +M+  G+ P    +  LI G     +L++     + M 
Sbjct: 716 YTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMD 775

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                P V +YN LI+   K  N  +A R+  EM    + P+  TY  L+N     G L
Sbjct: 776 RKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 106/280 (37%), Gaps = 50/280 (17%)

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           LLR++ D     G  P   +F  +I   MK  ++ +    + +M + G   +V V   L+
Sbjct: 281 LLREMRDK----GWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLM 336

Query: 119 SVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
              G CK  D   A+ +F++M +  + PN  TY  ++  C   G +D  Y I   M    
Sbjct: 337 K--GYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKD 394

Query: 177 AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE 236
                F    LI  +     R+ + A+K+ +                  E    G++   
Sbjct: 395 ISPTVFNVNSLIRGYLK--ARSPEEASKLFD------------------EAVACGIANVF 434

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVM 296
            YN             LS L          C E K  +A     +M++K  + P V    
Sbjct: 435 TYN-----------SLLSWL----------CKEGKMSEACSIWEKMVRKGVR-PSVVSYN 472

Query: 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             I  +   GD+D+ + VF + +     P    Y+ L++G
Sbjct: 473 NMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDG 512



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y+ M    + PT    +SLI G +K    ++     D+  A G + +V  YN L+S  
Sbjct: 385 EIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACG-IANVFTYNSLLSWL 443

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A  I+E+M +  V+P+  +Y  ++      G +D    +  +M   G   + 
Sbjct: 444 CKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNL 503

Query: 182 FCYAGLITAHTNK 194
             Y+ L+  +  K
Sbjct: 504 ITYSVLMDGYFKK 516



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 2/152 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+++++     +       ++  M+ +G+     ++ +LI G +K  +L       
Sbjct: 677 NKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELY 736

Query: 100 DQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            +M A G +PD+  Y+ LI  +C K    + A +I E+M +  + P    Y  L+     
Sbjct: 737 AEMLAKGIMPDLITYSVLIHGLCNK-GQLENAQKILEDMDRKCMTPTVFIYNTLITGHFK 795

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            G L   + +  +M   G   D   Y  L+  
Sbjct: 796 EGNLQEAFRLHNEMLDKGLVPDDTTYDILVNG 827


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 69/145 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+  L +       + + + M+  G  P    F++LIV     ++L++      ++ 
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELT 398

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  +N LI+   K  +   A+R+FEEMK     P+  TY  L++   ++G+L 
Sbjct: 399 VKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLA 458

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++++M  +G       Y  +I
Sbjct: 459 KALDLLKEMEVSGCPQSTVTYNTII 483



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  +NT++  L +  R     ++ D M+ +G+QP    ++S++    K   +       
Sbjct: 510 NAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADIL 569

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M ANGF  DV  Y  LI+   K + +  A+++   M+   +KP  + Y  ++ +    
Sbjct: 570 QTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRG 629

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCY 184
                  ++ R+MT  G   D F Y
Sbjct: 630 NNGRDALSLFREMTEVGGPPDAFTY 654



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +RR     +V+D M + G+      F++LI G     R+ D     DQM 
Sbjct: 479 YNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMI 538

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+   YN +++   K  N  +A  I + M     + +  TY  L+N    A +  
Sbjct: 539 SEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQ 598

Query: 164 PVYAIVRDMTAAG 176
               ++R M   G
Sbjct: 599 AALKLLRGMRMKG 611



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L S  +     D+  +M + G   +   ++++I G  K  R+++     DQM 
Sbjct: 444 YNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMD 503

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   +   +N LI      +  D A  + ++M    ++PN  TY  +L      G + 
Sbjct: 504 VTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNIS 563

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               I++ MTA G  +D   YA LI
Sbjct: 564 KAADILQTMTANGFEVDVVTYATLI 588



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 141/374 (37%), Gaps = 58/374 (15%)

Query: 47  VVTSLTSQRRFFLLRDVYD------DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           V + + S  R  L  D +D      DM   GVQ   ++++ L+    +GS+++       
Sbjct: 128 VQSFIGSYARLQLFDDAFDLVSNQLDMF--GVQANTEVYNHLLTVLAEGSKIKLLESAYT 185

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M + G  PDV  +N +I    + + +  A+ + EEM   +V P+  T+  L+      G
Sbjct: 186 EMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEG 245

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
            ++    +   M+  G          LI  +  K+ R  D                    
Sbjct: 246 SIEAALRLKARMSEMGCSPTSVTVNVLINGYC-KLGRVGDA------------------- 285

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                    +G  ++E+ +           GF    +T        C       A++ L 
Sbjct: 286 ---------LGYIQQEIAD-----------GFEPDRVTFSTFVNGLCQNGHVDHALKVLG 325

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
            ML++  + PDVY     I C  ++G+++    +    + S   P    + TL+      
Sbjct: 326 LMLQEGCE-PDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALC-- 382

Query: 341 YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
            T   ++ A D    +  +   LSP + +  +L+ A  K G    A  +++ M++   TP
Sbjct: 383 -TENQLEEALDLARELTVKG--LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTP 439

Query: 401 SLPAVEAYYNGLKD 414
                E  YN L D
Sbjct: 440 D----EVTYNILID 449



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + + +NT++ +L ++ +     D+  ++ + G+ P    F+ LI    K           
Sbjct: 370 DTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLF 429

Query: 100 DQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           ++MK++G  PD   YN LI ++C   K + +A+ + +EM+      +  TY  +++    
Sbjct: 430 EEMKSSGCTPDEVTYNILIDNLCSSGKLA-KALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
             +++    +   M   G G +   +  LI    N   R DD A    ELV+Q
Sbjct: 489 RRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNA-ERIDDAA----ELVDQ 536



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 111/304 (36%), Gaps = 22/304 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++T L    +  LL   Y +M   G++P    F+++I    +  + +      
Sbjct: 160 NTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLML 219

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M +    PD   +  L+    +  + + A+R+   M +    P   T   L+N     
Sbjct: 220 EEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKL 279

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G++      ++   A G   D+  ++  +           D A K++ L+ Q      V 
Sbjct: 280 GRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQN--GHVDHALKVLGLMLQEGCEPDVY 337

Query: 220 TSG-------NNAE-NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
           T         NN E  E  G+  + +             G L    T   +    C E +
Sbjct: 338 TYSTVINCLCNNGELEEAKGIVNQMV-----------DSGCLPDTTTFNTLIVALCTENQ 386

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
             +A++   E+  K   SP+VY     I      GD     ++FE+   S   P    Y 
Sbjct: 387 LEEALDLARELTVKGL-SPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYN 445

Query: 332 TLVE 335
            L++
Sbjct: 446 ILID 449



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 1/138 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++T    Q       D+   M  +G +     + +LI G  K  R Q      
Sbjct: 545 NNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLL 604

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY-VCLLNACAA 158
             M+  G  P    YN +I    +  N   A+ +F EM +    P+  TY +     C  
Sbjct: 605 RGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRG 664

Query: 159 AGQLDPVYAIVRDMTAAG 176
            G +   +  + +M   G
Sbjct: 665 GGPIKEAFDFLVEMADNG 682



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 2/174 (1%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A E   +  + N   +N ++ +L       L   ++++M   G  P    ++ LI     
Sbjct: 394 ARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCS 453

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             +L        +M+ +G       YN +I    K +  ++A  +F++M    +  N  T
Sbjct: 454 SGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAIT 513

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADD 200
           +  L++    A ++D    +V  M + G   +   Y  ++T +  +  I +A D
Sbjct: 514 FNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAAD 567


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 84  VGTMKG-SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           +G +K  S L D +   ++MK +G LPD   YN LIS  G+    D+AI+IFEE++  + 
Sbjct: 463 LGKLKQISPLHDLY---EKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDY 519

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
           KP+  +Y  L+N     G LD  +   ++M   G   D   Y+ LI     T+K+  A
Sbjct: 520 KPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMA 577



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 130/310 (41%), Gaps = 21/310 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  ++ +  +   +N ++ +L           V++DM     +P    +  +I  T K  
Sbjct: 236 EMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIG 295

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +  ++    ++M   G+ P+V  YN +I      +  D+AI +F +M + E +P+  TY 
Sbjct: 296 KPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMVEKECRPSEFTYS 355

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            +L+  A   +L  +  +V     +   + +  YA L+     K+  A +       +  
Sbjct: 356 VILHLLATERKLHKLDEVVE---VSKKYMSRSIYAYLVRT-LKKLGHASEAHRLFCNM-- 409

Query: 211 QSKGWSSVETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
               W+  E    +A   M+      G + E +  L     +H +G  +S    +Y+  F
Sbjct: 410 ----WNCHERGDRDACVSMLECLCSAGKTTEAIDLLGK---IHEKG--VSVDTVMYNTVF 460

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
            A  +LK +  +  L E +K+D   PD +     I  +  +G +D   K+FE+   S+  
Sbjct: 461 SALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYK 520

Query: 325 PPAELYATLV 334
           P    Y +L+
Sbjct: 521 PDTCSYNSLI 530



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 6/146 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV ++L   ++   L D+Y+ M  DG  P    ++ LI    +  ++ +     ++++
Sbjct: 456 YNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELE 515

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            + + PD   YN LI+  GK  + D+A   F+EM +  + P+  TY  L+       +++
Sbjct: 516 DSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVE 575

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT 189
               +  +M A G      CY  ++T
Sbjct: 576 MACRLFDEMLAEG------CYPNIVT 595



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 53/123 (43%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++ T   +  L+   ++    +  F    +MK  G + D+  +N L+    K    D A
Sbjct: 206 GLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHA 265

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            ++FE+MK+   +P+  TY  ++      G+ D    +  +M   G   +   Y  +I A
Sbjct: 266 YKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQA 325

Query: 191 HTN 193
             N
Sbjct: 326 LAN 328



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S     +      +++++     +P    ++SLI    K   L +      +M 
Sbjct: 491 YNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMC 550

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI   GK    + A R+F+EM      PN  TY  LL+    +G+  
Sbjct: 551 EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTA 610

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   +   G   D   Y+ L
Sbjct: 611 EAVDLYAKLKQQGLIPDSITYSVL 634



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT--RDLF-HSLIVGTMKGSRLQDT 95
           N ASE    + S +   RFF             + P    D F +S I+  +  S L D 
Sbjct: 108 NEASEILKSLNSPSLALRFF--------HFCPSLSPNFHHDCFTYSRIILILSKSNLPDR 159

Query: 96  FFFR----DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           F        +M+ NG    ++  N LI   G  +NS+   +    +KK+ ++  G TY C
Sbjct: 160 FHLARSIVSEMERNGVRGSISTVNILI---GFYENSEDLQKCIGLIKKWGLRMTGYTYKC 216

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           L+ A   +   +  +A+  +M   G  LD F +  L+ A
Sbjct: 217 LVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDA 255


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L   +       V+  M+  GV+P    ++++I G  K   +        QM 
Sbjct: 298 YNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI 357

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   Y  +I    K ++ D+A  +F++M    VKPN  TY CL++   + GQ +
Sbjct: 358 DKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWE 417

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
            V   +++M+A     D F Y  L+
Sbjct: 418 EVVQRIKEMSAHDLEPDVFTYGLLL 442



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 4/140 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N++V  L +  ++  + +++ +M+  G++P    F++++    K  R+ +     
Sbjct: 574 NNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLI 633

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D M   G  PDV  YN LI   G C  S  D+A+++ + M    +KPN  +Y  LL+   
Sbjct: 634 DSMVCMGLKPDVISYNTLID--GHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYC 691

Query: 158 AAGQLDPVYAIVRDMTAAGA 177
            AG++D  Y + R+M   G 
Sbjct: 692 KAGRIDNAYCLFREMLRKGV 711



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 120/314 (38%), Gaps = 20/314 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   +    N   YNT++  L   +   +   V+  M+  GV+P+   ++++I G  K 
Sbjct: 249 QQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKA 308

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +        QM   G  PD   YN +I    K +  D+A  +F++M    VKP+  TY
Sbjct: 309 QAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTY 368

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++    A  +D    + + M   G   +   Y  LI  +         +  +  E+V
Sbjct: 369 TIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYL--------STGQWEEVV 420

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL-------LTVYHV 262
           ++ K     E S ++ E ++        Y     +    R  F S +       +T+Y +
Sbjct: 421 QRIK-----EMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGI 475

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
             H   +   +  M  LL ++  +  SP+  I    I  Y     ID    +F       
Sbjct: 476 MLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQG 535

Query: 323 KFPPAELYATLVEG 336
             P    Y TL++ 
Sbjct: 536 LSPNVVTYGTLIDA 549



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 146/370 (39%), Gaps = 13/370 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++  L   +       V+  M+  GV+P    ++ LI G +   + ++      +M 
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMS 427

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+   PDV  Y  L+    K    ++A  +F+ M +  +KP+   Y  +L+     G L 
Sbjct: 428 AHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALS 487

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
            ++ ++  M A G   +   +  +I A+  +    D+     I++ +Q  G S    +  
Sbjct: 488 EMHDLLNLMVANGISPNHRIFNTVICAYAKR-AMIDEVMHIFIKMKQQ--GLSPNVVTYG 544

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
              + +  + + +   L   + ++   G     +    + +  C   K  +  E  LEML
Sbjct: 545 TLIDALCKLGRVDDAVLQFNQMINE--GVTPNNVVFNSLVYGLCTVDKWEKVEELFLEML 602

Query: 284 KKDRKSPDVYIVMQNIRCYL-HSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYT 342
            +  + PD+ +    + C L   G +    ++ +  +C    P    Y TL++G  F   
Sbjct: 603 NQGIR-PDI-VFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASR 660

Query: 343 PKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
              M  A   L  M S    L P + S   L+    K+G    A  ++  M  + +TP +
Sbjct: 661 ---MDEAVKLLDGMVSAG--LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGV 715

Query: 403 PAVEAYYNGL 412
                  NGL
Sbjct: 716 ETYNTILNGL 725



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS---RLQDTFFFRD 100
           YN V+    ++ +      ++ +M   GV P    ++++I G  K     R +D F    
Sbjct: 196 YNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVF---Q 249

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           QM   G  P+   YN +I    K +  D A  +F++M    VKP+  TY  +++    A 
Sbjct: 250 QMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQ 309

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
            +D    + + M   G   D   Y  +I        I +A+    ++I+
Sbjct: 310 AVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMID 358


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Glycine max]
          Length = 1113

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 71/163 (43%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE        N + YN ++          +  D++  M+ +G++P    +  L+      
Sbjct: 917  EEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMT 976

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             R+ D   + +++K  G  PD   YN +I+  GK +  ++A+ +F EMK   + P   TY
Sbjct: 977  GRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTY 1036

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
              L+     AG +D    +  ++   G   + F Y  LI  H+
Sbjct: 1037 NALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHS 1079



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 6/294 (2%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            N   YN ++ +    +R   L ++Y++M+  G +P     + +I   +K + +       
Sbjct: 822  NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             ++ +  F P    Y  LI    K   S++A++IFEEM  Y+ KPN   Y  L+N    A
Sbjct: 882  YEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKA 941

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            G ++    + + M   G   D   Y  L+        R DD      EL  +  G     
Sbjct: 942  GNVNIACDLFKRMIKEGIRPDLKSYTILVEC-LFMTGRVDDAVHYFEEL--KLTGLDPDT 998

Query: 220  TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
             S N   N  +G S+     L     +  RG  +S  L  Y+           V     +
Sbjct: 999  VSYNLMING-LGKSRRLEEALSLFSEMKNRG--ISPELYTYNALILHFGNAGMVDQAGKM 1055

Query: 280  LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             E L+     P+V+     IR +  SG+ D    VF+  +     P A  +A L
Sbjct: 1056 FEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 140/350 (40%), Gaps = 48/350 (13%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASE--------YNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           G  +F+   G  + A + Y    SE        Y+ ++ +L  +R    + D+ ++M   
Sbjct: 197 GLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETL 256

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++P    +   I    +  R+ D +     M+  G  PDV  Y  LI         D+A
Sbjct: 257 GLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKA 316

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             ++ +M+    KP+  TY+ L++     G L+ V     +M A G   D   Y  L+ A
Sbjct: 317 KELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEA 376

Query: 191 --HTNKIPRADDT--ATKIIELVEQSKGWSSVETSG--------------NNAENEMMGV 232
              + K+ +A D     ++  +V     ++++  SG              NN E+  +GV
Sbjct: 377 LCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTL-ISGLLNLRRLDEALELFNNMES--LGV 433

Query: 233 SKE--------ELYN--------LPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
           +          + Y         L T E + +RG   S  +   + + ++ AE+  ++  
Sbjct: 434 APTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPS--IAACNASLYSLAEMGRIREA 491

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
           + +   +     SPD       ++CY  +G ID   K+  + + SE   P
Sbjct: 492 KDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEML-SEGCEP 540



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 20/300 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ +L +  +    +++Y  M     +P    + +L+        L+    F  +M+
Sbjct: 300 YTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEME 359

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G+ PDV  Y  L+    K    DQA  + + M+   + PN  TY  L++      +LD
Sbjct: 360 ADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLD 419

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI---PRADDTATKIIELVEQSKGWSSVET 220
               +  +M + G     + Y  L   +  K+    +A DT  K+     + +G      
Sbjct: 420 EALELFNNMESLGVAPTAYSYV-LFIDYYGKLGDPEKALDTFEKM-----KKRGIMPSIA 473

Query: 221 SGNNAENEM--MGVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
           + N +   +  MG  +E  +++N      +H  G  LS     Y++     ++   +   
Sbjct: 474 ACNASLYSLAEMGRIREAKDIFN-----DIHNCG--LSPDSVTYNMMMKCYSKAGQIDKA 526

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             LL  +  +   PD+ +V   I     +G +D   ++F      +  P    Y  L+ G
Sbjct: 527 TKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITG 586



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 53/127 (41%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE        +   YN ++  L   RR      ++ +M   G+ P    +++LI+     
Sbjct: 987  EELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNA 1046

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +       ++++  G  P+V  YN LI    K  N D+A  +F++M      PN  T+
Sbjct: 1047 GMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106

Query: 150  VCLLNAC 156
              L N C
Sbjct: 1107 AQLPNKC 1113



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 66/159 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  +R    + +  N  + SL    R    +D+++D+   G+ P    ++ ++    K 
Sbjct: 461 EKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKA 520

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++        +M + G  PD+ V N LI    K    D+A ++F  +K  ++ P   TY
Sbjct: 521 GQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTY 580

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+      G+L     +   M  +G   +   +  L+
Sbjct: 581 NILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALL 619



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105
           ++  L  Q++    + ++D      G  PT + ++ L+ G +  +  +       +MK  
Sbjct: 758 LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNA 817

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ---- 161
           G  P++  YN L+   GK K  D+   ++ EM     KPN  T+  +++A   +      
Sbjct: 818 GCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKA 877

Query: 162 LDPVYAIV 169
           LD  Y I+
Sbjct: 878 LDLYYEII 885



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 128/322 (39%), Gaps = 25/322 (7%)

Query: 97   FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             F    K+ G  P    YN L+     C  ++ A+++F EMK     PN  TY  LL+A 
Sbjct: 774  LFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAH 833

Query: 157  AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKG 214
              + ++D ++ +  +M   G   +   +  +I+A   +N I +A D   +II     S  
Sbjct: 834  GKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEII-----SGD 888

Query: 215  WSSVETSGNNAENEMMGVSKEE-----LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
            +S    +       ++   + E        +P  +Y  +          +Y++  +   +
Sbjct: 889  FSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMP--DYQCKPN------CAIYNILINGFGK 940

Query: 270  LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
              +V     L + + K+   PD+      + C   +G +D+    FE+   +   P    
Sbjct: 941  AGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVS 1000

Query: 330  YATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
            Y  ++ G   G + + ++ A      M +R I  SP + +   L+     +G    A  +
Sbjct: 1001 YNLMING--LGKSRR-LEEALSLFSEMKNRGI--SPELYTYNALILHFGNAGMVDQAGKM 1055

Query: 390  WDLMQARKITPSLPAVEAYYNG 411
            ++ +Q   + P++    A   G
Sbjct: 1056 FEELQFMGLEPNVFTYNALIRG 1077


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D+MM DG+QPT+  + SLI    + ++ ++     +++   G  PD+ + N L+   G
Sbjct: 419 LHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMD--G 476

Query: 123 KCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C   N D+A  + +EM    + P+  TY CL+      G+ +    ++ +M   G   D
Sbjct: 477 HCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 536

Query: 181 KFCYAGLITAHTNK 194
              Y  LI+ ++ K
Sbjct: 537 HISYNTLISGYSKK 550



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 7/177 (3%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R    +N   +N ++  L  + +    +     M + G++PT   +++L+ G     R++
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                  +MK+ GF PD+  YN ++S +C    N  +A  +  EMK+  + P+  +Y  L
Sbjct: 278 GARLIISEMKSKGFQPDMQTYNPILSWMC----NEGRASEVLREMKEIGLVPDSVSYNIL 333

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
           +  C+  G L+  +A   +M   G     + Y  LI      NKI  A+    +I E
Sbjct: 334 IRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE 390



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L  + +F   R++  +M   G++P    +++LI G  K    +  F  RD+M 
Sbjct: 505 YNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEML 564

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           + GF P +  YN L+    K +  + A  +  EMK   + PN  ++  ++ A
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEA 616



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 5/178 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   + +  +   YN +++ + ++ R     +V  +M   G+ P    ++ LI G     
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNG 341

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L+  F +RD+M   G +P    YN LI         + A  +  E+++  +  +  TY 
Sbjct: 342 DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKII 206
            L+N     G     +A+  +M   G    +F Y  LI      NK   AD+   K++
Sbjct: 402 ILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVV 459



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V   + + R    R +  +M   G QP    ++ ++       R  +      +MK
Sbjct: 263 YNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVL---REMK 319

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD   YN LI  C    + + A    +EM K  + P   TY  L++      +++
Sbjct: 320 EIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIE 379

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
               ++R++   G  LD   Y  LI  +
Sbjct: 380 AAEILIREIREKGIVLDSVTYNILINGY 407



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R F LL+++  DMM   + P    ++ L+ G     + ++      +MK  G  PD   Y
Sbjct: 485 RAFSLLKEM--DMM--SINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISY 540

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N LIS   K  ++  A  + +EM      P   TY  LL   +   + +    ++R+M +
Sbjct: 541 NTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKS 600

Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDT 201
            G   +   +  +I A +N   +  D+
Sbjct: 601 EGIVPNDSSFCSVIEAMSNLDAKKSDS 627



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 44  YNTVVTSLTSQRRF----FLLRDVYDD-MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           YNT++  L  + +      L+R++ +  ++LD V      ++ LI G  +    +  F  
Sbjct: 365 YNTLIHGLFMENKIEAAEILIREIREKGIVLDSVT-----YNILINGYCQHGDAKKAFAL 419

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D+M  +G  P    Y  LI V  +   + +A  +FE++    +KP+      L++   A
Sbjct: 420 HDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCA 479

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            G +D  ++++++M       D   Y  L+
Sbjct: 480 IGNMDRAFSLLKEMDMMSINPDDVTYNCLM 509


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 104/268 (38%), Gaps = 45/268 (16%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G QP    F +LI G     ++ +     D+M   GF PDV  Y  LI+   K  N+  A
Sbjct: 126 GHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           IR+   M +   +PN   Y  ++++     Q+   + +  +M   G   D F Y  LI A
Sbjct: 186 IRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHA 245

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
             N              L E    W  V T      NEM+                    
Sbjct: 246 LCN--------------LCE----WKHVAT----LLNEMVD------------------S 265

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDI 308
             +  +++   V    C E K  +A + + +M+++  + P+V  Y  + +  C L   ++
Sbjct: 266 KIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE-PNVVTYTALMDGHCLL--SEM 322

Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEG 336
           D   KVF+  +C    P    Y TL+ G
Sbjct: 323 DEAVKVFDTMVCKGCMPNVISYNTLING 350



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NTVV +L  + +     DV D M+  GV+P    + +L+ G    S + +     D M 
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMV 333

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P+V  YN LI+   K +  D+A+ +F EM + E+ P+  TY  L++      +L 
Sbjct: 334 CKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQ 393

Query: 164 PVYAIVRDMTAAG 176
              A+  +M A  
Sbjct: 394 DAIALFHEMVACS 406



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 1/179 (0%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
            ++N   N   YNT++ SL   R+     +++ +M+  G+ P    ++SLI         
Sbjct: 193 VQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEW 252

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           +      ++M  +  +PDV  +N ++    K     +A  + ++M +  V+PN  TY  L
Sbjct: 253 KHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTAL 312

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           ++      ++D    +   M   G   +   Y  LI  +  KI R D       E+  Q
Sbjct: 313 MDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYC-KIQRIDKAMYLFGEMCRQ 370



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 9/137 (6%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D M+  G  P    +++LI G  K  R+    +   +M     +PD   Y+ LI    
Sbjct: 328 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 387

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR---------DMT 173
             +    AI +F EM      PN  TY  LL+       L    A+++         D+ 
Sbjct: 388 HVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 447

Query: 174 AAGAGLDKFCYAGLITA 190
                +D  C AG + A
Sbjct: 448 VNNIAIDGMCRAGELEA 464



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 2/126 (1%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCK 125
           M+    QP    ++++I    K  ++ + F    +M   G  PD+  YN LI ++C  C+
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 251

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
               A  +  EM   ++ P+  ++  +++A    G++   + +V  M   G   +   Y 
Sbjct: 252 WKHVA-TLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYT 310

Query: 186 GLITAH 191
            L+  H
Sbjct: 311 ALMDGH 316



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 2/147 (1%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D M+ +G +P    + +LI G  K             M      P+V  YN +I    
Sbjct: 153 LFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLC 212

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K +   +A  +F EM    + P+  TY  L++A     +   V  ++ +M  +    D  
Sbjct: 213 KDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVV 272

Query: 183 CYAGLITA--HTNKIPRADDTATKIIE 207
            +  ++ A     K+  A D   K+I+
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQ 299


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 28/260 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV+       +      + ++M   G+QPT   + S++ G  K  RL + +   ++ K
Sbjct: 625 YNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 684

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G   +V +Y+ LI   GK    D+A  I EE+ +  + PN  T+ CLL+A   A ++D
Sbjct: 685 SIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEID 744

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG- 222
                 ++M       +   Y+ +I                I +  +    W  ++  G 
Sbjct: 745 EAQVCFQNMKNLKCSPNAMTYSIMING-----------LCMIRKFNKAFVFWQEMQKQGL 793

Query: 223 --NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
             NN     M      +  L  A  V    G   R        F A   + D      ++
Sbjct: 794 KPNNITYTTM------IAGLAKAGNVMEARGLFDR--------FKASGGVPDSACYNAMI 839

Query: 281 EMLKKDRKSPDVYIVMQNIR 300
           E L    K+ D YIV +  R
Sbjct: 840 EGLSSANKAMDAYIVFEETR 859



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 115/282 (40%), Gaps = 18/282 (6%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R +++++   G+ P    +  LI G +K    ++T+    +MK  G   DV  YN +I  
Sbjct: 572 RALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDG 631

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+A ++ EEMK   ++P   TY  +++  A   +LD  Y +  +  + G  L+
Sbjct: 632 FCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLN 691

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQ-----SKGWSSVETSGNNAEN-EMMGVSK 234
              Y+ LI     K+ R D+    + EL+++     S  W+ +  +   AE  +   V  
Sbjct: 692 VVIYSSLIDGF-GKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCF 750

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           + + NL  +                Y +  +    ++         + ++K    P+   
Sbjct: 751 QNMKNLKCSPNA-----------MTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNIT 799

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               I     +G++     +F+ +  S   P +  Y  ++EG
Sbjct: 800 YTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEG 841



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S Y T++ +L++  R   +  ++  M   G +    LF +L+    +  R+       D+
Sbjct: 204 SAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDE 263

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MK+N F  D+ +YN  I   GK    D A + F EMK   + P+  TY  L+     A +
Sbjct: 264 MKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARR 323

Query: 162 LDPVYAIVRDM 172
           LD    +  ++
Sbjct: 324 LDEAVELFEEL 334



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 118/301 (39%), Gaps = 11/301 (3%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  N   + T+V     + R      + D+M  +       L++  I    K  ++   +
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            F  +MKA G +PD   Y  LI V  K +  D+A+ +FEE+      P    Y  ++   
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
            +AG+ D  Y+++      G       Y  ++T    K         + + + ++ +  +
Sbjct: 354 GSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRK-----GKVEEALRIHDEMRQDA 408

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
           +   +  N   +M+     EL      +   +  G    ++TV  +    C   K  +A 
Sbjct: 409 APNLTTYNILIDML-CKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEAC 467

Query: 277 ETLLEMLKKDRK--SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
              L +   D K  SPD       I      G +D+ + ++E  + S++ P   +Y +L+
Sbjct: 468 SIFLGL---DHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLI 524

Query: 335 E 335
           +
Sbjct: 525 Q 525



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y+ ++  L   R+F      + +M   G++P    + ++I G  K   + +     
Sbjct: 761 NAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLF 820

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+ KA+G +PD A YN +I        +  A  +FEE +    + N +T V LL+A   A
Sbjct: 821 DRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKA 880

Query: 160 GQLDP---VYAIVRDMTAA 175
             L+    V A++R+M  +
Sbjct: 881 DCLEQAAIVGAVLREMAKS 899



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 64/161 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +        Y +VV  L    R      ++++    GV     ++ SLI G  K 
Sbjct: 646 EEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKV 705

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + +   +++   G  P+   +N L+    K +  D+A   F+ MK  +  PN  TY
Sbjct: 706 GRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTY 765

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             ++N      + +  +   ++M   G   +   Y  +I  
Sbjct: 766 SIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAG 806



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    F SLI G  +  R+ D +   ++M  +  +P+V VY  LI    KC   +   +I
Sbjct: 480 PDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKI 539

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++EM      P+       ++    AG+++   A+  ++ A G   D   Y+ LI
Sbjct: 540 YKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILI 594



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E    ++  +   YN  +       +  +    + +M   G+ P    + +LI    K 
Sbjct: 262 DEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKA 321

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL +     +++  N  +P V  YN +I   G     D+A  + E  K+    P+   Y
Sbjct: 322 RRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAY 381

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAG--------LDKFCYAGLITA 190
            C+L      G+++    I  +M    A         +D  C AG + A
Sbjct: 382 NCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEA 430


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 109/254 (42%), Gaps = 8/254 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +M  +G+ PT  ++++ + G +K    +       +MK      +   Y  +I+V G
Sbjct: 222 VISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYG 281

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K K    ++++F EMK    KPN  TY  L+NA A  G  +    +  +M  AG   D +
Sbjct: 282 KAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 341

Query: 183 CYAGLITAHTNK-IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
            Y  L+ A++   +P+    A++I  L+E   G      S N   +      +  L+   
Sbjct: 342 AYNALMEAYSRAGLPQG---ASEIFSLMEHM-GCEPDRASYNILVD---AYGRAGLHQEA 394

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
            A +   +   +   +  + +   A A+  +V   E ++  L K    PD + +   +  
Sbjct: 395 EAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNA 454

Query: 302 YLHSGDIDNGHKVF 315
           Y  +G +D+  ++ 
Sbjct: 455 YGRAGRLDDMERLL 468



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 122/315 (38%), Gaps = 27/315 (8%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           + F PD+  YN LI   G+ +  ++A  I+  + +    P   TY  LL A   +GQL  
Sbjct: 159 SSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHR 218

Query: 165 VYAIVRDMTAAGAGLDKFCYA----GLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
              ++ +M   G       Y     GL+ A      R  + A ++ + +++ +  ++ ET
Sbjct: 219 AEGVISEMQKNGLPPTATVYNAYLDGLLKA------RCSEKAVEVYQRMKKERCRTNTET 272

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                   + G +K+ + +L     +   G      +  Y    +A A     +  E + 
Sbjct: 273 Y--TLMINVYGKAKQPMSSLKVFNEMKTIG--CKPNICTYTALVNAFAREGLCEKAEEVF 328

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF---EDYICSEKFPPAELYATLVEGA 337
           E +++    PDVY     +  Y  +G      ++F   E   C    P    Y  LV+  
Sbjct: 329 EEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCE---PDRASYNILVD-- 383

Query: 338 MFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
              Y   G+ Q A+     +  +   + P M S +LL++A  KSG       +   +   
Sbjct: 384 --AYGRAGLHQEAEAAFQELKQQG--MRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKS 439

Query: 397 KITPSLPAVEAYYNG 411
            + P   A+ A  N 
Sbjct: 440 GLRPDTFALNAMLNA 454



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V +   +       +V+++M   G +P    +++L+    +    Q      
Sbjct: 304 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 363

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+  G  PD A YN L+   G+     +A   F+E+K+  ++P  ++++ LL+A A +
Sbjct: 364 SLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAKS 423

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           G +     ++  +  +G   D F    ++ A+  +  R DD
Sbjct: 424 GNVARCEEVMAQLHKSGLRPDTFALNAMLNAY-GRAGRLDD 463



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 63/152 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            A+ YN  +  L   R      +VY  M  +  +   + +  +I    K  +   +    
Sbjct: 234 TATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVF 293

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  G  P++  Y  L++   +    ++A  +FEEM++   +P+   Y  L+ A + A
Sbjct: 294 NEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRA 353

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           G       I   M   G   D+  Y  L+ A+
Sbjct: 354 GLPQGASEIFSLMEHMGCEPDRASYNILVDAY 385


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 161/387 (41%), Gaps = 25/387 (6%)

Query: 31  EYARRN-YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMK 88
           E AR +  A +A  YN ++       R      +++  M     P  D+F ++L++   K
Sbjct: 255 ELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVP--DVFTYNLLIALCK 312

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             +L++      + +  G + DV  Y+YL+   GK   + +A+ +F  M+K    P+   
Sbjct: 313 SKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVV 372

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G++D    ++ DM   G   D   Y  ++    +   R +  A     +
Sbjct: 373 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTY-NIVIDVLSSCGRYEK-AYSFFGM 430

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
           +++ K    V T  N   N +  + + +E  +L      ++    L+   T+        
Sbjct: 431 MKRRKHSPDVVTY-NTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDT----- 484

Query: 268 AELKDVQAMETLLEM---LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
             L     ME  LE    L K   +P+ YI    I  +  SG +D G+++F+D I    F
Sbjct: 485 --LAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF 542

Query: 325 PPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGY 383
           P +  Y  LV G +  G+T   M+L Q+ +   +      +P + +  +L+ +   +G  
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGH------TPALATYNVLIRSLSMAGQV 596

Query: 384 TTANYIWDLMQARKITPSLPAVEAYYN 410
             A  ++  M A+   P +    A  N
Sbjct: 597 EDAYTLFKEMIAKGFNPDMQTYSALPN 623



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 67/165 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  R+    +   YN V+  L+S  R+      +  M      P    +++L+ G  K 
Sbjct: 394 EDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKL 453

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  +     D+M+AN  +PD+  +  LI    K    + A+     + K    PN   Y
Sbjct: 454 RRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIY 513

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++    +GQ+D  Y + +DM       D   Y  L+   + +
Sbjct: 514 NALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRR 558



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 9/265 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
            +P    F +L++   K SR  D      +M   G   DV V N LI    +     QA 
Sbjct: 157 CKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQAR 216

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           R+   M  +    +  TY  L+NA   AGQ+  V + +      G  L    Y  +I   
Sbjct: 217 RLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGF 276

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRG 250
                 A+  AT++ E     +    V T      N ++ + K ++L    T      +G
Sbjct: 277 IRCGRLAE--ATQLFESTMTKESVPDVFTY-----NLLIALCKSKQLEEALTLFQEAEQG 329

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
           G +  + T  ++        +  +A+E    M +K    PD  +    I C    G +D 
Sbjct: 330 GVVLDVFTYSYLMDAFGKAGRAAKALEVFYNM-QKAGCMPDTVVYNVLISCLGKQGKVDE 388

Query: 311 GHKVFEDYICSEKFPPAELYATLVE 335
             ++ ED       P    Y  +++
Sbjct: 389 ALELLEDMNRKGIMPDCRTYNIVID 413


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++V  L  Q        V ++M  +G  P    ++ +I G  K   + D     +   
Sbjct: 363 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 422

Query: 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G+LPDV  +N LI   G CK    D A+++ E M +Y + P+  TY  +LN    AG+
Sbjct: 423 MKGYLPDVFTFNTLID--GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGK 480

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKI 205
           ++ V    ++M   G   +   Y  LI     +NK+  A     K+
Sbjct: 481 VNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKM 526



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 61/158 (38%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A      +   YN V+  L           V +D ++ G  P    F++LI G  K  
Sbjct: 385 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 444

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L       ++M   G  PD   YN +++   K    ++    F+EM      PN  TY 
Sbjct: 445 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 504

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+     + +++    ++  M+  G   D   +  LI
Sbjct: 505 ILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI 542



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 7/176 (3%)

Query: 17  ALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           AL +R  V  AG    +  +R  + N   YN  +  L    R      + D M    V P
Sbjct: 195 ALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-P 253

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIR 132
               +++LI G  K S  Q+   +  +M   G LPD   YN +I   G CK S   +A  
Sbjct: 254 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIID--GYCKISMVQEATE 311

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + ++       P+  TY  L+N   A G ++    +  +  A G   D   Y  L+
Sbjct: 312 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 367



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 54/137 (39%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++ +     +      V   M  +G+ P    F++LI G  +   L+  +   
Sbjct: 499 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 558

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++  G+      +N LI       N   A +IF+EM     + +  TY  L++     
Sbjct: 559 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 618

Query: 160 GQLDPVYAIVRDMTAAG 176
             +D  Y  + +M   G
Sbjct: 619 ANVDRAYMHLVEMIKKG 635



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 52/115 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   + Y+  A  +NT++ + + +    +   ++D+M+  G +     +  LI G+ K 
Sbjct: 559 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 618

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           + +   +    +M   GF+P ++ +  +I+         QA+ I   M K  V P
Sbjct: 619 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 673



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 44  YNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YNT++  L      Q     LR     MM  G  P    ++++I G  K S +Q+     
Sbjct: 258 YNTLIRGLCKKSMPQEAMHYLRR----MMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 313

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
                 GF+PD   Y  LI+  G C   D  +A+ +F E +   +KP+   Y  L+    
Sbjct: 314 KDAVFKGFVPDQVTYCSLIN--GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 371

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             G +     ++ +M   G   D   Y  +I
Sbjct: 372 LQGLILHALQVMNEMAEEGCHPDIQTYNIVI 402


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/321 (19%), Positives = 121/321 (37%), Gaps = 54/321 (16%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           ++  +N ++      R     R   ++M   G +P    +   I    K    ++     
Sbjct: 202 DSHSFNILIHGYCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVIL 261

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G  PDV  Y+  I   GK +  ++A+ ++E+M K   KP+ + +  L+     +
Sbjct: 262 NEMGEKGCEPDVIAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRS 321

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNKIPRADDTATKIIELVEQSKGWSSV 218
           G+L+  + +  DM   G   D + Y  +I  A  N   R  ++A K++E +E +     +
Sbjct: 322 GRLNDAWYVFEDMENHGVSRDLWTYNAMIYHACAN---RQGNSALKLLERMEVNSCKPDL 378

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
           ET                                       Y      C ++KD++ ++ 
Sbjct: 379 ET---------------------------------------YQPLLKMCCKMKDMKVLKF 399

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
           LL  +  +    D+      IR    SG +++    F+D + +   P    Y  L++   
Sbjct: 400 LLSHMFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILLK--- 456

Query: 339 FGYTPKGMQLAQDTLVNMNSR 359
                   +L Q+ +V M  +
Sbjct: 457 --------ELGQNNMVEMKGK 469



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +  +  +AS Y   + +   Q+ F  +  + ++M   G +P    +   I    K 
Sbjct: 227 EEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGKA 286

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +     ++M  N   PD   ++ LI V G+    + A  +FE+M+ + V  +  TY
Sbjct: 287 RKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVSRDLWTY 346

Query: 150 VCLL-NACA 157
             ++ +ACA
Sbjct: 347 NAMIYHACA 355


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G +P    + +L+ G     ++ D +     M+  GF P+   Y  LI    K    ++A
Sbjct: 282 GFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEA 341

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +++F EM++YE + +  TY  L++     G++D  Y ++ DM   G    +  Y  ++ A
Sbjct: 342 MKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVA 401

Query: 191 HTNKIPRADDTATKIIELVEQSK 213
           H  K     ++  + +EL+E+ +
Sbjct: 402 HEKK-----ESFEECLELMEKMR 419



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/421 (21%), Positives = 167/421 (39%), Gaps = 57/421 (13%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            G LG RFFV +A      +  Y ++   Y ++V  L+  R+F  +  + ++M  +  Q 
Sbjct: 126 AGNLGYRFFVWAA-----KQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 180

Query: 75  TR-DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
              +LF  L+        ++      D+M   GF PD  V+  L+    K  +   A ++
Sbjct: 181 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 240

Query: 134 FEEMK--------------------------KYEV--------KPNGQTYVCLLNACAAA 159
           FE+M+                          KY +        +P+   Y  LL+  A A
Sbjct: 241 FEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANA 300

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G++   Y ++RDM   G   +  CY  LI A   K+ R ++     +E+ E+ +  + V 
Sbjct: 301 GKMADAYDLLRDMRRRGFEPNANCYTVLIQALC-KVDRMEEAMKVFVEM-ERYECEADVV 358

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
           T              ++ Y     + + ++G   S L  ++ +  H   E     + E  
Sbjct: 359 TYTALVSGFCKWGKIDKCY--IVLDDMIKKGLMPSELTYMHIMVAHEKKE-----SFEEC 411

Query: 280 LEMLKKDRK---SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           LE+++K R+    PD+ I    IR     G++    +++ +   +   P  + +  ++  
Sbjct: 412 LELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMIN- 470

Query: 337 AMFGYTPKGMQL-AQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
              G   +G  L A D    M +R +F   + G+  LL+    K      A  +W  + +
Sbjct: 471 ---GLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITS 527

Query: 396 R 396
           +
Sbjct: 528 K 528


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++++D+M+  G++P    + + IVG +K       F  +++MKA GF PD+  YN LI+ 
Sbjct: 437 KELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLING 496

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  N D A  + ++M+   + P+  TY  +++A   +G L     +  DM   G    
Sbjct: 497 LCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPS 556

Query: 181 KFCYAGLITAH 191
              Y  LI ++
Sbjct: 557 VVTYTVLIHSY 567



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 147/371 (39%), Gaps = 29/371 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN ++     +  F    D+  +M+  G  PT   +++++    +  R+ D   + 
Sbjct: 276 SAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYL 335

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M     +PD+  YN LI    +  N  +A+ +F E++   + P+  TY  L++     
Sbjct: 336 DVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRT 395

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII------ELVEQ 211
           G LD    +  DM   G   D   +  L+        +P A +   +++      + +  
Sbjct: 396 GNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAY 455

Query: 212 SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
           +         GN ++   M   KEE+          +  GF   L+T Y+V  +   +L 
Sbjct: 456 TTRIVGELKLGNPSKAFGM---KEEM----------KAEGFPPDLIT-YNVLINGLCKLG 501

Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
           +      L++ ++ +   PD       I  +L SG +    +VF D +     P    Y 
Sbjct: 502 NFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYT 561

Query: 332 TLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
            L+      Y  +G +  A+     M  + +  SP + +   L+    K      A  ++
Sbjct: 562 VLIH----SYAVRGRLDFAKKYFDEMQDKGV--SPNVITYNALIYGLCKENMMDVAYNLF 615

Query: 391 DLMQARKITPS 401
             M+++ ++P+
Sbjct: 616 AEMESKGVSPN 626



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 63/161 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +N   +   YNT++          + + + DDM+  G+ P    F  L+ G  +  
Sbjct: 372 ELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMG 431

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L       D+M + G  PD   Y   I    K  N  +A  + EEMK     P+  TY 
Sbjct: 432 NLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYN 491

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            L+N     G  D    +V+ M   G   D   Y  +I AH
Sbjct: 492 VLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAH 532



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 64/164 (39%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     +  +   YN ++  L     F    ++   M L+G+ P    + S+I   +  
Sbjct: 476 EEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLIS 535

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+        M   G  P V  Y  LI         D A + F+EM+   V PN  TY
Sbjct: 536 GLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             L+        +D  Y +  +M + G   +K+ Y  LI  ++N
Sbjct: 596 NALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSN 639



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 53/110 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ S   + R    +  +D+M   GV P    +++LI G  K + +   +    +M+
Sbjct: 560 YTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEME 619

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           + G  P+   Y  LI+     +    A++++++M   E+KP+  T+  L+
Sbjct: 620 SKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALM 669



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 108/298 (36%), Gaps = 50/298 (16%)

Query: 109 PDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
           P +  +N ++    +CK  +  +A+ + + M+ +   PN  +Y  L+N  +  G+ D   
Sbjct: 205 PTIVTFNTMMD--SRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAK 262

Query: 167 AIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAE 226
            ++  M+  G  +    Y  LI     K            E+ E++          N+  
Sbjct: 263 ELIEQMSMLGLKVSAHTYNPLIRGFCKK------------EMFEEA----------NDLR 300

Query: 227 NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286
            EM+G        LPT              +  Y+   ++   L  V      L+++  +
Sbjct: 301 REMLGRGA-----LPT--------------VVTYNTIMYSLCRLGRVSDARRYLDVMVNE 341

Query: 287 RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM 346
              PD+      I  Y   G+      +F +       P    Y TL++G   G     +
Sbjct: 342 DLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDG---GCRTGNL 398

Query: 347 QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPA 404
            +A+    +M      L P + +  +LV    + G    A  ++D M +R + P   A
Sbjct: 399 DIAKGMKDDMIKHG--LCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIA 454


>gi|341605781|gb|AEK82993.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605783|gb|AEK82994.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 70/160 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR Y+ +   YNT++     +  F     ++ +M+  G+ P+   + SLI    K  
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +     F DQM+  G  P+   Y  L+    +    ++A R+  EM      P+  TY 
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            L+N     G+++   A++ DM   G   D   Y+ +++ 
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 12/300 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN V+  L  + R   +  V  +M   G       +++LI G  K           
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  +G  P V  Y  LI    K  N ++A+   ++M+   + PN +TY  L++  +  
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G ++  Y ++R+M   G       Y  LI  H   +    + A  ++E +++ KG S   
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHC--VTGKMEDAIAVLEDMKE-KGLSPDV 450

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKDVQAM 276
            S +     + G  +   Y++  A  V R     G     +T   +    C + +  +A 
Sbjct: 451 VSYSTV---LSGFCRS--YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +   EML+     PD +     I  Y   GD++   ++  + +     P    Y+ L+ G
Sbjct: 506 DLYEEMLRVGL-PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 44  YNTVV-TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YN V+  ++ S+R      +V+ +M+   V P    ++ LI G      +       D+M
Sbjct: 172 YNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM 231

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +  G LP+V  YN LI    K +  D   ++   M    ++PN  +Y  ++N     G++
Sbjct: 232 ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM 291

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             V  ++ +M   G  LD+  Y  LI  +
Sbjct: 292 KEVSFVLTEMNRRGYSLDEVTYNTLIKGY 320



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 35  RNYANNASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           R    N   Y T+V   + +      + +LR++ D+    G  P+   +++LI G     
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN----GFSPSVVTYNALINGHCVTG 429

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +++D     + MK  G  PDV  Y+ ++S   +  + D+A+R+  EM +  +KP+  TY 
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            L+       +      +  +M   G   D+F Y  LI A+
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 40  NASEYNTVVTSLTSQRR----FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   YNT++      R+    F LLR     M L G++P    ++ +I G  +  R+++ 
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRS----MALKGLEPNLISYNVVINGLCREGRMKEV 294

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            F   +M   G+  D   YN LI   G CK  N  QA+ +  EM ++ + P+  TY  L+
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIK--GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLI 352

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           ++   AG ++     +  M   G   ++  Y  L+   + K
Sbjct: 353 HSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 27/365 (7%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHS------LIVGTMKGSRLQDTFFFRDQM-KANGFLPDVA 112
           L D Y  ++   +Q T DL +S      L+V +     L D       + +A+GF+P V 
Sbjct: 111 LDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVL 170

Query: 113 VYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
            YN ++    + K N   A  +F+EM + +V PN  TY  L+     AG +D    +   
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230

Query: 172 MTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM- 230
           M   G   +   Y  LI  +  K+ + DD   K++  +   KG      S N   N +  
Sbjct: 231 METKGCLPNVVTYNTLIDGYC-KLRKIDD-GFKLLRSMAL-KGLEPNLISYNVVINGLCR 287

Query: 231 -GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRK 288
            G  KE  + L     ++RRG  L  +   Y+      C E    QA+    EML+    
Sbjct: 288 EGRMKEVSFVLTE---MNRRGYSLDEV--TYNTLIKGYCKEGNFHQALVMHAEMLRHGL- 341

Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQ 347
           +P V      I     +G+++   +  +        P    Y TLV+    G++ KG M 
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVD----GFSQKGYMN 397

Query: 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEA 407
            A   L  MN      SP + +   L+     +G    A  + + M+ + ++P + +   
Sbjct: 398 EAYRVLREMNDNG--FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455

Query: 408 YYNGL 412
             +G 
Sbjct: 456 VLSGF 460



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y++++     QRR     D+Y++M+  G+ P    + +LI        L+      ++M 
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPDV  Y+ LI+   K   + +A R+  ++   E  P+  TY  L+  C+   +  
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI-EFK 606

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT 189
            V ++++           FC  G++T
Sbjct: 607 SVVSLIKG----------FCMKGMMT 622


>gi|108710734|gb|ABF98529.1| expressed protein [Oryza sativa Japonica Group]
 gi|125545490|gb|EAY91629.1| hypothetical protein OsI_13265 [Oryza sativa Indica Group]
          Length = 771

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMK 88
           E +RR   +N   YN  + +    RR  +   ++  M         D+   +SLI   + 
Sbjct: 215 EMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIRALVV 274

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQ 147
           G+R+ D     D+MK+ G  PDV  Y  ++  C K    D A+R+F+EM+  Y VK +  
Sbjct: 275 GARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVKGDAV 334

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            Y  LL+    A +LD        M A G
Sbjct: 335 VYNSLLDGLFKAKKLDEACGFFETMVADG 363



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 1/146 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N+++ +L    R      VYD+M   G++P    + +++ G  K  R+ D      +M+
Sbjct: 265 HNSLIRALVVGARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMR 324

Query: 104 AN-GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            + G   D  VYN L+    K K  D+A   FE M    ++ +  T+  +++     G+ 
Sbjct: 325 GSYGVKGDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSASTHNTVIDGLFKNGRA 384

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +    +  D+   G  LD   Y+ ++
Sbjct: 385 EAACRLFYDLRRKGQLLDGIAYSIMV 410



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ--PTRDLFHSLIV---GTMKGSRLQDTFFF 98
           YN+++TS   +     L+ V+  +   G Q  P     ++LI+   G M  + +  +   
Sbjct: 613 YNSLMTSFVKKG---YLKQVWAILHERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSII- 668

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
             ++   G   D+ +YN LI+  GK    D+A  + E++    +KP+  T+  L+N  A 
Sbjct: 669 -SELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAK 727

Query: 159 AGQLDPVYAIVRDMTAAG 176
           AG+L      +R M A G
Sbjct: 728 AGRLKEADKYLRKMIAEG 745



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A   NT ++   ++ +  +   +++     G + T   ++SL+   +K   L+  +   
Sbjct: 574 DADMVNTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAIL 633

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +        D+A YN +I   G+   ++ A  I  E+ K  V  +   Y  L+N    A
Sbjct: 634 HERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKA 693

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAHTNKIPRADDTATKII 206
           G++D   +++  +   G   D   +  L  I A   ++  AD    K+I
Sbjct: 694 GKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMI 742


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 163/403 (40%), Gaps = 59/403 (14%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRR----FFLLRDVYDDMMLDGVQPTR 76
           RF       E+  +     +   YN ++  L   +R    + LL+     M  D + P  
Sbjct: 274 RFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKR----MRGDNLAPDE 329

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIF 134
             +++LI G    S++       ++M   G  P +A Y  LI   G C+N   D+A+R+ 
Sbjct: 330 CTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLID--GYCRNGTIDEALRVL 387

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHT 192
            EM+   VKP+  TY  +LN     G +   +++  +M   G   D + Y  L+      
Sbjct: 388 YEMQVAGVKPSEVTYSAMLN-----GSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKG 442

Query: 193 NKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-----------EELYNLP 241
             + +A +  + I+ +       S+++    NA   ++G+             E++  + 
Sbjct: 443 GHLVQAKEFMSCIVHIP------SAIDQKTLNA--LLLGICNHGSLDEALDLCEKMVTIN 494

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
               +H     LS            C + K V A+  LL+M+ +    PD+      ++ 
Sbjct: 495 FIPDIHTYTILLSGF----------CRKGKIVPAV-ILLQMMLEKGLVPDIVTYTCLLKG 543

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLV--EGAMFGYTPKG-MQLAQDTLVNMNS 358
            +  G +     +F++ IC E      +YA  +     M GY   G +   + T+ +MN 
Sbjct: 544 LIKEGQVKAASYLFQEIICKEG-----MYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQ 598

Query: 359 RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS 401
             ++ +P   S  +L+    K G  + + Y++  M  + I P+
Sbjct: 599 NKVYPNP--ASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPT 639



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y DM+  G++PT   +  LI+G  K   ++    F D+M   G  PD   ++ LI+   
Sbjct: 627 LYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFS 686

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +      A+++F  MK   + P+ +TY  ++N       L     ++RDM  +G      
Sbjct: 687 EKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHT 746

Query: 183 CYAGLITA 190
            Y  LI A
Sbjct: 747 HYIALINA 754



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++     + RF     V +DM  +GV+     ++ +I    K  R    +   
Sbjct: 258 NVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLL 317

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+ +   PD   YN LI           AI IF EM +  +KP+  TY  L++     
Sbjct: 318 KRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRN 377

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G +D    ++ +M  AG    +  Y+ ++
Sbjct: 378 GTIDEALRVLYEMQVAGVKPSEVTYSAML 406



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 54/121 (44%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++S++ G +K  +L         M  N   P+ A YN L+    K  +  ++I ++++M 
Sbjct: 573 YNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMV 632

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
           +  +KP   TY  L+   +  G ++     +  M   G   D+  +  LI A + K   +
Sbjct: 633 RKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMS 692

Query: 199 D 199
           D
Sbjct: 693 D 693


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++V  L  Q        V ++M  +G  P    ++ +I G  K   + D     +   
Sbjct: 364 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 423

Query: 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G+LPDV  +N LI   G CK    D A+++ E M +Y + P+  TY  +LN    AG+
Sbjct: 424 MKGYLPDVFTFNTLID--GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGK 481

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKI 205
           ++ V    ++M   G   +   Y  LI     +NK+  A     K+
Sbjct: 482 VNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKM 527



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 61/158 (38%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A      +   YN V+  L           V +D ++ G  P    F++LI G  K  
Sbjct: 386 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 445

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L       ++M   G  PD   YN +++   K    ++    F+EM      PN  TY 
Sbjct: 446 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 505

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+     + +++    ++  M+  G   D   +  LI
Sbjct: 506 ILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI 543



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 7/176 (3%)

Query: 17  ALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           AL +R  V  AG    +  +R  + N   YN  +  L    R      + D M    V P
Sbjct: 196 ALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-P 254

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIR 132
               +++LI G  K S  Q+   +  +M   G LPD   YN +I   G CK S   +A  
Sbjct: 255 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIID--GYCKISMVQEATE 312

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + ++       P+  TY  L+N   A G ++    +  +  A G   D   Y  L+
Sbjct: 313 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 368



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 54/137 (39%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++ +     +      V   M  +G+ P    F++LI G  +   L+  +   
Sbjct: 500 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 559

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++  G+      +N LI       N   A +IF+EM     + +  TY  L++     
Sbjct: 560 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 619

Query: 160 GQLDPVYAIVRDMTAAG 176
             +D  Y  + +M   G
Sbjct: 620 ANVDRAYMHLVEMIKKG 636



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 52/115 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   + Y+  A  +NT++ + + +    +   ++D+M+  G +     +  LI G+ K 
Sbjct: 560 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 619

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           + +   +    +M   GF+P ++ +  +I+         QA+ I   M K  V P
Sbjct: 620 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 674



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 44  YNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YNT++  L      Q     LR     MM  G  P    ++++I G  K S +Q+     
Sbjct: 259 YNTLIRGLCKKSMPQEAMHYLRR----MMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 314

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
                 GF+PD   Y  LI+  G C   D  +A+ +F E +   +KP+   Y  L+    
Sbjct: 315 KDAVFKGFVPDQVTYCSLIN--GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 372

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             G +     ++ +M   G   D   Y  +I
Sbjct: 373 LQGLILHALQVMNEMAEEGCHPDIQTYNIVI 403


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE   R    N   +N V+  L          D+Y D+M     PT   +  LI G +K 
Sbjct: 847  EEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL 906

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             RL++   F ++M   G +P+  +YN L++  GK  + + A  +F  M K  ++P+ ++Y
Sbjct: 907  GRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +++     G++D       ++  +G   D  CY  +I  
Sbjct: 967  SIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMING 1007



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 72/153 (47%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            N   YN ++     Q       +++  M+ +G++P    +  ++       ++ D   + 
Sbjct: 927  NCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYF 986

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++K +G  PD+  YN +I+  G+ +  ++A+ +F+EM+   + P+  TY  L+     A
Sbjct: 987  EELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIA 1046

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            G ++    +  ++   G   + F Y  LI  H+
Sbjct: 1047 GMVEEAGKMYEELQLKGLEPNVFTYNALIRGHS 1079



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 59/114 (51%)

Query: 64   YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
            ++++ L G+ P    ++ +I G  +  R+++     D+M+  G  PD+  YN LI   G 
Sbjct: 986  FEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGI 1045

Query: 124  CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
                ++A +++EE++   ++PN  TY  L+   + +G  D  YA+ + M   G 
Sbjct: 1046 AGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGC 1099



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A NAS Y     SL  Q R    ++ ++ +   G+ P    ++ L+    K  R+ D   
Sbjct: 474 ACNASLY-----SLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIK 528

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M+ NG  P+V + N LI    K    D+A ++F+ MK+ ++ P   TY  LL    
Sbjct: 529 LLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLG 588

Query: 158 AAGQLDPVYAIVRDMTA 174
             G++    A+ + M A
Sbjct: 589 KEGRVQEATALFKGMIA 605



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 11/160 (6%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           VY  M+ +G++P+   + +L+V   K   ++       +M++ G  P++  +   I + G
Sbjct: 214 VYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILG 273

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    D+A  I + M      P+  TY  L++A   AG+L+    +   M A+    D+ 
Sbjct: 274 RAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRV 333

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
            Y  L+   ++     D  A K        + WS +E  G
Sbjct: 334 TYITLLDKFSD---HGDLDAIK--------EFWSEMEADG 362



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 106/301 (35%), Gaps = 22/301 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ +L +  +    ++++  M     +P R  + +L+        L     F  +M+
Sbjct: 300 YTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEME 359

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+G+LPDV  +  LI    K    D+A    + MKK  V PN  TY  L+       +LD
Sbjct: 360 ADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLD 419

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               +   M + G     + Y   I  +                  E  K   + E    
Sbjct: 420 EALELFNSMESLGLETTAYTYILFIDYYGKS--------------GESGKAIKTFEKMKT 465

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--------LTVYHVAFHACAELKDVQA 275
           N     +      LY+L     +     F + L           Y++      +   V  
Sbjct: 466 NGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDD 525

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              LL  ++++   P+V I+   I     +  +D   K+F+     +  P    Y TL+ 
Sbjct: 526 AIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLA 585

Query: 336 G 336
           G
Sbjct: 586 G 586



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 1/157 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++ +L  +R    +  +  +M   G++P    F   I    +  ++ + +    +M 
Sbjct: 230 YSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMD 289

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y  LI         + A  +F +MK    KP+  TY+ LL+  +  G LD
Sbjct: 290 DAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLD 349

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
            +     +M A G   D   +  LI A   K+ + D+
Sbjct: 350 AIKEFWSEMEADGYLPDVVTFTILIDALC-KVGKVDE 385



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           + P+ + ++SLI G +K    +  +    +MK  G  PDV  YN  +   GK     +  
Sbjct: 784 ITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELF 843

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            ++EEM     KPN  T+  ++     +  LD    +  D+ +       + Y  LI
Sbjct: 844 DLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLI 900



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 62/151 (41%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +A  YN ++       R      +  +M  +G  P   + +SLI    K  R+ + + 
Sbjct: 504 APDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWK 563

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +MK     P V  YN L++  GK     +A  +F+ M   +  PN  ++  LL+   
Sbjct: 564 MFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLC 623

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             G++D    ++  MT      D   Y  +I
Sbjct: 624 KNGEVDLALKMLFRMTEMNCFPDVLTYNTVI 654



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L   +R      ++D+M   G+ P    +++LI+       +++     ++++
Sbjct: 1001 YNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQ 1060

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              G  P+V  YN LI       N D+A  ++++M     +PN  T+  L N
Sbjct: 1061 LKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPN 1111


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ ++ +   +R+     ++Y +M+   + PT   ++S+I G  K  R+ D     D M 
Sbjct: 128 FSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMA 187

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PDV  ++ LI+   K K  D  + IF EM +  +  N  TY  L++     G LD
Sbjct: 188 SKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 247

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               ++ +M + G   D   +  ++    +K
Sbjct: 248 AAQDLLNEMISCGVAPDYITFHCMLAGLCSK 278



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 58/143 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R +       YN+++     Q R    + + D M   G  P    F +LI G  K 
Sbjct: 149 KEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKA 208

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +      +M   G + +   Y  LI    +  + D A  +  EM    V P+  T+
Sbjct: 209 KRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITF 268

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
            C+L    +  +L   +AI+ D+
Sbjct: 269 HCMLAGLCSKKELRKAFAILEDL 291



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 34/330 (10%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----RDLFHSLIVGTMKGSRL--- 92
           N   +NT++ SL  + R      + D M+ +G QP       +   +++ T    RL   
Sbjct: 9   NVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKD 68

Query: 93  ------QDTFFFRDQMKANGFLPDVAVYNYLI-SVC--GKCKNSDQAIRIFEEMKKYEVK 143
                 Q+ F    +M   G  P+V  YN +I S C  G+  ++DQ +R    M + ++ 
Sbjct: 69  GNHINAQNLF---TEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLR---HMIEKQIN 122

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           P+  T+  L+NA     ++     I ++M           Y  +I     K  R DD A 
Sbjct: 123 PDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFC-KQDRVDD-AK 180

Query: 204 KIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYN--LPTAEYVHRRGGFLSRLLTVYH 261
           ++++ +  SKG S    + +   N   G  K +  +  +     +HRR G ++  +T Y 
Sbjct: 181 RMLDSM-ASKGCSPDVVTFSTLIN---GYCKAKRVDNGMEIFCEMHRR-GIVANTVT-YT 234

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS-GDIDNGHKVFEDYIC 320
              H   ++ D+ A + LL  +     +PD YI    +   L S  ++     + ED   
Sbjct: 235 TLIHGFCQVGDLDAAQDLLNEMISCGVAPD-YITFHCMLAGLCSKKELRKAFAILEDLQK 293

Query: 321 SEKFPPAELYATLVEGAMFGYTPKGMQLAQ 350
           SE  P    +   +   + G+     ++ Q
Sbjct: 294 SEVCPRLIFFLFSLCSFILGFGEVCYRIVQ 323


>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRXNGFAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            N+  YN ++             +++  M+ +G++P    +  L+       R+ +   + 
Sbjct: 935  NSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYF 994

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++K  G  PD   YN++I+  GK +  D+A+ +F EMK   + P+  TY  L+     A
Sbjct: 995  EELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIA 1054

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            G++D    +  ++   G     F Y  LI  H+
Sbjct: 1055 GKVDVAVKMYEELQLVGLEPSVFTYNALIRGHS 1087



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 16/210 (7%)

Query: 13  SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           S+ G +GR  F      E      +  NA  YN ++  L        L+ VY  M+ +G+
Sbjct: 177 SIKGGIGRAPFALRKMTE----VGFILNAYSYNGLIHLLLPGFCNEALK-VYKRMISEGM 231

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P+   + +L+V   +    +      ++MK+ G  P++  Y   I   G+ +  D A  
Sbjct: 232 KPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWG 291

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           IF+EM      P+  TY  L++A  AAG+LD    +   M A+    D+  Y  L+    
Sbjct: 292 IFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLM---- 347

Query: 193 NKIPRADDTATKIIELVEQSKGWSSVETSG 222
                  D   K+ +L    + W+ +E  G
Sbjct: 348 -------DKFGKVGDLETVKRFWNEMEVDG 370



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 59/374 (15%)

Query: 40  NASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N + Y T+  +L+ +    R  F LR + +   +        L H L+ G        + 
Sbjct: 165 NLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGF-----CNEA 219

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                +M + G  P +  Y+ L+   G+  ++ + + + EEMK   ++PN  TY   + A
Sbjct: 220 LKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRA 279

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSK 213
              A ++D  + I ++M   G G D   Y  LI A     K+ +A +             
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL------------ 327

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
                                          YV  R    S     Y        ++ D+
Sbjct: 328 -------------------------------YVKMRASSHSPDRVTYITLMDKFGKVGDL 356

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           + ++     ++ D  +PDV      I     SGD+D    + +       FP    Y T+
Sbjct: 357 ETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTM 416

Query: 334 VEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393
           + G +     + +  A + L NM S  +   P   S +L +    KSG    A   ++ M
Sbjct: 417 ICGLL---KARRLDEALELLENMESLGV--KPTAFSYVLFIDYYGKSGDPAKAIDTFETM 471

Query: 394 QARKITPSLPAVEA 407
           + R I PS+ A  A
Sbjct: 472 KKRGIMPSIAACNA 485



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 120/321 (37%), Gaps = 11/321 (3%)

Query: 16   GALGRRFFVTSAGAEEYARRNYAN---NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
            G LG  F  T    E +     A    N   YN ++ +    +R   L D+Y +M   G 
Sbjct: 805  GLLGSNF--TEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGC 862

Query: 73   QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
            +P     + +I   +K + L        ++ +  F P    Y  LI    K   S+QA++
Sbjct: 863  EPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMK 922

Query: 133  IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            IFEEM  Y   PN   Y  L+N    +G++D    + + M   G   D   Y  L+    
Sbjct: 923  IFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLC 982

Query: 193  NKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF 252
              I    D A +  E ++ + G      S N   N   G+ K    +   + +   +   
Sbjct: 983  --ITGRIDEAVQYFEELKLT-GLDPDTVSYNFIIN---GLGKSRRLDEALSLFSEMKNRG 1036

Query: 253  LSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGH 312
            +S  L  Y+           V     + E L+     P V+     IR +  SG+ D   
Sbjct: 1037 ISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAF 1096

Query: 313  KVFEDYICSEKFPPAELYATL 333
             VF+  +     P  E +A L
Sbjct: 1097 SVFKKMMVVGCSPNTETFAQL 1117



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/291 (19%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ +L +  +    +++Y  M      P R  + +L+    K   L+    F ++M+
Sbjct: 308 YTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEME 367

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G+ PDV  Y  LI    K  + D+A  + + M    + PN  TY  ++     A +LD
Sbjct: 368 VDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLD 427

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               ++ +M + G     F Y   I  +                                
Sbjct: 428 EALELLENMESLGVKPTAFSYVLFIDYY-------------------------------- 455

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                  G S +    + T E + +RG   S  +   + + +  AE   +   E +   L
Sbjct: 456 -------GKSGDPAKAIDTFETMKKRGIMPS--IAACNASLYTLAETGRISEAEDIFNDL 506

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
            K   SPD       ++CY  +G ID   ++  + I     P   +  +L+
Sbjct: 507 HKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLI 557



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L   RR      ++ +M   G+ P    +++LI+      ++       ++++
Sbjct: 1009 YNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQ 1068

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
              G  P V  YN LI       N DQA  +F++M      PN +T+  L N    AG
Sbjct: 1069 LVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAG 1125



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105
           ++  L  +++    ++V+D    + G+ PT + ++ L+ G +  +  +      + MK+ 
Sbjct: 766 LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA 825

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  P+   YN L+   GK K  ++   ++ EM+    +PN  T+  +++A   +  L+
Sbjct: 826 GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLN 883



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 51/123 (41%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M+  G +P   + +SLI    K  R+   +    ++K     P V  YN L++  GK  
Sbjct: 540 EMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEG 599

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+ +F  M +    PN  T+  LL+  +    +D    +   MT      D   Y 
Sbjct: 600 KILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYN 659

Query: 186 GLI 188
            +I
Sbjct: 660 TII 662


>gi|298710575|emb|CBJ32006.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 706

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 59/118 (50%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A+ Y   +T+ +  +++ +     +DM   GV+ T  +F + + G  +  R ++     
Sbjct: 351 DATTYGAAITACSRGKQWQMALRFLEDMEKKGVERTEGVFQATLAGCARMGRWRECIVTL 410

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           DQM+ +G  P  A YN +I+ CG+     +AI I ++M      P+  T   ++ +CA
Sbjct: 411 DQMRKSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMSSRGATPDVITLNAVMTSCA 468



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           G++    ++ + I    KG + Q      RD    +G   ++  YN     CGK     +
Sbjct: 123 GIKANSFVYSAAIDACAKGRQWQKALILLRDMEVVDGLPANLICYNAAADACGKAGRPGE 182

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+ +  +M+K  VKPN  +Y+ +++AC+  G       ++ +M   G   D  CY   IT
Sbjct: 183 ALALLAKMQKVGVKPNEVSYLSVISACSRVGDWKRALLLLDEMIVMGVQPDLKCYCSAIT 242

Query: 190 A 190
           A
Sbjct: 243 A 243



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 40  NASEYNTVVTSLT---SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           N   Y +V+++ +     +R  LL    D+M++ GVQP    + S I    KG R +   
Sbjct: 198 NEVSYLSVISACSRVGDWKRALLL---LDEMIVMGVQPDLKCYCSAITACGKGGRWKQAL 254

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + M  +G  P+   YN  IS CGK     +A  +   M+   V P+  +Y   ++AC
Sbjct: 255 GLLNIMHKDGPPPNDYCYNAAISACGKSGQWREAKELLSTMRDRGVPPDLISYNSAIDAC 314

Query: 157 AAAGQLDPVYAIVRDMTAA 175
              G+ +    I   M  A
Sbjct: 315 GKGGRWEEGLKIFVGMVKA 333



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           Q+   LLRD+    ++DG+      +++      K  R  +      +M+  G  P+   
Sbjct: 145 QKALILLRDME---VVDGLPANLICYNAAADACGKAGRPGEALALLAKMQKVGVKPNEVS 201

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           Y  +IS C +  +  +A+ + +EM    V+P+ + Y   + AC   G+      ++  M 
Sbjct: 202 YLSVISACSRVGDWKRALLLLDEMIVMGVQPDLKCYCSAITACGKGGRWKQALGLLNIMH 261

Query: 174 AAGAGLDKFCYAGLITA 190
             G   + +CY   I+A
Sbjct: 262 KDGPPPNDYCYNAAISA 278



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 47/120 (39%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV+P    + S+I    +    +      D+M   G  PD+  Y   I+ CGK     QA
Sbjct: 194 GVKPNEVSYLSVISACSRVGDWKRALLLLDEMIVMGVQPDLKCYCSAITACGKGGRWKQA 253

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +   M K    PN   Y   ++AC  +GQ      ++  M   G   D   Y   I A
Sbjct: 254 LGLLNIMHKDGPPPNDYCYNAAISACGKSGQWREAKELLSTMRDRGVPPDLISYNSAIDA 313



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 85/243 (34%), Gaps = 35/243 (14%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +++++    +  + ++      +M+  G   D   Y  LI+ CG+    ++A+    EM+
Sbjct: 61  YNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACLIAACGRGMQWERALISLAEMR 120

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYAGLITAHTNKIPR 197
              +K N   Y   ++ACA   Q      ++RDM    G   +  CY     A  +   +
Sbjct: 121 DVGIKANSFVYSAAIDACAKGRQWQKALILLRDMEVVDGLPANLICY----NAAADACGK 176

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL 257
           A      +  L +  K                +GV   E+  L       R G +   LL
Sbjct: 177 AGRPGEALALLAKMQK----------------VGVKPNEVSYLSVISACSRVGDWKRALL 220

Query: 258 TV--------------YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
            +              Y  A  AC +    +    LL ++ KD   P+ Y     I    
Sbjct: 221 LLDEMIVMGVQPDLKCYCSAITACGKGGRWKQALGLLNIMHKDGPPPNDYCYNAAISACG 280

Query: 304 HSG 306
            SG
Sbjct: 281 KSG 283



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/117 (20%), Positives = 50/117 (42%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    + + I    +G + Q    F + M+  G      V+   ++ C +     + I  
Sbjct: 350 PDATTYGAAITACSRGKQWQMALRFLEDMEKKGVERTEGVFQATLAGCARMGRWRECIVT 409

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            ++M+K  ++P    Y  ++ AC   G+     AI++ M++ GA  D      ++T+
Sbjct: 410 LDQMRKSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMSSRGATPDVITLNAVMTS 466



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y + +T+     R+     + + M  DG  P    +++ I    K  + ++       M+
Sbjct: 237 YCSAITACGKGGRWKQALGLLNIMHKDGPPPNDYCYNAAISACGKSGQWREAKELLSTMR 296

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEV------------KPNGQTYV 150
             G  PD+  YN  I  CGK    ++ ++IF  M K  EV             P+  TY 
Sbjct: 297 DRGVPPDLISYNSAIDACGKGGRWEEGLKIFVGMVKASEVPWDADMGHPKPPTPDATTYG 356

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
             + AC+   Q       + DM   G
Sbjct: 357 AAITACSRGKQWQMALRFLEDMEKKG 382



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           D M   G+QP    ++S+I    +G   Q       QM + G  PDV   N +++ C + 
Sbjct: 411 DQMRKSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMSSRGATPDVITLNAVMTSCAQS 470

Query: 125 KNSDQAIRIFEEMK 138
           +   QA  I + M+
Sbjct: 471 QRWKQARVILDFMR 484


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 11/183 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN ++  L          ++Y  M+L+G++P+   F +L+V T K    +      
Sbjct: 193 NAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLL 252

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M++ G  P++  Y   I V G+    D+A RI + M+     P+  TY  L++A   A
Sbjct: 253 EEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTA 312

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
           G+LD    +   M A+    D+  Y  ++           D  +   +L    + WS +E
Sbjct: 313 GKLDDAMELFVKMKASSHKPDRVTYITML-----------DKFSDCGDLGRVKEFWSEME 361

Query: 220 TSG 222
             G
Sbjct: 362 ADG 364



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            N   +N ++ +L          D++ D++     PT   +  L+ G +K  RL++     
Sbjct: 859  NTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELF 918

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            ++M   G  P+ A+YN LI+  GK  + + A  +F+ M +  ++P+ ++Y  L+     A
Sbjct: 919  EEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEA 978

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            G++D        +   G  LD   Y  +I
Sbjct: 979  GRVDDALHYFEKLKQTGLYLDSIAYNLMI 1007



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 14/243 (5%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           F  +M+A+G+ PDV  +  L++   K  N D+A  + + M+K  V PN  TY  L++   
Sbjct: 356 FWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLL 415

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK--GW 215
              +LD    +  +M   G     + Y   I  +  K  R+D    K +E  E+ K  G 
Sbjct: 416 RVNRLDDALDLFNNMETLGVVPTAYTYILFIDFY-GKSGRSD----KALETFEKMKIRGI 470

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR--GGFLSRLLTVYHVAFHACAELKDV 273
           +    + N +       S  E+  L  A+ +  R     L+     Y++     ++   V
Sbjct: 471 APNIVACNASL-----YSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQV 525

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
                LL  + +++  PD+ ++   I     +G +D   K+F      +  P    Y TL
Sbjct: 526 DEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTL 585

Query: 334 VEG 336
           + G
Sbjct: 586 IAG 588



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%)

Query: 79   FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
            ++ +I G  +  R+++     D+M++ G  PD+  YN LI   G     +QA +++EE++
Sbjct: 1003 YNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQ 1062

Query: 139  KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
               ++PN  TY  L+   + +G  D  YA+ + M   G   +   +A L
Sbjct: 1063 FIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           YA +   +  +V +L           + D M   GV P    +++LI G ++ +RL D  
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL 424

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + M+  G +P    Y   I   GK   SD+A+  FE+MK   + PN       L + 
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           A  G+L     I   + + G   D   Y  ++  ++
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYS 520



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           +++ + +M  DG  P    F  L+    K   + + F   D M+  G LP++  YN LIS
Sbjct: 353 VKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLIS 412

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
              +    D A+ +F  M+   V P   TY+  ++    +G+ D        M   G
Sbjct: 413 GLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRG 469



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 69/153 (45%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            N + YN ++             +++  M+ +G++P    + SL+    +  R+ D   + 
Sbjct: 929  NNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYF 988

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++K  G   D   YN +I   G+    ++A+ +++EM+   + P+  TY  L+     A
Sbjct: 989  EKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVA 1048

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            G ++    +  ++   G   + F Y  LI  ++
Sbjct: 1049 GMVEQAGKLYEELQFIGLEPNVFTYNALIRGYS 1081



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 100/249 (40%), Gaps = 8/249 (3%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           DG  P    +  LI       +L D      +MKA+   PD   Y  ++     C +  +
Sbjct: 293 DGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGR 352

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
               + EM+     P+  T+  L+NA   AG +D  + ++  M   G   +   Y  LI+
Sbjct: 353 VKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLIS 412

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN-EMMGVSKEELYNLPTAEYVHR 248
               ++ R DD     ++L    +    V T+       +  G S      L T E +  
Sbjct: 413 GLL-RVNRLDDA----LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKI 467

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
           RG  ++  +   + + ++ AE+  ++  + +   LK +  +PD       ++CY  +G +
Sbjct: 468 RG--IAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQV 525

Query: 309 DNGHKVFED 317
           D   ++  D
Sbjct: 526 DEAIELLSD 534



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + ++ M + G+ P     ++ +    +  RL++     +++K+NG  PD   YN ++   
Sbjct: 460 ETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCY 519

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI---VRDMTAA 175
            K    D+AI +  +M + + +P+      L+N    AG++D  + +   ++DM  A
Sbjct: 520 SKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLA 576



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 115/296 (38%), Gaps = 6/296 (2%)

Query: 38   ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
            A +   YN ++ +     +   L ++Y+ M+    +P     + +I   +K + L     
Sbjct: 822  APDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALD 881

Query: 98   FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
                + +  F P    Y  L+    K    ++A  +FEEM  Y  +PN   Y  L+N   
Sbjct: 882  LFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFG 941

Query: 158  AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
              G ++    + + M   G   D   Y  L+     +  R DD A    E ++Q+  +  
Sbjct: 942  KTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLC-EAGRVDD-ALHYFEKLKQTGLY-- 997

Query: 218  VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
            +++   N   + +G S      L   + +  RG  ++  L  Y+           V+   
Sbjct: 998  LDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRG--INPDLFTYNSLILNLGVAGMVEQAG 1055

Query: 278  TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             L E L+     P+V+     IR Y  SG+ D+ + V++  +     P    +A L
Sbjct: 1056 KLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 60/148 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R  A N    N  + SL    R    + +++ +  +G+ P    ++ ++    K 
Sbjct: 463 EKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKA 522

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +       M  N   PD+ V N LI+   K    D+A ++F  +K  ++ P   TY
Sbjct: 523 GQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTY 582

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGA 177
             L+      GQ+     +   MT  G 
Sbjct: 583 NTLIAGLGKEGQVQRAMELFASMTGNGC 610



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 48/111 (43%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L    R      +YD+M   G+ P    ++SLI+       ++      ++++
Sbjct: 1003 YNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQ 1062

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              G  P+V  YN LI       NSD A  +++ M      PN  T+  L N
Sbjct: 1063 FIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQLPN 1113



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 53/127 (41%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  DM  +  +P   + +SLI    K  R+ + +    ++K     P V  YN LI+  
Sbjct: 530 ELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGL 589

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK     +A+ +F  M      PN  T+  +L+      ++D    ++  MT      D 
Sbjct: 590 GKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDV 649

Query: 182 FCYAGLI 188
             +  +I
Sbjct: 650 LTFNTII 656



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  + +     +++  M  +G  P    F++++    K   +        +M 
Sbjct: 582 YNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMT 641

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
               +PDV  +N +I      K    AI +F +MKK  + P+  T   LL      G ++
Sbjct: 642 TMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDCVTLCTLLPGVVKNGLME 700

Query: 164 PVYAIVRD 171
             + I  D
Sbjct: 701 DAFKIAED 708



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 62/147 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++          +  +++ +M   G  P    ++ L+    K  ++ + F   +QM 
Sbjct: 793 YNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMI 852

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   P+   +N +I+   K  + D+A+ +F ++   +  P   TY  LL+    +G+L+
Sbjct: 853 CSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLE 912

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +  +M   G   +   Y  LI  
Sbjct: 913 EAKELFEEMVDYGCRPNNAIYNILING 939


>gi|440792915|gb|ELR14122.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 593

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 79  FHSLIVGTM-KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           F + ++GT+     L+      D++KA    PD  +YN LI+ C K     QA+ I+E+M
Sbjct: 114 FFTWLIGTLGDQGMLKQALLVLDKIKAAKVKPDAIIYNSLINSCAKMNRMKQALHIYEDM 173

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +   +  + +T   ++N  +  G +D V  +  +M A+G  LD F Y  ++ A+
Sbjct: 174 RAQGIPTDQRTLSAVMNVFSRMGDIDRVKTLKAEMEASGQKLDSFNYGCVMKAY 227



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%)

Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           D+  + +LI   G      QA+ + +++K  +VKP+   Y  L+N+CA   ++     I 
Sbjct: 111 DMRFFTWLIGTLGDQGMLKQALLVLDKIKAAKVKPDAIIYNSLINSCAKMNRMKQALHIY 170

Query: 170 RDMTAAGAGLDKFCYAGLI 188
            DM A G   D+   + ++
Sbjct: 171 EDMRAQGIPTDQRTLSAVM 189



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V D +    V+P   +++SLI    K +R++      + M+A G   D    + +++V  
Sbjct: 134 VLDKIKAAKVKPDAIIYNSLINSCAKMNRMKQALHIYEDMRAQGIPTDQRTLSAVMNVFS 193

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI---VRDMTAAGA-G 178
           +  + D+   +  EM+    K +   Y C++ A    G+++ + A+   ++D   AG   
Sbjct: 194 RMGDIDRVKTLKAEMEASGQKLDSFNYGCVMKAYGQNGRVEDLLALWDEIKDKEKAGQLD 253

Query: 179 LDKFCY 184
           +D + Y
Sbjct: 254 VDSYLY 259


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  +       +++D+M+  G+ P    F +LI G  K  R+        QM 
Sbjct: 215 YSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQML 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD   YN L    G CK  D  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 275 SQXLXPDFITYNTLXY--GLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 332

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           LD  +   + M      LD   Y  LI+ 
Sbjct: 333 LDAAFEHRKRMIQENIXLDDVAYTALISG 361



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   GVQP    +  LI G  K S + D     D+M   G +P+   +  LI   G CKN
Sbjct: 203 MXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLID--GHCKN 260

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L       G L+  + ++ +M+  G   DKF Y
Sbjct: 261 GRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTY 320

Query: 185 AGLI 188
             LI
Sbjct: 321 TTLI 324



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 62/165 (37%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N+  + T++       R  L  ++Y  M+   + P    +++L  G  K 
Sbjct: 236 DEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKK 295

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L       D+M   G  PD   Y  LI  C K  + D A    + M +  +  +   Y
Sbjct: 296 GDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAY 355

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M + G   D   Y  +I     K
Sbjct: 356 TALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKK 400



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+   L  +        + D+M + G++P +  + +LI G  K   L   F  R +M 
Sbjct: 285 YNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMI 344

Query: 104 ANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                 D   Y  LIS  G C+   S  A ++  EM    +KP+  TY  ++N     G 
Sbjct: 345 QENIXLDDVAYTALIS--GLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGD 402

Query: 162 LDPVYAIVRDMTAAG 176
           +      +++M   G
Sbjct: 403 VWKGXKXLKEMQRNG 417


>gi|224576643|gb|ACN56995.1| At1g03560-like protein [Capsella grandiflora]
          Length = 196

 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +      N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRXNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 40/98 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     +G       + SLI G  K  R+ +     ++M 
Sbjct: 60  YSVVVNGLCKNGRVEEALDYFQTCRXNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMS 119

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K    D+A+ +F+ M++ E
Sbjct: 120 EKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEE 157


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L    RF +   V   MM  G +P      SLI G  +G+R+ D      +M+
Sbjct: 48  YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 107

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV +YN +I   G CK    + A+ +F+ M++  V+ +  TY  L+     +G+
Sbjct: 108 EMGFRPDVVIYNTIID--GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 165

Query: 162 LDPVYAIVRDMT 173
                 ++RDM 
Sbjct: 166 WSDAARLMRDMV 177



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 122/325 (37%), Gaps = 15/325 (4%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD---VYDDMMLDG 71
           G   G R F       +     +  +   YNT++       +  L+ D   ++D M  DG
Sbjct: 89  GFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDG---SCKIGLVNDAVELFDRMERDG 145

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           V+     ++SL+ G     R  D       M     +P+V  +  +I V  K     +A+
Sbjct: 146 VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAM 205

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +++EEM +  V P+  TY  L+N     G++D    ++  M   G   D   Y  LI   
Sbjct: 206 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 265

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
             K  R D+  TK+   + Q +G      + N          + +      A+ +  R  
Sbjct: 266 C-KSKRVDE-GTKLFREMAQ-RGLVGDTITYNTIIQGYFQAGRPD-----AAQEIFSRMD 317

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
               + T   + +  C   +  +A+  L E ++K     D+      I      G++++ 
Sbjct: 318 SRPNIRTYSILLYGLCMNWRVEKAL-VLFENMQKSEIELDITTYNIVIHGMCKIGNVEDA 376

Query: 312 HKVFEDYICSEKFPPAELYATLVEG 336
             +F    C    P    Y T++ G
Sbjct: 377 WDLFRSLSCKGLKPDVVSYTTMISG 401



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 2/171 (1%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RF +  +   +  +  Y  +    ++++       R F   D+   M   G +P   +++
Sbjct: 60  RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 119

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKK 139
           ++I G+ K   + D     D+M+ +G   D   YN L++ +C   + SD A R+  +M  
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA-RLMRDMVM 178

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            ++ PN  T+  +++     G+      +  +MT      D F Y  LI  
Sbjct: 179 RDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 229



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 34/198 (17%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  RR    +   YN+++  L    R    + + D M+  G  P    +++LI G  K 
Sbjct: 209 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 268

Query: 90  SRLQD-TFFFRDQMKANGFLPDVAVYN------------------------------YLI 118
            R+ + T  FR +M   G + D   YN                              Y I
Sbjct: 269 KRVDEGTKLFR-EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSI 327

Query: 119 SVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            + G C N   ++A+ +FE M+K E++ +  TY  +++     G ++  + + R ++  G
Sbjct: 328 LLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKG 387

Query: 177 AGLDKFCYAGLITAHTNK 194
              D   Y  +I+    K
Sbjct: 388 LKPDVVSYTTMISGFCRK 405


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 127/318 (39%), Gaps = 30/318 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E     Y  N   +N ++  L  + +    + ++D++   G+QPT   F++LI G  K  
Sbjct: 222 EILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSG 281

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            L++ F  +  M+     PDV  Y+ LI  +C +C+  D A  +F+EM    + PN  T+
Sbjct: 282 NLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLED-ANHLFKEMCDRGLVPNDVTF 340

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L+N     G++D    I + M   G   D   Y  LI           D   K     
Sbjct: 341 TTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLI-----------DGLCKGGYFR 389

Query: 210 EQSKGWSSVETSGNNAE-----NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
           E  K    +   G   +       + G  KE    L     +  R   +   + + +VAF
Sbjct: 390 EARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELA----LEMRKEMVKEGIQLDNVAF 445

Query: 265 HA-----CAELKDVQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDY 318
            A     C + K V A  TL EML+   K  D  Y ++ +  C    GD+  G K+ ++ 
Sbjct: 446 TAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFC--KKGDVKMGFKLLKEM 503

Query: 319 ICSEKFPPAELYATLVEG 336
                 P    Y  L+ G
Sbjct: 504 QSDGHIPGVITYNVLMNG 521



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    N   + T++       R  L  ++Y  M   G++    L+++LI G  KG
Sbjct: 326 KEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKG 385

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
              ++   F  +M   G +PD   Y  L+   G CK  D   A+ + +EM K  ++ +  
Sbjct: 386 GYFREARKFVGEMTKRGLIPDKFTYTTLLD--GSCKEGDLELALEMRKEMVKEGIQLDNV 443

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAG 186
            +  +++     G++      +R+M  AG           +D FC  G
Sbjct: 444 AFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKG 491



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 4/163 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +R    +   Y T++     +    L  ++  +M+ +G+Q     F ++I G  +  
Sbjct: 397 EMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDG 456

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQT 148
           ++ D      +M   G  PD   Y  ++   G CK  D     ++ +EM+     P   T
Sbjct: 457 KIVDAERTLREMLRAGLKPDDGTYTMVMD--GFCKKGDVKMGFKLLKEMQSDGHIPGVIT 514

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           Y  L+N     GQ+     ++  M   G   D   Y  L+  H
Sbjct: 515 YNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGH 557


>gi|399107196|gb|AFP20362.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 82  BEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 190


>gi|356560456|ref|XP_003548508.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g77405-like [Glycine max]
          Length = 477

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 15/185 (8%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-----------HSLIVGTMK 88
           +   YNT++ +L     F   R +   M L G +   D F           H ++ G  K
Sbjct: 226 DTHSYNTLIHALCRVGNFAKARSILQQMELPGFRCPPDTFTYSILISSYCRHGILTGCWK 285

Query: 89  GSR---LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
            +R    +    FR  M     +PDV  YN LI  C K    ++A+ +F++MK+  V PN
Sbjct: 286 ATRRRIYEAGRLFR-LMLFRKLVPDVVTYNALIDGCCKTLRMERALELFDDMKRSGVVPN 344

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY C ++   A  ++D    ++R+M   G G+        I     +  R  +    +
Sbjct: 345 RVTYGCFVSYYCAVNEIDKGVEMLREMQRLGDGVASSSLYTPIIHALCEAGRVVEACGFL 404

Query: 206 IELVE 210
           +ELVE
Sbjct: 405 VELVE 409


>gi|341605731|gb|AEK82968.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605733|gb|AEK82969.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605735|gb|AEK82970.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRXNGXAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 4   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 64  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNGXAINSM 123

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 124 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 151


>gi|399107206|gb|AFP20367.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 190


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 5/198 (2%)

Query: 17  ALGRRFFVTSAGAE-EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           +LGR      A A  E  +  +  N   Y  ++      +       V+++M+  G +P 
Sbjct: 207 SLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPD 266

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
               + ++ G ++  +  D       MKA G  PDV  Y  LI    +    ++A+  F+
Sbjct: 267 IVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQ 326

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-K 194
           EM     KP+   Y CL+       ++D VY ++++M   G   D   Y  LI   T  K
Sbjct: 327 EMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLK 386

Query: 195 IPRADDTATKIIELVEQS 212
           +P   D A +I + + QS
Sbjct: 387 MP---DDAARIYKKMTQS 401



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF  +       ++ + +++  YN++++ L   R+F  +  + ++M   GV  T D F 
Sbjct: 114 RFFCWAG-----EKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVL-TMDTFS 167

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
             +         +      + MK   +   V   N+L+   G+ K   +A  +FE +K  
Sbjct: 168 IAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKG- 226

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
              PN +TY  LLN       L    ++  +M   G   D   +  ++        R+D 
Sbjct: 227 RFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSD- 285

Query: 201 TATKIIELVEQSKGWS 216
            A K+  +V ++KG S
Sbjct: 286 -AIKLF-MVMKAKGPS 299


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 23/242 (9%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G   +V  YN L+ V  K K  D+AI++F  M +   +PN  TY  LLN   A 
Sbjct: 294 NEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAE 353

Query: 160 GQ---LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           GQ   LD V  I +     G       Y+ L+    +K+    +      ++      WS
Sbjct: 354 GQLVRLDGVVEISKRYMTQGI------YSYLVRT-LSKLGHVSEAHRLFCDM------WS 400

Query: 217 SVETSGNNAENEMM----GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
                  ++   M+    G  K  +  +     +H +G     ++  Y+  F A  +LK 
Sbjct: 401 FPVKGERDSYMSMLESLCGAGK-TIEAIEMLSKIHEKGVVTDTMM--YNTVFSALGKLKQ 457

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           +  +  L E +KKD  SPD++     I  +   G++D    +FE+   S+  P    Y +
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNS 517

Query: 333 LV 334
           L+
Sbjct: 518 LI 519



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKG-SRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           V D MM + V      F +L  G +K  S + D F   ++MK +G  PD+  YN LI+  
Sbjct: 439 VTDTMMYNTV------FSAL--GKLKQISHIHDLF---EKMKKDGPSPDIFTYNILIASF 487

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+    D+AI IFEE+++ + KP+  +Y  L+N     G +D  +   ++M   G   D 
Sbjct: 488 GRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDV 547

Query: 182 FCYAGLI 188
             Y+ L+
Sbjct: 548 VTYSTLM 554



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 66/134 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV ++L   ++   + D+++ M  DG  P    ++ LI    +   + +     ++++
Sbjct: 445 YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE 504

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   PD+  YN LI+  GK  + D+A   F+EM++  + P+  TY  L+       +++
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE 564

Query: 164 PVYAIVRDMTAAGA 177
             Y++  +M   G 
Sbjct: 565 MAYSLFEEMLVKGC 578



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 72/364 (19%), Positives = 139/364 (38%), Gaps = 55/364 (15%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP---TRDLFHSLIVGTMKGSRLQDTF 96
           N   YNT++  L   +       V+  M+  G +P   T  L  +L+V   +  RL    
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVV 363

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +    G      +Y+YL+    K  +  +A R+F +M  + VK    +Y+ +L + 
Sbjct: 364 EISKRYMTQG------IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESL 417

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             AG+      ++  +   G   D   Y  + +A   K+ +     + I +L E+ K   
Sbjct: 418 CGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSA-LGKLKQ----ISHIHDLFEKMKK-- 470

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
                                 + P+ +            +  Y++   +   + +V   
Sbjct: 471 ----------------------DGPSPD------------IFTYNILIASFGRVGEVDEA 496

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             + E L++    PD+      I C   +GD+D  H  F++       P    Y+TL+E 
Sbjct: 497 INIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLME- 555

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
             FG T + +++A      M  +     P + +  +L+   EK+G    A  ++  M+ +
Sbjct: 556 -CFGKTER-VEMAYSLFEEMLVKGC--QPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQ 611

Query: 397 KITP 400
            +TP
Sbjct: 612 GLTP 615



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 53/126 (42%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++++     +P    ++SLI    K   + +      +M+  G  PDV  Y+ L+   
Sbjct: 498 NIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECF 557

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK +  + A  +FEEM     +PN  TY  LL+     G+      +   M   G   D 
Sbjct: 558 GKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDS 617

Query: 182 FCYAGL 187
             Y  L
Sbjct: 618 ITYTVL 623



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +++  G   D+  YN L+    K    ++A ++FE+MKK   + +  TY  ++      G
Sbjct: 228 EIRRGGHKLDIFAYNMLLDALAK---DEKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIG 284

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAHTNKIPRADDTATKIIE 207
           + D    +  +M   G  L+   Y  L  + A    + +A    ++++E
Sbjct: 285 KCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVE 333



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 78  LFHSLIVGTMKGSRLQDTF----FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
             ++ I+  +  S L D F       D M  +    +++  N LI   G  ++    +R+
Sbjct: 134 FLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRL 193

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
              +KK+++K N  TY CLL A   +      + +  ++   G  LD F Y  L+ A   
Sbjct: 194 ---VKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAK 250

Query: 194 KIPRADDTATKIIE 207
                D+ A ++ E
Sbjct: 251 -----DEKACQVFE 259


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 76/159 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + Y +    YNT+++ L   +      ++Y  +M +G  PT   +  L+ G +K 
Sbjct: 128 EEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKD 187

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++D     D+M   G  P+ A+YN L++      ++++   +FE M +  + P+ ++Y
Sbjct: 188 GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 247

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +++   A G+L+   +  + +T  G   D   Y  LI
Sbjct: 248 TVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLI 286



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 117/306 (38%), Gaps = 16/306 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L  +    +  +++ +M   G  P    +H ++    K  R++D    +++M 
Sbjct: 72  YNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMH 131

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G+      YN +IS   K K  D+AI ++ ++      P   TY  LL+     G ++
Sbjct: 132 NKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIE 191

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
              A+  +M   G   +   Y  L+  +     R      K+ EL E      S+   G 
Sbjct: 192 DAEALFDEMLECGCEPNCAIYNILLNGY-----RIAGDTEKVCELFE------SMVEQGM 240

Query: 224 NAENEMMGVSKEEL-----YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
           N + +   V  + L      N   + +       L   L  Y++  H   +   ++   +
Sbjct: 241 NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 300

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
           L   ++K   +P++Y     I     +G      K++E+ +     P    Y  L+ G  
Sbjct: 301 LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYS 360

Query: 339 FGYTPK 344
              +P+
Sbjct: 361 VSGSPE 366



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  V+ +L +  R       +  +   G++P    ++ LI G  K  RL++     + M+
Sbjct: 247 YTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDME 306

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P++  YN LI   GK   + +A +++EE+     KPN  TY  L+   + +G  +
Sbjct: 307 KKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPE 366

Query: 164 PVYAIVRDMTAAGA 177
             +A    M   G 
Sbjct: 367 NAFAAYGRMIVGGC 380



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    R      +Y+DM   G+ P    ++SLI+   K  +  +     +++ 
Sbjct: 282 YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELL 341

Query: 104 ANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           A G+ P+V  YN LI   SV G  +N   A   +  M     +PN  TY+ L N
Sbjct: 342 AKGWKPNVFTYNALIRGYSVSGSPEN---AFAAYGRMIVGGCRPNSSTYMQLPN 392


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G +P    + +L+ G     ++ D +     M+  GF P+   Y  LI    K    ++A
Sbjct: 258 GFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEA 317

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +++F EM++YE + +  TY  L++     G++D  Y ++ DM   G    +  Y  ++ A
Sbjct: 318 MKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVA 377

Query: 191 HTNKIPRADDTATKIIELVEQSK 213
           H  K     ++  + +EL+E+ +
Sbjct: 378 HEKK-----ESFEECLELMEKMR 395



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 24/212 (11%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            G LG RFFV +A      +  Y ++   Y ++V  L+  R+F  +  + ++M  +  Q 
Sbjct: 119 AGNLGYRFFVWAA-----KQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 173

Query: 75  TR-DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
              +LF  L+        ++      D+M   GF PD  V+  L+    K  +   A ++
Sbjct: 174 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 233

Query: 134 FEEMK---------KYEV--------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           FE+M+         KY +        +P+   Y  LL+  A AG++   Y ++RDM   G
Sbjct: 234 FEDMRMRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRG 293

Query: 177 AGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
              +  CY  LI A   K+ R ++     +E+
Sbjct: 294 FEPNANCYTVLIQALC-KVDRMEEAMKVFVEM 324



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V DDM+  G+ P+   +  ++V   K    ++     ++M+   + PD+ +YN +I +  
Sbjct: 355 VLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLAC 414

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K     +A+R++ EM++  + P   T+V ++N  A+ G L
Sbjct: 415 KLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCL 454



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 2/151 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR +  NA+ Y  ++ +L    R      V+ +M     +     + +L+ G  K  ++ 
Sbjct: 291 RRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKID 350

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
             +   D M   G +P    Y +++    K ++ ++ + + E+M++ E  P+   Y  ++
Sbjct: 351 KCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVI 410

Query: 154 NACAAAGQLDPVYAIVRDMTAAG--AGLDKF 182
                 G++     +  +M   G   G+D F
Sbjct: 411 RLACKLGEVKEAVRLWNEMEENGLSPGVDTF 441


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 21/290 (7%)

Query: 63  VYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           V+ D+   G + P+   ++ +I G  K   + +       ++  GF+P+V  YN +I+  
Sbjct: 134 VFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGL 193

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K +    A R+  E   +  +PN  TY  ++  C   G+L+    I+ +M   G   D 
Sbjct: 194 CKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDG 253

Query: 182 FCYAGLITA--HTNKIPRADDTATKIIE--LVEQSKGWSS---VETSGNNAENEMMGVSK 234
           F Y  ++ A   T +I  AD+ A K++   LV     +++   +       +  +  V +
Sbjct: 254 FAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDE 313

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
            E   +   +Y H              +  H   +  + +  E  L+ +       ++  
Sbjct: 314 IEKQGMKCDQYTH-------------TIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVA 360

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
               + C   +GDID   KVF+     + F    L   L     F    K
Sbjct: 361 FNSILDCLGKAGDIDKAVKVFDSMEVKDSFTYTSLLHNLCRAKKFRIASK 410



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 69/150 (46%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E+    +  NA  Y TV+       R     ++  +M   G       + +++   +K  
Sbjct: 208 EFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTG 267

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+++     ++M +NG +PD+A YN +I++  +    D+A+R+ +E++K  +K +  T+ 
Sbjct: 268 RIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHT 327

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            +++     G  +     +  M   G G +
Sbjct: 328 IIIHGLCKDGNFEGAEKHLDYMNTLGFGFN 357



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 65/155 (41%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR +      YN ++  L   RR    R V ++    G +P    + +++    +  RL+
Sbjct: 176 RRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLE 235

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  +M+  GF  D   Y  +++   K    ++A  I E+M    + P+  +Y  ++
Sbjct: 236 QGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMI 295

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           N     G+ D    +V ++   G   D++ +  +I
Sbjct: 296 NLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIII 330



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 29  AEEYARRNYAN----NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           A+E A +  +N    + + YNT++     Q RF     + D++   G++  +     +I 
Sbjct: 272 ADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIH 331

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G  K    +      D M   GF  ++  +N ++   GK  + D+A+++F+ M   EVK 
Sbjct: 332 GLCKDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSM---EVK- 387

Query: 145 NGQTYVCLL-NACAA 158
           +  TY  LL N C A
Sbjct: 388 DSFTYTSLLHNLCRA 402


>gi|295830921|gb|ADG39129.1| AT5G21222-like protein [Neslia paniculata]
          Length = 166

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       +QMK
Sbjct: 13  YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEQMK 72

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ E M + E ++PN +T   L+ A     ++
Sbjct: 73  ESGCKPTTSTFNTLIKGYGKLGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKV 132

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +  + IV  M + G   D   +  L  A+
Sbjct: 133 EEAWQIVYKMQSYGVKPDVVTFNTLARAY 161



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   +  N
Sbjct: 1   LIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 61  LDQAMKIFEQMKESGCKPTTSTFNTLIKGYGKLGKLE 97


>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 484

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 71/150 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +   +  + R+ + +  ++ M+ +G++PTR  F+ +I G     +++    F + MK
Sbjct: 118 YDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETANRFFEDMK 177

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    PDV  YN +I+   + K  ++A + F EMK   ++P   T   L+    +  ++D
Sbjct: 178 SRXITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVD 237

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               +  +M   G   +   Y+ L+    N
Sbjct: 238 DALRLXEEMKGFGIKPNAITYSTLLPGLCN 267



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF      E+   R    +   YNT++      ++       + +M    ++PT     
Sbjct: 171 RFF------EDMKSRXITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXT 224

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKK 139
           +LI G +   R+ D     ++MK  G  P+   Y+ L+  +C   K S+    + E + K
Sbjct: 225 TLIKGYVSVDRVDDALRLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSXLKEMVDK 284

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDP----VYAIVRDMTAAGAG-----LDKFCYAG 186
           Y    +   ++ L++    AG LD     + A++R      AG     ++ +C AG
Sbjct: 285 YIAPTDNSIFLRLISGQCKAGNLDAAADVLQAMIRLSVPTEAGHYGVLIENYCKAG 340


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNTV+ ++  S+   F +R V+ +M   G +P    ++++I    +  R+++ +   DQM
Sbjct: 391 YNTVIRAIGLSEGVDFSIR-VFREMKEVGCEPNVVTYNTIIKLLCENGRIREAYGVFDQM 449

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +  G+ P+V  Y+       K K   Q +R F+ M    V+P   TYV L+      G L
Sbjct: 450 REKGYAPNVITYHCFFGCIEKPK---QILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFL 506

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            PV+ + + M   G   D   Y  LI A   K
Sbjct: 507 RPVFIVWKKMEEQGCSPDACAYNALIDALVQK 538



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +MK  G   DV  YN +I   G  +  D +IR+F EMK+   +PN  TY  ++      G
Sbjct: 378 EMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKEVGCEPNVVTYNTIIKLLCENG 437

Query: 161 QLDPVYAIVRDMTAAGAG---LDKFCYAGLI 188
           ++   Y +   M   G     +   C+ G I
Sbjct: 438 RIREAYGVFDQMREKGYAPNVITYHCFFGCI 468


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E+    +  +   Y+ +   L  + R     ++  +M  +G  P    +++LI G  K 
Sbjct: 104 DEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKA 163

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
           S+ +  +   + + ++GF+PDV  Y  ++   G CK    D+A+++ E M K    P+  
Sbjct: 164 SKTEKAYELLETLVSSGFVPDVVTYTIIVD--GLCKEGRLDKALKMVEGMLKRGCTPSVI 221

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           TY  L+      G++D  + I ++M +     D   Y  L+  +
Sbjct: 222 TYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGY 265



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     + R   + +V++DM   G  P    ++ ++ G  K  ++ + F F + M 
Sbjct: 290 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 349

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G +PDV  YN +I    K     +A ++ ++M +  + P+  TY  L+       + D
Sbjct: 350 SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFD 409

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
               I+++M  AG   D   Y  LI+  + TN++  A
Sbjct: 410 DAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA 446



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 65/156 (41%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A RN   +   YNT+++ L  Q+     + + D+ +  G  P    +  L  G  K  R+
Sbjct: 72  AERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRI 131

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            + F    +M  NG  P++  YN LI    K   +++A  + E +      P+  TY  +
Sbjct: 132 DEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTII 191

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++     G+LD    +V  M   G       Y  L+
Sbjct: 192 VDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 227



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 118/304 (38%), Gaps = 45/304 (14%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R  A +   YN ++  L    +     ++  +M+  GV P    F+S++ G  K  + + 
Sbjct: 4   RKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFER 63

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  M      P    YN LIS   K +N D+A  + +E       P+  TY  L +
Sbjct: 64  AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILAD 123

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIELVEQS 212
                G++D  + +V++M+  G      C   L+T +T  + + +A  T           
Sbjct: 124 GLCKRGRIDEAFELVKEMSGNG------CTPNLVTYNTLIDGLCKASKT----------E 167

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
           K +  +ET  ++                          GF+  ++T   +    C E + 
Sbjct: 168 KAYELLETLVSS--------------------------GFVPDVVTYTIIVDGLCKEGRL 201

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
            +A++ +  MLK+   +P V      +     +G +D  H +F++ +  +    A  Y +
Sbjct: 202 DKALKMVEGMLKRG-CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVS 260

Query: 333 LVEG 336
           LV G
Sbjct: 261 LVNG 264



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 124/337 (36%), Gaps = 32/337 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ A R    N   YN V+  L    +        + M   G  P    ++ +I G  K 
Sbjct: 311 EDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKA 370

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           S+ ++     DQM   G  PD   YN L++   K +  D A+ I + M K  V P+  TY
Sbjct: 371 SKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTY 430

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAG----------LDKFCYAG------LITAHTN 193
             L++  +   +L   Y ++ +M   G            +D+ C  G      L+  H  
Sbjct: 431 NTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMT 490

Query: 194 KIPRADDTATKII---------ELVEQSKGWSSVETSGNNAE--NEMMGVSKEELYNLPT 242
                 +T T  I          L E S   S ++T  +       ++G+ K E   L  
Sbjct: 491 GHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAE--QLDR 548

Query: 243 AEYVHRRGGFLSRLLTVYH---VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
           A  + R    +  L    H   +   A  + K +    TLLE++ +   SP V      I
Sbjct: 549 ASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVI 608

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            C      +D   ++F++         +  Y  L+ G
Sbjct: 609 TCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYG 645



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 126/321 (39%), Gaps = 39/321 (12%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   +N+++  L    +F     +   M     +P+   +++LI G  K  
Sbjct: 35  EMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQ 94

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
            +       D+  ++GF+PDV  Y+ L    G CK    D+A  + +EM      PN  T
Sbjct: 95  NVDRAKTLVDEFVSSGFVPDVVTYSILAD--GLCKRGRIDEAFELVKEMSGNGCTPNLVT 152

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++    A + +  Y ++  + ++G   D   Y  +I     K  R  D A K++E 
Sbjct: 153 YNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYT-IIVDGLCKEGRL-DKALKMVEG 210

Query: 209 VEQSKGWSSVETSGNNAE--------NEMMGVSKEELYNLPTAE---YVHRRGGFLSRLL 257
           + +     SV T     E        +E   + KE +    TA+   YV    G+     
Sbjct: 211 MLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKS-- 268

Query: 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNIRCYLHSGDIDNGHKVF 315
                     +  K+ Q      +++   R +P  DVY  + +   Y   G +D    VF
Sbjct: 269 ----------SRTKEAQ------KVVDGIRGTPYIDVYNALMDG--YCKEGRLDEIPNVF 310

Query: 316 EDYICSEKFPPAELYATLVEG 336
           ED  C    P  + Y  +++G
Sbjct: 311 EDMACRGCVPNIKTYNIVMDG 331



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 1/140 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           Y TV+  L    +      +  +M+ + G+  T   F+ LI    K  RL +     + M
Sbjct: 533 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELM 592

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              G  P V  YN +I+   K    D+A  +F+EM    +  +  +Y  L+      G+ 
Sbjct: 593 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRG 652

Query: 163 DPVYAIVRDMTAAGAGLDKF 182
                ++ +M ++   +D  
Sbjct: 653 KEALQVLEEMASSDCEIDDL 672



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 68  MLDGVQ--PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           ++DG++  P  D++++L+ G  K  RL +     + M   G +P++  YN ++   G CK
Sbjct: 277 VVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMD--GLCK 334

Query: 126 NS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
           +   D+A    E M      P+  +Y  +++    A +      ++  M  AG   D   
Sbjct: 335 HGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 394

Query: 184 YAGLITAHTNKIPRADD 200
           Y  L+ A   K  R DD
Sbjct: 395 YNTLM-AQFCKEERFDD 410


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 69/159 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R +   +    + ++ SL    +    RDV+D M + G  P    ++ ++ G    
Sbjct: 316 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 375

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L D     D M  +G  PD   +N LI     C   D+A+ IF EM+ + VKP+  TY
Sbjct: 376 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 435

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             ++ A    G++D        M   G   DK+ Y  LI
Sbjct: 436 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 474



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 62/145 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++    ++     + D++D M+ DG+ P    F+ LI        L       ++M+
Sbjct: 365 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  PDV  Y  +I+   +    D A+  F +M    V P+   Y CL+      G L 
Sbjct: 425 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 484

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++ ++   G  LD   ++ +I
Sbjct: 485 KAKELISEIMNNGMHLDIVFFSSII 509



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 65/155 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNTV+     +       D++ +M+  G+ P    ++S++    K   +     F 
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            QM     LP+   YN LI          +A+R+F+EM+++ + P+  T   L+ +    
Sbjct: 281 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 340

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G++     +   M   G   D F Y  ++  +  K
Sbjct: 341 GKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 375



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 62/145 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++    +       +++  ++M +G+      F S+I    K  R+ D     D   
Sbjct: 470 YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTV 529

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD  VYN L+         ++A+R+F+ M    ++PN   Y  L+N     G++D
Sbjct: 530 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 589

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
              ++ R+M   G       Y+ +I
Sbjct: 590 EGLSLFREMLQRGIKPSTILYSIII 614



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 66/141 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +++++ +L    R    ++++D  +  G+ P   +++ L+ G     +++      D M 
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 564

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  P+V  Y  L++   K    D+ + +F EM +  +KP+   Y  +++    AG+  
Sbjct: 565 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTV 624

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
           P      +MT +G  +D   Y
Sbjct: 625 PAKMKFHEMTESGIAMDICTY 645



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 66/164 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +R    +   YN+VV +L   R           M+   V P    +++LI G    
Sbjct: 246 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 305

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + ++      +M+ +  LPDV   + L+    K     +A  +F+ M      P+  +Y
Sbjct: 306 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 365

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +LN  A  G L  +  +   M   G   D + +  LI A+ N
Sbjct: 366 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 409



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+V       R      ++ +M+  G++P+  L+  +I G  +  R        
Sbjct: 571 NVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKF 630

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
            +M  +G   D+  YN ++    K +  D+AI +F+E++   VK N
Sbjct: 631 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKIN 676



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 3/176 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFFRDQM 102
           Y TV+ +L    +     + ++ M+  GV P +  ++ LI G    GS L+      + M
Sbjct: 435 YRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 494

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
             NG   D+  ++ +I+   K      A  IF+      + P+   Y  L++     G++
Sbjct: 495 N-NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 553

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
           +    +   M +AG   +   Y  L+  +  KI R D+  +   E++++    S++
Sbjct: 554 EKALRVFDAMVSAGIEPNVVGYGTLVNGYC-KIGRIDEGLSLFREMLQRGIKPSTI 608


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 153/380 (40%), Gaps = 63/380 (16%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++T L  +      R+V+D+M  +GV  T  ++ ++I    +  +   +    
Sbjct: 135 NEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELL 194

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           + MK     P +  YN +I+ C +   + +  + +F EM+   ++P+  TY  LL ACA 
Sbjct: 195 NGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAH 254

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
            G  D    + R M  +G   D   Y+ L+     K+ R +    K+ EL+ +      +
Sbjct: 255 RGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF-GKLNRLE----KVSELLRE------M 303

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAME 277
           E+ G                NLP               +T Y+V   A AEL  + +AM+
Sbjct: 304 ESGG----------------NLPD--------------ITSYNVLLEAYAELGSIKEAMD 333

Query: 278 TLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV-- 334
              +M       +   Y V+ N+  Y   G  D+   +F +   S   P A  Y  L+  
Sbjct: 334 VFRQMQAAGCVANAATYSVLLNL--YGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQV 391

Query: 335 --EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
             EG   GY  + + L  D    M   N+   P M +   L+ A  K G Y  A  I   
Sbjct: 392 FGEG---GYFKEVVTLFHD----MVEENV--EPNMETYEGLIFACGKGGLYEDAKKILLH 442

Query: 393 MQARKITPSLPA----VEAY 408
           M  + I PS  A    +EA+
Sbjct: 443 MNEKGIVPSSKAYTGVIEAF 462



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 63/151 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN ++        F  +  ++ DM+ + V+P  + +  LI    KG   +D     
Sbjct: 381 DAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKIL 440

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M   G +P    Y  +I   G+    ++A+ +F  M +    P  +TY   ++A A  
Sbjct: 441 LHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARG 500

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G      AI+  M  +G   D   + G+I A
Sbjct: 501 GLYKEAEAILSRMNESGLKRDVHSFNGVIKA 531



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V++ M   G  PT + ++S I    +G   ++      +M  +G   DV  +N +I    
Sbjct: 474 VFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFR 533

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    ++A++ + EM+K   +PN  T   +L+   +AG +D      +++ A+G      
Sbjct: 534 QGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVM 593

Query: 183 CYAGLITAHTNKIPRADDTATKIIELV 209
           CY  L+ A   K  R +D    I E++
Sbjct: 594 CYC-LMLALYAKNDRLNDAYNLIDEMI 619



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 59/151 (39%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ Y+ ++       R+  +RD++ +M +    P    ++ LI    +G   ++     
Sbjct: 346 NAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLF 405

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M      P++  Y  LI  CGK    + A +I   M +  + P+ + Y  ++ A   A
Sbjct: 406 HDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQA 465

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +    +   M   G+      Y   I A
Sbjct: 466 ALYEEALVVFNTMNEVGSNPTVETYNSFIHA 496


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 4/163 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   Y T+V +        +   +   M++ G  P    F +L+ G     R+ D
Sbjct: 263 RGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHD 322

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCL 152
                  M A G+ P    YN LI   G C   D   A  +  +M+++   PN +TY  L
Sbjct: 323 ALDMWKCMVAEGWAPSTVSYNVLIR--GLCSVGDLKGASSVLNDMEQHGCFPNARTYSTL 380

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
           ++  + AG LD   +I  DMT +G   +   Y  ++     K+
Sbjct: 381 IDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKL 423



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 63/151 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y+T++   +          +++DM   G +P   ++ +++    K           
Sbjct: 373 NARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLI 432

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M      P+   +N LI     C+   +A+ +F EM+++   PNG+TY  LL+     
Sbjct: 433 DKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFRE 492

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G       +V +M   G  L    Y  +++ 
Sbjct: 493 GNCGDALQMVIEMQNHGIELSLVTYNTVVSG 523



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 65/159 (40%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N   +NT++ SL + RR      V+ +M   G  P    ++ L+ G  +     D 
Sbjct: 439 NCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDA 498

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                +M+ +G    +  YN ++S   + +   +A+     M    ++P+  T+  +++A
Sbjct: 499 LQMVIEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHA 558

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               G++     I+  M     G +   Y  L+    N+
Sbjct: 559 YCKEGEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQ 597



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L  +     +  V  +M  DGVQP    ++ L+    +  R+       D+M 
Sbjct: 137 YNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMA 196

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD   Y  ++S        D+A  +          P   +Y  ++ A     ++ 
Sbjct: 197 TKGCPPDDVTYGTIVSALCTLGRVDEATEVLS-----AAPPVAASYNAVILALCREFRMQ 251

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
            V+A+V DM   G   +   Y  ++ A
Sbjct: 252 EVFAVVGDMVGRGLQPNVITYTTIVNA 278


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   +   Y TV+  L    +    R V+D+M  +G  P+   +++LI  T K   ++D 
Sbjct: 280 NCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDA 339

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D M   G++P+V  Y  LI         D+A+++ ++MK+   +PN QTY  L+  
Sbjct: 340 VAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGY 399

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK---IIELVEQS 212
               G ++    +   M+     L       +I +      RA+D A     ++E+V+  
Sbjct: 400 LFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVD-- 457

Query: 213 KGWSSVETSGNNAENEMMGVSKEEL 237
           +G+       N   N +M    +EL
Sbjct: 458 RGYLPRRFMFNRVLNGLMLTGNQEL 482



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 11/193 (5%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +  +A  YNT+       +      D+   M+  G+ PT+  ++ ++ G  +  +LQ 
Sbjct: 204 RRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQH 263

Query: 95  TFFFRDQMKANG-----FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + F  QMK  G       PDV  Y  ++   G     D+A ++F+EM +    P+  TY
Sbjct: 264 AWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATY 323

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIE 207
             L+      G ++   A+  DM   G   +   Y  LI    H  KI    D A K+++
Sbjct: 324 NALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKI----DRAMKLLD 379

Query: 208 LVEQSKGWSSVET 220
            +++     +V+T
Sbjct: 380 KMKREGCEPNVQT 392



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 20/286 (6%)

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
           F PD   YN L     + K++ +A+ I  +M +  + P   TY  +L     +GQL   +
Sbjct: 206 FPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAW 265

Query: 167 AIVRDMTAAGAGLDKFCYAGLIT----AHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                M   G+  D+ C   +++     H   +    D A K+ + + +     S+ T  
Sbjct: 266 DFFLQMKKRGSN-DENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATY- 323

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
               N ++ V+ ++  N+  A  V     R G++  ++T   +    C   K  +AM+ L
Sbjct: 324 ----NALIQVTCKK-GNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMK-L 377

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK-FPPAELYATLVEGAM 338
           L+ +K++   P+V      I      GDI+    +FE     E+  P  + Y  ++    
Sbjct: 378 LDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMF 437

Query: 339 FGYTPKGMQLAQDTLVNMNSRNI----FLSPRMGSDLLLVAAGEKS 380
                + M +A   +V M  R      F+  R+ + L+L    E S
Sbjct: 438 VRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELS 483


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y+T+V +L       +  +++ + M +G  P   ++ ++I G  +  RL+D     
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK  GF  D   YN LI+   + K   +A  + +EMK+  ++P+  TY  LL+    A
Sbjct: 377 SSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKA 436

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           G    V  ++  M   G       +  L+  +  K+ + D+ A +I+  +++S
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSVITFGTLVHGYC-KVGKIDE-ALRILRSMDES 487



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++       F  + ++   M+ DG QP+   F +L+ G  K  ++ +       M 
Sbjct: 426 YNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD 485

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +G  P+  +YN LI    K  + D AI +F+EMK+  V  N  T+  LL
Sbjct: 486 ESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALL 535



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 4/160 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E     ++ +A  Y T+++ LT   R      +   M   G +     ++ LI G  +  
Sbjct: 343 EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKK 402

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI--RIFEEMKKYEVKPNGQT 148
           RL + +    +MK  G  PDV  YN L+S  G CK  D A    +  +M     +P+  T
Sbjct: 403 RLHEAYELLQEMKEVGIRPDVCTYNTLLS--GSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +  L++     G++D    I+R M  +G   +   Y  LI
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLI 500



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 5/170 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     ++R     ++  +M   G++P    +++L+ G+ K            +M 
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P V  +  L+    K    D+A+RI   M +  + PN   Y  L++     G +D
Sbjct: 451 DDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVD 510

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
               +  +M       +   +  L+    +K     +   K  EL++Q +
Sbjct: 511 LAIELFDEMKEKSVPANVTTFNALLKGLRDK-----NMPEKAFELMDQMR 555



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           +N+++ +L   R    +  +Y  M     V+P    +  L+ G  K  R+ D     D M
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGM 198

Query: 103 KANGF--LPDVAVYNYLISVCGKCKNSD-QAIRIFEEMKKYEV---KPNGQTYVCLLNAC 156
                   PDV   N ++   G CK+   Q    F E +   V    PN  TY CL++A 
Sbjct: 199 SRQDLDIRPDVVTLNTVVD--GLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAF 256

Query: 157 AAAGQLDPVYAIVRDMTAAG 176
              G +   Y +V  M   G
Sbjct: 257 CRVGNISMAYELVEKMENEG 276



 Score = 38.5 bits (88), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 143/421 (33%), Gaps = 97/421 (23%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM---LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           Y  +V  L    R      V D M    LD ++P     ++++ G  K  R+Q+   F +
Sbjct: 175 YGILVNGLCKAGRVGDALRVLDGMSRQDLD-IRPDVVTLNTVVDGLCKSGRVQEALAFVE 233

Query: 101 Q--MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           Q     +G  P+   YN LI    +  N   A  + E+M+   V  N  T   ++     
Sbjct: 234 QRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCR 293

Query: 159 AGQLDPVYAIVRD---MTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQ-- 211
           AG+        R+   +   G G +   Y+ L+ A  HTN +  A       +EL  +  
Sbjct: 294 AGRTGAALEFFREKRTVWPEGKG-NAVTYSTLVGALLHTNNVGMA-------MELFHEKM 345

Query: 212 SKGWS----------SVETSGNNAEN--EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
           S+G S          S  T     E+   M    KE  + L T  Y     GF  +    
Sbjct: 346 SEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRK--KR 403

Query: 260 YHVAFHACAELKDV----------------------QAMETLLEMLKKDRKSPDVYIVMQ 297
            H A+    E+K+V                       A++ LL  +  D   P V     
Sbjct: 404 LHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGT 463

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357
            +  Y   G ID   ++      S   P   +Y TL++                      
Sbjct: 464 LVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLID---------------------- 501

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREV 417
               FL  R   DL              A  ++D M+ + +  ++    A   GL+D+ +
Sbjct: 502 ----FLCKRGDVDL--------------AIELFDEMKEKSVPANVTTFNALLKGLRDKNM 543

Query: 418 P 418
           P
Sbjct: 544 P 544


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L    RF +   V   MM  G +P      SLI G  +G+R+ D      +M+
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 166

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV +YN +I   G CK    + A+ +F+ M++  V+ +  TY  L+     +G+
Sbjct: 167 EMGFRPDVVIYNTIID--GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224

Query: 162 LDPVYAIVRDMT 173
                 ++RDM 
Sbjct: 225 WSDAARLMRDMV 236



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 107/275 (38%), Gaps = 9/275 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++D M  DGV+     ++SL+ G     R  D       M     +P+V  +  +I V 
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 254

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     +A++++EEM +  V P+  TY  L+N     G++D    ++  M   G   D 
Sbjct: 255 VKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDV 314

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             Y  LI     K  R D+  TK+   + Q +G      + N          + +     
Sbjct: 315 VTYNTLINGFC-KSKRVDE-GTKLFREMAQ-RGLVGDTITYNTIIQGYFQAGRPD----- 366

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
            A+ +  R      + T   + +  C   +  +A+  L E ++K     D+      I  
Sbjct: 367 AAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKAL-VLFENMQKSEIELDITTYNIVIHG 425

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
               G++++   +F    C    P    Y T++ G
Sbjct: 426 MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 460



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R+   N   +  V+     + +F     +Y++M    V P    ++SLI G     R+ +
Sbjct: 238 RDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDE 297

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                D M   G LPDV  YN LI+   K K  D+  ++F EM +  +  +  TY  ++ 
Sbjct: 298 AKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 357

Query: 155 ACAAAGQLDPVYAIVRDMTA 174
               AG+ D    I   M +
Sbjct: 358 GYFQAGRPDAAQEIFSRMDS 377



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 2/171 (1%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RF +  +   +  +  Y  +    ++++       R F   D+   M   G +P   +++
Sbjct: 119 RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 178

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKK 139
           ++I G+ K   + D     D+M+ +G   D   YN L++ +C   + SD A R+  +M  
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA-RLMRDMVM 237

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            ++ PN  T+  +++     G+      +  +MT      D F Y  LI  
Sbjct: 238 RDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 34/198 (17%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  RR    +   YN+++  L    R    + + D M+  G  P    +++LI G  K 
Sbjct: 268 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 327

Query: 90  SRLQD-TFFFRDQMKANGFLPDVAVYN------------------------------YLI 118
            R+ + T  FR +M   G + D   YN                              Y I
Sbjct: 328 KRVDEGTKLFR-EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSI 386

Query: 119 SVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            + G C N   ++A+ +FE M+K E++ +  TY  +++     G ++  + + R ++  G
Sbjct: 387 LLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKG 446

Query: 177 AGLDKFCYAGLITAHTNK 194
              D   Y  +I+    K
Sbjct: 447 LKPDVVSYTTMISGFCRK 464



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN++V  L    R+     +  DM++  + P    F ++I   +K  +  +     
Sbjct: 208 DAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLY 267

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++M      PDV  YN LI+  G C +   D+A ++ + M      P+  TY  L+N   
Sbjct: 268 EEMTRRCVDPDVFTYNSLIN--GLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFC 325

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            + ++D    + R+M   G   D   Y  +I  +
Sbjct: 326 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN++V  L  Q        V ++M  +G  P    ++ +I G  K   + D     +   
Sbjct: 366 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 425

Query: 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G+LPDV  +N LI   G CK    D A+++ E M +Y + P+  TY  +LN    AG+
Sbjct: 426 MKGYLPDVFTFNTLID--GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGK 483

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKI 205
           ++ V    ++M   G   +   Y  LI     +NK+  A     K+
Sbjct: 484 VNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKM 529



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 61/158 (38%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A      +   YN V+  L           V +D ++ G  P    F++LI G  K  
Sbjct: 388 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 447

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L       ++M   G  PD   YN +++   K    ++    F+EM      PN  TY 
Sbjct: 448 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 507

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+     + +++    ++  M+  G   D   +  LI
Sbjct: 508 ILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLI 545



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 7/176 (3%)

Query: 17  ALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           AL +R  V  AG    +  +R  + N   YN  +  L    R      + D M    V P
Sbjct: 198 ALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-P 256

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIR 132
               +++LI G  K S  Q+   +  +M   G LPD   YN +I   G CK S   +A  
Sbjct: 257 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIID--GYCKISMVQEATE 314

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           + ++       P+  TY  L+N   A G ++    +  +  A G   D   Y  L+
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLV 370



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 54/137 (39%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++ +     +      V   M  +G+ P    F++LI G  +   L+  +   
Sbjct: 502 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 561

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +++  G+      +N LI       N   A +IF+EM     + +  TY  L++     
Sbjct: 562 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 621

Query: 160 GQLDPVYAIVRDMTAAG 176
             +D  Y  + +M   G
Sbjct: 622 ANVDRAYMHLVEMIKKG 638



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/115 (20%), Positives = 52/115 (45%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++   + Y+  A  +NT++ + + +    +   ++D+M+  G +     +  LI G+ K 
Sbjct: 562 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 621

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           + +   +    +M   GF+P ++ +  +I+         QA+ I   M K  V P
Sbjct: 622 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 44  YNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YNT++  L      Q     LR     MM  G  P    ++++I G  K S +Q+     
Sbjct: 261 YNTLIRGLCKKSMPQEAMHYLRR----MMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 316

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
                 GF+PD   Y  LI+  G C   D  +A+ +F E +   +KP+   Y  L+    
Sbjct: 317 KDAVFKGFVPDQVTYCSLIN--GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 374

Query: 158 AAGQLDPVYAIVRDMTAAGAGLD 180
             G +     ++ +M   G   D
Sbjct: 375 LQGLILHALQVMNEMAEEGCHPD 397



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 120/304 (39%), Gaps = 23/304 (7%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  Y TVV  L +       R ++D M+   V P    F+ ++    K   + +      
Sbjct: 154 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG 213

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           ++   G   ++  YN  I    +     +A+R+ + M+ Y V P+  TY  L+       
Sbjct: 214 KVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKS 272

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE------LVEQSKG 214
                   +R M   G   D F Y  +I  +  KI    + AT++++       V     
Sbjct: 273 MPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYC-KISMVQE-ATELLKDAVFKGFVPDQVT 330

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
           + S+  +G  AE ++      EL+N   A+      G    ++    +    C +   + 
Sbjct: 331 YCSL-INGLCAEGDVE--RALELFNEAQAK------GIKPDIVVYNSLVKGLCLQGLILH 381

Query: 275 AMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           A++ + EM  ++   PD+  Y ++ N  C +  G+I +   V  D I     P    + T
Sbjct: 382 ALQVMNEM-AEEGCHPDIQTYNIVINGLCKM--GNISDATVVMNDAIMKGYLPDVFTFNT 438

Query: 333 LVEG 336
           L++G
Sbjct: 439 LIDG 442


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 130/297 (43%), Gaps = 24/297 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++     +    L + V+D +   G++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L + F  +  M+A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PN  
Sbjct: 185 GDLDEGFRLKSVMQASGVHPDVYTYSVLIN--GLCKESKMDDANELFDEMLBNGLVPNXV 242

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI 205
           T+  L++     G++D    I R M +     D   Y  LI     K  + +A D   ++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAF 264
                  KG    + +     +   G  KE   +L TA EY  R      R   V + A 
Sbjct: 303 -----SMKGLKPDKITYTTLID---GXCKEG--DLETAFEYRKRMIKENIRXDDVAYTAL 352

Query: 265 HA--CAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFED 317
            +  C E + V A + L EML    K P++  Y ++ N  C    GD+  G K+ ++
Sbjct: 353 ISGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEXC--KKGDVWTGSKLLKE 406



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M + G++P +  + +LI G  K   L+  F +R +M 
Sbjct: 279 YNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMI 338

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D   Y  LIS +C + ++ D A ++  EM    +KP   TY  ++N     G +
Sbjct: 339 KENIRXDDVAYTALISGLCQEGRSVD-AEKMLREMLSVGLKPEIGTYTMIINEXCKKGDV 397

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 398 WTGSKLLKEMQRXG 411


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 116/297 (39%), Gaps = 35/297 (11%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   + + ++   YNT+V  L+ Q        +  DMM  G  P    ++ ++ G  K  
Sbjct: 381 EAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMG 440

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L D     +   A G +PD+  +N LI    K +N D+AI I + M  + + P+  TY 
Sbjct: 441 CLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYN 500

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            LLN    A +LD V    + M   G   +   Y  LI +        D   ++ +EL +
Sbjct: 501 TLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCK-----DRKVSEAMELFK 555

Query: 211 QSKG-------------WSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
           + K                 + ++G  + A    + + KE  ++  TA            
Sbjct: 556 EMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTA------------ 603

Query: 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGH 312
              ++++  +A     +V   E L   +     +PD Y     I  Y  +G+ID  H
Sbjct: 604 ---IFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAH 657



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  ++    +   +N ++  L  +        ++  +M  GV P    F+  I G  + 
Sbjct: 205 DEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             + +     + + + G  PDV  YN LI  CG CK+S   +A     +M    V+PN  
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLI--CGFCKHSKLVEAECYLHKMVNSGVEPNEF 322

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           TY  ++N    AG +     I+RD    G   D+F Y+ LI    N
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 119/310 (38%), Gaps = 47/310 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT-FFFRDQM 102
           YNT++       +          M+  GV+P    ++++I G  K   +Q+     RD M
Sbjct: 289 YNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAM 348

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSD---------------------------------- 128
              GF+PD   Y+ LI+  G C + D                                  
Sbjct: 349 -FKGFIPDEFTYSSLIN--GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQG 405

Query: 129 ---QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              QA+++ ++M ++   P+  TY  ++N     G L     I+ D  A G   D F + 
Sbjct: 406 LVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFN 465

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245
            LI  +  +  R  D A +I++ +  S G +    + N   N +    K  L N+     
Sbjct: 466 TLIDGYCKQ--RNMDKAIEILDTM-LSHGITPDVITYNTLLNGLCKARK--LDNVVDTFK 520

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
                G    ++T   +    C + K  +AME   EM K    +PD+  +   I     +
Sbjct: 521 AMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEM-KTRGLTPDIVTLCTLICGLCSN 579

Query: 306 GDIDNGHKVF 315
           G++D  +++F
Sbjct: 580 GELDKAYELF 589



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 9/183 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L   R+   + D +  M+  G  P    ++ LI    K  ++ +      +MK
Sbjct: 499 YNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK 558

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAG 160
             G  PD+     LI  CG C N   D+A  +F  + K+Y+   +   +  ++NA     
Sbjct: 559 TRGLTPDIVTLCTLI--CGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKL 616

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW-SSVE 219
            +     +   M  +    D + Y  +I ++  K    D   T ++E +  SKG   S  
Sbjct: 617 NVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYC-KTGNIDLAHTFLLENI--SKGLVPSFT 673

Query: 220 TSG 222
           T G
Sbjct: 674 TCG 676



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + ++I G  K +   + +   D+M   G  PD+  +N LI V  K  N  ++ ++F ++ 
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           K  V PN  T+   +      G +D    ++  + + G   D   Y  LI  
Sbjct: 244 KRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICG 295


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           +R   A +A  YN ++  L   +       ++ +M   G+ P    ++SLI G  K  R+
Sbjct: 331 SRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRI 390

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
              +   D+M  NG   D+  YN LI V  K  + D+AI + +++K   ++P+  TY  L
Sbjct: 391 SYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNIL 450

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++     G+L     + +D+   G  ++ + Y  +I  
Sbjct: 451 IDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMING 488



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 112/293 (38%), Gaps = 6/293 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ SL   +       +Y +M+   + P    F+SLI+G     +L++ F    +M 
Sbjct: 202 YNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMV 261

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PDV  ++ L+    K  N  +A  +   M K  V P+  TY  L++      +++
Sbjct: 262 LKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVN 321

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               +   M+  G       Y  +I     KI   D+  +   E+    KG +    + N
Sbjct: 322 KAKHVFSTMSRLGVAPHAHSYNIMING-LGKIKMVDEALSLFKEMC--CKGIAPDTVTYN 378

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
           +  + +  + +   Y     + +H   G  + +LT Y+       +   +     L++ +
Sbjct: 379 SLIDGLCKLGRIS-YAWQLVDEMH-NNGIPADILT-YNSLIDVLCKNHHIDKAIALVKKI 435

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           K     P +Y     I      G + N   VF+D +       A  Y  ++ G
Sbjct: 436 KDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMING 488



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 35/163 (21%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL-------------- 108
           ++  ++  G  PT   F++LI G     +L++   F D + A GF               
Sbjct: 116 IFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLC 175

Query: 109 ---------------------PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                                 DV +YN +I+   K K    A +++ EM    + P+  
Sbjct: 176 KIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVV 235

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           T+  L+      GQL   + +  +M       D + ++ L+ A
Sbjct: 236 TFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDA 278



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 8/165 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +  A +   YN+++  L    R      + D+M  +G+      ++SLI    K 
Sbjct: 363 KEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKN 422

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEM--KKYEVKPN 145
             +        ++K  G  P +  YN LI   G CK      A  +F+++  K Y V  N
Sbjct: 423 HHIDKAIALVKKIKDQGIQPSMYTYNILID--GLCKGGRLKNAQDVFQDLLIKGYSV--N 478

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             TY  ++N     G  +    ++  M   G   D   Y  +I A
Sbjct: 479 AWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRA 523



 Score = 38.5 bits (88), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    R    +DV+ D+++ G       ++ +I G  K     +      +M+
Sbjct: 447 YNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKME 506

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
            NG +PD   Y  +I    +   +++A ++  EM
Sbjct: 507 NNGIIPDAVTYETIIRALFRKDENEKAEKLLREM 540


>gi|341605727|gb|AEK82966.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605729|gb|AEK82967.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  BEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|399107208|gb|AFP20368.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGXVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 190


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R +  +   YN ++ SL ++R+  L   V D ++LD   PT   +  LI  T+    + +
Sbjct: 176 RGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINE 235

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCL 152
                ++M A G LPD+  YN +I   G CK    ++A  +   +     +P+  +Y  L
Sbjct: 236 AMKLLEEMLARGLLPDMYTYNAIIR--GMCKEGMVERAAELITSLTSKGCEPDVISYNIL 293

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           L A    G+ D    +V +M + G   +K  Y+ LI++   +  R D+  + +  ++E+
Sbjct: 294 LRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLC-RFGRIDEAISVLKVMIEK 351



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 1/162 (0%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           AE ++R    N  + Y+ +++SL    R      V   M+   + P    +  LI    K
Sbjct: 311 AEMFSRGCEPNKVT-YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 369

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             RL       D M +NG LPD+  YN +++   K  N++QA+ IF +++     PN  +
Sbjct: 370 EGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSS 429

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           Y  +++A  + G       +V  M + G   D+  Y  LI+ 
Sbjct: 430 YNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISC 471



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S YNT++++L S         +   M+  G+ P    ++SLI    +   +++     
Sbjct: 426 NVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLL 485

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M+ +GF P V  YN ++    K +  D AI +F EM +   +PN  TY+ L+     A
Sbjct: 486 DDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFA 545

Query: 160 G 160
           G
Sbjct: 546 G 546



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 3/178 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++++L  + R  L   + D M+ +G  P    +++++    K           ++++
Sbjct: 360 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLR 419

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V+ YN +IS    C +  +A+ +   M    + P+  TY  L++     G ++
Sbjct: 420 GMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVE 479

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               ++ DM  +G       Y  ++     K+ R DD      E++E  KG    ET+
Sbjct: 480 EAIGLLDDMEQSGFRPTVISY-NIVLLGLCKVRRIDDAIGMFAEMIE--KGCRPNETT 534



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAI 131
           +P    ++++I G  K ++++      ++MKA GFLPD+  YN +I S+C + +    A+
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNR-RKLGLAL 202

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + +++      P   TY  L+ A    G ++    ++ +M A G   D + Y  +I
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAII 259



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 67/161 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    +   YN ++  +  +       ++   +   G +P    ++ L+   +  
Sbjct: 241 EEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQ 300

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +  +      +M + G  P+   Y+ LIS   +    D+AI + + M + E+ P+  +Y
Sbjct: 301 GKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSY 360

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L++A    G+LD    I+  M + G   D   Y  ++ A
Sbjct: 361 DPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAA 401



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 59/151 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V++      +      V + M   G  P    ++ +I       +L       DQ+ 
Sbjct: 150 YNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLL 209

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +  +P V  Y  LI         ++A+++ EEM    + P+  TY  ++      G ++
Sbjct: 210 LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVE 269

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               ++  +T+ G   D   Y  L+ A  N+
Sbjct: 270 RAAELITSLTSKGCEPDVISYNILLRAFLNQ 300


>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Cucumis sativus]
          Length = 580

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R V+ +M   GV  T   ++SL+        +   +   DQM+  G  PDV  Y  LIS 
Sbjct: 266 RKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKIY---DQMQRAGLQPDVVSYALLISA 322

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            GK +  ++A+ +FEEM    ++P  + Y  LL+A A +G ++    + + M       D
Sbjct: 323 YGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPD 382

Query: 181 KFCYAGLITAHTN 193
              Y  +++A+ N
Sbjct: 383 ICSYTTMLSAYVN 395



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 120/306 (39%), Gaps = 47/306 (15%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ YA N   +  ++ +    RR+     ++  M   G +P+   +  ++   ++GS+ +
Sbjct: 166 KKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGSKFK 225

Query: 94  DTFFFRDQM--KANGFL-PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +     D +  K    L PD  +++ +I +  K  N ++A ++F EM    V     TY 
Sbjct: 226 EAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYN 285

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++      ++  +Y     M  AG   D   YA LI+A+     R ++ A  + E   
Sbjct: 286 SLMSFETNYKEVSKIYD---QMQRAGLQPDVVSYALLISAYGK--ARREEEALAVFE--- 337

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
                            EM+          PT    H+           Y++   A A  
Sbjct: 338 -----------------EMLDAGIR-----PT----HK----------AYNILLDAFAIS 361

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             V+  + + + +K+DR SPD+      +  Y+++ D++     F         P    Y
Sbjct: 362 GMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTY 421

Query: 331 ATLVEG 336
            TL++G
Sbjct: 422 GTLIKG 427



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           DG +P    + +LI G  K + L+      ++MK NG   +  +   ++   GK K+   
Sbjct: 412 DGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGS 471

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           A+  F E++   ++P+ +    LL+    A +LD    +V
Sbjct: 472 AVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQLV 511



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFFRDQM 102
           Y  ++++    RR      V+++M+  G++PT   ++ L+    + G   Q    F+  M
Sbjct: 316 YALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKS-M 374

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K +   PD+  Y  ++S      + + A   F  +K+   +PN  TY  L+   A    L
Sbjct: 375 KRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNL 434

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           + +     +M   G  +++     ++ A+
Sbjct: 435 EKMIKRYEEMKVNGIRVNQTILTTIMDAY 463


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           DM   G+ P    +++LI     GS  ++     +++K  GF PD   YN L+ V GK +
Sbjct: 240 DMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSR 299

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+ + ++M+    +P+  TY  L++A    G L+    + R M   G   D + Y 
Sbjct: 300 RPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYT 359

Query: 186 GLITAHTN 193
            L++   N
Sbjct: 360 TLLSGFVN 367



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 69/159 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     +  +A  YN ++      RR     +V   M  +  +P+   ++SL+   ++G
Sbjct: 274 EEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRG 333

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+D    + +M   G  PDV  Y  L+S        + A+ +FEEM+K   KPN  T+
Sbjct: 334 GLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTF 393

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L+      G+ + +  + +++       D   +  L+
Sbjct: 394 NALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLL 432



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 10/191 (5%)

Query: 25  TSAGAEEYARRNYAN--------NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
            +AG EE A   +          N   +N ++     + +F  +  V+ ++ +    P  
Sbjct: 366 VNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDI 425

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             +++L+    +     +     ++MK + F P+   +N LIS  G+C + DQA+  ++ 
Sbjct: 426 VTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKR 485

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--K 194
           M +  V P+  TY  +L   A  G  +    ++ +M   G   ++  Y+ L+ A+ N  +
Sbjct: 486 MLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGRE 545

Query: 195 IPRADDTATKI 205
           + R +  A +I
Sbjct: 546 VERMNALAEEI 556



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 82/182 (45%)

Query: 13  SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
           +V G +G  +    A  ++      A +   YNT+++   +   +    D+++++ + G 
Sbjct: 222 NVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGF 281

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P    +++L+    K  R ++      QM++N F P V  YN L+S   +    + A+ 
Sbjct: 282 RPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALV 341

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +  +M    +KP+  TY  LL+    AG+ +    +  +M   G   +   +  LI  + 
Sbjct: 342 LKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYG 401

Query: 193 NK 194
           ++
Sbjct: 402 DR 403



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 142/385 (36%), Gaps = 44/385 (11%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S    +V+ L    R      +  ++  DG +     + SLI       + +D     
Sbjct: 143 NGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVF 202

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            +MK  G  P +  YN +++V GK      + I + ++MK + + P+  TY  L++ C A
Sbjct: 203 GKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRA 262

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
               +    +  ++  AG   D   Y  L+  +     R    A ++++ +E +    SV
Sbjct: 263 GSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKS--RRPKEAMEVLKQMESNSFRPSV 320

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV---------------YHVA 263
            T                 YN   + YV  RGG L   L +               Y   
Sbjct: 321 VT-----------------YNSLVSAYV--RGGLLEDALVLKRKMVDKGIKPDVYTYTTL 361

Query: 264 FHACAEL-KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322
                   K+  AME   EM K   K P++      I+ Y   G  +   KVF++    +
Sbjct: 362 LSGFVNAGKEELAMEVFEEMRKVGCK-PNICTFNALIKMYGDRGKFEEMVKVFKEIKVCK 420

Query: 323 KFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGG 382
             P    + TL+  A+FG    GM      +     R+ F   R   + L+ A G + G 
Sbjct: 421 CSPDIVTWNTLL--AVFG--QNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYG-RCGS 475

Query: 383 YTTANYIWDLMQARKITPSLPAVEA 407
           +  A   +  M    ++P L    A
Sbjct: 476 FDQAMAAYKRMLEAGVSPDLSTYNA 500



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + YN+++   +    F     ++ +++  G++P    ++ +I    +   + +     ++
Sbjct: 636 TSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEE 695

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN------- 154
           MK    +PDV  YN  I+         +AI +   M K   KPN  TY  +++       
Sbjct: 696 MKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKL 755

Query: 155 ---ACAAA---GQLDP 164
              AC+     G LDP
Sbjct: 756 RDEACSFVQNLGDLDP 771


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ A R    +A+ YN +++ L  +R     +++ ++M+   VQP + ++ +LI G ++ 
Sbjct: 315 EKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRS 374

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            +L D     + M+     PD+  YN +I   G CK     +A+     M+K    P+  
Sbjct: 375 DKLSDARKIFEFMEEKA-CPDIVAYNVMIK--GYCKFGMMKEAVTCMSSMRKAGCIPDEF 431

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           TY  L++  A  G +     ++ DM       + F YA LI  + N
Sbjct: 432 TYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCN 477



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 109/309 (35%), Gaps = 43/309 (13%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR    N   Y  ++     +    +  D+  +MM  G  P      +LI G +   
Sbjct: 246 EAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSG 305

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++ D    R++M     +PD  +YN LIS   K +    A  + EEM + +V+P      
Sbjct: 306 QVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQP------ 359

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
                                        DKF Y  LI         +D  A KI E +E
Sbjct: 360 -----------------------------DKFIYTTLIDGFVRSDKLSD--ARKIFEFME 388

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
           +      V  +         G+ KE +    T     R+ G +    T Y       A+ 
Sbjct: 389 EKACPDIVAYNVMIKGYCKFGMMKEAV----TCMSSMRKAGCIPDEFT-YTTLVDGYAKK 443

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
            D+ A   LL  + K R  P+++     I  Y + GD  +   +F        FP    Y
Sbjct: 444 GDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHY 503

Query: 331 ATLVEGAMF 339
             L+ G++F
Sbjct: 504 TVLI-GSLF 511



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/346 (19%), Positives = 137/346 (39%), Gaps = 30/346 (8%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M   G+ PT   + ++I    +   L        +M+A G  P+V +YN +I+   KC+
Sbjct: 141 EMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCR 200

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
           ++ QA  +  +M K    P+  T+  ++      G +     ++R+    G   ++  Y 
Sbjct: 201 SASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYT 260

Query: 186 GLITAHT--NKIPRADDTATKII------ELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
            LI       +   A D   +++      +++        +  SG   +  ++     E 
Sbjct: 261 PLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAER 320

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
             +P A               +Y+V      + + + A + LLE + + +  PD +I   
Sbjct: 321 QVMPDA--------------NIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTT 366

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357
            I  ++ S  + +  K+FE ++  +  P    Y  +++    GY   GM   ++ +  M+
Sbjct: 367 LIDGFVRSDKLSDARKIFE-FMEEKACPDIVAYNVMIK----GYCKFGMM--KEAVTCMS 419

Query: 358 S-RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
           S R     P   +   LV    K G  + +  +   M  R+  P++
Sbjct: 420 SMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNI 465


>gi|399107204|gb|AFP20366.1| At1g03560-like protein, partial [Capsella grandiflora]
 gi|399107210|gb|AFP20369.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 190


>gi|242038361|ref|XP_002466575.1| hypothetical protein SORBIDRAFT_01g010260 [Sorghum bicolor]
 gi|241920429|gb|EER93573.1| hypothetical protein SORBIDRAFT_01g010260 [Sorghum bicolor]
          Length = 771

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDM--MLDGVQPTRDLFHSLIVGTM 87
           EE +RR   +N   YN  + +    R+  +   ++  M      V P    ++S+I   +
Sbjct: 214 EELSRRGLPSNVRLYNICIHAFGKWRQLGMSLRLFAAMKAATPPVSPDICTYNSVIRALV 273

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNG 146
            G+R+ D     D+MK++G  PDV  Y  +++ C K    D A+R+F+EM+    VK + 
Sbjct: 274 VGARVPDALVIFDEMKSSGIEPDVFTYRAVMNGCCKSFRMDDALRVFQEMRGSSGVKSDV 333

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
             Y  LL+    A +LD        M A G
Sbjct: 334 VVYNSLLDGLFKAKKLDEACGFFETMVADG 363



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 3/169 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YN+V+ +L    R      ++D+M   G++P    + +++ G  K  R+ D    F++  
Sbjct: 265 YNSVIRALVVGARVPDALVIFDEMKSSGIEPDVFTYRAVMNGCCKSFRMDDALRVFQEMR 324

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            ++G   DV VYN L+    K K  D+A   FE M    ++ +  T+  L++     G+ 
Sbjct: 325 GSSGVKSDVVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSASTHNTLIDGLFKNGRA 384

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           +    +  ++   G  LD   Y+ ++     +     D   + +ELV++
Sbjct: 385 EAACRLFYELRRKGQLLDGIAYSIMVREFCKE--GMGDQVAEAVELVKE 431



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 36  NYANNASEY--NTVVTSLTSQRRFFLLRDVYDDMMLDGVQ--PTRDLFHSLIV---GTMK 88
           N  N  + Y  N+++TS   +     L+ V+  +   G Q  P     ++LI+   G M 
Sbjct: 603 NLGNKGTSYTYNSLMTSFVKKG---YLKQVWAILHERGGQLCPNDVATYNLIIQGLGQMG 659

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            + +  T    D++   G   D+ +YN LI+  GK    ++A  +FE++ +  +KP+  T
Sbjct: 660 KAEVASTII--DRLSKKGVYMDIVMYNTLINQLGKVGKVEEAGCLFEQIIRSGMKPDVVT 717

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +  L+N  A AG+L      +R M   G
Sbjct: 718 FNTLININAKAGRLKEADKYLRRMITEG 745



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY- 140
           L++   K +   D  +  +++   G   +V +YN  I   GK +    ++R+F  MK   
Sbjct: 196 LLLALSKENLCDDFRYVFEELSRRGLPSNVRLYNICIHAFGKWRQLGMSLRLFAAMKAAT 255

Query: 141 -EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
             V P+  TY  ++ A     ++     I  +M ++G   D F Y  ++        R D
Sbjct: 256 PPVSPDICTYNSVIRALVVGARVPDALVIFDEMKSSGIEPDVFTYRAVMNGCCKSF-RMD 314

Query: 200 DTATKIIELVEQSKGWSSVET 220
           D     + + ++ +G S V++
Sbjct: 315 DA----LRVFQEMRGSSGVKS 331



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 25/115 (21%), Positives = 51/115 (44%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N+ + YN ++  L    +  +   + D +   GV     ++++LI    K  ++++    
Sbjct: 643 NDVATYNLIIQGLGQMGKAEVASTIIDRLSKKGVYMDIVMYNTLINQLGKVGKVEEAGCL 702

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +Q+  +G  PDV  +N LI++  K     +A +    M    + PN  T   L+
Sbjct: 703 FEQIIRSGMKPDVVTFNTLININAKAGRLKEADKYLRRMITEGIAPNYATETILI 757


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +N ++    + +   +   V+ +M   GV+P    ++SLI G     ++ +    R
Sbjct: 214 NEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLR 273

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           DQM  +   P++  +N L++  G CKN    QA  +FE+M K  + PN  TY  L++A  
Sbjct: 274 DQMVNSCLEPNIITHNALLN--GFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYC 331

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               ++  +A+ R M   G   D   Y  LI     K
Sbjct: 332 KDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRK 368



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 65/164 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+    N   YN+++  L +  +      + D M+   ++P     ++L+ G  K  
Sbjct: 240 EMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNK 299

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            ++      + M      P+V  YN LI    K +N + A  ++  M    V P+  TY 
Sbjct: 300 MVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYN 359

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           CL+      G L+     V +M       D   Y  L+ +  NK
Sbjct: 360 CLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNK 403



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +MKA+G  P+   +N LI      KN   A+++F EM +  VKPN  TY  L+N     G
Sbjct: 205 EMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNG 264

Query: 161 QLD 163
           +++
Sbjct: 265 KVN 267



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 11  HKSVGGALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM 68
           H ++     +   V  AG   E+  ++    N + YN ++ +            +Y  M+
Sbjct: 288 HNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIML 347

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNS 127
             GV P    ++ LIVG  +   L+       +M       D+  YN L+ S+C K    
Sbjct: 348 GKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNK-GEM 406

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            + +R+ +EM K  +KP+  TY  +++  +  G L
Sbjct: 407 KKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNL 441


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  R++   +   Y TV+    S        ++ D M+  G++P     ++LI G  + 
Sbjct: 561 DDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRS 620

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   + +  +M +NG +PD   YN LI    K  N ++A  +  EM+K  ++ N  TY
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITY 680

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             +LN   A G++     ++R M   G   D   Y+ LI  H ++
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    ++   +DV  +M+  G+ P    +++L+V   +   + +     D+M 
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMS 389

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD+  ++ LI V  +  +  QA+  F EM++  + P+   Y  L++     G L 
Sbjct: 390 RRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALS 449

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
               +  +M A G  +D   Y   +     K   AD
Sbjct: 450 DALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 44/208 (21%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +RR    +   +++++  L      +     + +M   G+ P   ++  LI G  + 
Sbjct: 386 DEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYN-YLISVC--------------------------- 121
             L D    RD+M A G   DV  YN +L  +C                           
Sbjct: 446 GALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTF 505

Query: 122 -----GKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA------- 167
                G CK  N D+A+ +FE M +  +KP+  TY  L++    AG++            
Sbjct: 506 TTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIR 565

Query: 168 --IVRDMTAAGAGLDKFCYAGLITAHTN 193
             I+ D  + G  L+ FC +GL+    N
Sbjct: 566 KDIIPDHISYGTVLNGFCSSGLLPEALN 593



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 38/315 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           NA+ YNT++  +  +      ++++D+M   GV P    F SLI V    G   Q    F
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           R +M+ +G +PD  +Y  LI   G C+N     A+++ +EM       +  TY   LN  
Sbjct: 421 R-EMERSGIVPDNVIYTILID--GFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGL 477

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ----- 211
                      +  +M   G   D + +  LI  +       D    K + L E      
Sbjct: 478 CKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCK-----DGNMDKALNLFEAMVRTN 532

Query: 212 ---SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-- 266
               K   +    G     E MG +KE   ++   + +              H+++    
Sbjct: 533 LKPDKVTYNTLIDGFCKAGE-MGRAKELWDDMIRKDIIPD------------HISYGTVL 579

Query: 267 ---CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
              C+     +A+    +ML+K  + P++      I+ Y  SGD+   ++     I +  
Sbjct: 580 NGFCSSGLLPEALNLCDQMLEKGIR-PNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 324 FPPAELYATLVEGAM 338
            P +  Y TL++G +
Sbjct: 639 IPDSFSYNTLIDGYL 653



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 115/318 (36%), Gaps = 30/318 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R     N    N +V +L   R+F  +     DM   GV      +++LI    +  
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +++ F   +   + G  P +  YN ++    K    D+A  +  EM +  + PN  TY 
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA------------HTNKIPRA 198
            LL        +     I  +M+  G   D   ++ LI              H  ++ R+
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426

Query: 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
                 +I  +    G+       N A ++ + +  E L           RG F+   + 
Sbjct: 427 GIVPDNVIYTI-LIDGFCR-----NGALSDALKMRDEML----------ARGCFMD--VV 468

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
            Y+   +   + K     + L   + +    PD Y     IR Y   G++D    +FE  
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 319 ICSEKFPPAELYATLVEG 336
           + +   P    Y TL++G
Sbjct: 529 VRTNLKPDKVTYNTLIDG 546



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 2/179 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   YNT +  L  ++ F     ++++M+  G+ P    F +LI G  K 
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       + M      PD   YN LI    K     +A  ++++M + ++ P+  +Y
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKII 206
             +LN   ++G L     +   M   G   +      LI  +  +  +P+A +  +K+I
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMI 634



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC--GK 123
           M+ +G+ P    +++LI G +K + L+  F   ++M+  G   ++  YN +++  C  GK
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            + ++Q +R   +M +  + P+G TY  L+N   +   +   +    +M   G
Sbjct: 693 MQEAEQVLR---KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742


>gi|341605713|gb|AEK82959.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605715|gb|AEK82960.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605717|gb|AEK82961.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605719|gb|AEK82962.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605755|gb|AEK82980.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605757|gb|AEK82981.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605759|gb|AEK82982.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605827|gb|AEK83016.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605829|gb|AEK83017.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +  + N   YN+++ +L   +      +V   M+  GV P    ++S++ G     
Sbjct: 37  EMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSG 96

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++   F  +M+++G  PDV  YN L+    K     +A +IF+ M K  +KP+  TY 
Sbjct: 97  QPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYG 156

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            LL   A  G L  ++ ++  M   G   + + ++ L+ A+  +
Sbjct: 157 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 200



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    R    R ++D M   G++P    + +L+ G      L +     D M 
Sbjct: 120 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMV 179

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+  V++ L+    K +  ++A+ +F +M++  + PN  TY  +++    +G+++
Sbjct: 180 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 239

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
                   M   G   D   Y  LI
Sbjct: 240 DAMLYFEQMIDEGLRPDSIVYNSLI 264



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 58/151 (38%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+TV+     +         Y++M+   + P    ++S+I    K   +         M 
Sbjct: 15  YSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 74

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G +PD   YN ++          +AI   ++M+   V+P+  TY  L++     G+  
Sbjct: 75  KSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCT 134

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
               I   MT  G   D   Y  L+  +  K
Sbjct: 135 EARKIFDSMTKRGLKPDITTYGTLLQGYATK 165


>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
          Length = 462

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 59/128 (46%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           RDV+D M + G  P    +  ++ G      L D     D M  +G  PD+  +N LI  
Sbjct: 14  RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 73

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
              C   D+A+ IF EM+ + VKP+  TY+ ++ A    G++D        M   G   D
Sbjct: 74  YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD 133

Query: 181 KFCYAGLI 188
           K+ Y  LI
Sbjct: 134 KYAYHCLI 141



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++    +       +++  ++M +G++     F S+I    K  R+ D     D   
Sbjct: 137 YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTV 196

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE-------------EMKKYEVKPNGQTYV 150
             G  PD  VYN L+         ++A+R+F+             EM +  +KP+   Y 
Sbjct: 197 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGEMLQKGIKPSTILYN 256

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
            +++    AG+  P      +MT +G  ++K  Y+
Sbjct: 257 IIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 291


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 24/231 (10%)

Query: 1   MRLLQSIYRHHK---------SVGGALGRRFFVTSAGAEEYA-RRNYANNASEYNTVVTS 50
           +RL  S++R H+         S+  ALG+    + A +   A  R +  +   YNT+   
Sbjct: 147 VRLFLSLHRSHRVVQDLPLFNSLLDALGKSRHASKAASLVRALERRFPPDVVTYNTLADG 206

Query: 51  LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG---- 106
               +      D+   M   GV PT+  ++ ++ G  +  ++Q  + F  QMK  G    
Sbjct: 207 WCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDE 266

Query: 107 -FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
              PD+  Y  +I   G     D+A ++F+EM K    P+  TY  L+      G ++  
Sbjct: 267 SCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDA 326

Query: 166 YAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKG 214
             +  DM       +   Y  LI    H  KI RA       ++L+E+ KG
Sbjct: 327 VTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRA-------MKLMERMKG 370



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 7/198 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++  L    +    R ++D+M  +G  P+   +++LI    K   ++D     D M 
Sbjct: 275 YTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMV 334

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              ++P+V  Y  LI         D+A+++ E MK    +P  QTY  L+      G+++
Sbjct: 335 RKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIE 394

Query: 164 PVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRADDTATK---IIELVEQSKGWSSVE 219
               +   M+     L ++  Y  +I+A   +  RA+D AT    ++E+VE  +G+    
Sbjct: 395 KALCLFERMSKGEDCLPNQDTYNIIISAMFVR-KRAEDMATAARMVMEMVE--RGYLPRR 451

Query: 220 TSGNNAENEMMGVSKEEL 237
              N   N +M    +++
Sbjct: 452 FMLNRVLNGLMLTGNQQI 469



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 9/237 (3%)

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
           F PDV  YN L     + K++ +A+ +  +M +  V P   TY  +L     AGQ+   +
Sbjct: 193 FPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAW 252

Query: 167 AIVRDMTAAGAGLDKFCYAGLIT----AHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                M   GA  D+ C   +++     H   +    D A K+ +  E SK   +   + 
Sbjct: 253 NFFLQMKKRGAK-DESCKPDIVSYTTIIHGLGVAGQLDKARKLFD--EMSKEGCTPSVAT 309

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
            NA  +++   K  + +  T      R  ++  ++T Y V       +  +     L+E 
Sbjct: 310 YNALIQVI-CKKGNVEDAVTVFDDMVRKDYMPNVVT-YTVLIRGLCHVGKIDRAMKLMER 367

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
           +K +   P V      IR     G+I+    +FE     E   P +    ++  AMF
Sbjct: 368 MKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAMF 424


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  R++   +   Y TV+    S        ++ D M+  G++P     ++LI G  + 
Sbjct: 561 DDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRS 620

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +   + +  +M +NG +PD   YN LI    K  N ++A  +  EM+K  ++ N  TY
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITY 680

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             +LN   A G++     ++R M   G   D   Y+ LI  H ++
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L    ++   +DV  +M+  G+ P    +++L+V   +   + +     D+M 
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMS 389

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD+  ++ LI V  +  +  QA+  F EM++  + P+   Y  L++     G L 
Sbjct: 390 RRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALS 449

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
               +  +M A G  +D   Y   +     K   AD
Sbjct: 450 DALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 44/208 (21%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +RR    +   +++++  L      +     + +M   G+ P   ++  LI G  + 
Sbjct: 386 DEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYN-YLISVC--------------------------- 121
             L D    RD+M A G   DV  YN +L  +C                           
Sbjct: 446 GALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTF 505

Query: 122 -----GKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL--------DPVY 166
                G CK  N D+A+ +FE M +  +KP+  TY  L++    AG++        D + 
Sbjct: 506 TTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIR 565

Query: 167 A-IVRDMTAAGAGLDKFCYAGLITAHTN 193
             I+ D  + G  L+ FC +GL+    N
Sbjct: 566 KDIIPDHISYGTVLNGFCSSGLLPEALN 593



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 38/315 (12%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           NA+ YNT++  +  +      ++++D+M   GV P    F SLI V    G   Q    F
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           R +M+ +G +PD  +Y  LI   G C+N     A+++ +EM       +  TY   LN  
Sbjct: 421 R-EMERSGIVPDNVIYTILID--GFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGL 477

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ----- 211
                      +  +M   G   D + +  LI  +       D    K + L E      
Sbjct: 478 CKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCK-----DGNMDKALNLFEAMVRTN 532

Query: 212 ---SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-- 266
               K   +    G     E MG +KE   ++   + +              H+++    
Sbjct: 533 LKPDKVTYNTLIDGFCKAGE-MGRAKELWDDMIRKDIIPD------------HISYGTVL 579

Query: 267 ---CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
              C+     +A+    +ML+K  + P++      I+ Y  SGD+   ++     I +  
Sbjct: 580 NGFCSSGLLPEALNLCDQMLEKGIR-PNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 324 FPPAELYATLVEGAM 338
            P +  Y TL++G +
Sbjct: 639 IPDSFSYNTLIDGYL 653



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 115/318 (36%), Gaps = 30/318 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R     N    N +V +L   R+F  +     DM   GV      +++LI    +  
Sbjct: 247 EVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREG 306

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +++ F   +   + G  P +  YN ++    K    D+A  +  EM +  + PN  TY 
Sbjct: 307 LVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYN 366

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA------------HTNKIPRA 198
            LL        +     I  +M+  G   D   ++ LI              H  ++ R+
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS 426

Query: 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
                 +I  +    G+       N A ++ + +  E L           RG F+   + 
Sbjct: 427 GIVPDNVIYTI-LIDGFCR-----NGALSDALKMRDEML----------ARGCFMD--VV 468

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
            Y+   +   + K     + L   + +    PD Y     IR Y   G++D    +FE  
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 319 ICSEKFPPAELYATLVEG 336
           + +   P    Y TL++G
Sbjct: 529 VRTNLKPDKVTYNTLIDG 546



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 2/179 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   YNT +  L  ++ F     ++++M+  G+ P    F +LI G  K 
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKD 515

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             +       + M      PD   YN LI    K     +A  ++++M + ++ P+  +Y
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKII 206
             +LN   ++G L     +   M   G   +      LI  +  +  +P+A +  +K+I
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMI 634



 Score = 44.7 bits (104), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC--GK 123
           M+ +G+ P    +++LI G +K + L+  F   ++M+  G   ++  YN +++  C  GK
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            + ++Q +R   +M +  + P+G TY  L+N   +   +   +    +M   G
Sbjct: 693 MQEAEQVLR---KMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 159/416 (38%), Gaps = 49/416 (11%)

Query: 16  GALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G+L R  +V  A    +E +R     N    N +V +L    +   +      +   GV 
Sbjct: 208 GSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVY 267

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAI 131
           P    +++LI        +++ F   + M   GF P V  YN +I+  G CK+   ++A 
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVIN--GLCKHGKYERAK 325

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +F EM +  + P+  TY  LL      G +     +  DM +     D  C++ +++  
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLF 385

Query: 192 T------------NKIPRA----DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE 235
           T            N +  A    D+    I+      KG  SV     N  NEM+     
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM---NLRNEML----- 437

Query: 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIV 295
                       ++G  +   +  Y+   H   + K +   + L   + +    PD Y +
Sbjct: 438 ------------QQGCAMD--VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTL 483

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVN 355
              I  +   G++ N  ++F+             Y TL++G  FG     +  A++   +
Sbjct: 484 TILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG--FGKVGD-IDTAKEIWAD 540

Query: 356 MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           M S+ I  +P   S  +LV A    G    A  +WD M ++ I P++    +   G
Sbjct: 541 MVSKEILPTPISYS--ILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 133/332 (40%), Gaps = 31/332 (9%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + ++     YNTV+  L    ++   ++V+ +M+  G+ P    + SL++   K   + +
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           T      M++   +PD+  ++ ++S+  +  N D+A+  F  +K+  + P+   Y  L+ 
Sbjct: 359 TEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ 418

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIELVEQS 212
                G +     +  +M   G  +D   Y  ++     +  +  AD    ++ E     
Sbjct: 419 GYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP 478

Query: 213 KGWS-SVETSGN----NAEN--EMMGVSKEELYNLPTAEYVHRRGGF------------- 252
             ++ ++   G+    N +N  E+    KE+   L    Y     GF             
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538

Query: 253 ---LSRLL----TVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
              +S+ +      Y +  +A C++    +A     EM+ K+ K P V I    I+ Y  
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK-PTVMICNSMIKGYCR 597

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           SG+  +G    E  I     P    Y TL+ G
Sbjct: 598 SGNASDGESFLEKMISEGFVPDCISYNTLIYG 629



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 2/153 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +V +L S+        V+D+M+   ++PT  + +S+I G  +     D   F ++M 
Sbjct: 553 YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMI 612

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE--VKPNGQTYVCLLNACAAAGQ 161
           + GF+PD   YN LI    + +N  +A  + ++M++ +  + P+  TY  +L+      Q
Sbjct: 613 SEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQ 672

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +     ++R M   G   D+  Y  +I    ++
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 4/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++            ++++ DM+   + PT   +  L+        L + F   D+M 
Sbjct: 518 YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMI 577

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    P V + N +I    +  N+       E+M      P+  +Y  L+        + 
Sbjct: 578 SKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMS 637

Query: 164 PVYAIVRDMTAAGAGL--DKFCYAGLIT--AHTNKIPRADDTATKIIE 207
             + +V+ M     GL  D F Y  ++      N++  A+    K+IE
Sbjct: 638 KAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIE 685


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 5/205 (2%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   +   Y TV+  L    +    R V+D+M ++G +P+   +++LI  T K   L+D 
Sbjct: 279 NCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDA 338

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D M   G++P+V  Y  LI          +A+++ + MK    +PN QTY  L+  
Sbjct: 339 VAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRY 398

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK---IIELVEQS 212
               G+++    +   M+     L       +I +      RA+D A     ++E+V+  
Sbjct: 399 SLEEGEIEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVD-- 456

Query: 213 KGWSSVETSGNNAENEMMGVSKEEL 237
           +G+   +   N   N +M    +EL
Sbjct: 457 RGYLPRKFMFNRVLNGLMLTGNQEL 481



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 17/215 (7%)

Query: 1   MRLLQSIYRHH---------KSVGGALGRRFFVTSAGAEEYA-RRNYANNASEYNTVVTS 50
           +RL  S++R H          S+  AL +    + A +   A  + +  +A  YNT+   
Sbjct: 159 IRLFLSLHRSHGIAQDLPLFNSLLDALVKSRRASKAASLVRALEQRFPPDAVTYNTLADG 218

Query: 51  LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG---- 106
               +      D+   M+  G+ PT+  ++ ++ G  +  +LQ  + F  QMK  G    
Sbjct: 219 WCRVKDTSRALDILRQMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDE 278

Query: 107 -FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
              PDV  Y  ++   G     D+A ++F+EM     KP+  TY  L+      G L+  
Sbjct: 279 NCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDA 338

Query: 166 YAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRA 198
            A+  DM   G   +   Y  LI    H  K+ RA
Sbjct: 339 VAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRA 373



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 133/322 (41%), Gaps = 21/322 (6%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+     LF+SL+   +K  R          ++   F PD   YN L     + K++ +A
Sbjct: 170 GIAQDLPLFNSLLDALVKSRRASKAASLVRALEQR-FPPDAVTYNTLADGWCRVKDTSRA 228

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT- 189
           + I  +M +  + P   TY  +L     +GQL   +     M   G+  D+ C   +++ 
Sbjct: 229 LDILRQMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSN-DENCKPDVVSY 287

Query: 190 ---AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV 246
               H   +    D A K+ +  E S       T+  NA   ++ V+ ++  NL  A  V
Sbjct: 288 TTVLHGLGVAGQLDKARKVFD--EMSIEGCKPSTATYNA---LIQVTCKK-GNLEDAVAV 341

Query: 247 HR---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
                R G++  ++T   +    C   K V+AM+ LL+ +K +   P+V      IR  L
Sbjct: 342 FDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMK-LLDRMKSEGCEPNVQTYNVLIRYSL 400

Query: 304 HSGDIDNGHKVFEDYICSEK-FPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI- 361
             G+I+ G  +FE     E+  P  + Y  ++         + M +A   +V M  R   
Sbjct: 401 EEGEIEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYL 460

Query: 362 ---FLSPRMGSDLLLVAAGEKS 380
              F+  R+ + L+L    E S
Sbjct: 461 PRKFMFNRVLNGLMLTGNQELS 482


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 22/282 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++     +    + R V+D +   G++P+   F++L+ G ++   L + F  +  M 
Sbjct: 131 FNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 190

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  D A  +F+EM    + PNG T+  L++     G+
Sbjct: 191 ASGVEPDVYTYSVLIN--GLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 248

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVE 219
           +D    I + M +     D   Y  LI     K  + +A +   ++     + KG    +
Sbjct: 249 VDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEM-----RMKGLKPDK 303

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS--RLLTVYHVAFHA--CAELKDVQA 275
            +     +   G  KE   +L TA + HR+       RL  V +    +  C E + V A
Sbjct: 304 ITYTTLID---GCCKEG--DLETA-FEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDA 357

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
            + L EML    K PD       I  +   GD+  G K+ ++
Sbjct: 358 EKMLREMLSVGLK-PDTGTYTMIINEFCKKGDVWTGSKLLKE 398



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +      +++ D+M + G++P +  + +LI G  K   L+  F  R +M 
Sbjct: 271 YNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMI 330

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
                 D  VY  LIS +C + ++ D A ++  EM    +KP+  TY  ++N     G +
Sbjct: 331 QENIRLDDVVYTTLISGLCQEGRSVD-AEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 389

Query: 163 DPVYAIVRDMTAAG 176
                ++++M   G
Sbjct: 390 WTGSKLLKEMQRDG 403



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 64/165 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   +      +++LI G  K 
Sbjct: 222 DEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKK 281

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+      D+M+  G  PD   Y  LI  C K  + + A    + M +  ++ +   Y
Sbjct: 282 GDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVY 341

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G+      ++R+M + G   D   Y  +I     K
Sbjct: 342 TTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 386


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%)

Query: 25  TSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           TS+      +R +A +A  YN VV       +     +  ++M +  V PT   + S+I 
Sbjct: 78  TSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIID 137

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G  K  RL + +   ++ K+ G   +V VY+ LI   GK    D+A  I EEM K  + P
Sbjct: 138 GLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAP 197

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           N  T+  L++A   A +++      + M       + + Y+ LI
Sbjct: 198 NVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILI 241



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 16/281 (5%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R +++D+   G  P    +  LI G  K  + ++T      MK  GF  D   YN ++  
Sbjct: 44  RAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDG 103

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+A    EEMK   V P   TY  +++  A   +LD  Y +  +  + G  L+
Sbjct: 104 FCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELN 163

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG-----WSSVETSGNNAENEMMGVSKE 235
              Y+ LI     K+ R D+    + E++++        W+S+          M  + K 
Sbjct: 164 VIVYSSLIDGF-GKVGRIDEAYLILEEMMKKGLAPNVYTWNSL----------MDALVKA 212

Query: 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIV 295
           E  N     +   +    S     Y +  +    ++         + ++K    P+V   
Sbjct: 213 EEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTY 272

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
              I      G+I +   +FE +  +   P A  +  L+EG
Sbjct: 273 TTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEG 313



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 71/161 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   ++     + Y +++  L    R      ++++    G++    ++ SLI G  K 
Sbjct: 118 EEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 177

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + +   ++M   G  P+V  +N L+    K +  ++A+  F+ MK+ +  PN  TY
Sbjct: 178 GRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTY 237

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+N      + +  +   ++M   G   +   Y  +I+ 
Sbjct: 238 SILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISG 278



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 110/277 (39%), Gaps = 12/277 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  LT   +      ++  M   G       +++++ G  K  ++   +   ++MK
Sbjct: 62  YSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMK 121

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P VA Y  +I    K    D+A  +FEE K   ++ N   Y  L++     G++D
Sbjct: 122 VKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRID 181

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y I+ +M   G   + + +  L+ A           A +I E +   +    ++ S N
Sbjct: 182 EAYLILEEMMKKGLAPNVYTWNSLMDALVK--------AEEINEALICFQSMKEMKCSPN 233

Query: 224 NAENEMM--GVSKEELYNLPTAEYVH-RRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                ++  G+ + + YN     +   ++ G +  ++T Y       A++ ++    +L 
Sbjct: 234 TYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVT-YTTMISGLAKVGNITDACSLF 292

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           E  K +   PD       I    H+      + VFE+
Sbjct: 293 ERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEE 329



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L   +++      + +M   G+ P    + ++I G  K   + D     
Sbjct: 233 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLF 292

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++ KANG +PD A +N LI        + +A  +FEE +    + N +  + LL+A   A
Sbjct: 293 ERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKA 352

Query: 160 ---GQLDPVYAIVRDMT 173
               Q   V A++R++ 
Sbjct: 353 ECIEQAAVVGAVLREIA 369



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 58/151 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++  A N   +N+++ +L            +  M      P    +  LI G  + 
Sbjct: 188 EEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRV 247

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +    F F  +M+  G +P+V  Y  +IS   K  N   A  +FE  K     P+  ++
Sbjct: 248 QKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASF 307

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             L+   + A +    Y +  +    G  ++
Sbjct: 308 NALIEGMSHANRAIEAYHVFEETRLRGCRIN 338



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%)

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +D      +M   G  PD+ + N  +    K  + ++   IFE++K Y   P+ ++Y 
Sbjct: 4   RKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYS 63

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L++    AGQ     +I   M   G  LD   Y  ++
Sbjct: 64  ILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVV 101


>gi|260766045|gb|ACX50053.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 187

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 8   FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 67

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 68  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 125

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 126 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 176


>gi|260765969|gb|ACX50015.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765971|gb|ACX50016.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765973|gb|ACX50017.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765975|gb|ACX50018.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765977|gb|ACX50019.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765979|gb|ACX50020.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765981|gb|ACX50021.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765983|gb|ACX50022.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765985|gb|ACX50023.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765987|gb|ACX50024.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765989|gb|ACX50025.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765991|gb|ACX50026.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765993|gb|ACX50027.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765995|gb|ACX50028.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765997|gb|ACX50029.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765999|gb|ACX50030.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766001|gb|ACX50031.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766003|gb|ACX50032.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766005|gb|ACX50033.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766007|gb|ACX50034.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766009|gb|ACX50035.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766011|gb|ACX50036.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766013|gb|ACX50037.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766015|gb|ACX50038.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766017|gb|ACX50039.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766019|gb|ACX50040.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766021|gb|ACX50041.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766023|gb|ACX50042.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766025|gb|ACX50043.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766027|gb|ACX50044.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766029|gb|ACX50045.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766031|gb|ACX50046.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766033|gb|ACX50047.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766035|gb|ACX50048.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766037|gb|ACX50049.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766039|gb|ACX50050.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766041|gb|ACX50051.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766043|gb|ACX50052.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766047|gb|ACX50054.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766049|gb|ACX50055.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780310|gb|ACX50701.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780312|gb|ACX50702.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780318|gb|ACX50705.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780330|gb|ACX50711.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780332|gb|ACX50712.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780338|gb|ACX50715.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780340|gb|ACX50716.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780344|gb|ACX50718.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780346|gb|ACX50719.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780348|gb|ACX50720.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780394|gb|ACX50743.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780396|gb|ACX50744.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780398|gb|ACX50745.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780400|gb|ACX50746.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780402|gb|ACX50747.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780404|gb|ACX50748.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780406|gb|ACX50749.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780408|gb|ACX50750.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780410|gb|ACX50751.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780412|gb|ACX50752.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780414|gb|ACX50753.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780416|gb|ACX50754.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780418|gb|ACX50755.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780420|gb|ACX50756.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780422|gb|ACX50757.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780424|gb|ACX50758.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 119/281 (42%), Gaps = 18/281 (6%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA---NGFLPDVAVYNYLI 118
           +++D M+  G+ PT   F+S+I G  K  R+ +    RD++       F+P    YN +I
Sbjct: 522 NMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEA---RDKLNTFIKQSFIPTSMTYNCII 578

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
               K    D A  ++ EM + E+ PN  TY  L+N    + ++D    +  DM   G  
Sbjct: 579 DGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLE 638

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
           LD   YA LI     K+   ++      +L+E       V  + N     +M  +   L 
Sbjct: 639 LDITVYATLIAGFC-KMQDMENACKFFSKLLE-------VGLTPNTIVYNIMISAYRNLN 690

Query: 239 NLPTAEYVHRR--GGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIV 295
           N+  A  +H+      +   L +Y         E K   A++   EML +    PD+++ 
Sbjct: 691 NMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRG-IVPDIFMY 749

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
              I    + G ++N  K+ ++   +   P   LY TL+ G
Sbjct: 750 NVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAG 790



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R   + N   Y +++       +  L   ++DDM   G++    ++ +LI G  K  
Sbjct: 596 EMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQ 655

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +++   F  ++   G  P+  VYN +IS      N + A+ + +EM   ++  + + Y 
Sbjct: 656 DMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYT 715

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            L++     G+L     +  +M   G   D F Y  LI    N
Sbjct: 716 SLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCN 758



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 134/365 (36%), Gaps = 39/365 (10%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
            +V + ++  G++P    +  L+ G+ K    +  F   DQM A G +P    +N +I+ 
Sbjct: 486 HEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIING 545

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K     +A        K    P   TY C+++     G +D   ++ R+M  +    +
Sbjct: 546 LCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPN 605

Query: 181 KFCYAGLIT--AHTNKIPRA----DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
              Y  LI     +NK+  A    DD   K +EL        +   +G     +M    K
Sbjct: 606 VITYTSLINGFCKSNKMDLALKMHDDMKRKGLEL---DITVYATLIAGFCKMQDMENACK 662

Query: 235 EELYNLPTAEYVHRRGGFLSRLL--------TVYHVAFHACAELKDVQAMETLLEMLKKD 286
                            F S+LL         VY++   A   L +++A   L + +  +
Sbjct: 663 -----------------FFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINN 705

Query: 287 RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM 346
           +   D+ I    I   L  G +     ++ + +C    P   +Y  L+ G         +
Sbjct: 706 KIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLC---NHGQL 762

Query: 347 QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVE 406
           + A   L  M+  NI  +P +     L+A   K G    A  + D M  + + P     +
Sbjct: 763 ENAGKILKEMDGNNI--TPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYD 820

Query: 407 AYYNG 411
              NG
Sbjct: 821 ILVNG 825



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L  + +     D+Y +M+  G+ P   +++ LI G     +L++      +M 
Sbjct: 714 YTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMD 773

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            N   P V +YN LI+   K  N  +A R+ +EM    + P+  TY  L+N 
Sbjct: 774 GNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 65/157 (41%)

Query: 32  YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           + ++++   +  YN ++     +        VY +M    + P    + SLI G  K ++
Sbjct: 562 FIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNK 621

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
           +       D MK  G   D+ VY  LI+   K ++ + A + F ++ +  + PN   Y  
Sbjct: 622 MDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNI 681

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +++A      ++    + ++M       D   Y  LI
Sbjct: 682 MISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLI 718



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 4/153 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++++  +        +++ +M+ + +     ++ SLI G +K  +L       
Sbjct: 675 NTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLY 734

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M   G +PD+ +YN LI+  G C +   + A +I +EM    + P    Y  L+    
Sbjct: 735 SEMLCRGIVPDIFMYNVLIN--GLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHF 792

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             G L   + +  +M   G   D   Y  L+  
Sbjct: 793 KEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           D+M   G  P +  YN++I   G CK    D A  +   + +  +KPN  TY  L+    
Sbjct: 455 DKMIGKGITPSLVSYNHMI--LGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSF 512

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
             G  +  + +   M AAG     + +  +I     K+ R  +   K+   ++QS
Sbjct: 513 KKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLC-KVGRVSEARDKLNTFIKQS 566


>gi|341605711|gb|AEK82958.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605785|gb|AEK82995.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605787|gb|AEK82996.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605789|gb|AEK82997.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605793|gb|AEK82999.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605795|gb|AEK83000.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R N   +   YNT++  L  ++R     D+  +M     +P    +  L+ G  K  R++
Sbjct: 3   RINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVE 62

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVC 151
           +      +MK  G   DV VY+ LIS  G C     D+   +F+EM +  + PN   Y C
Sbjct: 63  EAMRLLGEMKRKGLEVDVVVYSTLIS--GFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           L+N     G      A++  MT  G   D + Y  +I
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMI 157



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 153/398 (38%), Gaps = 41/398 (10%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+    +   Y+T+++   S+      + ++D+M+  G+ P   ++  LI G  K  
Sbjct: 70  EMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKG 129

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQT 148
             ++       M   G  PD  VY Y   + G CK+  + +A+ +F+ M +   +P+  T
Sbjct: 130 LWREATAVLHTMTERGIQPD--VYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L+N     G +   + I   M   G  L+   Y  LI    N             +L
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNN-----------GKL 236

Query: 209 VEQSKGWSSVETSGNNAENEMM-------GVSKEELYNLPTAEY--VHRRGGFLSRLLTV 259
            E  K +SS+   GN  E +++       G+ KE   +     Y  +  RG F   L T 
Sbjct: 237 DEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSF-GNLFTC 295

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDRK-----SPDVYIVMQNIRCYLHSGDIDNGHKV 314
            H+      E      ++  +E+ K+  K     S   Y VM +  C +H  +   G  +
Sbjct: 296 -HILI---GEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKG--L 349

Query: 315 FEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLV 374
           F     S   P    Y TL+           ++ A+     M   N    P   S  +++
Sbjct: 350 FSRMKISGLSPTLFDYNTLMASLC---KESSLEQARRLFQEMKESNC--EPDTISFNIMI 404

Query: 375 AAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
               K+G   +A  + + MQ   +TP      ++ N L
Sbjct: 405 DGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRL 442



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%)

Query: 43  EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           +YNT++ SL  +      R ++ +M     +P    F+ +I GT+K   +       + M
Sbjct: 364 DYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDM 423

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +  G  PD   Y+  I+   K    ++A   F+ M    + P+   Y  L+       ++
Sbjct: 424 QQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEI 483

Query: 163 DPVYAIVRDMTAAGAGLD 180
           + V  ++R M   G  LD
Sbjct: 484 EEVINLLRQMADMGVILD 501



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 5/172 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +++ Y+ ++            + ++  M + G+ PT   +++L+    K S L+      
Sbjct: 326 SSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLF 385

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +MK +   PD   +N +I    K  +   A  +  +M++  + P+  TY   +N  +  
Sbjct: 386 QEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKL 445

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           GQ++        M A+G   D   Y  LI          +D   ++I L+ Q
Sbjct: 446 GQMEEAKGAFDSMIASGITPDNHVYDSLIKGFG-----LNDEIEEVINLLRQ 492



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 47/93 (50%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MK    LPD+  YN +I+   K K  ++A+ +  EM+    +PN  TY  L++     G+
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           ++    ++ +M   G  +D   Y+ LI+   +K
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSK 93


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%)

Query: 53  SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112
           ++R F LL    D+M+  G+QPT   + SLI    K +R+++      +++  G LPD+ 
Sbjct: 407 AKRAFGLL----DEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDII 462

Query: 113 VYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170
           V+N LI   G C N   D+A ++ +EM   +V P+  TY  L+      G+++    ++ 
Sbjct: 463 VFNALID--GHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLD 520

Query: 171 DMTAAGAGLDKFCYAGLITAHTNK 194
           +M   G   D   Y  LI+ ++ +
Sbjct: 521 EMKRRGIKPDHISYNTLISGYSKR 544



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++     + +    R + D+M   G++P    +++LI G  K   ++D F  RD+M 
Sbjct: 499 YNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMM 558

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF P +  YN LI   G CKN   + A  + +EM    + P+  TY+ ++ A      
Sbjct: 559 TTGFDPTILTYNALIQ--GLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDD 616

Query: 162 LD 163
           L+
Sbjct: 617 LE 618



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 150/390 (38%), Gaps = 18/390 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R N  ++   +N ++  L  + +    ++    M   GV+P    ++++I G     
Sbjct: 206 EMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRG 265

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           + Q        MK  G  PD   YN  IS  G CK    ++A  +  +M +  + PN  T
Sbjct: 266 KFQRARVIFQTMKDKGLEPDCYTYNSFIS--GLCKEGRLEEASGLICKMLEGGLVPNAVT 323

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G LD  YA   +M + G       Y   I A   +  R  D    I E+
Sbjct: 324 YNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFME-GRMGDADNMIKEM 382

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
            E  KG      + N   N        +       E V   G  +   L  Y    +   
Sbjct: 383 RE--KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMV---GKGIQPTLVTYTSLIYVLG 437

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           +   ++  + L   ++++   PD+ +    I  +  +G+ID   ++ ++    +  P   
Sbjct: 438 KRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEI 497

Query: 329 LYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            Y TL++    GY  +G ++ A+  L  M  R I   P   S   L++   K G    A 
Sbjct: 498 TYNTLMQ----GYCREGKVEEARQLLDEMKRRGI--KPDHISYNTLISGYSKRGDMKDAF 551

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL-KDRE 416
            + D M      P++    A   GL K++E
Sbjct: 552 RVRDEMMTTGFDPTILTYNALIQGLCKNQE 581



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 55  RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R F LL+++ D+M    V P    +++L+ G  +  ++++     D+MK  G  PD   Y
Sbjct: 479 RAFQLLKEM-DNM---KVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISY 534

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N LIS   K  +   A R+ +EM      P   TY  L+       + +    ++++M +
Sbjct: 535 NTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVS 594

Query: 175 AGAGLDKFCYAGLITA 190
            G   D   Y  +I A
Sbjct: 595 KGITPDDSTYLSIIEA 610



 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 61  RDVYDDMML--DGVQPTRDLFHSLIVGT----MKGSRLQDTFFFRDQMKANGFLPDVAVY 114
           R ++D++ L  D V     L   L+V       K +   + F+    +K  GF+P++   
Sbjct: 128 RTIFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYL---IKEKGFVPNIETC 184

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           N ++S+  K   +  A  ++ EM +  ++ +  T+  ++N     G+L      +  M  
Sbjct: 185 NQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMET 244

Query: 175 AGAGLDKFCYAGLITAH 191
            G   +   Y  +I  H
Sbjct: 245 LGVKPNVVTYNTIIHGH 261


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 126/294 (42%), Gaps = 18/294 (6%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE     Y  +   +N ++ S   +    L + V+D +    ++P+   F++L+ G +K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L + F  ++ M+A+G   DV  Y+ LI+   K    D A  +F+EM    + PNG T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTF 244

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKI-I 206
             L++      ++D    I + M +     D   Y  LI     K  + +A D   ++ +
Sbjct: 245 TTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAFH 265
           + ++  K   +    GN  E            +L TA EY  R      RL  V + A  
Sbjct: 305 KGLKPDKITYTTLIDGNCKEG-----------DLETAFEYRKRMIKENIRLDDVAYTALI 353

Query: 266 A--CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           +  C E + V A + L EML    K P++      I  +   GD+  G K+ ++
Sbjct: 354 SGLCQEGRSVDAEKMLREMLSVGLK-PEIGTYTMIINEFCEKGDVWTGLKLLKE 406



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           G    RR  V     ++   ++ + +   YNT++  L  +      +D+ D+M + G++P
Sbjct: 250 GHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKP 309

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQM-KANGFLPDVAVYNYLIS-VCGKCKNSDQAIR 132
            +  + +LI G  K   L+  F +R +M K N  L DVA Y  LIS +C + ++ D A +
Sbjct: 310 DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA-YTALISGLCQEGRSVD-AEK 367

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +  EM    +KP   TY  ++N     G +     ++++M   G
Sbjct: 368 MLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDG 411


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 5/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++++M+  G+ P    F +LI    K   +        QM 
Sbjct: 209 YSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQML 268

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + GF PD+  YN LI   G CK  D  Q   + +EM    +KP+  TY  L++ C   G 
Sbjct: 269 SQGFSPDLITYNTLIY--GLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGD 326

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           L+  +   + M      LD   Y  L++    +  RADD      E++
Sbjct: 327 LETAFEFRKRMIKESIRLDNVAYTALVSGLCQE-GRADDAEKMFREML 373



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N V+     +      + V+D +   G++P+   F++L+ G ++   L + F  +  M 
Sbjct: 139 FNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           A+G  PDV  Y+ LI+  G CK S  D+A  +F EM    + PNG T+  L++     G 
Sbjct: 199 ASGVQPDVYTYSVLIN--GLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGM 256

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +D    I + M + G   D   Y  LI
Sbjct: 257 VDSAMEIYKQMLSQGFSPDLITYNTLI 283



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + ++ +   YNT++  L  +     +R + D+M ++G++P +  + +LI G  K   L+ 
Sbjct: 270 QGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLET 329

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCL 152
            F FR +M       D   Y  L+S  G C+   +D A ++F EM    +KP+  TY  +
Sbjct: 330 AFEFRKRMIKESIRLDNVAYTALVS--GLCQEGRADDAEKMFREMLSVGLKPDNGTYTMI 387

Query: 153 LNACAAAGQLDPVYAIVRDMTAAG 176
           +N     G +     ++++M   G
Sbjct: 388 INEFCKKGDVRTASRLLKEMQRDG 411



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 55/133 (41%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++Y  M+  G  P    +++LI G  K   L+      D+M  NG  PD   Y  LI  C
Sbjct: 262 EIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGC 321

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K  + + A    + M K  ++ +   Y  L++     G+ D    + R+M + G   D 
Sbjct: 322 CKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDN 381

Query: 182 FCYAGLITAHTNK 194
             Y  +I     K
Sbjct: 382 GTYTMIINEFCKK 394


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M  DGV+P    + SL+    K  R  +     D M   G  PD+A Y  L+   G CK 
Sbjct: 270 MRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ--GHCKE 327

Query: 127 SD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               ++ ++F+ M +  VKP+  TY  L++ C  AG++D    ++  M + G   D   Y
Sbjct: 328 GRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 387

Query: 185 AGLITAHTNKIPRADDTATKIIELV 209
             LI  +  ++ R DD      E+V
Sbjct: 388 GTLINGYC-RVSRMDDALALFKEMV 411



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 2/170 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y++++  L    R    R ++D M   G++P    + +L+ G  K  R+ ++    
Sbjct: 278 NVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLF 337

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M   G  PD+  YN LI  C      D+A ++   M    VKP+  TY  L+N     
Sbjct: 338 DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 397

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
            ++D   A+ ++M ++G   +   Y  ++    HT +   A +    I +
Sbjct: 398 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITK 447



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 4/128 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +   +R    + + Y T++     + R      ++D M+  GV+P    +++LI G    
Sbjct: 303 DSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLA 362

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            ++ +       M + G  PD+  Y  LI+  G C+ S  D A+ +F+EM    V PN  
Sbjct: 363 GKMDEATKLLASMVSVGVKPDIVTYGTLIN--GYCRVSRMDDALALFKEMVSSGVSPNII 420

Query: 148 TYVCLLNA 155
           TY  +L  
Sbjct: 421 TYNIILQG 428



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           + M  NG +PD   YN ++   G C +    +AI   ++M+   V+PN  TY  L+N   
Sbjct: 233 NTMVKNGVMPDCMTYNSILH--GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLC 290

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G+      I   MT  G   D   Y  L+  H  +
Sbjct: 291 KNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKE 327


>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Cucumis sativus]
          Length = 1062

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 41/273 (15%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            +NT + ++    +      +Y+ M+  G+ P+   ++++I    +G +L       +  +
Sbjct: 776  FNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEMFNAAR 835

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            ++G  PD   Y  LIS  GK   + +A  +F+EM +  VKP   +Y  ++N  A AG  +
Sbjct: 836  SSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHE 895

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                +++ M       D F Y  LI A+T     ++  A KII  + Q KG         
Sbjct: 896  ETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSE--AEKIINSM-QEKG--------- 943

Query: 224  NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                            +PT                 Y +   A A+   ++  E + + L
Sbjct: 944  ----------------IPTT-------------CAHYDLLLSALAKAGMIRKAERVYDEL 974

Query: 284  KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
            +    SPDV      +R YL  G +  G K FE
Sbjct: 975  QTAGLSPDVTCNRTLMRGYLDYGYVREGIKFFE 1007



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 128/276 (46%), Gaps = 8/276 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N +++SL  +     +++++  M+  GV  +   +  +I   +K    ++ F   ++MK
Sbjct: 262 FNFMLSSLQKKGLHAKVKELWMQMVEIGVTFSDFTYTVVINSLVKEGHSEEAFKVFNEMK 321

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             GF+P+   YN LIS+  K +NSD+ +R++++M+  ++ P+  T   LL      G   
Sbjct: 322 NCGFIPEEVTYNLLISLSIKRENSDEVLRLYKDMRDKDIVPSNYTCSSLLTLFYKNGDYS 381

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
              ++  +M +    +D+  Y GL+     K+   +D A K  E +EQ    +  ++   
Sbjct: 382 KALSLFSEMESKKVVVDEVIY-GLLIRIYGKLGLYED-AHKTFEEMEQLGLLTDEKSYLA 439

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
            A+  +   + E+   L   E +  R  +LSR    Y V+       +D+++ E+  + L
Sbjct: 440 MAQVHLNSRNFEK--ALDIIELMKSRNIWLSRF--AYIVSLQCYVMKEDIRSAESTFQAL 495

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
            K    PD    +  +  YL   D+ N  K F  +I
Sbjct: 496 SKT-GLPDARSCIYILNLYLKL-DLVNKAKDFIAHI 529



 Score = 38.1 bits (87), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 26/146 (17%), Positives = 63/146 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  V+ +     +  L  + + +M+  G++P      +++    +    +    F   +K
Sbjct: 192 YTIVLRAYGQVGKIKLAEETFLEMLEVGLEPDEVACGTMLCTYARWGHHKTMLSFYSAVK 251

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P +AV+N+++S   K     +   ++ +M +  V  +  TY  ++N+    G  +
Sbjct: 252 DRGIVPPIAVFNFMLSSLQKKGLHAKVKELWMQMVEIGVTFSDFTYTVVINSLVKEGHSE 311

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT 189
             + +  +M   G   ++  Y  LI+
Sbjct: 312 EAFKVFNEMKNCGFIPEEVTYNLLIS 337


>gi|186510399|ref|NP_189158.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273968|sp|Q9LSF5.1|PP254_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g25210, mitochondrial; Flags: Precursor
 gi|9294178|dbj|BAB02080.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643472|gb|AEE76993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 379

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 44  YNTVVTSLTSQRRFFLLR--DVYDDMML-DGVQPTRDLFHSLIVGTMKG-SRLQDTFFF- 98
           YN ++      R+F   R  DVY+ M+  D  +P  + +  L+   +K  ++L   + + 
Sbjct: 146 YNCII-RFCCGRKFLFNRAFDVYNKMLRSDDSKPDLETYTLLLSSLLKRFNKLNVCYVYL 204

Query: 99  ------RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                   QMK+NG +PD  V N +I    KC   D+AIR+F+EM  Y  +PN  TY  L
Sbjct: 205 HAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYL 264

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
           +      G++       ++M   G   +  CY  LI + +  + R  D A +++
Sbjct: 265 VKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLS--MERRLDEAVEVV 316


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + R Y  N   Y++++ SL  ++R  L+  V   M+ +   P   ++  +I G  K  + 
Sbjct: 671 SERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKT 730

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           ++ +    +M+  G  P+V  Y  +I   GK    +Q + ++ +M      PN  TY  L
Sbjct: 731 EEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVL 790

Query: 153 LNACAAAGQLDPVYAIVRDM 172
           +N C + G LD  + ++ +M
Sbjct: 791 INHCCSTGLLDEAHRLLDEM 810



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 55/131 (41%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++  +MM  G  P    +  +I      S+++  F   ++MK NG +P V  Y  LI   
Sbjct: 439 EIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSF 498

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K     QA   F+EM +    PN  TY  L++A   A ++     +   M   G+  + 
Sbjct: 499 CKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNV 558

Query: 182 FCYAGLITAHT 192
             Y  LI  H 
Sbjct: 559 VTYTALIDGHC 569



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 128/340 (37%), Gaps = 52/340 (15%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++       +    ++V+  M   G  P    + SLI    K  RL       
Sbjct: 643 NQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVL 702

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M  N   P+V +Y  +I    K   +++A R+  +M++    PN  TY  +++     
Sbjct: 703 SKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKI 762

Query: 160 GQLDPVYAIVRDMTAAGAG---------LDKFCYAGLI-TAH-------TNKIPRADDTA 202
           G+++    + RDM + G           ++  C  GL+  AH           PR   + 
Sbjct: 763 GKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSY 822

Query: 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV 262
            KIIE   + +  +S+      +ENE   V  E LY +    ++  + G L         
Sbjct: 823 RKIIEGFNR-EFITSIGLLDELSENE--SVPVESLYRILIDNFI--KAGRL--------- 868

Query: 263 AFHACAELKDVQAMETLLEMLKKDRKSPDV-----YIVMQNIRCYLHSGDIDNGHKVFED 317
                         E  L +L++   SP +     Y+    I    H+  +D   +++  
Sbjct: 869 --------------EGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYAS 914

Query: 318 YICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNM 356
            I     P    +  L++G    G   + +QL+ D++  M
Sbjct: 915 MINKNVVPELSTFVHLIKGLTRVGKWQEALQLS-DSICQM 953



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
           E   + +  + S Y+ V+  L    +    FLL   +++M  +G+ P+   +  LI    
Sbjct: 443 EMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLL---FEEMKKNGIVPSVYTYTILIDSFC 499

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           K   +Q    + D+M  +   P+V  Y  LI    K +    A ++FE M     KPN  
Sbjct: 500 KAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVV 559

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDM 172
           TY  L++    AGQ+D    I   M
Sbjct: 560 TYTALIDGHCKAGQIDKACQIYARM 584



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 22/198 (11%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   Y  ++ S          R+ +D+M+ D   P    + SLI   +K 
Sbjct: 477 EEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKA 536

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKK-------- 139
            ++ D     + M   G  P+V  Y  LI   G CK    D+A +I+  M+         
Sbjct: 537 RKVFDANKLFEMMLLEGSKPNVVTYTALID--GHCKAGQIDKACQIYARMQGDIESSDID 594

Query: 140 --YEV------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT-- 189
             +++       PN  TY  L++    A +++  + ++  M+  G   ++  Y  LI   
Sbjct: 595 MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGF 654

Query: 190 AHTNKIPRADDTATKIIE 207
             T K+  A +   K+ E
Sbjct: 655 CKTGKLENAQEVFVKMSE 672



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-- 127
           D   P    + +L+ G  K +R+++     D M  NG  P+  VY+ LI   G CK    
Sbjct: 603 DCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALID--GFCKTGKL 660

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
           + A  +F +M +    PN  TY  L+N+     +LD V  ++  M       +   Y  +
Sbjct: 661 ENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDM 720

Query: 188 I 188
           I
Sbjct: 721 I 721



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 20/179 (11%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R N   N   Y +++ +    R+ F    +++ M+L+G +P    + +LI G  K 
Sbjct: 512 DEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKA 571

Query: 90  ----------SRLQ--------DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
                     +R+Q        D +F  D        P++  Y  L+    K    ++A 
Sbjct: 572 GQIDKACQIYARMQGDIESSDIDMYFKLDDNDCET--PNIITYGALVDGLCKANRVEEAH 629

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            + + M     +PN   Y  L++     G+L+    +   M+  G   + + Y+ LI +
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINS 688



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 107 FLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           F+PD   YN ++S  G C+ S   +A+ I + M+     PN  TY  LL+ C   GQL  
Sbjct: 268 FVPDTVFYNRMVS--GLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGR 325

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHT 192
              I+  M   G   ++  +  L+ A+ 
Sbjct: 326 CKRILSMMMTEGCYPNREMFNSLVHAYC 353



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 103/279 (36%), Gaps = 32/279 (11%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC------GKCKNS 127
           P    ++ ++ G  + S  Q+     D+M++   +P+V  Y  L+S C      G+CK  
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCK-- 327

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
               RI   M      PN + +  L++A   +      Y + + M   G       Y   
Sbjct: 328 ----RILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIF 383

Query: 188 I--TAHTNKIPRADDTATKIIELVEQSKGWSSVETSG--------NNAENEMMGVSKEEL 237
           I       ++P +D     ++EL E  K +S +   G        +N    + G  K + 
Sbjct: 384 IGSICSNEELPGSD-----LLELAE--KAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDK 436

Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
                 E + +  GF+    T   V    C   K V+    L E +KK+   P VY    
Sbjct: 437 AFEIICEMMSK--GFVPDDSTYSKVIGFLCDASK-VEKAFLLFEEMKKNGIVPSVYTYTI 493

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            I  +  +G I      F++ +     P    Y +L+  
Sbjct: 494 LIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHA 532



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 114/308 (37%), Gaps = 30/308 (9%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V+ L     F    D+ D M      P    +  L+ G +   +L         M 
Sbjct: 275 YNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMM 334

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY------VCLLNACA 157
             G  P+  ++N L+    K ++   A ++F++M K   +P    Y      +C      
Sbjct: 335 TEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELP 394

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDK---------FCYAGLITAHTNKIPRADDTATKIIEL 208
            +  L+       +M   G  L+K          C AG          + D     I E+
Sbjct: 395 GSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAG----------KFDKAFEIICEM 444

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
           +  SKG+   +++ +     +   SK E   L   E   ++ G +  + T Y +   +  
Sbjct: 445 M--SKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEM--KKNGIVPSVYT-YTILIDSFC 499

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           +   +Q      + + +D  +P+V      I  YL +  + + +K+FE  +     P   
Sbjct: 500 KAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVV 559

Query: 329 LYATLVEG 336
            Y  L++G
Sbjct: 560 TYTALIDG 567


>gi|401420700|ref|XP_003874839.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322491075|emb|CBZ26340.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 278

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 76  RDLFH--SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           R++FH  +L+    +  ++        QMKAN   P+V  Y  LI+ C   K  D A+RI
Sbjct: 48  RNVFHYTTLLTACTRAGQMDAAMMIFRQMKANQVKPNVYTYTSLINGCANAKKLDLALRI 107

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
           F EM+  EV PN +T   L++ C+  GQ    + ++
Sbjct: 108 FAEMRLVEVPPNVKTMTALISVCSRCGQWKKGFQVL 143



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 57/130 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T++T+ T   +      ++  M  + V+P    + SLI G     +L       
Sbjct: 49  NVFHYTTLLTACTRAGQMDAAMMIFRQMKANQVKPNVYTYTSLINGCANAKKLDLALRIF 108

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+     P+V     LISVC +C    +  ++ ++ ++  + PN  TY   ++ C  A
Sbjct: 109 AEMRLVEVPPNVKTMTALISVCSRCGQWKKGFQVLDQCEELFIAPNALTYTAAMDGCRRA 168

Query: 160 GQLDPVYAIV 169
           G   P  A++
Sbjct: 169 GVCTPAIALL 178



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           Y  L++ C +    D A+ IF +MK  +VKPN  TY  L+N CA A +LD    I  +M
Sbjct: 53  YTTLLTACTRAGQMDAAMMIFRQMKANQVKPNVYTYTSLINGCANAKKLDLALRIFAEM 111



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 126 NSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           N + A++ FE M++   V+ N   Y  LL AC  AGQ+D    I R M A     + + Y
Sbjct: 29  NWEGALQTFEHMQQSSLVRRNVFHYTTLLTACTRAGQMDAAMMIFRQMKANQVKPNVYTY 88

Query: 185 AGLITAHTN 193
             LI    N
Sbjct: 89  TSLINGCAN 97


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%)

Query: 23  FVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL 82
           F      ++   +  + N   YN+++ +L   +      +V   M+  GV P    ++S+
Sbjct: 98  FFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           + G     + ++   F  +M+++G  PDV  YN L+    K     +A +IF+ M K  +
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           KP+  TY  LL   A  G L  ++ ++  M   G   + + ++ L+ A+  +
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 269



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    R    R ++D M   G++P    + +L+ G      L +     D M 
Sbjct: 189 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMV 248

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+  V++ L+    K +  ++A+ +F +M++  + PN  TY  +++    +G+++
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
                   M   G   D   Y  LI
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLI 333



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 1/148 (0%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           VV+  T    FF   D+ D M+   + P    ++S+I    K   +         M  +G
Sbjct: 88  VVSYSTVINGFFKEGDL-DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 146

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
            +PD   YN ++          +AI   ++M+   V+P+  TY  L++     G+     
Sbjct: 147 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEAR 206

Query: 167 AIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            I   MT  G   D   Y  L+  +  K
Sbjct: 207 KIFDSMTKRGLKPDITTYGTLLQGYATK 234


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +V SL    R      V  DM   G QPT  ++  L+       R++D       M+
Sbjct: 244 YGIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDME 303

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G +PDV VYN L++   K K  + A R+ ++M+ + + PN +T+  +LN   + G+ D
Sbjct: 304 KDGIVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDD 363

Query: 164 PVYAIVRDM 172
             Y + R M
Sbjct: 364 EAYRVFRRM 372



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 155/408 (37%), Gaps = 66/408 (16%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASE----YNTVVTSLTSQRRFFLLRDVYDDMMLD 70
            G L  RFF       E+AR+      +     Y+TVV SL   R++ L+ DV   M  +
Sbjct: 80  AGMLAYRFF-------EWARKQKRGGCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRRE 132

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV    + F  ++    +  +  +  +  + M+  G +P++A +N L+    K KN  +A
Sbjct: 133 GVVNV-ETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLGALCKSKNVRKA 191

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             IF++M      P+ +TY  LL     A  L  +  +  +M  AG   D   Y G++  
Sbjct: 192 QEIFDKMNG-RFNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQPDIVTY-GIMVD 249

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
              K  R ++    + ++   S+G                          PT        
Sbjct: 250 SLCKTGRVEEAVLVVQDM--SSRGCQ------------------------PTT------- 276

Query: 251 GFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
                   +Y V  H    E++   A+ T L+M +KD   PDV +    +  +      +
Sbjct: 277 -------FIYSVLVHTYGVEMRIEDAVATFLDM-EKDGIVPDVVVYNALVTAFCKVKKFE 328

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGS 369
           N  +V +D       P +  +  ++         K + L +D       R +    +  S
Sbjct: 329 NAFRVMDDMEGHGIAPNSRTWNIILN--------KLISLGKDDEAYRVFRRMIKRCQPDS 380

Query: 370 D--LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415
           D   +++    ++     A  +W  M+ ++  PS+       NGL D+
Sbjct: 381 DTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDK 428



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
           YN +VT+    ++F     V DDM   G+ P    ++ ++   +   +  + +  FR  +
Sbjct: 314 YNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMI 373

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K     PD   Y  +I +  +  N + A+++++ M+  +  P+  T+  L+N     G++
Sbjct: 374 KRCQ--PDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEV 431

Query: 163 DPVYAIVRDMTAAG 176
                ++ DM   G
Sbjct: 432 SQACVLLEDMIEKG 445


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 12/277 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V++ M  +G       + +LI G  +  ++ +      QMK +G  PDV  Y  L++   
Sbjct: 247 VFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFC 306

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +     +A++ FEEM +  ++PN  TY  L++     G++D    ++  M   G      
Sbjct: 307 EVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVV 366

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM-GVSKEELYNLP 241
            +  LI  +  +    D  A  +++ ++ +K   +  T      NE++ G  +++  +  
Sbjct: 367 PFNALIDGYCKRGMMED--AICVLDSMKLNKVCPNSRTY-----NELICGFCRKKSMDRA 419

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
            A         LS  L  Y+   H   + + V +   L  ++ KD   PD       I C
Sbjct: 420 MALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDC 479

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAE--LYATLVEG 336
               G ++  H+VFE     EK   A   LY  L++G
Sbjct: 480 LCKMGKVEQAHQVFESL--KEKHAEANEFLYTALIDG 514



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 60/132 (45%)

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
           F ++  +++ M+  G  P  + +  LI G  K   L   F   + MK +G  P   ++N 
Sbjct: 722 FEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNS 781

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           L+S C K    ++A+R+ + M +Y    + ++Y  L+      G  +    I R + + G
Sbjct: 782 LLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCG 841

Query: 177 AGLDKFCYAGLI 188
              D+  +  L+
Sbjct: 842 YNYDEVVWKVLL 853



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 63/162 (38%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    ++   N   Y  ++       +F     ++  M+ +G  P    F+ L+ G  K 
Sbjct: 494 ESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKE 553

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +++D     D M      P V  Y  LI    +  + D+A    ++M     +PN  TY
Sbjct: 554 GKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTY 613

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              + A    G+L     +V  +   G  LD F Y  L+ A+
Sbjct: 614 TAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAY 655



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 2/149 (1%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
             V++ +     +    L+ +LI G  K  +  D      +M   G  P+   +N L+  
Sbjct: 490 HQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDG 549

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    + A+ + + M K++ KP   TY  L+         D     +  M ++G   +
Sbjct: 550 LRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPN 609

Query: 181 KFCYAGLITAHT--NKIPRADDTATKIIE 207
              Y   I A+    ++  A++   KI E
Sbjct: 610 VVTYTAFIKAYCRQGRLLEAEEMVVKIKE 638



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N+  YN ++     ++       + + M  + + P    +++LI G  K   +   +   
Sbjct: 399 NSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLH 458

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M  +GF+PD   +   I    K    +QA ++FE +K+   + N   Y  L++    A
Sbjct: 459 HLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKA 518

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
            +    + + + M   G      C+   IT
Sbjct: 519 EKFSDAHLLFKRMLFEG------CFPNSIT 542



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 18/184 (9%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFL----------LRDVYDDMML 69
           R   + S  +   AR  +  N   ++    S+TS  R F+          L  ++ DM+ 
Sbjct: 126 RNSMIKSCVSSHEAR--FVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLN 183

Query: 70  DGVQPTRDLFHSLIVGTMK-GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
           DGV+P    F++++    K G+ +    +F   MK  GF  D   Y  LI   G CK  +
Sbjct: 184 DGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKF-GFCCDSFTYTSLIL--GYCKIHE 240

Query: 129 --QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
              A ++FE M +     N  +Y  L++     G++D    +   M   G   D   Y  
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300

Query: 187 LITA 190
           L+ A
Sbjct: 301 LVAA 304



 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 131/333 (39%), Gaps = 21/333 (6%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           F  + +  + F   V  YN L  V  +    D+   +F++M    V+PN  ++  ++NA 
Sbjct: 141 FVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAH 200

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
              G +    A    +   G   D F Y  LI  +  KI    D A K+ E++ Q +G  
Sbjct: 201 CKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYC-KIHELGD-AYKVFEIMPQ-EGCL 257

Query: 217 SVETSGNNAENEMMGVSK----EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
             E S  N  +    V K     EL+      +  +  G    + T   +    C   K+
Sbjct: 258 RNEVSYTNLIHGFCEVGKIDEALELF------FQMKEDGCFPDVPTYTVLVAAFCEVGKE 311

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
            +A++   EM++   + P+VY     I  +   G +D G ++    +          +  
Sbjct: 312 TEALKFFEEMVENGIE-PNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNA 370

Query: 333 LVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD 391
           L++    GY  +G M+ A   L +M    +  + R  ++L+     +KS     A  + +
Sbjct: 371 LID----GYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMA--LLN 424

Query: 392 LMQARKITPSLPAVEAYYNGLKDREVPADDPRL 424
            M   K++P+L       +GL    V     RL
Sbjct: 425 KMYENKLSPNLVTYNTLIHGLCKARVVDSAWRL 457


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y+T+V +L       +  +++ + M +G  P   ++ ++I G  +  RL+D     
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK  GF  D   YN LI+   + K   +A  + +EMK+  ++P+  TY  LL+    A
Sbjct: 377 SSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKA 436

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           G    V  ++  M   G       +  L+  +  K+ + D+ A +I+  +++S
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSVITFGTLVHGYC-KVGKIDE-ALRILRSMDES 487



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++       F  + ++   M+ DG QP+   F +L+ G  K  ++ +       M 
Sbjct: 426 YNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD 485

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +G  P+  +YN LI    K  + D AI +F+EMK+  V  N  T+  LL
Sbjct: 486 ESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALL 535



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 4/160 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E     ++ +A  Y T+++ LT   R      +   M   G +     ++ LI G  +  
Sbjct: 343 EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKK 402

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI--RIFEEMKKYEVKPNGQT 148
           RL + +    +MK  G  PDV  YN L+S  G CK  D A    +  +M     +P+  T
Sbjct: 403 RLHEAYELLQEMKEVGIRPDVCTYNTLLS--GSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +  L++     G++D    I+R M  +G   +   Y  LI
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLI 500



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 5/170 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     ++R     ++  +M   G++P    +++L+ G+ K            +M 
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P V  +  L+    K    D+A+RI   M +  + PN   Y  L++     G +D
Sbjct: 451 DDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVD 510

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
               +  +M       +   +  L+    +K     +   K  EL++Q +
Sbjct: 511 LAIELFDEMKEKSVPANVTTFNALLKGLRDK-----NMPEKAFELMDQMR 555



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           +N+++ +L   R    +  +Y  M     V+P    +  L+ G  K  R+ D     D M
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGM 198

Query: 103 KANGF--LPDVAVYNYLISVCGKCKNSD-QAIRIFEEMKKYEV---KPNGQTYVCLLNAC 156
                   PDV   N ++   G CK+   Q    F E +   V    PN  TY CL++A 
Sbjct: 199 SRQDLDIRPDVVTLNTVVD--GLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAF 256

Query: 157 AAAGQLDPVYAIVRDMTAAG 176
              G +   Y +V  M   G
Sbjct: 257 CRVGNISMAYELVEKMENEG 276



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 133/390 (34%), Gaps = 93/390 (23%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ--MKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           ++P     ++++ G  K  R+Q+   F +Q     +G  P+   YN LI    +  N   
Sbjct: 205 IRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISM 264

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD---MTAAGAGLDKFCYAG 186
           A  + E+M+   V  N  T   ++     AG+        R+   +   G G +   Y+ 
Sbjct: 265 AYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG-NAVTYST 323

Query: 187 LITA--HTNKIPRADDTATKIIELVEQ--SKGWS----------SVETSGNNAEN--EMM 230
           L+ A  HTN +  A       +EL  +  S+G S          S  T     E+   M 
Sbjct: 324 LVGALLHTNNVGMA-------MELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376

Query: 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV----------------- 273
              KE  + L T  Y     GF  +     H A+    E+K+V                 
Sbjct: 377 SSMKEAGFKLDTKAYNILIAGFCRK--KRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 274 -----QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
                 A++ LL  +  D   P V      +  Y   G ID   ++      S   P   
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANY 388
           +Y TL++                          FL  R   DL              A  
Sbjct: 495 IYNTLID--------------------------FLCKRGDVDL--------------AIE 514

Query: 389 IWDLMQARKITPSLPAVEAYYNGLKDREVP 418
           ++D M+ + +  ++    A   GL+D+ +P
Sbjct: 515 LFDEMKEKSVPANVTTFNALLKGLRDKNMP 544


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y+T+V +L       +  +++ + M +G  P   ++ ++I G  +  RL+D     
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK  GF  D   YN LI+   + K   +A  + +EMK+  ++P+  TY  LL+    A
Sbjct: 377 SSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKA 436

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           G    V  ++  M   G       +  L+  +  K+ + D+ A +I+  +++S
Sbjct: 437 GDFAAVDELLGKMIDDGCQPSVITFGTLVHGYC-KVGKIDE-ALRILRSMDES 487



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++       F  + ++   M+ DG QP+   F +L+ G  K  ++ +       M 
Sbjct: 426 YNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD 485

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            +G  P+  +YN LI    K  + D AI +F+EMK+  V  N  T+  LL  
Sbjct: 486 ESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 4/160 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E     ++ +A  Y T+++ LT   R      +   M   G +     ++ LI G  +  
Sbjct: 343 EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKK 402

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI--RIFEEMKKYEVKPNGQT 148
           RL + +    +MK  G  PDV  YN L+S  G CK  D A    +  +M     +P+  T
Sbjct: 403 RLHEAYELLQEMKEVGIRPDVCTYNTLLS--GSCKAGDFAAVDELLGKMIDDGCQPSVIT 460

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +  L++     G++D    I+R M  +G   +   Y  LI
Sbjct: 461 FGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLI 500



 Score = 44.7 bits (104), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 5/170 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     ++R     ++  +M   G++P    +++L+ G+ K            +M 
Sbjct: 391 YNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMI 450

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P V  +  L+    K    D+A+RI   M +  + PN   Y  L++     G +D
Sbjct: 451 DDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVD 510

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
               +  +M       +   +  L+    +K     +   K  EL++Q +
Sbjct: 511 LAIELFDEMKEKSVPANVTTFNALLKGLRDK-----NMPEKAFELMDQMR 555



 Score = 38.5 bits (88), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 133/390 (34%), Gaps = 93/390 (23%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ--MKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           ++P     ++++ G  K  R+Q+   F +Q     +G  P+   YN LI    +  N   
Sbjct: 205 IRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISM 264

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD---MTAAGAGLDKFCYAG 186
           A  + E+M+   V  N  T   ++     AG+        R+   +   G G +   Y+ 
Sbjct: 265 AYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKG-NAVTYST 323

Query: 187 LITA--HTNKIPRADDTATKIIELVEQ--SKGWS----------SVETSGNNAEN--EMM 230
           L+ A  HTN +  A       +EL  +  S+G S          S  T     E+   M 
Sbjct: 324 LVGALLHTNNVGMA-------MELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376

Query: 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV----------------- 273
              KE  + L T  Y     GF  +     H A+    E+K+V                 
Sbjct: 377 SSMKEAGFKLDTKAYNILIAGFCRK--KRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 274 -----QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
                 A++ LL  +  D   P V      +  Y   G ID   ++      S   P   
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANY 388
           +Y TL++                          FL  R   DL              A  
Sbjct: 495 IYNTLID--------------------------FLCKRGDVDL--------------AIE 514

Query: 389 IWDLMQARKITPSLPAVEAYYNGLKDREVP 418
           ++D M+ + +  ++    A   GL+D+ +P
Sbjct: 515 LFDEMKEKSVPANVTTFNALLKGLRDKNMP 544



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           +N+++ +L   R    +  +Y  M     V+P    +  L+ G  K  R+ D     D M
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGM 198

Query: 103 KANGF--LPDVAVYNYLISVCGKCKNSD-QAIRIFEEMKKYEV---KPNGQTYVCLLNAC 156
                   PDV   N ++   G CK+   Q    F E +   V    PN  TY CL++A 
Sbjct: 199 SRQDLDIRPDVVTLNTVVD--GLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAF 256

Query: 157 AAAGQLDPVYAIVRDMTAAG 176
              G +   Y +V  M   G
Sbjct: 257 CRVGNISMAYELVEKMENEG 276


>gi|224576657|gb|ACN57002.1| At1g03560-like protein [Capsella grandiflora]
          Length = 207

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     +G+      + SLI G  K  R+ +     ++M 
Sbjct: 60  YSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMS 119

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K    D+A+ +F+ M++ E
Sbjct: 120 EKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEE 157


>gi|224576653|gb|ACN57000.1| At1g03560-like protein [Capsella grandiflora]
          Length = 207

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     +G+      + SLI G  K  R+ +     ++M 
Sbjct: 60  YSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMS 119

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K    D+A+ +F+ M++ E
Sbjct: 120 EKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEE 157


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 76/159 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + Y +    YNT+++ L   +      ++Y  +M +G  PT   +  L+ G +K 
Sbjct: 825 EEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKD 884

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++D     D+M   G  P+ A+YN L++      ++++   +FE M +  + P+ ++Y
Sbjct: 885 GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 944

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +++   A G+L+   +  + +T  G   D   Y  LI
Sbjct: 945 TVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLI 983



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 1/175 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y   V +L    R     DV+D+M   G+ P +  ++SLI G +K  R     
Sbjct: 342 YNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRAL 401

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + M  +G  P+   +   I+  GK   S +A++ +E MK   + P+      +L   
Sbjct: 402 ELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGL 461

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           A  G+L     +  ++ A G   D   Y  +I    +K   AD+      E++E 
Sbjct: 462 AKTGRLGMAKRVFHELKAMGISPDNITYTMMIKC-CSKASNADEAMKIFAEMIEN 515



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 117/306 (38%), Gaps = 16/306 (5%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L  +    +  +++ +M   G  P    +H ++    K  R++D    +++M 
Sbjct: 769  YNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMH 828

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              G+      YN +IS   K K  D+AI ++ ++      P   TY  LL+     G ++
Sbjct: 829  NKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIE 888

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               A+  +M   G   +   Y  L+  +     R      K+ EL E      S+   G 
Sbjct: 889  DAEALFDEMLECGCEPNCAIYNILLNGY-----RIAGDTEKVCELFE------SMVEQGM 937

Query: 224  NAENEMMGVSKEEL-----YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
            N + +   V  + L      N   + +       L   L  Y++  H   +   ++   +
Sbjct: 938  NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 997

Query: 279  LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
            L   ++K   +P++Y     I     +G      K++E+ +     P    Y  L+ G  
Sbjct: 998  LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYS 1057

Query: 339  FGYTPK 344
               +P+
Sbjct: 1058 VSGSPE 1063



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 63/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN ++  L          DVY  M  DGV PT   +  L++   K    +      
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+A G  P+V  Y   I V G+    ++A RI  +M++   KP+  T   L+     A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L     +   M A+    D+  Y  L+
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLL 318



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            Y  V+ +L +  R       +  +   G++P    ++ LI G  K  RL++     + M+
Sbjct: 944  YTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDME 1003

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              G  P++  YN LI   GK   + +A +++EE+     KPN  TY  L+   + +G  +
Sbjct: 1004 KKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPE 1063

Query: 164  PVYAIVRDMTAAGA 177
              +A    M   G 
Sbjct: 1064 NAFAAYGRMIVGGC 1077



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 56/130 (43%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L    R  + + V+ ++   G+ P    +  +I    K S   +      +M  
Sbjct: 455 NAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIE 514

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N   PDV   N LI +  K    ++A +IF E+K+  ++P   TY  LL      G++  
Sbjct: 515 NRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKE 574

Query: 165 VYAIVRDMTA 174
           V  ++  M +
Sbjct: 575 VMQLLEGMNS 584



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASE--------YNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           G  +F+  +G +  A   Y   A++        Y+ ++ +   +R    +  +  +M   
Sbjct: 176 GLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEAR 235

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV+P    +   I    +  RL++ +    +M+  G  PDV     LI +         A
Sbjct: 236 GVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADA 295

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG---------AGLDK 181
             +F +MK  + KP+  TY+ LL+ C  +G    V  I   + A G         A +D 
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 182 FCYAGLI 188
            C  G +
Sbjct: 356 LCQVGRV 362



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 150/369 (40%), Gaps = 23/369 (6%)

Query: 45  NTVVTS-LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRLQDTFFFRDQ 101
           NTV+   L    R    +DV+  M     +P R  + +L+   G    SR     +  + 
Sbjct: 279 NTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIW--NA 336

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +KA+G+  +V  Y   +    +    D+A+ +F+EMK+  + P   +Y  L++    A +
Sbjct: 337 LKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADR 396

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
            +    +   M   G   + + +   I  H          A K  EL+ +SKG      +
Sbjct: 397 FNRALELFNHMNIHGPTPNGYTHVLFINYHGKS--GESLKALKRYELM-KSKGIVPDVVA 453

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLL 280
           GN     + G++K     +    +   +   +S     Y +    C++  +  +AM+   
Sbjct: 454 GNAV---LYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFA 510

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMF 339
           EM++ +R +PDV  +   I     +G  +   K+F +       P    Y TL+ G    
Sbjct: 511 EMIE-NRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGRE 569

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
           G   + MQL    L  MNS +    P + +   ++    K+G     NY  D++ +  + 
Sbjct: 570 GKVKEVMQL----LEGMNSNS--FPPNIITYNTVLDCLCKNG---EVNYALDMLYSMTMN 620

Query: 400 PSLPAVEAY 408
             +P + +Y
Sbjct: 621 GCMPDLSSY 629



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 49/111 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L    R      +Y+DM   G+ P    ++SLI+   K  +  +     +++ 
Sbjct: 979  YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELL 1038

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            A G+ P+V  YN LI       + + A   +  M     +PN  TY+ L N
Sbjct: 1039 AKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPN 1089



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 149/370 (40%), Gaps = 23/370 (6%)

Query: 41   ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP----TRDLFHSLIVGTMKGSRLQDTF 96
            A +Y TV T L S  R  L+++    +    +QP     R   HSL+ G +K    + + 
Sbjct: 657  APDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSI 716

Query: 97   FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE---VKPNGQTYVCLL 153
             F + + ++G L D    + +I     CK+  +A+   E +KK+E   V     +Y  L+
Sbjct: 717  EFAENIASSGLLLDDLFLSPIIR--HFCKHK-EALAAHELVKKFENLGVSLKTGSYNALI 773

Query: 154  NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                    +D    +  +M   G   D+F Y  LI     K  R +D   KI E +  +K
Sbjct: 774  CGLVDEDLIDIAEELFSEMKRLGCDPDEFTYH-LILDAMGKSMRIEDM-LKIQEEM-HNK 830

Query: 214  GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
            G+ S   + N     + G+ K ++ +     Y        S     Y        +  ++
Sbjct: 831  GYKSTYVTYNTI---ISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNI 887

Query: 274  QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
            +  E L + + +    P+  I    +  Y  +GD +   ++FE  +     P  + Y  +
Sbjct: 888  EDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVV 947

Query: 334  VEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
            ++     G    G+   +  L +M      L P + +  LL+    KSG    A  +++ 
Sbjct: 948  IDTLCADGRLNDGLSYFKQ-LTDMG-----LEPDLITYNLLIHGLGKSGRLEEALSLYND 1001

Query: 393  MQARKITPSL 402
            M+ + I P+L
Sbjct: 1002 MEKKGIAPNL 1011



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 100/294 (34%), Gaps = 16/294 (5%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   Y   +  L    R      +   M  +G +P       LI       
Sbjct: 231 EMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAG 290

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL D      +MKA+   PD   Y  L+  CG   +S     I+  +K      N  +Y 
Sbjct: 291 RLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYT 350

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             ++A    G++D    +  +M   G    ++ Y  LI+          D   + +EL  
Sbjct: 351 AAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKA-----DRFNRALELFN 405

Query: 211 QSKGWSSVETSGNNAENEMM-----GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                 ++     N    ++     G S E L  L   E +  +G  +   +   +   +
Sbjct: 406 H----MNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLY 459

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
             A+   +   + +   LK    SPD       I+C   + + D   K+F + I
Sbjct: 460 GLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMI 513


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 76/159 (47%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + Y +    YNT+++ L   +      ++Y  +M +G  PT   +  L+ G +K 
Sbjct: 825 EEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKD 884

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             ++D     D+M   G  P+ A+YN L++      ++++   +FE M +  + P+ ++Y
Sbjct: 885 GNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSY 944

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +++   A G+L+   +  + +T  G   D   Y  LI
Sbjct: 945 TVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLI 983



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 1/175 (0%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y +N   Y   V +L    R     DV+D+M   G+ P +  ++SLI G +K  R     
Sbjct: 342 YNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRAL 401

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              + M  +G  P+   +   I+  GK   S +A++ +E MK   + P+      +L   
Sbjct: 402 ELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGL 461

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           A  G+L     +  ++ A G   D   Y  +I    +K   AD+      E++E 
Sbjct: 462 AKTGRLGMAKRVFHELKAMGISPDNITYTMMIKC-CSKASNADEAMKIFAEMIEN 515



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 117/306 (38%), Gaps = 16/306 (5%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L  +    +  +++ +M   G  P    +H ++    K  R++D    +++M 
Sbjct: 769  YNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMH 828

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              G+      YN +IS   K K  D+AI ++ ++      P   TY  LL+     G ++
Sbjct: 829  NKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIE 888

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               A+  +M   G   +   Y  L+  +     R      K+ EL E      S+   G 
Sbjct: 889  DAEALFDEMLECGCEPNCAIYNILLNGY-----RIAGDTEKVCELFE------SMVEQGM 937

Query: 224  NAENEMMGVSKEEL-----YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
            N + +   V  + L      N   + +       L   L  Y++  H   +   ++   +
Sbjct: 938  NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALS 997

Query: 279  LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338
            L   ++K   +P++Y     I     +G      K++E+ +     P    Y  L+ G  
Sbjct: 998  LYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYS 1057

Query: 339  FGYTPK 344
               +P+
Sbjct: 1058 VSGSPE 1063



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 63/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN ++  L          DVY  M  DGV PT   +  L++   K    +      
Sbjct: 170 NAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLL 229

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+A G  P+V  Y   I V G+    ++A RI  +M++   KP+  T   L+     A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L     +   M A+    D+  Y  L+
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLL 318



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            Y  V+ +L +  R       +  +   G++P    ++ LI G  K  RL++     + M+
Sbjct: 944  YTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDME 1003

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              G  P++  YN LI   GK   + +A +++EE+     KPN  TY  L+   + +G  +
Sbjct: 1004 KKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPE 1063

Query: 164  PVYAIVRDMTAAGA 177
              +A    M   G 
Sbjct: 1064 NAFAAYGRMIVGGC 1077



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 56/130 (43%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L    R  + + V+ ++   G+ P    +  +I    K S   +      +M  
Sbjct: 455 NAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIE 514

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           N   PDV   N LI +  K    ++A +IF E+K+  ++P   TY  LL      G++  
Sbjct: 515 NRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKE 574

Query: 165 VYAIVRDMTA 174
           V  ++  M +
Sbjct: 575 VMQLLEGMNS 584



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 17/187 (9%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASE--------YNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           G  +F+  +G +  A   Y   A++        Y+ ++ +   +R    +  +  +M   
Sbjct: 176 GLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEAR 235

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV+P    +   I    +  RL++ +    +M+  G  PDV     LI +         A
Sbjct: 236 GVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADA 295

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG---------AGLDK 181
             +F +MK  + KP+  TY+ LL+ C  +G    V  I   + A G         A +D 
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 182 FCYAGLI 188
            C  G +
Sbjct: 356 LCQVGRV 362



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 150/369 (40%), Gaps = 23/369 (6%)

Query: 45  NTVVTS-LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRLQDTFFFRDQ 101
           NTV+   L    R    +DV+  M     +P R  + +L+   G    SR     +  + 
Sbjct: 279 NTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIW--NA 336

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +KA+G+  +V  Y   +    +    D+A+ +F+EMK+  + P   +Y  L++    A +
Sbjct: 337 LKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADR 396

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
            +    +   M   G   + + +   I  H          A K  EL+ +SKG      +
Sbjct: 397 FNRALELFNHMNIHGPTPNGYTHVLFINYHGKS--GESLKALKRYELM-KSKGIVPDVVA 453

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLL 280
           GN     + G++K     +    +   +   +S     Y +    C++  +  +AM+   
Sbjct: 454 GNAV---LYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFA 510

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMF 339
           EM++ +R +PDV  +   I     +G  +   K+F +       P    Y TL+ G    
Sbjct: 511 EMIE-NRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGRE 569

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
           G   + MQL    L  MNS +    P + +   ++    K+G     NY  D++ +  + 
Sbjct: 570 GKVKEVMQL----LEGMNSNS--FPPNIITYNTVLDCLCKNG---EVNYALDMLYSMTMN 620

Query: 400 PSLPAVEAY 408
             +P + +Y
Sbjct: 621 GCMPDLSSY 629



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 49/111 (44%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++  L    R      +Y+DM   G+ P    ++SLI+   K  +  +     +++ 
Sbjct: 979  YNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELL 1038

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            A G+ P+V  YN LI       + + A   +  M     +PN  TY+ L N
Sbjct: 1039 AKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQLPN 1089



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 17/367 (4%)

Query: 41   ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP----TRDLFHSLIVGTMKGSRLQDTF 96
            A +Y TV T L S  R  L+++    +    +QP     R   HSL+ G +K    + + 
Sbjct: 657  APDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSI 716

Query: 97   FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             F + + ++G L D    + +I    K K +  A  + ++ +   V     +Y  L+   
Sbjct: 717  EFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGL 776

Query: 157  AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
                 +D    +  +M   G   D+F Y  LI     K  R +D   KI E +  +KG+ 
Sbjct: 777  VDEDLIDIAEELFSEMKRLGCDPDEFTYH-LILDAMGKSMRIEDM-LKIQEEM-HNKGYK 833

Query: 217  SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
            S   + N     + G+ K ++ +     Y        S     Y        +  +++  
Sbjct: 834  STYVTYNTI---ISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDA 890

Query: 277  ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            E L + + +    P+  I    +  Y  +GD +   ++FE  +     P  + Y  +++ 
Sbjct: 891  EALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDT 950

Query: 337  -AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
                G    G+   +  L +M      L P + +  LL+    KSG    A  +++ M+ 
Sbjct: 951  LCADGRLNDGLSYFKQ-LTDMG-----LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEK 1004

Query: 396  RKITPSL 402
            + I P+L
Sbjct: 1005 KGIAPNL 1011



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 100/294 (34%), Gaps = 16/294 (5%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   Y   +  L    R      +   M  +G +P       LI       
Sbjct: 231 EMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAG 290

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL D      +MKA+   PD   Y  L+  CG   +S     I+  +K      N  +Y 
Sbjct: 291 RLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYT 350

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             ++A    G++D    +  +M   G    ++ Y  LI+          D   + +EL  
Sbjct: 351 AAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKA-----DRFNRALELFN 405

Query: 211 QSKGWSSVETSGNNAENEMM-----GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                 ++     N    ++     G S E L  L   E +  +G  +   +   +   +
Sbjct: 406 H----MNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLY 459

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
             A+   +   + +   LK    SPD       I+C   + + D   K+F + I
Sbjct: 460 GLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMI 513


>gi|341605737|gb|AEK82971.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605739|gb|AEK82972.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605741|gb|AEK82973.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRXNGXAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 188



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 4   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 64  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNGXAINSM 123

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 124 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 151


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M  +G+QP    +++L+ G +K   L+D  F   +M+ +G LP+   Y+ LI   G
Sbjct: 328 IFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYG 387

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
             +  + A  + +EM+   V+PN   +  +L +    G+    + ++R+M  +G   D+ 
Sbjct: 388 NAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRI 447

Query: 183 CYAGLI 188
            Y  LI
Sbjct: 448 FYNVLI 453



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 155/414 (37%), Gaps = 66/414 (15%)

Query: 37  YANNASEYNTVVTSLTSQRRF--FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           Y ++   Y+ ++ SL    R    +L+ +Y ++  D ++    L++ +IVG  K   L  
Sbjct: 230 YPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDK 289

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
              F   ++ +G     A    +I   G C  +++A  IFEEM+   ++P  + Y  LL 
Sbjct: 290 ALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLR 349

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               AG L     +V +M  +G   ++  Y+ LI A+ N                  ++ 
Sbjct: 350 GYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGN------------------AER 391

Query: 215 WSSVETSGNNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
           W S              V KE E  N+    YV  R     R    +   F    E++D 
Sbjct: 392 WESARI-----------VLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDS 440

Query: 274 -----------------------QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
                                   AM T   ML +  + PD       + C+  +G  D 
Sbjct: 441 GVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIE-PDTITWNTLVDCHCKAGKHDR 499

Query: 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSD 370
             ++FE+ +     P    +  ++    FG   +   + ++ L NM S+ +   P   + 
Sbjct: 500 AEELFEEMMEKGYLPCNTTFNIMINS--FGDQERWDDV-KNLLTNMRSQGLL--PNAVTY 554

Query: 371 LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYN-----GLKDREVPA 419
             L+    KSG +  A    D M+A  + PS     A  N     GL D+ V A
Sbjct: 555 TTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSA 608



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 120/284 (42%), Gaps = 18/284 (6%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           Q+ F +LR++ D     GV+P R  ++ LI    K + L       D+M + G  PD   
Sbjct: 428 QKTFQVLREMEDS----GVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTIT 483

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
           +N L+    K    D+A  +FEEM +    P   T+  ++N+     + D V  ++ +M 
Sbjct: 484 WNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMR 543

Query: 174 AAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK--GWSSVETSGNNAEN--EM 229
           + G   +   Y  LI  +  K  R DD     IE ++  K  G     T  N   N    
Sbjct: 544 SQGLLPNAVTYTTLIDIY-GKSGRFDDA----IECLDDMKAAGLKPSSTMYNALLNAYAQ 598

Query: 230 MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKS 289
            G+S + +    +A +  R  G    LL +  +      + +DV+A   +L+ +K++   
Sbjct: 599 RGLSDQAV----SAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAF-VVLQYMKENDLK 653

Query: 290 PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           PDV      ++  +     D    V+E+ I S   P  +  A L
Sbjct: 654 PDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKARAML 697



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 4/162 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            G L    FV S    E  R     N   Y+ ++ +  +  R+   R V  +M    VQP
Sbjct: 354 AGLLRDAEFVVS----EMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQP 409

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
              +F  ++         Q TF    +M+ +G  PD   YN LI   GK    D A+  F
Sbjct: 410 NAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATF 469

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + M    ++P+  T+  L++    AG+ D    +  +M   G
Sbjct: 470 DRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKG 511



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 2/152 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFF 98
           NA  Y T++       RF    +  DDM   G++P+  ++++L+     +G   Q    F
Sbjct: 550 NAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAF 609

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
              M+ +G  P +   N LI+  GK +   +A  + + MK+ ++KP+  TY  L+ A   
Sbjct: 610 W-AMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALIL 668

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             + D V ++  +M  +G   D+   A L +A
Sbjct: 669 VEKFDKVPSVYEEMILSGCTPDRKARAMLRSA 700



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 69/161 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + Y    + +N ++ S   Q R+  ++++  +M   G+ P    + +LI    K 
Sbjct: 505 EEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKS 564

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  D     D MKA G  P   +YN L++   +   SDQA+  F  M+   +KP+    
Sbjct: 565 GRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLAL 624

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+NA     +    + +++ M       D   Y  L+ A
Sbjct: 625 NSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKA 665


>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
 gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
 gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
 gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L     F L   VY+D   DG+      F  L+ G  K  R+++      +M+
Sbjct: 231 YNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMR 290

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            N   PDV  Y  +I       N D ++R+++EM++ E+KP+   Y  L+      G+++
Sbjct: 291 ENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVE 350

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
             Y +  +M      +D+  Y  LI
Sbjct: 351 RGYELFMEMKGKQILIDREIYRVLI 375



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ Y ++ + YN     L     F     + + M   G  P+   F  LI       R  
Sbjct: 151 QKGYKHDFAAYNAFAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRRGL 210

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
             ++  ++MK  GF P V +YN ++    K    D A+ ++E+ K+  +     T++ L+
Sbjct: 211 RVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILV 270

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                AG+++ +  I++ M       D F Y  +I
Sbjct: 271 KGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMI 305



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 60/332 (18%), Positives = 123/332 (37%), Gaps = 47/332 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R     +   Y T+V  L    R     +++ +M    +   R+++  LI G +  
Sbjct: 322 DEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVAD 381

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +++      + +  +G++ D+ +YN +I         D+A ++F+   + E++P+ +T 
Sbjct: 382 GKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAIEEELEPDFETL 441

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC--YAGLITAHTNKIPRADDTATKIIE 207
             ++ A     +L     ++  +   G  +  +   +  L+ A   K   A D     + 
Sbjct: 442 SPIMVAYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKLLCADEEKNAMALD-----VF 496

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            + ++KG  SV                                       +VY++   A 
Sbjct: 497 YILKTKGHGSV---------------------------------------SVYNILMEAL 517

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            ++ D+Q   +L   ++K    PD       I C++  GD+       E  I     P  
Sbjct: 518 YKMGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFHEKIIEMSCVPSI 577

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNS 358
             Y +L +G    G     M L ++ L N+ S
Sbjct: 578 AAYLSLTKGLCQIGEIDAVMLLVRECLGNVES 609


>gi|399107192|gb|AFP20360.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 190


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG-TMK 88
           EE   +  A +A  YN ++     + +      +++ M+  G++ T   + SLI   +MK
Sbjct: 278 EEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMK 337

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           G   +    F D ++  G  PD+ +YN LI+      + D+A  I  EM+K  + P+  T
Sbjct: 338 GMVQETDRLFNDAVR-RGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVT 396

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Y  L+      G+LD    ++ +MT  G   D   Y  LI+ ++ K
Sbjct: 397 YNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMK 442



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 4/154 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  YN ++     Q    +      +M+  GV  T   ++  +       R  +     
Sbjct: 218 NAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALV 277

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQ--AIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++M   G  PD   YN LI+  G CK   +  A+++FE M    ++    TY  L++A +
Sbjct: 278 EEMGEKGLAPDAFTYNILIN--GYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALS 335

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             G +     +  D    G   D F Y  LI +H
Sbjct: 336 MKGMVQETDRLFNDAVRRGIRPDLFMYNALINSH 369



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 1/166 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMK 88
           E   R   A +   Y TV++      +      V+D+M+ +G V+P   ++++LI G   
Sbjct: 172 EMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCD 231

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              L+    +R +M   G    VA YN  +        + +A  + EEM +  + P+  T
Sbjct: 232 QGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFT 291

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Y  L+N     G+      +   M   G       Y  LI A + K
Sbjct: 292 YNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMK 337



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 64/164 (39%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           RR    +   YN ++ S  +        ++  +M    + P    +++L+ G     RL 
Sbjct: 352 RRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLD 411

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     ++M   G  PD+  YN LIS      +   A+++ +EM      P   TY  ++
Sbjct: 412 EARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMI 471

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
                 GQ      +V++M   G   D   Y  LI   T +  R
Sbjct: 472 KGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDER 515



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 62/145 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++ +L+ +        +++D +  G++P   ++++LI     G  +   F    +M+
Sbjct: 327 YTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEME 386

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                PD   YN L+         D+A  + EEM K  ++P+  +Y  L++  +  G + 
Sbjct: 387 KKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIK 446

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +  +M   G       Y  +I
Sbjct: 447 DAVKVRDEMMGKGFNPTLLTYNAMI 471



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 126/344 (36%), Gaps = 17/344 (4%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
            P    ++++I G     R+Q      R+  +  G  PD   Y  +IS   K    + A 
Sbjct: 144 SPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDAT 203

Query: 132 RIFEEM-KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++F+EM  + +V+PN   Y  L+      G L+       +M   G  +    Y   +  
Sbjct: 204 KVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYN--LFV 261

Query: 191 HTNKIP-RADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
           HT  +  RA +    + E+ E  KG +    + N   N   G  KE         +    
Sbjct: 262 HTLFMEGRAAEAHALVEEMGE--KGLAPDAFTYNILIN---GYCKEGKEKKAMKMFEVMV 316

Query: 250 GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
           G  +   +  Y    HA +    VQ  + L     +    PD+++    I  +   GD+D
Sbjct: 317 GKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMD 376

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG 368
              ++  +       P    Y TL+ G  + G   +   L ++    M  R I   P + 
Sbjct: 377 RAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEE----MTKRGI--QPDLV 430

Query: 369 SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           S   L++     G    A  + D M  +   P+L    A   GL
Sbjct: 431 SYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGL 474



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R  +   + YN  V +L  + R      + ++M   G+ P    ++ LI G  K  
Sbjct: 244 EMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEG 303

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           + +      + M   G    V  Y  LI   S+ G  + +D   R+F +  +  ++P+  
Sbjct: 304 KEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETD---RLFNDAVRRGIRPDLF 360

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            Y  L+N+    G +D  + I+ +M       D   Y  L+
Sbjct: 361 MYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLM 401


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 131/315 (41%), Gaps = 26/315 (8%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R+   N   Y  +V ++  +R+    R + ++MM  G+ P+   +++LI G  +  
Sbjct: 344 EMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEG 403

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R++        M++N   P+   YN LI    K K+  +A+ +  +M + ++ P+  TY 
Sbjct: 404 RIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYN 463

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++    AG  D  Y ++  +   G   D++ Y+  I           DT  K   + E
Sbjct: 464 SLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFI-----------DTLCKSKRMEE 512

Query: 211 QSKGWSSVETSGNNAENEMM------GVSK----EELYNLPTAEYVHRRGGFLSRLLTVY 260
               ++S++  G  A NE+M      G  K    +E  +L   E +H     L    T  
Sbjct: 513 ACDLFNSLKEKGIKA-NEVMYTALIDGHCKAGKIDEAISL--LERMHSEDC-LPNSSTYN 568

Query: 261 HVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320
            + +  C E K VQ   +++E + K    P V      I   L  GD D+ ++VF   + 
Sbjct: 569 SLIYGVCKEGK-VQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVS 627

Query: 321 SEKFPPAELYATLVE 335
               P    Y   + 
Sbjct: 628 FGHKPDVYTYTAFIH 642



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+  + +L   +R     D+++ +   G++    ++ +LI G  K  ++ +     ++M 
Sbjct: 497 YSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMH 556

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +   LP+ + YN LI   G CK     + + + E M K  VKP   TY  L+      G 
Sbjct: 557 SEDCLPNSSTYNSLIY--GVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGD 614

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIE 207
            D    +   M + G   D + Y   I  +  +  +  A+    ++IE
Sbjct: 615 FDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIE 662



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    ++SLI G  K  ++Q+     + M   G  P VA Y  LI    +  + D A R+
Sbjct: 562 PNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRV 621

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           F +M  +  KP+  TY   ++    +G +     ++  M  AG   D   Y  LI+A+
Sbjct: 622 FNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAY 679



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/391 (18%), Positives = 146/391 (37%), Gaps = 66/391 (16%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V++ M   G +     + ++I G  +  R+ +      +M+ +   P V  Y  +I    
Sbjct: 271 VFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALF 330

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
               + + + +F EM++   +PN  TY  +++A     +LD    I+ +M   G      
Sbjct: 331 GNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVV 390

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM-GVSKEELYNLP 241
            Y  LI  +  +     + A +I+ L+E +    +  T      NE++ G SK       
Sbjct: 391 TYNALIRGYCEE--GRIEAALEILGLMESNNCRPNERTY-----NELICGFSKR------ 437

Query: 242 TAEYVHRRGGFLSRL--------LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD-- 291
             ++VH+    LS++        L  Y+   H   +     +   LL++LK++   PD  
Sbjct: 438 --KHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQW 495

Query: 292 VYIVMQNIRC---------------------------------YLHSGDIDNGHKVFEDY 318
            Y V  +  C                                 +  +G ID    + E  
Sbjct: 496 TYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERM 555

Query: 319 ICSEKFPPAELYATLVEGAMF-GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAG 377
              +  P +  Y +L+ G    G   +G+ + +      N   + + P + +  +L+   
Sbjct: 556 HSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVE------NMSKMGVKPTVATYTILIEEM 609

Query: 378 EKSGGYTTANYIWDLMQARKITPSLPAVEAY 408
            + G +  AN +++ M +    P +    A+
Sbjct: 610 LREGDFDHANRVFNQMVSFGHKPDVYTYTAF 640



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 10/134 (7%)

Query: 44  YNTVVTSLTSQRRFFL---LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           YN ++  L    RF +   ++ VY +M+ D + P     ++++    K   + +   +  
Sbjct: 182 YNELLMMLA---RFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVS 238

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           ++   G  PD   Y  LI   G C+N+D   A ++F  M     + N  +Y  +++    
Sbjct: 239 KIFQAGLSPDSFTYTSLI--LGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCE 296

Query: 159 AGQLDPVYAIVRDM 172
           AG++D   ++ + M
Sbjct: 297 AGRIDEGISLFKKM 310



 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 61/149 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N+S YN+++  +  + +      + ++M   GV+PT   +  LI   ++           
Sbjct: 563 NSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVF 622

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +QM + G  PDV  Y   I       N  +A  +   M +  V P+  TY  L++A    
Sbjct: 623 NQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERL 682

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G     + +++ M  AG       +  LI
Sbjct: 683 GLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 123/315 (39%), Gaps = 41/315 (13%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQA 130
           +P    ++ L+ G  + S+    F    ++  NG LPD   YN L+   G CK    + A
Sbjct: 402 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVD--GFCKEGQLNMA 459

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             IF  M    ++P+G T+  L++     G+L+    I+  M   G  LD+  +  LI  
Sbjct: 460 FNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDG 519

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGN-----------NAENEMMGVSKEELYN 239
           H  KI +A D       +VE ++  ++  T              N  N M+G  K   Y 
Sbjct: 520 HC-KIGKAKDVCFLFENMVE-NRCLTTAHTFNCFLDALGKDYKLNEANAMLG--KMMKYG 575

Query: 240 LPTAEYVHR-------RGG-------FLSRL--------LTVYHVAFHACAELKDVQAME 277
           L  +   H        R G        L R+        +  Y +  +       V+  E
Sbjct: 576 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 635

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
           T+L  +     SP+ +     ++ ++ +G +D   ++    + +   P + +Y+ L+ G 
Sbjct: 636 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 695

Query: 338 MFGYTPKGMQLAQDT 352
           +   T  G +    T
Sbjct: 696 VLSNTAIGARALSST 710



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 15/208 (7%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  +N  + +L    +      +   MM  G+ P+      LI G  +      +    +
Sbjct: 545 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 604

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           +MK  G  P+V  Y Y I + G C N   ++A  I   M  + V PN  TY  L+ A   
Sbjct: 605 RMKQAGCSPNV--YTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVK 662

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCY----AGLITAHTNKIPRADDTATKIIELVEQSKG 214
           AG+LD  + IV  M   G   +   Y    +G + ++T    RA  +   +      ++ 
Sbjct: 663 AGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDL-----DARS 717

Query: 215 WSSVETSGNNAENEM--MGVSKEELYNL 240
            SS E   N   NE+   GV  E+LYN 
Sbjct: 718 LSSEENDNNCLSNEIKKCGVPTEDLYNF 745



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M+ +    T   F+  +    K  +L +      +M   G +P V  +  LI   G
Sbjct: 532 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIE--G 589

Query: 123 KCKNSDQAI--RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C+  + A+  ++ E MK+    PN  TY  ++N     G+++    I+  M++ G   +
Sbjct: 590 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 649

Query: 181 KFCYAGLITAHTN--KIPRADDTATKIIE 207
            F YA L+ AH    ++ RA    + +++
Sbjct: 650 HFTYAVLVKAHVKAGRLDRAFQIVSTMVK 678



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 51/125 (40%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +  +P    +  LI G  +  RL++ F  + +M   G  P    Y  LI        +D+
Sbjct: 259 ENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDK 318

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+++ +EM      PN  TY  L++     G+++    + R M   G       +  LI 
Sbjct: 319 AMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALIN 378

Query: 190 AHTNK 194
            +  +
Sbjct: 379 GYCKE 383



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++  L      F+   VY  M+ +G       + +++    K   +Q    F  ++ 
Sbjct: 162 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 221

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAG 160
             GF  D  V   L  V   C+  D  +A R+FE+M K E  +PN  TY  L++    AG
Sbjct: 222 RLGFGLDTHVCTSL--VLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAG 279

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN------KIPRADDTATK 204
           +L+  + + ++M   G       Y  LI A  +       +   D+ ATK
Sbjct: 280 RLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 329



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 58/150 (38%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  ++  L    R      +   M+  G+      F +LI G  K  + +D  F  + M 
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 537

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            N  L     +N  +   GK    ++A  +  +M KY + P+  T+  L+     AG+  
Sbjct: 538 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 597

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               ++  M  AG   + + Y  +I    N
Sbjct: 598 LSLKMLERMKQAGCSPNVYTYTIIINGLCN 627



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           PT DL++ L+VG  K  R+ +       M  +G  PD A+ + +   C  CK  D  +  
Sbjct: 738 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCK-YDNCLEF 796

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            + +   +  P+  +Y  +++     G++     +V D+ 
Sbjct: 797 MKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLV 836


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 2/170 (1%)

Query: 40  NASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N   YN V+ +       F  +   +D+M  +GVQP R  F+SL+    +G   +     
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D+M       DV  YN L+    K    D A  I  +M    + PN  +Y  +++  A 
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           AG+ D    +  +M   G  LD+  Y  L++ +T K+ R+++    + E+
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYT-KVGRSEEALDILREM 470



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+TV+       RF    +++ +M   G+   R  +++L+    K  R ++     
Sbjct: 408 NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDIL 467

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M + G   DV  YN L+   GK    D+  ++F EMK+  V PN  TY  L++  +  
Sbjct: 468 REMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKG 527

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G       I R+  +AG   D   Y+ LI A
Sbjct: 528 GLYKEAMEIFREFKSAGLRADVVLYSALIDA 558



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 1/147 (0%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           + ++++L    +  + + +++     G   T   F +LI    +    ++     + MK 
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 105 NGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            G  P++  YN +I  CGK      Q  + F+EM++  V+P+  T+  LL  C+  G  +
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
               +  +MT      D F Y  L+ A
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDA 383



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R+++D+M    ++     +++L+    KG ++   F    QM     +P+V  Y+ +I  
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDG 418

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K    D+A+ +F EM+   +  +  +Y  LL+     G+ +    I+R+M + G   D
Sbjct: 419 FAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKD 478

Query: 181 KFCYAGLI 188
              Y  L+
Sbjct: 479 VVTYNALL 486


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  + +   YN ++ +   + +FF   ++YD+M+  G+ P    + S+I G  K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           +RL         M   G  P++  +N LI   CG  K  D  + +  EM +  +  +  T
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-KRIDDGMELLHEMTETGLVADTTT 432

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G L+    ++++M ++G   D      L+    +     D  A ++ ++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD--ALEMFKV 490

Query: 209 VEQSKGWSSVETSGNNAE--------------NEMMGVSKEELYNLPTAEYVHRRGGFLS 254
           +++SK         N  E              NE   +  EELY     E  HR  G + 
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE----EMPHR--GIVP 544

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             +T   +    C + +  +A +    M  K   SP+V      I  Y  +G +D+G ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 315 F 315
           F
Sbjct: 604 F 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M +  F P+V  +  LI+   K    D  + +F EM +  +  N  TY+ L+      
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G ++    I ++M ++G   D      ++T   +K
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK 664



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 163/385 (42%), Gaps = 23/385 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D MM DG+QPT+  + +++ G  K G  +      
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  RDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           R   + +  +P+V +Y+ +I S+C   ++SD A  +F EM++  + P+  TY  ++    
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE--LVEQSK 213
           ++G+      ++++M       D   Y  LI A     K   A++   +++   ++  + 
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
            +SS+   G   +N +   + E ++      Y+    G    L+T   +    C   +  
Sbjct: 362 TYSSM-IDGFCKQNRL--DAAEHMF------YLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             ME L EM +    + D       I  +   GD++    + ++ I S   P      TL
Sbjct: 413 DGMELLHEMTETGLVA-DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 334 VEGAMFGYTPKG----MQLAQDTLVNMNSRNIF--LSPRMGSDLLLVAAGEKSGGYTTAN 387
           ++G       K      ++ Q +  ++++ + F  + P + +  +L++     G +  A 
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            +++ M  R I P      +  +GL
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGL 556



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
            +GV+P    ++ LI G +   +  +     ++M   G +PD   Y+ +I   G CK S 
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID--GLCKQSR 561

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A ++F+ M      PN  T+  L+N    AG++D    +  +M   G   +   Y  
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 187 LITA 190
           LI  
Sbjct: 622 LICG 625



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 95/242 (39%), Gaps = 27/242 (11%)

Query: 106 GFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  PDV  +  L+   G C      +A+  F +M +   +PN  T+  L+N     G++ 
Sbjct: 144 GLHPDVVTFTTLLH--GLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 164 PVYAIVRDM---------TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
              A++  M            G  +D  C  G   +  N + + ++ +  I  +V  S  
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             S+   G +++ + +    +E              G    L T   +    C+  +   
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQE-------------KGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A + L EML++ + SPDV      I  ++  G      +++++ +     P    Y++++
Sbjct: 309 AEQLLQEMLER-KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367

Query: 335 EG 336
           +G
Sbjct: 368 DG 369


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++ +L   +      +V   M+  GV P    ++S++ G     + ++   F 
Sbjct: 115 NVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL 174

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+++G  PDV  YN L+    K     +A +IF+ M K  +KP+  TY  LL   A  
Sbjct: 175 KKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATK 234

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G L  ++ ++  M   G   + + ++ L+ A+  +
Sbjct: 235 GALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 269



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    R    R ++D M   G++P    + +L+ G      L +     D M 
Sbjct: 189 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMV 248

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+  V++ L+    K +  ++A+ +F +M++  + PN  TY  +++    +G+++
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
                   M   G   D   Y  LI
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLI 333



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 1/148 (0%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           VV+  T    FF   D+ D M+   + P    ++S+I    K   +         M  +G
Sbjct: 88  VVSYSTVINGFFKEGDL-DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 146

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
            +PD   YN ++          +AI   ++M+   V+P+  TY  L++     G+     
Sbjct: 147 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEAR 206

Query: 167 AIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            I   MT  G   D   Y  L+  +  K
Sbjct: 207 KIFDSMTKRGLKPDITTYGTLLQGYATK 234


>gi|399107212|gb|AFP20370.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMALFKRMEEEEG 190


>gi|341605761|gb|AEK82983.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 2/179 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +R +  N   Y TV+  L       +  DV+  M  +G +P    + ++I    K  
Sbjct: 188 EMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDR 247

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            + D   F  +M   G  P+V  YN ++         ++A R+F+EM   +V PN  T+ 
Sbjct: 248 LVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFT 307

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            L++     G +     +   MT  G   D   Y  L+  +   + R  + A K+ E++
Sbjct: 308 ILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYC--LQRLMNEAKKVFEIM 364



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    +    + S YN ++     QR     + V++ M+  G  P    ++ LI G  K 
Sbjct: 327 ETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKS 386

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +      +M      PD   Y+ L+    +     +A+ +F+EM  Y   PN  TY
Sbjct: 387 RRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTY 446

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
           V LL+     G LD    +++ M
Sbjct: 447 VILLDGFCKHGHLDEALKLLKSM 469



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 65/156 (41%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
            +N    N ++  L           V   M   G+ P    F++LI G     ++++   
Sbjct: 125 THNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVE 184

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             ++M   G  P+V  Y  +I+   K  N+  A+ +F++M++   KPN  TY  ++++  
Sbjct: 185 LFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC 244

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               ++     + +M   G   + F Y  ++    N
Sbjct: 245 KDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCN 280



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   YN++V    +  +      ++ +M+   V P    F  L+ G  K  
Sbjct: 258 EMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEG 317

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQT 148
            + +     + M   G  PD++ YN L+   G C  +  ++A ++FE M +    P   +
Sbjct: 318 MVSEARLVFETMTEKGVEPDISTYNALMD--GYCLQRLMNEAKKVFEIMIRKGCAPGAHS 375

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           Y  L+N    + ++D   +++ +M       D   Y+ L+
Sbjct: 376 YNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 415



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 4/161 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   R+  A  A  YN ++      RR    + +  +M    + P    + +L+ G  + 
Sbjct: 362 EIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQL 421

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            R ++      +M + G  P++  Y  L+   G CK+   D+A+++ + MK+ +++PN  
Sbjct: 422 GRPKEALNLFKEMCSYGPHPNLVTYVILLD--GFCKHGHLDEALKLLKSMKEKKLEPNIV 479

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            Y  L+     AG+L+    +   +   G   D   Y  +I
Sbjct: 480 HYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMI 520



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 62/135 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  +N ++  L ++ +     +++++M+  G +P    + ++I G  K           
Sbjct: 162 DAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVF 221

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+ NG  P+V  Y+ +I    K +  + A+    EM +  + PN  TY  +++     
Sbjct: 222 KKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNL 281

Query: 160 GQLDPVYAIVRDMTA 174
           GQL+    + ++M  
Sbjct: 282 GQLNEATRLFKEMVG 296



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 54/115 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++  +    +  + ++++  +  DG +P    +  +I G +K     + +   
Sbjct: 477 NIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLF 536

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            +M+ +GFLP+   YN +I    + ++S  AIR+ +EM       N  T+  LL+
Sbjct: 537 RKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 5/184 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T++ SL   R      +   +M+  G+ P    ++S++ G     +L +     
Sbjct: 232 NVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLF 291

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M     +P+   +  L+   G CK     +A  +FE M +  V+P+  TY  L++   
Sbjct: 292 KEMVGRDVMPNTVTFTILVD--GLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYC 349

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
               ++    +   M   G       Y  LI  +  K  R D+  + + E+  ++    +
Sbjct: 350 LQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYC-KSRRMDEAKSLLAEMYHKALNPDT 408

Query: 218 VETS 221
           V  S
Sbjct: 409 VTYS 412


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 123/295 (41%), Gaps = 11/295 (3%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           +D+M+  G+ PT   + SLI G          F   ++M A G  P+   +  +IS   +
Sbjct: 285 FDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCR 344

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
                +AIR+F EMK+ ++ P+  TY  ++     +G +   + ++ +M   G   D + 
Sbjct: 345 ANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYT 404

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYN--LP 241
           Y  LI+   + + R  +    + +L +     +++  S       + G  KE  +   + 
Sbjct: 405 YRPLISGLCS-VGRVSEAKEFVDDLHKDHHKLNNMCYSA-----LVHGYCKEGRFKDAVS 458

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
               +  RG  ++  L  Y +     A   D +A+  LL+ +      PD  I    I  
Sbjct: 459 ACRVMVERG--VAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDR 516

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVN 355
           +  +G++     +++  +     P    Y  L+ G    G   K   L+++TLV+
Sbjct: 517 HSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVS 571



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 62/158 (39%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +  + N   +  +++ L           ++ +M    + P+   ++ +I G  +  
Sbjct: 322 EMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSG 381

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            + + F   D+M   GF+PD   Y  LIS         +A    +++ K   K N   Y 
Sbjct: 382 NISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYS 441

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L++     G+     +  R M   G  +D  CYA LI
Sbjct: 442 ALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILI 479



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 51/109 (46%)

Query: 68  MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
           ML G   T   ++ LI G  +  ++++       M  N  LPD   Y+ +I    K  N 
Sbjct: 603 MLKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNL 662

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            +AI+++  M    +KP+   Y  L++ C  AG+L+  + +  +M   G
Sbjct: 663 QEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRG 711



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 57  FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
           F LL+++++     G++P   ++ ++I    K   L++ F   D M   G LP+V  Y  
Sbjct: 492 FGLLKEMHNH----GLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTA 547

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           LI+   K    D+A  + +E    +V PN  TY C L+     G ++
Sbjct: 548 LINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNME 594



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 26/173 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS----------------LIVGTM 87
           YN ++  L   RR +   ++ + +M  G++     ++                 L    +
Sbjct: 169 YNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHI 228

Query: 88  KGSRLQDTFFFRDQM-KANGFLP-------DVAVYNYLISVCGKCK--NSDQAIRIFEEM 137
             S L D+F  R +M  A GFL        +  VY Y   + G CK  N+  A   F+EM
Sbjct: 229 TYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEM 288

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
               + P   TY  L++     G+    + +  +MTA G   + + +  +I+ 
Sbjct: 289 IDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISG 341


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  + +   YN ++ +   + +FF   ++YD+M+  G+ P    + S+I G  K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           +RL         M   G  P++  +N LI   CG  K  D  + +  EM +  +  +  T
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-KRIDDGMELLHEMTETGLVADTTT 432

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G L+    ++++M ++G   D      L+    +     D  A ++ ++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD--ALEMFKV 490

Query: 209 VEQSKGWSSVETSGNNAE--------------NEMMGVSKEELYNLPTAEYVHRRGGFLS 254
           +++SK         N  E              NE   +  EELY     E  HR  G + 
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE----EMPHR--GIVP 544

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             +T   +    C + +  +A +    M  K   SP+V      I  Y  +G +D+G ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 315 F 315
           F
Sbjct: 604 F 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M +  F P+V  +  LI+   K    D  + +F EM +  +  N  TY+ L+      
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G ++    I ++M ++G   D      ++T   +K
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK 664



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 163/385 (42%), Gaps = 23/385 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D MM DG+QPT+  + +++ G  K G  +      
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  RDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           R   + +  +P+V +Y+ +I S+C   ++SD A  +F EM++  + P+  TY  ++    
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE--LVEQSK 213
           ++G+      ++++M       D   Y  LI A     K   A++   +++   ++  + 
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
            +SS+   G   +N +   + E ++      Y+    G    L+T   +    C   +  
Sbjct: 362 TYSSM-IDGFCKQNRL--DAAEHMF------YLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             ME L EM +    + D       I  +   GD++    + ++ I S   P      TL
Sbjct: 413 DGMELLHEMTETGLVA-DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 334 VEGAMFGYTPKG----MQLAQDTLVNMNSRNIF--LSPRMGSDLLLVAAGEKSGGYTTAN 387
           ++G       K      ++ Q +  ++++ + F  + P + +  +L++     G +  A 
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            +++ M  R I P      +  +GL
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGL 556



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
            +GV+P    ++ LI G +   +  +     ++M   G +PD   Y+ +I   G CK S 
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID--GLCKQSR 561

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A ++F+ M      PN  T+  L+N    AG++D    +  +M   G   +   Y  
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 187 LITA 190
           LI  
Sbjct: 622 LICG 625



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 97/242 (40%), Gaps = 27/242 (11%)

Query: 106 GFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  PDV  +N L+   G C      +A+ +F +M +   +PN  T+  L+N     G++ 
Sbjct: 144 GLHPDVVTFNTLLH--GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 164 PVYAIVRDM---------TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
              A++  M            G  +D  C  G   +  N + + ++ +  I  +V  S  
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             S+   G +++ + +    +E              G    L T   +    C+  +   
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQE-------------KGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A + L EML++ + SPDV      I  ++  G      +++++ +     P    Y++++
Sbjct: 309 AEQLLQEMLER-KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367

Query: 335 EG 336
           +G
Sbjct: 368 DG 369


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ S     R      V  +M    +     +++ LI G  +   + +      QM+
Sbjct: 672 YEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMR 731

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LPD+  Y   I+ C K  +  +A  I +EM+   +KPN +TY  L+N  A A   +
Sbjct: 732 KEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPE 791

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              +   +M  AG   DK  Y  L+T+
Sbjct: 792 KALSCFEEMKLAGFKPDKAVYHCLVTS 818



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 118/320 (36%), Gaps = 51/320 (15%)

Query: 30  EEYARRNYANNASEYNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           E++ +     +   YN ++T+        R   ++R     M  +  +PT   F  +I G
Sbjct: 518 EDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQ----MQKERHRPTTRTFLPIIHG 573

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
             +   ++      D M+ +G +P V  YN LI    + +   +A+ I +EM    V PN
Sbjct: 574 FARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPN 633

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
             TY  L+   A+ G  +  +     +   G  +D + Y  L+                 
Sbjct: 634 EHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALL----------------- 676

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264
                      S   SG       + V+KE    N+P       R  F      VY++  
Sbjct: 677 ----------KSCCKSGRM--QSALAVTKEMSAKNIP-------RNTF------VYNILI 711

Query: 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324
              A   DV     L++ ++K+   PD++     I     +GD+    ++ ++   S   
Sbjct: 712 DGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIK 771

Query: 325 PPAELYATLVEGAMFGYTPK 344
           P  + Y TL+ G      P+
Sbjct: 772 PNLKTYTTLINGWARASMPE 791



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 66  DMMLDGVQPTRDLFHSLIVG-TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           +M   G+    D++H+++ G TM G+  +    F D++K  GF P V  Y  LI++  K 
Sbjct: 414 EMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVF-DRLKECGFFPSVISYGCLINLYTKV 472

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
               +A+ I + MK   +K N +TY  L+N           +++  D T  G   D   Y
Sbjct: 473 GKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLY 532

Query: 185 AGLITA 190
             +ITA
Sbjct: 533 NNIITA 538



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 12/210 (5%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A  +E + +N   N   YN ++     +   +   D+   M  +G+ P    + S I   
Sbjct: 690 AVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINAC 749

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +Q       +M+A+G  P++  Y  LI+   +    ++A+  FEEMK    KP+ 
Sbjct: 750 CKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDK 809

Query: 147 QTYVCLLNACAAAGQLDPVY------AIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             Y CL+ +  +       Y      ++ R+M  +   +D     G     +  + + + 
Sbjct: 810 AVYHCLVTSLLSRATFAQSYVYSGLLSVCREMIESEMIVD----MGTAVHWSRCLRKIER 865

Query: 201 TATKIIELVEQS--KGWSSVETSGNNAENE 228
           T  ++ E ++++    W+S      N+E E
Sbjct: 866 TGGELTEALQKTFPPDWTSHNVLDVNSETE 895



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 104/251 (41%), Gaps = 10/251 (3%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R  ++ M   G++P+  ++ SLI     G  +++      +MK  G    +  Y+ ++  
Sbjct: 304 RQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGG 363

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K  N+D A   FEE K+     N   Y  ++ A      +D   A+VR+M   G    
Sbjct: 364 FAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAP 423

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN--NAENEMMGVSKEELY 238
              Y  ++  +T  +   ++    + + +++   + SV + G   N   ++  VSK    
Sbjct: 424 IDIYHTMMDGYT--MIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKA--- 478

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
            L  ++ +   G  +   +  Y +  +   +LKD     ++ E   KD   PDV +    
Sbjct: 479 -LEISKMMKMSG--IKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNI 535

Query: 299 IRCYLHSGDID 309
           I  +   G++D
Sbjct: 536 ITAFCGMGNMD 546



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D +   G  P+   +  LI    K  ++         MK +G   ++  Y+ LI+   
Sbjct: 446 VFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFL 505

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           K K+   A  +FE+  K  +KP+   Y  ++ A    G +D    +VR M
Sbjct: 506 KLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQM 555


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 4/135 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++ +M    + P    + SL+ G  K  R+   +   D+M+  G   DV  YN LI   
Sbjct: 608 NLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLID-- 665

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CKN   D+AI +F +MK   ++PN  T+  LL+     G+L     + +D+   G  L
Sbjct: 666 GLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHL 725

Query: 180 DKFCYAGLITAHTNK 194
           D + Y  +I  H  +
Sbjct: 726 DVYIYNVMIYGHCKQ 740



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 71/158 (44%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +    +   Y  +V +L  + +    + V   M+   V+P    +++L+ G +   
Sbjct: 507 EMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVY 566

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            ++      + M   G  PDV  Y  LI+   K K  D+A+ +F+EM +  + P+  TY 
Sbjct: 567 EVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYS 626

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L++    +G++  V+ ++ +M   G   D   Y  LI
Sbjct: 627 SLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLI 664



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 4/149 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   YN+++  L           +++ M   G++P    F  L+ G  KG
Sbjct: 646 DEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKG 705

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            RL+D       +   G+  DV +YN +I   G CK    ++A+ +  +M++    PN  
Sbjct: 706 GRLKDAQEVFQDLLTKGYHLDVYIYNVMIY--GHCKQGLLEEALTMLSKMEENGCIPNAV 763

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           T+  ++NA     + D    ++R M A G
Sbjct: 764 TFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ- 129
           G  P+    ++LI G     +++    F D++ A GF  +   Y  LI+  G CK  D  
Sbjct: 372 GYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN--GVCKIGDTR 429

Query: 130 -AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            AI++  ++     KPN + Y  +++A      +   Y +  +MT  G   D   Y+ LI
Sbjct: 430 GAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLI 489



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 104/300 (34%), Gaps = 48/300 (16%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++ +L   +       ++ +M + G+      + +LI G     +L++     
Sbjct: 132 NVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLL 191

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           + M      P+V  YN L+    K     +A  +   M K  VK N  TY  L++     
Sbjct: 192 NVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLV 251

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            ++     +   M+  G   D   Y  +I     KI R D       E++          
Sbjct: 252 YEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFC-KIKRVDKALNLFKEMI---------- 300

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--LTVYHVAFHACAELKDVQAME 277
                                            LSR   +  ++    + A++K      
Sbjct: 301 ---------------------------------LSRFPPIIQFNKILDSFAKMKHYSTAV 327

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL-YATLVEG 336
           +L   L+     PD++ +   I C+ H G I  G  V    I    +PP+ +   TL++G
Sbjct: 328 SLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAK-ILKRGYPPSTVTLNTLIKG 386



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 60/149 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+T++ +L   +       ++ +M + G+      + +LI G     +L++     
Sbjct: 446 NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLL 505

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M      PDV  Y  L+   GK     +A  +   M K  VKP+  TY  L+N     
Sbjct: 506 NEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLV 565

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            ++     +   M+  G   D   Y  LI
Sbjct: 566 YEVKKAQHVFNAMSLMGVTPDVHTYTILI 594



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 69  LDG--VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI---SVCGK 123
           +DG   +P  +++ ++I    K   + + +    +M   G   DV  Y+ LI    + GK
Sbjct: 438 IDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK 497

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
            K   +AI +  EM    + P+ +TY  L++A    G++    +++  M  A    D F 
Sbjct: 498 LK---EAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFT 554

Query: 184 YAGLITAH 191
           Y  L+  +
Sbjct: 555 YNTLMNGY 562



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ- 129
           G  P     ++LI G     ++++   F D++ A GF  +   Y  LI+  G C+  D  
Sbjct: 58  GYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN--GVCRIGDTR 115

Query: 130 -AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            AI+   ++     KPN + Y  +++A      +   Y +  +MT  G   +   Y+ LI
Sbjct: 116 AAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLI 175


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%)

Query: 17   ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
             + + F    A  +E  +R    N   Y  ++ +L    R     D +D +  DGV P  
Sbjct: 1636 CMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDA 1695

Query: 77   DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
              ++SLI    +  RL+D +   ++M+  G  P+V  +N LIS       ++ A+++  +
Sbjct: 1696 SFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK 1755

Query: 137  MKKYEVKPNGQTYVCLLNACA 157
            M++    P+ +TY  LL  C 
Sbjct: 1756 MEEQSCNPDIKTYTPLLKLCC 1776



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 28   GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
            G  +  R     + + +NT+V      R      D  ++M   G  P+   + SL+    
Sbjct: 1577 GVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC 1636

Query: 88   KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                 Q  +   D+M+     P+V  Y  L+   GK   + +A+  F+++K+  V P+  
Sbjct: 1637 MEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDAS 1696

Query: 148  TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
             Y  L+     AG+L+  Y++V +M   G   +   +  LI+A  +   +A++    +++
Sbjct: 1697 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDH-SQAENALKLLVK 1755

Query: 208  LVEQS 212
            + EQS
Sbjct: 1756 MEEQS 1760



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE  +  ++ +   Y ++V +   ++ F  +  + D+M      P    +  L+    K 
Sbjct: 1614 EEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKA 1673

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             R ++     D++K +G  PD + YN LI + G+    + A  + EEM+   + PN  T+
Sbjct: 1674 GRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTF 1733

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              L++A     Q +    ++  M       D   Y  L+
Sbjct: 1734 NTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLL 1772



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 38   ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
            A +AS YN+++  L    R      V ++M   G+ P    F++LI      S+ ++   
Sbjct: 1692 APDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALK 1751

Query: 98   FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE--EMKKYEVKPNGQTYVCLLNA 155
               +M+     PD+  Y  L+ +C  CK     I +F    M + ++ P+  TY  L++ 
Sbjct: 1752 LLVKMEEQSCNPDIKTYTPLLKLC--CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSW 1809

Query: 156  CAAAGQLDPVYAIVRDMTAAG 176
                G++      + +M + G
Sbjct: 1810 LCRNGKVAQSCLFLEEMVSKG 1830


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 33/337 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    +   YN+++ +L   +      +V + M+ +GV P    ++S++ G     
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++   F  +M+++G  PDV  Y+ L+    K     +A +IF+ M K  +KP   TY 
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            LL   A  G L  ++ ++  M   G   D + ++ LI A+  K  + D       ++ +
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA-KQGKVDQAMLVFSKMRQ 399

Query: 211 QSKGWSSVE--------TSGNNAENEMM--------GVS------KEELYNLPTAEYVHR 248
           Q    ++V               E+ M+        G+S         ++ L T     R
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459

Query: 249 RGGF----LSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
                   L R + +  + F++     C E + +++ E L E++ +    P+V      I
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES-EKLFELMVRIGVKPNVITYNTLI 518

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             Y  +G +D   K+    +     P    Y+TL+ G
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA  Y  V+  L    R       ++ M+ +G+ P   +++SLI G    ++ +      
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G   +   +N +I    K     ++ ++FE M +  VKPN  TY  L+N    A
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           G++D    ++  M + G   +   Y+ LI  +  KI R +D      E+  +S G S
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC-KISRMEDALVLFKEM--ESSGVS 578



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 149/384 (38%), Gaps = 32/384 (8%)

Query: 40  NASEYNTVVTSLT----SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   YN ++  L     SQ    LL  + DD    G  P    + ++I G  K       
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRG-GGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +    +M   G LPDV  YN +I+   K +  D+A+ +   M K  V P+  TY  +L+ 
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
             ++GQ       ++ M + G   D   Y+ L+  +  K  R  + A KI + + +    
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYS-LLMDYLCKNGRCME-ARKIFDSMTKRGLK 333

Query: 216 SSVETSGN--------NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
             + T G          A  EM G     L +L     +H      S L+  Y       
Sbjct: 334 PEITTYGTLLQGYATKGALVEMHG-----LLDLMVRNGIHPDHYVFSILICAY------A 382

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            + K  QAM    +M ++   +P+       I     SG +++    FE  I     P  
Sbjct: 383 KQGKVDQAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            +Y +L+ G     T    + A++ ++ M  R I L+    +   ++ +  K G    + 
Sbjct: 442 IVYNSLIHGLC---TCNKWERAEELILEMLDRGICLNTIFFNS--IIDSHCKEGRVIESE 496

Query: 388 YIWDLMQARKITPSLPAVEAYYNG 411
            +++LM    + P++       NG
Sbjct: 497 KLFELMVRIGVKPNVITYNTLING 520



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 2/166 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L +  ++    ++  +M+  G+      F+S+I    K  R+ ++    + M 
Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+V  YN LI+        D+A+++   M    +KPN  TY  L+N      +++
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
               + ++M ++G   D   Y  ++     T +   A +   +I E
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   +N+++ S   + R      +++ M+  GV+P    +++LI G     
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +       M + G  P+   Y+ LI+  G CK S  + A+ +F+EM+   V P+  T
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLIN--GYCKISRMEDALVLFKEMESSGVSPDIIT 583

Query: 149 YVCLLNA 155
           Y  +L  
Sbjct: 584 YNIILQG 590



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 51/253 (20%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++       +      +   M+  G++P    + +LI G  K SR++D     
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 100 DQMKANGFLPDVAVYN---------------------------------YLISVCGKCKN 126
            +M+++G  PD+  YN                                 Y I + G CKN
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629

Query: 127 --SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
             +D A+++F+ +   ++K   +T+  +++A    G+ D      +D+  A      F  
Sbjct: 630 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE----AKDLFVA------FSS 679

Query: 185 AGLITAH-TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
            GL+  + T ++   +     ++E ++Q   + S+E +G   ++ M+     EL  L   
Sbjct: 680 NGLVPNYWTYRLMAENIIGQGLLEELDQL--FLSMEDNGCTVDSGMLNFIVREL--LQRG 735

Query: 244 EYVHRRGGFLSRL 256
           E + R G +LS +
Sbjct: 736 E-ITRAGTYLSMI 747


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  + +   YN ++ +   + +FF   ++YD+M+  G+ P    + S+I G  K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           +RL         M   G  P++  +N LI   CG  K  D  + +  EM +  +  +  T
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-KRIDDGMELLHEMTETGLVADTTT 432

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G L+    ++++M ++G   D      L+    +     D  A ++ ++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD--ALEMFKV 490

Query: 209 VEQSKGWSSVETSGNNAE--------------NEMMGVSKEELYNLPTAEYVHRRGGFLS 254
           +++SK         N  E              NE   +  EELY     E  HR  G + 
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE----EMPHR--GIVP 544

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             +T   +    C + +  +A +    M  K   SP+V      I  Y  +G +D+G ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 315 F 315
           F
Sbjct: 604 F 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M +  F P+V  +  LI+   K    D  + +F EM +  +  N  TY+ L+      
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G ++    I ++M ++G   D      ++T   +K
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK 664



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 163/385 (42%), Gaps = 23/385 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D MM DG+QPT+  + +++ G  K G  +      
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  RDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           R   + +  +P+V +Y+ +I S+C   ++SD A  +F EM++  + P+  TY  ++    
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE--LVEQSK 213
           ++G+      ++++M       D   Y  LI A     K   A++   +++   ++  + 
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
            +SS+   G   +N +   + E ++      Y+    G    L+T   +    C   +  
Sbjct: 362 TYSSM-IDGFCKQNRL--DAAEHMF------YLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             ME L EM +    + D       I  +   GD++    + ++ I S   P      TL
Sbjct: 413 DGMELLHEMTETGLVA-DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 334 VEGAMFGYTPKG----MQLAQDTLVNMNSRNIF--LSPRMGSDLLLVAAGEKSGGYTTAN 387
           ++G       K      ++ Q +  ++++ + F  + P + +  +L++     G +  A 
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            +++ M  R I P      +  +GL
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGL 556



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
            +GV+P    ++ LI G +   +  +     ++M   G +PD   Y+ +I   G CK S 
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID--GLCKQSR 561

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A ++F+ M      PN  T+  L+N    AG++D    +  +M   G   +   Y  
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 187 LITA 190
           LI  
Sbjct: 622 LICG 625



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 97/242 (40%), Gaps = 27/242 (11%)

Query: 106 GFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  PDV  +N L+   G C      +A+ +F +M +   +PN  T+  L+N     G++ 
Sbjct: 144 GLHPDVVTFNTLLH--GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 164 PVYAIVRDM---------TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
              A++  M            G  +D  C  G   +  N + + ++ +  I  +V  S  
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             S+   G +++ + +    +E              G    L T   +    C+  +   
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQE-------------KGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A + L EML++ + SPDV      I  ++  G      +++++ +     P    Y++++
Sbjct: 309 AEQLLQEMLER-KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367

Query: 335 EG 336
           +G
Sbjct: 368 DG 369


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 122/292 (41%), Gaps = 7/292 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + TV+     + R      + D+M  + +     L++  I    K  ++   + F  ++K
Sbjct: 236 FTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIK 295

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G LPD   Y  +I V  K    D+A+ IFE+M++    P    Y  ++    +AG+ D
Sbjct: 296 SHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFD 355

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             Y+++    A G       Y  ++T    K    +   T      E+ K  ++   S  
Sbjct: 356 EAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRT-----FEEMKKDAAPNLSTY 410

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
           N   +M+  + E        + + +  G    ++TV ++      + K +    ++ E +
Sbjct: 411 NVLIDMLCKAGEVEAAFKVRDAM-KEAGLFPNVMTV-NIMIDRLCKAKKLDEACSIFEGM 468

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
                SPD       I      G +D+ ++++E  + S+K P A +Y +L++
Sbjct: 469 NHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIK 520



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT +       +      + ++M   G QPT   + S+I G  K  RL + +   ++ K
Sbjct: 620 YNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 679

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +NG   +V +Y+ LI   GK    D+A  I EE+ +  + PN  T+ CLL+A   A +++
Sbjct: 680 SNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEIN 739

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
                 ++M       +   Y+ LI
Sbjct: 740 EALVCFQNMKNLKGTPNHITYSILI 764



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 122/297 (41%), Gaps = 28/297 (9%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R +++++   G  P    +  LI G +K    ++T+     MK  G + D   YN  I  
Sbjct: 567 RALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFID- 625

Query: 121 CGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
            G CK+   ++A ++ EEMK    +P   TY  +++  A   +LD  Y +  +  + G  
Sbjct: 626 -GFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLE 684

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-----KGWSSVETSGNNAE--NEMMG 231
           L+   Y+ LI     K+ R D+    + EL+++        W+ +  +   AE  NE + 
Sbjct: 685 LNVVIYSSLIDGF-GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEAL- 742

Query: 232 VSKEELYNLP-TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP 290
           V  + + NL  T  ++             Y +  +    ++         + ++K    P
Sbjct: 743 VCFQNMKNLKGTPNHI------------TYSILINGLCRVRKFNKAFVFWQEMQKQGLKP 790

Query: 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQ 347
           +       I     +G+I     +FE +  +   P +  Y  ++EG    Y+ + M+
Sbjct: 791 NTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEG--LSYSRRAME 845



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 68/161 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   +        Y +V+  L    R      ++++   +G++    ++ SLI G  K 
Sbjct: 641 EEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKV 700

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ + +   +++   G  P+V  +N L+    K +  ++A+  F+ MK  +  PN  TY
Sbjct: 701 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITY 760

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             L+N      + +  +   ++M   G   +   Y  +I  
Sbjct: 761 SILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAG 801



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y+ ++  L   R+F      + +M   G++P    + ++I G  K   + +     
Sbjct: 756 NHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLF 815

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           ++ KANG +PD A YN +I      + + +A +IFEE +      + +T + LL+A
Sbjct: 816 ERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDA 871



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 6/172 (3%)

Query: 19  GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           GR  F      EE   R +  +   Y+ ++  L          +++  M   G       
Sbjct: 566 GRALF------EEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHA 619

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           +++ I G  K  ++   +   ++MK  G  P V  Y  +I    K    D+A  +FEE K
Sbjct: 620 YNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 679

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
              ++ N   Y  L++     G++D  Y I+ ++   G   + + +  L+ A
Sbjct: 680 SNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 731



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 61/149 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++  L   ++      +++ M      P    F SLI G  K  R+ D +   
Sbjct: 441 NVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLY 500

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +QM  +  +P+  VY  LI    KC   +   +IF+EM      P+ +     ++    A
Sbjct: 501 EQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKA 560

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+     A+  ++ + G   D   Y+ LI
Sbjct: 561 GETGKGRALFEEIKSRGFIPDVMSYSILI 589



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 4/172 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +++ A N S YN ++  L           V D M   G+ P     + +I    K  
Sbjct: 397 EEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAK 456

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L +     + M      PD   +  LI   GK    D A R++E+M   +  PN   Y 
Sbjct: 457 KLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYT 516

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
            L+ +    G+ +  + I ++M   G   D      L+ A+ + + +A +T 
Sbjct: 517 SLIKSFFKCGRKEDGHKIFKEMIHRGCSPD----LRLLNAYMDCVFKAGETG 564



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 57/145 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + +++  L  Q R      +Y+ M+     P   ++ SLI    K  R +D      +M 
Sbjct: 480 FCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMI 539

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+ + N  +    K   + +   +FEE+K     P+  +Y  L++    AG   
Sbjct: 540 HRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFAR 599

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
             Y +   M   G  LD   Y   I
Sbjct: 600 ETYELFYAMKEQGCVLDTHAYNTFI 624



 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 1/159 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++    N   +N ++ +L            + +M      P    +  LI G  + 
Sbjct: 711 EELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRV 770

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +    F F  +M+  G  P+   Y  +I+   K  N  +A  +FE  K     P+  +Y
Sbjct: 771 RKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASY 830

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGL 187
             ++   + + +    Y I  +    G  +  K C A L
Sbjct: 831 NAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALL 869


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 123/315 (39%), Gaps = 41/315 (13%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQA 130
           +P    ++ L+ G  + S+    F    ++  NG LPD   YN L+   G CK    + A
Sbjct: 336 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVD--GFCKEGQLNMA 393

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             IF  M    ++P+G T+  L++     G+L+    I+  M   G  LD+  +  LI  
Sbjct: 394 FNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDG 453

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGN-----------NAENEMMGVSKEELYN 239
           H  KI +A D       +VE ++  ++  T              N  N M+G  K   Y 
Sbjct: 454 HC-KIGKAKDVCFLFENMVE-NRCLTTAHTFNCFLDALGKDYKLNEANAMLG--KMMKYG 509

Query: 240 LPTAEYVHR-------RGG-------FLSRL--------LTVYHVAFHACAELKDVQAME 277
           L  +   H        R G        L R+        +  Y +  +       V+  E
Sbjct: 510 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 569

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
           T+L  +     SP+ +     ++ ++ +G +D   ++    + +   P + +Y+ L+ G 
Sbjct: 570 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 629

Query: 338 MFGYTPKGMQLAQDT 352
           +   T  G +    T
Sbjct: 630 VLSNTAIGARALSST 644



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M+ +    T   F+  +    K  +L +      +M   G +P V  +  LI   G
Sbjct: 466 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIE--G 523

Query: 123 KCKNSDQAI--RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C+  + A+  ++ E MK+    PN  TY  ++N     G+++    I+  M++ G   +
Sbjct: 524 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 583

Query: 181 KFCYAGLITAHTN--KIPRADDTATKIIE 207
            F YA L+ AH    ++ RA    + +++
Sbjct: 584 HFTYAVLVKAHVKAGRLDRAFQIVSTMVK 612



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 4/152 (2%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  +N  + +L    +      +   MM  G+ P+      LI G  +      +    +
Sbjct: 479 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 538

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           +MK  G  P+V  Y Y I + G C N   ++A  I   M  + V PN  TY  L+ A   
Sbjct: 539 RMKQAGCSPNV--YTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVK 596

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           AG+LD  + IV  M   G   +   Y+ L++ 
Sbjct: 597 AGRLDRAFQIVSTMVKNGCQPNSHIYSALLSG 628



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 51/125 (40%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +  +P    +  LI G  +  RL++ F  + +M   G  P    Y  LI        +D+
Sbjct: 193 ESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDK 252

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+++ +EM      PN  TY  L++     G+++    + R M   G       +  LI 
Sbjct: 253 AMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALIN 312

Query: 190 AHTNK 194
            +  +
Sbjct: 313 GYCKE 317



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++  L      F+   VY  M+ +G       + +++    K   +Q    F  ++ 
Sbjct: 96  YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 155

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAG 160
             GF  D  V   L  V   C+  D  +A R+FE+M K E  +PN  TY  L++    AG
Sbjct: 156 RLGFGLDTHVCTSL--VLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAG 213

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN------KIPRADDTATK 204
           +L+  + + ++M   G       Y  LI A  +       +   D+ ATK
Sbjct: 214 RLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 263



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 58/150 (38%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  ++  L    R      +   M+  G+      F +LI G  K  + +D  F  + M 
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 471

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            N  L     +N  +   GK    ++A  +  +M KY + P+  T+  L+     AG+  
Sbjct: 472 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 531

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               ++  M  AG   + + Y  +I    N
Sbjct: 532 LSLKMLERMKQAGCSPNVYTYTIIINGLCN 561



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D++   GV PT DL++ L+VG  K  R+ +       M  +G  PD A+ + +   C 
Sbjct: 678 IRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCK 736

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            CK  D  +   + +   +  P+  +Y  +++     G++     +V D+ 
Sbjct: 737 TCK-YDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLV 786


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  + +   YN ++ +   + +FF   ++YD+M+  G+ P    + S+I G  K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           +RL         M   G  P++  +N LI   CG  K  D  + +  EM +  +  +  T
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-KRIDDGMELLHEMTETGLVADTTT 432

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G L+    ++++M ++G   D      L+    +     D  A ++ ++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD--ALEMFKV 490

Query: 209 VEQSKGWSSVETSGNNAE--------------NEMMGVSKEELYNLPTAEYVHRRGGFLS 254
           +++SK         N  E              NE   +  EELY     E  HR  G + 
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE----EMPHR--GIVP 544

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             +T   +    C + +  +A +    M  K   SP+V      I  Y  +G +D+G ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 315 F 315
           F
Sbjct: 604 F 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M +  F P+V  +  LI+   K    D  + +F EM +  +  N  TY+ L+      
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G ++    I ++M ++G   D      ++T   +K
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK 664



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 163/385 (42%), Gaps = 23/385 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D MM DG+QPT+  + +++ G  K G  +      
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLL 242

Query: 99  RDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           R   + +  +P+V +Y+ +I S+C   ++SD A  +F EM++  + P+  TY  ++    
Sbjct: 243 RKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE--LVEQSK 213
           ++G+      ++++M       D   Y  LI A     K   A++   +++   ++  + 
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
            +SS+   G   +N +   + E ++      Y+    G    L+T   +    C   +  
Sbjct: 362 TYSSM-IDGFCKQNRL--DAAEHMF------YLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             ME L EM +    + D       I  +   GD++    + ++ I S   P      TL
Sbjct: 413 DGMELLHEMTETGLVA-DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 334 VEGAMFGYTPKG----MQLAQDTLVNMNSRNIF--LSPRMGSDLLLVAAGEKSGGYTTAN 387
           ++G       K      ++ Q +  ++++ + F  + P + +  +L++     G +  A 
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            +++ M  R I P      +  +GL
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGL 556



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
            +GV+P    ++ LI G +   +  +     ++M   G +PD   Y+ +I   G CK S 
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID--GLCKQSR 561

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A ++F+ M      PN  T+  L+N    AG++D    +  +M   G   +   Y  
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 187 LITA 190
           LI  
Sbjct: 622 LICG 625



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 27/242 (11%)

Query: 106 GFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  PDV  +  L+   G C      +A+ +F +M +   +PN  T+  L+N     G++ 
Sbjct: 144 GLHPDVVTFTTLLH--GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 164 PVYAIVRDM---------TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
              A++  M            G  +D  C  G   +  N + + ++ +  I  +V  S  
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAI 261

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             S+   G +++ + +    +E              G    L T   +    C+  +   
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQE-------------KGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A + L EML++ + SPDV      I  ++  G      +++++ +     P    Y++++
Sbjct: 309 AEQLLQEMLER-KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367

Query: 335 EG 336
           +G
Sbjct: 368 DG 369


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 121/314 (38%), Gaps = 48/314 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +RR      + ++M   GV P    F +LI G     +L       D M 
Sbjct: 369 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 428

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                PD+  YN LI   G C+    D+A  ++++M   E+ PN  TY  L+++    GQ
Sbjct: 429 NQRLRPDIVTYNTLID--GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 486

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           ++  +  + +M   G   +   Y  +I  +                        S   + 
Sbjct: 487 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCR----------------------SGNVSK 524

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
           G     +MM V+K                  +S  L  Y+   H   +   +     LL 
Sbjct: 525 GQKFLQKMM-VNK------------------VSPDLITYNTLIHGYIKEDKMHDAFKLLN 565

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE-LYATLVEGAMF- 339
           M++K++  PDV      I  +   G++     +FE  +C++   P    Y +++ G +  
Sbjct: 566 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK-MCAKGIEPDRYTYMSMINGHVTA 624

Query: 340 GYTPKGMQLAQDTL 353
           G + +  QL  + L
Sbjct: 625 GNSKEAFQLHDEML 638



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 145/353 (41%), Gaps = 19/353 (5%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D M+  G++P    ++S++ G  +       +    +M   G  PDV  +  LI    
Sbjct: 213 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 272

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    ++A++I++EM+   +KP+  ++ CL+   A  G++D   A +R+M   G   D  
Sbjct: 273 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 332

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            Y  +I         +D  A ++ + +        V T  N   N   G+ KE    L  
Sbjct: 333 IYTMVIGGFCRAGLMSD--ALRVRDEMVGCGCLPDVVTY-NTLLN---GLCKER--RLLD 384

Query: 243 AEYV---HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
           AE +    R  G    L T   +    C E K  +A++    ML + R  PD+      I
Sbjct: 385 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPDIVTYNTLI 443

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNS 358
                 GD+D  + +++D    E FP    Y+ L++     +  KG ++ A   L  M +
Sbjct: 444 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID----SHCEKGQVEDAFGFLDEMIN 499

Query: 359 RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           + I   P + +   ++    +SG  +        M   K++P L       +G
Sbjct: 500 KGIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 550



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   YN+++            +     MM++ V P    +++LI G +K 
Sbjct: 495 DEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE 554

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ D F   + M+     PDV  YN LI+      N  +A  IFE+M    ++P+  TY
Sbjct: 555 DKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 614

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKF 182
           + ++N    AG     + +  +M   G A  DKF
Sbjct: 615 MSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 136/349 (38%), Gaps = 11/349 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G++P    F  LI    +  ++     +  +M+  G +PD  +Y  +I    
Sbjct: 283 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC 342

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +      A+R+ +EM      P+  TY  LLN      +L     ++ +M   G   D  
Sbjct: 343 RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 402

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            +  LI  H   I    D A ++ + +   +    + T     +        ++  +L  
Sbjct: 403 TFTTLI--HGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL-- 458

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            + +H R  F + +     +  H C + +   A   L EM+ K    P++      I+ Y
Sbjct: 459 WDDMHSREIFPNHVTYSILIDSH-CEKGQVEDAFGFLDEMINKG-ILPNIMTYNSIIKGY 516

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF 362
             SG++  G K  +  + ++  P    Y TL+     GY  +        L+NM  +   
Sbjct: 517 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIH----GYIKEDKMHDAFKLLNMMEKEK- 571

Query: 363 LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           + P + +  +L+      G    A +I++ M A+ I P      +  NG
Sbjct: 572 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 620


>gi|341606837|gb|AEK83521.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606869|gb|AEK83537.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606977|gb|AEK83591.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606979|gb|AEK83592.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606981|gb|AEK83593.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606983|gb|AEK83594.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606985|gb|AEK83595.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606987|gb|AEK83596.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606989|gb|AEK83597.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606991|gb|AEK83598.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606993|gb|AEK83599.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606995|gb|AEK83600.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606997|gb|AEK83601.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606999|gb|AEK83602.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607001|gb|AEK83603.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607003|gb|AEK83604.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607005|gb|AEK83605.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607007|gb|AEK83606.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607009|gb|AEK83607.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607011|gb|AEK83608.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607013|gb|AEK83609.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607015|gb|AEK83610.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 207

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 17  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 76

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 77  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGR 134

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 135 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 185


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 4/164 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E+    +  +   Y+ +   L  + R     ++  +M   G  P    +++LI G  K 
Sbjct: 355 DEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKA 414

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
           S+ +  +   + + ++GF+PDV  Y  ++   G CK    D+A+++ E M K    P+  
Sbjct: 415 SKTEKAYELLESLVSSGFVPDVVTYTIIVD--GLCKEGRLDKALKMVEGMLKRGCTPSVI 472

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           TY  L+      G++D  + I ++M +     D   Y  L+  +
Sbjct: 473 TYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGY 516



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     + R   + +V++DM   G  P    ++ ++ G  K  ++ + F F + M 
Sbjct: 541 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 600

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G +PDV  YN +I    K     +A ++ ++M +  + P+  TY  L+       + D
Sbjct: 601 SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFD 660

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
               I+++M  AG   D   Y  LI+  + TN++  A
Sbjct: 661 DAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA 697



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 65/156 (41%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A RN   +   YNT+++ L  Q+     +D+ D+ +  G  P    +  L  G  K  R+
Sbjct: 323 AERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRI 382

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            + F    +M   G  P++  YN LI    K   +++A  + E +      P+  TY  +
Sbjct: 383 DEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTII 442

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++     G+LD    +V  M   G       Y  L+
Sbjct: 443 VDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 478



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 122/309 (39%), Gaps = 45/309 (14%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  A +   YN ++  L    +     ++  +M+  GV P    F+S++ G  K 
Sbjct: 250 KEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKA 309

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +        M      P    YN LIS   K +N D+A  + +E       P+  TY
Sbjct: 310 GKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTY 369

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRADDTATKIIE 207
             L +     G++D  + +V++M+  G      C   L+T +T  + + +A  T  K  E
Sbjct: 370 SILADGLCKRGRIDEAFELVKEMSGKG------CTPNLVTYNTLIDGLCKASKTE-KAYE 422

Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
           L+E      S+ +S                             GF+  ++T   +    C
Sbjct: 423 LLE------SLVSS-----------------------------GFVPDVVTYTIIVDGLC 447

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            E +  +A++ +  MLK+   +P V      +     +G +D  H +F++ +  +    A
Sbjct: 448 KEGRLDKALKMVEGMLKRG-CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADA 506

Query: 328 ELYATLVEG 336
             Y +LV G
Sbjct: 507 LAYVSLVNG 515



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 123/337 (36%), Gaps = 32/337 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ A R    N   YN V+  L    +        + M   G  P    ++ +I G  K 
Sbjct: 562 EDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKA 621

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           S+ ++     DQM   G  PD   YN L++   K +  D A+ I + M K  V P+  TY
Sbjct: 622 SKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTY 681

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAG----------LDKFCYAG------LITAHTN 193
             L++  +   +L   Y ++ +M   G            +D+ C  G      L+  H  
Sbjct: 682 NTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMT 741

Query: 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYN-----LPTAEYVHR 248
                 +T T  I +    K     E S  +  +EM  +  E  Y      L  AE + R
Sbjct: 742 GHGVEANTVTYNIFIDRLCKEGRLDEAS--SLLSEMDTLRDEVSYTTVIIGLCKAEQLDR 799

Query: 249 RGGFLSRLLTV---------YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
                  ++ V         +++   A  + K +    TLL ++ +   SP V      I
Sbjct: 800 ASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVI 859

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            C      +D   ++F++         +  Y  L+ G
Sbjct: 860 TCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYG 896



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 149/394 (37%), Gaps = 27/394 (6%)

Query: 22  FFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
           FFV  AG   +    +  N     T++ + +S R    +  +++ M+  G  P    +H 
Sbjct: 112 FFVW-AGDRGFKHSTFTRNCF-LQTLLENGSSDR----IPAMFERMLDAGYAPDSYTYHL 165

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           +I    + +++   F   D+ K  GF P+V+VY  L     K      A+ IF  +    
Sbjct: 166 VIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP--- 222

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201
             P+   Y  +++        D     +++M       D F Y  LI     K  + D  
Sbjct: 223 -SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLC-KASKTDKA 280

Query: 202 ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261
           +  + E+V+  +G +    + N+  + +    K E  +   A    R           Y+
Sbjct: 281 SEMLHEMVD--RGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN---CRPSCCTYN 335

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYI 319
                  + ++V   + L++        PDV  Y ++ +  C    G ID   ++ ++  
Sbjct: 336 TLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLC--KRGRIDEAFELVKEMS 393

Query: 320 CSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGE 378
                P    Y TL++G      T K  +L + +LV+         P + +  ++V    
Sbjct: 394 GKGCTPNLVTYNTLIDGLCKASKTEKAYELLE-SLVSSG-----FVPDVVTYTIIVDGLC 447

Query: 379 KSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           K G    A  + + M  R  TPS+    A   GL
Sbjct: 448 KEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 481



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 1/138 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           Y TV+  L    +      +  +M+ + G+  T   F+ LI    K  RL +       M
Sbjct: 784 YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLM 843

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              G  P V  YN +I+   K    D+A  +F+EM    +  +  +Y  L+      G+ 
Sbjct: 844 VQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRG 903

Query: 163 DPVYAIVRDMTAAGAGLD 180
                ++ +M ++   +D
Sbjct: 904 KEALQVLEEMASSDCEID 921



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 68  MLDGVQ--PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           ++DG++  P  D++++L+ G  K  RL +     + M   G +P++  YN ++   G CK
Sbjct: 528 VVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMD--GLCK 585

Query: 126 NS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
           +   D+A    E M      P+  +Y  +++    A +      ++  M  AG   D   
Sbjct: 586 HGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 645

Query: 184 YAGLITAHTNKIPRADD 200
           Y  L+ A   K  R DD
Sbjct: 646 YNTLM-AQFCKEERFDD 661


>gi|341605691|gb|AEK82948.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605825|gb|AEK83015.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 188


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1202

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 29   AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
            +EE  ++    N   YNT++  L+   +     D+  ++   G++P    ++SLI G   
Sbjct: 925  SEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRF 984

Query: 89   GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
               +Q      ++MK +G  P +  Y+ LIS+C K +  +   +IF EM    ++P+   
Sbjct: 985  AGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTK-EGIELTKKIFGEMS---LQPDLLV 1040

Query: 149  YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            Y  +L+  A  G +D  + + + M     GLDK  Y  LI   
Sbjct: 1041 YNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQ 1083



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 45/268 (16%)

Query: 44   YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
            YN ++     +  F    D+  +M  +G  P    + +LI    KGS+L +    +  M+
Sbjct: 835  YNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDME 894

Query: 104  ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              G  P+V +YN LI  C      + A R  EEM K  ++ N  TY  L++  +  G+L 
Sbjct: 895  DRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLA 954

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                ++ +++  G   D F Y  LI+ +     R      + I L E+ K      TSG 
Sbjct: 955  EAEDMLLEISRKGLKPDVFTYNSLISGY-----RFAGNVQRCIALYEEMK------TSGI 1003

Query: 224  NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                             PT              L  YH+    C +    + +E   ++ 
Sbjct: 1004 K----------------PT--------------LKTYHLLISLCTK----EGIELTKKIF 1029

Query: 284  KKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
             +    PD+ +    + CY   GD+D  
Sbjct: 1030 GEMSLQPDLLVYNGVLHCYAVHGDMDKA 1057



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M  D + PT  +++ LI G  K  +++D     D+M A   LP +  YN LI   
Sbjct: 573 ELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLID-- 630

Query: 122 GKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CK  N +++ ++ E MK   ++P+  T+  LL     AG ++    ++ +M   G   
Sbjct: 631 GYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVP 690

Query: 180 DKFCYAGLITAHTN 193
           D F ++ L   +++
Sbjct: 691 DAFTFSILFDGYSS 704



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V + M  D ++P+   F++L+ G  K   ++D      +MK  GF+PD   ++ L     
Sbjct: 644 VRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYS 703

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
               +D A+ ++E      +K N  T   LLNA    GQ++    I+    A G   ++ 
Sbjct: 704 SNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEV 763

Query: 183 CYAGLITAHTNK 194
            Y  +I  ++ K
Sbjct: 764 LYNTMIDGYSRK 775



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 112/295 (37%), Gaps = 45/295 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L   R+      ++D+M+   + P+   +++LI G  K    + +F  R++MK
Sbjct: 590 YNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMK 649

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+   P +  +N L+    K    + A  +  EMK     P+  T+  L +  ++  + D
Sbjct: 650 ADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKAD 709

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVETS 221
               +      +G  ++ +  + L+ A     +I +A++   +     E +KG       
Sbjct: 710 AALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGR-----EMAKGL------ 758

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                     V  E LYN     Y  R+G  +              A +K + AME    
Sbjct: 759 ----------VPNEVLYNTMIDGY-SRKGDLVG-------------ARMK-IDAME---- 789

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
              K    PD       IR +   GD++N  +           P  E Y  L+ G
Sbjct: 790 ---KQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGG 841



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 134/326 (41%), Gaps = 26/326 (7%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            NA   + ++ +L  + +     ++    M  G+ P   L++++I G  +   L       
Sbjct: 726  NAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKI 785

Query: 100  DQMKANGFLPDVAVYNYLI-SVC--GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
            D M+  G  PD   YN LI + C  G  +N++Q +    +MK   V P+ +TY  L+   
Sbjct: 786  DAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVN---KMKLKGVSPSVETYNILIGGY 842

Query: 157  AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
                + D  + ++++M   G   +   Y  LI              +K++E     +   
Sbjct: 843  GRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCK--------GSKLLEAQIVKRDME 894

Query: 217  SVETSGNNAENEMM---GVSKEELYN-LPTAEYVHRRGGFLSRLLTVYHVAFHACA-ELK 271
                S N     M+     SK ++ +    +E + ++G  L+  L  Y+      +   K
Sbjct: 895  DRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELN--LVTYNTLIDGLSMNGK 952

Query: 272  DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
              +A + LLE+ +K  K PDV+     I  Y  +G++     ++E+   S   P  + Y 
Sbjct: 953  LAEAEDMLLEISRKGLK-PDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYH 1011

Query: 332  TLVEGAMFGYTPKGMQLAQDTLVNMN 357
             L+       T +G++L +     M+
Sbjct: 1012 LLISLC----TKEGIELTKKIFGEMS 1033



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 6/162 (3%)

Query: 31   EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKG 89
            E +R+    +   YN++++             +Y++M   G++PT   +H LI + T +G
Sbjct: 962  EISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEG 1021

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              L    F    ++     PD+ VYN ++       + D+A  + ++M +  +  +  TY
Sbjct: 1022 IELTKKIFGEMSLQ-----PDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTY 1076

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
              L+      G+L  V +++ +M A     +   Y  ++  H
Sbjct: 1077 NSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGH 1118



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/128 (21%), Positives = 59/128 (46%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++  L   ++F +  +V+ +++    +P++ ++   I   +K S +       ++MK + 
Sbjct: 523 LLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR 582

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
             P V +YN LI    K +    A ++F+EM    + P+  TY  L++     G  +  +
Sbjct: 583 ISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSF 642

Query: 167 AIVRDMTA 174
            +   M A
Sbjct: 643 KVRERMKA 650


>gi|260780430|gb|ACX50761.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780496|gb|ACX50794.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 188

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  ++ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTFSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDAFT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 27  AGAEEYARR-----NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
           AG  E ARR      +  +   +N ++ +L  + R      V+DDM+  G  P+   +  
Sbjct: 143 AGRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSI 202

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           L+  T K S  +      D+M+A G  PD+  YN LI+      + D+A+ I  ++  + 
Sbjct: 203 LLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHG 262

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            KP+  TY  +L +   + +   V  +  +M +     D+  +  ++T+
Sbjct: 263 CKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTS 311



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/173 (18%), Positives = 73/173 (42%), Gaps = 2/173 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  V+ SL    R+  + +++ +M  +   P    F++++    +   +       
Sbjct: 266 DAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVV 325

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M  +G +PD+  Y+ ++         D A+ +   +K Y  KP+   Y  +L    + 
Sbjct: 326 DHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSI 385

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            Q +    ++ +M  +    D+  +  +I +   K     D A K++E + ++
Sbjct: 386 EQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQK--GLVDRAIKVVEQMSEN 436



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 2/176 (1%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A    A +   +NT+VTSL  Q        V D M   G  P    + S++ G     
Sbjct: 292 EMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVG 351

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+ D      ++K+ G  PD   Y  ++      +  + A  +  EM   +  P+  T+ 
Sbjct: 352 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFN 411

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            ++ +    G +D    +V  M+  G   D   Y  +I    N+  R  D A +++
Sbjct: 412 TVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNE--RCIDDAMELL 465



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV++++T   +     D+   M+ +G+ P    + SL  G  +            +++
Sbjct: 583 YNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQ 642

Query: 104 ANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PD   YN ++   G C+N  +D AI  F  M      P+  TY+ LL A A    
Sbjct: 643 DMGLSPDATFYNDILL--GFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECL 700

Query: 162 LDPVYAIVRDMTAAGAGLDK 181
           LD    ++ ++ + G  LDK
Sbjct: 701 LDEAKQLLVNLCSLGV-LDK 719



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 4/153 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TV+  L S  ++    ++  +M+     P    F+++I    +   +       +QM 
Sbjct: 375 YTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMS 434

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
            NG  PD+  YN +I   G C     D A+ +   ++ Y  KP+  T+  LL    +  +
Sbjct: 435 ENGCNPDIVTYNSIID--GLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDR 492

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            +    ++ +M  +    D   +  +IT+   K
Sbjct: 493 WEDAEQLMVNMMHSDCPPDATTFNTVITSLCQK 525



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 2/144 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++  L S  R+     +  +MM     P    F+++I    +   L         M 
Sbjct: 480 FNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMA 539

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG +P+ + YN ++    K   + +A+++   M      P+  TY  +++    AG+++
Sbjct: 540 ENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKME 597

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               ++R M + G   D   Y  L
Sbjct: 598 EALDLLRVMVSNGLSPDTITYRSL 621



 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 64/379 (16%), Positives = 144/379 (37%), Gaps = 42/379 (11%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ ++ ++       ++  D+   G +P    +  ++       R ++      +M 
Sbjct: 235 YNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMA 294

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +N   PD   +N +++   +    D+AI++ + M ++   P+  TY  +L+     G++D
Sbjct: 295 SNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVD 354

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               ++  + + G   D   Y  ++                        KG  S+E    
Sbjct: 355 DAVELLSRLKSYGCKPDTIAYTTVL------------------------KGLCSIE-QWE 389

Query: 224 NAENEMMGV------SKEELYNLPTAEYVHRRGGFLSRLLTVY-HVAFHACAELKDVQAM 276
           +AE  M  +        E  +N   A    +  G + R + V   ++ + C    D+   
Sbjct: 390 HAEELMAEMVCSDCPPDEVTFNTVIASLCQK--GLVDRAIKVVEQMSENGCN--PDIVTY 445

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            ++++ L  +R   D   ++ N++ Y    DI   + + +     +++  AE    L+  
Sbjct: 446 NSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAE---QLMVN 502

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD-LMQA 395
            M    P         + ++  + + L  +    L ++A        +T N + D L++A
Sbjct: 503 MMHSDCPPDATTFNTVITSLCQKGLLL--QAIETLKIMAENGCIPNQSTYNIVVDALLKA 560

Query: 396 RKITPSLPAVEAYYNGLKD 414
            K   +L  +    NG  D
Sbjct: 561 GKTQEALKLLSGMTNGTPD 579



 Score = 41.2 bits (95), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A+ +NTV+TSL  +       +    M  +G  P +  ++ ++   +K  + Q+     
Sbjct: 511 DATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLL 570

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             M  NG  PD+  YN +IS   K    ++A+ +   M    + P+  TY
Sbjct: 571 SGM-TNGT-PDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITY 618



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQ 129
           G   T   +++++ G  +  R++D    R  +    F PD   +N LI ++C + +  D 
Sbjct: 125 GASATVVTYNTMVNGYCRAGRIEDA---RRLISGMPFPPDTFTFNPLIRALCVRGRVPD- 180

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A+ +F++M      P+  TY  LL+A   A        ++ +M A G   D   Y  LI 
Sbjct: 181 ALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLIN 240

Query: 190 AHTNK 194
           A  N+
Sbjct: 241 AMCNE 245


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 143/366 (39%), Gaps = 50/366 (13%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++       + +L       MM  G +P    F SLI G   G+R+++     +QM  
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            G  PDV +Y  +I    K  + + A+ +F++M+ Y ++P+   Y  L+N    +G+   
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
             +++R MT      D   +  LI A                  V++ K   +       
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDA-----------------FVKEGKFLDA------- 266

Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
                     EELYN    E +  R      + T   +    C E   V     +  +++
Sbjct: 267 ----------EELYN----EMI--RMSIAPNIFTYTSLINGFCME-GCVDEARQMFYLME 309

Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE--LYATLVEGAMFGYT 342
                PDV      I  +     +D+  K+F  Y  S+K        Y TL++G  FG  
Sbjct: 310 TKGCFPDVVAYTSLINGFCKCKKVDDAMKIF--YEMSQKGLTGNTITYTTLIQG--FGQV 365

Query: 343 PKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
            K   +AQ+   +M SR +   P + +  +L+     +G    A  I++ MQ R++    
Sbjct: 366 GKP-NVAQEVFSHMVSRGV--PPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVA 422

Query: 403 PAVEAY 408
           P +  Y
Sbjct: 423 PNIWTY 428



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 116/308 (37%), Gaps = 13/308 (4%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           G  LG R     +   +        +   Y T++ SL           ++D M   G++P
Sbjct: 151 GFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRP 210

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
              ++ SL+ G     R +D       M      PDV  +N LI    K      A  ++
Sbjct: 211 DVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELY 270

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            EM +  + PN  TY  L+N     G +D    +   M   G   D   Y  LI     K
Sbjct: 271 NEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFC-K 329

Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
             + DD      E+ ++    +++  +       + G  +    N+    + H     + 
Sbjct: 330 CKKVDDAMKIFYEMSQKGLTGNTITYT-----TLIQGFGQVGKPNVAQEVFSHMVSRGVP 384

Query: 255 RLLTVYHVAFHA-CAELKDVQAMETLLEMLKK--DRKSPDV--YIVMQNIRCYLHSGDID 309
             +  Y+V  H  C   K  +A+    +M K+  D  +P++  Y V+ +  CY  +G ++
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCY--NGKLE 442

Query: 310 NGHKVFED 317
               VFED
Sbjct: 443 KALMVFED 450


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 75/173 (43%)

Query: 17   ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
             + + F    A  +E  +R    N   Y  ++ +L    R     D +D +  DGV P  
Sbjct: 1595 CMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDA 1654

Query: 77   DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
              ++SLI    +  RL+D +   ++M+  G  P+V  +N LIS       ++ A+++  +
Sbjct: 1655 SFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK 1714

Query: 137  MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
            M++    P+ +TY  LL  C     +  +  +V  M       D   Y  L++
Sbjct: 1715 MEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVS 1767



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 28   GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
            G  +  R     + + +NT+V      R      D  ++M   G  P+   + SL+    
Sbjct: 1536 GVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC 1595

Query: 88   KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                 Q  +   D+M+     P+V  Y  L+   GK   + +A+  F+++K+  V P+  
Sbjct: 1596 MEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDAS 1655

Query: 148  TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
             Y  L+     AG+L+  Y++V +M   G   +   +  LI+A  +   +A++    +++
Sbjct: 1656 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDH-SQAENALKLLVK 1714

Query: 208  LVEQS 212
            + EQS
Sbjct: 1715 MEEQS 1719



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
            EE  +  ++ +   Y ++V +   ++ F  +  + D+M      P    +  L+    K 
Sbjct: 1573 EEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKA 1632

Query: 90   SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             R ++     D++K +G  PD + YN LI + G+    + A  + EEM+   + PN  T+
Sbjct: 1633 GRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTF 1692

Query: 150  VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              L++A     Q +    ++  M       D   Y  L+
Sbjct: 1693 NTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLL 1731



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 38   ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
            A +AS YN+++  L    R      V ++M   G+ P    F++LI      S+ ++   
Sbjct: 1651 APDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALK 1710

Query: 98   FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE--EMKKYEVKPNGQTYVCLLNA 155
               +M+     PD+  Y  L+ +C  CK     I +F    M + ++ P+  TY  L++ 
Sbjct: 1711 LLVKMEEQSCNPDIKTYTPLLKLC--CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSW 1768

Query: 156  CAAAGQLDPVYAIVRDMTAAG 176
                G++      + +M + G
Sbjct: 1769 LCRNGKVAQSCLFLEEMVSKG 1789


>gi|341606831|gb|AEK83518.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606833|gb|AEK83519.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606835|gb|AEK83520.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606839|gb|AEK83522.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606841|gb|AEK83523.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606843|gb|AEK83524.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606845|gb|AEK83525.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606847|gb|AEK83526.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606849|gb|AEK83527.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606851|gb|AEK83528.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606853|gb|AEK83529.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606855|gb|AEK83530.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606857|gb|AEK83531.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606859|gb|AEK83532.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606861|gb|AEK83533.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606863|gb|AEK83534.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606865|gb|AEK83535.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606867|gb|AEK83536.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606871|gb|AEK83538.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606873|gb|AEK83539.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606875|gb|AEK83540.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606877|gb|AEK83541.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606879|gb|AEK83542.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606881|gb|AEK83543.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606883|gb|AEK83544.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606885|gb|AEK83545.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606887|gb|AEK83546.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606889|gb|AEK83547.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606891|gb|AEK83548.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606893|gb|AEK83549.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606895|gb|AEK83550.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606897|gb|AEK83551.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606899|gb|AEK83552.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606901|gb|AEK83553.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606903|gb|AEK83554.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606905|gb|AEK83555.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606907|gb|AEK83556.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606909|gb|AEK83557.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606911|gb|AEK83558.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606913|gb|AEK83559.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606915|gb|AEK83560.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606917|gb|AEK83561.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606919|gb|AEK83562.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606921|gb|AEK83563.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606923|gb|AEK83564.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606925|gb|AEK83565.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606927|gb|AEK83566.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606929|gb|AEK83567.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606931|gb|AEK83568.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606933|gb|AEK83569.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606935|gb|AEK83570.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606937|gb|AEK83571.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606939|gb|AEK83572.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606941|gb|AEK83573.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606943|gb|AEK83574.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606945|gb|AEK83575.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606947|gb|AEK83576.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606949|gb|AEK83577.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606951|gb|AEK83578.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606953|gb|AEK83579.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606957|gb|AEK83581.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606959|gb|AEK83582.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606961|gb|AEK83583.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606963|gb|AEK83584.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606965|gb|AEK83585.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606967|gb|AEK83586.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606969|gb|AEK83587.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606971|gb|AEK83588.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606973|gb|AEK83589.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606975|gb|AEK83590.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 208

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 17  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 76

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 77  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGR 134

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 135 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 185


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 160/419 (38%), Gaps = 46/419 (10%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +++   +A+ YN ++  L    +    R+V   M+     P    + SLIVG  + 
Sbjct: 116 DEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQT 175

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
           + L +     ++MK +G  PD   YN L++  G CK +  ++  ++ EEM +   +P+  
Sbjct: 176 NALDEARKLMEKMKESGLTPDTVAYNALLN--GLCKQNQLEEVSKLLEEMVEAGREPDTF 233

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD------- 200
           +Y  ++     +G+ +    I+  M     G D   Y  L+     K+ + D+       
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFC-KVSKMDEAERLLED 292

Query: 201 -----TATKIIELVEQSKGWSSVETSGN--NAENEMM--GVSKEEL-YN-----LPTAEY 245
                 A  +I       G+S  +   +      +M   G+S + + YN     L  A  
Sbjct: 293 MVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGK 352

Query: 246 VHRRGGFLSRL--------LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
           +      L  +        +  Y +  +   +L  V     LLEM+ +    P++     
Sbjct: 353 LEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNT 412

Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357
            I  +  +G +D GHKV E        P    Y+TL++    GY        QD    + 
Sbjct: 413 MIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLID----GYCKANRM--QDAFAILG 466

Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDRE 416
                +SP   S   ++     +G    A  + DLM  +   P+         GL D E
Sbjct: 467 -----ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVE 520



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 149/392 (38%), Gaps = 49/392 (12%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN-------------- 115
           D  +P+   + +LI G  +    +      ++M A  F PDV  +N              
Sbjct: 18  DPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDR 77

Query: 116 -----------------YLISVCG--KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                            Y I + G  +C+  D+A ++ +EM + +  P+   Y CL+   
Sbjct: 78  ALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGL 137

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKG 214
              G++D    +++ M       D   Y  LI     TN +    D A K++E +++S G
Sbjct: 138 CKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNAL----DEARKLMEKMKES-G 192

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
            +    + N   N +   ++ E  +    E V    G      +   V    C   K  +
Sbjct: 193 LTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVE--AGREPDTFSYNTVVACLCESGKYEE 250

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A + L +M++K +  PDV      +  +     +D   ++ ED +     P    Y TL+
Sbjct: 251 AGKILEKMIEK-KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLI 309

Query: 335 EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394
            G       +  +LA    V  +     +SP + +   L+    K+G    A+ + ++M 
Sbjct: 310 GG-----FSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMV 364

Query: 395 ARKITPSLPAVEAYYNGLKDREVPADDPRLVV 426
            +   P +       NGL  +    DD RL++
Sbjct: 365 EKDCAPDVVTYSILVNGLC-KLGKVDDARLLL 395



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 130/341 (38%), Gaps = 11/341 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
             PT   +  LI G  +  R+ + +   D+M      PD AVYN LI+   K    D A 
Sbjct: 88  CSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAAR 147

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            + + M +    P+  TY  L+  C     LD    ++  M  +G   D   Y  L+   
Sbjct: 148 NVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGL 207

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
             K  + ++ +  + E+VE  +   +   S N     +    K E       + + ++ G
Sbjct: 208 C-KQNQLEEVSKLLEEMVEAGREPDTF--SYNTVVACLCESGKYEEAGKILEKMIEKKCG 264

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
                +  Y+       ++  +   E LLE +   R +P V      I  +  +  + + 
Sbjct: 265 ---PDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADA 321

Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDL 371
           ++V ED   +   P    Y  L++G         ++ A + L  M  ++   +P + +  
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLC---KAGKLEEAHELLEVMVEKDC--APDVVTYS 376

Query: 372 LLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           +LV    K G    A  + ++M  R   P+L       +G 
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGF 417



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G +P    +  LI G  K  R++D     D M   G +PDVA Y  LI    K    D A
Sbjct: 536 GCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAA 595

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            + F+ M+    +P+   Y  L++    +G ++    +++ M   G   D   Y  L+ +
Sbjct: 596 YQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRS 655

Query: 191 HTNK 194
            T +
Sbjct: 656 LTTE 659



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + R    N   Y+ ++  L   +R     +V D M+  G  P    + SLI G  K +++
Sbjct: 533 SERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKM 592

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
              +     M+ +G  PD   YN LIS   +  N ++AI + + M +    P+  TY  L
Sbjct: 593 DAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSL 652

Query: 153 LNA 155
           + +
Sbjct: 653 MRS 655


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 111/288 (38%), Gaps = 28/288 (9%)

Query: 16  GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           G LGR  +F   +   +E  R     N   YN ++ S           +V++ M   G +
Sbjct: 372 GNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCK 431

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P R  + +LI    K   L        +M+A G  PD   Y+ +I+  GK  +   A ++
Sbjct: 432 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAH 191
           F EM      PN  TY  +++  A A        + RDM  AG   DK  Y+ +  +  H
Sbjct: 492 FCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH 551

Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
              +  A+   T++     Q K W                +  E +Y L    +   + G
Sbjct: 552 CGYLEEAEAVFTEM-----QQKNW----------------IPDEPVYGLLVDLW--GKAG 588

Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
            + +    Y    HA   L +V    +LL    +  K  + Y ++QN+
Sbjct: 589 NVEKAWQWYQAMLHA-GLLPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           + ++   Y T+V +L   ++F  +  + D+M+ DG QP    ++ LI    + + L +  
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAM 419

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              +QM+  G  PD   Y  LI +  K    D A+ +++ M+   + P+  TY  ++N  
Sbjct: 420 NVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
             AG L   + +  +M      +D+ C   L+T
Sbjct: 480 GKAGHLPAAHKLFCEM------VDQGCTPNLVT 506



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 68/160 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++      R +     +Y DM   G +P +  +  ++        L++     
Sbjct: 503 NLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVF 562

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+   ++PD  VY  L+ + GK  N ++A + ++ M    + PN  T   LL+     
Sbjct: 563 TEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRV 622

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
            ++   Y ++++M A G       Y  L++  T+   + D
Sbjct: 623 NKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD 662



 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 40/95 (42%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FF    +  GF  D   Y  ++   G+ K      ++ +EM +   +PN  TY  L+++ 
Sbjct: 350 FFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSY 409

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             A  L+    +   M  AG   D+  Y  LI  H
Sbjct: 410 GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444


>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
 gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 10/247 (4%)

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           PT   F+ L+            F      KA G   D  +Y  LIS C K    D    +
Sbjct: 40  PTLSTFNMLMSVCATSQNSAGAFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEV 99

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--H 191
           F EM    V+PN  TY  L++ CA AGQ+   +     M +     D+  +  LITA   
Sbjct: 100 FHEMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 159

Query: 192 TNKIPRADDTATKII-ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
           +  + RA D   ++  E         +V        N       +E+YN+     VH+  
Sbjct: 160 SGAVDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEVYNM-----VHKYN 214

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
             +     VY +A ++C+++ D +    + + + +    PD   +   I    H+G +D 
Sbjct: 215 --IKGTPEVYTIAINSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDA 272

Query: 311 GHKVFED 317
             ++ ++
Sbjct: 273 AFEIIQE 279



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++++     +   + +V+ +M+  GV+P    + +LI G  +  ++   F     M+
Sbjct: 80  YTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMR 139

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD  V+N LI+ CG+    D+A  +  EM  +   + P+  T   L+ AC  AGQ
Sbjct: 140 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQ 199

Query: 162 LD 163
           +D
Sbjct: 200 VD 201



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 17/218 (7%)

Query: 5   QSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNT---------VVTSLTSQR 55
           Q I   H +VG  +      T+AG  + A+  Y N   +YN           + S +   
Sbjct: 178 QPIDPDHITVGALIKA---CTNAGQVDRAQEVY-NMVHKYNIKGTPEVYTIAINSCSQIG 233

Query: 56  RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115
            +     V+DDM   GV P      +LI       ++   F    + KA G    +  Y+
Sbjct: 234 DWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYS 293

Query: 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
            L+  C   KN  + + ++E++K  ++KP   T   L+ A     QL     ++ +M A 
Sbjct: 294 SLMGACCNAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAW 353

Query: 176 GAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           G   +   Y+ L  A      R DD    ++ L +  K
Sbjct: 354 GLRPNTITYSILSVASE----RKDDLEAGLMLLSQAKK 387



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           VY   I+ C +  + + A ++F++M +  V P+      L++    AG++D  + I+++ 
Sbjct: 221 VYTIAINSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEA 280

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGV 232
            A GA L    Y+ L+ A  N          K +EL E  K   S++     A    +  
Sbjct: 281 KAKGAQLGIIPYSSLMGACCNA-----KNWQKGLELYEDIK---SMKIKPTVATMNALIT 332

Query: 233 SKEELYNLPTA-EYVHRRGGFLSRLLTVYHVAFHACAELK-DVQAMETLLEMLKKDRKSP 290
           +  +   LP A E +     +  R  T+ +      +E K D++A   LL   KKD  +P
Sbjct: 333 ALCDGDQLPKALEVLSEMKAWGLRPNTITYSILSVASERKDDLEAGLMLLSQAKKDCVAP 392

Query: 291 DVYI 294
            + +
Sbjct: 393 TLIM 396


>gi|384485437|gb|EIE77617.1| hypothetical protein RO3G_02321 [Rhizopus delemar RA 99-880]
          Length = 1080

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQM 102
           N+++     Q      +  Y+ + L G  P  + + SL++G+ K +     D     D+ 
Sbjct: 709 NSILIGYAQQGDMLNAKKYYEQIKLMGRYPDGNGYASLLLGSAKCATDEATDALLIYDEA 768

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K +   P    YN +IS   K +  + A+++FEEMK++ + PN  TY  +++AC  AG  
Sbjct: 769 KRHDVKPTTFFYNVVISKLAKARKLESAMKLFEEMKQFNIAPNSITYGAIISACVRAGSE 828

Query: 163 DPVYAIVRDMTAAGA 177
                +  DM A+ +
Sbjct: 829 TLACKLFNDMLASSS 843


>gi|341606955|gb|AEK83580.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 206

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 17  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 76

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 77  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGR 134

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 135 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 185


>gi|384253709|gb|EIE27183.1| hypothetical protein COCSUDRAFT_38919 [Coccomyxa subellipsoidea
           C-169]
          Length = 675

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   YNT + + +          V   M  DG  PT  ++ SLIV   K  ++  
Sbjct: 268 RGCQGNEHTYNTYIKAASYSGDVERALKVLPQMAADGCAPTPAVWGSLIVACGKSPKVAP 327

Query: 95  TFF-----------FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK 143
             F              QM A+G  P V   N L++ C  C   ++A+ I+  MK   V+
Sbjct: 328 QPFGMARQVESALGLWRQMAASGTTPTVDNCNALLTACIDCDQGERALDIYRSMKDLGVE 387

Query: 144 PNGQTYVCLLNACAA-------AGQLDPVYAIVRDMTAAGAGLDK 181
           P+  TY   + AC         + QLD  + ++ DM AAG   D+
Sbjct: 388 PDLVTYNLAVRACGGQSGSKLRSAQLDQAFQLLADMRAAGVAPDQ 432



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTM---KGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           ++  M   G  PT D  ++L+   +   +G R  D +     MK  G  PD+  YN  + 
Sbjct: 342 LWRQMAASGTTPTVDNCNALLTACIDCDQGERALDIY---RSMKDLGVEPDLVTYNLAVR 398

Query: 120 VCGKCKNS-------DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            CG    S       DQA ++  +M+   V P+ QT   +L  CA AG      A+  ++
Sbjct: 399 ACGGQSGSKLRSAQLDQAFQLLADMRAAGVAPDQQTVTSMLALCAQAGAGRRALALYEEV 458

Query: 173 TAAGAGLDKFCYAGLITA 190
             +G  +D    + LI A
Sbjct: 459 KDSGIRIDVALQSALIAA 476



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRLQDT-----FFFRDQMKANGFLPDVAVY 114
           D+Y  M   GV+P    ++  +   G   GS+L+       F     M+A G  PD    
Sbjct: 376 DIYRSMKDLGVEPDLVTYNLAVRACGGQSGSKLRSAQLDQAFQLLADMRAAGVAPDQQTV 435

Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
             ++++C +     +A+ ++EE+K   ++ +      L+ A  + G  +   A+ R M 
Sbjct: 436 TSMLALCAQAGAGRRALALYEEVKDSGIRIDVALQSALIAALGSEGLAEDALAVFRKMV 494



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           DM   GV P +    S++    +    +      +++K +G   DVA+ + LI+  G   
Sbjct: 422 DMRAAGVAPDQQTVTSMLALCAQAGAGRRALALYEEVKDSGIRIDVALQSALIAALGSEG 481

Query: 126 NSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            ++ A+ +F +M      +KPN  TY  +   C  AG +       R M   G
Sbjct: 482 LAEDALAVFRKMVWGPRRMKPNEHTYRLVTRICREAGLVKEALHAYRGMRRMG 534


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 25/301 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R  + +   YN ++ +   + +FF   ++YD+M+  G+ P    + S+I G  K 
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQ 373

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           +RL         M   G  P++  +N LI   CG  K  D  + +  EM +  +  +  T
Sbjct: 374 NRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-KRIDDGMELLHEMTETGLVADTTT 432

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  L++     G L+    ++++M ++G   D      L+    +     D  A ++ ++
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD--ALEMFKV 490

Query: 209 VEQSKGWSSVETSGNNAE--------------NEMMGVSKEELYNLPTAEYVHRRGGFLS 254
           +++SK         N  E              NE   +  EELY     E  HR  G + 
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE----EMPHR--GIVP 544

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             +T   +    C + +  +A +    M  K   SP+V      I  Y  +G +D+G ++
Sbjct: 545 DTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF-SPNVVTFTTLINGYCKAGRVDDGLEL 603

Query: 315 F 315
           F
Sbjct: 604 F 604



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN +++ L ++ +F    ++Y++M   G+ P    + S+I G  K SRL +     
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M +  F P+V  +  LI+   K    D  + +F EM +  +  N  TY+ L+      
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G ++    I ++M ++G   D      ++T   +K
Sbjct: 630 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK 664



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 163/385 (42%), Gaps = 23/385 (5%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D MM DG+QPT+  + +++ G  K G  +      
Sbjct: 183 NVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLL 242

Query: 99  RDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           R   + +  +P+V +Y+ +I S+C   ++SD A  +F EM++  + P+  TY  ++    
Sbjct: 243 RKMEEISHIIPNVVIYSAIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE--LVEQSK 213
           ++G+      ++++M       D   Y  LI A     K   A++   +++   ++  + 
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
            +SS+   G   +N +   + E ++      Y+    G    L+T   +    C   +  
Sbjct: 362 TYSSM-IDGFCKQNRL--DAAEHMF------YLMATKGCSPNLITFNTLIDGYCGAKRID 412

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
             ME L EM +    + D       I  +   GD++    + ++ I S   P      TL
Sbjct: 413 DGMELLHEMTETGLVA-DTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 334 VEGAMFGYTPKG----MQLAQDTLVNMNSRNIF--LSPRMGSDLLLVAAGEKSGGYTTAN 387
           ++G       K      ++ Q +  ++++ + F  + P + +  +L++     G +  A 
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            +++ M  R I P      +  +GL
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGL 556



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 69  LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS- 127
            +GV+P    ++ LI G +   +  +     ++M   G +PD   Y+ +I   G CK S 
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID--GLCKQSR 561

Query: 128 -DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
            D+A ++F+ M      PN  T+  L+N    AG++D    +  +M   G   +   Y  
Sbjct: 562 LDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 187 LITA 190
           LI  
Sbjct: 622 LICG 625



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 97/242 (40%), Gaps = 27/242 (11%)

Query: 106 GFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           G  PDV  +N L+   G C      +A+ +F +M +   +PN  T+  L+N     G++ 
Sbjct: 144 GLHPDVVTFNTLLH--GLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIV 201

Query: 164 PVYAIVRDM---------TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
              A++  M            G  +D  C  G   +  + + + ++ +  I  +V  S  
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAI 261

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
             S+   G +++ + +    +E              G    L T   +    C+  +   
Sbjct: 262 IDSLCKDGRHSDAQNLFTEMQE-------------KGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           A + L EML++ + SPDV      I  ++  G      +++++ +     P    Y++++
Sbjct: 309 AEQLLQEMLER-KISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367

Query: 335 EG 336
           +G
Sbjct: 368 DG 369


>gi|399107190|gb|AFP20359.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 190


>gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 459

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 32/248 (12%)

Query: 17  ALGRRFFVTSAGAEEYARRNY--ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            LG   FV  A A  Y  + Y    +   YNT++ +L     F   R + D M L G + 
Sbjct: 174 CLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRY 233

Query: 75  TRDLFHSLIV-------GTMKGSR-------LQDTFFFRDQMKANGFLPDVAVYNYLISV 120
             D +   I+       G   G R        +    FR+ M   GF+PDV  YN LI  
Sbjct: 234 PPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFRE-MLFRGFVPDVVTYNCLIDG 292

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           C K     +A+ +FE+MK     PN  TY   +   +   +++    ++R M   G G+ 
Sbjct: 293 CCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKMGHGVP 352

Query: 181 -KFCYAGLITA--HTNKIPRADDTATKIIE--LVEQSKG----WSSVETSGNNAENEMMG 231
               Y  LI A   T +   A D   +++E  LV +       W ++ + G      M G
Sbjct: 353 GSSTYTPLIHALVETRRAAEARDLLVEMVEAGLVPREYTYKLVWDALSSEG------MAG 406

Query: 232 VSKEELYN 239
              EEL+ 
Sbjct: 407 TLDEELHK 414


>gi|194690470|gb|ACF79319.1| unknown [Zea mays]
          Length = 671

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 155/385 (40%), Gaps = 26/385 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            A  YN V+ ++  + R  + R +Y+ M+ DGV P    +++LI G     +++      
Sbjct: 130 TALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVF 189

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK +G  PDV  YN L++   +  + + A ++F+EM     + N  +Y  ++      
Sbjct: 190 GDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKGYVEG 249

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +++   A+  +M   G  L +  +A L+    +   R  +    + ++ E+        
Sbjct: 250 NRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDMAERRL------ 303

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT---VYHVAFHA-CAELKDVQA 275
           T  + +    +  +  +  +L  A  VH + G    +L     Y V     CA  K   A
Sbjct: 304 TPKDKSVFLRLVTTLCKAGDLDGALEVHWKSGQFKHVLVDPRQYGVLMEGLCAGGKCETA 363

Query: 276 METLLEMLKK----DRKSPDVYIVMQN-IRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
           +E L E+++K      KSP +     N +  +L S       + F   +  +       +
Sbjct: 364 IEVLDELMEKGTLLSPKSPVLEASAYNPVIEFLCSNGSTAKAETFFRQLMKKGVDDKAAF 423

Query: 331 ATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
            +L+ G      P+    AQ+ L  M  R +   P   S  LLV +  K      A    
Sbjct: 424 NSLIRGHAKEGVPEA---AQEILAIMTRREVPTDPE--SHALLVDSFLKKNEPADAKTAL 478

Query: 391 DLMQARKITPSLPAV-----EAYYN 410
           D M  +   PS PA+     EA +N
Sbjct: 479 DSMMQQGHLPS-PALFKSVMEALFN 502



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 9/154 (5%)

Query: 28  GAEEYARRNY--------ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           G E  ARR Y        A + S YNT++      ++      V+ DM   GV P    +
Sbjct: 145 GREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTY 204

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           ++L+   ++   L+      D+M   G   +   YN +I    +    ++A+ +F EM +
Sbjct: 205 NTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAE 264

Query: 140 YEVKPNGQTYVCLLNA-CAAAGQLDPVYAIVRDM 172
             ++ + +T+  L+   C   G++      V DM
Sbjct: 265 KGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDM 298


>gi|299471432|emb|CBN79384.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 54/126 (42%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           + M  + + P    F++ I       +    F    +MK  G  PD   YN ++  CG  
Sbjct: 227 ETMREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYNGVLGACGNA 286

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
                A+R+ E+M++  V PN   Y   ++AC  AG+     A++  M  AG   D  CY
Sbjct: 287 GEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACY 346

Query: 185 AGLITA 190
              I A
Sbjct: 347 NAAIDA 352



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 44  YNTVVTSLTSQ---RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           YN+ + +  ++   RR  +L ++   M  DG+ P +  + + I         ++   F +
Sbjct: 171 YNSCLAACKAKGDLRRAVVLLEI---MREDGIDPDQRSYSAAIATAGIRGLWEEVQGFLE 227

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            M+     PD   +N  I         D A  +  EMK   + P+  +Y  +L AC  AG
Sbjct: 228 TMREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYNGVLGACGNAG 287

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +      ++ DM  AG   + + Y+  + A
Sbjct: 288 EWKAALRLLEDMRQAGVTPNAYNYSAAMDA 317



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/127 (18%), Positives = 57/127 (44%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ D+M+  G++P +    +++       + +       +++++GF P +  Y  ++   
Sbjct: 444 ELLDEMIAAGLRPNKIHCDTMVAAWSAEGKPERAVALMRRLQSHGFEPSLYTYETIVWGF 503

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K  N   A+R    +    ++P+ +++   + AC+ AG  +   A++ DM   G    K
Sbjct: 504 AKEANWAAAVRFLAYVLGLGLQPSVRSWDAAIAACSQAGHWERALALLADMRKQGIRPSK 563

Query: 182 FCYAGLI 188
             Y   +
Sbjct: 564 VTYTAAV 570



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/129 (16%), Positives = 55/129 (42%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT + ++    +  +   +  +M  +G+ P +  ++ ++         +      + M+
Sbjct: 241 FNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLEDMR 300

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P+   Y+  +  CGK     +A+ +   M+K  V+ +   Y   ++AC+ A    
Sbjct: 301 QAGVTPNAYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWT 360

Query: 164 PVYAIVRDM 172
               ++++M
Sbjct: 361 AAVQLLQEM 369


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 123/315 (39%), Gaps = 41/315 (13%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQA 130
           +P    ++ L+ G  + S+    F    ++  NG LPD   YN L+   G CK    + A
Sbjct: 379 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVD--GFCKEGQLNMA 436

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             IF  M    ++P+G T+  L++     G+L+    I+  M   G  LD+  +  LI  
Sbjct: 437 FNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDG 496

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGN-----------NAENEMMGVSKEELYN 239
           H  KI +A D       +VE ++  ++  T              N  N M+G  K   Y 
Sbjct: 497 HC-KIGKAKDVCFLFENMVE-NRCLTTAHTFNCFLDALGKDYKLNEANAMLG--KMMKYG 552

Query: 240 LPTAEYVHR-------RGG-------FLSRL--------LTVYHVAFHACAELKDVQAME 277
           L  +   H        R G        L R+        +  Y +  +       V+  E
Sbjct: 553 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 612

Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337
           T+L  +     SP+ +     ++ ++ +G +D   ++    + +   P + +Y+ L+ G 
Sbjct: 613 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 672

Query: 338 MFGYTPKGMQLAQDT 352
           +   T  G +    T
Sbjct: 673 VLSNTAIGARALSST 687



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++++M+ +    T   F+  +    K  +L +      +M   G +P V  +  LI   G
Sbjct: 509 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIE--G 566

Query: 123 KCKNSDQAI--RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C+  + A+  ++ E MK+    PN  TY  ++N     G+++    I+  M++ G   +
Sbjct: 567 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN 626

Query: 181 KFCYAGLITAHTN--KIPRADDTATKIIE 207
            F YA L+ AH    ++ RA    + +++
Sbjct: 627 HFTYAVLVKAHVKAGRLDRAFQIVSTMVK 655



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 4/152 (2%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  +N  + +L    +      +   MM  G+ P+      LI G  +      +    +
Sbjct: 522 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 581

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           +MK  G  P+V  Y Y I + G C N   ++A  I   M  + V PN  TY  L+ A   
Sbjct: 582 RMKQAGCSPNV--YTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVK 639

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           AG+LD  + IV  M   G   +   Y+ L++ 
Sbjct: 640 AGRLDRAFQIVSTMVKNGCQPNSHIYSALLSG 671



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 46/107 (42%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           +  +P    +  LI G  +  RL++ F  + +M   G  P    Y  LI        +D+
Sbjct: 236 ENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDK 295

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           A+++ +EM      PN  TY  L++     G+++    + R M   G
Sbjct: 296 AMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 342



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++  L      F+   VY  M+ +G       + +++    K   +Q    F  ++ 
Sbjct: 139 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVL 198

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAG 160
             GF  D  V   L  V   C+  D  +A R+FE+M K E  +PN  TY  L++    AG
Sbjct: 199 RLGFGLDTHVCTSL--VLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAG 256

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN------KIPRADDTATK 204
           +L+  + + ++M   G       Y  LI A  +       +   D+ ATK
Sbjct: 257 RLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 306



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 58/150 (38%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +  ++  L    R      +   M+  G+      F +LI G  K  + +D  F  + M 
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 514

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            N  L     +N  +   GK    ++A  +  +M KY + P+  T+  L+     AG+  
Sbjct: 515 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 574

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
               ++  M  AG   + + Y  +I    N
Sbjct: 575 LSLKMLERMKQAGCSPNVYTYTIIINGLCN 604



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D++   GV PT DL++ L+VG  K  R+ +       M  +G  PD A+ + +   C 
Sbjct: 721 IRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCK 779

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            CK  D  +   + +   +  P+  +Y  +++     G++     +V D+ 
Sbjct: 780 TCK-YDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLV 829


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 121/314 (38%), Gaps = 48/314 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +RR      + ++M   GV P    F +LI G     +L       D M 
Sbjct: 308 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 367

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                PD+  YN LI   G C+    D+A  ++++M   E+ PN  TY  L+++    GQ
Sbjct: 368 NQRLRPDIVTYNTLID--GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 425

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           ++  +  + +M   G   +   Y  +I  +                        S   + 
Sbjct: 426 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCR----------------------SGNVSK 463

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
           G     +MM V+K                  +S  L  Y+   H   +   +     LL 
Sbjct: 464 GQKFLQKMM-VNK------------------VSPDLITYNTLIHGYIKEDKMHDAFKLLN 504

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE-LYATLVEGAMF- 339
           M++K++  PDV      I  +   G++     +FE  +C++   P    Y +++ G +  
Sbjct: 505 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK-MCAKGIEPDRYTYMSMINGHVTA 563

Query: 340 GYTPKGMQLAQDTL 353
           G + +  QL  + L
Sbjct: 564 GNSKEAFQLHDEML 577



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 145/353 (41%), Gaps = 19/353 (5%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D M+  G++P    ++S++ G  +       +    +M   G  PDV  +  LI    
Sbjct: 152 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 211

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +    ++A++I++EM+   +KP+  ++ CL+   A  G++D   A +R+M   G   D  
Sbjct: 212 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 271

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            Y  +I         +D  A ++ + +        V T  N   N   G+ KE    L  
Sbjct: 272 IYTMVIGGFCRAGLMSD--ALRVRDEMVGCGCLPDVVTY-NTLLN---GLCKER--RLLD 323

Query: 243 AEYV---HRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
           AE +    R  G    L T   +    C E K  +A++    ML + R  PD+      I
Sbjct: 324 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPDIVTYNTLI 382

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNS 358
                 GD+D  + +++D    E FP    Y+ L++     +  KG ++ A   L  M +
Sbjct: 383 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID----SHCEKGQVEDAFGFLDEMIN 438

Query: 359 RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           + I   P + +   ++    +SG  +        M   K++P L       +G
Sbjct: 439 KGIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 489



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 64/147 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   YN+++            +     MM++ V P    +++LI G +K 
Sbjct: 434 DEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE 493

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ D F   + M+     PDV  YN LI+      N  +A  IFE+M    ++P+  TY
Sbjct: 494 DKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 553

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + ++N    AG     + +  +M   G
Sbjct: 554 MSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 136/349 (38%), Gaps = 11/349 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G++P    F  LI    +  ++     +  +M+  G +PD  +Y  +I    
Sbjct: 222 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC 281

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +      A+R+ +EM      P+  TY  LLN      +L     ++ +M   G   D  
Sbjct: 282 RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 341

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
            +  LI  H   I    D A ++ + +   +    + T     +        ++  +L  
Sbjct: 342 TFTTLI--HGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL-- 397

Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
            + +H R  F + +     +  H C + +   A   L EM+ K    P++      I+ Y
Sbjct: 398 WDDMHSREIFPNHVTYSILIDSH-CEKGQVEDAFGFLDEMINKG-ILPNIMTYNSIIKGY 455

Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF 362
             SG++  G K  +  + ++  P    Y TL+     GY  +        L+NM  +   
Sbjct: 456 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIH----GYIKEDKMHDAFKLLNMMEKEK- 510

Query: 363 LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           + P + +  +L+      G    A +I++ M A+ I P      +  NG
Sbjct: 511 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 559


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R  + +   Y++++ +L   +      +V   M+ +GV P    ++S++ G     
Sbjct: 221 EMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSE 280

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++   F  +M+++G  PDV  YN L+    K   S +A +IF+ M K  ++P+  TY 
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYC 340

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            LL   A  G L  ++A++  M   G   D   +  LI A+  +
Sbjct: 341 TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 24/324 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    R    R ++D M   G++P    + +L+ G      L +     D M 
Sbjct: 304 YNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMV 363

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  PD  V+N LI    K +  D+A+ +F +M+++ + PN  TY  ++     +G +D
Sbjct: 364 RNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD 423

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI-PRADDTATKIIELVEQSKGWSSV--ET 220
                   M   G   +   Y  LI  H+  I  + D     I+E++++    +++   +
Sbjct: 424 DAMLYFEQMIDEGLTPNIIVYTSLI--HSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
             ++   E   +  E+L++L        R G    ++T   +    C   K  +A + L 
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMV------RIGVKPNVITYSTLIDGYCLAGKMDEATKLLS 535

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-- 338
            M     K PD       I  Y     +D+   +F++ + S   P    Y  +++G    
Sbjct: 536 SMFSVGMK-PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594

Query: 339 ----------FGYTPKGMQLAQDT 352
                      G T  G QL   T
Sbjct: 595 RRTAAAKELYVGITKSGTQLELST 618



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 73/165 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +   +R    + + Y T++    ++     +  + D M+ +G+ P   +F+ LI    K 
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +      +M+ +G  P+V  Y  +I +  K  + D A+  FE+M    + PN   Y
Sbjct: 385 EKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY 444

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+++     + D    ++ +M   G  L+   +  +I +H  +
Sbjct: 445 TSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKE 489



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   +N+++ S   + R      ++D M+  GV+P    + +LI G     
Sbjct: 466 EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAG 525

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +       M + G  PD   YN LI+  G C+ S  D A+ +F+EM    V PN  T
Sbjct: 526 KMDEATKLLSSMFSVGMKPDCVTYNTLIN--GYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 149 YVCLL 153
           Y  +L
Sbjct: 584 YNIIL 588



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y +++ SL    ++    ++  +M+  G+      F+S+I    K  R+ ++    
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M   G  P+V  Y+ LI         D+A ++   M    +KP+  TY  L+N     
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADD 200
            ++D   A+ ++M ++G   +   Y  ++    HT +   A +
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKE 602



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 59/157 (37%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +   Y TV+     +         Y +M+   + P    + S+I    KG  +     
Sbjct: 193 APDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAME 252

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M  NG +P+   YN ++      +   +AI   ++M+   V+P+  TY  L++   
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLC 312

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G+      I   MT  G   D   Y  L+  +  K
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATK 349



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 139/365 (38%), Gaps = 24/365 (6%)

Query: 53  SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112
           SQ    LL  + DD    G  P    + ++I G  K       +    +M      PDV 
Sbjct: 174 SQEALELLHMMADDRG-GGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV 232

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+ +I+   K +  D+A+ +   M K  V PN  TY  +L+   ++ Q       ++ M
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-----SGNNAEN 227
            + G   D   Y  L+  +  K  R+ + A KI + + +      + T      G   + 
Sbjct: 293 RSDGVEPDVVTYNSLMD-YLCKNGRSTE-ARKIFDSMTKRGLEPDIATYCTLLQGYATKG 350

Query: 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDR 287
            +  V    L +L     +H      + L+  Y       A+ + V     +   +++  
Sbjct: 351 AL--VEMHALLDLMVRNGIHPDHHVFNILICAY-------AKQEKVDEAMLVFSKMRQHG 401

Query: 288 KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGM 346
            +P+V      I     SG +D+    FE  I     P   +Y +L+    +F    K  
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDK-- 459

Query: 347 QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVE 406
             A++ ++ M  R I L+    +   ++ +  K G    +  ++DLM    + P++    
Sbjct: 460 --AEELILEMLDRGICLNTIFFNS--IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 407 AYYNG 411
              +G
Sbjct: 516 TLIDG 520


>gi|449447683|ref|XP_004141597.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           F LR V+ DM+  G+QP    F++LI    K   +   F   + MK+ G  PDV  +N L
Sbjct: 343 FALR-VFQDMLKCGLQPNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNAL 401

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           +    K      AI +FE +K+ +V+ N   Y  +L +C+  G  +    I+ +M  +G 
Sbjct: 402 LGALYKANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSGL 461

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
            +    Y  ++TA   ++ R  + A ++ E +   K
Sbjct: 462 SISTSSYNIVMTA--CEMARKPEIALQVYERMVHQK 495



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 19/301 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM----KGSRLQDT 95
           +A  YNT+++       +      +  M  +G   TR + +SL+V T     +     DT
Sbjct: 254 DAIVYNTMISICGKDNNWVEAERTWRLMEKNGCSATR-ITYSLLVSTFVRCNQNELAIDT 312

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +    +M  N F P       +I    K    D A+R+F++M K  ++PN  ++  L+NA
Sbjct: 313 YV---KMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINA 369

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
              A ++   +++   M + G   D + +  L+ A   K  R  D A  + E V++ K  
Sbjct: 370 LGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGA-LYKANRYSD-AIHLFEFVKREK-- 425

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
             V+ + +     +M  SK  L+              LS   + Y++   AC   +  + 
Sbjct: 426 --VQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVMTACEMARKPEI 483

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              + E +   + +PD +  +  IRC +     D       + + ++  P   +Y  +++
Sbjct: 484 ALQVYERMVHQKHTPDTFTHLSLIRCCIWGSLWDE-----VELLLNKSAPDVSVYNVVIQ 538

Query: 336 G 336
           G
Sbjct: 539 G 539



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 7/115 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S YN V+T+    R+  +   VY+ M+     P      SLI   + GS   +     
Sbjct: 464 STSSYNIVMTACEMARKPEIALQVYERMVHQKHTPDTFTHLSLIRCCIWGSLWDEV---- 519

Query: 100 DQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            ++  N   PDV+VYN +I  +C + K SD A +++ +M++  ++P+G+T   +L
Sbjct: 520 -ELLLNKSAPDVSVYNVVIQGMCLRGK-SDLAKKLYTKMRENGIQPDGKTRALML 572


>gi|399107200|gb|AFP20364.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 190


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 8/254 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +M   G+ P   ++++ + G +K    +       +MK      +   +  +I+V G
Sbjct: 232 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 291

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K K    ++++F EMK    KPN  TY  L+NA A  G  +    +  +M  AG   D +
Sbjct: 292 KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 351

Query: 183 CYAGLITAHTNK-IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
            Y  L+ A++   +P+    A++I  L+ Q  G      S N   +      +  L+   
Sbjct: 352 AYNALMEAYSRAGLPQG---ASEIFSLM-QHMGCEPDRASYNILVD---AYGRAGLHEDA 404

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
            A +   +   +S  +  + +   A A   +    E ++  L K   +PD + +   +  
Sbjct: 405 EAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNA 464

Query: 302 YLHSGDIDNGHKVF 315
           Y  +G +D+  ++F
Sbjct: 465 YARAGRLDDMERLF 478



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 124/312 (39%), Gaps = 21/312 (6%)

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
           + F PD+  YN LI   GK +  ++A  I+  + + +  P   TY  LL A   AG L  
Sbjct: 169 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHR 228

Query: 165 VYAIVRDMTAAGAGLDKFCYA----GLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
              ++ +M   G   +   Y     GL+ A      R  + A ++ + +++ +  ++ ET
Sbjct: 229 AEGVISEMREHGIPPNATVYNAYLDGLLKA------RCTEKAVEVYQRMKRERCRANTET 282

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
                   + G +K+ + ++     +   G      +  Y    +A A     +  E + 
Sbjct: 283 F--TLMINVYGKAKQPMSSMKVFNEMKSIG--CKPNICTYTALVNAFAREGLCEKAEEVF 338

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG 340
           E +++    PDVY     +  Y  +G      ++F         P    Y  LV+     
Sbjct: 339 EEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVD----A 394

Query: 341 YTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
           Y   G+ + A+     +  R   +SP M S +LL+AA  +SG  T    +   +    +T
Sbjct: 395 YGRAGLHEDAEAVFEELKQRG--MSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLT 452

Query: 400 PSLPAVEAYYNG 411
           P   A+ A  N 
Sbjct: 453 PDTFALNAMLNA 464



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V +   +       +V+++M   G +P    +++L+    +    Q      
Sbjct: 314 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 373

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+  G  PD A YN L+   G+    + A  +FEE+K+  + P  ++++ LL A A +
Sbjct: 374 SLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARS 433

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           G       ++  +  +G   D F    ++ A+  +  R DD
Sbjct: 434 GNATRCEEVMAQLHKSGLTPDTFALNAMLNAYA-RAGRLDD 473



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 65/152 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           NA+ YN  +  L   R      +VY  M  +  +   + F  +I    K  +   +    
Sbjct: 244 NATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVF 303

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK+ G  P++  Y  L++   +    ++A  +FEEM++   +P+   Y  L+ A + A
Sbjct: 304 NEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRA 363

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           G       I   M   G   D+  Y  L+ A+
Sbjct: 364 GLPQGASEIFSLMQHMGCEPDRASYNILVDAY 395


>gi|154415374|ref|XP_001580712.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914932|gb|EAY19726.1| hypothetical protein TVAG_433220 [Trichomonas vaginalis G3]
          Length = 277

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%)

Query: 41  ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           A  YN  +   +  +++ L    Y+ M+  GV P    ++++I   +K  +L D F   +
Sbjct: 27  ALHYNQEIARFSKSKQYDLACASYERMIGAGVPPDVVTYNTMINVYVKSQKLTDAFRLFE 86

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +MK +G  P +  Y  LI  CGKC N   A+ ++E++K+  ++ N   +  +LNA    G
Sbjct: 87  EMKFHGINPTIITYTSLIDGCGKCNNFSHAMMLYEDVKRSGIELNMHFFNAILNAGLLNG 146

Query: 161 QLDPVYAIVRDM 172
            L  +  ++ D+
Sbjct: 147 NLYIIDTVLADV 158



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G  PDV  YN +I+V  K +    A R+FEEMK + + P   TY  L++ C   
Sbjct: 51  ERMIGAGVPPDVVTYNTMINVYVKSQKLTDAFRLFEEMKFHGINPTIITYTSLIDGCGKC 110

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                   +  D+  +G  L+   +  ++ A
Sbjct: 111 NNFSHAMMLYEDVKRSGIELNMHFFNAILNA 141


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 1/183 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  RR +  +   Y TV+ +   QR F  + +V D M   G  P    +  ++    K 
Sbjct: 209 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 268

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE-EMKKYEVKPNGQT 148
            R ++      +MK++G  PD   YN LI++ GK  +  +A ++F  EM    V  N  T
Sbjct: 269 ERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLAT 328

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  +++     G+ D    ++++M A     D   Y  L+    ++  +AD     + EL
Sbjct: 329 YNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSEL 388

Query: 209 VEQ 211
             +
Sbjct: 389 TSK 391



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 1/149 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++  L  +R+  + R+V+  ++   + P    F+  + G     R+ +  +  
Sbjct: 150 NTETMNVLLDVLCKERKIEVAREVFA-VLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTI 208

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  GF P V  Y  ++    K +N  +   + + M      PN  TY  ++ + A  
Sbjct: 209 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 268

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + +   ++   M ++G   D   Y  LI
Sbjct: 269 ERFEEALSVSHRMKSSGCKPDTLFYNSLI 297



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  +N  V    S RR        ++M   G  P+   + +++    K    +  +   
Sbjct: 184 DAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVL 243

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M + G  P+V  Y  +++   KC+  ++A+ +   MK    KP+   Y  L+N    +
Sbjct: 244 DSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKS 303

Query: 160 GQL----------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           G L           P+  +  ++      +  FCY G          R DD    + E+ 
Sbjct: 304 GHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYG----------RDDDALNVLKEME 353

Query: 210 EQS 212
            QS
Sbjct: 354 AQS 356


>gi|308081764|ref|NP_001183223.1| uncharacterized protein LOC100501610 [Zea mays]
 gi|238010158|gb|ACR36114.1| unknown [Zea mays]
          Length = 289

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 1/170 (0%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
            NA  YN ++  +  +  F   R V D+M+  GV+PT   F++L+    +   L      
Sbjct: 12  TNAVSYNIILKGVCHRDGFSGARVVLDEMLARGVRPTVVTFNTLVGSACREGELAAAERL 71

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D+M   G  P+   Y  L+         D A ++  +M+  + +P+   Y  L++ACAA
Sbjct: 72  VDEMTRRGVAPNAVTYALLMQGLCDAGRYDDAKKLLFDMEYRDCQPDVANYGVLMSACAA 131

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
            G  D V  ++ DM       D   Y  LI    +   R D+    ++E+
Sbjct: 132 CGDADGVKGLISDMRKRKMKPDDASYNVLIRCLCDA-GRVDEAHRALVEM 180



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R        +NT+V S   +        + D+M   GV P    +  L+ G    
Sbjct: 38  DEMLARGVRPTVVTFNTLVGSACREGELAAAERLVDEMTRRGVAPNAVTYALLMQGLCDA 97

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  D       M+     PDVA Y  L+S C  C ++D    +  +M+K ++KP+  +Y
Sbjct: 98  GRYDDAKKLLFDMEYRDCQPDVANYGVLMSACAACGDADGVKGLISDMRKRKMKPDDASY 157

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
             L+     AG++D  +  + +M
Sbjct: 158 NVLIRCLCDAGRVDEAHRALVEM 180



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 53/148 (35%), Gaps = 1/148 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  RR  A NA  Y  ++  L    R+   + +  DM     QP    +  L+      
Sbjct: 73  DEMTRRGVAPNAVTYALLMQGLCDAGRYDDAKKLLFDMEYRDCQPDVANYGVLMSACAAC 132

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQT 148
                       M+     PD A YN LI         D+A R   EM+ K    P+  T
Sbjct: 133 GDADGVKGLISDMRKRKMKPDDASYNVLIRCLCDAGRVDEAHRALVEMQLKDGTAPSAAT 192

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           Y  LL+ C  A        +   M A+G
Sbjct: 193 YRVLLDGCCEARDFHLGLRVFNAMLASG 220


>gi|399107198|gb|AFP20363.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 190


>gi|341605743|gb|AEK82974.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605753|gb|AEK82979.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605831|gb|AEK83018.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + R Y  N   Y++++  L   +R  L   V   M+ +   P   ++  +I G  K  + 
Sbjct: 698 SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKT 757

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            + +     M+  G  P+V  Y  +I   GK    D+ + +  +M      PN  TY  L
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 153 LNACAAAGQLDPVYAIVRDM 172
           +N C AAG LD  + ++ +M
Sbjct: 818 INHCCAAGLLDDAHQLLDEM 837



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V  L    +    RD+ D M ++G +P   ++ +LI G  K  +L +     
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVF 694

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G+ P+V  Y+ LI    K K  D A+++   M +    PN   Y  +++     
Sbjct: 695 TKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKV 754

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           G+ D  Y ++  M   G   +   Y  +I     K  + D    K +EL+ Q
Sbjct: 755 GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF-GKAGKVD----KCLELMRQ 801



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 62/153 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    + +   L    +F     +  +MM  G  P    +  +I      S++ + F   
Sbjct: 444 NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLF 503

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK+N  +PDV  Y  LI    K     QA + F+EM +    PN  TY  L++A   A
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            ++     +   M + G   +   Y  LI  H 
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 121/327 (37%), Gaps = 60/327 (18%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++     +R+    + +   M+ +G  P+R +F+SLI    +       +   
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 100 DQMKANGFLPDVAVYNYLI-SVCGKCKNS-----DQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +M   G  P   VYN LI  +CG  K       + A + + EM    V  N      L 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD------------- 200
                AG+ +  Y+I+R+M + G   D   Y+ +I    N   + D+             
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA-SKVDNAFLLFEEMKSNHV 511

Query: 201 -----TATKIIE------LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
                T T +I+      L++Q++ W           +EM+                  R
Sbjct: 512 VPDVFTYTILIDSFCKVGLLQQARKWF----------DEMV------------------R 543

Query: 250 GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
            G    ++T Y    HA  + + + +   L EM+  +   P+V      I  +  SG I+
Sbjct: 544 DGCAPNVVT-YTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEG 336
              +++     +   P  ++Y  + +G
Sbjct: 603 KACQIYARMRGNADIPDVDMYFKIDDG 629



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R   A N   Y  ++ +    R+     ++++ M+ +G  P    + +LI G  K 
Sbjct: 539 DEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKS 598

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVY----------------NYLISVCGKCKNSDQAIRI 133
            +++       +M+ N  +PDV +Y                  L+    K     +A  +
Sbjct: 599 GQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDL 658

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + M     +PN   Y  L++     G+LD    +   M+  G G + + Y+ LI
Sbjct: 659 LDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLI 713



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
           E   + +  + S Y+ V+  L +  +    FLL   +++M  + V P    +  LI    
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLL---FEEMKSNHVVPDVFTYTILIDSFC 526

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           K   LQ    + D+M  +G  P+V  Y  LI    K +    A  +FE M      PN  
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVV 586

Query: 148 TYVCLLNACAAAGQLDP---VYAIVR 170
           TY  L++    +GQ++    +YA +R
Sbjct: 587 TYTALIDGHCKSGQIEKACQIYARMR 612



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 21/203 (10%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE    +   +   Y  ++ S          R  +D+M+ DG  P    + +LI   +K 
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKK-------- 139
            ++       + M + G +P+V  Y  LI   G CK+   ++A +I+  M+         
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALID--GHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 140 --YEV------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +++       PN  TY  L++    A ++     ++  M+  G   +   Y  LI   
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 192 TNKIPRADDTATKIIELVEQSKG 214
             K+ + D+      ++ E+  G
Sbjct: 682 C-KVGKLDEAQMVFTKMSERGYG 703


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 1/183 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  RR +  +   Y TV+ +   QR F  + +V D M   G  P    +  ++    K 
Sbjct: 243 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 302

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE-EMKKYEVKPNGQT 148
            R ++      +MK++G  PD   YN LI++ GK  +  +A ++F  EM    V  N  T
Sbjct: 303 ERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLAT 362

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  +++     G+ D    ++++M A     D   Y  L+    ++  +AD     + EL
Sbjct: 363 YNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSEL 422

Query: 209 VEQ 211
             +
Sbjct: 423 TSK 425



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 1/149 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++  L  +R+  + R+V+  ++   + P    F+  + G     R+ +  +  
Sbjct: 184 NTETMNVLLDVLCKERKIEVAREVFA-VLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTI 242

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  GF P V  Y  ++    K +N  +   + + M      PN  TY  ++ + A  
Sbjct: 243 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 302

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + +   ++   M ++G   D   Y  LI
Sbjct: 303 ERFEEALSVSHRMKSSGCKPDTLFYNSLI 331



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  +N  V    S RR        ++M   G  P+   + +++    K    +  +   
Sbjct: 218 DAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVL 277

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M + G  P+V  Y  +++   KC+  ++A+ +   MK    KP+   Y  L+N    +
Sbjct: 278 DSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKS 337

Query: 160 GQL----------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           G L           P+  +  ++      +  FCY G          R DD    + E+ 
Sbjct: 338 GHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYG----------RDDDALNVLKEME 387

Query: 210 EQS 212
            QS
Sbjct: 388 AQS 390


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 4/188 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +  +  N   Y  ++      R       +++DM+  G++P     + ++ G ++  +  
Sbjct: 291 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKS 350

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D       MK+ G  P+V  Y  +I    K  + + AI  F++M    ++P+   Y CL+
Sbjct: 351 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 410

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-KIPRADDTATKIIELVEQS 212
                  +LD VY ++++M   G   D   Y  LI    N K+P   + AT+I   + Q+
Sbjct: 411 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMP---EHATRIYNKMIQN 467

Query: 213 KGWSSVET 220
           +   S+ T
Sbjct: 468 EIEPSIHT 475



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++     Q       + +DDM+  G+QP   ++  LI G     +L   +   
Sbjct: 367 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 426

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+  G  PD   YN LI +    K  + A RI+ +M + E++P+  T+  ++ +   A
Sbjct: 427 KEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMA 486

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              +   A+  +M   G   D   Y  LI
Sbjct: 487 RNYEMGRAVWEEMIKKGICPDDNSYTVLI 515



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF  +A      R+ +A+++  YN++++ L   R+F  +  V ++M   G+        
Sbjct: 180 RFFCWAA-----ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTI 234

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           ++        R +    F + MK   F   V   N L+   G+ K   +A  +F+++K+ 
Sbjct: 235 AMKAFAAAKERKKAVGIF-ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE- 292

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
              PN  TY  LLN       L     I  DM   G   D
Sbjct: 293 RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPD 332


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 13/266 (4%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAI 131
           +P    ++++I G  K +R++      D+MK  GF PDV  +N +I + CGK K  D A+
Sbjct: 41  KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGK-IDLAL 99

Query: 132 RIFEE-MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++FEE +K    KP   TY  L+ A    G +D    ++ +M + G   D F Y  +IT 
Sbjct: 100 KVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTY-NVITR 158

Query: 191 HTNKIPRADDTATKIIELVE--QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
              K  + D    +  E V    S+G      + N     ++   K +      +E   R
Sbjct: 159 GLCKEGKVD----RAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSR 214

Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
             G    ++T Y +   +      ++    L++++K+   +PD Y     I  +   G +
Sbjct: 215 --GCEPNVVT-YSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKL 271

Query: 309 DNGHKVFEDYICSEKFPPAELYATLV 334
           D   +  +  IC    P    Y T++
Sbjct: 272 DMAIEFLDCMICDGFLPDIVNYNTIM 297



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   Y+ +++SL    +     ++   M   G+ P    +  LI    +  
Sbjct: 210 EIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREG 269

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L     F D M  +GFLPD+  YN +++   K  N D A+ IF ++ +    PN  +Y 
Sbjct: 270 KLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYN 329

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +L+A  ++G       ++  M + G   D   Y  LI+ 
Sbjct: 330 TMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISC 369



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + D+M+  G++P    ++ +  G  K  ++   F F   + + G  PDV  YN L+    
Sbjct: 137 LLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALL 196

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                D+  +   E+     +PN  TY  L+++    G+++    +V+ M   G   D +
Sbjct: 197 NQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAY 256

Query: 183 CYAGLITA 190
           CY  LI A
Sbjct: 257 CYDPLIAA 264



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 51/122 (41%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S YNT++++L S    +    +   M+  G+ P    ++SLI    +   + +     
Sbjct: 324 NVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLL 383

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M +  F P++  Y  ++    K    D AI +   M +   +PN  TY  L+     +
Sbjct: 384 ADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFS 443

Query: 160 GQ 161
           G 
Sbjct: 444 GS 445



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 5/160 (3%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRL 92
           R+ ++ +   +N ++ +   + +  L   V+++++ D   +PT   +  LI   +    +
Sbjct: 72  RKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGI 131

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYV 150
            +     D+M + G  PD   YN +    G CK    D+A      +     KP+  TY 
Sbjct: 132 DEALKLLDEMLSRGLEPDTFTYNVITR--GLCKEGKVDRAFEFVRTLNSRGCKPDVITYN 189

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            LL A    G+ D     + ++ + G   +   Y+ LI++
Sbjct: 190 ILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISS 229



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 58/145 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +L          +++  +   G  P    +++++                 QM 
Sbjct: 293 YNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQML 352

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PDV  YN LIS   +    D+AI +  +M     +PN  +Y  +L     A ++D
Sbjct: 353 SKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRID 412

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++  M   G   ++  Y  LI
Sbjct: 413 DAIEVLAAMIENGCQPNETTYTLLI 437


>gi|449525305|ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 3/156 (1%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           F LR V+ DM+  G+QP    F++LI    K   +   F   + MK+ G  PDV  +N L
Sbjct: 343 FALR-VFQDMLKCGLQPNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNAL 401

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           +    K      AI +FE +K+ +V+ N   Y  +L +C+  G  +    I+ +M  +G 
Sbjct: 402 LGALYKANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSGL 461

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
            +    Y  ++TA   ++ R  + A ++ E +   K
Sbjct: 462 SISTSSYNIVMTA--CEMARKPEIALQVYERMVHQK 495



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 19/301 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM----KGSRLQDT 95
           +A  YNT+++       +      +  M  +G   TR + +SL+V T     +     DT
Sbjct: 254 DAIVYNTMISICGKDNNWVEAERTWRLMEKNGCGATR-ITYSLLVSTFVRCNQNELAIDT 312

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +    +M  N F P       +I    K    D A+R+F++M K  ++PN  ++  L+NA
Sbjct: 313 YV---KMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINA 369

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
              A ++   +++   M + G   D + +  L+ A   K  R  D A  + E V++ K  
Sbjct: 370 LGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGA-LYKANRYSD-AIHLFEFVKREK-- 425

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
             V+ + +     +M  SK  L+              LS   + Y++   AC   +  + 
Sbjct: 426 --VQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVMTACEMARKPEI 483

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              + E +   + +PD +  +  IRC +     D       + + ++  P   +Y  +++
Sbjct: 484 ALQVYERMVHQKLTPDTFTHLSLIRCCIWGSLWDE-----VELLLNKSAPDVSVYNVVIQ 538

Query: 336 G 336
           G
Sbjct: 539 G 539



 Score = 45.1 bits (105), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           + S YN V+T+    R+  +   VY+ M+   + P      SLI   + GS   +     
Sbjct: 464 STSSYNIVMTACEMARKPEIALQVYERMVHQKLTPDTFTHLSLIRCCIWGSLWDEV---- 519

Query: 100 DQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
            ++  N   PDV+VYN +I  +C + K SD A +++ +M++  ++P+G+T   +L
Sbjct: 520 -ELLLNKSAPDVSVYNVVIQGMCLRGK-SDLAKKLYTKMRENGIQPDGKTRALML 572


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R  + +   Y++++ +L   +      +V   M+ +GV P    ++S++ G     
Sbjct: 221 EMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSE 280

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++   F  +M+++G  PDV  YN L+    K   S +A +IF+ M K  ++P+  TY 
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYC 340

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            LL   A  G L  ++A++  M   G   D   +  LI A+  +
Sbjct: 341 TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 24/324 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    R    R ++D M   G++P    + +L+ G      L +     D M 
Sbjct: 304 YNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMV 363

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  PD  V+N LI    K +  D+A+ +F +M+++ + PN  TY  ++     +G +D
Sbjct: 364 RNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD 423

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI-PRADDTATKIIELVEQSKGWSSV--ET 220
                   M   G   +   Y  LI  H+  I  + D     I+E++++    +++   +
Sbjct: 424 DAMLYFEQMIDEGLTPNIIVYTSLI--HSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
             ++   E   +  E+L++L        R G    ++T   +    C   K  +A + L 
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMV------RIGVKPNVITYSTLIDGYCLAGKMDEATKLLS 535

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-- 338
            M     K PD       I  Y     +D+   +F++ + S   P    Y  +++G    
Sbjct: 536 SMFSVGMK-PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594

Query: 339 ----------FGYTPKGMQLAQDT 352
                      G T  G QL   T
Sbjct: 595 RRTAAAKELYVGITKSGTQLELST 618



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 73/165 (44%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +   +R    + + Y T++    ++     +  + D M+ +G+ P   +F+ LI    K 
Sbjct: 325 DSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQ 384

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ +      +M+ +G  P+V  Y  +I +  K  + D A+  FE+M    + PN   Y
Sbjct: 385 EKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY 444

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+++     + D    ++ +M   G  L+   +  +I +H  +
Sbjct: 445 TSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKE 489



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   +N+++ S   + R      ++D M+  GV+P    + +LI G     
Sbjct: 466 EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAG 525

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +       M + G  PD   YN LI+  G C+ S  D A+ +F+EM    V PN  T
Sbjct: 526 KMDEATKLLSSMFSVGMKPDCVTYNTLIN--GYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 149 YVCLLNA 155
           Y  +L  
Sbjct: 584 YNIILQG 590



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 2/163 (1%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y +++ SL    ++    ++  +M+  G+      F+S+I    K  R+ ++    
Sbjct: 440 NIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLF 499

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M   G  P+V  Y+ LI         D+A ++   M    +KP+  TY  L+N     
Sbjct: 500 DLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADD 200
            ++D   A+ ++M ++G   +   Y  ++    HT +   A +
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKE 602



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 59/157 (37%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +   Y TV+     +         Y +M+   + P    + S+I    KG  +     
Sbjct: 193 APDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAME 252

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M  NG +P+   YN ++      +   +AI   ++M+   V+P+  TY  L++   
Sbjct: 253 VLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLC 312

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             G+      I   MT  G   D   Y  L+  +  K
Sbjct: 313 KNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATK 349



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 135/365 (36%), Gaps = 24/365 (6%)

Query: 53  SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112
           SQ    LL  + DD    G  P    + ++I G  K       +    +M      PDV 
Sbjct: 174 SQEALELLHMMADDRG-GGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV 232

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+ +I+   K +  D+A+ +   M K  V PN  TY  +L+   ++ Q       ++ M
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 173 TAAGAGLDKFCYAGLI-----TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227
            + G   D   Y  L+        + +  +  D+ TK    +E           G   + 
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK--RGLEPDIATYCTLLQGYATKG 350

Query: 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDR 287
            +  V    L +L     +H      + L+  Y       A+ + V     +   +++  
Sbjct: 351 AL--VEMHALLDLMVRNGIHPDHHVFNILICAY-------AKQEKVDEAMLVFSKMRQHG 401

Query: 288 KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGM 346
            +P+V      I     SG +D+    FE  I     P   +Y +L+    +F    K  
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDK-- 459

Query: 347 QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVE 406
             A++ ++ M  R I L+    +   ++ +  K G    +  ++DLM    + P++    
Sbjct: 460 --AEELILEMLDRGICLNTIFFNS--IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYS 515

Query: 407 AYYNG 411
              +G
Sbjct: 516 TLIDG 520


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +++ + R   ++D+  DM  +G+ P R  +++L+ G  K   L++ F   + MK
Sbjct: 243 YNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
               LPD+  YN LI+      +  + + + + MK  +++P+  TY  L++ C   G   
Sbjct: 303 QTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSL 362

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               ++  M   G   ++  +  +      K  + ++   K+ ELVE
Sbjct: 363 EAKKLMEQMENDGVKPNQVTH-NISLKWLCKEEKREEVTRKVKELVE 408



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 11/212 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R       + +N+++  L    +  L  + +D++   G+ P    F+S+I+G  K 
Sbjct: 510 DEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKE 569

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQ 147
            R++  F F ++   + F PD    N L++  G CK   +++A+  F  +   E + +  
Sbjct: 570 GRVEKAFEFYNESIKHSFKPDNYTCNILLN--GLCKEGMTEKALNFFNTLIT-EREVDTV 626

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKI 205
           TY  +++A     +L   Y ++ +M       D+F Y  +IT+     K+  AD+   K 
Sbjct: 627 TYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKF 686

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
                  K    +ET  N A +E    SKEEL
Sbjct: 687 SGKFGSMKRNLHLETEKNPATSE----SKEEL 714



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSD 128
            V P    +++++    K  RL D       MK NG +P+   YN L  V G CK  +  
Sbjct: 235 NVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNL--VYGYCKLGSLK 292

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +A +I E MK+  + P+  TY  L+N    AG +     ++  M +     D   Y  LI
Sbjct: 293 EAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLI 352



 Score = 41.6 bits (96), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM--KGSRLQDTFFFRDQ 101
           YNT++            + + + M  DGV+P + + H++ +  +  +  R + T   ++ 
Sbjct: 348 YNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQ-VTHNISLKWLCKEEKREEVTRKVKEL 406

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++ +GF PD+  Y+ LI    K  +   A+ +  EM +  +K N  T   +L+A     +
Sbjct: 407 VEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERK 466

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +D  + ++      G  +D+  Y  LI  +
Sbjct: 467 VDEAHNLLDSAHKRGYIVDEVTYGTLIMGY 496


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L  + R   + D+  DM  +G  P    +++++   M G++    +  R
Sbjct: 419 NVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLA--MCGNKGMHKYVNR 476

Query: 100 --DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +MK+ GF P+   +N LI   G+C +    ++++EEM K    P   TY  LLNA A
Sbjct: 477 VFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALA 536

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             G  +   +++ DM + G   ++  Y+ ++  +
Sbjct: 537 RRGDWEAAESVILDMKSKGFKPNETSYSLMLNCY 570



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 109/275 (39%), Gaps = 45/275 (16%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D  D M+  G+ P    + ++I    K  +      F  QMK +G +P+V  YN ++ + 
Sbjct: 371 DFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGML 430

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK    ++ I +  +M+     PN  T+  +L  C   G    V  + R+M + G   ++
Sbjct: 431 GKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNR 490

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             +  LI A+     + D     ++++ E                 EM+           
Sbjct: 491 DTFNALIGAYGRCGSQID-----VVKMYE-----------------EMI----------- 517

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNI 299
                  + GF +  +T Y+   +A A   D +A E+++  +K     P+   Y +M N 
Sbjct: 518 -------KAGF-TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLN- 568

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
            CY   G+     K+ E+      FP   L  TLV
Sbjct: 569 -CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV 602



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 19/218 (8%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+    NA  Y TV+ +     +       +  M   G  P    +++++    K SRL+
Sbjct: 378 RKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLE 437

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +       M++NG  P+   +N ++++CG         R+F EMK    +PN  T+  L+
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALI 497

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
            A    G    V  +  +M  AG       Y  L+ A      R D  A + + L  +SK
Sbjct: 498 GAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR---RGDWEAAESVILDMKSK 554

Query: 214 GWSSVETS----------GNNAENEMMGVSK--EELYN 239
           G+   ETS          G N      G+ K  EE+YN
Sbjct: 555 GFKPNETSYSLMLNCYAKGGNGR----GIEKIEEEIYN 588


>gi|260780506|gb|ACX50799.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780508|gb|ACX50800.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780510|gb|ACX50801.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780512|gb|ACX50802.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780514|gb|ACX50803.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780516|gb|ACX50804.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780518|gb|ACX50805.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780520|gb|ACX50806.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780522|gb|ACX50807.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780524|gb|ACX50808.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780526|gb|ACX50809.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780528|gb|ACX50810.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780530|gb|ACX50811.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780532|gb|ACX50812.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780534|gb|ACX50813.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780536|gb|ACX50814.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780538|gb|ACX50815.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780540|gb|ACX50816.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780542|gb|ACX50817.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780544|gb|ACX50818.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780550|gb|ACX50821.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780552|gb|ACX50822.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780554|gb|ACX50823.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780556|gb|ACX50824.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780560|gb|ACX50826.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780562|gb|ACX50827.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780564|gb|ACX50828.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780566|gb|ACX50829.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780568|gb|ACX50830.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780570|gb|ACX50831.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780572|gb|ACX50832.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780574|gb|ACX50833.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780576|gb|ACX50834.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780578|gb|ACX50835.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780580|gb|ACX50836.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780582|gb|ACX50837.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780584|gb|ACX50838.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780586|gb|ACX50839.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780588|gb|ACX50840.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780590|gb|ACX50841.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780592|gb|ACX50842.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780594|gb|ACX50843.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780596|gb|ACX50844.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780598|gb|ACX50845.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780600|gb|ACX50846.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780602|gb|ACX50847.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780604|gb|ACX50848.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780606|gb|ACX50849.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780608|gb|ACX50850.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780610|gb|ACX50851.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780612|gb|ACX50852.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780614|gb|ACX50853.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780616|gb|ACX50854.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780618|gb|ACX50855.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780620|gb|ACX50856.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780622|gb|ACX50857.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780624|gb|ACX50858.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 183

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 10  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMI 69

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  ++ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 70  DEGFKPDVVTFSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 127

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 128 IDEAERLFEEMSEKGCTRDSYCYNALIDAFT-KHGKVDEAMT-LFKRMEEEEG 178


>gi|224576615|gb|ACN56981.1| At1g03560-like protein [Capsella rubella]
 gi|224576617|gb|ACN56982.1| At1g03560-like protein [Capsella rubella]
 gi|224576619|gb|ACN56983.1| At1g03560-like protein [Capsella rubella]
 gi|224576621|gb|ACN56984.1| At1g03560-like protein [Capsella rubella]
 gi|224576623|gb|ACN56985.1| At1g03560-like protein [Capsella rubella]
 gi|224576627|gb|ACN56987.1| At1g03560-like protein [Capsella rubella]
 gi|224576629|gb|ACN56988.1| At1g03560-like protein [Capsella rubella]
 gi|224576635|gb|ACN56991.1| At1g03560-like protein [Capsella rubella]
 gi|224576637|gb|ACN56992.1| At1g03560-like protein [Capsella rubella]
 gi|224576647|gb|ACN56997.1| At1g03560-like protein [Capsella grandiflora]
          Length = 196

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +      N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158


>gi|125544731|gb|EAY90870.1| hypothetical protein OsI_12477 [Oryza sativa Indica Group]
          Length = 601

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           V P   +F++L+ G +   R +D F    +M+  G  P+   Y  L+   G     D+A+
Sbjct: 226 VAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAM 285

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           R+F EM++    P+  TY  L+ A   AG++   Y  +  M   G  +D   Y G   AH
Sbjct: 286 RVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAH 345

Query: 192 TNKIPRADDTATKIIELVEQSK 213
             K     +   + +EL+E+ +
Sbjct: 346 EKK-----EQLEECLELMERMR 362



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 11/166 (6%)

Query: 16  GALGR-----RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           GA GR     R FV      E  R+  A ++  Y T+VT+     R     +  D M  +
Sbjct: 276 GARGRVDEAMRVFV------EMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMARE 329

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++    ++    V   K  +L++     ++M+     PD+++YN +I +  K   + QA
Sbjct: 330 GLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRLACKLGETKQA 389

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + ++ EM+  E+ P   T+  ++      G L       +DM   G
Sbjct: 390 VALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGYFKDMVGRG 435



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 64/320 (20%)

Query: 66  DMMLDGVQPTRDL----FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + +++ +QP   L    + +L+ G  +  +L +      +MKA    PDV V+N L++  
Sbjct: 181 EQLVEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGF 240

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 + A  +  EM++    PN  +Y  L+    A G++D    +  +M   G   D 
Sbjct: 241 VADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDS 300

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             Y  L+TA           A +I      S+G+            E + V   E   + 
Sbjct: 301 VTYGTLVTAFCK--------AGRI------SQGY------------EFLDVMAREGLRVD 334

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
              Y+    GF           F A  + + ++    L+E +++ R  PD+ I    IR 
Sbjct: 335 AGVYL----GF-----------FVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRL 379

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV------- 354
               G+      ++ +   +E  P  + +A +V G           + Q  LV       
Sbjct: 380 ACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGL----------VGQGVLVEACGYFK 429

Query: 355 NMNSRNIFLSPRMG--SDLL 372
           +M  R +F++P+ G   DLL
Sbjct: 430 DMVGRGLFVAPQYGVLKDLL 449


>gi|115455091|ref|NP_001051146.1| Os03g0728200 [Oryza sativa Japonica Group]
 gi|50428716|gb|AAT77067.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108710874|gb|ABF98669.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113549617|dbj|BAF13060.1| Os03g0728200 [Oryza sativa Japonica Group]
          Length = 601

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           V P   +F++L+ G +   R +D F    +M+  G  P+   Y  L+   G     D+A+
Sbjct: 226 VAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAM 285

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           R+F EM++    P+  TY  L+ A   AG++   Y  +  M   G  +D   Y G   AH
Sbjct: 286 RVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAH 345

Query: 192 TNKIPRADDTATKIIELVEQSK 213
             K     +   + +EL+E+ +
Sbjct: 346 EKK-----EQLEECLELMERMR 362



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 11/166 (6%)

Query: 16  GALGR-----RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           GA GR     R FV      E  R+  A ++  Y T+VT+     R     +  D M  +
Sbjct: 276 GARGRVDEAMRVFV------EMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMARE 329

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++    ++    V   K  +L++     ++M+     PD+++YN +I +  K   + QA
Sbjct: 330 GLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRLACKLGETKQA 389

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + ++ EM+  E+ P   T+  ++      G L       +DM   G
Sbjct: 390 VALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGYFKDMVGRG 435



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 64/320 (20%)

Query: 66  DMMLDGVQPTRDL----FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + +++ +QP   L    + +L+ G  +  +L +      +MKA    PDV V+N L++  
Sbjct: 181 EQLVEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGF 240

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 + A  +  EM++    PN  +Y  L+    A G++D    +  +M   G   D 
Sbjct: 241 VADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDS 300

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             Y  L+TA           A +I      S+G+            E + V   E   + 
Sbjct: 301 VTYGTLVTAFCK--------AGRI------SQGY------------EFLDVMAREGLRVD 334

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
              Y+    GF           F A  + + ++    L+E +++ R  PD+ I    IR 
Sbjct: 335 AGVYL----GF-----------FVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRL 379

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV------- 354
               G+      ++ +   +E  P  + +A +V G           + Q  LV       
Sbjct: 380 ACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGL----------VGQGVLVEACGYFK 429

Query: 355 NMNSRNIFLSPRMG--SDLL 372
           +M  R +F++P+ G   DLL
Sbjct: 430 DMVGRGLFVAPQYGVLKDLL 449


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQ 93
           R     A  YN+++  L  + ++  + ++Y++M  +G   P    + +LI    K  R  
Sbjct: 184 RKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQD 243

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                 ++MK NG  P   +Y  LI++  K  N   A+ +FEEM+    +P+  TY  L+
Sbjct: 244 SAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELI 303

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
                AG+ D  Y    +M   G   D      +I     K  R DD A K+ E
Sbjct: 304 RGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMIN-FLGKAGRLDD-AVKLFE 355



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT++ +L  S+ R   +   ++ M   G+ P+   +  LI G  K +R +      ++M
Sbjct: 369 YNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              GF P  A Y  LI   GK K  D A  +F+E+K+     + + Y  ++     AG+L
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           D    +  +M   G   + + Y  L++ 
Sbjct: 489 DDAVNLFDEMNKLGCTPNVYAYNALMSG 516



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 84/180 (46%), Gaps = 2/180 (1%)

Query: 13  SVGGALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           S+  ALG+  R+ +     +E      +++A  Y  ++  L    R     +++D+M   
Sbjct: 442 SLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKL 501

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G  P    +++L+ G  +   L +      +M+ +G +PD+  YN +++   K     +A
Sbjct: 502 GCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 561

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +   MK+  +KP+  +Y  +L A + AG  +    ++++M   G   D   Y+ ++ A
Sbjct: 562 MEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEA 621



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 57  FFLLRDV------YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD 110
           FF L +V      +++M     +P    +  LI G  K  R  + + F  +M+  G  PD
Sbjct: 271 FFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPD 330

Query: 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIV 169
             V N +I+  GK    D A+++FEEM   +  P+  TY  ++ A   +  ++  + +  
Sbjct: 331 TVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWF 390

Query: 170 RDMTAAGAGLDKFCYAGLITA--HTNKIPRA 198
             M  +G     F Y+ LI     TN+  +A
Sbjct: 391 ERMKGSGISPSPFTYSILIDGFCKTNRTEKA 421



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 51/110 (46%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + ++M  +G+QPT  ++  LI    K + +       ++M+     PDV  Y  LI   G
Sbjct: 248 LLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLG 307

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           K    D+A   F EM++   +P+      ++N    AG+LD    +  +M
Sbjct: 308 KAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEM 357



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 72/164 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   + +    + Y +++ +L   +R+ +  +++ ++  +    +  ++  +I    K 
Sbjct: 426 EEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKA 485

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL D     D+M   G  P+V  YN L+S   +    D+A+     M+++   P+  +Y
Sbjct: 486 GRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSY 545

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             +LN  A  G       ++ +M  +    D   Y  ++ A ++
Sbjct: 546 NIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSH 589



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 13/217 (5%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYAN-NASEYNTVVTSLTSQRRFFLLR 61
           +L +++    +V GALG   F       E  R  Y   +   Y  ++  L    RF    
Sbjct: 266 MLIALFFKLNNVHGALG--LF-------EEMRHQYCRPDVFTYTELIRGLGKAGRFDEAY 316

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + + +M  +G +P   + +++I    K  RL D     ++M     +P V  YN +I   
Sbjct: 317 NFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKAL 376

Query: 122 GKCKNSDQAI-RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            + K+    I   FE MK   + P+  TY  L++      + +    ++ +M   G    
Sbjct: 377 FESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPC 436

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
              Y  LI A   K  R  D A ++ + ++++ G SS
Sbjct: 437 PAAYCSLIDA-LGKAKRY-DIAHELFQELKENCGSSS 471


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + R Y  N   Y++++  L   +R  L   V   M+ +   P   ++  +I G  K  + 
Sbjct: 698 SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKT 757

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            + +     M+  G  P+V  Y  +I   GK    D+ + +  +M      PN  TY  L
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 153 LNACAAAGQLDPVYAIVRDM 172
           +N C AAG LD  + ++ +M
Sbjct: 818 INHCCAAGLLDDAHQLLDEM 837



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V  L    +    RD+ D M ++G +P   ++ +LI G  K  +L +     
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVF 694

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G+ P+V  Y+ LI    K K  D A+++   M +    PN   Y  +++     
Sbjct: 695 TKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKV 754

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           G+ D  Y ++  M   G   +   Y  +I     K  + D    K +EL+ Q
Sbjct: 755 GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF-GKAGKVD----KCLELMRQ 801



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 62/153 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    + +   L    +F     +  +MM  G  P    +  +I      S++ + F   
Sbjct: 444 NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLF 503

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK+N  +PDV  Y  LI    K     QA + F+EM +    PN  TY  L++A   A
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            ++     +   M + G   +   Y  LI  H 
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 121/327 (37%), Gaps = 60/327 (18%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++     +R+    + +   M+ +G  P+R +F+SLI    +       +   
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 100 DQMKANGFLPDVAVYNYLI-SVCGKCKNS-----DQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +M   G  P   VYN LI  +CG  K       + A + + EM    V  N      L 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD------------- 200
                AG+ +  Y+I+R+M + G   D   Y+ +I    N   + D+             
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA-SKVDNAFLLFEEMKSNHV 511

Query: 201 -----TATKIIE------LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
                T T +I+      L++Q++ W           +EM+                  R
Sbjct: 512 VPDVFTYTILIDSFCKVGLLQQARKWF----------DEMV------------------R 543

Query: 250 GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309
            G    ++T Y    HA  + + + +   L EM+  +   P+V      I  +  SG I+
Sbjct: 544 DGCAPNVVT-YTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 310 NGHKVFEDYICSEKFPPAELYATLVEG 336
              +++     +   P  ++Y  + +G
Sbjct: 603 KACQIYARMRGNADIPDVDMYFKIDDG 629



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R   A N   Y  ++ +    R+     ++++ M+ +G  P    + +LI G  K 
Sbjct: 539 DEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKS 598

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVY----------------NYLISVCGKCKNSDQAIRI 133
            +++       +M+ N  +PDV +Y                  L+    K     +A  +
Sbjct: 599 GQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDL 658

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + M     +PN   Y  L++     G+LD    +   M+  G G + + Y+ LI
Sbjct: 659 LDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLI 713



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
           E   + +  + S Y+ V+  L +  +    FLL   +++M  + V P    +  LI    
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLL---FEEMKSNHVVPDVFTYTILIDSFC 526

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           K   LQ    + D+M  +G  P+V  Y  LI    K +    A  +FE M      PN  
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVV 586

Query: 148 TYVCLLNACAAAGQLDP---VYAIVR 170
           TY  L++    +GQ++    +YA +R
Sbjct: 587 TYTALIDGHCKSGQIEKACQIYARMR 612



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 21/203 (10%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE    +   +   Y  ++ S          R  +D+M+ DG  P    + +LI   +K 
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKK-------- 139
            ++       + M + G +P+V  Y  LI   G CK+   ++A +I+  M+         
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALID--GHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 140 --YEV------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +++       PN  TY  L++    A ++     ++  M+  G   +   Y  LI   
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 192 TNKIPRADDTATKIIELVEQSKG 214
             K+ + D+      ++ E+  G
Sbjct: 682 C-KVGKLDEAQMVFTKMSERGYG 703


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 1/183 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  RR +  +   Y TV+ +   QR F  + +V D M   G  P    +  ++    K 
Sbjct: 197 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 256

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE-EMKKYEVKPNGQT 148
            R ++      +MK++G  PD   YN LI++ GK  +  +A ++F  EM    V  N  T
Sbjct: 257 ERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMNGVSHNLAT 316

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  +++     G+ D    ++++M A     D   Y  L+    ++  +AD     + EL
Sbjct: 317 YNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQADTVRHLLSEL 376

Query: 209 VEQ 211
             +
Sbjct: 377 TSK 379



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 1/149 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    N ++  L  +R+  + R+V+  ++   + P    F+  + G     R+ +  +  
Sbjct: 138 NTETMNVLLDVLCKERKIEVAREVFA-VLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTI 196

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK  GF P V  Y  ++    K +N  +   + + M      PN  TY  ++ + A  
Sbjct: 197 EEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKC 256

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + +   ++   M ++G   D   Y  LI
Sbjct: 257 ERFEEALSVSHRMKSSGCKPDTLFYNSLI 285



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  +N  V    S RR        ++M   G  P+   + +++    K    +  +   
Sbjct: 172 DAYTFNIFVHGWCSIRRIDEAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVL 231

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M + G  P+V  Y  +++   KC+  ++A+ +   MK    KP+   Y  L+N    +
Sbjct: 232 DSMGSQGCHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKS 291

Query: 160 GQL----------DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
           G L           P+  +  ++      +  FCY G          R DD    + E+ 
Sbjct: 292 GHLFEASQVFRVEMPMNGVSHNLATYNTMISIFCYYG----------RDDDALNVLKEME 341

Query: 210 EQS 212
            QS
Sbjct: 342 AQS 344


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 10/295 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++ SL   R      D++  M   G+ PT   + SLI G    SR ++     ++M 
Sbjct: 234 YSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMT 293

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +   +PD+  ++ LI +  K  N  +A  + + M +  V+PN  TY  L++  +   ++ 
Sbjct: 294 SLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVV 353

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               +   M   G   D F Y+ LI  +   + R D+      E++ Q    ++V  +  
Sbjct: 354 EARKLFDVMITRGCKPDVFSYSILINGYC-MVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412

Query: 224 NAENEMMGVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                 +G  +E  EL+     + +H   G+L  L T Y V      +   +     L  
Sbjct: 413 IHAFCQLGKLREARELF-----KDMH-TNGYLPDLCT-YSVLLEGFCKQGYLGKAFRLFR 465

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            ++     P++ +    I     SG++++  K+F +       P  ++Y T++ G
Sbjct: 466 AMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIING 520



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 65/158 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +    N   Y T++ +     +    R+++ DM  +G  P    +  L+ G  K  
Sbjct: 396 EMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            L   F     M+     P++ +Y  LI    K  N + A ++F E+  + ++P+ Q Y 
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYT 515

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            ++N     G LD      R M   G   ++F Y  +I
Sbjct: 516 TIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVII 553



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/373 (19%), Positives = 143/373 (38%), Gaps = 19/373 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T++  L     F    +++DDM+  G QP    + ++I G  K            +M 
Sbjct: 164 FTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMG 223

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ LI    K +  ++A+ IF  MK   + P   +Y  L+    +  +  
Sbjct: 224 EVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWK 283

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIEL-VEQSKGWSSVET 220
              A++ +MT+     D   ++ LI     +  +  A      + E+ VE +    +   
Sbjct: 284 EASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLM 343

Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
            G + + E+  V   +L+++        RG      +  Y +  +    +K +   + L 
Sbjct: 344 HGYSLQMEV--VEARKLFDVMIT-----RG--CKPDVFSYSILINGYCMVKRIDEAKQLF 394

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMF 339
             +     +P+       I  +   G +    ++F+D   +   P    Y+ L+EG    
Sbjct: 395 NEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQ 454

Query: 340 GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKIT 399
           GY  K  +L +        +  +L P +    +L+ +  KSG    A  ++  +    + 
Sbjct: 455 GYLGKAFRLFRAM------QGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQ 508

Query: 400 PSLPAVEAYYNGL 412
           P +       NGL
Sbjct: 509 PDVQIYTTIINGL 521



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           QM+  G  P+    N LI+     ++ D    +  ++ K  ++P   T+  L+N    AG
Sbjct: 116 QMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAG 175

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202
           +      +  DM A G   D + Y  +I    N + +  +TA
Sbjct: 176 EFAQALELFDDMVARGCQPDVYTYTTII----NGLCKMGETA 213



 Score = 38.5 bits (88), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 16  GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
           G LG+ F +  A    Y + N       Y  ++ S+         R ++ ++ + G+QP 
Sbjct: 455 GYLGKAFRLFRAMQGTYLKPNLV----MYTILIDSMCKSGNLNHARKLFSELFVHGLQPD 510

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
             ++ ++I G  K   L +      +M+ +G  P+   YN +I    + K+  +A+++  
Sbjct: 511 VQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIG 570

Query: 136 EMK 138
           EM+
Sbjct: 571 EMR 573


>gi|222625312|gb|EEE59444.1| hypothetical protein OsJ_11623 [Oryza sativa Japonica Group]
          Length = 589

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           V P   +F++L+ G +   R +D F    +M+  G  P+   Y  L+   G     D+A+
Sbjct: 214 VAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAM 273

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           R+F EM++    P+  TY  L+ A   AG++   Y  +  M   G  +D   Y G   AH
Sbjct: 274 RVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAH 333

Query: 192 TNKIPRADDTATKIIELVEQSK 213
             K     +   + +EL+E+ +
Sbjct: 334 EKK-----EQLEECLELMERMR 350



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 11/166 (6%)

Query: 16  GALGR-----RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           GA GR     R FV      E  R+  A ++  Y T+VT+     R     +  D M  +
Sbjct: 264 GARGRVDEAMRVFV------EMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFLDVMARE 317

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++    ++    V   K  +L++     ++M+     PD+++YN +I +  K   + QA
Sbjct: 318 GLRVDAGVYLGFFVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRLACKLGETKQA 377

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + ++ EM+  E+ P   T+  ++      G L       +DM   G
Sbjct: 378 VALWNEMETNELSPGVDTFAIMVTGLVGQGVLVEACGYFKDMVGRG 423



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 64/320 (20%)

Query: 66  DMMLDGVQPTRDL----FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + +++ +QP   L    + +L+ G  +  +L +      +MKA    PDV V+N L++  
Sbjct: 169 EQLVEELQPRLPLSLRHYTALLYGWCRMGKLDEAKHVLARMKAAEVAPDVVVFNTLLAGF 228

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 + A  +  EM++    PN  +Y  L+    A G++D    +  +M   G   D 
Sbjct: 229 VADGRFEDAFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDS 288

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             Y  L+TA           A +I      S+G+            E + V   E   + 
Sbjct: 289 VTYGTLVTAFCK--------AGRI------SQGY------------EFLDVMAREGLRVD 322

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
              Y+    GF           F A  + + ++    L+E +++ R  PD+ I    IR 
Sbjct: 323 AGVYL----GF-----------FVAHEKKEQLEECLELMERMRECRCPPDLSIYNVVIRL 367

Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLV------- 354
               G+      ++ +   +E  P  + +A +V G           + Q  LV       
Sbjct: 368 ACKLGETKQAVALWNEMETNELSPGVDTFAIMVTGL----------VGQGVLVEACGYFK 417

Query: 355 NMNSRNIFLSPRMG--SDLL 372
           +M  R +F++P+ G   DLL
Sbjct: 418 DMVGRGLFVAPQYGVLKDLL 437


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D+MM DG++PT+  + SLI    + ++ ++     +++   G  PD+ + N L+   G
Sbjct: 420 LHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMD--G 477

Query: 123 KCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C   N D+A  + +EM +  + P+  TY CL+      G+ +    ++ +M   G   D
Sbjct: 478 HCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 537

Query: 181 KFCYAGLITAHTNK 194
              Y  LI+ ++ K
Sbjct: 538 HISYNTLISGYSKK 551



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R N   +   YN ++  L  + +F   R++  +M   G++P    +++LI G  K 
Sbjct: 492 KEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKK 551

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +  F  RD+M + GF P +  YN L+    K ++ + A  +  EMK   + PN  ++
Sbjct: 552 GDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSF 611

Query: 150 VCLLNACAAA 159
             ++ A + +
Sbjct: 612 CSVIEAMSKS 621



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 7/177 (3%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R    +N   +N ++  L  + +    +     M   G++PT   +++L+ G     R++
Sbjct: 219 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIE 278

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                  +MK+ GF PD+  YN ++S +C    N  +A  +  EMK   + P+  +Y  L
Sbjct: 279 GARMIISEMKSKGFQPDLQTYNPILSWMC----NEGRASEVLREMKGIGLVPDSVSYNIL 334

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
           +  C+  G L+  +A   +M   G     + Y  LI      NKI  A+    +I E
Sbjct: 335 IRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE 391



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V   + + R    R +  +M   G QP    ++ ++       R  +      +MK
Sbjct: 264 YNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVL---REMK 320

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PD   YN LI  C    + + A    +EM K  + P   TY  L++      +++
Sbjct: 321 GIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIE 380

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
               ++R++   G  LD   Y  +I  +
Sbjct: 381 AAEILIREIREKGIVLDSVTYNIVINGY 408



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 60  LRDVYDDMML--DGVQPTRDLFHSLIVGTMKGSRLQD----TFFFRDQMKANGFLPDVAV 113
           +RD++D+++L  D +Q    +    +V      R+ D     F+    MK  GF P    
Sbjct: 137 VRDLFDELVLAHDRLQTKSTILFDFMVRFYCQLRMVDEAIECFYL---MKEKGFDPKTET 193

Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
            N+++S+  +    + A   + +M + E+K N  T+  ++N     G+L      +  M 
Sbjct: 194 CNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIME 253

Query: 174 AAGAGLDKFCYAGLITAHT 192
           + G       Y  L+  ++
Sbjct: 254 SFGIKPTIVTYNTLVQGYS 272


>gi|341605747|gb|AEK82976.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605749|gb|AEK82977.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605751|gb|AEK82978.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++  L       L   VY+D   DG+      +  L+ G  K  R+ +     D+M+
Sbjct: 225 YNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMR 284

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            N   PDV  Y  ++ V     N D  +R++EEM+K +V+P+   Y  L+ A     ++ 
Sbjct: 285 GNLCKPDVFAYTAMVKVLVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVG 344

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
             + + ++M      +D+  Y  LI
Sbjct: 345 EGFELFKEMKQKKYLIDRAIYGSLI 369



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ Y +N + YN     L    +F     V + M + G  P+   F  LI   +  +R  
Sbjct: 145 QKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEKQFEILIRMHIDANRGL 204

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
             ++  ++MK  G  P V +YN ++    K  + D A+ ++E+ K+  +     TY+ L+
Sbjct: 205 RVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILV 264

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
                AG++D V  ++  M       D F Y  ++
Sbjct: 265 KGLCKAGRIDEVLELLDRMRGNLCKPDVFAYTAMV 299



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 139/385 (36%), Gaps = 50/385 (12%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +     +   Y T+V +L +  R     +++ +M        R ++ SLI G +  
Sbjct: 316 EEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYLIDRAIYGSLIEGFVVN 375

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+         +  +G+  D+A+YN LI      K  D+A ++F+      ++PN  T 
Sbjct: 376 ERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESLEPNFLTV 435

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +L + A   ++D   +++  M   G                   P  DD         
Sbjct: 436 KPMLVSYAEMKRMDDFCSLLGQMQKLG------------------FPVIDDL-------- 469

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG-GFLSRLLTVYHVAFHACA 268
             SK +S +             + K E   L    + H +  G+ S  +++Y++   A  
Sbjct: 470 --SKFFSVM-------------IEKGERLKLALEVFEHLKAKGYCS--ISIYNILMEAIH 512

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
              +V+   +L + +K     PD       I C++  GD+      +   I   + P   
Sbjct: 513 RTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVA 572

Query: 329 LYATLVEGAMFG-YTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
            Y +LV+G          + L +D L N+ S      P      L +    KSG      
Sbjct: 573 AYRSLVKGLCKSEEIDAAIMLVRDCLANVTS-----GPMEFKYTLTILHACKSGNAEKVI 627

Query: 388 YIWDLMQARKITPSLPAVEAYYNGL 412
            + + M     TP      A  +G+
Sbjct: 628 DVLNEMMQEGCTPDEVTYSALISGM 652


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L  + R   + D+  DM  +G  P    +++++   M G++    +  R
Sbjct: 419 NVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLA--MCGNKGMHKYVNR 476

Query: 100 --DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +MK+ GF P+   +N LI   G+C +    ++++EEM K    P   TY  LLNA A
Sbjct: 477 VFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALA 536

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             G  +   +++ DM + G   ++  Y+ ++  +
Sbjct: 537 RRGDWEAAESVILDMKSKGFKPNETSYSLMLNCY 570



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 109/275 (39%), Gaps = 45/275 (16%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D  D M+  G+ P    + ++I    K  +      F  QMK +G +P+V  YN ++ + 
Sbjct: 371 DFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGML 430

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK    ++ I +  +M+     PN  T+  +L  C   G    V  + R+M + G   ++
Sbjct: 431 GKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNR 490

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
             +  LI A+     + D     ++++ E                 EM+           
Sbjct: 491 DTFNALIGAYGRCGSQID-----VVKMYE-----------------EMI----------- 517

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNI 299
                  + GF +  +T Y+   +A A   D +A E+++  +K     P+   Y +M N 
Sbjct: 518 -------KAGF-TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLN- 568

Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
            CY   G+     K+ E+      FP   L  TLV
Sbjct: 569 -CYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV 602



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 19/218 (8%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+    NA  Y TV+ +     +       +  M   G  P    +++++    K SRL+
Sbjct: 378 RKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLE 437

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +       M++NG  P+   +N ++++CG         R+F EMK    +PN  T+  L+
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALI 497

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
            A    G    V  +  +M  AG       Y  L+ A      R D  A + + L  +SK
Sbjct: 498 GAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALAR---RGDWEAAESVILDMKSK 554

Query: 214 GWSSVETS----------GNNAENEMMGVSK--EELYN 239
           G+   ETS          G N      G+ K  EE+YN
Sbjct: 555 GFKPNETSYSLMLNCYAKGGNGR----GIEKIEEEIYN 588


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++ +L   +      +V   M+  GV P    ++S++ G     + ++   F 
Sbjct: 115 NVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL 174

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+++G  PDV  YN L+    K     +A +IF+ M K  +KP+  TY  LL   A  
Sbjct: 175 KKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATK 234

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G L  ++ ++  M   G   + + ++ L+ A+  +
Sbjct: 235 GALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 269



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    R    R ++D M   G++P    + +L+ G      L +     D M 
Sbjct: 189 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMV 248

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+  V++ L+    K +  ++A+ +F +M++  + PN  TY  +++    +G+++
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
                   M   G   D   Y  LI
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLI 333



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 1/148 (0%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           VV+  T    FF   D+ D M+   + P    ++S+I    K   +         M  +G
Sbjct: 88  VVSYSTVINGFFKEGDL-DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 146

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
            +PD   YN ++          +AI   ++M+   V+P+  TY  L++     G+     
Sbjct: 147 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEAR 206

Query: 167 AIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            I   MT  G   D   Y  L+  +  K
Sbjct: 207 KIFDSMTKRGLKPDITTYGTLLQGYATK 234


>gi|307106154|gb|EFN54401.1| hypothetical protein CHLNCDRAFT_135726 [Chlorella variabilis]
          Length = 902

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DV + M  DGVQP   +F S+I       +         +M+A G  P+V  Y  L+S  
Sbjct: 168 DVLELMQFDGVQPNEQVFGSIIEAAAVAGKPSVAAELLRRMQAAGIQPNVIAYTSLLSSY 227

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
               + + A  + +EM+     PN ++Y  +++  AA G+ +        M AAG   DK
Sbjct: 228 SATGDVEAAEAVLQEMEAVGCLPNSKSYTEVMSQLAAKGRYEDCELYFNKMVAAGCLPDK 287

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVE 210
             YA LI +  N+     +   +++ LV+
Sbjct: 288 VSYAILIDSMLNRWATDREGQQQLLGLVQ 316


>gi|260780352|gb|ACX50722.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 139/342 (40%), Gaps = 14/342 (4%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A +N+  N   YN ++  L   +++ L + + +DM+  G++P    + +LI    + +  
Sbjct: 35  AEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISCANRCNYQ 94

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                + D+M     +PD   Y+ +I V GK    D+A+ ++E +KK   KP+  TY  +
Sbjct: 95  DAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTM 154

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVE 210
           +     AG +    +I  +M  +G       Y  +I+     + RA     A K+ + ++
Sbjct: 155 VRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISC----LGRAGRMGHALKVFQEMK 210

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
           Q    + V+ +       M   S+          + H R      ++ VY+     C E 
Sbjct: 211 Q----AGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQDLACDII-VYNAVIKMCREA 265

Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
             V   E  L  + +    P+ +     I  Y  +G      ++F   + +   P    Y
Sbjct: 266 GLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSY 325

Query: 331 ATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLL 372
            +L++G  +G   K  +  Q+ L  M S N     R+   +L
Sbjct: 326 TSLLQG--YG-NAKDYEKVQEILHEMVSANCAPDERLWCVIL 364


>gi|224576651|gb|ACN56999.1| At1g03560-like protein [Capsella grandiflora]
          Length = 207

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +      N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158


>gi|341605693|gb|AEK82949.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 650

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 23/242 (9%)

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G   +V  YN L+ V  K K  D+AI++F  M +   +PN  TY  +LN   A 
Sbjct: 294 NEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAE 353

Query: 160 GQ---LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
           GQ   LD +  I +     G       Y+ L+    +K+    +      ++      WS
Sbjct: 354 GQLVRLDGIVEISKRYMTQGI------YSYLVRT-LSKLGHVSEAHRLFCDM------WS 400

Query: 217 SVETSGNNAENEMM----GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
                  ++   M+    G  K  +  +     +H +G     ++  Y+  F A  +LK 
Sbjct: 401 FPVKGERDSYMSMLESLCGAGK-TIEAIEMLSKIHEKGVVTDTMM--YNTVFSALGKLKQ 457

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           +  +  L E +KKD  SPD++     I  +   G++D    +FE+   S+  P    Y +
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNS 517

Query: 333 LV 334
           L+
Sbjct: 518 LI 519



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKG-SRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           V D MM + V      F +L  G +K  S + D F   ++MK +G  PD+  YN LIS  
Sbjct: 439 VTDTMMYNTV------FSAL--GKLKQISHIHDLF---EKMKKDGPSPDIFTYNILISSF 487

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+    D+AI IFEE+++ + KP+  +Y  L+N     G +D  +   ++M   G   D 
Sbjct: 488 GRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDV 547

Query: 182 FCYAGLI 188
             Y+ L+
Sbjct: 548 VTYSTLM 554



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 2/164 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV ++L   ++   + D+++ M  DG  P    ++ LI    +   + +     ++++
Sbjct: 445 YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELE 504

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +   PD+  YN LI+  GK  + D+A   F+EM++  + P+  TY  L+       +++
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE 564

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKI 205
             Y++  +M   G   +   Y  L+     + +   A D  TK+
Sbjct: 565 MAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYTKM 608



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 139/364 (38%), Gaps = 55/364 (15%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP---TRDLFHSLIVGTMKGSRLQDTF 96
           N   YNT++  L   +       V+  M+  G +P   T  L  +L+V   +  RL    
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEGQLVRLDGIV 363

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +    G      +Y+YL+    K  +  +A R+F +M  + VK    +Y+ +L + 
Sbjct: 364 EISKRYMTQG------IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESL 417

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             AG+      ++  +   G   D   Y  + +A   K+ +     + I +L E+ K   
Sbjct: 418 CGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSA-LGKLKQ----ISHIHDLFEKMKK-- 470

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
                                 + P+ +            +  Y++   +   + +V   
Sbjct: 471 ----------------------DGPSPD------------IFTYNILISSFGRVGEVDEA 496

Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
             + E L++    PD+      I C   +GD+D  H  F++       P    Y+TL+E 
Sbjct: 497 INIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLME- 555

Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
             FG T + +++A      M  +     P + +  +L+   EKSG    A  ++  M+ +
Sbjct: 556 -CFGKTER-VEMAYSLFEEMLVKGC--QPNIVTYNILLDCLEKSGRTAEAVDLYTKMKQQ 611

Query: 397 KITP 400
            +TP
Sbjct: 612 GLTP 615



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 60/144 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++S           ++++++     +P    ++SLI    K   + +      +M+
Sbjct: 480 YNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  Y+ L+   GK +  + A  +FEEM     +PN  TY  LL+    +G+  
Sbjct: 540 EKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTA 599

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGL 187
               +   M   G   D   Y  L
Sbjct: 600 EAVDLYTKMKQQGLTPDSITYTVL 623


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 156/399 (39%), Gaps = 45/399 (11%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E +R     N    N +V +L    +   +     ++   GV P    +++LI      
Sbjct: 214 QEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQ 273

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             +++ F     M + GF P V  YN +I+  G CK+   ++A  +F EM +  + P+  
Sbjct: 274 GLMEEAFELMHAMPSKGFSPGVYTYNTVIN--GLCKHGKYERAKEVFAEMLRSGLSPDST 331

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT------------NKI 195
           TY  LL      G       I  DM +     D  C++ +++  T            N +
Sbjct: 332 TYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 391

Query: 196 PRADDTATKII-ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
             A      +I  ++ Q      + +   N  NEM+                 ++G  + 
Sbjct: 392 KEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEML-----------------QQGCAMD 434

Query: 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314
             +  Y+   H   + K +   + L   + +    PD Y +   I  +   G++ N  ++
Sbjct: 435 --VVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMEL 492

Query: 315 FEDYICSEKFPPAEL--YATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLL 372
           F+     EK    ++  Y TL++G  FG     +  A++   +M S+ I  +P   S  +
Sbjct: 493 FKKM--KEKRIKLDVVTYNTLLDG--FGKVGD-IDTAKEIWADMVSKEILPTPISFS--I 545

Query: 373 LVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
           LV A    G  + A  +WD M ++ I P++    +   G
Sbjct: 546 LVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKG 584



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 140/334 (41%), Gaps = 35/334 (10%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV-GTMKGSRLQ 93
           + ++     YNTV+  L    ++   ++V+ +M+  G+ P    + SL++    KG  ++
Sbjct: 289 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVE 348

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
               F D M++   +PD+  ++ ++S+  +  N D+A+  F  +K+  + P+   Y  L+
Sbjct: 349 TENIFSD-MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI 407

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIELVEQ 211
                 G +     +  +M   G  +D   Y  ++     +  +  AD    ++ E    
Sbjct: 408 QGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLF 467

Query: 212 SKGWS-SVETSGN----NAEN--EMMGVSKEELYNLPTAEYVHRRGGF------------ 252
              ++ ++   G+    N +N  E+    KE+   L    Y     GF            
Sbjct: 468 PDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEI 527

Query: 253 ----LSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
               +S+ +    ++F       C++    +A     EM+ K  K P V I    I+ Y 
Sbjct: 528 WADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIK-PTVMICNSMIKGYC 586

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAEL-YATLVEG 336
            SG+  +G ++F + + SE F P  + Y TL+ G
Sbjct: 587 RSGNASDG-EIFLEKMISEGFVPDCISYNTLIYG 619



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ +V +L S+        V+D+M+   ++PT  + +S+I G  +     D   F ++M 
Sbjct: 543 FSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMI 602

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE--VKPNGQTYVCLLNACAAAGQ 161
           + GF+PD   YN LI    K +N  +A  + ++M++ +  + P+  TY  +L+      Q
Sbjct: 603 SEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQ 662

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +    A++R M   G   D+  Y  LI    ++
Sbjct: 663 MKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQ 695



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 14/271 (5%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           +F  LI   ++  +L++ +     +++ G+   +   N LI    +    + A RI++E+
Sbjct: 157 VFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEI 216

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
            +  V  N  T   ++NA    G+++ V   + ++   G   D   Y  LI+A++++   
Sbjct: 217 SRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQ--- 273

Query: 198 ADDTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255
                 +  EL+    SKG+S    + N   N +    K E      AE +  R G    
Sbjct: 274 --GLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEML--RSGLSPD 329

Query: 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
             T   +   AC +   V+      +M  +D   PD+      +  +  SG++D     F
Sbjct: 330 STTYRSLLMEACKKGDAVETENIFSDMRSRD-VVPDLVCFSSMMSLFTRSGNLDKALMYF 388

Query: 316 EDYICSEKFPPAELYATLVEGAMFGYTPKGM 346
                +   P   +Y  L++    GY  KGM
Sbjct: 389 NSVKEAGLIPDNVIYTILIQ----GYCRKGM 415



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 4/168 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++            ++++ DM+   + PT   F  L+        L + F   D+M 
Sbjct: 508 YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMI 567

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +    P V + N +I    +  N+       E+M      P+  +Y  L+        + 
Sbjct: 568 SKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMS 627

Query: 164 PVYAIVRDMTAAGAGL--DKFCYAGLITAHT--NKIPRADDTATKIIE 207
             + +V+ M     GL  D F Y  ++      N++  A+    K+IE
Sbjct: 628 KAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIE 675



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM--KANGFLPDVAVYNYLISVCG 122
           + M+ +G  P    +++LI G +K   +   F    +M  K  G +PDV  YN ++   G
Sbjct: 599 EKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILH--G 656

Query: 123 KCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            C+ +   +A  +  +M +  V P+  TY  L+N   +   L   +    +M   G   D
Sbjct: 657 FCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716



 Score = 38.9 bits (89), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++     + +      V   M+  GV P R  + SLI G +    L + F F D+M 
Sbjct: 650 YNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEML 709

Query: 104 ANGFLPD 110
             GF PD
Sbjct: 710 QRGFSPD 716


>gi|341605797|gb|AEK83001.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605799|gb|AEK83002.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605801|gb|AEK83003.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|341605803|gb|AEK83004.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605805|gb|AEK83005.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605823|gb|AEK83014.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y  +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYXVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|341605765|gb|AEK82985.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605767|gb|AEK82986.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605769|gb|AEK82987.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605771|gb|AEK82988.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|224576655|gb|ACN57001.1| At1g03560-like protein [Capsella grandiflora]
          Length = 207

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +      N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158


>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 437

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 121/283 (42%), Gaps = 37/283 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T+++   S R     + V+ DM+  G+   R L ++LI    K   ++       +MK
Sbjct: 79  FTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGNIRQGHTMFTEMK 138

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 DV  +N +I+   +    D+A  +FE M++  +KP+  TYVC+LN C++  Q  
Sbjct: 139 DR----DVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCSSLEQGR 194

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK--GWSSVETS 221
            +++ + +   AG  LD +    L+  ++N   R+ + A +I E + +     W+SV  +
Sbjct: 195 ILHSYIIE---AGLELDLWVGTALLNMYSN--CRSLEDALQIFEKLPERNLVTWTSVIAA 249

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT--------VYHVAFHACAELKDV 273
              A              +P   ++     F  ++L          Y    H CA + D+
Sbjct: 250 YAQA-------------GIPEKAWI-----FYEKMLKEGIVADKFAYTTVLHVCATMGDL 291

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           +  + + + + K   + D  +    I  Y   G  D  H++ E
Sbjct: 292 EKGKQVHDHMVKSGIATDQILDSTLIDMYAKCGRTDIAHQLLE 334


>gi|341605721|gb|AEK82963.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605821|gb|AEK83013.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L+     AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIXGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++  L    R    R+++D ++  G++P   ++  L+ G      L +   F D M 
Sbjct: 275 YAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMV 334

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  PD  ++N +     K    D+A+ IF++M++  + PN  TY  L++A    G++D
Sbjct: 335 GNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVD 394

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
                   M   G   D F ++ L+
Sbjct: 395 DAVLKFNQMIDEGMTPDIFVFSSLV 419



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 2/187 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           ++  N   Y TV+  L   +     + V+  M+  GV+P    +  LI G +   + ++ 
Sbjct: 197 SHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEV 256

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
                +M  +G  PD  +Y  L+    K     +A  IF+ + +  +KPN   Y  LL+ 
Sbjct: 257 VQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHG 316

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
            A  G L  +++ +  M   G   D   +  +  A+  K     D A  I + + Q +  
Sbjct: 317 YATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKK--AMIDEAMHIFDKMRQQRLS 374

Query: 216 SSVETSG 222
            ++ T G
Sbjct: 375 PNIVTYG 381



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++++V  L +  ++    +++ +++  G++     F++L+    +  R+ +     D M 
Sbjct: 415 FSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLML 474

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PDV  YN L+   G C     D+A ++ + +    +KP+  TY  LL+    A +
Sbjct: 475 RVGVRPDVISYNTLVD--GHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARR 532

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +D  Y++ R+M   G   D   Y  ++
Sbjct: 533 IDDAYSLFREMLMKGLTPDVVTYNTIL 559



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 2/200 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V       R      + D ++  G++P +  +++L+ G  K  R+ D +    +M 
Sbjct: 485 YNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREML 544

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PDV  YN ++    +     +A  ++  M     + N  TY  ++N       +D
Sbjct: 545 MKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVD 604

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
             + +   + +    LD F  A ++     K  R +D A  +   +        VET   
Sbjct: 605 EAFKMFHSLCSKDLQLDIFT-ANIMIGALLKGGRKED-AMDLFATISAYGLVPDVETYCL 662

Query: 224 NAENEMMGVSKEELYNLPTA 243
            AEN +   S EEL  L +A
Sbjct: 663 IAENLIKEGSLEELDELFSA 682



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 114/268 (42%), Gaps = 10/268 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++ +L  + R    + + D M+  GV+P    +++L+ G     R+ +     D + 
Sbjct: 450 FNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIV 509

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G  PD   YN L+    K +  D A  +F EM    + P+  TY  +L+     G+  
Sbjct: 510 SIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFS 569

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD--DTATKIIELVEQSKGWSSVETS 221
               +   M  +   ++ + Y  +I    N + + +  D A K+   +        + T+
Sbjct: 570 EAKELYLSMINSRTQMNIYTYNIII----NGLCKNNFVDEAFKMFHSLCSKDLQLDIFTA 625

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                  + G  KE+  +L      +   G +  + T   +A +   E   ++ ++ L  
Sbjct: 626 NIMIGALLKGGRKEDAMDLFATISAY---GLVPDVETYCLIAENLIKE-GSLEELDELFS 681

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDID 309
            ++++  +P+  ++   +R  LH GDI+
Sbjct: 682 AMEENGTAPNSRMLNALVRWLLHRGDIN 709


>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16390, chloroplastic; AltName: Full=Chloroplastic
           RNA-binding protein P67; Flags: Precursor
 gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 702

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 2/168 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ S+   +R +  + +Y D++ +G  P    + +L+    +     D      +MK
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTYVCLLNACAAAGQL 162
             G    V +YN L+S+C   +  D+A  IF++MK  E   P+  T+  L+   A +G++
Sbjct: 378 EKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRV 437

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               A +  M  AG     F    +I  +  K  + DD      +++E
Sbjct: 438 SEAEAALLQMREAGFEPTLFVLTSVIQCY-GKAKQVDDVVRTFDQVLE 484



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++Y++M   GV+P   +++ LI    +  R  Q    ++D +  NGF P+ + Y  L+  
Sbjct: 301 NIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKD-LITNGFTPNWSTYAALVRA 359

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM-TAAGAGL 179
            G+ +  D A+ I+ EMK+  +      Y  LL+ CA    +D  + I +DM        
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDP 419

Query: 180 DKFCYAGLITAH 191
           D + ++ LIT +
Sbjct: 420 DSWTFSSLITVY 431



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 15/261 (5%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M   G +P      ++I    +   +       D+ +   +  D   ++ LI + G 
Sbjct: 233 FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGV 292

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N D  + I+EEMK   VKPN   Y  L+++   A +      I +D+   G   +   
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-----AENEMMGVSKEELY 238
           YA L+ A+     R  D A  I   +++ KG S      N      A+N  +  + E   
Sbjct: 353 YAALVRAYGRA--RYGDDALAIYREMKE-KGLSLTVILYNTLLSMCADNRYVDEAFEIFQ 409

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
           ++   E         S L+TVY     AC+    V   E  L  +++    P ++++   
Sbjct: 410 DMKNCETCDPDSWTFSSLITVY-----ACS--GRVSEAEAALLQMREAGFEPTLFVLTSV 462

Query: 299 IRCYLHSGDIDNGHKVFEDYI 319
           I+CY  +  +D+  + F+  +
Sbjct: 463 IQCYGKAKQVDDVVRTFDQVL 483



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT+++     R      +++ DM   +   P    F SLI       R+ +      QM
Sbjct: 388 YNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQM 447

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           +  GF P + V   +I   GK K  D  +R F+++ +  + P+ +   CLLN
Sbjct: 448 REAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLN 499



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 68  MLDGVQPTRD-LFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +L+ ++P+R+ + +++ +   + S+ L+ +    D+M   G  PD A +  +IS   +  
Sbjct: 165 LLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNG 224

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+  FE+M  +  +P+  T   +++A   AG +D   ++          +D   ++
Sbjct: 225 VPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFS 284

Query: 186 GLI 188
            LI
Sbjct: 285 TLI 287


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y  +   Y +++  +    R  L   V  +M+ D   P    + ++I G  K   ++   
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKAL 733

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
                M+  G  P+V  Y  LI   GK   +D ++++F++M      PN  TY  L+N C
Sbjct: 734 NLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHC 793

Query: 157 AAAGQLDPVYAIVRDM 172
            AAG LD  + ++ +M
Sbjct: 794 CAAGLLDEAHLLLDEM 809



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 130/352 (36%), Gaps = 34/352 (9%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +  +MM  G  P    +  +I    +  +++ +F    +MK  G  PDV  Y  LI    
Sbjct: 439 ILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFC 498

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    +QA   F+EM+     PN  TY  LL+A   + QL   + I   M  A    +  
Sbjct: 499 KAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAV 558

Query: 183 CYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
            Y+ LI       +I +A +   K+I             TSG N E++      +     
Sbjct: 559 TYSALIDGLCKAGEIQKACEVYEKLI------------GTSG-NVESDFYFEGNDTCTIA 605

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
           P    V   G  +  L          C   K   A E L  ML    + P+  +    I 
Sbjct: 606 PN---VVTYGALIDGL----------CKAQKVSDAHELLDAMLAAGCE-PNQIVYDALID 651

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRN 360
            +   G IDN  +VF         P    Y +L++     +    + LA   L  M   N
Sbjct: 652 GFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRM---FKDGRLDLAMKVLSEM--LN 706

Query: 361 IFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
              +P + +   ++    K G    A  +  LM+ +  +P++    A  +GL
Sbjct: 707 DSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGL 758



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 1/162 (0%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A N   Y  ++  L   ++     ++ D M+  G +P + ++ +LI G  K  ++ +   
Sbjct: 605 APNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQE 664

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M   G+LP V  Y  LI    K    D A+++  EM      PN  TY  +++  +
Sbjct: 665 VFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLS 724

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
             G+++    ++  M   G   +   Y  LI     K  +AD
Sbjct: 725 KVGEIEKALNLLSLMEEKGCSPNVVTYTALIDG-LGKTGKAD 765



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           +E  R+ +  + S Y  V+T L   ++    FLL   + +M   GV P    +  LI   
Sbjct: 441 KEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLL---FQEMKRAGVNPDVYTYTILIDSF 497

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   ++    + D+M++ G  P+V  Y  L+    K K   QA  IF  M      PN 
Sbjct: 498 CKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNA 557

Query: 147 QTYVCLLNACAAAGQL 162
            TY  L++    AG++
Sbjct: 558 VTYSALIDGLCKAGEI 573



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 102/258 (39%), Gaps = 15/258 (5%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           +D  LD V  T+     +I G M+ S   +   F  +M+ N  +P+V  Y  L+S   K 
Sbjct: 265 EDFNLDTVLCTQ-----MISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKK 319

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           K      RI   M      PN   +  L++    AG     Y +   MT  G+      Y
Sbjct: 320 KQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAY 379

Query: 185 AGLI--TAHTNKIPRAD--DTATKII-ELVEQSKGWSSVETSGNNAENEMMGVSKEELYN 239
              I       ++P A+  D   K+  E++  S   + V T+  N    + GV K E   
Sbjct: 380 NIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTA--NFSRCLCGVGKFEKAF 437

Query: 240 LPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
               E +  R GF+    T   V    C + K V+    L + +K+   +PDVY     I
Sbjct: 438 QILKEMM--RKGFVPDTSTYTKVITFLC-QAKKVEKSFLLFQEMKRAGVNPDVYTYTILI 494

Query: 300 RCYLHSGDIDNGHKVFED 317
             +  +G I+     F++
Sbjct: 495 DSFCKAGLIEQARSWFDE 512



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/303 (19%), Positives = 113/303 (37%), Gaps = 47/303 (15%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y T+++    +++F   + + + MM +G  P   LF+SL+ G          +   
Sbjct: 305 NVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLF 364

Query: 100 DQMKANGFLPDVAVYNYLI-SVCGK-----CKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           ++M   G  P    YN  I S+CG+      +  D   +++EEM       N        
Sbjct: 365 NRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFS 424

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                 G+ +  + I+++M   G   D                    T TK+I  + Q+K
Sbjct: 425 RCLCGVGKFEKAFQILKEMMRKGFVPDT------------------STYTKVITFLCQAK 466

Query: 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273
               VE S          +  +E+          +R G    + T Y +   +  +   +
Sbjct: 467 ---KVEKS---------FLLFQEM----------KRAGVNPDVYT-YTILIDSFCKAGLI 503

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           +   +  + ++    SP+V      +  YL S  +   H +F   + +  +P A  Y+ L
Sbjct: 504 EQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSAL 563

Query: 334 VEG 336
           ++G
Sbjct: 564 IDG 566



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++V+  M   G  P+   + SLI    K  RL        +M  +   P+V  Y  +I  
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDG 722

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG-- 178
             K    ++A+ +   M++    PN  TY  L++     G+ D    + + M + G    
Sbjct: 723 LSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPN 782

Query: 179 -------LDKFCYAGLI 188
                  ++  C AGL+
Sbjct: 783 YVTYRVLINHCCAAGLL 799


>gi|341605725|gb|AEK82965.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D       M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHXMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ A R    +A+ YN +++ L  +R     +++  +M+   VQP + ++ +LI G ++ 
Sbjct: 510 EKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRS 569

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            +L D     + M+  G   D+  YN +I   G CK+   ++A+     M+K    P+  
Sbjct: 570 DKLSDARKIFEFMEEKGGYRDIVAYNAMIK--GYCKSGMMNEAVMCMSSMRKVGCIPDEF 627

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           TY  L++  A  G +      + DM       +   YA LI  + N
Sbjct: 628 TYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCN 673



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 111/311 (35%), Gaps = 46/311 (14%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR    N   Y  ++     +    +  D+  +M+  G  P      +LI G +   
Sbjct: 441 EAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSG 500

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++ +    R++M     +PD  +YN LIS   K +    A  +  EM + +V+P      
Sbjct: 501 QVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQP------ 554

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
                                        DKF Y  LI         +D  A KI E +E
Sbjct: 555 -----------------------------DKFVYTTLIDGFIRSDKLSD--ARKIFEFME 583

Query: 211 QSKGWSSVETSGNNAENEMM-GVSKEELYNLPT-AEYVHRRGGFLSRLLTVYHVAFHACA 268
           +  G+  +      A N M+ G  K  + N         R+ G +    T Y       A
Sbjct: 584 EKGGYRDIV-----AYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFT-YTTLIDGYA 637

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           +  D++A    L  + K R  P++      I  Y + G+ D+   +F        FP   
Sbjct: 638 KKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVV 697

Query: 329 LYATLVEGAMF 339
            Y  L+ G++F
Sbjct: 698 HYTVLI-GSLF 707



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/361 (18%), Positives = 137/361 (37%), Gaps = 50/361 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++  L  +     +  +  +M   G+ P   +++++I    K           +QM 
Sbjct: 349 YGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMV 408

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A+ F PDV  +N LI+   +  + ++A+++  E  + E++PN  +Y  L++     G++ 
Sbjct: 409 ASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVM 468

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               ++ +M   G   D      LI                             +  SG 
Sbjct: 469 VASDLLVEMIGRGHTPDVVTLGALI---------------------------HGLVVSGQ 501

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
             E  M+     E   +P A               +Y+V      + + + A + LL  +
Sbjct: 502 VDEALMVREKMAERQVMPDA--------------NIYNVLISGLCKKRMLSAAKNLLVEM 547

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
            + +  PD ++    I  ++ S  + +  K+FE       +     Y  +++    GY  
Sbjct: 548 LEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIK----GYCK 603

Query: 344 KGMQLAQDTLVNMNS-RNIFLSPRMGSDLLLVAAGEKSGGYTTA-NYIWDLMQARKITPS 401
            GM    + ++ M+S R +   P   +   L+    K G    A  ++ D+M+ R+  P+
Sbjct: 604 SGMM--NEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMK-RRCKPN 660

Query: 402 L 402
           +
Sbjct: 661 I 661



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 120/334 (35%), Gaps = 48/334 (14%)

Query: 31  EYARRNYANNASEYNT--VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           E   R+    A +Y+T  +V  L  + R    R + +    +G  P    ++ LI G  +
Sbjct: 264 EMLARDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCR 323

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              +        +M+  G +P V  Y  +I   G+  +  +   +  EMK+  + PN Q 
Sbjct: 324 RGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQI 383

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
           Y  ++ A           A++  M A+    D   +  LI A      R  D    +  L
Sbjct: 384 YNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFC----REGDVEEALKLL 439

Query: 209 VEQSKGWSSVETSGNNAENEMMGVSKE-ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
            E                     + +E E   L     +H   GF              C
Sbjct: 440 RE--------------------AIRRELEPNQLSYTPLIH---GF--------------C 462

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
              + + A + L+EM+ +   +PDV  +   I   + SG +D    V E     +  P A
Sbjct: 463 VRGEVMVASDLLVEMIGRGH-TPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDA 521

Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
            +Y  L+ G       + +  A++ LV M  + +
Sbjct: 522 NIYNVLISGLC---KKRMLSAAKNLLVEMLEQKV 552


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 66/150 (44%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           +N   YN  +T L   +    +R +  D++L G  P    + SLI       ++ + F  
Sbjct: 744 SNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCL 803

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           RD M   G +P++ VYN LI+   K  N D+A R+F ++ +  + P   TY  L++    
Sbjct: 804 RDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCK 863

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            G+      +   M   G       Y+ LI
Sbjct: 864 GGRTTEALELKDKMREEGICPSSITYSTLI 893



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 143/384 (37%), Gaps = 23/384 (5%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           + +  + + YNT++       +    ++++  M   G  P    + +LI G  K   L +
Sbjct: 530 KGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVE 589

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
               +D  + +G      +YN LI+   + +   +   +  EMK  E+ PN  TY  L+ 
Sbjct: 590 ALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIA 649

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIELVEQS 212
                G +D  Y     M   G   +    + ++++     KI  A+    +I ++   +
Sbjct: 650 GWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIA 709

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL----TVYHVAFHACA 268
               SVE            + K +L +L T + V   G     +      VY++A     
Sbjct: 710 AHAHSVE------------LPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLC 757

Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
           + K++  +  +L  L      PD Y     I      G ++    + +D I +   P   
Sbjct: 758 KSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIV 817

Query: 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANY 388
           +Y  L+     G    G       L N  +R   LSP + +   L+    K G  T A  
Sbjct: 818 VYNALIN----GLCKSGNLDRARRLFNKLARK-GLSPTVVTYNTLIDGYCKGGRTTEALE 872

Query: 389 IWDLMQARKITPSLPAVEAYYNGL 412
           + D M+   I PS        +GL
Sbjct: 873 LKDKMREEGICPSSITYSTLIHGL 896



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N+++++L      F    VY+ M+  G+ P    +  ++    K  R+ + F F  +M+ 
Sbjct: 225 NSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMER 284

Query: 105 NGFLPDVAVYNYLI-------SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           +   P+V  YN LI        VCG       A ++   M +  +  N +TY  L+    
Sbjct: 285 SCCEPNVVTYNSLIDGYVSLGDVCG-------AKKVLALMSEKGIPENSRTYTLLIKGYC 337

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             GQ++    ++  M      +D+  Y  LI A+     R DD
Sbjct: 338 KRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTA-GRVDD 379



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++  L         R +++ +   G+ PT   +++LI G  KG R  +    +
Sbjct: 815 NIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELK 874

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           D+M+  G  P    Y+ LI        S+Q++ +  EM K
Sbjct: 875 DKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMK 914



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D+M   G  P+    +SL+   ++           +QM A G LPD  +++Y I V  
Sbjct: 208 VFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPD--IFSYTIMVNA 265

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CK    D+A    +EM++   +PN  TY  L++   + G +     ++  M+  G   +
Sbjct: 266 YCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPEN 325

Query: 181 KFCYAGLITAHTNK 194
              Y  LI  +  +
Sbjct: 326 SRTYTLLIKGYCKR 339



 Score = 41.6 bits (96), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 2/139 (1%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           ++P    +++L+ G  K       F   D+M   G    V  YN L+       + + A+
Sbjct: 427 LKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHAL 486

Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            I+  M K  V PN  TY  LL+A    G  D    I +D  + G       Y  +I   
Sbjct: 487 HIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGF 546

Query: 192 TN--KIPRADDTATKIIEL 208
               K+ +A +   K+ EL
Sbjct: 547 CKMEKLVQAQEIFLKMKEL 565



 Score = 38.5 bits (88), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +L           +++ M   GV P    + +L+    K               
Sbjct: 469 YNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDAL 528

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           + GF   + +YN +I  CG CK     QA  IF +MK+    P+  TY  L++     G 
Sbjct: 529 SKGFTKSITLYNTMI--CGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGN 586

Query: 162 L 162
           L
Sbjct: 587 L 587


>gi|359487102|ref|XP_002274044.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 390

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 5/166 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           +E  ++    +   YNTV+ ++  S+   F +R V+ +M   G +P    ++++I    +
Sbjct: 196 KEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIR-VFREMKEVGCEPNVVTYNTIIKLLCE 254

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             R+++ +   DQM+  G+ P+V  Y+       K K   Q +R F+ M    V+P   T
Sbjct: 255 NGRIREAYGVFDQMREKGYAPNVITYHCFFGCIEKPK---QILRTFDRMINSGVRPRMDT 311

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           YV L+      G L PV+ + + M   G   D   Y  LI A   K
Sbjct: 312 YVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQK 357


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+    R    N   +N++++  + + +F     + + M+ +G+ P    ++ L+ G   
Sbjct: 72  AQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSM 131

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             R+ +     +++K++G  P+V  +  LIS C + +    A++IF +M+   VKPN  T
Sbjct: 132 QGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTT 191

Query: 149 YVCLLNACAAAGQLDP---------VYAIVRDMTAAGAGLDKFCYAG 186
              LL ACA    L               V D+  A A +D +  AG
Sbjct: 192 ICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAG 238



 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           + T   ++ +++G    S  ++     D+M+     PD   +  L+S C      D+  +
Sbjct: 252 EKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWK 311

Query: 133 IFEEMKK-YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            F+ M++ Y + P  + Y C+++    +G LD     +  M
Sbjct: 312 YFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETM 352


>gi|260780546|gb|ACX50819.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 182

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 9   FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMI 68

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  ++ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 69  DEGFKPDVVTFSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 126

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 IDEAERLFEEMSEKGCTRDSYCYNALIDAFT-KHGKVDEAMT-LFKRMEEEEG 177


>gi|341606829|gb|AEK83517.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 208

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 17  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 76

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 77  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGR 134

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + B+  T + + +E+ +G
Sbjct: 135 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVBEAMT-LFKRMEEEEG 185



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 61  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGXAINSM 120

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 121 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 148


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 4/188 (2%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +  +  N   Y  ++      R       +++DM+  G++P     + ++ G ++  +  
Sbjct: 300 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKS 359

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D       MK+ G  P+V  Y  +I    K  + + AI  F++M    ++P+   Y CL+
Sbjct: 360 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 419

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-KIPRADDTATKIIELVEQS 212
                  +LD VY ++++M   G   D   Y  LI    N K+P   + AT+I   + Q+
Sbjct: 420 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMP---EHATRIYNKMIQN 476

Query: 213 KGWSSVET 220
           +   S+ T
Sbjct: 477 EIEPSIHT 484



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF  +A      ++ +A+++  YN++++ L   R+F  +  V ++M   G+        
Sbjct: 189 RFFCWAA-----EKQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTI 243

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           ++        R +    F + MK   F   V   N L+   G+ K   +A  +F+++K+ 
Sbjct: 244 AMKAFAAAKERKKAVGIF-ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE- 301

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
              PN  TY  LLN       L     I  DM   G   D
Sbjct: 302 RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPD 341


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++ +++   G++P    +++LI    + S L++     D M+A+   PD+  YN +ISV 
Sbjct: 312 ELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVY 371

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           G+C  S +A ++F +++     P+  +Y  LL A A  G ++ V  I  +M   G G D+
Sbjct: 372 GRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDE 431

Query: 182 FCYAGLI 188
             Y  +I
Sbjct: 432 MTYNTMI 438



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A  +  N    YN ++     + RF  ++++ D M   G +P    F++LI   +K   +
Sbjct: 246 AEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAM 305

Query: 93  QDTFFFR--DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
                    ++++ +G  PD   YN LIS C +  N ++A ++F++M+ +  +P+  TY 
Sbjct: 306 MPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYN 365

Query: 151 CLLNA---CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +++    C  +G+ + ++    D+ + G   D   Y  L+ A
Sbjct: 366 AMISVYGRCGLSGKAEQLF---NDLESRGFFPDAVSYNSLLYA 405



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV--GTMKGSRLQDTFFFRDQ 101
           YNT++++ +          V+DDM     QP    ++++I   G    S   +  F  + 
Sbjct: 329 YNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLF--ND 386

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +++ GF PD   YN L+    +  N ++   I+EEM K     +  TY  +++     GQ
Sbjct: 387 LESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQ 446

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKII 206
            +    + RDM ++G   D   Y  LI +   TNKI  A    ++++
Sbjct: 447 NELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEML 493



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 39/230 (16%)

Query: 19   GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
            G++     A   E     +  + S +N+V+    +   F     VY  +  DG++P  D 
Sbjct: 931  GKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDT 990

Query: 79   FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE-- 136
            +++LIV   +  R ++ F    +M+  G  P +  Y  L++  GK +  +QA  +FEE  
Sbjct: 991  YNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQ 1050

Query: 137  ---------------------------------MKKYEVKPNGQTYVCLLNACAAAGQLD 163
                                             MK   V+P   T   L+ +  ++GQ  
Sbjct: 1051 SKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQ 1110

Query: 164  PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                ++ ++   G+ L    Y+ +I A+     R  D    I +L++  K
Sbjct: 1111 EAEKVLSNLKETGSNLSTLPYSSVIDAYL----RNGDYNIGIQKLIQMKK 1156



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 66/134 (49%)

Query: 57   FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116
             F ++ +Y  M   G  PT  L+  +     +G +++D      +M+  GF PD++++N 
Sbjct: 899  IFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNS 958

Query: 117  LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
            ++ +    ++  + I++++ +K+  ++P+  TY  L+       + +  ++++ +M  AG
Sbjct: 959  VLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAG 1018

Query: 177  AGLDKFCYAGLITA 190
                   Y  L+ +
Sbjct: 1019 LEPKLDTYKSLVAS 1032



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR---LQDTF 96
           +A  Y  ++ SL    +      V  +M+  GV+PT   + +LI G  K  +    ++TF
Sbjct: 465 DAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETF 524

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D M  +G  PD   Y+ ++ +  +     +A+ +++EM    +  +   Y  +L   
Sbjct: 525 ---DCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTL 581

Query: 157 AAAGQLDPVYAIVRDM 172
               +++ +  ++RDM
Sbjct: 582 RKVNKVEDIGRVIRDM 597



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 1/181 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +  +  +   YNT++     Q +  L   +Y DM   G  P    +  LI    K 
Sbjct: 420 EEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKT 479

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           +++ +      +M   G  P +  Y+ LI    K     +A   F+ M +  ++P+   Y
Sbjct: 480 NKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAY 539

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +L+      +      + ++M   G  LD   Y  L+     K+ + +D    I ++ 
Sbjct: 540 SVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSLYE-LMLRTLRKVNKVEDIGRVIRDME 598

Query: 210 E 210
           E
Sbjct: 599 E 599


>gi|212275340|ref|NP_001130930.1| uncharacterized protein LOC100192035 [Zea mays]
 gi|195614146|gb|ACG28903.1| hypothetical protein [Zea mays]
 gi|219885707|gb|ACL53228.1| unknown [Zea mays]
 gi|413935208|gb|AFW69759.1| hypothetical protein ZEAMMB73_548432 [Zea mays]
          Length = 748

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 155/385 (40%), Gaps = 26/385 (6%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            A  YN V+ ++  + R  + R +Y+ M+ DGV P    +++LI G     +++      
Sbjct: 207 TALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVF 266

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             MK +G  PDV  YN L++   +  + + A ++F+EM     + N  +Y  ++      
Sbjct: 267 GDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKGYVEG 326

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
            +++   A+  +M   G  L +  +A L+    +   R  +    + ++ E+        
Sbjct: 327 NRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDMAERRL------ 380

Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT---VYHVAFHA-CAELKDVQA 275
           T  + +    +  +  +  +L  A  VH + G    +L     Y V     CA  K   A
Sbjct: 381 TPKDKSVFLRLVTTLCKAGDLDGALEVHWKSGQFKHVLVDPRQYGVLMEGLCAGGKCETA 440

Query: 276 METLLEMLKK----DRKSPDVYIVMQN-IRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
           +E L E+++K      KSP +     N +  +L S       + F   +  +       +
Sbjct: 441 IEVLDELMEKGTLLSPKSPVLEASAYNPVIEFLCSNGSTAKAETFFRQLMKKGVDDKAAF 500

Query: 331 ATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
            +L+ G      P+    AQ+ L  M  R +   P   S  LLV +  K      A    
Sbjct: 501 NSLIRGHAKEGVPEA---AQEILAIMTRREVPTDPE--SHALLVDSFLKKNEPADAKTAL 555

Query: 391 DLMQARKITPSLPAV-----EAYYN 410
           D M  +   PS PA+     EA +N
Sbjct: 556 DSMMQQGHLPS-PALFKSVMEALFN 579



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 9/154 (5%)

Query: 28  GAEEYARRNY--------ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           G E  ARR Y        A + S YNT++      ++      V+ DM   GV P    +
Sbjct: 222 GREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKMETAVRVFGDMKGHGVTPDVTTY 281

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           ++L+   ++   L+      D+M   G   +   YN +I    +    ++A+ +F EM +
Sbjct: 282 NTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAE 341

Query: 140 YEVKPNGQTYVCLLNA-CAAAGQLDPVYAIVRDM 172
             ++ + +T+  L+   C   G++      V DM
Sbjct: 342 KGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDM 375


>gi|413948334|gb|AFW80983.1| hypothetical protein ZEAMMB73_782047 [Zea mays]
          Length = 436

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 1/170 (0%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
            NA  YN ++  +  +  F   R V D+M+  GV+PT   F++L+    +   L      
Sbjct: 159 TNAVSYNIILKGVCHRDGFSGARVVLDEMLARGVRPTVVTFNTLVGSACREGELAAAERL 218

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D+M   G  P+   Y  L+         D A ++  +M+  + +P+   Y  L++ACAA
Sbjct: 219 VDEMTRRGVAPNAVTYALLMQGLCDAGRYDDAKKLLFDMEYRDCQPDVANYGVLMSACAA 278

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
            G  D V  ++ DM       D   Y  LI    +   R D+    ++E+
Sbjct: 279 CGDADGVKGLISDMRKRKMKPDDASYNVLIRCLCDA-GRVDEAHRALVEM 327



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 61/143 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R        +NT+V S   +        + D+M   GV P    +  L+ G    
Sbjct: 185 DEMLARGVRPTVVTFNTLVGSACREGELAAAERLVDEMTRRGVAPNAVTYALLMQGLCDA 244

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R  D       M+     PDVA Y  L+S C  C ++D    +  +M+K ++KP+  +Y
Sbjct: 245 GRYDDAKKLLFDMEYRDCQPDVANYGVLMSACAACGDADGVKGLISDMRKRKMKPDDASY 304

Query: 150 VCLLNACAAAGQLDPVYAIVRDM 172
             L+     AG++D  +  + +M
Sbjct: 305 NVLIRCLCDAGRVDEAHRALVEM 327



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           +++ + ++ ++ SL    R    RD+  +    GV+     ++ ++ G            
Sbjct: 123 SHSNATFHALLHSLVCNGRVDAARDMLPEAPKLGVRTNAVSYNIILKGVCHRDGFSGARV 182

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI--RIFEEMKKYEVKPNGQTYVCLLNA 155
             D+M A G  P V  +N L+     C+  + A   R+ +EM +  V PN  TY  L+  
Sbjct: 183 VLDEMLARGVRPTVVTFNTLVG--SACREGELAAAERLVDEMTRRGVAPNAVTYALLMQG 240

Query: 156 CAAAGQLDPVYAIVRDM 172
              AG+ D    ++ DM
Sbjct: 241 LCDAGRYDDAKKLLFDM 257


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + R Y  N   Y++++  L   +R  L   V   M+ +   P   ++  +I G  K  + 
Sbjct: 698 SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKT 757

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            + +     M+  G  P+V  Y  +I   GK    D+ + +  +M      PN  TY  L
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 153 LNACAAAGQLDPVYAIVRDM 172
           +N C AAG LD  + ++ +M
Sbjct: 818 INHCCAAGLLDDAHQLLDEM 837



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V  L    +    RD+ D M ++G +P   ++ +LI G  K  +L +     
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVF 694

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M   G+ P+V  Y+ LI    K K  D A+++   M +    PN   Y  +++     
Sbjct: 695 TKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKV 754

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           G+ D  Y ++  M   G   +   Y  +I     K  + D    K +EL+ Q
Sbjct: 755 GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGF-GKAGKVD----KCLELMRQ 801



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 62/153 (40%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N    + +   L    +F     +  +MM  G  P    +  +I      S++ + F   
Sbjct: 444 NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLF 503

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++MK+N  +PDV  Y  LI    K     QA + F+EM +    PN  TY  L++A   A
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            ++     +   M + G   +   Y  LI  H 
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 6/160 (3%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  ++     +R+    + +   M+ +G  P+R +F+SLI    +       +   
Sbjct: 333 NVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 100 DQMKANGFLPDVAVYNYLI-SVCGKCKNS-----DQAIRIFEEMKKYEVKPNGQTYVCLL 153
            +M   G  P   VYN LI  +CG  K       + A + + EM    V  N      L 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
                AG+ +  Y+I+R+M + G   D   Y+ +I    N
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCN 492



 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R   A N   Y  ++ +    R+     ++++ M+ +G  P    + +LI G  K 
Sbjct: 539 DEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKS 598

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVY----------------NYLISVCGKCKNSDQAIRI 133
            +++       +M+ N  +PDV +Y                  L+    K     +A  +
Sbjct: 599 GQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDL 658

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            + M     +PN   Y  L++     G+LD    +   M+  G G + + Y+ LI
Sbjct: 659 LDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLI 713



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
           E   + +  + S Y+ V+  L +  +    FLL   +++M  + V P    +  LI    
Sbjct: 470 EMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLL---FEEMKSNHVVPDVFTYTILIDSFC 526

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           K   LQ    + D+M  +G  P+V  Y  LI    K +    A  +FE M      PN  
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVV 586

Query: 148 TYVCLLNACAAAGQLDP---VYAIVR 170
           TY  L++    +GQ++    +YA +R
Sbjct: 587 TYTALIDGHCKSGQIEKACQIYARMR 612



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 21/203 (10%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE    +   +   Y  ++ S          R  +D+M+ DG  P    + +LI   +K 
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKK-------- 139
            ++       + M + G +P+V  Y  LI   G CK+   ++A +I+  M+         
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALID--GHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 140 --YEV------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +++       PN  TY  L++    A ++     ++  M+  G   +   Y  LI   
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 192 TNKIPRADDTATKIIELVEQSKG 214
             K+ + D+      ++ E+  G
Sbjct: 682 C-KVGKLDEAQMVFTKMSERGYG 703


>gi|341606827|gb|AEK83516.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 207

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 17  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 76

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 77  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 134

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +D    +  +M+  G   D +CY  LI A T
Sbjct: 135 IDEAERLFEEMSEKGCTRDSYCYNALIDALT 165



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 61  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSM 120

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 121 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 148


>gi|224576659|gb|ACN57003.1| At1g03560-like protein [Capsella grandiflora]
 gi|224576663|gb|ACN57005.1| At1g03560-like protein [Capsella grandiflora]
          Length = 207

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +      N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158



 Score = 38.9 bits (89), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 40/98 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     +G       + SLI G  K  R+ +     ++M 
Sbjct: 60  YSVVVNGLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMS 119

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K    D+A+ +F+ M++ E
Sbjct: 120 EKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEE 157


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           GG +   F + S    E  R++   N   Y+TV+       R     +++++M    +  
Sbjct: 225 GGQMDLAFQIMS----EMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGL 280

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
            R  +++L+    K  R ++      +M+++G   D   YN L+   GK    ++  R+F
Sbjct: 281 DRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVF 340

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           EEMK   + PN  TY  L++  +  G       + R+   AG   D   Y+ LI A
Sbjct: 341 EEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDA 396



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG-------SRLQDTFFFRDQMKANGFLPD 110
           FLLR++  +    G++P    ++++I    KG       + + D      +M   G   D
Sbjct: 153 FLLREL-GNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQD 211

Query: 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170
           +  YN L+    K    D A +I  EM +  + PN  TY  +++  A AG+LD    +  
Sbjct: 212 IFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFN 271

Query: 171 DMTAAGAGLDKFCYAGLIT 189
           +M  A  GLD+  Y  L++
Sbjct: 272 EMKFASIGLDRVSYNTLLS 290



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+++      RF    +V  +M   G++     +++L+ G  K  + ++     ++MK
Sbjct: 285 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 344

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A    P++  Y+ LI V  K     +A+ +F E KK  +K +   Y  L++A    G ++
Sbjct: 345 AERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVE 404

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
              + + +MT  G   +   Y  +I A
Sbjct: 405 SAVSFLDEMTKEGIRPNVVTYNSIIDA 431



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 61/127 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++ +M+  G++     +++L+    KG ++   F    +M     +P+V  Y+ +I   
Sbjct: 198 NLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGY 257

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    D+A+ +F EMK   +  +  +Y  LL+  A  G+ +    + ++M ++G   D 
Sbjct: 258 AKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDA 317

Query: 182 FCYAGLI 188
             Y  L+
Sbjct: 318 VTYNALL 324



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++    +  L   +  +M    + P    + ++I G  K  RL +     ++MK
Sbjct: 215 YNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK 274

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 D   YN L+S+  K    ++A+ + +EM+   +K +  TY  LL      G+ +
Sbjct: 275 FASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYE 334

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
            V  +  +M A     +   Y+ LI  ++
Sbjct: 335 EVKRVFEEMKAERIFPNLLTYSTLIDVYS 363



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  YN ++     Q ++  ++ V+++M  + + P    + +LI    KG   Q+     
Sbjct: 316 DAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF 375

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            + K  G   DV +Y+ LI     CKN   + A+   +EM K  ++PN  TY  +++A  
Sbjct: 376 REFKKAGLKADVVLYSALIDAL--CKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFG 433

Query: 158 AAGQLDPVYAIVRDMTAAGAG 178
            +G       IV D T +  G
Sbjct: 434 RSG-------IVEDATESEVG 447



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 41/152 (26%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +V+ +    G++    L+ +LI    K   ++    F D+M   G  P+V  YN +I   
Sbjct: 373 EVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAF 432

Query: 122 GKC-------------KNSDQAIRI----------------------------FEEMKKY 140
           G+              K  +Q I+I                            F +M + 
Sbjct: 433 GRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHEL 492

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           ++KPN  T+  +LNAC+     +    ++ ++
Sbjct: 493 DIKPNVVTFSAILNACSRCNSFEDASMLLEEL 524


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 158/406 (38%), Gaps = 36/406 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  RR Y  +   Y+ V+  L         +++   +   GV+     +  +I G  K 
Sbjct: 62  QQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKA 121

Query: 90  SRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           SR+ D    F+      G +PDV  +N L+      +   +A  +FE M K   +PN  +
Sbjct: 122 SRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKII 206
           Y  LL+    AG+LD    +  +M       D   Y   +T     N++  A D   K++
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241

Query: 207 ELVEQSK--GWSSV------ETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGF 252
               ++    +S+V      +     A+N+M+      G+  E        E + R    
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFE--EMISRNHPP 299

Query: 253 LSRLLTVYHVAFHACAELKDVQAMETLLEMLK--KDRKSP---DVYIVMQNIRCYLHSGD 307
            + L   ++   HA  + K +     L + +K  K+   P   + Y +M +  C   +  
Sbjct: 300 SAEL---FNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLC--KAKQ 354

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPR 366
           +D   ++  +       P    Y+ LV+G    G   +    A D L  M+   +F  P 
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDR----ACDLLEEMSKEGVF--PD 408

Query: 367 MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
             +D  ++ A  K+G    A    + M+AR  TP L       +GL
Sbjct: 409 SFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGL 454



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 45/296 (15%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL---PDVAVYNYLISV 120
           +++M+     P+ +LF++LI    K  RL D      +MK+       P++  YN ++  
Sbjct: 289 FEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDN 348

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K K  D+A  +  EM  Y + P+  TY  L++     G+LD    ++ +M+  G   D
Sbjct: 349 LCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPD 408

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
            F  A ++ A  +K  + D                                      Y L
Sbjct: 409 SFTDASILNA-LSKAGKVD--------------------------------------YAL 429

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
              E +  RG   +  L  Y+       +   +    T L  +   + +PDV+     I 
Sbjct: 430 SHLETMKARGS--TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIIT 487

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVN 355
               SG     H +F++ +     P   LY +L++G A  G     ++L + +L  
Sbjct: 488 ALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCK 543



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 4/183 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           EE   RN+  +A  +NT++ ++   +R     LL      M      P  + ++ ++   
Sbjct: 290 EEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNL 349

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K  +L +     ++M   G  PDV  Y+ L+    K    D+A  + EEM K  V P+ 
Sbjct: 350 CKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDS 409

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            T   +LNA + AG++D   + +  M A G+  D   Y  L+     K  R D+  T + 
Sbjct: 410 FTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLC-KAGRIDEAITFLA 468

Query: 207 ELV 209
           ++V
Sbjct: 469 KMV 471



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN +V +L   ++    +++ ++M   G+ P    + +L+ G  K  +L       
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLL 397

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G  PD      +++   K    D A+   E MK     P+  TY  LL+    A
Sbjct: 398 EEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKA 457

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G++D     +  M AA    D F Y  +ITA
Sbjct: 458 GRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A    + +   Y+ +V  L    +     D+ ++M  +GV P      S++    K  
Sbjct: 364 EMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAG 423

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++       + MKA G  PD+  YN L+    K    D+AI    +M   +  P+  +Y 
Sbjct: 424 KVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYT 483

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            ++ A   +GQ    +AI ++M   G   D   Y  L+
Sbjct: 484 IIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 140/382 (36%), Gaps = 31/382 (8%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ Y ++   YN  + +L       L  + +  M   G  P    +  ++ G  K   L 
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK-YEVKPNGQTYVCL 152
                  Q++ +G   +V  Y+ +I  C K    D A+ IF+ M       P+  T+  L
Sbjct: 91  KAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSL 150

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           L    +  ++   + +   M  AG   +   Y+ L+     K  R D+      E+VE+S
Sbjct: 151 LKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLC-KAGRLDEACRLWEEMVEKS 209

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
                V  +               +  L  A  V        +++T    A        D
Sbjct: 210 CVPDLVAYTSF-------------VTGLCKANRVAEACDCCRKMVTKGSKA--------D 248

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
             A  T++ +L K   + +    M    C   SG +D   K FE+ I     P AEL+ T
Sbjct: 249 AVAFSTVIGILCKKGHAEEAQNQMIEHLC--RSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 333 LVEGAMFGY-TPKGMQLAQDTLVNMNS-RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
           L+         P G+ L Q     M S +  +  P + +  ++V    K+     A  + 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQ----RMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 391 DLMQARKITPSLPAVEAYYNGL 412
           + M    ++P +    A  +GL
Sbjct: 363 NEMANYGLSPDVVTYSALVDGL 384



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           + M   G  P    +++L+ G  K  R+ +   F  +M A    PDV  Y  +I+   + 
Sbjct: 433 ETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRS 492

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR------DMTAAGAG 178
             +  A  IF+EM K  V P+   Y  LL+  A  G  D    +++      D       
Sbjct: 493 GQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMV 552

Query: 179 LDKFCYAG 186
           +D  C AG
Sbjct: 553 VDGLCKAG 560


>gi|224576613|gb|ACN56980.1| At1g03560-like protein [Capsella rubella]
          Length = 196

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+      +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T       D A  + + +E+ +G
Sbjct: 127 SYCYNALIDALTKHXKV--DEAMXLFKRMEEEEG 158



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     +G+      + SLI G  K  R+ +     ++M 
Sbjct: 60  YSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMS 119

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K    D+A+ +F+ M++ E
Sbjct: 120 EKGCTRDSYCYNALIDALTKHXKVDEAMXLFKRMEEEE 157


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 48/314 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +RR      + ++M   GV P    F +LI G     +L       D M 
Sbjct: 54  YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 113

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
                PD+  YN LI   G C+    D+A  ++++M   E+ PN  TY  L+++    GQ
Sbjct: 114 NQRLRPDIVTYNTLID--GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 171

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
           ++  +  + +M   G   +   Y  +I  +     R+ +           SKG   ++  
Sbjct: 172 VEDAFGFLDEMINKGILPNIMTYNSIIKGYC----RSGNV----------SKGQKFLQK- 216

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                   M V+K                  +S  L  Y+   H   +   +     LL 
Sbjct: 217 --------MMVNK------------------VSPDLITYNTLIHGYIKEDKMHDAFKLLN 250

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE-LYATLVEGAMF- 339
           M++K++  PDV      I  +   G++     +FE  +C++   P    Y +++ G +  
Sbjct: 251 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK-MCAKGIEPDRYTYMSMINGHVTA 309

Query: 340 GYTPKGMQLAQDTL 353
           G + +  QL  + L
Sbjct: 310 GNSKEAFQLHDEML 323



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   YN+++            +     MM++ V P    +++LI G +K 
Sbjct: 180 DEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE 239

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++ D F   + M+     PDV  YN LI+      N  +A  IFE+M    ++P+  TY
Sbjct: 240 DKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 299

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKF 182
           + ++N    AG     + +  +M   G A  DKF
Sbjct: 300 MSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 333



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 123/341 (36%), Gaps = 46/341 (13%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+ P   ++  +I G  +   + D    RD+M   G LPDV  YN L++   K +    A
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +  EM++  V P+  T+  L++     G+LD    +   M       D   Y  LI  
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI-- 128

Query: 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250
                    D   +  +L + +  W                              +H R 
Sbjct: 129 ---------DGMCRQGDLDKANDLWDD----------------------------MHSRE 151

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
            F + +   Y +   +  E   V+     L+ +      P++      I+ Y  SG++  
Sbjct: 152 IFPNHV--TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSK 209

Query: 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSD 370
           G K  +  + ++  P    Y TL+     GY  +        L+NM  +   + P + + 
Sbjct: 210 GQKFLQKMMVNKVSPDLITYNTLIH----GYIKEDKMHDAFKLLNMMEKEK-VQPDVVTY 264

Query: 371 LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            +L+      G    A +I++ M A+ I P      +  NG
Sbjct: 265 NMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 305


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 124/324 (38%), Gaps = 44/324 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++  A +   YN++++ L S+ +      + ++M   G+ P    F  ++ G  K 
Sbjct: 288 EEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK 347

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + D   + D M      PDV +YN LI V  +    + A+ + E M K  + PN  TY
Sbjct: 348 GMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            CL+   + +G       ++ +M   G   D   Y  LI A   K         K ++L+
Sbjct: 408 NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCK-----GEVRKAVKLL 462

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           +               E   +G+    L                      Y+       +
Sbjct: 463 D---------------EMSEVGLEPNHL---------------------TYNTIIQGFCD 486

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
             ++++   +   ++K RK  +V      I+ +   G +D  + +  + +     P    
Sbjct: 487 KGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546

Query: 330 YATLVEGAM-FGYTP--KGMQLAQ 350
           Y T+ EG M  GYTP  +G  ++Q
Sbjct: 547 YETIKEGMMEKGYTPDIRGCTVSQ 570



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 9/172 (5%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK----G 89
           RR  + +   +NTV++ L    +     DV  D+   G+ P+   ++SLI G  K    G
Sbjct: 184 RRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAG 243

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ--AIRIFEEMKKYEVKPNGQ 147
           +        ++ ++A G  P    +  LI+  G CKNS+   A+R+FEEMK+  +  +  
Sbjct: 244 NMYHVDMLLKEMVEA-GISPTAVTFGVLIN--GYCKNSNTAAAVRVFEEMKQQGIAASVV 300

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
           TY  L++   + G+++    ++ +M   G   ++  +  ++     K   AD
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352


>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
          Length = 747

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 156/397 (39%), Gaps = 44/397 (11%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A  A  YN V+ ++  + R  + R +Y+ M+ D V P    +++LI G     +++    
Sbjct: 204 ARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALR 263

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               MK +G  PDV  YN L++   +  + + A ++F+EM       N  +Y  ++    
Sbjct: 264 VFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYV 323

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
            AG+++    +  +M   G  L +  +A L       +P   D   +++E         +
Sbjct: 324 EAGKVEEAVGLFSEMGEKGLRLSEKTFAAL-------MPGLCDDEGRVVE---------A 367

Query: 218 VETSGNNAENEMMGVSKEELYNLPT----------AEYVHRRGGFLSRLLT---VYHVAF 264
            +   + AE  +    K     L T          A  VH++ G    +L     Y V  
Sbjct: 368 RKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVDPRQYGVLM 427

Query: 265 HA-CAELKDVQAMETLLEMLKK----DRKSPDVYIVMQN-IRCYLHSGDIDNGHKVFEDY 318
            + CA  K   A+E + E+L+K      KSP +     N +  YL S    +  + F   
Sbjct: 428 ESLCAGGKCDGAVEVMDELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQ 487

Query: 319 ICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGE 378
           +  +       + +L+ G      P+    AQ+ L  M  R +   P   S  LLV +  
Sbjct: 488 LMKKGVDDKAAFNSLIRGHAKEGVPEA---AQEILAIMTRRGVRTDPE--SHALLVDSFL 542

Query: 379 KSGGYTTANYIWDLMQARKITPS----LPAVEAYYNG 411
           K      A    D M  +   PS    +  + A +NG
Sbjct: 543 KKNEPADAKTALDSMMEQGHVPSPSLFMSVMVALFNG 579


>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 466

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 3/166 (1%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y    S Y  ++T L   ++     +++D ++ D ++PT ++F +LI    K + L+  F
Sbjct: 116 YTAEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALITVFTKSNLLKKAF 175

Query: 97  FFRDQMKA-NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
              +QM+  +G LPD   Y  +I  C      DQA ++F EM +  V+P   TY  L+  
Sbjct: 176 EVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVEPTIVTYNTLIFG 235

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT--NKIPRAD 199
              AG    +  ++  M A G   D   +  LI      N+IP  +
Sbjct: 236 YGKAGLFAEIEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEME 281



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 1/148 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +NT++       R   +   Y+ ++  G+       +SLI    +           D M+
Sbjct: 264 WNTLIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMR 323

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              +      YN +I + GK +  +Q    F+ MK   +KPN  T+  +L+A    G+  
Sbjct: 324 RYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWH 383

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +  I+R +    A  D   Y   I AH
Sbjct: 384 KIEKIMRQVRHYNAA-DTAVYNAAIDAH 410



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R +Y      YN ++      R+   +   +  M   G++P    F S++    K     
Sbjct: 324 RYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWH 383

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
                  Q++      D AVYN  I    +  + +   ++FEEMK   V P+G TY  L+
Sbjct: 384 KIEKIMRQVRHYN-AADTAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLI 442

Query: 154 NA 155
            A
Sbjct: 443 EA 444


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 124/324 (38%), Gaps = 44/324 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++  A +   YN++++ L S+ +      + ++M   G+ P    F  ++ G  K 
Sbjct: 288 EEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK 347

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + D   + D M      PDV +YN LI V  +    + A+ + E M K  + PN  TY
Sbjct: 348 GMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            CL+   + +G       ++ +M   G   D   Y  LI A   K         K ++L+
Sbjct: 408 NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCK-----GEVRKAVKLL 462

Query: 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
           +               E   +G+    L                      Y+       +
Sbjct: 463 D---------------EMSEVGLEPNHL---------------------TYNTIIQGFCD 486

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
             ++++   +   ++K RK  +V      I+ +   G +D  + +  + +     P    
Sbjct: 487 KGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGIT 546

Query: 330 YATLVEGAM-FGYTP--KGMQLAQ 350
           Y T+ EG M  GYTP  +G  ++Q
Sbjct: 547 YETIKEGMMEKGYTPDIRGCTVSQ 570



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 9/172 (5%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK----G 89
           RR  + +   +NTV++ L    +     DV  D+   G+ P+   ++SLI G  K    G
Sbjct: 184 RRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAG 243

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ--AIRIFEEMKKYEVKPNGQ 147
           +        ++ ++A G  P    +  LI+  G CKNS+   A+R+FEEMK+  +  +  
Sbjct: 244 NMYHVDMLLKEMVEA-GISPTAVTFGVLIN--GYCKNSNTAAAVRVFEEMKQQGIAASVV 300

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
           TY  L++   + G+++    ++ +M   G   ++  +  ++     K   AD
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMAD 352


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   YN+++ +L   +      +V   M+ +GV P    ++S++ G     
Sbjct: 224 EMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + ++   F  +M ++G  PDV  YN L+    K     +A ++F+ M K  +KP   TY 
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            LL   A  G L  ++ ++  M   G   + + ++ LI A+  +
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 67/165 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +   +R      + Y T++    ++     +  + D M+ +G+ P   +F  LI    K 
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++        +M+  G  PD   Y  +I +  K    + A+R FE+M    + P    Y
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVY 447

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L+++     + D    ++ +M   G  LD   +  +I +H  +
Sbjct: 448 NSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKE 492



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 144/388 (37%), Gaps = 41/388 (10%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFF 97
           N   YN ++  L  + R     ++   M  DG     D+  + ++I G  K   L   + 
Sbjct: 161 NVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYG 220

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
              +M   G LP+V  YN +I+   K +  D+A+ +   M K  V PN +TY  +++   
Sbjct: 221 TYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYC 280

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
           ++GQ       ++ M + G   D   Y  L+           D   K     E  K + S
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLM-----------DYLCKNGRCTEARKMFDS 329

Query: 218 VETSGNNAENEMMG------------VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
           +   G   E    G            V    L +L     +H      S L+  Y     
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY----- 384

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
             A+   V     +   +++   +PD       I     SG +++  + FE  I  E+  
Sbjct: 385 --AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DERLS 441

Query: 326 PAEL-YATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGY 383
           P  + Y +L+    +F    K    A++ ++ M  R I L     +   ++ +  K G  
Sbjct: 442 PGNIVYNSLIHSLCIFDKWDK----AKELILEMLDRGICLDTIFFNS--IIDSHCKEGRV 495

Query: 384 TTANYIWDLMQARKITPSLPAVEAYYNG 411
             +  ++DLM    + P++       +G
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDG 523



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N+++ S   + R      ++D M+  GV+P    + +LI G     ++ +       M 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           + G  PD   YN LI+  G CK S  + A+ +F EM+   V P+  TY  +L  
Sbjct: 542 SVGMKPDCVTYNTLIN--GYCKISRMEDALVLFREMESSGVSPDIITYNIILQG 593



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++ SL    ++   +++  +M+  G+      F+S+I    K  R+ ++    D M 
Sbjct: 447 YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  P++  Y+ LI         D+A ++   M    +KP+  TY  L+N      +++
Sbjct: 507 RIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
               + R+M ++G   D   Y
Sbjct: 567 DALVLFREMESSGVSPDIITY 587



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TV+  L    R       ++ M+ + + P   +++SLI       +         +M 
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   D   +N +I    K     ++ ++F+ M +  VKPN  TY  L++    AG++D
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMD 531

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
               ++  M + G   D   Y  LI  +  KI R +D      E+  +S G S
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTLINGYC-KISRMEDALVLFREM--ESSGVS 581


>gi|260780426|gb|ACX50759.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780428|gb|ACX50760.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780432|gb|ACX50762.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780434|gb|ACX50763.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780436|gb|ACX50764.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780438|gb|ACX50765.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780440|gb|ACX50766.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780442|gb|ACX50767.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780444|gb|ACX50768.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780446|gb|ACX50769.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780448|gb|ACX50770.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780450|gb|ACX50771.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780452|gb|ACX50772.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780454|gb|ACX50773.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780456|gb|ACX50774.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780458|gb|ACX50775.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780460|gb|ACX50776.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780462|gb|ACX50777.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780464|gb|ACX50778.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780466|gb|ACX50779.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780470|gb|ACX50781.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780472|gb|ACX50782.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780474|gb|ACX50783.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780476|gb|ACX50784.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780478|gb|ACX50785.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780480|gb|ACX50786.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780482|gb|ACX50787.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780486|gb|ACX50789.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780488|gb|ACX50790.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780490|gb|ACX50791.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780492|gb|ACX50792.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780494|gb|ACX50793.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780498|gb|ACX50795.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780500|gb|ACX50796.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780502|gb|ACX50797.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780504|gb|ACX50798.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  ++ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTFSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDAFT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 4/163 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R        Y+ V+  L    R      V+++M   G +    ++ +LI    K 
Sbjct: 319 QEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKN 378

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             + +     ++MK  GF PD   Y  +++  G CK+   D+A+  FE  K  EV  N  
Sbjct: 379 GNVNEAINLFERMKGEGFEPDDVTYGVIVN--GLCKSGRLDEAVEYFEFCKDNEVAVNAM 436

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            Y  L++    AG++D       +M   G   D +CY  LI A
Sbjct: 437 FYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDA 479



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 1/178 (0%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +RN   +   Y T++ +  S+  F     +Y +M   G++     +  +I G  K  R  
Sbjct: 288 KRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTV 347

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           +     + M   G   +VA+Y  LI   GK  N ++AI +FE MK    +P+  TY  ++
Sbjct: 348 EGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIV 407

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           N    +G+LD               ++   Y+ LI     K  R D+      E+VE+
Sbjct: 408 NGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDG-LGKAGRVDEAEKFFEEMVER 464



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 72/158 (45%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E+  + +       N+++ S  +      L  V+  M   G++P+   F+ L+ G +   
Sbjct: 180 EFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSM 239

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            ++      + M+     PDV  YN +I    K  N+ +A+  F +M+K  ++P+  TY+
Sbjct: 240 FIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYL 299

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            L+ AC + G  D    + ++M   G  +    Y+ +I
Sbjct: 300 TLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVI 337



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           ++++ M  +G +P    +  ++ G  K  RL +   + +  K N    +   Y+ LI   
Sbjct: 386 NLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGL 445

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           GK    D+A + FEEM +     +   Y  L++A A +G+++    + + M   G     
Sbjct: 446 GKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTV 505

Query: 182 FCY----AGLITAHTNK 194
           + Y    +GL   H N+
Sbjct: 506 YTYTILISGLFKEHRNE 522



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 86/426 (20%), Positives = 164/426 (38%), Gaps = 49/426 (11%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           RFF  +       ++NY +    Y +++  L+    F  +R ++ +    G   T    +
Sbjct: 140 RFFWWAG-----KQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAAN 194

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           SLI        +++  +   +MK +G  P +  +N+L++        + A R+FE M+  
Sbjct: 195 SLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECG 254

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           ++ P+  +Y  ++     AG          DM       DK  Y  LI A  ++     D
Sbjct: 255 KIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSE--GNFD 312

Query: 201 TATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE--ELYNLPTAEYVHRRGGFLSRLLT 258
           +   + + +E+      +E   +     + G+ K+   +      E ++++G      + 
Sbjct: 313 SCLHLYQEMEE----RGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKG--CKANVA 366

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFE 316
           +Y     A  +  +V     L E +K +   PD   Y V+ N  C   SG +D   + FE
Sbjct: 367 IYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLC--KSGRLDEAVEYFE 424

Query: 317 DYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFL----------SP 365
               +E    A  Y++L++G    G   +  +  ++ +     ++ +           S 
Sbjct: 425 FCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSG 484

Query: 366 RMGSDLLLVAAGEKSGGYTT-------------------ANYIWDLMQARKITPSLPAVE 406
           +M   L+L    EK G   T                   A  +WDLM  + ITP+  +  
Sbjct: 485 KMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFR 544

Query: 407 AYYNGL 412
           A   GL
Sbjct: 545 ALSVGL 550



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  +++ L  + R      ++D M+  G+ PT   F +L VG     ++       D++ 
Sbjct: 508 YTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELA 567

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +P+ A +  +I+V  K   ++QA ++ + +     +  G+    L+NA   AG  D
Sbjct: 568 PMGVIPETA-FEDMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGNAD 626

Query: 164 PVYAIVRDMTAAGAGLDK 181
               ++   +  G G D+
Sbjct: 627 LAMKLMH--SKIGIGYDR 642


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +A  YN ++     + +  +     +DM+  GV  T   ++ L+       R  D + 
Sbjct: 216 APSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYA 275

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
             ++M+ NG  PDV  YN LI+  G CK  N  +A+ +FEEM +  V+    TY  L+ A
Sbjct: 276 VLEEMQRNGLSPDVFTYNILIN--GYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYA 333

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            +  GQ+     + +     G   D   Y  LI +H
Sbjct: 334 FSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSH 369



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 1/162 (0%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRL 92
           R   A +   Y T+++      R      V+D+M+  G V P+  ++++LI G     +L
Sbjct: 176 RGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKL 235

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
                +R+ M   G    VA YN L+        +  A  + EEM++  + P+  TY  L
Sbjct: 236 DVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNIL 295

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           +N     G       +  +M+  G       Y  LI A + K
Sbjct: 296 INGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRK 337



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 141/368 (38%), Gaps = 51/368 (13%)

Query: 11  HKSVGGALGRRFFVTSAGAEEYAR--RNYANNAS--------EYNTVVTSLTSQRRFFLL 60
           H +   +L       SA A  +A   R YA   S          + +++SL S   F L 
Sbjct: 45  HLAASPSLPHLLLTASAAARPHATSLRFYAQLKSLSVPIPVASLHPLLSSLPSAPAFALF 104

Query: 61  RDVYD----------DMMLDGV----QPTRDL-------------FHSLIVGTMKGSRLQ 93
            D+Y           ++ML  +    +P R L             ++++I G     R+Q
Sbjct: 105 ADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPRPNAVTYNTVIAGFCARGRVQ 164

Query: 94  DTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVC 151
                 R+  +  G  PD   Y  LIS   K    + A ++F+EM  + EV P+   Y  
Sbjct: 165 AALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNA 224

Query: 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           L+      G+LD       DM   G  +    Y  L+ A      RA D    + E+  Q
Sbjct: 225 LIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMD-GRASDAYAVLEEM--Q 281

Query: 212 SKGWSSVETSGNNAENEMMGVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
             G S    + N   N   G  KE  E   L   E + R+G  +      Y    +A + 
Sbjct: 282 RNGLSPDVFTYNILIN---GYCKEGNEKKALEVFEEMSRKG--VRATAVTYTSLIYAFSR 336

Query: 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL 329
              VQ  + L ++  K    PDV +    I  +   GD++   ++  + +  ++ PP ++
Sbjct: 337 KGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAE-MEKKRIPPDDV 395

Query: 330 -YATLVEG 336
            Y TL+ G
Sbjct: 396 TYNTLIRG 403


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 43/272 (15%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +M  +  +PT   F  +I G  +   ++      D M+ +G +P V  +N LI    + +
Sbjct: 576 EMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKR 635

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
             ++AI I +EM    V PN  TY  +++  AA G     +     +   G  LD + Y 
Sbjct: 636 QMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYE 695

Query: 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE-ELYNLPTAE 244
            L+ A                                +      + V+KE    N+P   
Sbjct: 696 ALLKA-----------------------------CCKSGRMQSALAVTKEMSAQNIP--- 723

Query: 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
               R  F      VY++     A   DV     L++ +K+    PD++     I     
Sbjct: 724 ----RNTF------VYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCK 773

Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +GD+    K+ E+   S   P  + Y TL+ G
Sbjct: 774 AGDMLRASKMMEEMETSGVKPNVKTYTTLIHG 805



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%)

Query: 78  LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           +++ LI G  +   + +      QMK  G  PD+  Y   I+ C K  +  +A ++ EEM
Sbjct: 728 VYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEM 787

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           +   VKPN +TY  L++  A A   +      ++M  AG   DK  Y  L+TA
Sbjct: 788 ETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTA 840



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           DV+D M   G  PT   F++LI+G ++  +++      D+M   G  P+   Y  ++   
Sbjct: 607 DVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGY 666

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
               ++ +A   F +++   ++ +  TY  LL AC  +G++    A+ ++M+A     + 
Sbjct: 667 AALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 726

Query: 182 FCYAGLI 188
           F Y  LI
Sbjct: 727 FVYNILI 733



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 6/160 (3%)

Query: 27  AGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           A  +E + +N   N   YN ++     +   +   D+   M   GV+P    + S I   
Sbjct: 712 AVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINAC 771

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K   +       ++M+ +G  P+V  Y  LI    +    ++A+R F+EMK   +KP+ 
Sbjct: 772 CKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDK 831

Query: 147 QTYVCLLNACAAAGQLDPVY------AIVRDMTAAGAGLD 180
             Y CL+ A  +   +   Y      +I ++M  +G  +D
Sbjct: 832 AVYHCLMTALLSRATVTEAYVRPGILSICKEMIESGLIVD 871



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 118/296 (39%), Gaps = 10/296 (3%)

Query: 43  EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           EY  +V+    +      R  ++ M   G++PT  ++ SLI     G  +++      +M
Sbjct: 308 EYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKM 367

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K  G    +  Y+ ++    K  N+D A R F+E K      N   Y  ++ A      +
Sbjct: 368 KEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNM 427

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           D   A+VR+M   G       Y  ++  +T  +   ++    + E +++     SV + G
Sbjct: 428 DQAEALVREMEGEGIDAPIDIYHTMMDGYT--MVGNEEKCLTVFERLKECGFAPSVVSYG 485

Query: 223 N--NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280
              N   ++  +SK     L  ++ +   G  +   +  Y +  +   +LKD      + 
Sbjct: 486 CLINLYAKVGKISKA----LEVSKMMESAG--IKHNMKTYSMLINGFLKLKDWANAFAIF 539

Query: 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           E + KD   PDV +    IR +   G +D    + ++       P +  +  ++ G
Sbjct: 540 EDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHG 595



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 6/179 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           +N ++  L  +R+     ++ D+M L GV P    + +++ G          F +  +++
Sbjct: 624 FNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLR 683

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G   DV  Y  L+  C K      A+ + +EM    +  N   Y  L++  A  G + 
Sbjct: 684 DEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVW 743

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT--ATKIIELVEQSKGWSSVET 220
               +++ M   G   D   Y   I    N   +A D   A+K++E +E S    +V+T
Sbjct: 744 EAADLMQQMKQGGVKPDIHTYTSFI----NACCKAGDMLRASKMMEEMETSGVKPNVKT 798


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           +F++   GA     + +  N   YN ++ +L    +     D + +M L    P    + 
Sbjct: 181 KFYLHVFGANS---KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYS 237

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           +L+ G  K  R+ +  F  D+M+A G LP+   +N LI    K  +  +A ++ + M   
Sbjct: 238 TLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK 297

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
              PN  TY  L++     G+LD   +++  M ++    ++  Y  +I     K  RA+D
Sbjct: 298 GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLV-KQRRAED 356

Query: 201 TATKIIELVEQSK 213
               ++ + E+ +
Sbjct: 357 GVHILMSMEERGQ 369



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++  L  + +      + + M+     P +  + ++I G +K  R +D     
Sbjct: 302 NEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHIL 361

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+  G   +  +Y+ LIS   K   S+ A+R+++EM +   KPN   Y   ++     
Sbjct: 362 MSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRD 421

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            + D    I+++M + G   + F Y+ L+     K
Sbjct: 422 EKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKK 456



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 68/154 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   Y+++++ L  + +      ++ +M   G +P   ++ + I G  +  +  +
Sbjct: 367 RGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDE 426

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +M + GFLP+   Y+ L+    K  +S +AI +++EM   +++ N      LLN
Sbjct: 427 AEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 486

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               +G+L     +   M   G   D   Y+ +I
Sbjct: 487 GLCESGRLREALTVWTHMLGEGLKPDVVAYSSMI 520



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 10/186 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSL----TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           +E   + +  NA  Y++++        SQ+       V+ +MM   ++        L+ G
Sbjct: 432 QEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL----VWKEMMSQDMRHNVVCCSVLLNG 487

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK-- 143
             +  RL++       M   G  PDV  Y+ +I       + D+ +++F EM+  E K  
Sbjct: 488 LCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSR 547

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           P+  TY  L NA      L     ++  M   G   D       +     +I    D   
Sbjct: 548 PDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRL 607

Query: 204 KIIELV 209
            + ELV
Sbjct: 608 FLDELV 613


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 2/176 (1%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           + R++  +   Y+ ++              +Y  M+     P    +++ + G M+  R+
Sbjct: 474 SERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRI 533

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
            D     ++M A G  PDV  Y+ LI      +  DQA  +FE M     +PN  TY CL
Sbjct: 534 ADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCL 593

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKII 206
           L+      + D  + + R M   G   D+  Y  L+    N  KI +A +   +++
Sbjct: 594 LHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMV 649



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 20/275 (7%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   N + YN  +  L  + R    + VY++M+  G  P    + +LI G     +    
Sbjct: 512 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQA 571

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLL 153
               + M + G  P+   YN L+   G CK S  D+A  +F +M +    P+  TY  LL
Sbjct: 572 HELFETMISRGCRPNAVTYNCLLH--GLCKESKPDEAHELFRKMVERGCDPDRVTYTTLL 629

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
                 G+++    +  +M + G   D   Y  L+             A K  E  +  +
Sbjct: 630 YGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFR--------AGKPGEAKQLFQ 681

Query: 214 GWSSVETSGNNAENEMM--GVSKEELYN--LPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269
              S +   +   + +M  G+SK +  +  +   E + +  G    L+T   + F  C E
Sbjct: 682 VMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGE 741

Query: 270 LKDVQAMETLLEMLKKDRKSPDVY---IVMQNIRC 301
            +  +AM+   E + + + SPD +   ++++ I+C
Sbjct: 742 QRLSEAMKVFKE-IDRLKLSPDPHAFNVLLEAIKC 775



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 107/259 (41%), Gaps = 7/259 (2%)

Query: 79  FHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
           ++SL+    K  ++   F  F   +    F+PDV  Y+ LI    K     +A +++++M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197
                 PN  TY   LN     G++     +  +M AAG   D   Y+ LI  H   + R
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLI--HGFSLAR 566

Query: 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL 257
             D A ++ E +  S+G      + N   + +   SK +  +    + V R  G     +
Sbjct: 567 KHDQAHELFETM-ISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER--GCDPDRV 623

Query: 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           T   + +  C   K  QA+E   EM+ K    PDV      ++ +  +G      ++F+ 
Sbjct: 624 TYTTLLYGFCNVGKIEQAVEVFDEMVSKGH-DPDVVAYNCLLKGFFRAGKPGEAKQLFQV 682

Query: 318 YICSEKFPPAELYATLVEG 336
            +  +  P    +  +++G
Sbjct: 683 MVSRQCKPDTVSHNIMIDG 701



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 2/187 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE      + +   Y+T++   +  R+     ++++ M+  G +P    ++ L+ G  K 
Sbjct: 541 EEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKE 600

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
           S+  +      +M   G  PD   Y  L+         +QA+ +F+EM      P+   Y
Sbjct: 601 SKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAY 660

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
            CLL     AG+      + + M +     D   +  +I    +K  R DD A ++ E +
Sbjct: 661 NCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDG-LSKAKRLDD-AVEVFERM 718

Query: 210 EQSKGWS 216
           EQ  G S
Sbjct: 719 EQDHGCS 725



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 1/175 (0%)

Query: 15  GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
           G +L R+        E    R    NA  YN ++  L  + +     +++  M+  G  P
Sbjct: 561 GFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDP 620

Query: 75  TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
            R  + +L+ G     +++      D+M + G  PDV  YN L+    +     +A ++F
Sbjct: 621 DRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLF 680

Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA-AGAGLDKFCYAGLI 188
           + M   + KP+  ++  +++  + A +LD    +   M    G   D   Y  LI
Sbjct: 681 QVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 735



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 5/142 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
           +QP+    HS+I    K  R+       + M   G+ PD+A ++ LI+   K     +A 
Sbjct: 370 IQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQ 429

Query: 132 RIFEEM--KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLI 188
              + M  K      +  +Y  LLN+   A ++   +AI   M +  + + D   Y+ LI
Sbjct: 430 EFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILI 489

Query: 189 T--AHTNKIPRADDTATKIIEL 208
                 +++ RA+    ++I+L
Sbjct: 490 DGFCKIDELGRAEKLYKQMIDL 511



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 76  RDLFHSLIVGTMKGSRLQDTFFFRDQ----------MKANGFLPDVAVYNYLISVCGKCK 125
           RDL   + V  M    L   F  +D+          M  +G  PD  +Y+Y++    K +
Sbjct: 224 RDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLE 283

Query: 126 NSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDM 172
           N D+A ++F EM      P N   +   L+    +G+++  +   R M
Sbjct: 284 NLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTM 331


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT+V +            +   M   G++P    F+S++ G  K  +++D     
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVF 283

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G  PD   YN L+    K   S +A+ +F EM +  + P+  T+  L++    A
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G L+    +VR M   G  +++  +  LI     K
Sbjct: 344 GNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKK 378



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 37  YANNASEYNTVV-----TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM-KGS 90
           Y  +   YN V+      SLTS RRFF      D M+ DGV P    ++ L+     +G 
Sbjct: 152 YVPSVLAYNAVLLALSDASLTSARRFF------DSMLSDGVAPNVYTYNILVRALCGRGH 205

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R +     RD M+  G  P+V  YN L++   +    D A R+   M++  +KPN  T+ 
Sbjct: 206 RKEALSILRD-MRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFN 264

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            ++N    AG+++    +  +M   G   D   Y  L+
Sbjct: 265 SMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLV 302



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--Q 129
           ++P+   +++LI G     R+ +      +M+A G  PDV  Y+ +IS    CKN D   
Sbjct: 396 IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIIS--AYCKNCDTHS 453

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A  + ++M +  V P+  TY  L+       +L   + + ++M   G   D+F Y  LI 
Sbjct: 454 AFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 513

Query: 190 AHTNK 194
            H  +
Sbjct: 514 GHCKE 518



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R   A +   YNT+V              V+ +M   G+ P    F SLI    K 
Sbjct: 284 DEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L+       QM+  G   +   +  LI   G CK    D A+     MK+  +KP+  
Sbjct: 344 GNLERAVTLVRQMRERGLQMNEVTFTALID--GFCKKGFLDDALLAVRGMKQCRIKPSVV 401

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            Y  L+N     G++D    ++ +M A G   D   Y+ +I+A+
Sbjct: 402 CYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 445



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y++++  L  ++R      ++ +M+  G+QP    + SLI G  K   ++      
Sbjct: 469 DAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLH 528

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M   G LPDV  Y+ LI+   K   + +A ++  ++   +  P    Y  L++ C  A
Sbjct: 529 DKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKA 588

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            +L  V A+++           FC  GL+
Sbjct: 589 -ELKSVLALLKG----------FCMKGLM 606



 Score = 41.2 bits (95), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
           G++P V  YN ++        +  A R F+ M    V PN  TY  L+ A    G     
Sbjct: 151 GYVPSVLAYNAVLLALSDASLT-SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITA 190
            +I+RDM  AG G +   Y  L+ A
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAA 234



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 47/118 (39%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+Q     F +LI G  K   L D       MK     P V  YN LI+        D+A
Sbjct: 360 GLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEA 419

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             +  EM+   +KP+  TY  +++A          + + + M   G   D   Y+ LI
Sbjct: 420 RELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 477



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+T++++           ++   M+  GV P    + SLI       RL D       M 
Sbjct: 438 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMI 497

Query: 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             G  PD   Y  LI   G CK  N + A+ + ++M K  V P+  TY  L+N
Sbjct: 498 KLGLQPDEFTYTSLID--GHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLIN 548


>gi|154346372|ref|XP_001569123.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066465|emb|CAM44258.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 278

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 76  RDLFH--SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           R++FH  +++    +  ++        QMK N   P+V  Y  LI+ C   KN D A+RI
Sbjct: 48  RNVFHYTTVLTACTRAGQMDAAMTVFRQMKVNQVTPNVYTYTTLINGCANAKNLDLALRI 107

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           F EM+  EV PN +T   L++ C+  GQ
Sbjct: 108 FAEMRLLEVPPNVKTMTALISVCSRCGQ 135



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y TV+T+ T   +      V+  M ++ V P    + +LI G      L       
Sbjct: 49  NVFHYTTVLTACTRAGQMDAAMTVFRQMKVNQVTPNVYTYTTLINGCANAKNLDLALRIF 108

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+     P+V     LISVC +C    +  ++ ++ ++  + PN  TY   ++ C  A
Sbjct: 109 AEMRLLEVPPNVKTMTALISVCSRCGQWKKGFQVLDQCEELFIAPNALTYTAAMDGCRRA 168

Query: 160 GQLDPVYAIV-RDMT 173
               P  A++ R MT
Sbjct: 169 CVCTPAVALLERRMT 183


>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
 gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
 gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
          Length = 747

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 71/151 (47%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A  A  YN V+ ++  + R  + R +Y+ M+ D V P    +++LI G     +++    
Sbjct: 204 ARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALR 263

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               MK +G  PDV  YN L++   +  + + A ++F+EM       N  +Y  ++    
Sbjct: 264 VFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYV 323

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            AG+++    +  +M   G  L +  +A L+
Sbjct: 324 EAGKVEEAVGLFSEMGEKGLRLSEKTFAALM 354


>gi|341606823|gb|AEK83514.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 208

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 17  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 76

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 77  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 134

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +D    +  +M+  G   D +CY  LI A T
Sbjct: 135 IDEAERLFEEMSEKGCTRDSYCYNALIDALT 165



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 61  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSM 120

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 121 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 148


>gi|341606825|gb|AEK83515.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 206

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 16  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 75

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 76  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 133

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +D    +  +M+  G   D +CY  LI A T
Sbjct: 134 IDEAERLFEEMSEKGCTRDSYCYNALIDALT 164



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    K
Sbjct: 1   YQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAK 60

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++   
Sbjct: 61  SGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMF 120

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQ 211
           Y+ LI     K  R D+      E+ E+
Sbjct: 121 YSSLIDG-LGKAGRIDEAERLFEEMSEK 147


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
            + + F    A  +E  +R    N   Y  ++ +L    R     D +D +  DGV P  
Sbjct: 375 CMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDA 434

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++SLI    +  RL+D +   ++M+  G  P+V  +N LIS       ++ A+++  +
Sbjct: 435 SFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK 494

Query: 137 MKKYEVKPNGQTYVCLLNACA 157
           M++    P+ +TY  LL  C 
Sbjct: 495 MEEQSCNPDIKTYTPLLKLCC 515



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 28  GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
           G  +  R     + + +NT+V      R      D  ++M   G  P+   + SL+    
Sbjct: 316 GVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC 375

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                Q  +   D+M+     P+V  Y  L+   GK   + +A+  F+++K+  V P+  
Sbjct: 376 MEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDAS 435

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
            Y  L+     AG+L+  Y++V +M   G   +   +  LI+A  +   +A++    +++
Sbjct: 436 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDH-SQAENALKLLVK 494

Query: 208 LVEQS 212
           + EQS
Sbjct: 495 MEEQS 499



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +  ++ +   Y ++V +   ++ F  +  + D+M      P    +  L+    K 
Sbjct: 353 EEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKA 412

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++     D++K +G  PD + YN LI + G+    + A  + EEM+   + PN  T+
Sbjct: 413 GRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTF 472

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++A     Q +    ++  M       D   Y  L+
Sbjct: 473 NTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLL 511



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +AS YN+++  L    R      V ++M   G+ P    F++LI      S+ ++   
Sbjct: 431 APDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALK 490

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE--EMKKYEVKPNGQTYVCLLNA 155
              +M+     PD+  Y  L+ +C  CK     I +F    M + ++ P+  TY  L++ 
Sbjct: 491 LLVKMEEQSCNPDIKTYTPLLKLC--CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSW 548

Query: 156 CAAAGQLDPVYAIVRDMTAAG 176
               G++      + +M + G
Sbjct: 549 LCRNGKVAQSCLFLEEMVSKG 569


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++ +L   +      +V   M+  GV P    ++S++ G     + ++   F 
Sbjct: 122 NVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFL 181

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M+++G  PDV  YN L+    K     +A +IF+ M K  +KP   TY  LL   A  
Sbjct: 182 KKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATK 241

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G L  ++ ++  M   G   + + ++ L+ A+  +
Sbjct: 242 GALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 276



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/295 (18%), Positives = 115/295 (38%), Gaps = 45/295 (15%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L    R    R ++D M   G++P    + +L+ G      L +     D M 
Sbjct: 196 YNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 255

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            NG  P+  V++ L+    K +  ++A+ +F +M++  + PN  TY  ++     +G+++
Sbjct: 256 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 315

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
                   M   G       Y  LI      NK  RA++    I+E++++    +++   
Sbjct: 316 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL---ILEMLDRGICLNTI--- 369

Query: 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
                                         F + ++  +      C E + +++ E L +
Sbjct: 370 ------------------------------FFNSIIDSH------CKEGRVIES-EKLFD 392

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           ++ +    PD+      I  Y  +G +D   K+    +     P    Y+TL+ G
Sbjct: 393 LMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLING 447



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 153/392 (39%), Gaps = 30/392 (7%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTM 87
           +E  RR   +  S YN ++  L  + R     ++   M  DG     D+  + ++I G  
Sbjct: 41  DELLRRGIPDVFS-YNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFF 99

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
           K   L  T+   ++M      P+V  YN +I+   K +  D+A+ +   M K  V P+  
Sbjct: 100 KEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCM 159

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           TY  +++   ++GQ       ++ M + G   D   Y  L+  +  K  R  + A KI +
Sbjct: 160 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD-YLCKNGRCTE-ARKIFD 217

Query: 208 LVEQSKGWSSVETSGN--------NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
            + +      + T G          A  EM G     L +L     +H      S L+  
Sbjct: 218 SMTKRGLKPEITTYGTLLQGYATKGALVEMHG-----LLDLMVRNGIHPNHYVFSILVCA 272

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
           Y       A+ + V+    +   +++   +P+       I     SG +++    FE  I
Sbjct: 273 Y-------AKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 325

Query: 320 CSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEK 379
                P   +Y +L+ G     T    + A++ ++ M  R I L+    +   ++ +  K
Sbjct: 326 DEGLSPGNIVYNSLIHGLC---TCNKWERAEELILEMLDRGICLNTIFFNS--IIDSHCK 380

Query: 380 SGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            G    +  ++DLM    + P +       +G
Sbjct: 381 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 412



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 38/208 (18%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ +V +   Q +      V+  M   G+ P    + ++I    K  R++D   + +QM 
Sbjct: 266 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 325

Query: 104 ANGFLPDVAVYNYLI---SVCGKCKNSDQAI----------------------------- 131
             G  P   VYN LI     C K + +++ I                             
Sbjct: 326 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 385

Query: 132 ---RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
              ++F+ M +  VKP+  TY  L++    AG++D    ++  M + G   D   Y+ LI
Sbjct: 386 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLI 445

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWS 216
             +  KI R  D      E+  +S G S
Sbjct: 446 NGYC-KISRMKDALVLFREM--ESSGVS 470



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 62/141 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN+++  L +  ++    ++  +M+  G+      F+S+I    K  R+ ++    D M 
Sbjct: 336 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 395

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+  Y+ LI         D+A ++   M    +KP+  TY  L+N      ++ 
Sbjct: 396 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMK 455

Query: 164 PVYAIVRDMTAAGAGLDKFCY 184
               + R+M ++G   D   Y
Sbjct: 456 DALVLFREMESSGVSPDIITY 476



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R    N   +N+++ S   + R      ++D M+  GV+P    + +LI G     
Sbjct: 358 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 417

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
           ++ +       M + G  PD   Y+ LI+  G CK S    A+ +F EM+   V P+  T
Sbjct: 418 KMDEATKLLASMVSVGMKPDCVTYSTLIN--GYCKISRMKDALVLFREMESSGVSPDIIT 475

Query: 149 YVCLLNA 155
           Y  +L  
Sbjct: 476 YNIILQG 482


>gi|399107188|gb|AFP20358.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +      N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + B+  T + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVBEAMT-LFKRMEEEEG 190



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 6   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 65

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 66  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGXAINSM 125

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 126 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 153


>gi|260780548|gb|ACX50820.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 183

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 10  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMI 69

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  ++ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 70  DEGFKPDVVTFSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 127

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 128 IDEAERLFEEMSEKGCTRDSYCYNALIDAFT-KHGKVDEAMT-LFKRMEKEEG 178


>gi|260780468|gb|ACX50780.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780484|gb|ACX50788.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  ++ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTFSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDAFT-KHGKVDEAMT-LFKRMEEEEG 188


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           +F++   GA     + +  N   YN ++ +L    +     D + +M L    P    + 
Sbjct: 157 KFYLHVFGANS---KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYS 213

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           +L+ G  K  R+ +  F  D+M+A G LP+   +N LI    K  +  +A ++ + M   
Sbjct: 214 TLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK 273

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
              PN  TY  L++     G+LD   +++  M ++    ++  Y  +I     K  RA+D
Sbjct: 274 GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLV-KQRRAED 332

Query: 201 TATKIIELVEQSK 213
               ++ + E+ +
Sbjct: 333 GVHILMSMEERGQ 345



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YNT++  L  + +      + + M+     P +  + ++I G +K  R +D     
Sbjct: 278 NEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHIL 337

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+  G   +  +Y+ LIS   K   S+ A+R+++EM +   KPN   Y   ++     
Sbjct: 338 MSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRD 397

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            + D    I+++M + G   + F Y+ L+     K
Sbjct: 398 EKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKK 432



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 68/154 (44%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N   Y+++++ L  + +      ++ +M   G +P   ++ + I G  +  +  +
Sbjct: 343 RGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDE 402

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                 +M + GFLP+   Y+ L+    K  +S +AI +++EM   +++ N      LLN
Sbjct: 403 AEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 462

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               +G+L     +   M   G   D   Y+ +I
Sbjct: 463 GLCESGRLREALTVWTHMLGEGLKPDVVAYSSMI 496



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 10/186 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSL----TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG 85
           +E   + +  NA  Y++++        SQ+       V+ +MM   ++        L+ G
Sbjct: 408 QEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL----VWKEMMSQDMRHNVVCCSVLLNG 463

Query: 86  TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK-- 143
             +  RL++       M   G  PDV  Y+ +I       + D+ +++F EM+  E K  
Sbjct: 464 LCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSR 523

Query: 144 PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           P+  TY  L NA      L     ++  M   G   D       +     +I    D   
Sbjct: 524 PDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRL 583

Query: 204 KIIELV 209
            + ELV
Sbjct: 584 FLDELV 589


>gi|260780558|gb|ACX50825.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 176

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 5/170 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 10  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMI 69

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  ++ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 70  DEGFKPDVVTFSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 127

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
           +D    +  +M+  G   D +CY  LI A T K  + D+  T    + E+
Sbjct: 128 IDEAERLFEEMSEKGCTRDSYCYNALIDAFT-KHGKVDEAMTLFKRMEEE 176


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 380 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 439

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ + M + E ++PN +T   L+ A     ++
Sbjct: 440 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 499

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +  + IV  M + G   D   +  L  A+  +I         II  +  +K   +V T G
Sbjct: 500 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYA-RIGSTCTAEDMIIPRMLHNKVKPNVRTCG 558

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
                       EE        Y  +  G    L  V++        + D+  +  ++++
Sbjct: 559 TIVNGYCEEGKMEEALRF---FYRMKELGVHPNLF-VFNSLIKGFLNINDMDGVGEVVDL 614

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +++    PDV      +  +   GD+    +++ D +     P    ++ L +G
Sbjct: 615 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 668



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 52/101 (51%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   
Sbjct: 364 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 423

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +  N DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 424 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLE 464



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++T++ + +S        ++Y DM+  G+ P    F  L  G  +    +      +QM+
Sbjct: 627 FSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 686

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAGQL 162
             G  P+V +Y  +IS         +A++++++M     + PN  TY  L+     A Q 
Sbjct: 687 KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQP 746

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                +++DM                    N +P       K ++L+  + GW S+  S 
Sbjct: 747 WKAEELLKDMEGK-----------------NVVP-----TRKTMQLI--ADGWKSIGVSN 782

Query: 223 NNAENEM-MGVSKEELYNLPTAEYVHRRGGFL 253
           +N  N +    S     N+P      R   FL
Sbjct: 783 SNDANTLGSSFSTSSKLNIPNNIASSRSPLFL 814



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 2/152 (1%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P   +F+SLI G +  + +       D M+  G  PDV  ++ L++      +  + 
Sbjct: 584 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 643

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             I+ +M +  + P+   +  L    A AG+ +    I+  M   G   +   Y  +I+ 
Sbjct: 644 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 703

Query: 191 HTN--KIPRADDTATKIIELVEQSKGWSSVET 220
             +  ++ +A     K+  +V  S   ++ ET
Sbjct: 704 WCSAGEMKKAMQVYKKMCGIVGLSPNLTTYET 735


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 124/311 (39%), Gaps = 42/311 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L  + R+   + V+++M+  G+ P    +++L+V + + +   +       M 
Sbjct: 258 YNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDML 317

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+  ++ LI V  +  + DQA+  F +MK   + P+   Y  L+N     G + 
Sbjct: 318 HRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMS 377

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               I   M   G  LD   Y  ++     K   AD  A    E+VE+            
Sbjct: 378 EALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANAL-FDEMVER------------ 424

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
                  GV   +     T  + H + G + + L+++ +                   M 
Sbjct: 425 -------GVVP-DFCTFTTLIHGHCKEGNMGKALSLFGI-------------------MT 457

Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYT 342
           +K+ K PD+      I  +  + +++  ++++ + I  + FP    YA LV G    G+ 
Sbjct: 458 QKNIK-PDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFV 516

Query: 343 PKGMQLAQDTL 353
            +  +L  + +
Sbjct: 517 SEAFRLWDEMI 527



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 163/417 (39%), Gaps = 32/417 (7%)

Query: 6   SIYRHHKSVGGALGRRFFVTSAGA-EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVY 64
           +++ ++  + G   +  +V + G   E      + + + YNT++        F   +D++
Sbjct: 254 TLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIF 313

Query: 65  DDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
            DM+  GV P    F SLI V +  G   Q   +FRD MK +G +PD  +Y  LI+  G 
Sbjct: 314 SDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRD-MKTSGLVPDNVIYTILIN--GY 370

Query: 124 CKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
           C+N    +A+ I ++M +     +   Y  +LN       L    A+  +M   G   D 
Sbjct: 371 CRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDF 430

Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-----SGNNAENEMMGVSKEE 236
             +  LI  H  +       A  +  ++ Q      + T      G     EM   +  E
Sbjct: 431 CTFTTLIHGHCKEGNMGK--ALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKAN--E 486

Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV-QAMETLLEMLKKDRKSPDVYIV 295
           L+N    E + R+  F + +   Y +  +    L  V +A     EM++K  K P +   
Sbjct: 487 LWN----EMISRK-IFPNHI--SYAILVNGYCNLGFVSEAFRLWDEMIRKGIK-PTLVTC 538

Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG-YTPKGMQLAQDTLV 354
              I+ Y  SGD+    +     I     P +  Y TL+ G + G Y  K   L      
Sbjct: 539 NTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLIN---- 594

Query: 355 NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            M ++   L P + +  +++    + G    A  I   M  R I P         NG
Sbjct: 595 KMETKG--LQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLING 649



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++D+M+  G++PT    +++I G  +   L     F  +M + G  PD   YN LI+   
Sbjct: 522 LWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFV 581

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K +  D+A  +  +M+   ++P+  TY  +LN     G++     I+R M   G   D+ 
Sbjct: 582 KGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRS 641

Query: 183 CYAGLITAHTNK 194
            Y  LI  + ++
Sbjct: 642 TYTTLINGYVSQ 653



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  R+         NTV+             +    M+ +GV P    +++LI G +KG
Sbjct: 524 DEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKG 583

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             +   FF  ++M+  G  PDV  YN +++  G C+     +A  I  +M +  + P+  
Sbjct: 584 EYMDKAFFLINKMETKGLQPDVVTYNVILN--GFCRQGRMQEAELILRKMIERGIDPDRS 641

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           TY  L+N   +   L   +    +M   G
Sbjct: 642 TYTTLINGYVSQDNLKEAFRFHDEMLQRG 670



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 81/408 (19%), Positives = 143/408 (35%), Gaps = 36/408 (8%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+ +  + +  N+++  L       L  +VY+++   G++      + ++    K  ++ 
Sbjct: 143 RKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKID 202

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           D   F   M+  G   D+  YN LI+   +     +A  +   M    +KP   TY  ++
Sbjct: 203 DVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVI 262

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQ 211
           N     G+      +  +M + G   D   Y  L+  +   N    A D  + ++     
Sbjct: 263 NGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVS 322

Query: 212 SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYV------------HRRGGFLSRLLTV 259
               S     G ++ N  +  +     ++ T+  V            + R G +S  L +
Sbjct: 323 PDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEI 382

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDR----------------KSPDVYIVMQNIRCYL 303
                     L DV A  T+L  L K +                  PD       I  + 
Sbjct: 383 RDKMLEQGCAL-DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHC 441

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFL 363
             G++     +F         P    Y  L++G  F  T + M+ A +    M SR IF 
Sbjct: 442 KEGNMGKALSLFGIMTQKNIKPDIVTYNILIDG--FCKTTE-MEKANELWNEMISRKIF- 497

Query: 364 SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
            P   S  +LV      G  + A  +WD M  + I P+L        G
Sbjct: 498 -PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKG 544



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++     Q R      +   M+  G+ P R  + +LI G +    L++ F F D+M 
Sbjct: 608 YNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEML 667

Query: 104 ANGFLPD 110
             GF+PD
Sbjct: 668 QRGFVPD 674


>gi|298707694|emb|CBJ26011.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1173

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 138/346 (39%), Gaps = 48/346 (13%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT + +L   +++ L   V+ +M  DGV P RD +  ++    K    +       +MK
Sbjct: 169 YNTALRALDRCKKWRLALSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMK 228

Query: 104 A----------------------------NGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
           A                                PD+ +Y  ++  C   K   QAIR+ +
Sbjct: 229 ARRRQQQQQQQQQRAGGGPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLD 288

Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYAGLITAHTNK 194
           +M    V PN       L+ACA  GQ+     ++++M    G   +   Y  +I+ H   
Sbjct: 289 DMSAAGVAPNVVVVNTALSACAKCGQVSRATQLLQEMQEKYGVAPEVRSYNSVISGHE-- 346

Query: 195 IPRADD--TATKIIELVEQSKGWSSVETSGNN--AENEMMGVSKEELYNLPTAEYVHRRG 250
             RA +   A  + + +EQ+ G      + N+     +  G  +E L  L     + RR 
Sbjct: 347 --RAGEWREALALAKRMEQADGVLPNVVTFNSVIGACKTAGRPEEALAVL----GMLRRK 400

Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
           G    +++ ++ A  ACA     +    LLE++  +  +PD+      +   +  G  + 
Sbjct: 401 GLQPDVIS-FNSAIGACASGGKWEVALQLLELMPSEGVTPDLMTYNIALDACVKGGQWEM 459

Query: 311 GHKVFEDYICS--EKFPPAELYATLVEGAMF---GYTPKGMQLAQD 351
              +F++ + S  E   P +LY       +F   G  P+ ++L ++
Sbjct: 460 AMSLFDELVASGDESLRP-DLYTYNTLMTVFSDAGMLPRALELLEE 504



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 12/149 (8%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           DGV P    F+S+I       R ++       ++  G  PDV  +N  I  C      + 
Sbjct: 365 DGVLPNVVTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASGGKWEV 424

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG---AGLDKFCYAG 186
           A+++ E M    V P+  TY   L+AC   GQ +   ++  ++ A+G      D + Y  
Sbjct: 425 ALQLLELMPSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRPDLYTYNT 484

Query: 187 LITAHTNK--IPRADDTATKIIELVEQSK 213
           L+T  ++   +PRA       +EL+E++K
Sbjct: 485 LMTVFSDAGMLPRA-------LELLEEAK 506



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 5/159 (3%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           R+    +   +N+ + +  S  ++ +   + + M  +GV P    ++  +   +KG + +
Sbjct: 399 RKGLQPDVISFNSAIGACASGGKWEVALQLLELMPSEGVTPDLMTYNIALDACVKGGQWE 458

Query: 94  DTFFFRDQMKANG---FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
                 D++ A+G     PD+  YN L++V        +A+ + EE K   ++P+  TY 
Sbjct: 459 MAMSLFDELVASGDESLRPDLYTYNTLMTVFSDAGMLPRALELLEEAKAKRLRPDVVTYS 518

Query: 151 CLLNAC--AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187
            L+ AC  +   Q D    +V DM A G   +   Y G+
Sbjct: 519 TLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGV 557



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           +R+     G LP +A+YN  +    +CK    A+ +F EM+   V P+  +Y  +++AC+
Sbjct: 153 YREAKVLKGELPRIALYNTALRALDRCKKWRLALSVFREMQSDGVDPDRDSYFFVMSACS 212

Query: 158 AAGQLDPVYAIVRDMTA 174
             G+     A++ +M A
Sbjct: 213 KRGEAKTALALLAEMKA 229


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 135/333 (40%), Gaps = 37/333 (11%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ +V +    RR   + D+  +M   G  P    ++ L+    K   +++      QM+
Sbjct: 285 YSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           A G  P+   Y+ L+++ G+    D   ++F EMK     P+  TY  L+      G   
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE------LVEQSKGWSS 217
            V  +  DM       D   Y G+I A        D  A KI++      +V  SK ++ 
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHED--ARKILQYMTANDIVPSSKAYTG 462

Query: 218 V-ETSGNNAENEMMGVSKEELYNL---PTAEYVHR------RGGF-------LSRLLTV- 259
           V E  G  A  E   V+   ++ +   P+ E  H       RGG        LSRL+   
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSG 522

Query: 260 ---YHVAFHACAEL-----KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
                  F+A  E      K  +A++T ++M +K R  PD   +   +  Y  +  +D  
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDM-EKSRCDPDERTLEAVLSVYSFARLVDEC 581

Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
            + FE+   S+  P    Y  ++  A++G T +
Sbjct: 582 REQFEEMKASDILPSIMCYCMML--AVYGKTER 612



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 145/357 (40%), Gaps = 61/357 (17%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +V+D+M   GV  +   + +LI    +  R + +    D+MK +   P +  YN +I+ C
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINAC 221

Query: 122 GKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            +   + +  + +F EM+   ++P+  TY  LL+ACA  G  D    + R M   G   D
Sbjct: 222 ARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD 281

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
              Y+ L+           +T  K+  L + S   S + + G                +L
Sbjct: 282 LTTYSHLV-----------ETFGKLRRLEKVSDLLSEMASGG----------------SL 314

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQN 298
           P               +T Y+V   A A+   ++    +   ++    +P  + Y V+ N
Sbjct: 315 PD--------------ITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360

Query: 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF---GYTPKGMQLAQDTLVN 355
           +  +  SG  D+  ++F +   S   P A  Y  L+E  +F   GY  + + L  D    
Sbjct: 361 L--FGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE--VFGEGGYFKEVVTLFHD---- 412

Query: 356 MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPA----VEAY 408
           M   NI   P M +   ++ A  K G +  A  I   M A  I PS  A    +EA+
Sbjct: 413 MVEENI--EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF 467



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 120/311 (38%), Gaps = 40/311 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS-RLQDTFFFRDQM 102
           Y  ++ +     R+    ++ D M  D + P+   ++++I    +G    +       +M
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEM 238

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           +  G  PD+  YN L+S C      D+A  +F  M    + P+  TY  L+       +L
Sbjct: 239 RHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRL 298

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK------------------IPRADDTATK 204
           + V  ++ +M + G+  D   Y  L+ A+                      P A +T + 
Sbjct: 299 EKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA-NTYSV 357

Query: 205 IIELVEQSKGWSSV-----ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
           ++ L  QS  +  V     E   +N + +         YN+     V   GG+   ++T+
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAA------TYNILIE--VFGEGGYFKEVVTL 409

Query: 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319
           +H       E  D++  E ++    K     D   ++Q    Y+ + DI    K +   I
Sbjct: 410 FHDMVEENIE-PDMETYEGIIFACGKGGLHEDARKILQ----YMTANDIVPSSKAYTGVI 464

Query: 320 CSEKFPPAELY 330
             E F  A LY
Sbjct: 465 --EAFGQAALY 473



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 18/181 (9%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E    N   +A+ YN ++        F  +  ++ DM+ + ++P  + +  +I    KG 
Sbjct: 377 EMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGG 436

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             +D       M AN  +P    Y  +I   G+    ++A+  F  M +    P+ +TY 
Sbjct: 437 LHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYH 496

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            LL + A  G +    AI+  +  +G                  IPR  DT    IE  +
Sbjct: 497 SLLYSFARGGLVKESEAILSRLVDSG------------------IPRNRDTFNAQIEAYK 538

Query: 211 Q 211
           Q
Sbjct: 539 Q 539


>gi|295830909|gb|ADG39123.1| AT5G21222-like protein [Capsella grandiflora]
 gi|295830919|gb|ADG39128.1| AT5G21222-like protein [Capsella grandiflora]
          Length = 166

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 13  YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 72

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ E M + E ++PN +T   L+ A     ++
Sbjct: 73  ESGCKPTTSTFNTLIKGYGKJGKLEESSRLLELMLRDEMLQPNDRTCNILVQAWCNQRKI 132

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +  + IV  M + G   D   +  L  A+
Sbjct: 133 EEAWNIVYKMQSYGVKPDVVTFNTLAXAY 161



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   +  N
Sbjct: 1   LIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 61  LDQAMKIFEKMKESGCKPTTSTFNTLIKGYGKJGKLE 97


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN +V    +  + +    + D M   GV+P    ++ LI G      +   F   
Sbjct: 334 NVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLL 393

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+ NG   D   YN LI    K    D+A  +F+ ++   ++PN  T+  ++N    A
Sbjct: 394 RLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKA 453

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+ D     + +M +AG   D + Y+  I
Sbjct: 454 GKFDVACTFLENMISAGYAPDTYTYSPFI 482



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 63/159 (39%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    N+  +NTV+  L    +F +     ++M+  G  P    +   I    K    Q+
Sbjct: 434 RGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQE 493

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
             FF D+M      P    Y  +I+     +N   A RI+ +M      P+  TY   + 
Sbjct: 494 GLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVR 553

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           A    G+LD    +V +M      +D   Y  LI  HT+
Sbjct: 554 AYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTS 592



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 1/165 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +L    +      ++D +   G++P    F+++I G  K  +      F + M 
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMI 467

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G+ PD   Y+  I    K K S + +   +EM + +VKP+   Y  ++N         
Sbjct: 468 SAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYG 527

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
               I   M + G   D   Y   + A+ N+  R D+    + E+
Sbjct: 528 LATRIWGQMVSQGCSPDVVTYTTSVRAYCNE-GRLDEAENVVTEM 571



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 114/318 (35%), Gaps = 59/318 (18%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           + ++M   G+ P       ++    +  R+       + M+  G  P+V  YN ++    
Sbjct: 287 ILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFC 346

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
                 +A+ + ++M++  V+P+  TY  L+      G +   + ++R M   G   D++
Sbjct: 347 NAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQY 406

Query: 183 CYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE---- 236
            Y  LI A   T K+    D A  + + +E  +G      + N   N +    K +    
Sbjct: 407 TYNVLIDALCKTGKV----DEACSLFDGLEY-RGIRPNSVTFNTVINGLCKAGKFDVACT 461

Query: 237 -LYNLPTAEY---VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK---- 288
            L N+ +A Y    +    F+  L          C      + +  + EML+KD K    
Sbjct: 462 FLENMISAGYAPDTYTYSPFIENL----------CKTKGSQEGLFFIDEMLQKDVKPSTV 511

Query: 289 ------------------------------SPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
                                         SPDV     ++R Y + G +D    V  + 
Sbjct: 512 NYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEM 571

Query: 319 ICSEKFPPAELYATLVEG 336
                   A  Y TL++G
Sbjct: 572 KKCRTIVDAMAYNTLIDG 589



 Score = 41.2 bits (95), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 4/160 (2%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A  Y     A   + YN ++ +L  +      +     M+  G +P    F+SLI+G  +
Sbjct: 117 AHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCR 176

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
             +L+       +M   GF  D   Y  LI    +    D+A+ +F EM     +P+  T
Sbjct: 177 TQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM----TQPDMYT 232

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +  L+     AG+ +    +++ M   G       YA L+
Sbjct: 233 HAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALV 272



 Score = 38.5 bits (88), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 52/118 (44%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G +PT   + +L+    +  + ++     ++M  +G +P V     +++   +      A
Sbjct: 260 GWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGA 319

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +R+FE M+    +PN  TY  ++     AG++    A++  M   G   D   Y  LI
Sbjct: 320 VRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLI 377



 Score = 38.5 bits (88), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/140 (18%), Positives = 60/140 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   + +  ++A  Y +++   + +RR   +  +   M  + +    D++++L+    K 
Sbjct: 655 ELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKL 714

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
               D +     M  +GFLP++  Y YL+S       +D+A  IF   +  E   +   +
Sbjct: 715 RMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVW 774

Query: 150 VCLLNACAAAGQLDPVYAIV 169
             +++     G  D  + ++
Sbjct: 775 KVIIDGFIRKGHADMCHDMI 794


>gi|295830913|gb|ADG39125.1| AT5G21222-like protein [Capsella grandiflora]
          Length = 166

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 13  YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 72

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ E M + E ++PN +T   L+ A     ++
Sbjct: 73  ESGCKPTTSTFNTLIKGYGKJGKLEESSRLLELMLRDEMLQPNDRTCNILVQAWCNQRKI 132

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +  + IV  M + G   D   +  L  A+
Sbjct: 133 EEAWNIVYKMQSYGVKPDVVTFNTLAKAY 161



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   +  N
Sbjct: 1   LIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 61  LDQAMKIFEKMKESGCKPTTSTFNTLIKGYGKJGKLE 97


>gi|302757523|ref|XP_002962185.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
 gi|300170844|gb|EFJ37445.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
          Length = 442

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT-FFF 98
           N   YN+++       R     +VYD M+   V P+   ++ L++G  K  +  D     
Sbjct: 250 NCHIYNSLMDGFLGVNRAREAINVYDTMLRKMVMPSIVTYNILMLGLCKLGQTADARLVL 309

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R+  + +G +P +  Y  LI   GK   +D+AI +F EM    V P+  +   L+ A A 
Sbjct: 310 REMRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAM 369

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           A ++D    ++RDM   G   D   Y  L+
Sbjct: 370 ADRMDEATQLLRDMPRMGITPDALAYNALV 399



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 9/184 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E    R    +   +  V+T L    +     +V+ +M   G +P   ++ SL+ G  K 
Sbjct: 33  ERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKA 92

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
           S + +      ++ + G  P    Y   IS  G CKN   ++A ++  EM K       +
Sbjct: 93  SMMDEARKLLQEIVSRGMKPTEVTYTSFIS--GLCKNGRVEEAGKLVREMGKM---CAAE 147

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
              C+       G+++   A+  +M   G  LD  CY  LI  H     R +D A ++ E
Sbjct: 148 VLHCIFGGYVLEGKIEEALALKDEMVKKGVTLDVRCYTNLI--HGLFYVRRNDEAQEMFE 205

Query: 208 LVEQ 211
            + Q
Sbjct: 206 AMVQ 209



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 57/143 (39%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ +L    R       ++ M+     P    F  +I G  K  +L        +M 
Sbjct: 12  YTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMN 71

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G+ PD+ VY  L+    K    D+A ++ +E+    +KP   TY   ++     G+++
Sbjct: 72  RKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVE 131

Query: 164 PVYAIVRDMTAAGAGLDKFCYAG 186
               +VR+M    A     C  G
Sbjct: 132 EAGKLVREMGKMCAAEVLHCIFG 154



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 70  DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
           DG+ PT   + +LI G  K  R  +      +M  NG +PD      LI         D+
Sbjct: 316 DGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDE 375

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A ++  +M +  + P+   Y  L+       ++ P + ++ +M      +D  C     T
Sbjct: 376 ATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPAWDVLVEM------MDNSCVPDGST 429

Query: 190 AHTNKIPRADDTA 202
               K+    DTA
Sbjct: 430 FRAMKLGFKADTA 442



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R        Y + ++ L    R      +  +M   G     ++ H +  G +  
Sbjct: 103 QEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREM---GKMCAAEVLHCIFGGYVLE 159

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            ++++    +D+M   G   DV  Y  LI      + +D+A  +FE M +    P+ +TY
Sbjct: 160 GKIEEALALKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTY 219

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             +++     G++     +V  M AAG
Sbjct: 220 GMIVSHFCKQGKMQAACKVVEIMDAAG 246



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 87/240 (36%), Gaps = 41/240 (17%)

Query: 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170
           V  Y  +I+   K    DQAI  FE M   +  P+ +T+  ++     AG+L+    + +
Sbjct: 9   VVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQ 68

Query: 171 DMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS--------G 222
           +M   G   D   Y  L+    +K    D+    + E+V  S+G    E +         
Sbjct: 69  EMNRKGWKPDIIVYTSLVDG-LSKASMMDEARKLLQEIV--SRGMKPTEVTYTSFISGLC 125

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRR-GGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N   E  G    E+  +  AE +H   GG+      V          LKD        E
Sbjct: 126 KNGRVEEAGKLVREMGKMCAAEVLHCIFGGY------VLEGKIEEALALKD--------E 171

Query: 282 MLKKDRKSPDVYIVMQNIRCY-------LHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
           M+KK         V  ++RCY        +    D   ++FE  +     P    Y  +V
Sbjct: 172 MVKKG--------VTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMIV 223



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD-TFFFRDQM 102
           Y T++  L    R     DV+ +M+ +GV P      SLI       R+ + T   RD M
Sbjct: 325 YRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRD-M 383

Query: 103 KANGFLPDVAVYNYLISV-CGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              G  PD   YN L+ V CG  K    A  +  EM      P+G T+
Sbjct: 384 PRMGITPDALAYNALVKVLCGGAKVG-PAWDVLVEMMDNSCVPDGSTF 430


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 158/406 (38%), Gaps = 36/406 (8%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           ++  RR Y  +   Y+ V+  L         +++   +   GV+     +  +I G  K 
Sbjct: 62  QQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKA 121

Query: 90  SRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
           SR+ D    F+      G +PDV  +N L+      +   +A  +FE M K   +PN  +
Sbjct: 122 SRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVIS 181

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKII 206
           Y  LL+    AG+LD    +  +M       D   Y   +T     N++  A D   K++
Sbjct: 182 YSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241

Query: 207 ELVEQSK--GWSSV------ETSGNNAENEMM------GVSKEELYNLPTAEYVHRRGGF 252
               ++    +S+V      +     A+N+M+      G+  E        E + R    
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFE--EMISRNHPP 299

Query: 253 LSRLLTVYHVAFHACAELKDVQAMETLLEMLK--KDRKSP---DVYIVMQNIRCYLHSGD 307
            + L   ++   HA  + K +     L + +K  K+   P   + Y +M +  C   +  
Sbjct: 300 SAEL---FNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLC--KAKQ 354

Query: 308 IDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPR 366
           +D   ++  +       P    Y+ LV+G    G   +    A D L  M+   +F  P 
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDR----ACDLLEEMSKEGVF--PD 408

Query: 367 MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
             +D  ++ A  K+G    A    + M+AR  TP L       +GL
Sbjct: 409 SFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGL 454



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 45/296 (15%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL---PDVAVYNYLISV 120
           +++M+     P+ +LF++LI    K  RL D      +MK+       P++  YN ++  
Sbjct: 289 FEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDN 348

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
             K K  D+A  +  EM  Y + P+  TY  L++     G+LD    ++ +M+  G   D
Sbjct: 349 LCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPD 408

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
            F  A ++ A  +K  + D                                      Y L
Sbjct: 409 SFTDASILNA-LSKAGKVD--------------------------------------YAL 429

Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
              E +  RG   +  L  Y+       +   +    T L  +   + +PDV+     I 
Sbjct: 430 SHLETMKARGS--TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIIT 487

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGYTPKGMQLAQDTLVN 355
               SG     H +F++ +     P   LY +L++G A  G     ++L + +L  
Sbjct: 488 ALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCK 543



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 4/183 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           EE   RN+  +A  +NT++ ++   +R     LL      M      P  + ++ ++   
Sbjct: 290 EEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNL 349

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
            K  +L +     ++M   G  PDV  Y+ L+    K    D+A  + EEM K  V P+ 
Sbjct: 350 CKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDS 409

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
            T   +LNA + AG++D   + +  M A G+  D   Y  L+     K  R D+  T + 
Sbjct: 410 FTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLC-KAGRIDEAITFLA 468

Query: 207 ELV 209
           ++V
Sbjct: 469 KMV 471



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN +V +L   ++    +++ ++M   G+ P    + +L+ G  K  +L       
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLL 397

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M   G  PD      +++   K    D A+   E MK     P+  TY  LL+    A
Sbjct: 398 EEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKA 457

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           G++D     +  M AA    D F Y  +ITA
Sbjct: 458 GRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E A    + +   Y+ +V  L    +     D+ ++M  +GV P      S++    K  
Sbjct: 364 EMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAG 423

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           ++       + MKA G  PD+  YN L+    K    D+AI    +M   +  P+  +Y 
Sbjct: 424 KVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYT 483

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            ++ A   +GQ    +AI ++M   G   D   Y  L+
Sbjct: 484 IIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 140/382 (36%), Gaps = 31/382 (8%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           ++ Y ++   YN  + +L       L  + +  M   G  P    +  ++ G  K   L 
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK-YEVKPNGQTYVCL 152
                  Q++ +G   +V  Y+ +I  C K    D A+ IF+ M       P+  T+  L
Sbjct: 91  KAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSL 150

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           L    +  ++   + +   M  AG   +   Y+ L+     K  R D+      E+VE+S
Sbjct: 151 LKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLC-KAGRLDEACRLWEEMVEKS 209

Query: 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
                V  +               +  L  A  V        +++T    A        D
Sbjct: 210 CVPDLVAYTSF-------------VTGLCKANRVAEACDCCRKMVTKGSKA--------D 248

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
             A  T++ +L K   + +    M    C   SG +D   K FE+ I     P AEL+ T
Sbjct: 249 AVAFSTVIGILCKKGHAEEAQNQMIEHLC--RSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 333 LVEGAMFGY-TPKGMQLAQDTLVNMNS-RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
           L+         P G+ L Q     M S +  +  P + +  ++V    K+     A  + 
Sbjct: 307 LIHAVCKSKRLPDGVLLFQ----RMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 391 DLMQARKITPSLPAVEAYYNGL 412
           + M    ++P +    A  +GL
Sbjct: 363 NEMANYGLSPDVVTYSALVDGL 384



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 65  DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
           + M   G  P    +++L+ G  K  R+ +   F  +M A    PDV  Y  +I+   + 
Sbjct: 433 ETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRS 492

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR------DMTAAGAG 178
             +  A  IF+EM K  V P+   Y  LL+  A  G  D    +++      D       
Sbjct: 493 GQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMV 552

Query: 179 LDKFCYAG 186
           LD  C AG
Sbjct: 553 LDGLCKAG 560


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 129/307 (42%), Gaps = 7/307 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 416

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ + M + E ++PN +T   L+ A     ++
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 476

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +  + IV  M + G   D   +  L  A+  +I         II  +  +K   +V T G
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYA-RIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
                       EE        Y  +  G    L  V++        + D+  +  ++++
Sbjct: 536 TIVNGYCEEGKMEEALRF---FYRMKELGVHPNLF-VFNSLIKGFLNINDMDGVGEVVDL 591

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-AMFGY 341
           +++    PDV      +  +   GD+    +++ D +     P    ++ L +G A  G 
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGE 651

Query: 342 TPKGMQL 348
             K  Q+
Sbjct: 652 PEKAKQI 658



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 52/101 (51%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +  N DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLE 441



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++T++ + +S        ++Y DM+  G+ P    F  L  G  +    +      +QM+
Sbjct: 604 FSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMR 663

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAGQL 162
             G  P+V +Y  +IS         +A++++++M     + PN  TY  L+     A Q 
Sbjct: 664 KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQP 723

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                +++DM                    N +P       K ++L+  + GW S+  S 
Sbjct: 724 WKAEELLKDMEGK-----------------NVVP-----TRKTMQLI--ADGWKSIGVSN 759

Query: 223 NNAENEM-MGVSKEELYNLPTAEYVHRRGGFL 253
           +N  N +    S     N+P      R   FL
Sbjct: 760 SNDANTLGSSFSTSSKLNIPNNIASSRSPLFL 791



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 2/152 (1%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P   +F+SLI G +  + +       D M+  G  PDV  ++ L++      +  + 
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             I+ +M +  + P+   +  L    A AG+ +    I+  M   G   +   Y  +I+ 
Sbjct: 621 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISG 680

Query: 191 HTN--KIPRADDTATKIIELVEQSKGWSSVET 220
             +  ++ +A     K+  +V  S   ++ ET
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPNLTTYET 712


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 4/152 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TVV+ L   RRF     ++++M+  G++P      +LI G  K  ++ + F    +M 
Sbjct: 303 YTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRML 362

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 +V++YN LIS   +  + ++A +    M++   +P+  TY  LLN   + G  D
Sbjct: 363 TLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTD 422

Query: 164 PVYAIVRDMTAAGAGLDKFCY----AGLITAH 191
               ++R M  +G   D++ Y     GL  AH
Sbjct: 423 KAENLIRKMEMSGVNPDRYSYNILLKGLCKAH 454



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           RRF       EE  RR    +      ++  L   ++     ++   M+   +Q    ++
Sbjct: 314 RRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIY 373

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           ++LI G  +   ++  +     M+ NG  PDV  YN L++       +D+A  +  +M+ 
Sbjct: 374 NALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEM 433

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAGLITA 190
             V P+  +Y  LL     A QLD  +A V D    G           +D FC A  + +
Sbjct: 434 SGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNS 493

Query: 191 HTN 193
             N
Sbjct: 494 ALN 496



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           M + GV P R  ++ L+ G  K  +L   F F  D M+  GF  D+   N LI    + K
Sbjct: 431 MEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFC-DIVSCNILIDAFCRAK 489

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             + A+ +F+EM    ++ +  TY  L+N     G
Sbjct: 490 KVNSALNLFKEMGYKGIQADAVTYGILINGLFGIG 524



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 64/152 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    +A  Y  ++  L       L  +++D M+   + P  ++++ ++    K 
Sbjct: 499 KEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKV 558

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +       QM      PD   +N LI   GK   + +A+ +F+EM+   V+P+  T+
Sbjct: 559 GHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTF 618

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
             +++     G+    Y I   M   G  LD+
Sbjct: 619 RYIISGLLDEGKATLAYEIWEYMMENGIILDR 650



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N  V  L    R +    + + M + G  P    + +++       R  +     ++M  
Sbjct: 269 NIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVR 328

Query: 105 NGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            G  PDV     LI   G CKN   D+A  +   M   +++ N   Y  L++    AG +
Sbjct: 329 RGLKPDVVACGALIF--GLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSI 386

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           +  Y  V  M   G   D   Y  L+  H   I   D  A  +I  +E S
Sbjct: 387 EKAYKTVSFMQRNGCEPDVVTYNILLN-HYCSIGMTDK-AENLIRKMEMS 434


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N ++ S    RR      V   ++  G QP    F++LI G     ++ +     D+   
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
            GF PDV  Y  L++   K  N+  AIR+   M +   +PN   Y  ++++     Q+  
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            + +  +M   G   D F Y  LI A  N
Sbjct: 309 AFNLFSEMITKGISPDIFTYNSLIHALCN 337



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   ++TVV +L  +    +  DV D M+  GV+P    + +L+ G    S + +     
Sbjct: 359 NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVF 418

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M   G +P+V  YN LI+   + +  D+A+ + E+M    +  +  TY  L++     
Sbjct: 419 DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV 478

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L    A+  +M A+G   D   Y  L+
Sbjct: 479 GRLQHAIALFHEMVASGQIPDLVTYRILL 507



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 41/205 (20%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--------- 83
            ++N   N   YNT++ SL   R+     +++ +M+  G+ P    ++SLI         
Sbjct: 282 VQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEW 341

Query: 84  ------VGTMKGSRLQ-DTFFFR-------------------DQMKANGFLPDVAVYNYL 117
                 +  M  S++  +   F                    D M   G  PDV  Y  L
Sbjct: 342 KHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTAL 401

Query: 118 ISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
           +   G C  S  D+A+++F+ M      PN ++Y  L+N      ++D    ++  M+  
Sbjct: 402 MD--GHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ 459

Query: 176 GAGLDKFCYAGLI--TAHTNKIPRA 198
           G   D   Y  LI    H  ++  A
Sbjct: 460 GLIADTVTYNTLIHGLCHVGRLQHA 484



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCK 125
           M+    +P    ++++I    K  ++ + F    +M   G  PD+  YN LI ++C  C+
Sbjct: 281 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCE 340

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
                  +  EM   ++ PN   +  +++A    G +   + +V  M   G   D   Y 
Sbjct: 341 -WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYT 399

Query: 186 GLITAH 191
            L+  H
Sbjct: 400 ALMDGH 405



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 9/137 (6%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D M+  G  P    ++ LI G  +  R+       +QM   G + D   YN LI    
Sbjct: 417 VFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLC 476

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR---------DMT 173
                  AI +F EM      P+  TY  LL+       L     +++         D+ 
Sbjct: 477 HVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADIL 536

Query: 174 AAGAGLDKFCYAGLITA 190
                +D  C AG + A
Sbjct: 537 VYNIAIDGMCRAGELEA 553



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 4/161 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+ + +    +   YNT++  L    R      ++ +M+  G  P    +  L+    K 
Sbjct: 454 EQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKN 513

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIR-IFEEMKKYEVKPNGQ 147
             L +       ++ +    D+ VYN  I++ G C+  + +A R +F  +    ++P+ +
Sbjct: 514 HHLAEAMVLLKAIEGSNLDADILVYN--IAIDGMCRAGELEAARDLFSNLSSKGLQPDVR 571

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           TY  +++     G LD    + R M   G   D   Y  +I
Sbjct: 572 TYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTII 612



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           + +NT++  L  + +      ++D  + +G QP    + +L+ G  K             
Sbjct: 221 TTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRS 280

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M      P+V  YN +I    K +   +A  +F EM    + P+  TY  L++A     +
Sbjct: 281 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCE 340

Query: 162 LDPVYAIVRDMTAA---------GAGLDKFCYAGLI 188
              V  ++ +M  +            +D  C  G+I
Sbjct: 341 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMI 376



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 63/149 (42%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN ++      +R      + + M L G+      +++LI G     RLQ      
Sbjct: 429 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 488

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
            +M A+G +PD+  Y  L+    K  +  +A+ + + ++   +  +   Y   ++    A
Sbjct: 489 HEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA 548

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           G+L+    +  ++++ G   D   Y  +I
Sbjct: 549 GELEAARDLFSNLSSKGLQPDVRTYNIMI 577


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 24  VTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
           V +AG   E  A+     +   YN+++       R      VYD M+  G++P    F+ 
Sbjct: 624 VEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNV 683

Query: 82  LIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           L+ G  K  +    F  F++ ++ +   P +  Y  LI   GK     +A   F+EM   
Sbjct: 684 LMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDR 743

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            + P   TY  L+ + A AG++     +V DM   G   D   Y+ LIT 
Sbjct: 744 GIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 793



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
            +  A +A  Y T++ + +         ++ + M   GV P    ++SL+ G +K  R+ 
Sbjct: 601 EKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVD 660

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCL 152
             F   D+M A+G  P+   +N L+    K   +D+A  +F+EM +K EV P   +Y  L
Sbjct: 661 QAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTIL 720

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIEL 208
           ++    AG++   ++  ++M   G   +   Y  LI   A   +IP A      +++L
Sbjct: 721 IDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKL 778



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 17/298 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNTV++ L S  +       ++ M+ +G +P    F +LI G  K  + Q      +Q  
Sbjct: 58  YNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQ-A 116

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
              F PDV +Y  +I    K  + D   +I EEM      P+   Y  L++     G++D
Sbjct: 117 LKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVD 176

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS-KGWSSVETSG 222
             Y +   M  +G   D   +  LI A +N   + D+      E++E+  + +  V+ S 
Sbjct: 177 EAYELFERMRKSGCLGDYVTFMTLIEALSNH-GKLDEACELYREMIERGYEPYLEVQDSL 235

Query: 223 NNAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
             A  +   V +  E+Y    A+ V       + L+  Y      C   +    ++ LL+
Sbjct: 236 IFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGY------CKLGRVDDGLKLLLQ 289

Query: 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE---DYICSEKFPPAELYATLVEG 336
           M++ D   PD+      +  +  +  +D+  ++F+    Y C    P A  Y T+++G
Sbjct: 290 MVECDN-FPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCK---PNAATYTTIIQG 343



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 119/325 (36%), Gaps = 64/325 (19%)

Query: 73  QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
           +P   L+ S+I G  K   L   F   ++M A G +PD A Y  LI    K    D+A  
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG---------AGLDKFC 183
           +FE M+K     +  T++ L+ A +  G+LD    + R+M   G         + +   C
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240

Query: 184 YAGLITAHTN-------------------------KIPRADDTATKIIELVEQSKGWSSV 218
            AG +                              K+ R DD    ++++VE    +  +
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVE-CDNFPDI 299

Query: 219 ET-----SGNNAENEMMGVSKEELYNLPT--------------------AEYVHRRGGFL 253
           +T     +G +  N +      EL+ L +                    A+ +     F 
Sbjct: 300 QTYNILVAGFSRANRL--DDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFF 357

Query: 254 SRLLTV--YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
              L V  Y       A+ K +     L E LK    SP+V      I   L +G I++G
Sbjct: 358 DEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDG 417

Query: 312 HKVFEDYICSEKFPPAELYATLVEG 336
            K FED   S   P    Y  +++G
Sbjct: 418 LKNFEDMSGSSCVPTRTTYTVVIDG 442



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 142/370 (38%), Gaps = 28/370 (7%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  V+  L    R       ++DM      PTR  +  +I G  K   L D     
Sbjct: 397 NVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVF 456

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           +QM   G +PD   Y  LI    K    D+A ++ + M     +P   TY  +++     
Sbjct: 457 EQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL 516

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
             ++    ++  M   G     F +  L++ + +K  RA++    + E+           
Sbjct: 517 DMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSK-GRAEEAYQVLTEM----------- 564

Query: 220 TSGNNAENEMMGVSKEELY----NLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKD 272
           T+   A + ++  S  +L      +P A +V       G     LT Y       +++ +
Sbjct: 565 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALT-YGTIIQNFSKIGN 623

Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
           V+A   +LE++ K    PD +     +  Y+    +D    V++  + S   P A  +  
Sbjct: 624 VEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNV 683

Query: 333 LVEGAMF--GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
           L+ G +F  G T +   L ++ L         + P + S  +L+    K+G  + A   +
Sbjct: 684 LMHG-LFKDGKTDRAFSLFKEMLEKDE-----VPPTLVSYTILIDGLGKAGRVSEAFSQF 737

Query: 391 DLMQARKITP 400
             M  R I P
Sbjct: 738 QEMIDRGIIP 747



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 129/303 (42%), Gaps = 29/303 (9%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N V+  L   R+     +++ +M   G +PT   ++++I G     ++ + + F + M  
Sbjct: 24  NIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMID 83

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAI---RIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           NG  PDV  +  LI   G CK     +    + + +K++  +P+   Y  +++    AG 
Sbjct: 84  NGCEPDVIAFTTLIH--GFCKAGQPQVGHMLLNQALKRF--RPDVFLYTSVIHGYCKAGD 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS---- 217
           LD  + I+ +M AAG   D   Y  LI     K+ R D+ A ++ E + +S         
Sbjct: 140 LDTGFKILEEMLAAGCIPDAAAYFVLIDPLC-KLGRVDE-AYELFERMRKSGCLGDYVTF 197

Query: 218 ---VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
              +E   N+ + +       ELY     E + R  G+   L     + F  C   K  +
Sbjct: 198 MTLIEALSNHGKLD----EACELYR----EMIER--GYEPYLEVQDSLIFALCKAGKVDE 247

Query: 275 AMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
           A E    ++ K   +  V Y  + +  C L  G +D+G K+    +  + FP  + Y  L
Sbjct: 248 ANEIYQTVVAKKVATSRVAYNSLMDGYCKL--GRVDDGLKLLLQMVECDNFPDIQTYNIL 305

Query: 334 VEG 336
           V G
Sbjct: 306 VAG 308



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 126/327 (38%), Gaps = 10/327 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  ++    +   Y T++   +   +    R + D M+  G +PT   + S++ G  K 
Sbjct: 457 EQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL 516

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + +      QM+  G  P + ++  L+S       +++A ++  EM      P+   Y
Sbjct: 517 DMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILY 576

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             L++   + G++     +   M   G   D   Y G I  + +KI    + A +I+EL+
Sbjct: 577 TSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY-GTIIQNFSKIGNV-EAAGEILELM 634

Query: 210 EQSKGWSSVETSGNNAENEMM-GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC- 267
            +S            A N +M G  K E  +     Y       +      ++V  H   
Sbjct: 635 AKSGVGPDC-----FAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLF 689

Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
            + K  +A     EML+KD   P +      I     +G +      F++ I     P  
Sbjct: 690 KDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPEC 749

Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTL 353
             Y +L+   A  G  P+  +L +D +
Sbjct: 750 HTYTSLIYSLAKAGRIPEAKKLVEDMV 776



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 40  NASEYNTVVTSL----TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NA  +N ++  L     + R F L +++ +    D V PT   +  LI G  K  R+ + 
Sbjct: 677 NAVTFNVLMHGLFKDGKTDRAFSLFKEMLEK---DEVPPTLVSYTILIDGLGKAGRVSEA 733

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           F    +M   G +P+   Y  LI    K     +A ++ E+M K  V P+ Q Y  L+  
Sbjct: 734 FSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 793

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              +  +D  + + ++M   G   ++  Y
Sbjct: 794 LIDSSMVDTAWDVFQEMMKRGCAPNEVTY 822



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 54/125 (43%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R Y       ++++ +L    +     ++Y  ++   V  +R  ++SL+ G  K  
Sbjct: 219 EMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLG 278

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           R+ D      QM      PD+  YN L++   +    D A+ +F+ +  Y  KPN  TY 
Sbjct: 279 RVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYT 338

Query: 151 CLLNA 155
            ++  
Sbjct: 339 TIIQG 343



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 48/118 (40%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++  L    R       + +M+  G+ P    + SLI    K  R+ +     + M 
Sbjct: 717 YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV 776

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G  PDV  Y+ LI+        D A  +F+EM K    PN  TY  L     AAG+
Sbjct: 777 KLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 834



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 73/381 (19%), Positives = 137/381 (35%), Gaps = 41/381 (10%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +V   +   R     +++  +   G +P    + ++I G     R+++   F D+  
Sbjct: 302 YNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEAL 361

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 DV  Y  +I      K  D+A  +FE++K     PN   Y  +++    AG+++
Sbjct: 362 ------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIE 415

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
                  DM+ +     +  Y  +I          D  A K+ E + Q        T   
Sbjct: 416 DGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPD--ACKVFEQMVQKGCVPDTITYTT 473

Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT--------VYHVAFHACAELKDVQA 275
             +    G SK        A  +      L  +LT         Y    H   +L  +  
Sbjct: 474 LID----GFSK--------ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINE 521

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            + ++  +++    P ++I    +  YL  G  +  ++V  +       P   LY +L++
Sbjct: 522 AKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLID 581

Query: 336 GAMF--GYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393
             +F  G  P+   +  D+++         +P   +   ++    K G    A  I +LM
Sbjct: 582 -LLFSTGRVPEARHVF-DSMIEKGC-----APDALTYGTIIQNFSKIGNVEAAGEILELM 634

Query: 394 QARKITPSLPAVEAYYNGLKD 414
               + P   A    YN L D
Sbjct: 635 AKSGVGPDCFA----YNSLMD 651



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%)

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
           +M   G +PDV   N +++   K +  D+AI +F EM     +P   +Y  +++  A+  
Sbjct: 10  EMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASID 69

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           ++D  Y     M   G   D   +  LI
Sbjct: 70  KMDEAYKFFNSMIDNGCEPDVIAFTTLI 97


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-VGTMKGSRLQDTFFF 98
           N + YN V+  L  +     +  +   M L+G  P    +++++ +   KG        F
Sbjct: 432 NVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVF 491

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R +MK  GF PD   +N LIS  G+C +++ A ++ EEM K    P   TY  LLNA A 
Sbjct: 492 R-EMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALAR 550

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
            G      +++ DM   G    +  Y+ ++ ++      A     K IE++E+S
Sbjct: 551 RGDWKAAESVILDMRNKGFRPSETSYSLMVHSY------AKGGNVKGIEMIEKS 598



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 113/279 (40%), Gaps = 18/279 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E    N   +A  YN VV +            V D M   G+ P    + ++I    +  
Sbjct: 353 EMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVG 412

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
            +       DQM   G +P+VA YN ++ + GK   S++ ++I   MK     PN  T+ 
Sbjct: 413 DIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWN 472

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            +L  C   G    V  + R+M   G   D+  +  LI+A+  +    +D A    E+++
Sbjct: 473 TMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAY-GRCGSNNDAAKMHEEMIK 531

Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
              G+S    + N   N    +++   +    +  +  R        T Y +  H+ A+ 
Sbjct: 532 A--GFSPCINTYNALLN---ALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKG 586

Query: 271 KDVQAMETLLEMLKKDRKSPDVY--------IVMQNIRC 301
            +V+     +EM++K     D++        +V+ N +C
Sbjct: 587 GNVKG----IEMIEKSIYDGDIFPSWMLLRTLVLANFKC 621



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 1/158 (0%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           +Y  +   Y T++ + +   ++    ++++ M   G+ P+   ++ ++    K  R  D 
Sbjct: 217 DYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDK 276

Query: 96  FF-FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                D+M++ G   D    + ++S CG+    D+A   F  +K    KP   TY  LL+
Sbjct: 277 ILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLH 336

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
               AG      +++ +M       D   Y  ++ A+ 
Sbjct: 337 VFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYV 374



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           F   +K+ G+ P    YN L+ V GK     +A+ +  EM++    P+  TY  ++ A  
Sbjct: 315 FFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYV 374

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIEL 208
            AG  +    ++  M + G   +   Y  +I A+     I +A +   +++EL
Sbjct: 375 RAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMEL 427



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/164 (18%), Positives = 64/164 (39%)

Query: 14  VGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
           V G +GR +       +E   R    +    +TV+++   +      R+ +  +  +G +
Sbjct: 266 VYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYK 325

Query: 74  PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
           P    +++L+    K     +      +M+ N   PD   YN +++   +    ++   +
Sbjct: 326 PGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVV 385

Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
            + M    + PN  TY  ++NA    G +D    +   M   G 
Sbjct: 386 IDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGC 429



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 65/336 (19%), Positives = 123/336 (36%), Gaps = 44/336 (13%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           Y      YN ++        F     V  +M  +   P    ++ ++   ++    ++  
Sbjct: 324 YKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGA 383

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
              D M + G +P+   Y  +I+  G+  + D+A+ +F++M +    PN  TY  +L   
Sbjct: 384 VVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGML 443

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--------AHTNKIPRA---------D 199
                 + +  I+  M   G   +   +  ++          + N++ R           
Sbjct: 444 GKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDR 503

Query: 200 DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259
           DT   +I         S+    G+N +   M    EE+           + GF S  +  
Sbjct: 504 DTFNTLI---------SAYGRCGSNNDAAKM---HEEMI----------KAGF-SPCINT 540

Query: 260 YHVAFHACAELKDVQAMET-LLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317
           Y+   +A A   D +A E+ +L+M  K  R S   Y +M  +  Y   G++     + + 
Sbjct: 541 YNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLM--VHSYAKGGNVKGIEMIEKS 598

Query: 318 YICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTL 353
               + FP   L  TLV       +  GM+ A   L
Sbjct: 599 IYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQAL 634


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 4/152 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y TVV+ L   RRF     ++++M+  G++P      +LI G  K  ++ + F    +M 
Sbjct: 303 YTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRML 362

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                 +V++YN LIS   +  + ++A +    M++   +P+  TY  LLN   + G  D
Sbjct: 363 TLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTD 422

Query: 164 PVYAIVRDMTAAGAGLDKFCY----AGLITAH 191
               ++R M  +G   D++ Y     GL  AH
Sbjct: 423 KAENLIRKMEMSGVNPDRYSYNILLKGLCKAH 454



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 20  RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
           RRF       EE  RR    +      ++  L   ++     ++   M+   +Q    ++
Sbjct: 314 RRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIY 373

Query: 80  HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           ++LI G  +   ++  +     M+ NG  PDV  YN L++       +D+A  +  +M+ 
Sbjct: 374 NALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEM 433

Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---------LDKFCYAGLITA 190
             V P+  +Y  LL     A QLD  +A V D    G           +D FC A  + +
Sbjct: 434 SGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNS 493

Query: 191 HTN 193
             N
Sbjct: 494 ALN 496



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           M + GV P R  ++ L+ G  K  +L   F F  D M+  GF  D+   N LI    + K
Sbjct: 431 MEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFC-DIVSCNILIDAFCRAK 489

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             + A+ +F+EM    ++ +  TY  L+N     G
Sbjct: 490 KVNSALNLFKEMGYKGIQADAVTYGILINGLFGIG 524



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 64/152 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    +A  Y  ++  L       L  +++D M+   + P  ++++ ++    K 
Sbjct: 499 KEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKV 558

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
              +       QM      PD   +N LI   GK   + +A+ +F+EM+   V+P+  T+
Sbjct: 559 GHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTF 618

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
             +++     G+    Y I   M   G  LD+
Sbjct: 619 RYIISGLLDEGKATLAYEIWEYMMENGIILDR 650



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           N  V  L    R +    + + M + G  P    + +++       R  +     ++M  
Sbjct: 269 NIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVR 328

Query: 105 NGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            G  PDV     LI   G CKN   D+A  +   M   +++ N   Y  L++    AG +
Sbjct: 329 RGLKPDVVACGALIF--GLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSI 386

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           +  Y  V  M   G   D   Y  L+  H   I   D  A  +I  +E S
Sbjct: 387 EKAYKTVSFMQRNGCEPDVVTYNILLN-HYCSIGMTDK-AENLIRKMEMS 434


>gi|397621823|gb|EJK66480.1| hypothetical protein THAOC_12600 [Thalassiosira oceanica]
          Length = 820

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 38/193 (19%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL--IVGTMKGSRLQ 93
           N   + S Y T++ SL S+++F  +  +   M   GV+PT   F++L  +  + K  R +
Sbjct: 348 NLNPSLSVYQTLLVSLASKQQFSQMNTLLTSMRRRGVRPTVYTFNALLKVCASSKSPRWR 407

Query: 94  DTFFFRDQ------------------------------------MKANGFLPDVAVYNYL 117
           +      Q                                    MK  G   DV  Y   
Sbjct: 408 EAVSLLSQCQREPGVSPDIITYTSTMRALAKGKQARKALDLFRAMKDTGIQLDVFAYTTT 467

Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           +  C K  N  +A+++ EEM++  V PN  TY   +NAC   GQ     ++++ M  +G 
Sbjct: 468 MDACAKTNNWKKALQLLEEMRENNVPPNEVTYGVAVNACGNGGQWQTALSLLQTMNDSGM 527

Query: 178 GLDKFCYAGLITA 190
            ++   Y   I A
Sbjct: 528 RINSITYNSAIAA 540



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 18/177 (10%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE    N   N   Y   V +  +  ++     +   M   G++     ++S I    K 
Sbjct: 485 EEMRENNVPPNEVTYGVAVNACGNGGQWQTALSLLQTMNDSGMRINSITYNSAIAALSKA 544

Query: 90  SRL----------QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
           +RL          + T     +M + G   D   Y+  ISVCG     ++A+R+  +MK 
Sbjct: 545 ARLDAGPDPNVLWEKTQHILGEMHSRGVRQDTFTYSSAISVCGSAGRWEEAVRLIHQMK- 603

Query: 140 YEVKPNGQ------TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            +   NG        +   + ACA + Q DP   + ++M   G   D   +  LI A
Sbjct: 604 -DSGTNGTKRNKIVAFTSAITACANSKQWDPANQLFQEMKRDGLAPDLVAFNALIGA 659



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 14/155 (9%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRD----------VYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           N+  YN+ + +L+   R     D          +  +M   GV+     + S I      
Sbjct: 530 NSITYNSAIAALSKAARLDAGPDPNVLWEKTQHILGEMHSRGVRQDTFTYSSAISVCGSA 589

Query: 90  SRLQDTFFFRDQMKANGF----LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145
            R ++      QMK +G        +  +   I+ C   K  D A ++F+EMK+  + P+
Sbjct: 590 GRWEEAVRLIHQMKDSGTNGTKRNKIVAFTSAITACANSKQWDPANQLFQEMKRDGLAPD 649

Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
              +  L+ A  AAG+ D VY + R++ A+    D
Sbjct: 650 LVAFNALIGAGMAAGRPDEVYHLWREIGASNLSPD 684


>gi|224576639|gb|ACN56993.1| At1g03560-like protein [Capsella grandiflora]
          Length = 196

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIXKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+      +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCXFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 158



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ VV  L    R     D +     +G+      + SLI G  K  R+ +     ++M 
Sbjct: 60  YSVVVNGLCKNGRVEEALDYFQTCXFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMS 119

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
             G   D   YN LI    K    D+A+ +F+ M++ E
Sbjct: 120 EKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEE 157


>gi|298709593|emb|CBJ31419.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1263

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 2/154 (1%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            +A  +NT++  L     +    D++  M    V+P    F++L+ G  K      T    
Sbjct: 940  DAFPFNTIIKGLMKTLEWEKAMDLFRGMRYHNVKPNLLTFNTLMAGLNKAHVPAVTLELY 999

Query: 100  DQM-KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D+M +  G  PDV  Y+ L++   +  + + A++   +M K  VKPN  T   ++ AC  
Sbjct: 1000 DEMMEVGGMAPDVYTYSSLVTAYARLGDVENAVKTLSDMSKSGVKPNRFTLSSVMQACIK 1059

Query: 159  AGQLDPVYAIVRDMTAAGA-GLDKFCYAGLITAH 191
             GQ    + + R +T  GA   D+     L+ AH
Sbjct: 1060 GGQPKTAFQVHRQLTKNGAVPTDEVIATLLVQAH 1093


>gi|295830917|gb|ADG39127.1| AT5G21222-like protein [Capsella grandiflora]
          Length = 166

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 13  YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 72

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ E M + E ++PN +T   L+ A     ++
Sbjct: 73  ESGCKPTTSTFNTLIKGYGKIGKLEESSRLLELMLRDEMLQPNDRTCNILVQAWCNQRKI 132

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +  + IV  M + G   D   +  L  A+
Sbjct: 133 EEAWNIVYKMQSYGVKPDVVTFNTLAXAY 161



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   +  N
Sbjct: 1   LIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 61  LDQAMKIFEKMKESGCKPTTSTFNTLIKGYGKIGKLE 97


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 2/168 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++   +R +  +++Y +M  +G+Q +   + +L+    +    +D      +MK
Sbjct: 319 YNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMK 378

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQL 162
             G    V +YN L+++C     +++A  IFE+MK      P+  T+  L+   + +G++
Sbjct: 379 EKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKV 438

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               A++  M  AG   + F    LI  +  K  R D+       L+E
Sbjct: 439 SEAEAMLNAMLEAGFEPNIFVLTSLIQCY-GKANRTDEVVRTFDRLLE 485



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +VY++M   GV+P   ++++L+    +  R         +M  NG       Y  L+   
Sbjct: 302 NVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAY 361

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-D 180
           G+ + ++ A+ +++EMK+  ++ +   Y  LL  CA  G  +   AI  DM ++G  + D
Sbjct: 362 GRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPD 421

Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIE 207
            + ++ LIT +  + K+  A+     ++E
Sbjct: 422 SWTFSSLITIYSCSGKVSEAEAMLNAMLE 450



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 118/311 (37%), Gaps = 46/311 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN  +      R       ++D+M+  GV+P    F ++I      S       + ++M 
Sbjct: 179 YNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMP 238

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIR------------------------------- 132
             G  PD   Y+ +I   G+  N D A++                               
Sbjct: 239 EFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFD 298

Query: 133 ----IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
               ++EEMK   VKPN   Y  LL+A   A +      I ++MT  G  L    YA L+
Sbjct: 299 GCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALL 358

Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE---LYNLPTAEY 245
            A+  +   A+D      E+ E+    S V  +   A    +G ++E      ++ ++  
Sbjct: 359 RAY-GRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGN 417

Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
                   S L+T+Y     +C+    V   E +L  + +    P+++++   I+CY  +
Sbjct: 418 CMPDSWTFSSLITIY-----SCS--GKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKA 470

Query: 306 GDIDNGHKVFE 316
              D   + F+
Sbjct: 471 NRTDEVVRTFD 481



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
           FFR ++K +    +V +YN  + V  KC+N D A ++F+EM +  VKP+  T+  ++ +C
Sbjct: 165 FFRKRLKPSR---EVILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTII-SC 220

Query: 157 AAAGQLDPVYAI--VRDMTAAGAGLDKFCYAGLITAH 191
           A    L P  A+     M   G   D   Y+ +I A+
Sbjct: 221 ARVSSL-PNKAVEWFEKMPEFGCHPDDVTYSAMIDAY 256



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 63  VYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++DM   G   P    F SLI       ++ +     + M   GF P++ V   LI   
Sbjct: 408 IFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCY 467

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           GK   +D+ +R F+ + + ++ P+ +   C+LN
Sbjct: 468 GKANRTDEVVRTFDRLLELDITPDDRFCGCMLN 500


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 63/117 (53%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ +++ + R   L+++  DM  +G+ P R  +++L+ G  K   L++ F   + MK
Sbjct: 243 YNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
               LPD+  YN LI+      +  + + + + MK  +++P+  TY  L++ C   G
Sbjct: 303 QTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELG 359



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 11/212 (5%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +       S +N+++  L    +  L  + +D++   G+ P    F+S+I+G  K 
Sbjct: 510 DEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKE 569

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQ 147
            R++  F F ++   + F PD    N L++  G CK   +++A+  F  + + E + +  
Sbjct: 570 GRVEKAFEFYNESIKHSFKPDNYTCNILLN--GLCKEGMTEKALNFFNTLIE-EREVDTV 626

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKI 205
           TY  +++A     +L   Y ++ +M   G   D+F Y   I+      K+   D+   K 
Sbjct: 627 TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKF 686

Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
                  K    VET  N A +E    SKEEL
Sbjct: 687 SGKFGSMKRDLQVETEKNPATSE----SKEEL 714



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 24/227 (10%)

Query: 72  VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQ 129
           V P    +++++    K  RL D       MK NG +P+   YN L  V G CK  +  +
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNL--VYGYCKLGSLKE 293

Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           A +I E MK+  V P+  TY  L+N    AG +     ++  M +     D   Y  LI 
Sbjct: 294 AFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLI- 352

Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
                     D   ++   +E  K    +E  G  A      +S + L      E V R+
Sbjct: 353 ----------DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRK 402

Query: 250 -------GGFLSRLLTVYHVAFHACAELKDVQ-AMETLLEMLKKDRK 288
                   GF   ++T YH    A  ++ D+  A+E + EM +K  K
Sbjct: 403 VKELVDMHGFSPDIVT-YHTLIKAYLKVGDLSGALEMMREMGQKGIK 448



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM----KANGFLPDVAVYNY 116
           R+V+DDM+  GV      F+ L+ G     +L+D     ++M    K N   PD   YN 
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVN---PDNVTYNT 245

Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           ++    K         +  +MKK  + PN  TY  L+      G L   + IV  M    
Sbjct: 246 ILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTN 305

Query: 177 AGLDKFCYAGLITAHTN 193
              D   Y  LI    N
Sbjct: 306 VLPDLCTYNILINGLCN 322


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 8/254 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V  +M   G+ P   ++++ + G +K    +       +MK      +   +  +I+V G
Sbjct: 34  VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 93

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K K    ++++F EMK    KPN  TY  L+NA A  G  +    +  +M  AG   D +
Sbjct: 94  KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVY 153

Query: 183 CYAGLITAHTNK-IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
            Y  L+ A++   +P+    A++I  L+ Q  G      S N   +      +  L+   
Sbjct: 154 AYNALMEAYSRAGLPQG---ASEIFSLM-QHMGCEPDRASYNILVD---AYGRAGLHEDA 206

Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
            A +   +   +S  +  + +   A A   +    E ++  L K   +PD + +   +  
Sbjct: 207 EAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNA 266

Query: 302 YLHSGDIDNGHKVF 315
           Y  +G +D+  ++F
Sbjct: 267 YARAGRLDDMERLF 280



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   Y  +V +   +       +V+++M   G +P    +++L+    +    Q      
Sbjct: 116 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 175

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             M+  G  PD A YN L+   G+    + A  +FEE+K+  + P  ++++ LL A A +
Sbjct: 176 SLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARS 235

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
           G       ++  +  +G   D F    ++ A+  +  R DD
Sbjct: 236 GNATRCEEVMAQLHKSGLTPDTFALNAMLNAYA-RAGRLDD 275


>gi|242038267|ref|XP_002466528.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
 gi|241920382|gb|EER93526.1| hypothetical protein SORBIDRAFT_01g009420 [Sorghum bicolor]
          Length = 595

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           F++L+ G +   R +D F    QM+  G  P+   Y  LI   G     D+A+R+F EM+
Sbjct: 227 FNTLLAGFVADGRFEDAFELTGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVEMR 286

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
           +    P+  TY  L++    AG++   Y  +  ++  G  +D   Y G   AH  K    
Sbjct: 287 RKGCAPDAVTYGTLVSTFCKAGKISQGYEFLDAISRDGLRVDAAVYHGFFVAHEKK---- 342

Query: 199 DDTATKIIELVEQSK 213
            +   + +EL+E+ +
Sbjct: 343 -EQLEECLELMERMR 356



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 11/166 (6%)

Query: 16  GALGR-----RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD 70
           GA GR     R FV      E  R+  A +A  Y T+V++     +     +  D +  D
Sbjct: 270 GARGRVDEAMRVFV------EMRRKGCAPDAVTYGTLVSTFCKAGKISQGYEFLDAISRD 323

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++    ++H   V   K  +L++     ++M+     PD+ +YN +I +  +   + QA
Sbjct: 324 GLRVDAAVYHGFFVAHEKKEQLEECLELMERMRECRCPPDLKIYNVVIRLACRLGETKQA 383

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           + ++ EM+   + P   T+  ++N     G L    +  +DM   G
Sbjct: 384 MSLWNEMETGGLSPGVDTFAIMVNGLVGQGLLVEACSYFKDMVGRG 429


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 119/281 (42%), Gaps = 16/281 (5%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V+D M+ +GV+P    +++L+          +       +K NG  PD+  Y  L++ 
Sbjct: 350 KAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNA 409

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            G+    ++A  +F EM+K   KPN  +Y  L++A  +AG L    +++ +M   G   D
Sbjct: 410 YGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPD 469

Query: 181 KFCYAGLITA--HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238
               + L+TA     ++ + D     II    +S+G      + N+     + +     Y
Sbjct: 470 VISISTLLTACGRCKQLTKID-----IILAAAKSRGIQLNTVAYNSGIGSYLSLGD---Y 521

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL-KDVQAMETLLEMLKKD-RKSPDVYIVM 296
                 Y   R G +      Y++      +L + V++++   +ML  +   + +VY   
Sbjct: 522 KKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVY--- 578

Query: 297 QNIRC-YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
            ++ C Y+  G +      F     +  FP    Y TL++ 
Sbjct: 579 SSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKA 619



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           N   +A  YN +++      R+      ++DM+   +  T++++ S+I   +K  +L + 
Sbjct: 535 NVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEA 594

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               + MK  G  PDV  Y  LI       +  +A  +F+EM+    +P+      L+ A
Sbjct: 595 ASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEA 654

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
               GQ + V  ++  M      L++  Y  +I++ T  + R   TA++IIE ++ S
Sbjct: 655 LNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCT--MLRDWKTASQIIEHLDSS 709



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
            FF  +M+     P+   YN LI    +      AI I ++M++  + P+  TY  ++NA
Sbjct: 175 LFF--EMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINA 232

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
           C AAG       + + MT  G G D   +  +++A  N
Sbjct: 233 CGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKN 270



 Score = 45.1 bits (105), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 45/104 (43%)

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
           + GS       FR       +     +Y  +I +  +    DQA  +F EM+++  KPN 
Sbjct: 129 ISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKPNT 188

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            TY  L++A A AGQ      I+ DM  A     +  Y  +I A
Sbjct: 189 DTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINA 232



 Score = 44.7 bits (104), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 48/109 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN+++ +     ++    ++ DDM    + P+R  ++++I         +      
Sbjct: 187 NTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALELC 246

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            +M  NG  PD+  +N ++S         +AI  FE MK  +V P+  T
Sbjct: 247 KKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCT 295



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 6/156 (3%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF-HSLIVGTMK-GSRLQDTFFFR 99
           + YN V+ +  +   +    ++   M  +GV P  DL  H++++   K G++      + 
Sbjct: 224 TTYNNVINACGAAGNWKKALELCKKMTENGVGP--DLITHNIVLSAFKNGAQYSKAIAYF 281

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM--KKYEVKPNGQTYVCLLNACA 157
           + MK++   PD    N +I    K     +AI +F  M  ++    P+  TY  ++ + +
Sbjct: 282 EIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYS 341

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
             GQ +   A+   M A G   +   Y  L+ A+ +
Sbjct: 342 VCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYAS 377



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 50/120 (41%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           R ++ +M     +P  D ++SLI    +  +        D M+     P    YN +I+ 
Sbjct: 173 RGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINA 232

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           CG   N  +A+ + ++M +  V P+  T+  +L+A     Q     A    M ++    D
Sbjct: 233 CGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPD 292



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 48/123 (39%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G+Q     ++S I   +     +        M+A    PD   YN LIS   K     ++
Sbjct: 500 GIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVES 559

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++ FE+M    +    + Y  ++ +    G+L    +    M   G   D   Y  LI A
Sbjct: 560 LKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKA 619

Query: 191 HTN 193
           +++
Sbjct: 620 YSD 622


>gi|399107214|gb|AFP20371.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+      +  N   Y  L++    AG+
Sbjct: 82  BEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 190


>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
           CCMP526]
 gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
 gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
          Length = 1057

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 148/378 (39%), Gaps = 35/378 (9%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A+N   YN+ + + +S  R  L   +   M  +GV+P  D+     V  M+ S +     
Sbjct: 511 ASNVVTYNSAMQACSSGGRPDLAFQLLQVMKANGVEP--DVVSYTTV--MQRSSVDVATS 566

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             ++M+A G    V  YN L++ C +  +   ++ + EEM    V PN  TY   + AC 
Sbjct: 567 VLNRMRAAGVSVGVMTYNALLNACAREGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACG 626

Query: 158 AAGQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             GQ      ++ +MT  G  LD K C   +      K+   +   + + ++  Q +   
Sbjct: 627 RGGQWQAALEVLNEMTVRGVPLDSKACQTAIDVC--AKVQDWNKALSLLRDVSAQGRDGI 684

Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL-----------TVYHVAFH 265
             + SG            +ELY    A +   R G   ++L            V ++A  
Sbjct: 685 GDQGSGKGG--------TKELYEKAMAAF--GRAGEWEKVLWLLEGMDRPDQKVTNLAMR 734

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
           ACA+    +    LL+ +     +PD +     I     +G+ +   K+ ++       P
Sbjct: 735 ACAQAGRWEEAVGLLQNMTSKGIAPDQWSYNTAIHACAQAGNAEKALKLLKEMGQEGVVP 794

Query: 326 PAELYATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384
               Y T ++  A  G     ++L    L  M  + +   P   S   +++A   +G  T
Sbjct: 795 DVVSYTTAMDACASVGDVETSLRL----LEEMVKKGVH--PNHRSFNAIMSAHGNAGQAT 848

Query: 385 TANYIWDLMQARKITPSL 402
            A  +  LM    +TP +
Sbjct: 849 EAIAVLGLMTEHGLTPDV 866



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 54/122 (44%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +  +M   G+ P +  +++ I    +    +       +M   G +PDV  Y   +  C 
Sbjct: 748 LLQNMTSKGIAPDQWSYNTAIHACAQAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACA 807

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
              + + ++R+ EEM K  V PN +++  +++A   AGQ     A++  MT  G   D  
Sbjct: 808 SVGDVETSLRLLEEMVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTPDVK 867

Query: 183 CY 184
            Y
Sbjct: 868 SY 869



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 43  EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           +Y  V+     Q R+F    +  DM   G  P    + +++    K  + +       +M
Sbjct: 210 QYTLVIQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWEAALTLIPEM 269

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
           K  G  PD   YN  I  C K     +A+     M+    +PN  +Y   L++CA  G+ 
Sbjct: 270 KEAGVRPDRITYNTAIDACAKGGQWQRALEFLRGME----EPNLISYNSALDSCAKTGRW 325

Query: 163 DPVYAIVRDMTAAG 176
                ++ +M  AG
Sbjct: 326 KEAVGLLEEMRQAG 339



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168
           P V  Y  +I +C + +   +A+R+  +M+     P+   Y  +++ CA AGQ +    +
Sbjct: 206 PSVQQYTLVIQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWEAALTL 265

Query: 169 VRDMTAAGAGLDKFCYAGLITA 190
           + +M  AG   D+  Y   I A
Sbjct: 266 IPEMKEAGVRPDRITYNTAIDA 287


>gi|224576625|gb|ACN56986.1| At1g03560-like protein [Capsella rubella]
 gi|224576631|gb|ACN56989.1| At1g03560-like protein [Capsella rubella]
 gi|224576633|gb|ACN56990.1| At1g03560-like protein [Capsella rubella]
          Length = 196

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHT 192
            +CY  LI A T
Sbjct: 127 SYCYNALIDALT 138



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L + +   + M   G  P+VA+Y  LI    K  + + AIR+   M     KP+  TY 
Sbjct: 2   KLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYS 61

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            ++N     G+++      +     G  ++   Y+ LI     K  R D+      E+ E
Sbjct: 62  VVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG-LGKAGRIDEAERLFEEMSE 120

Query: 211 Q 211
           +
Sbjct: 121 K 121


>gi|341606821|gb|AEK83513.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 205

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 17  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 76

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 77  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGR 134

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
           +D    +  +M+  G   D +CY  LI A T
Sbjct: 135 IDEAERLFEEMSEKGCTRDSYCYNALIDALT 165



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 61  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSM 120

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 121 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 148


>gi|255685744|gb|ACU28361.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 178

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 8   VFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVN--G 65

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 66  LCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRD 125

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 126 SYCYNALIDAFT-KHGKVDE-ALALFKRMEEEEG 157


>gi|224576661|gb|ACN57004.1| At1g03560-like protein [Capsella grandiflora]
          Length = 207

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +      N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 158


>gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405
 gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 458

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 17  ALGRRFFVTSAGAEEYARRNY--ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
            LG   FV  A A  Y  + Y    +   YNT++ +L     F   R + D M L G + 
Sbjct: 174 CLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRY 233

Query: 75  TRDLFHSLIV-------GTMKGSR-------LQDTFFFRDQMKANGFLPDVAVYNYLISV 120
             D +   I+       G   G R        +    FR+ M   GF+PDV  YN LI  
Sbjct: 234 PPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFRE-MLFRGFVPDVVTYNCLIDG 292

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
           C K     +A+ +FE+MK     PN  TY   +   +   +++    ++R M   G G+ 
Sbjct: 293 CCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVP 352

Query: 181 -KFCYAGLITAHTNKIPRADDTATKIIELVE 210
               Y  LI A   +  RA +    ++E+VE
Sbjct: 353 GSSTYTPLIHALV-ETRRAAEARDLVVEMVE 382


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 6/294 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 416

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ + M + E ++PN +T   L+ A     ++
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 476

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
           +  + IV  M + G   D   +  L  A+  +I         II  +  +K   +V T G
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYA-RIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535

Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
                       EE        Y  +  G    L  V++        + D+  +  ++++
Sbjct: 536 TIVNGYCEEGKMEEALRF---FYRMKELGVHPNLF-VFNSLIKGFLNINDMDGVGEVVDL 591

Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
           +++    PDV      +  +   GD+    +++ D +     P    ++ L +G
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 52/101 (51%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +++ ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           +  N DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLE 441



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++T++ + +S        ++Y DM+  G+ P    F  L  G  +    +      +QM+
Sbjct: 604 FSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 663

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAGQL 162
             G  P+V +Y  +IS         +A++++++M     + PN  TY  L+     A Q 
Sbjct: 664 KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQP 723

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
                +++DM                    N +P       K ++L+  + GW S+  S 
Sbjct: 724 WKAEELLKDMEGK-----------------NVVP-----TRKTMQLI--ADGWKSIGVSN 759

Query: 223 NNAENEM-MGVSKEELYNLPTAEYVHRRGGFL 253
           +N  N +    S     N+P      R   FL
Sbjct: 760 SNDANTLGSSFSTSSKLNIPNNIASSRSPLFL 791



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 2/152 (1%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           GV P   +F+SLI G +  + +       D M+  G  PDV  ++ L++      +  + 
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             I+ +M +  + P+   +  L    A AG+ +    I+  M   G   +   Y  +I+ 
Sbjct: 621 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 680

Query: 191 HTN--KIPRADDTATKIIELVEQSKGWSSVET 220
             +  ++ +A     K+  +V  S   ++ ET
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPNLTTYET 712


>gi|341605723|gb|AEK82964.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L+     AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIXGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 188



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 4   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 64  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSM 123

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 124 FYSSLIXG-LGKAGRIDEAERLFEEMSEK 151


>gi|341605695|gb|AEK82950.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+  +   +  N   Y  L++    AG+
Sbjct: 80  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMMLFKRMEEEEG 188



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           +Y +M   G+Q    +F  +I G  K  +L + +   + M   G  P+VA+Y  LI    
Sbjct: 4   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 63

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K  + + AIR+   M     KP+  TY  ++N     G+++      +     G  ++  
Sbjct: 64  KSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSM 123

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQ 211
            Y+ LI     K  R D+      E+ E+
Sbjct: 124 FYSSLIDG-LGKAGRIDEAERLFEEMSEK 151


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 22  FFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
           F +TS G        +  +   YN++++  ++        ++Y+ M   G++PT + FH 
Sbjct: 476 FLITSTG--------HCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHP 527

Query: 82  LIVGTMK-GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
           LI G  K G +L++T F  ++M      PD  VYN +I    +  +  +A  + +EM   
Sbjct: 528 LISGCSKEGIKLKETLF--NEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDM 585

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
            V+P+ +TY  L+      G+L     +V DM A G   +   Y+ LI  H +
Sbjct: 586 GVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCD 638



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 131/314 (41%), Gaps = 19/314 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E + RN   N   +NT++          +   + + M  + V+P+   F+SL+ G  K  
Sbjct: 126 EMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKAR 185

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD---QAIRIFEEMKKYEVKPNGQ 147
           R+++     +++K NGF+PD   Y+ +    G  K+ D    A+ ++ E     VK +  
Sbjct: 186 RIEEARCMLNEIKCNGFVPDGFTYSIIFD--GLLKSDDGAGAALDLYREAIGKGVKIDNY 243

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
           T   LLN     G+++    +++ +   G    +  Y  ++  +  +I   D     I +
Sbjct: 244 TCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYC-QIGDMDRAILTIEQ 302

Query: 208 LVEQSKGWSSVETSGNNAEN---EMMGVSKEELYNLPTAEYVHRR-GGFLSRLLTVYHVA 263
           +  +S+G      + N+  +   EM  + K E       E+V +  G  ++  +  Y++ 
Sbjct: 303 M--ESRGLRPNCIAFNSVIDKFCEMQMIDKAE-------EWVKKMVGKGIAPSVETYNIL 353

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
                 L        +LE ++++ + P+V      I C    G I     V  D +    
Sbjct: 354 IDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGV 413

Query: 324 FPPAELYATLVEGA 337
            P A +Y  L++G+
Sbjct: 414 LPNANIYNMLIDGS 427



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 124/315 (39%), Gaps = 17/315 (5%)

Query: 29  AEEYARR----NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AEE+ ++      A +   YN ++        F     + ++M  +G +P    + SLI 
Sbjct: 331 AEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLIN 390

Query: 85  GTMK-GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYE 141
              K G  L+     RD M   G LP+  +YN LI   G C      +A+R F+EM K  
Sbjct: 391 CLCKDGKILEAEMVLRD-MVGRGVLPNANIYNMLID--GSCTVGKLREALRFFDEMSKNG 447

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201
           +     TY  L+      G+L     +   +T+ G   D   Y  LI+ ++N        
Sbjct: 448 IGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNA-----GN 502

Query: 202 ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261
           + K +EL E  K    ++ + N     + G SKE +  L    +       LS    VY+
Sbjct: 503 SQKCLELYETMKKL-GLKPTINTFHPLISGCSKEGI-KLKETLFNEMLQMNLSPDRVVYN 560

Query: 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321
              H   E   VQ   +L + +      PD       I  +L  G +     + +D    
Sbjct: 561 AMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAK 620

Query: 322 EKFPPAELYATLVEG 336
              P A+ Y+ L++G
Sbjct: 621 GLIPEADTYSLLIQG 635



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 122/313 (38%), Gaps = 15/313 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+   R    N   +N+V+      +      +    M+  G+ P+ + ++ LI G  + 
Sbjct: 301 EQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRL 360

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
                 F   ++M+ NG  P+V  Y  LI+   K     +A  +  +M    V PN   Y
Sbjct: 361 CVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIY 420

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIE 207
             L++     G+L        +M+  G G     Y  LI       K+  A++    I  
Sbjct: 421 NMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITS 480

Query: 208 L--VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
                    ++S+ +  +NA N    +   ELY     E + + G  L   +  +H    
Sbjct: 481 TGHCPDVITYNSLISGYSNAGNSQKCL---ELY-----ETMKKLG--LKPTINTFHPLIS 530

Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
            C++ + ++  ETL   + +   SPD  +    I CY  +G +     + ++ +     P
Sbjct: 531 GCSK-EGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRP 589

Query: 326 PAELYATLVEGAM 338
             + Y +L+ G +
Sbjct: 590 DNKTYNSLILGHL 602



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 16/129 (12%)

Query: 54  QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
           Q+ F L +++ D     GV+P    ++SLI+G +K  +L +T    D MKA G +P+   
Sbjct: 573 QKAFSLQKEMVDM----GVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADT 628

Query: 114 YNYLISVCGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA----GQLDPVYA 167
           Y+ LI   G C  K+ + A   + EM +    PN    VC+ N  +      G+L    +
Sbjct: 629 YSLLIQ--GHCDLKDFNGAYVWYREMLENGFLPN----VCICNELSTGLRKDGRLQEAQS 682

Query: 168 IVRDMTAAG 176
           I  +M A G
Sbjct: 683 ICSEMIANG 691



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
           L  ++++ M    V P   +++ LI G  K  R++D      +M     +P+   +N LI
Sbjct: 84  LAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLI 143

Query: 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
               K    D AI + E MKK +V+P+  T+  LL+    A +++    ++ ++   G  
Sbjct: 144 DGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFV 203

Query: 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            D F Y+ +       + ++DD A   ++L  ++ G
Sbjct: 204 PDGFTYSIIFDG----LLKSDDGAGAALDLYREAIG 235



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           +V SL   ++F  + D++ +M+  G +P + ++   ++  +K   L+      + MK   
Sbjct: 37  IVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRK 96

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +P+V VYN LI    K K    A ++F EM    + PN  T+  L++    AG++D
Sbjct: 97  VVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVD 153


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 130/341 (38%), Gaps = 49/341 (14%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +RN A +   Y  +V +L    R      + +DM+  G  P    +++LI G  K   + 
Sbjct: 229 QRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMD 288

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVC 151
           +     +QM  N   PDV  YN LI   G CK        ++ +EM KY  +PN  TY  
Sbjct: 289 EAVVLFNQMLENSCSPDVFTYNILID--GYCKQERPQDGAKLLQEMVKYGCEPNFITYNT 346

Query: 152 LLNACAAAG-----------------------------------QLDPVYAIVRDMTAAG 176
           L+++   +G                                   QLD  Y + + MT  G
Sbjct: 347 LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 406

Query: 177 AGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234
              D + Y  +I+     N+I    D A +++E + ++     V T  +           
Sbjct: 407 CLPDIYTYNIMISGACRANRI----DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQV 462

Query: 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
           +E Y +     V R GG+   ++T   +    C   + +   E LL  ++++  +PDV  
Sbjct: 463 DEAYEVYE---VLRNGGYFLDVVTCSTLIDGLCKS-RRLDDAEKLLREMERNGSAPDVVA 518

Query: 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
               I  +  +  +D     F + +     P    Y+ +++
Sbjct: 519 YTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVID 559



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           R    +A  Y +V+  L     +    ++Y  M   G  PT   ++ L+    K SRL +
Sbjct: 580 RGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDE 639

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                + M+++G LPD   YN +     K    D+A R+F+ MK     P    Y  LL 
Sbjct: 640 AIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLT 699

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLD 180
              A  ++D    I  +   AGA +D
Sbjct: 700 KLVAEEKMDQAMEIWEEALEAGADVD 725



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 10/213 (4%)

Query: 5   QSIYRHHKSVGGALGRRFFVTSAGAEEYAR-RNY-----ANNASEYNTVVTSLTSQRRFF 58
           Q  Y+H K     L   F       E Y   +N+     + ++  Y+T++      R F 
Sbjct: 125 QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQ 184

Query: 59  LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118
               + D+M   G+ P   +++++I G     R+         M+ N   P V  Y  L+
Sbjct: 185 QAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNC-APSVITYTILV 243

Query: 119 -SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
            ++C   + SD ++ I E+M +    PN  TY  L+N     G +D    +   M     
Sbjct: 244 DALCKSARISDASL-ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSC 302

Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             D F Y  LI  +  K  R  D A  + E+V+
Sbjct: 303 SPDVFTYNILIDGYC-KQERPQDGAKLLQEMVK 334



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 17/213 (7%)

Query: 2   RLLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
           R+LQ +    K+V      +FF    G   Y    +  N      ++++   +++     
Sbjct: 104 RVLQQLDDLDKAV------KFFDWCTGQPGYKHSKFTCNC-----LLSAFVRKKKAQEAY 152

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D++ +       P    + +LI G  K    Q  +   D+M+  G +P  AVYN +I   
Sbjct: 153 DLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIK-- 210

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G C N   D A+  + +M++    P+  TY  L++A   + ++     I+ DM  AG   
Sbjct: 211 GLCDNGRVDSALVHYRDMQR-NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAP 269

Query: 180 DKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
           +   Y  LI     K+   D+      +++E S
Sbjct: 270 NVVTYNTLINGFC-KLGNMDEAVVLFNQMLENS 301



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 110/278 (39%), Gaps = 16/278 (5%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN +++      R    R + + M   G  P    ++S++ G  K S++ + +   + ++
Sbjct: 414 YNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 473

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G+  DV   + LI    K +  D A ++  EM++    P+   Y  L++    A QLD
Sbjct: 474 NGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLD 533

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHT-----NKIPRADDTATKIIELVEQSKGWSSV 218
              A   +M      LDK C   +IT         K  R  D    +  ++E+     ++
Sbjct: 534 KSLAFFSEM------LDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAI 587

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
             +     + + G+ K + Y+     Y   +    +  +  Y+V      ++  +     
Sbjct: 588 VYT-----SVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIH 642

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
           LLE+++ D   PD          +  S + D   ++F+
Sbjct: 643 LLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQ 680



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 2/183 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +     N   YNT++ SL    ++    ++   M+    +P+   F+ +I    K 
Sbjct: 330 QEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKV 389

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L   +     M   G LPD+  YN +IS   +    D A ++ E M +    P+  TY
Sbjct: 390 GQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 449

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
             +++    A Q+D  Y +   +   G  LD    + LI     K  R DD A K++  +
Sbjct: 450 NSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC-KSRRLDD-AEKLLREM 507

Query: 210 EQS 212
           E++
Sbjct: 508 ERN 510



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRD---VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
           Y+ V+  L    R   +RD   +   M+  GV P   ++ S+I G  K     + +    
Sbjct: 554 YSIVIDKLCKSAR---VRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYK 610

Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            MK  G  P V  YN L+    K    D+AI + E M+     P+  TY  + +    + 
Sbjct: 611 LMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSA 670

Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
           + D  + + + M + G     F Y+ L+T
Sbjct: 671 EHDKAFRLFQAMKSRGCSPTPFMYSLLLT 699



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 29  AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88
           A+   RR+   +   +N ++       +  L  +++  M   G  P    ++ +I G  +
Sbjct: 364 AQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACR 423

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNG 146
            +R+ D     ++M   G  PDV  YN ++S  G CK S  D+A  ++E ++      + 
Sbjct: 424 ANRIDDARQLLERMTEAGCPPDVVTYNSIVS--GLCKASQVDEAYEVYEVLRNGGYFLDV 481

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            T   L++    + +LD    ++R+M   G+  D   Y  LI
Sbjct: 482 VTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILI 523


>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
 gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
          Length = 426

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 9/176 (5%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  RR  ++NA  YNT++ S +   +      +Y +M   G++PT   F+ L+    +  
Sbjct: 71  EMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSR-- 128

Query: 91  RLQDTFFFRD--QMKANGFLPDVAVYNYLISVCGKCKN-SDQAIRIFEEMKKYEVKPNGQ 147
           R+Q     +   +M+  G  P+   Y  LIS  G+ K  SD A   F  MKK  +KP   
Sbjct: 129 RMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSY 188

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
           +Y  L++A + +G  +  Y    +M   G       Y  L+ A      RA DT T
Sbjct: 189 SYTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDA----FRRAGDTKT 240



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 67/147 (45%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + ++ M   GV+ + ++  +LI         ++    + +M+  G   +  +YN L+   
Sbjct: 32  EFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTLMDSY 91

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    ++A  ++ EM+   +KP   T+  L++A +   Q D +  ++ +M  AG   + 
Sbjct: 92  SKSNQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNA 151

Query: 182 FCYAGLITAHTNKIPRADDTATKIIEL 208
             Y  LI+A+  +   +D  A   + +
Sbjct: 152 KSYTCLISAYGRQKKMSDMAADAFLRM 178



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 54/128 (42%)

Query: 60  LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
           L D++  MM + V+ TR  F+ L+ G  K     +     ++ K  G  P V  YN L++
Sbjct: 241 LMDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMN 300

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
              +     +  ++ +EM   +++P+  TY  ++ A          +   + M  +G   
Sbjct: 301 AYARGGQDSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVP 360

Query: 180 DKFCYAGL 187
           D   Y  L
Sbjct: 361 DAKSYQKL 368



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKG---SRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
            +++M  +G++P+ + + +L+    +      L D +    + K  G       +N L+ 
Sbjct: 209 TFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEG---TRVTFNILLD 265

Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
              K  +  +A  +  E KK+ + P   TY  L+NA A  GQ   +  ++++M       
Sbjct: 266 GFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEMATLKLEP 325

Query: 180 DKFCYAGLITAH 191
           D   Y  +I A+
Sbjct: 326 DSITYTTMIYAY 337


>gi|295830915|gb|ADG39126.1| AT5G21222-like protein [Capsella grandiflora]
          Length = 166

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+VT+LT Q+ F  L  +   +  +G++P   LF+++I  + +   L       ++MK
Sbjct: 13  YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 72

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
            +G  P  + +N LI   GK    +++ R+ E M + E ++PN +T   L+ A     ++
Sbjct: 73  ESGCKPTTSTFNTLIKGYGKIGKLEESSRLLELMLRDEMLQPNDRTCNILVQAWCNQRKI 132

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           +  + IV  M + G   D   +  L  A+
Sbjct: 133 EEAWNIVYKMQSYGVKPDVVTFNTLAKAY 161



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           ++ +G +P+   + +L+    +            +++ NG  PD  ++N +I+   +  N
Sbjct: 1   LIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGN 60

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            DQA++IFE+MK+   KP   T+  L+      G+L+
Sbjct: 61  LDQAMKIFEKMKESGCKPTTSTFNTLIKGYGKIGKLE 97


>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
          Length = 404

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++  A +   YN++++ L S+ +      + ++M   G+ P    F  ++ G  K 
Sbjct: 223 EEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK 282

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             + D   + D M      PDV +YN LI V  +    + A+ + E M K  + PN  TY
Sbjct: 283 GMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTY 342

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
            CL+   + +G       ++ +M   G   D   Y  LI A   K
Sbjct: 343 NCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCK 387



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 2/140 (1%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKC 124
           +M+  G+ PT   F  LI G  K S         ++MK  G    V  YN LIS +C + 
Sbjct: 189 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEG 248

Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
           K  ++ +++ EEM+   + PN  T+ C+L      G +      +  MT      D   Y
Sbjct: 249 K-VEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIY 307

Query: 185 AGLITAHTNKIPRADDTATK 204
             LI  +       D  A K
Sbjct: 308 NILIDVYRRLGKMEDAMAVK 327



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 55/132 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE      + N   +  V+     +       D  D M    V+P   +++ LI    + 
Sbjct: 258 EEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRL 317

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +++D    ++ M   G  P+V  YN LI+   +  +   A  + +EMK+  ++ +  TY
Sbjct: 318 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 377

Query: 150 VCLLNACAAAGQ 161
             L+ A    G+
Sbjct: 378 NVLIGALCCKGE 389


>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
          Length = 788

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 76/167 (45%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ V  ++    R  + R +++ M+ +GV P    +++L+ G     +++    F   MK
Sbjct: 251 YDAVFKAILRSGRVAMARRLFNAMIAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMK 310

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G  PD+  YN +++   + K  D A ++F EM      PN  +Y  ++     +G++D
Sbjct: 311 ERGIAPDLVTYNTILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNIMIKGYVCSGRVD 370

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               +  +M   G    +  +A L+    + + RA +    + E+ +
Sbjct: 371 DGLRMFSEMGEKGLRFSEKTFAALMPGLCDDVGRAAEARKALNEMAK 417



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S YNT++       +    +  + DM   G+ P    +++++ G  +  ++ D      +
Sbjct: 284 STYNTLLWGFCLSIKMETAQRFFADMKERGIAPDLVTYNTILNGWARAKKMDDAEKVFAE 343

Query: 102 MKANGFLPDVAVYNYLIS--VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
           M A GF P+   YN +I   VC      D  +R+F EM +  ++ + +T+  L+
Sbjct: 344 MTAAGFAPNSISYNIMIKGYVCS--GRVDDGLRMFSEMGEKGLRFSEKTFAALM 395


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 29  AEEYARRNYAN----NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
           AE + +   AN    N   +NT++            +  +++M   G++P    ++SLI 
Sbjct: 257 AEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLIN 316

Query: 85  GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144
           G     +L++     D+M   G  P++  YN LI+   K K   +A ++F+++ K E+ P
Sbjct: 317 GLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVP 376

Query: 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           N  T+  +++A    G ++  +++   M   G
Sbjct: 377 NVITFNTMIDAYCKEGMMEEGFSLCSSMLDEG 408



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 40  NASEYNTVVTSLTS--QRRFFLLRDVYDDMMLDGVQP--TRDLFHSLIVGTMKGSRLQDT 95
           N+  Y+ V + L S  +     +  V+  ++LDG +P  T  +   L++  +K   L   
Sbjct: 90  NSKRYSKVRSFLDSFVKNEKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCA 149

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +    + K  GF   +   N L+S   K         +++EM K  +  N  T+   +N 
Sbjct: 150 YEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFING 209

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
              AG+L+     + DM A G   +   Y  L+  +  +
Sbjct: 210 LCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKR 248



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 4/147 (2%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N S YN ++  L  ++     +++ ++M   G++     ++ LI G  K  + ++     
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLL 471

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
           ++M   G  P+   YN L+   G C       A+ +   M+K   +PN  TY  L+    
Sbjct: 472 NEMFNLGLKPNHVTYNTLMD--GYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYC 529

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              +L+    ++ +M   G   ++  Y
Sbjct: 530 KINKLEAANGLLNEMLEKGLNPNRTTY 556


>gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Cucumis sativus]
          Length = 708

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 7/186 (3%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  ++  A+N   YNT++ + +   +      V+ +M   GV+PT   F+ L+    +  
Sbjct: 354 EMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRM 413

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN-SDQAIRIFEEMKKYEVKPNGQTY 149
           + +       +MK  G  P+V  Y  LIS  G+ K  SD A   F  MKK  ++P   +Y
Sbjct: 414 QPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSY 473

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT--KIIE 207
             L++A + +G  +  Y+   +M   G       Y  L+ A      RA DT +  KI +
Sbjct: 474 TALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDA----FRRAGDTVSLMKIWK 529

Query: 208 LVEQSK 213
           L+ + K
Sbjct: 530 LMIREK 535



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 65/147 (44%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           D ++ M   GV+ + ++  +LI               + +M+  G   +V +YN ++   
Sbjct: 315 DYFEKMNQKGVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYNTIMDAF 374

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
            K    ++A  +F EMK   VKP   ++  L+NA +   Q + V  ++ +M   G   + 
Sbjct: 375 SKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNV 434

Query: 182 FCYAGLITAHTNKIPRADDTATKIIEL 208
             Y  LI+A+  +   +D  A   + +
Sbjct: 435 KSYTCLISAYGRQKKMSDMAADAFLRM 461


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++  L  QRR     D++++    G  PT   ++++I G  K  R+++     D M 
Sbjct: 33  YGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMA 92

Query: 104 AN-GFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
            + GF P V  Y+ LI   G C++   D+  ++ EEM      PN  TY  L+NA    G
Sbjct: 93  IHFGFRPTVVTYSTLID--GLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQG 150

Query: 161 QLDPVYAIVRDMTAAGA 177
           +    ++++  M A G 
Sbjct: 151 RSKEAFSLLEQMAANGC 167



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 136/359 (37%), Gaps = 47/359 (13%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRR----FFLLRD----------------------- 62
           EE A R  A NA  YNT+V +L  Q R    F LL                         
Sbjct: 125 EEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKE 184

Query: 63  --------VYDDMML--DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112
                   V D+M +   G+ P    F+S++ G  K  R+ D      +    G  P+V 
Sbjct: 185 GEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVV 244

Query: 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y+ LI    K    D+A+++  +M +   + N  TY  +++     G+++    ++R M
Sbjct: 245 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 304

Query: 173 TAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGV 232
             AG   D   Y  LI     +  R  +    + E++E     S V  +         G+
Sbjct: 305 RDAGCLPDAVTYNTLIDGFFKR-QRLREAVGLLREMLEAGFHPSVVTYT-----TLCHGL 358

Query: 233 SKEELYN--LPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP 290
            +   ++  +   +Y+  R G     +T   +    C   +  +A+    +M + +  +P
Sbjct: 359 CRSGRFDEAVEILDYMAAR-GCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAP 417

Query: 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGMQL 348
            V      I     +G ID  ++  E  I + + P    ++ L+ G    G    G++L
Sbjct: 418 HVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLEL 476



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 8/196 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T+   L    RF    ++ D M   G  P    + S++ G  K  R+ +   + ++M 
Sbjct: 351 YTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMA 410

Query: 104 ANGFL-PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
            +  + P V  Y+ LI    K    D+A    E M +    P+  T+  L+N    AG++
Sbjct: 411 RDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRI 470

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ--SKGWSSVET 220
           D    + R M   G   D   YA L+    +++ RA     +  +L +Q  S G S   +
Sbjct: 471 DTGLELFRGMAERGCVPDMVTYATLV----DRLCRA-SRVDEAFDLFQQMRSDGLSPDRS 525

Query: 221 SGNNAENEMMGVSKEE 236
           +     + ++ V+++E
Sbjct: 526 TRRTMIHGLLEVNRDE 541



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT++  L    R      +YDDM +  G +PT   + +LI G  +   +       ++M
Sbjct: 68  YNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEM 127

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
              G  P+   YN L++       S +A  + E+M      P   T+  ++      G++
Sbjct: 128 AGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEI 187

Query: 163 DPVYAIVRDMTAAGAGL 179
           +  + +V +M    +GL
Sbjct: 188 EAAFRVVDEMFMIESGL 204



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 1/145 (0%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           ++  L   R+      ++  M+   + P    + +LI G  K  R+++ +   ++ +A G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-KYEVKPNGQTYVCLLNACAAAGQLDPV 165
             P V  YN +I    KC   + A+ ++++M   +  +P   TY  L++      ++D  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 166 YAIVRDMTAAGAGLDKFCYAGLITA 190
             ++ +M   G   +   Y  L+ A
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNA 145



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 15/261 (5%)

Query: 82  LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
           +I G  K  ++        QM      PDV  Y  LI   GK +   +A  +FEE +   
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA--D 199
             P   TY  +++     G+++    +  DM         F +   +  ++  I     D
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAI------HFGFRPTVVTYSTLIDGLCRD 114

Query: 200 DTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRGGFLSRL 256
               K  +L+E+   +G +    + N   N ++G  + +E ++L      +   G    L
Sbjct: 115 HEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAAN---GCPPEL 171

Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRK-SPDVYIVMQNIRCYLHSGDIDNGHKVF 315
           +T   +    C E +   A   + EM   +   SPDV      +        I + H VF
Sbjct: 172 ITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 231

Query: 316 EDYICSEKFPPAELYATLVEG 336
           +  +     P    Y+TL++G
Sbjct: 232 KRALERGCRPNVVTYSTLIDG 252


>gi|399107194|gb|AFP20361.1| At1g03560-like protein, partial [Capsella grandiflora]
 gi|399107216|gb|AFP20372.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 22  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 81

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+      +  N   Y  L++    AG+
Sbjct: 82  DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 139

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 140 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 190


>gi|293334437|ref|NP_001169582.1| uncharacterized protein LOC100383463 [Zea mays]
 gi|224030203|gb|ACN34177.1| unknown [Zea mays]
 gi|413935329|gb|AFW69880.1| hypothetical protein ZEAMMB73_684747 [Zea mays]
          Length = 622

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 24/317 (7%)

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL D     +Q    G  P+V  Y  +I  C   + +D+A+ +F+ M    V+PN  TY 
Sbjct: 175 RLFDGMRAGEQGGEAGAFPNVVAYTTMIRACCASRLADEALSLFKMMLADGVRPNRITYN 234

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF-----CYAGLITAHT--NKIPRADDTAT 203
            ++     AG+++ V  +         G+D F      +  L+ AH    +I  A     
Sbjct: 235 TMVQGFCQAGRMELVKEVF--------GMDSFKPDTCTFNTLMAAHCREGRIQDAKKVFD 286

Query: 204 KIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA 263
           +++EL  +    S    +    EN   G ++E + +L   E + +RGG +  L+  Y+  
Sbjct: 287 QMMELRVRRDSASYSIVTRALCENGEFGRAEELVDSLLEKEVLKKRGGCVP-LIASYNPV 345

Query: 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
           F    E    +    L   L   R   D       I  +   GD + G+++    +  + 
Sbjct: 346 FKYLCENGKAKKARLLFGQLLDIRSKVDFLAFKTLILGHCKEGDFEEGYELVLSMLKRDL 405

Query: 324 FPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGS-DLLLVAAGEKSG 381
            P +E Y  +++G M     KG M+ A + L  M   N  L P   +   +L+   +K G
Sbjct: 406 MPDSECYIAVIDGFM----QKGRMKSAWEALHRM--LNSGLRPSTSTFHSVLLGLLKKDG 459

Query: 382 GYTTANYIWDLMQARKI 398
               A  + ++M  RKI
Sbjct: 460 CAKEAADLIEIMLERKI 476



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
           A  RR F      E+        N   Y T++ +  + R       ++  M+ DGV+P R
Sbjct: 171 ATARRLFDGMRAGEQGGEAGAFPNVVAYTTMIRACCASRLADEALSLFKMMLADGVRPNR 230

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             +++++ G  +  R++     ++    + F PD   +N L++   +      A ++F++
Sbjct: 231 ITYNTMVQGFCQAGRME---LVKEVFGMDSFKPDTCTFNTLMAAHCREGRIQDAKKVFDQ 287

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQL 162
           M +  V+ +  +Y  +  A    G+ 
Sbjct: 288 MMELRVRRDSASYSIVTRALCENGEF 313


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NY      YN ++ SL   +++ L+  VY+ M+ DG  P    ++ ++    +  +    
Sbjct: 294 NYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRL 353

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
           +   D+M  +GF PD+  YN L+           A+ +   M++  V+P    +  L++ 
Sbjct: 354 YRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDG 413

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
            + AG+L+     + +    G   D  CY  +IT + +  ++ +A++   ++ E
Sbjct: 414 LSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTE 467



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 2/180 (1%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  +  ++ +   YN ++  L +  +     ++ + M   GV+P    F +LI G  + 
Sbjct: 358 DEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRA 417

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            +L+   +F D+    G  PDV  Y  +I+        ++A  +F+EM +    PN  TY
Sbjct: 418 GKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTY 477

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
             ++     AG+     A++++M + G   +   Y+ L+    N  K+  A +    ++E
Sbjct: 478 NSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVE 537



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           + T++  L+   +    +   D+ +  G  P    +  +I G + G  L+       +M 
Sbjct: 407 FTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMT 466

Query: 104 ANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
             G LP+V  YN +I    + GK K   +A  + +EM+     PN   Y  L+N    AG
Sbjct: 467 EKGQLPNVFTYNSMIRGFCMAGKFK---EACALLKEMESRGCNPNFVVYSTLVNNLKNAG 523

Query: 161 QLDPVYAIVRDMTAAG 176
           ++   + +V+DM   G
Sbjct: 524 KVLEAHEVVKDMVEKG 539



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 40/210 (19%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           +L+++   +K+    L  +FFV   G E     N+ + A+ Y+ ++        +  +  
Sbjct: 196 ILRTLSFDNKTRCAKLAYKFFVWCGGQE-----NFRHTANCYHLLMKIFAECGEYKAMCR 250

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD---------TFFFR-------------- 99
           + D+M+ DG   T   F+ LI    +    +D         TF +R              
Sbjct: 251 LIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLL 310

Query: 100 ------------DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                       +QM  +GF PDV  YN ++    +   +D+  R+ +EM K    P+  
Sbjct: 311 GVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLY 370

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           TY  LL+  A   +      ++  M   G 
Sbjct: 371 TYNILLHHLATGNKPLAALNLLNHMREVGV 400


>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
 gi|194705268|gb|ACF86718.1| unknown [Zea mays]
 gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
          Length = 504

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%)

Query: 36  NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
           NY    + +N ++ +L +  ++ L+  V++ M+L+G  P    ++ ++       +L   
Sbjct: 244 NYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKYMLGKLDQF 303

Query: 96  FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
               D+M  NG  PD+  YN L+ V GK      A+ +   M     +PN   +  L++ 
Sbjct: 304 HQLLDEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDG 363

Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
              AG L+       +M   G   D  CY  +I ++ 
Sbjct: 364 LGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYV 400



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G +P    F +LI G  +   L+   +F D+M   G  PDV  Y  +I+        ++A
Sbjct: 349 GCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEA 408

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            R F++M      PN  TY  ++    A G+ D  + +++DM + G   +   Y+ L+
Sbjct: 409 QRFFDDMLMRGQLPNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLV 466



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 53/137 (38%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   +  ++  L         R  +D+MM  G  P    +  +I   +     ++   F 
Sbjct: 353 NVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFF 412

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M   G LP+V  YN +I         D+A  + ++M  +   PN   Y  L+     A
Sbjct: 413 DDMLMRGQLPNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRLRNA 472

Query: 160 GQLDPVYAIVRDMTAAG 176
           G+      +++ MT  G
Sbjct: 473 GKDTQANNVIKYMTDKG 489


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 114/302 (37%), Gaps = 48/302 (15%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A   S YN  V +L    +     +V  +M     +P    F++LI G  K  RL +   
Sbjct: 51  APTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQ 110

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             D+M+ +GF  ++  YN LI+       S +A+ + + M      P+ QTY  +++   
Sbjct: 111 VLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT---TTPDTQTYNAIIHGFC 167

Query: 158 AAGQLDPVYAIVRDMTA-AGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKG 214
            +G++D  Y  + +M   AG   D F Y+ LI     ++ + +AD       EL+++  G
Sbjct: 168 KSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD-------ELLQEMIG 220

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
                 S       + G  K        A+ + R    LS +L       H CA      
Sbjct: 221 RKDCCASVVAFNTLVDGYCK--------AQDLDRARELLSSMLE------HGCA------ 260

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
                          PDV      I      GD+D G  + E  +     P    Y  LV
Sbjct: 261 ---------------PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLV 305

Query: 335 EG 336
            G
Sbjct: 306 TG 307



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   R++   +   +NT+V      +     R++   M+  G  P    + ++I G  + 
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +   F   ++M + G  PDV  Y  L++  G CK     +A R+ + M +    PN  
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVT--GLCKAGKMVEACRLVKRMLEDGCTPNAV 334

Query: 148 TYVCLLNACAAAGQLD 163
           TY  + +      +LD
Sbjct: 335 TYSLVFDGLCKIDKLD 350



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 118/318 (37%), Gaps = 16/318 (5%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             R+  +  G  P  ++YN+ +    K     +A+ + + MK    KP+  T+  L+   
Sbjct: 40  LLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGL 99

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             AG+LD    ++ +M  +G   +   Y  LI   +        +A +  E V   +G +
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS--------SAGRSGEAVLVMQGMT 151

Query: 217 SV-ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
           +  +T   NA       S E        E + +R G      T   +    C      +A
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKA 211

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            E L EM+ +      V      +  Y  + D+D   ++    +     P    Y+T+++
Sbjct: 212 DELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIID 271

Query: 336 G-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394
           G    G   KG  L    L  M SR     P + +  +LV    K+G    A  +   M 
Sbjct: 272 GLCRCGDVDKGFAL----LEKMVSRGC--KPDVVTYTVLVTGLCKAGKMVEACRLVKRML 325

Query: 395 ARKITPSLPAVEAYYNGL 412
               TP+       ++GL
Sbjct: 326 EDGCTPNAVTYSLVFDGL 343


>gi|255685746|gb|ACU28362.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 178

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 8   VFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVN--G 65

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 66  LCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDXAERLFEEMSEKGCTRD 125

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 126 SYCYNALIDAFT-KHGKVDE-ALALFKRMEEEEG 157


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +   YN ++  L ++ +F    ++Y++M   G+ P    ++S+I G  K SRL +     
Sbjct: 503 DVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMF 562

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D M + GF PDV  +  LI+   K       + +F EM +  +  N  TY  L++     
Sbjct: 563 DSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQV 622

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           G ++    I ++M ++G   D      ++T   +K
Sbjct: 623 GNINGALDIFQEMISSGVYPDTITIRNMLTGLWSK 657



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 123/316 (38%), Gaps = 43/316 (13%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK-GSRLQDTFFF 98
           N   + T++  L  + R      + D M+ DG+QP +  + +++ G  K G  +      
Sbjct: 176 NVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 235

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
           R   + +   P+V +Y+ +I    K      A  +F EM++  + PN  TY C++N   +
Sbjct: 236 RKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCS 295

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
           +G+      ++R+M       D   ++ LI A                 LV++ K + + 
Sbjct: 296 SGRWSEAQRLLREMFERKMSPDVVTFSVLINA-----------------LVKEGKFFEA- 337

Query: 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
                           EELYN    E + R  G +   +T Y+      ++   + A E 
Sbjct: 338 ----------------EELYN----EMLPR--GIIPNTIT-YNSMIDGFSKQNRLDAAER 374

Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG-A 337
           +  ++     SPDV      I  Y  +  +D+G K+  +            Y TL+ G  
Sbjct: 375 MFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFC 434

Query: 338 MFGYTPKGMQLAQDTL 353
             G     + L Q+ +
Sbjct: 435 QLGNLNAALDLLQEMI 450



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 110/318 (34%), Gaps = 34/318 (10%)

Query: 21  RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
           +FF       E   R    N   YN+++   + Q R      ++  M   G  P    F 
Sbjct: 333 KFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFS 392

Query: 81  SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
            LI G     R+ D      +M   G + +   Y  LI    +  N + A+ + +EM   
Sbjct: 393 ILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISS 452

Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT-NKI-PRA 198
            V PN  T   LL+     G+L     + + M  +   LD         +H  N + P  
Sbjct: 453 GVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLD--------ASHPFNDVEPDV 504

Query: 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
                 I  L+ + K   +                 EELY     E  HR  G +   +T
Sbjct: 505 QTYNILICGLINEGKFSEA-----------------EELYE----EMPHR--GLVPDTIT 541

Query: 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318
              V    C + +  +A +    M  K   SPDV      I  Y   G + +G +VF + 
Sbjct: 542 YNSVIDGLCKQSRLDEATQMFDSMGSKGF-SPDVVTFTTLINGYCKVGRVGDGLEVFCEM 600

Query: 319 ICSEKFPPAELYATLVEG 336
                   A  Y TL+ G
Sbjct: 601 GRRGIVANAITYRTLIHG 618



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 49/119 (41%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE   R    +   YN+V+  L  Q R      ++D M   G  P    F +LI G  K 
Sbjct: 528 EEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKV 587

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
            R+ D      +M   G + +   Y  LI    +  N + A+ IF+EM    V P+  T
Sbjct: 588 GRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTIT 646



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFF----LLRDVYDDMMLDGVQPTRDLFHSLIVGT 86
           E   +  + N   YN ++    S  R+     LLR++++  M     P    F  LI   
Sbjct: 273 EMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKM----SPDVVTFSVLINAL 328

Query: 87  MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
           +K  +  +     ++M   G +P+   YN +I    K    D A R+F  M      P+ 
Sbjct: 329 VKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDV 388

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            T+  L++    A ++D    ++ +M+  G   +   Y  LI
Sbjct: 389 ITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLI 430


>gi|299473414|emb|CBN77812.2| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 1130

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 2/171 (1%)

Query: 42  SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
           S + TV+T L       L   +YDDM + G+ P+ D ++ L+    K       F   D+
Sbjct: 685 SSFQTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWDRAFKILDE 744

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           M      PD+  +   IS CGK     +A+ +   M+   ++PN Q +  +++    AG+
Sbjct: 745 MSELAIKPDIVSFGAAISACGKGLEWRRALALLVRMQHDGIEPNLQCFNNVIHGLGLAGE 804

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
                A++  +   G   D + Y  +  A+ +      D A  +++ +E++
Sbjct: 805 WKRAEAMMEVIHKTGLVPDSYTYNSMAMAYASA--GESDMALDVLDTMEKN 853



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 2/170 (1%)

Query: 22   FFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
            F +  +  +E  +R        Y T + +        +  +++  M + GV+P    + +
Sbjct: 875  FSIMRSLMDEMEQRGIPMTVHHYTTCIDAANRMEGTGMGWELWRQMGVKGVEPNNYAYSA 934

Query: 82   LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
            +I        ++      ++MK  G   DV  Y   I  CG   +   A+ + EEM K  
Sbjct: 935  IITTAAIDRDVRTALRLLEEMKTKGISIDVVSYTSAICACGP--DWLLALDVLEEMDKDG 992

Query: 142  VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            V PN  ++   + AC    +   V  +   M AAG   D   Y   I AH
Sbjct: 993  VAPNLLSFTAAMGACFKGEEPREVINVFNRMKAAGVAPDLRAYNLAIMAH 1042



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 53/124 (42%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M  DG++P    F+++I G       +      + +   G +PD   YN +         
Sbjct: 780 MQHDGIEPNLQCFNNVIHGLGLAGEWKRAEAMMEVIHKTGLVPDSYTYNSMAMAYASAGE 839

Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
           SD A+ + + M+K  V+P+  TY  L+ AC   G    + +++ +M   G  +    Y  
Sbjct: 840 SDMALDVLDTMEKNGVQPDKVTYGTLMKACDGEGAFSIMRSLMDEMEQRGIPMTVHHYTT 899

Query: 187 LITA 190
            I A
Sbjct: 900 CIDA 903


>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
 gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
 gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
 gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 463

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++    +  +      VY  M  +GV+P +  +++LI G  K  R+++   +   M 
Sbjct: 268 YNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMV 327

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQ--AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             G+ PD A Y  L++  G C+  +   A+ + EEM+     PN  TY  LL+    A  
Sbjct: 328 DAGYEPDTATYTSLMN--GMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARL 385

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           +D    +   M ++G  L+   YA L+
Sbjct: 386 MDKGMELYEMMKSSGVKLESNGYATLV 412



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 1/166 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMK 88
           +E   ++   +   YN ++  L   +   ++ +  D+M  D  V+P    F  LI     
Sbjct: 183 KELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCN 242

Query: 89  GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              L++  +   ++   GF PD  +YN ++          +A+ ++++MK+  V+P+  T
Sbjct: 243 SKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQIT 302

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
           Y  L+   + AG+++     ++ M  AG   D   Y  L+     K
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRK 348



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 2/142 (1%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G +P   L+++++ G    S+  +      +MK  G  PD   YN LI    K    ++A
Sbjct: 260 GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEA 319

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
               + M     +P+  TY  L+N     G+     +++ +M A G   +   Y  L+  
Sbjct: 320 RMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLL-- 377

Query: 191 HTNKIPRADDTATKIIELVEQS 212
           H     R  D   ++ E+++ S
Sbjct: 378 HGLCKARLMDKGMELYEMMKSS 399


>gi|414589415|tpg|DAA39986.1| TPA: empty pericarp 2 [Zea mays]
          Length = 455

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 22  FFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHS 81
           FF  S    + + + Y    S +  V + + +Q+       ++D+M+  GVQP    +++
Sbjct: 207 FFRESPFQFDLSAKTYTILISGWAVVASPVKAQK-------LFDEMIERGVQPDVPAYNA 259

Query: 82  LIVGTMKGSRLQDTFFFRDQMK----ANGFLPDVAVYN-YLISVCGKCKNSDQAIRIFEE 136
           LI    +G    D    ++Q+K    + G  PD A Y  +L S C   K++  A+R+ + 
Sbjct: 260 LIDALCRGG---DVALAQEQLKDMQRSRGLAPDAATYGPFLRSACAS-KDARAALRVLDR 315

Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           M+   + PN  TY  ++      G++D  Y I+ +M   G   D + Y  L+  H
Sbjct: 316 MRARSLTPNVFTYNAVIRLLCELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTH 370


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           +++ +M    + P    + SLI G  K  R+   +   D+M+  G   DV  Y+ LI   
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLID-- 417

Query: 122 GKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179
           G CKN   D+AI +F +MK  E++PN  T+  LL+     G+L     + +D+   G  L
Sbjct: 418 GLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHL 477

Query: 180 DKFCYAGLITAHTNK 194
           + + Y  +I  H  +
Sbjct: 478 NVYTYNVMINGHCKQ 492



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   +    N   YN +V +L  + +    + V   M+   V+P    + +L+ G     
Sbjct: 259 EMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVY 318

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
            ++      + M   G  PDV  Y  LI+  G CKN   D+A+ +F+EM +  + P   T
Sbjct: 319 EVKKAQHVFNAMSLMGVTPDVHTYTILIN--GFCKNKMVDEALNLFKEMHQKNMVPGIVT 376

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           Y  L++    +G++  V+ ++ +M   G   D   Y+ LI
Sbjct: 377 YSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLI 416



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 69  LDG--VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI---SVCGK 123
           +DG   +P   +++++I    K   + + +    +M   G   DV  YN LI    + GK
Sbjct: 190 IDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGK 249

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
            K   +AI +  EM    + PN  TY  L++A    G++    +++  M  A    D   
Sbjct: 250 LK---EAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306

Query: 184 YAGLITAH 191
           Y+ L+  +
Sbjct: 307 YSTLMDGY 314



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 6/179 (3%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E  ++N       Y++++  L    R   + D+ D+M   G       + SLI G  K 
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 422

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
             L       ++MK     P++  +  L+   G CK      A  +F+++       N  
Sbjct: 423 GHLDRAIALFNKMKDQEIRPNIFTFTILLD--GLCKGGRLKDAQEVFQDLLTKGYHLNVY 480

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
           TY  ++N     G L+    ++  M   G   + F +  +I A   K    +D A K++
Sbjct: 481 TYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKK--DENDKAEKLL 537



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 63/157 (40%)

Query: 34  RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
           +R Y  +    NT++  L  + +       +D ++  G Q  +  + +LI G  K    +
Sbjct: 122 KRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTR 181

Query: 94  DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
               F  ++      PDV +YN +I    K +   +A  +F EM    +  +  TY  L+
Sbjct: 182 AAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLI 241

Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
                 G+L     ++ +M       + + Y  L+ A
Sbjct: 242 YGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 60/145 (41%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++ ++   +       ++ +M + G+      +++LI G     +L++     ++M 
Sbjct: 202 YNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMV 261

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
                P+V  YN L+    K     +A  +   M K  VKP+  TY  L++      ++ 
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +   M+  G   D   Y  LI
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILI 346



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   R    +   Y++++  L           +++ M    ++P    F  L+ G  KG
Sbjct: 398 DEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKG 457

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
            RL+D       +   G+  +V  YN +I+  G CK    ++A+ +  +M+     PN  
Sbjct: 458 GRLKDAQEVFQDLLTKGYHLNVYTYNVMIN--GHCKQGLLEEALTMLSKMEDNGCIPNAF 515

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           T+  ++ A     + D    ++R M A G
Sbjct: 516 TFETIIIALFKKDENDKAEKLLRQMIARG 544


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 114/302 (37%), Gaps = 48/302 (15%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A   S YN  V +L    +     +V  +M     +P    F++LI G  K  RL +   
Sbjct: 51  APTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQ 110

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
             D+M+ +GF  ++  YN LI+       S +A+ + + M      P+ QTY  +++   
Sbjct: 111 VLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMT---TTPDTQTYNAIIHGFC 167

Query: 158 AAGQLDPVYAIVRDMTA-AGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQSKG 214
            +G++D  Y  + +M   AG   D F Y+ LI     ++ + +AD       EL+++  G
Sbjct: 168 KSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD-------ELLQEMIG 220

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274
                 S       + G  K        A+ + R    LS +L       H CA      
Sbjct: 221 RKDCCASVVAFNTLVDGYCK--------AQDLDRARELLSSMLE------HGCA------ 260

Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
                          PDV      I      GD+D G  + E  +     P    Y  LV
Sbjct: 261 ---------------PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLV 305

Query: 335 EG 336
            G
Sbjct: 306 TG 307



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   R++   +   +NT+V      +     R++   M+  G  P    + ++I G  + 
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             +   F   ++M + G  PDV  Y  L++  G CK     +A R+ + M +    PN  
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVT--GLCKAGKMVEACRLVKRMLEDGCTPNAV 334

Query: 148 TYVCLLNACAAAGQLD 163
           TY  + +      +LD
Sbjct: 335 TYSLVFDGLCKIDKLD 350



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 118/318 (37%), Gaps = 16/318 (5%)

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
             R+  +  G  P  ++YN+ +    K     +A+ + + MK    KP+  T+  L+   
Sbjct: 40  LLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGL 99

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             AG+LD    ++ +M  +G   +   Y  LI   +        +A +  E V   +G +
Sbjct: 100 CKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLS--------SAGRSGEAVLVMQGMT 151

Query: 217 SV-ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
           +  +T   NA       S E        E + +R G      T   +    C      +A
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKA 211

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
            E L EM+ +      V      +  Y  + D+D   ++    +     P    Y+T+++
Sbjct: 212 DELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIID 271

Query: 336 G-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394
           G    G   KG  L    L  M SR     P + +  +LV    K+G    A  +   M 
Sbjct: 272 GLCRCGDVDKGFAL----LEKMVSRGC--KPDVVTYTVLVTGLCKAGKMVEACRLVKRML 325

Query: 395 ARKITPSLPAVEAYYNGL 412
               TP+       ++GL
Sbjct: 326 EDGCTPNAVTYSLVFDGL 343


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 1/169 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  +R         NT++  L    R    R+V D M+  G  P    +++L+ G  + 
Sbjct: 531 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 590

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            + +        M A G  P+V  Y  L+S   K     +A  +F +MK     PN  TY
Sbjct: 591 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 650

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA 198
             L+    +AGQ+D    +  +M  AG   D   Y G + A   K  R+
Sbjct: 651 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY-GTLAAELCKSGRS 698



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 143/333 (42%), Gaps = 48/333 (14%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y +++  L     F   R+++ DM   G  P+   ++ +I  + K   L++      +M 
Sbjct: 361 YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI 420

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTY-VCLLNACAAA- 159
            +G +PDV  YN ++   G CK+S  ++A+ +F EM++    PN +++   +L  C  + 
Sbjct: 421 EDGHVPDVVTYNTVMD--GLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 478

Query: 160 -------GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE----- 207
                  G+LD  + +++ MT  G   D   Y+ LI+   + I R DD A  ++E     
Sbjct: 479 IDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS-IARVDD-ARHLLEDMVKR 536

Query: 208 -----LVEQSKGWSSVETSGNNAE-----NEMMGVSKE-ELYNLPTAEYVHRRGG----- 251
                +V Q+     +  +G   E     + M+   +  ++    T  + H R G     
Sbjct: 537 QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERA 596

Query: 252 ------FLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIR 300
                  ++R L    V + A     C   +  +A     +M K    +P+++     I 
Sbjct: 597 RELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSSGCAPNLFTYTALIL 655

Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
            +  +G +D G K+F + +C+   P   +Y TL
Sbjct: 656 GFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 688



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 141/370 (38%), Gaps = 24/370 (6%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN V+  L    R      +++ M    V P    +  LI G  K  +L D      ++ 
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G  P    Y  LI       + D A  +F +M +    P+  TY  +++A    G L+
Sbjct: 351 HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLE 410

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
               +++ M   G   D   Y  ++     K  R ++      E+  +  G +    S N
Sbjct: 411 EACDLIKKMIEDGHVPDVVTYNTVMDGLC-KSSRVEEALLLFNEM--ERLGCTPNRRSHN 467

Query: 224 NAENEMMGVSKEELYN-------LPTAEYVHRR---GGFLSRLLTVYHVAFHACAELKDV 273
                ++G+ ++   +       L  A  + +R    G +  ++T Y         +  V
Sbjct: 468 TI---ILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVT-YSTLISGLCSIARV 523

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
                LLE + K +  P V      I     +G I    +V +  + S + P    Y TL
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 583

Query: 334 VEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
           V G    G T +    A++ L +M +R   L+P + +   LV+   K+     A  ++  
Sbjct: 584 VHGHCRAGQTER----ARELLSDMVARG--LAPNVVTYTALVSGLCKANRLPEACGVFAQ 637

Query: 393 MQARKITPSL 402
           M++    P+L
Sbjct: 638 MKSSGCAPNL 647



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT+V       +    R++  DM+  G+ P    + +L+ G  K +RL +      QMK
Sbjct: 580 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 639

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           ++G  P++  Y  LI         D  +++F EM    + P+   Y  L      +G+  
Sbjct: 640 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 699

Query: 164 PVYAIVRD 171
               I+R+
Sbjct: 700 RALEILRE 707



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 27  AGAEEYAR--------RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
           AG  E AR        R  A N   Y  +V+ L    R      V+  M   G  P    
Sbjct: 590 AGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFT 649

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           + +LI+G     ++        +M   G  PD  VY  L +   K   S +A+ I  E +
Sbjct: 650 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 709

Query: 139 KY--EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           +         + Y   ++    AG+++     VRDM   G
Sbjct: 710 ESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGG 749



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 121/344 (35%), Gaps = 22/344 (6%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++ +I+G  +  R+ +     ++M      PD   Y  LI    K    + A  +F+++ 
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IP 196
              V P+   Y  L++    A   D    +  DM   G       Y  +I A   +  + 
Sbjct: 351 HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLE 410

Query: 197 RADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
            A D   K+IE      G      + N   + +   S+ E   L   E    R G     
Sbjct: 411 EACDLIKKMIE-----DGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEM--ERLGCTPNR 463

Query: 257 LTVYHVAFHACAELKDVQAME--------TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
            +   +    C + K  QA +         LL+ +  D   PDV      I        +
Sbjct: 464 RSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 523

Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG 368
           D+   + ED +  +  P      TL+ G       K  +   D +V+        SP + 
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ-----SPDVV 578

Query: 369 SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           +   LV    ++G    A  +   M AR + P++    A  +GL
Sbjct: 579 TYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 622



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 115 NYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
            Y I + G C+N   D+A+++FE+M +  V P+  +Y  L++  A AG+L+    + + +
Sbjct: 290 GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL 349

Query: 173 TAAGAGLDKFCYAGLI 188
             +G       Y  LI
Sbjct: 350 LHSGVTPSTVAYTSLI 365


>gi|357113402|ref|XP_003558492.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Brachypodium distachyon]
          Length = 688

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE        N   YNTV+ ++    R ++++ ++ +M+   VQP R  +  L+    + 
Sbjct: 290 EEMKAVGVKPNLVVYNTVLDAMGRAMRPWVVKTIHREMVSQQVQPNRATYCCLLQAYTRA 349

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY---EVKPNG 146
              +D       MK      DV +YN L+S+C      D+A  IF +MK +     KP+ 
Sbjct: 350 RYGEDAMVVYRMMKDEVMDIDVVLYNMLLSMCADIGYIDEAEEIFRDMKAHTDTRFKPDS 409

Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-----TAHTNKIPRA 198
            TY  ++   +  G +     I+++M  AG   + F    LI       HT+ + R+
Sbjct: 410 WTYSSMVTLYSCTGNVLGAEGILKEMAEAGFKPNIFILTSLIRCYGKAGHTDDVVRS 466



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 39  NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
           N    YN V+ +L  +RR+     ++D+M+ DGVQP    F ++I         +    +
Sbjct: 159 NKGILYNVVLKALRKRRRWSDTEALWDEMLRDGVQPDNTTFSTVISCARACGLPRKAVEW 218

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR-------------------------- 132
            ++M   G  PD+  Y+ +I   G+  ++D A+R                          
Sbjct: 219 FEKMPGLGCSPDMLTYSAVIDAYGRAGDADMALRLYDRARAEKCQLDPVICATVIKVHST 278

Query: 133 ---------IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
                    +FEEMK   VKPN   Y  +L+A   A +   V  I R+M +     ++  
Sbjct: 279 SGNFAGALNVFEEMKAVGVKPNLVVYNTVLDAMGRAMRPWVVKTIHREMVSQQVQPNRAT 338

Query: 184 YAGLITAHT 192
           Y  L+ A+T
Sbjct: 339 YCCLLQAYT 347


>gi|326524037|dbj|BAJ97029.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 599

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 5/153 (3%)

Query: 61  RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           + V   M   GV P   +F++L+ G +   R +D F    +M+     P+   Y  L+  
Sbjct: 212 KHVLARMKAAGVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRDCPPNAVSYTTLMQG 271

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            G     D+ +R+F EM++    P+  TY  L+ A   AG+L   Y  +  M+  G  +D
Sbjct: 272 LGSKGRVDEVMRVFVEMRRKGCTPDSVTYGTLVTAFCKAGRLSQGYEFLDSMSRDGLRVD 331

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
              Y G   AH       +    + +EL+E+ +
Sbjct: 332 PGVYLGFFVAHEK-----EQQLEECLELMERMR 359



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 66  DMMLDGVQPTRDL----FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
           + +++ +QP   L    + +L+ G  + ++L +      +MKA G  PDV V+N L++  
Sbjct: 178 ERLVEELQPRLPLSLRHYTALLYGWCRLAKLDEAKHVLARMKAAGVAPDVVVFNTLLAGF 237

Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
                 + A  +  EM++ +  PN  +Y  L+    + G++D V  +  +M   G   D 
Sbjct: 238 VADGRFEDAFELAREMERRDCPPNAVSYTTLMQGLGSKGRVDEVMRVFVEMRRKGCTPDS 297

Query: 182 FCYAGLITA 190
             Y  L+TA
Sbjct: 298 VTYGTLVTA 306



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 62/146 (42%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+    ++  Y T+VT+     R     +  D M  DG++    ++    V   K  
Sbjct: 287 EMRRKGCTPDSVTYGTLVTAFCKAGRLSQGYEFLDSMSRDGLRVDPGVYLGFFVAHEKEQ 346

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           +L++     ++M+     PD+ +YN +I +  K   + QAI ++ E +   + P   T+ 
Sbjct: 347 QLEECLELMERMRECRCPPDLNIYNVVIRLSCKLGETKQAIALWNETENSGLSPGVDTFA 406

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
            ++N     G L       +DM   G
Sbjct: 407 IMVNGLVGQGSLVDACNYFKDMVGRG 432


>gi|224576645|gb|ACN56996.1| At1g03560-like protein [Capsella grandiflora]
          Length = 196

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y  +++  G
Sbjct: 9   VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYXVVVN--G 66

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +      N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 67  LCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRD 126

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+  T + + +E+ +G
Sbjct: 127 SYCYNALIDALT-KHGKVDEAMT-LFKRMEEEEG 158


>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 777

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 2/168 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ S+   +R +  + +Y D++ +G  P    + +L+    +     D      +MK
Sbjct: 393 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 452

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTYVCLLNACAAAGQL 162
             G    V +YN L+S+C   ++ D+A  IF++MK  E   P+  T+  L+   A +G++
Sbjct: 453 EKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRV 512

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               A +  +  AG     F    +I  +  K  + DD      +++E
Sbjct: 513 SKAEAALLQIREAGFEPTLFVLTSVIQCY-GKAKQVDDVVRTFDQVLE 559



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++Y++M   GV+P   +++ LI    +  R  Q    ++D +  NGF P+ + Y  L+  
Sbjct: 376 NIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKD-LITNGFTPNWSTYAALVRA 434

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM-TAAGAGL 179
            G+ +  D A+ I+ EMK+  +      Y  LL+ CA    +D  + I +DM        
Sbjct: 435 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDP 494

Query: 180 DKFCYAGLIT--AHTNKIPRADDTATKIIE 207
           D + ++ LIT  A + ++ +A+    +I E
Sbjct: 495 DSWTFSSLITVYACSGRVSKAEAALLQIRE 524



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 15/261 (5%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M   G +P      ++I    +   +       D+ +   +  D   ++ LI + G 
Sbjct: 308 FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGV 367

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N D  + I+EEMK   VKPN   Y  L+++   A +      I +D+   G   +   
Sbjct: 368 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 427

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-----AENEMMGVSKEELY 238
           YA L+ A+     R  D A  I   +++ KG S      N      A+N  +  + E   
Sbjct: 428 YAALVRAYGRA--RYGDDALAIYREMKE-KGLSLTVILYNTLLSMCADNRHVDEAFEIFQ 484

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
           ++   E         S L+TVY     AC+    V   E  L  +++    P ++++   
Sbjct: 485 DMKNCETCDPDSWTFSSLITVY-----ACS--GRVSKAEAALLQIREAGFEPTLFVLTSV 537

Query: 299 IRCYLHSGDIDNGHKVFEDYI 319
           I+CY  +  +D+  + F+  +
Sbjct: 538 IQCYGKAKQVDDVVRTFDQVL 558



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
           YNT+++     R      +++ DM   +   P    F SLI       R+        Q+
Sbjct: 463 YNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAEAALLQI 522

Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
           +  GF P + V   +I   GK K  D  +R F+++ +  + P+ +   CLLN
Sbjct: 523 REAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLN 574



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 68  MLDGVQPTRD-LFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +L+ ++P+R+ + +++ +   + S+ L+ +    D+M   G  PD A +  +IS   +  
Sbjct: 240 LLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNG 299

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+  FE+M  +  +P+  T   +++A   AG +D   ++          +D   ++
Sbjct: 300 VPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFS 359

Query: 186 GLI 188
            LI
Sbjct: 360 TLI 362


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic; AltName: Full=Protein PROTON GRADIENT
            REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 1/162 (0%)

Query: 30   EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMK 88
            +E +      N   +N V++ L          D+Y D+M D    PT   +  LI G  K
Sbjct: 844  KEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSK 903

Query: 89   GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
              RL +     + M   G  P+ A+YN LI+  GK   +D A  +F+ M K  V+P+ +T
Sbjct: 904  SGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963

Query: 149  YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
            Y  L++     G++D      +++  +G   D  CY  +I  
Sbjct: 964  YSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 11/187 (5%)

Query: 37  YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
           +  NA  YN ++  L   R      +VY  M+L+G +P+   + SL+VG  K   +    
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVM 243

Query: 97  FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
               +M+  G  P+V  +   I V G+    ++A  I + M      P+  TY  L++A 
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303

Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
             A +LD    +   M       D+  Y  L+   ++   R  D+  +          WS
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN--RDLDSVKQF---------WS 352

Query: 217 SVETSGN 223
            +E  G+
Sbjct: 353 EMEKDGH 359



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRL---QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
           GVQP    ++ LI G ++   +   QD F    Q+K+ G +PDVA YN+L+   GK    
Sbjct: 780 GVQPKLPTYNLLIGGLLEADMIEIAQDVFL---QVKSTGCIPDVATYNFLLDAYGKSGKI 836

Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
           D+   +++EM  +E + N  T+  +++    AG +D    +  D+ +
Sbjct: 837 DELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 1/155 (0%)

Query: 35   RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
            R+++  A  Y  ++  L+   R +  + +++ M+  G +P   +++ LI G  K      
Sbjct: 885  RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADA 944

Query: 95   TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
                  +M   G  PD+  Y+ L+         D+ +  F+E+K+  + P+   Y  ++N
Sbjct: 945  ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIIN 1004

Query: 155  ACAAAGQLDPVYAIVRDM-TAAGAGLDKFCYAGLI 188
                + +L+    +  +M T+ G   D + Y  LI
Sbjct: 1005 GLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 64   YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-GFLPDVAVYNYLISVCG 122
            + ++   G+ P    ++ +I G  K  RL++     ++MK + G  PD+  YN LI   G
Sbjct: 984  FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLG 1043

Query: 123  KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
                 ++A +I+ E+++  ++PN  T+  L+   + +G+ +  YA+ + M   G
Sbjct: 1044 IAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1097



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 1/181 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  +  +  +   +  +V +L     F    D  D M   G+ P    +++LI G ++  
Sbjct: 353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVH 412

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           RL D       M++ G  P    Y   I   GK  +S  A+  FE+MK   + PN     
Sbjct: 413 RLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACN 472

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
             L + A AG+      I   +   G   D   Y  ++  ++ K+   D+    + E++E
Sbjct: 473 ASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS-KVGEIDEAIKLLSEMME 531

Query: 211 Q 211
            
Sbjct: 532 N 532



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y T++   +  R    ++  + +M  DG  P    F  L+    K     + F   D M+
Sbjct: 331 YITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR 390

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G LP++  YN LI    +    D A+ +F  M+   VKP   TY+  ++    +G  D
Sbjct: 391 DQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG--D 448

Query: 164 PVYAI 168
            V A+
Sbjct: 449 SVSAL 453



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 114/301 (37%), Gaps = 22/301 (7%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y  ++ +L + R+    ++V++ M     +P R  + +L+        L     F  +M+
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEME 355

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
            +G +PDV  +  L+    K  N  +A    + M+   + PN  TY  L+       +LD
Sbjct: 356 KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLD 415

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH------TNKIPRADDTATKII--ELVEQSKGW 215
               +  +M + G     + Y   I  +       + +   +   TK I   +V  +   
Sbjct: 416 DALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 475

Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
            S+  +G + E      +K+  Y L     V             Y++     +++ ++  
Sbjct: 476 YSLAKAGRDRE------AKQIFYGLKDIGLVPDS--------VTYNMMMKCYSKVGEIDE 521

Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
              LL  + ++   PDV +V   I     +  +D   K+F      +  P    Y TL+ 
Sbjct: 522 AIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLA 581

Query: 336 G 336
           G
Sbjct: 582 G 582



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%)

Query: 66  DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +MM +G +P   + +SLI    K  R+ + +    +MK     P V  YN L++  GK  
Sbjct: 528 EMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG 587

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +AI +FE M +    PN  T+  L +      ++     ++  M   G   D F Y 
Sbjct: 588 KIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYN 647

Query: 186 GLI 188
            +I
Sbjct: 648 TII 650



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FF 98
           + + YN ++ +     +   L ++Y +M     +      + +I G +K   + D    +
Sbjct: 819 DVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLY 878

Query: 99  RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
            D M    F P    Y  LI    K     +A ++FE M  Y  +PN   Y  L+N    
Sbjct: 879 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938

Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           AG+ D   A+ + M   G   D   Y+ L+
Sbjct: 939 AGEADAACALFKRMVKEGVRPDLKTYSVLV 968



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 14/155 (9%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRR-------FFLLRDVYDDMMLDGVQPTRDLFHSL 82
           E+   +  A N    N  + SL    R       F+ L+D+       G+ P    ++ +
Sbjct: 457 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI-------GLVPDSVTYNMM 509

Query: 83  IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
           +    K   + +      +M  NG  PDV V N LI+   K    D+A ++F  MK+ ++
Sbjct: 510 MKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL 569

Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
           KP   TY  LL      G++     +   M   G 
Sbjct: 570 KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGC 604



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L    +     ++++ M+  G  P    F++L     K   +        +M 
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
             G +PDV  YN +I    K     +A+  F +MKK  V P+  T   LL     A  ++
Sbjct: 636 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIE 694

Query: 164 PVYAIVRD 171
             Y I+ +
Sbjct: 695 DAYKIITN 702


>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 702

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 2/168 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ S+   +R +  + +Y D++ +G  P    + +L+    +     D      +MK
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTYVCLLNACAAAGQL 162
             G    V +YN L+S+C      D+A  IF++MK  E   P+  T+  L+   A +G++
Sbjct: 378 EKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRV 437

Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
               A +  M  AG     F    +I  +  K  + DD      +++E
Sbjct: 438 SEAEAALLQMREAGFEPTLFVLTSVIQCY-GKAKQVDDVVRTFDQVLE 484



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 62  DVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           ++Y++M   GV+P   +++ LI    +  R  Q    ++D +  NGF P+ + Y  L+  
Sbjct: 301 NIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKD-LITNGFTPNWSTYAALVRA 359

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM-TAAGAGL 179
            G+ +  D A+ I+ EMK+  +      Y  LL+ CA  G +D  + I +DM        
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDP 419

Query: 180 DKFCYAGLITAH 191
           D + ++ LIT +
Sbjct: 420 DSWTFSSLITVY 431



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 15/261 (5%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           ++ M   G +P      ++I    +   +       D+ +   +  D   ++ LI + G 
Sbjct: 233 FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGV 292

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
             N D  + I+EEMK   VKPN   Y  L+++   A +      I +D+   G   +   
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352

Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-----AENEMMGVSKEELY 238
           YA L+ A+     R  D A  I   +++ KG S      N      A+   +  + E   
Sbjct: 353 YAALVRAYGRA--RYGDDALAIYREMKE-KGLSLTVILYNTLLSMCADIGYVDEAFEIFQ 409

Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
           ++   E         S L+TVY     AC+    V   E  L  +++    P ++++   
Sbjct: 410 DMKNCETCDPDSWTFSSLITVY-----ACS--GRVSEAEAALLQMREAGFEPTLFVLTSV 462

Query: 299 IRCYLHSGDIDNGHKVFEDYI 319
           I+CY  +  +D+  + F+  +
Sbjct: 463 IQCYGKAKQVDDVVRTFDQVL 483



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 62  DVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
           +++ DM   +   P    F SLI       R+ +      QM+  GF P + V   +I  
Sbjct: 406 EIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQC 465

Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            GK K  D  +R F+++ +  + P+ +   CLLN
Sbjct: 466 YGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLN 499



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 68  MLDGVQPTRD-LFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
           +L+ ++P+R+ + +++ +   + S+ L+ +    D+M   G  PD A +  +IS   +  
Sbjct: 165 LLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNG 224

Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
              +A+  FE+M  +  +P+  T   +++A   AG +D   ++          +D   ++
Sbjct: 225 VPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFS 284

Query: 186 GLI 188
            LI
Sbjct: 285 TLI 287


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 166/409 (40%), Gaps = 47/409 (11%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           N   YN V+  L    RF       D M+   V P+   +  LI G MK    ++     
Sbjct: 289 NVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVL 348

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
            +M + GF P+  V+N LI   G C+  D  +A+R+ +EM    +KPN  T+  LL    
Sbjct: 349 VEMYSMGFAPNEVVFNALID--GYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFC 406

Query: 158 AAGQLDPVYAIVRDMTAAG--AGLDKFCY--------AGLITA-------HTNKIPRADD 200
            + Q++    ++  + ++G    +D   Y        +G ++A        +  I  +D 
Sbjct: 407 RSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDS 466

Query: 201 TATKIIELVEQSKG-------WSSVETSGNNAENE------MMGVSK----EELYNLPTA 243
             T ++  + + +G       W  +      A N       + G+ +    EE++ +   
Sbjct: 467 LLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEV--L 524

Query: 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303
           + +  +G  L R+   Y+     C +   ++    L E + +    PD Y     ++   
Sbjct: 525 KQMLEKGLLLDRI--SYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLA 582

Query: 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFL 363
             G ID+ H++  +       P    YA L+EG         ++ A     N++   + L
Sbjct: 583 DMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYC---KADRIEDAVKFFKNLDYEKVEL 639

Query: 364 SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412
           S  + +  +L+AA  + G  T A  + D M++R I P+     +  +G+
Sbjct: 640 SSVVYN--ILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGM 686



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%)

Query: 64  YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
           + ++  + V+ +  +++ LI    +   + + F  RD MK+ G LP  A Y+ LI     
Sbjct: 629 FKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCC 688

Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
               D+A  IFEEM+   + PN   Y  L+      GQ+D V +I+ +M++ G   +K  
Sbjct: 689 IGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKIT 748

Query: 184 YAGLITAH 191
           Y  +I  +
Sbjct: 749 YTIMIDGY 756



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%)

Query: 33  ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
           A +  A N    N ++  L  +     + +V   M+  G+   R  +++LI G  K  ++
Sbjct: 493 AVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKI 552

Query: 93  QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
           ++ F  +++M    F PD   YN+L+         D   R+  E K+Y   PN  TY  L
Sbjct: 553 EEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALL 612

Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           L     A +++      +++      L    Y  LI A+
Sbjct: 613 LEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAY 651



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 1/179 (0%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  ++ +  +   YN ++  L    +   +  +  +    G  P    +  L+ G  K 
Sbjct: 560 EEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKA 619

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R++D   F   +          VYN LI+   +  N  +A ++ + MK   + P   TY
Sbjct: 620 DRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATY 679

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
             L++     G++D    I  +M   G   + FCY  LI  H  K+ + D   + ++E+
Sbjct: 680 SSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHC-KLGQMDIVGSILLEM 737



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 58  FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
           F LRD    M   G+ PT   + SLI G     R+ +     ++M+  G LP+V  Y  L
Sbjct: 661 FKLRDA---MKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTAL 717

Query: 118 ISVCGKCKNSDQAI--RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175
           I   G CK     I   I  EM    ++PN  TY  +++     G +     ++ +M   
Sbjct: 718 IG--GHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRN 775

Query: 176 GAGLDKFCYAGL 187
           G   D   Y  L
Sbjct: 776 GIAPDTVTYNAL 787



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 7/192 (3%)

Query: 3   LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
           LL  +    K +G       FV       +++R         N +++SL          +
Sbjct: 189 LLHILCSQFKCLGSRCAFDIFVM------FSKRGVFPCLKTCNLLLSSLVKANELHKSYE 242

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+D +   GV P    F + I    KG R+ D      +M+  G  P+V  YN +I    
Sbjct: 243 VFD-LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLF 301

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           K    ++A+R  + M + +V P+  TY  L++        +    ++ +M + G   ++ 
Sbjct: 302 KSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEV 361

Query: 183 CYAGLITAHTNK 194
            +  LI  +  K
Sbjct: 362 VFNALIDGYCRK 373


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
           G++P    +++LI    +GS L D     ++M A+   PD+  YN ++SV G+C  + +A
Sbjct: 128 GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 187

Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
             +F+E+ +   +P+  TY  LL A A  G ++ V  +  ++  AG   D   Y  +I  
Sbjct: 188 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 247

Query: 191 HTNKIPRAD 199
           +  K+ R D
Sbjct: 248 Y-GKMGRLD 255



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD--TFFFRDQ 101
           +N ++       RF   R + D M    ++P    F++LI    K   L          +
Sbjct: 64  FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHE 123

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           ++  G  PD   YN LIS C +  N D A+ +FEEM   E +P+  TY  +++     G+
Sbjct: 124 VRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGK 183

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
                 + +++   G   D   Y  L+ A   +
Sbjct: 184 AQEAELMFKELVEKGFQPDAVTYNSLLYAFAKE 216



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 4/172 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   + +  +A  YN+++ +   +     +  V ++++  G +     ++++I    K 
Sbjct: 192 KELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKM 251

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            RL       D+M+A G  PD   Y  L+   GK     +A ++ EEM    +KP   T+
Sbjct: 252 GRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTF 311

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201
             L+ A A +G+ D        M  +G   D+  Y  ++    +   R+D+T
Sbjct: 312 SALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVML----DVFARSDET 359



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%)

Query: 40  NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           +A  Y  +V SL    R      V ++M   G++PT   F +LI    K  R  D     
Sbjct: 272 DAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTF 331

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           D+M  +G  PD   Y  ++ V  +   + + + ++  M K   KP+   Y  LL A A  
Sbjct: 332 DRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKG 391

Query: 160 GQLDPVYAIVRDMTA 174
            + D +  +++DM A
Sbjct: 392 NEHDEIEGVIQDMEA 406



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +  +  +   YNT++       R  L   +YD+M   G  P    +  L+    K 
Sbjct: 227 EELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKM 286

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R+ +     ++M   G  P +  ++ LI    K    D A R F+ M +  VKP+   Y
Sbjct: 287 DRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAY 346

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           + +L+  A + +   +  + R M   G   D   Y  L+ A
Sbjct: 347 LVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 387



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%)

Query: 45  NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
           NT++   T    F    +VY  ++  G++P  D +++LIV   +  R ++ F    +M  
Sbjct: 766 NTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGK 825

Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            G  P +  Y  L++  GK K  +QA  +FEEM+    + N   Y
Sbjct: 826 RGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIY 870



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 126/303 (41%), Gaps = 29/303 (9%)

Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
           LP V V+N ++ V  +    D A ++ + M+  +++P+  ++  L+NA A +G L    A
Sbjct: 58  LPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVA 117

Query: 168 --IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225
             ++ ++  AG   D   Y  LI+A +       D A  + E +  S+    + T     
Sbjct: 118 LELLHEVRQAGLRPDAITYNTLISACSQG--SNLDDAVAVFEEMIASECRPDLWTY---- 171

Query: 226 ENEMMGV----SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281
            N M+ V     K +   L   E V +  GF    +T Y+   +A A+  DV+ +E + E
Sbjct: 172 -NAMVSVHGRCGKAQEAELMFKELVEK--GFQPDAVT-YNSLLYAFAKEGDVERVERVCE 227

Query: 282 MLKKD--RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE--GA 337
            L K   RK    Y  M  I  Y   G +D    ++++       P A  Y  LV+  G 
Sbjct: 228 ELVKAGFRKDGITYNTM--IHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGK 285

Query: 338 MFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK 397
           M   +  G  L +         +  L P + +   L+ A  KSG    A   +D M    
Sbjct: 286 MDRISEAGKVLEE-------MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESG 338

Query: 398 ITP 400
           + P
Sbjct: 339 VKP 341



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 10/216 (4%)

Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           MKA G+LP++ +Y  +IS+    K       +  EM+    KP+      LL      G 
Sbjct: 718 MKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGN 777

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221
            D    +   +  AG   D+  Y  LI  ++    R ++  T + E+     G   +   
Sbjct: 778 FDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNF-RPEEGFTLLYEM-----GKRGLTPK 831

Query: 222 GNNAENEMMGVSKEELYNLPTA--EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
             + +  +    K +L+       E +  +G  L+R  ++YH+        ++    E L
Sbjct: 832 LESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNR--SIYHMMMKIYRNARNHSKAEHL 889

Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
           L  +K+D   P +  +   +  Y  SG  D   KV 
Sbjct: 890 LSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVL 925



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/174 (17%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 44  YNTVVTSLTSQRR----FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
           YNT++   +   R    F LL +    M   G+ P  + +  L+  + K    +      
Sbjct: 800 YNTLIVMYSRNFRPEEGFTLLYE----MGKRGLTPKLESYKILLAASGKAKLWEQADLLF 855

Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
           ++M+  G+  + ++Y+ ++ +    +N  +A  +   MK+  ++P   T   L+ +   +
Sbjct: 856 EEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTS 915

Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
           G  D    ++  + ++   +    Y+ ++ A+     R  D +  I +L+E  +
Sbjct: 916 GHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYL----RNRDYSLGITKLLEMKR 965


>gi|255685732|gb|ACU28355.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 178

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+++M+  G +P   ++  LI G  K   ++D      +M   GF PDV  Y+ +++  G
Sbjct: 8   VFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVN--G 65

Query: 123 KCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
            CKN   ++A+  F+  +   +  N   Y  L++    AG++D    +  +M+  G   D
Sbjct: 66  LCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDXAERLFEEMSEKGCTRD 125

Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
            +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 126 SYCYNALIDAFT-KHGKVDE-ALALFKRMEEEEG 157


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%)

Query: 17  ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
            + + F    A  +E  +R    N   Y  ++ +L    R     D +D +  DGV P  
Sbjct: 316 CMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDA 375

Query: 77  DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
             ++SLI    +  RL+D +   ++M+  G  P+V  +N LIS       ++ A+++  +
Sbjct: 376 SFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVK 435

Query: 137 MKKYEVKPNGQTYVCLLNACA 157
           M++    P+ +TY  LL  C 
Sbjct: 436 MEEQSCNPDIKTYTPLLKLCC 456



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 1/185 (0%)

Query: 28  GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM 87
           G  +  R     + + +NT+V      R      D  ++M   G  P+   + SL+    
Sbjct: 257 GVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC 316

Query: 88  KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
                Q  +   D+M+     P+V  Y  L+   GK   + +A+  F+++K+  V P+  
Sbjct: 317 MEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDAS 376

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207
            Y  L+     AG+L+  Y++V +M   G   +   +  LI+A  +   +A++    +++
Sbjct: 377 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDH-SQAENALKLLVK 435

Query: 208 LVEQS 212
           + EQS
Sbjct: 436 MEEQS 440



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           EE  +  ++ +   Y ++V +   ++ F  +  + D+M      P    +  L+    K 
Sbjct: 294 EEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKA 353

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
            R ++     D++K +G  PD + YN LI + G+    + A  + EEM+   + PN  T+
Sbjct: 354 GRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTF 413

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
             L++A     Q +    ++  M       D   Y  L+
Sbjct: 414 NTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLL 452



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A +AS YN+++  L    R      V ++M   G+ P    F++LI      S+ ++   
Sbjct: 372 APDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALK 431

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE--EMKKYEVKPNGQTYVCLLNA 155
              +M+     PD+  Y  L+ +C  CK     I +F    M + ++ P+  TY  L++ 
Sbjct: 432 LLVKMEEQSCNPDIKTYTPLLKLC--CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSW 489

Query: 156 CAAAGQLDPVYAIVRDMTAAG 176
               G++      + +M + G
Sbjct: 490 LCRNGKVAQSCLFLEEMVSKG 510


>gi|125549468|gb|EAY95290.1| hypothetical protein OsI_17116 [Oryza sativa Indica Group]
          Length = 608

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           V+ +M+  G       + ++I    K SR  D       MK  G  P++ VYN L+ + G
Sbjct: 424 VFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAVMKKKGCEPNIWVYNSLLDMHG 483

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
           +  NS QA +I++EM + +++P+  +Y  ++NA   +G+LD    + ++    G  +D  
Sbjct: 484 RLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGGKVDT- 542

Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
             AGL+    +K  R ++    +IEL++  +G
Sbjct: 543 ALAGLMVGVFSKCSRFNE----LIELLKDMQG 570



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 1/163 (0%)

Query: 38  ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
           A NA+ Y++++ SL          D+Y++    G+    D+F  +IV  ++  R++ T  
Sbjct: 294 APNATIYSSIIRSLADAHESSAAEDLYNEAWKKGMLGDPDMFLKVIVMHVEAGRVEKTMG 353

Query: 98  FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
               M+  G      + + +++   K +    AIR ++++     +P   TY  ++N   
Sbjct: 354 VAKDMRETGLRVTDCILSTIVNGFVKRRGLKPAIRAYDKLIALGCEPGQVTYASVINVYC 413

Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
             G+ D   ++  +M   G       Y  +I+ +  KI RA D
Sbjct: 414 QLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMY-GKISRASD 455


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
           thaliana]
          Length = 1184

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 4/163 (2%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R+   +   Y  +++             ++ +M   G++P    F  LI G  K  
Sbjct: 819 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 878

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
            ++D F   + M   G  P+V  Y  LI   G CK    D A  +  EM K  ++PN  T
Sbjct: 879 HMKDAFRVHNHMIQAGCSPNVVTYTTLID--GLCKEGDLDSANELLHEMWKIGLQPNIFT 936

Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
           Y  ++N    +G ++    +V +  AAG   D   Y  L+ A+
Sbjct: 937 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 979



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 4/161 (2%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E   R+    N+  Y +++  L    +     + + +M+  G+ P   ++ +LI G  K 
Sbjct: 748 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 807

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
             ++    F  +M +    PDV  Y  +IS  G C+  D  +A ++F EM    ++P+  
Sbjct: 808 GDIRAASKFFYEMHSRDITPDVLTYTAIIS--GFCQIGDMVEAGKLFHEMFCKGLEPDSV 865

Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
           T+  L+N    AG +   + +   M  AG   +   Y  LI
Sbjct: 866 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 906



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%)

Query: 35   RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
            +  A NA+ +N++V     +        +Y DM   GV P    + +L+ G  K   +++
Sbjct: 1033 KGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKE 1092

Query: 95   TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
             +F   +MK  GF   V+ Y+ LI    K K   +A  +F++M++
Sbjct: 1093 AWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 1137



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%)

Query: 61   RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
            +++  +M+  G+QPT   F+ L+ G      L+D     + M A G  P+   +N L+  
Sbjct: 989  QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 1048

Query: 121  CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
                 N   A  I+++M    V P+G+TY  L+     A  +   + + ++M   G  + 
Sbjct: 1049 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 1108

Query: 181  KFCYAGLI 188
               Y+ LI
Sbjct: 1109 VSTYSVLI 1116



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 63   VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
            V++ M+  G  P    + +LI G  K   L        +M   G  P++  YN +++   
Sbjct: 886  VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 945

Query: 123  KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---- 178
            K  N ++A+++  E +   +  +  TY  L++A   +G++D    I+++M   G      
Sbjct: 946  KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 1005

Query: 179  -----LDKFCYAGLI 188
                 ++ FC  G++
Sbjct: 1006 TFNVLMNGFCLHGML 1020



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 10/162 (6%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVY---DDMMLDGVQPTRDLFHSLIVGTMKGSR 91
           + Y  +   Y+TVV       RF  L  V+   + M   G++P   ++ S+I    +  +
Sbjct: 718 KGYTPDVISYSTVVNGYC---RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK 774

Query: 92  LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTY 149
           L +      +M   G LPD  VY  LI   G CK  D   A + F EM   ++ P+  TY
Sbjct: 775 LAEAEEAFSEMIRQGILPDTVVYTTLID--GFCKRGDIRAASKFFYEMHSRDITPDVLTY 832

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
             +++     G +     +  +M   G   D   +  LI  +
Sbjct: 833 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 874



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 62/152 (40%)

Query: 40   NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
            N   Y T++  L  +       ++  +M   G+QP    ++S++ G  K   +++     
Sbjct: 898  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 957

Query: 100  DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
             + +A G   D   Y  L+    K    D+A  I +EM    ++P   T+  L+N     
Sbjct: 958  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 1017

Query: 160  GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
            G L+    ++  M A G   +   +  L+  +
Sbjct: 1018 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 145/393 (36%), Gaps = 73/393 (18%)

Query: 102  MKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTY---------V 150
            M+  G+ PDV  Y+ +++  G C+    D+  ++ E MK+  +KPN   Y         +
Sbjct: 715  MELKGYTPDVISYSTVVN--GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRI 772

Query: 151  CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--------HTNKIPRADDTA 202
            C L     A        I+ D       +D FC  G I A        H+  I     T 
Sbjct: 773  CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 832

Query: 203  TKII-------ELVEQSKGWSSVETSGNNAENEMMGVSKEELYN-------LPTAEYVHR 248
            T II       ++VE  K +  +   G   ++    V+  EL N       +  A  VH 
Sbjct: 833  TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS----VTFTELINGYCKAGHMKDAFRVHN 888

Query: 249  ---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
               + G    ++T   +    C E  D+ +   LL  + K    P+++     +     S
Sbjct: 889  HMIQAGCSPNVVTYTTLIDGLCKE-GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 947

Query: 306  GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLS 364
            G+I+   K+  ++  +        Y TL++     Y   G M  AQ+ L  M  +   L 
Sbjct: 948  GNIEEAVKLVGEFEAAGLNADTVTYTTLMD----AYCKSGEMDKAQEILKEMLGKG--LQ 1001

Query: 365  PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP----------------SLPAVEAY 408
            P + +  +L+      G       + + M A+ I P                +L A  A 
Sbjct: 1002 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAI 1061

Query: 409  YNGLKDREVPADDPRLVVVSRAYDNLLRGRPGA 441
            Y  +  R V  D        + Y+NL++G   A
Sbjct: 1062 YKDMCSRGVGPD-------GKTYENLVKGHCKA 1087


>gi|357127910|ref|XP_003565620.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Brachypodium distachyon]
          Length = 1088

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 13/301 (4%)

Query: 35  RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
           +  A +   Y TV+  +  +     +    D+M   G +P    + SL+ G  K +RL+D
Sbjct: 266 KGIAADVVNYTTVIDGMCREGSVDKVMGFLDEMERSGAKPNLITYTSLVGGFCKRNRLED 325

Query: 95  TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
            F    +++  G + D  VY+ LI    K  + D+A  +  EM+   +K    TY  +++
Sbjct: 326 AFSVVRKLEQKGVVVDEYVYSILIDSLCKMGDLDKAFCLLGEMEGKGIKAGTVTYNTVID 385

Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
               AG  +    I     + G   D F Y+ L+      I   D T    I+   +S G
Sbjct: 386 GLCKAGDTNNAIEI-----SQGVAADNFTYSMLLHG---CIKGEDSTGIMAIKSRLESSG 437

Query: 215 WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR-RGGFLSRLLTVYHVAFHACAELKDV 273
            +    + N     +  V+K +          HR R   LS     YH   +   +L D+
Sbjct: 438 IAVDVVTCNILIKALFMVNKMD----DACSLFHRMRDMGLSPNTVTYHTIINMMCKLGDI 493

Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
                L +  KKD+      +    I    + G ++   ++F D I  +  P +  Y  L
Sbjct: 494 GRAVELFDEYKKDKSLSGTAVHNVLIGALCNGGKVNIAEQIFYDLIHKKLRPDSCTYRKL 553

Query: 334 V 334
           +
Sbjct: 554 I 554



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 47  VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
           VV  L  + +   + ++  +M   G+      + SL+ G M G  L +       M   G
Sbjct: 208 VVNLLGREGKIGEVAELVSEMEQKGMIGDAVFYSSLVHGYMTGGLLMEGLREHRLMLDKG 267

Query: 107 FLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
              DV   NY   + G C+    D+ +   +EM++   KPN  TY  L+       +L+ 
Sbjct: 268 IAADVV--NYTTVIDGMCREGSVDKVMGFLDEMERSGAKPNLITYTSLVGGFCKRNRLED 325

Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
            +++VR +   G  +D++ Y+ LI
Sbjct: 326 AFSVVRKLEQKGVVVDEYVYSILI 349



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/165 (18%), Positives = 67/165 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           E+  +  ++ + + Y+ VV  L          D+ + M  +G+ PT  + +S++ G  + 
Sbjct: 708 EQAEQSGFSVDLAMYSIVVEGLCRGGYLEKALDLCETMQKEGIHPTIIVHNSVLSGLCQH 767

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
               + F   D ++++  LP +  Y  LI    +    D A ++ ++M    ++P  + Y
Sbjct: 768 GCFTEAFRLFDYLESSNILPTIITYAILIGALCREGFLDDAYQLIQKMSNKGIRPTTRVY 827

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
             L++     G  +    ++          D F    +I  H  K
Sbjct: 828 NLLISGYCNYGLTEKALGLMSHFEEHFLLPDAFTLGSVINGHCLK 872


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           Y+ ++  L  + +     +++D+M+  G+ P    F +LI G  K  R+        QM 
Sbjct: 207 YSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQML 266

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
           +    PD+  YN LI   G CK  +  QA  + +EM    +KP+  TY  L++ C   G 
Sbjct: 267 SQSLSPDLITYNTLIY--GLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGD 324

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
           ++  +   + M      LD   Y  LI+ 
Sbjct: 325 METAFEHQKRMIQENIRLDDVVYTALISG 353



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 4/120 (3%)

Query: 71  GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--D 128
           G++P+   F++LI G ++   L + F  +  M A+G  PDV  Y+ LI+  G CK S  D
Sbjct: 164 GLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN--GLCKESKMD 221

Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
            A  +F+EM    + PNG T+  L++     G++D    I + M +     D   Y  LI
Sbjct: 222 DANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI 281



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 67  MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
           M   GVQP    +  LI G  K S++ D     D+M   G +P+   +  LI   G CKN
Sbjct: 195 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLID--GHCKN 252

Query: 127 S--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
              D A+ I+++M    + P+  TY  L+      G+L   + ++ +M+  G   DK  Y
Sbjct: 253 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITY 312

Query: 185 AGLI 188
             LI
Sbjct: 313 TTLI 316



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 59/147 (40%)

Query: 30  EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
           +E   +    N   + T++       R  L  ++Y  M+   + P    +++LI G  K 
Sbjct: 228 DEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 287

Query: 90  SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
             L+      D+M   G  PD   Y  LI  C K  + + A    + M +  ++ +   Y
Sbjct: 288 GELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVY 347

Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAG 176
             L++     G+      ++R+M + G
Sbjct: 348 TALISGLCQEGRSVDAEKMLREMLSVG 374



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YNT++  L  +       D+ D+M ++G++P +  + +LI G  K   ++  F  + +M 
Sbjct: 277 YNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMI 336

Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPN 145
                 D  VY  LIS +C + ++ D A ++  EM    +KPN
Sbjct: 337 QENIRLDDVVYTALISGLCQEGRSVD-AEKMLREMLSVGLKPN 378


>gi|341605707|gb|AEK82956.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           ++ V+  L  + +      V+++M+  G +P   ++  LI G  K   ++D      +M 
Sbjct: 20  FSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 79

Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
             GF PDV  Y+ +++  G CKN   ++A+  F+      +  N   Y  L++    AG+
Sbjct: 80  BEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGR 137

Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
           +D    +  +M+  G   D +CY  LI A T K  + D+ A  + + +E+ +G
Sbjct: 138 IDEAERLFEEMSEKGCTRDSYCYNALIDALT-KHGKVDE-AMXLFKRMEEEEG 188


>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
 gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
          Length = 356

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 13/201 (6%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E   R  A     YN V+ + T +     + +V  +M+   ++P    F++LI       
Sbjct: 88  EIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSR 147

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
           + +        MKA G LPD+  Y  LI +  +     +AI +FEEM   + +P+   Y 
Sbjct: 148 KPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYS 207

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++    AG +     I   +   G   +   Y  LI+AH +K             L+E
Sbjct: 208 LLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHK------------GLLE 255

Query: 211 QS-KGWSSVETSGNNAENEMM 230
           +S K +S +E  G  A+  ++
Sbjct: 256 ESRKHFSQMEAYGCRADVHLL 276



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 44  YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
           YN ++ +    +R     DVY  M+ +G+ P    +  L+ G+ K     D  F   ++K
Sbjct: 33  YNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPDEVTYDILVSGSGKNGYPIDRLFL--EIK 90

Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
           + G    +  YN +I    K  + D+   +  EM + E++P+  ++  L+ A A + + +
Sbjct: 91  SRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPE 150

Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
               +  +M AAG   D   Y  LI
Sbjct: 151 RGLQVFSNMKAAGVLPDIVTYTTLI 175



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 79  FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
           ++++I    +  R +D +    QM A G  PD   Y+ L+S  G  KN     R+F E+K
Sbjct: 33  YNAMIAAYYQAKRPKDAWDVYHQMLAEGIDPDEVTYDILVS--GSGKNGYPIDRLFLEIK 90

Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
              V    ++Y  ++ A    G +D V  ++R+M       D F +  LI A+ 
Sbjct: 91  SRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYA 144



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 31  EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
           E  R+    +   +N ++ +    R+      V+ +M   GV P    + +LI    + S
Sbjct: 123 EMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSS 182

Query: 91  RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
             ++     ++M  N   PD  VY+ L+SV GK      A+ IF  ++    +PN  TY 
Sbjct: 183 MHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYT 242

Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
            L++A    G L+        M A G   D      +I A+  K    +D A  +  L  
Sbjct: 243 SLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYA-KAGMVNDAANLLHRLTA 301

Query: 211 Q 211
           Q
Sbjct: 302 Q 302



 Score = 41.6 bits (96), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 49/114 (42%)

Query: 63  VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
           ++  + L+G +P    + SLI   +    L+++     QM+A G   DV + N +I    
Sbjct: 225 IFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYA 284

Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
           K    + A  +   +    V PN  +Y  ++     AG ++   A    M+ AG
Sbjct: 285 KAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSGAG 338


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,930,106,881
Number of Sequences: 23463169
Number of extensions: 289956632
Number of successful extensions: 716069
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5767
Number of HSP's successfully gapped in prelim test: 2172
Number of HSP's that attempted gapping in prelim test: 650140
Number of HSP's gapped (non-prelim): 54063
length of query: 445
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 299
effective length of database: 8,933,572,693
effective search space: 2671138235207
effective search space used: 2671138235207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)