BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013323
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYR5|PP351_ARATH Pentatricopeptide repeat-containing protein At4g35850,
mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1
SV=1
Length = 444
Score = 605 bits (1561), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/441 (65%), Positives = 354/441 (80%), Gaps = 5/441 (1%)
Query: 3 LLQSIYRHHKSVGGAL-GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLR 61
L+QSI ++S+ AL RR+F +S EE A+RNYAN+ SEYNT V S+T+QRR +LLR
Sbjct: 4 LMQSISGRNRSLVRALVSRRYFASSP--EEIAKRNYANDLSEYNTAVNSVTAQRRHYLLR 61
Query: 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
DVYDDM LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G PDV +YN+LIS C
Sbjct: 62 DVYDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTC 121
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
GKCKN +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++
Sbjct: 122 GKCKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQ 181
Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
FCYAGLITAH NK PR D+ +TKI+E VEQSKGWS++++S +AE+ M +S+EELYN+P
Sbjct: 182 FCYAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIP 241
Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
TA+Y H R FL R LTVYHVAF A A+LKDV+A E LLEMLKKD K D Y ++Q +RC
Sbjct: 242 TADYSH-RTRFLQRNLTVYHVAFSALADLKDVKATEALLEMLKKDGKDTDTYCMLQIMRC 300
Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNI 361
YLHS D +NG K+F+DY+ ++K P ELY TL+EGAM GYT GM++AQDTL+ MN RN
Sbjct: 301 YLHSQDFENGLKLFQDYMSADKIPAMELYTTLIEGAMTGYTDNGMKIAQDTLIQMNERNF 360
Query: 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADD 421
FL PR GS+LLL AAGEK+GGYT AN IWDLM AR I P+L AVEAYY GLK+RE+P DD
Sbjct: 361 FLDPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARNILPTLAAVEAYYKGLKEREIPEDD 420
Query: 422 PRLVVVSRAYDNLLRGRPGAV 442
PRL++V+R Y+N LR R G +
Sbjct: 421 PRLMLVTRTYNN-LRLREGTL 440
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 16/311 (5%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E +RN + Y TVV + S ++ +M+ G +P ++ +LI ++ S
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
R D +MK G PD+ YN LI K K D+A EM + +KPN TY
Sbjct: 467 RFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYG 526
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
++ A + V++M G +K GLI + K +++E
Sbjct: 527 AFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK-----------GKVIE 575
Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELY---NLPTAEYVHR--RGGFLSRLLTVYHVAFH 265
+ S+ G + + V L+ + AE + R RG ++ + Y V +
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635
Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325
++L ++Q ++ + + ++ +P+V I + + SG+I+ ++ ++ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 326 PAELYATLVEG 336
A Y T+++G
Sbjct: 696 NAVTYCTIIDG 706
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 121/318 (38%), Gaps = 18/318 (5%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
+A Y ++ L + +++ +M G+ P + LI G K +Q
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
D+M G P+V +YN L+ G C++ ++A + +EM + PN TY +++
Sbjct: 651 DEMVEEGLTPNVIIYNMLLG--GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 217
+G L + + +M G D F Y L+ R +D I KG +S
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC----RLNDVERAITIFGTNKKGCAS 764
Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHR-RGGFLSRLL----TVYHVAFHACAELKD 272
N N + K EL E ++R G R Y++ + +
Sbjct: 765 STAPFNALINWVFKFGKTEL----KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGN 820
Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
++A + L ++ P V + Y G VF++ I + P +Y+
Sbjct: 821 LEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSV 880
Query: 333 LVEGAMF-GYTPKGMQLA 349
++ + G T K + L
Sbjct: 881 IINAFLKEGMTTKALVLV 898
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 29 AEEYAR----RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV 84
AEE R + A + Y ++ + ++D+M+ +G+ P +++ L+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 85 GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEV 142
G + ++ D+M G P+ Y +I G CK+ D +A R+F+EMK +
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIID--GYCKSGDLAEAFRLFDEMKLKGL 728
Query: 143 KPNGQTYVCLLNACA 157
P+ Y L++ C
Sbjct: 729 VPDSFVYTTLVDGCC 743
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E N YN ++ +++ D+M + G+ P + ++I G K
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
L + F D+MK G +PD VY L+ C + + ++AI IF KK
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKK 760
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 1/168 (0%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y+ ++ L R + + +M+ G+ ++ I K ++ D M
Sbjct: 315 YSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMI 374
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
A+G +P Y LI + KN Q + EMKK + + TY ++ ++G LD
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
Y IV++M A+G + Y LI R D + E+ EQ
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQN-SRFGDAMRVLKEMKEQ 481
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%)
Query: 64 YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
Y M+ G+ + L+ G K ++ D +M+ G PDV Y LI+ K
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639
Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
N +A IF+EM + + PN Y LL +G+++ ++ +M+ G +
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699
Query: 184 YAGLITAH 191
Y +I +
Sbjct: 700 YCTIIDGY 707
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%)
Query: 65 DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
+ M+ G+ P + + LI G K RL+D +M + G D Y+ LI K
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325
Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
+N+D A + EM + + Y C + + G ++ A+ M A+G Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385
Query: 185 AGLITAH 191
A LI +
Sbjct: 386 ASLIEGY 392
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 116/335 (34%), Gaps = 70/335 (20%)
Query: 23 FVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL 82
F +S G E R S ++ +L R L DVY M+ V +H L
Sbjct: 174 FSSSMGLELVPR------LSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHML 227
Query: 83 IVGTMKGSRLQ---DTFF------------------FRDQMKANGFLPDVAVYNYLISVC 121
I+ + +Q D F ++ M G +P Y+ LI
Sbjct: 228 IIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGL 287
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
K K + A + EM V + TY L++ D +V +M + G +
Sbjct: 288 CKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKP 347
Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
+ Y I + + ++E++K L++
Sbjct: 348 YMYDCCICVMSKE------------GVMEKAKA----------------------LFDGM 373
Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD-RKSPDVYIVMQNIR 300
A + + + L+ Y C E Q E L+EM K++ SP Y +
Sbjct: 374 IASGLIPQAQAYASLIEGY------CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGM 427
Query: 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
C SGD+D + + ++ I S P +Y TL++
Sbjct: 428 C--SSGDLDGAYNIVKEMIASGCRPNVVIYTTLIK 460
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N YN ++ L + ++++ M + PT + SL+ G K R + F
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG-----QTYVCLLN 154
D+ A G PD +Y+ +I+ K + +A+ + ++M +G T LL+
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLS 923
Query: 155 ACAAAGQLDPVYAIVRDMT 173
A G+++ ++ +M
Sbjct: 924 GFAKVGEMEVAEKVMENMV 942
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 2/177 (1%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
++ R + S ++++V S+ R VY +M G +P+ +F SLI K
Sbjct: 337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA 396
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
+L D+MK +GF P+ +Y +I K + A+ +F++M+K P TY
Sbjct: 397 GKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTY 456
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
CLL A +GQ+D I MT AG Y L+T NK R D A KI+
Sbjct: 457 SCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANK--RLVDVAGKIL 511
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
+ S Y ++ SL R ++ M ++P+ +F SL+ K RL +
Sbjct: 312 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 371
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M+ G P ++ LI K D A+R+++EMKK +PN Y ++ + A +
Sbjct: 372 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKS 431
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
G+L+ + +DM AG Y+ L+ H D+A KI
Sbjct: 432 GKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGS--GQVDSAMKI 475
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 84/197 (42%), Gaps = 5/197 (2%)
Query: 19 GRRFFVTSAGAEEYARRNYAN---NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75
GR F + EE + + ++ + + YN V+ L + + + G +
Sbjct: 218 GRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKID 277
Query: 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135
+++L++ + F + M+ L D + Y +I K D A ++F+
Sbjct: 278 TQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQ 337
Query: 136 EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195
+MK+ +++P+ + L+++ AG+LD + +M G + LI ++
Sbjct: 338 QMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA- 396
Query: 196 PRADDTATKIIELVEQS 212
DTA ++ + +++S
Sbjct: 397 -GKLDTALRLWDEMKKS 412
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 6/184 (3%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E R + N + +++ + + ++V M G++P +F +L+ G
Sbjct: 226 EDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAG 285
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
++ D + + M+ GF P+V Y LI ++C K D+A+R+F EM++Y + + TY
Sbjct: 286 KMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTY 345
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
L++ G +D Y+++ DM G + Y ++ AH K + + +EL+
Sbjct: 346 TALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKK-----EQFEECLELI 400
Query: 210 EQSK 213
E+ K
Sbjct: 401 EKMK 404
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 8/174 (4%)
Query: 3 LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
L+Q++ R K + A+ R FV E R + Y +++
Sbjct: 312 LIQALCRTEKRMDEAM--RVFV------EMERYGCEADIVTYTALISGFCKWGMIDKGYS 363
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
V DDM GV P++ + ++V K + ++ ++MK G PD+ +YN +I +
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
K +A+R++ EM+ + P T+V ++N + G L ++M + G
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRG 477
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 15 GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG--- 71
G LG RFF+ + + Y ++ ++V L+ R+F + + ++M
Sbjct: 110 AGNLGYRFFLWAT-----KQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPEL 164
Query: 72 VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131
++P +LF L+ + ++ D+M G PD V+ L+ K + +A
Sbjct: 165 IEP--ELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEAS 222
Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT-- 189
++FE+M++ + PN + + LL G+L ++ M AG D + L++
Sbjct: 223 KVFEDMRE-KFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGY 281
Query: 190 AHTNKIPRADD 200
AH K+ A D
Sbjct: 282 AHAGKMADAYD 292
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
D+ +DM G +P + + LI + R+ + +M+ G D+ Y LIS
Sbjct: 292 DLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
K D+ + ++M+K V P+ TY+ ++ A Q + ++ M G D
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411
Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
Y +I A K+ E+ E + W+ +E +G
Sbjct: 412 LLIYNVVIR-----------LACKLGEVKEAVRLWNEMEANG 442
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Query: 34 RRNYANNASEYNTVVTSLT-SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
+R + N + Y ++ +L +++R V+ +M G + + +LI G K +
Sbjct: 299 KRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI 358
Query: 93 QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
+ D M+ G +P Y ++ K + ++ + + E+MK+ P+ Y +
Sbjct: 359 DKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVV 418
Query: 153 LNACAAAGQLDPVYAIVRDMTAAG--AGLDKF 182
+ G++ + +M A G G+D F
Sbjct: 419 IRLACKLGEVKEAVRLWNEMEANGLSPGVDTF 450
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Query: 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
+A+E L EM K + PD Y+ + +G + KVFED EKFPP Y T
Sbjct: 185 KAVEVLDEMPKYGLE-PDEYVFGCLLDALCKNGSVKEASKVFEDM--REKFPPNLRYFT- 240
Query: 334 VEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392
++G+ +G + A++ LV M L P + L++ +G A + +
Sbjct: 241 --SLLYGWCREGKLMEAKEVLVQMKEAG--LEPDIVVFTNLLSGYAHAGKMADAYDLMND 296
Query: 393 MQARKITPSLPAVEAYYNGLKDREVPADDPRLVVV 427
M+ R P++ L E D+ V V
Sbjct: 297 MRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFV 331
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 76/145 (52%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN++ + + R+ + + ++ M+ +GV+PTR ++ ++ G RL+ F + MK
Sbjct: 223 YNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMK 282
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G PD A +N +I+ + K D+A ++F EMK ++ P+ +Y ++ A ++D
Sbjct: 283 TRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVD 342
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
I +M ++G + Y+ L+
Sbjct: 343 DGLRIFEEMRSSGIEPNATTYSTLL 367
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 1/158 (0%)
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
R + DM GV D+F LI K +Q++ +MK G + YN L V
Sbjct: 170 RCILLDMPEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKV 229
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
+ A R F +M V+P TY +L + +L+ DM G D
Sbjct: 230 ILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPD 289
Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218
+ +I + + D+ +E+ G S V
Sbjct: 290 DATFNTMINGFC-RFKKMDEAEKLFVEMKGNKIGPSVV 326
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%)
Query: 36 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
NY YN ++ SL +++ L+ VY M+ DG P ++ L+ + ++
Sbjct: 214 NYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRF 273
Query: 96 FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
D+M +GF PD YN L+ + GK A+ MK+ + P+ Y L++
Sbjct: 274 DRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDG 333
Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
+ AG L+ + +M AG D CY +IT +
Sbjct: 334 LSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYV 370
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 10/239 (4%)
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
D+M +GF +N LI CG+ + QA+ F + K + +P +Y +LN+
Sbjct: 173 DEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGV 232
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH--TNKIPRADDTATKIIELVEQSKGWSS 217
Q + + + M G D Y L+ + K+ R D ++ + E ++ S
Sbjct: 233 KQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFD----RLFD--EMARDGFS 286
Query: 218 VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277
++ N ++G + L L T ++ G + + Y + +++A +
Sbjct: 287 PDSYTYNILLHILGKGNKPLAALTTLNHMKEVG--IDPSVLHYTTLIDGLSRAGNLEACK 344
Query: 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
L+ + K PDV I Y+ SG++D ++F + + P Y +++ G
Sbjct: 345 YFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRG 403
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E AR ++ ++ YN ++ L + + M G+ P+ + +LI G +
Sbjct: 278 DEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRA 337
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
L+ +F D+M G PDV Y +I+ D+A +F EM PN TY
Sbjct: 338 GNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTY 397
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
++ AG+ ++++M + G + Y+ L++ + K + + I E+V
Sbjct: 398 NSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVS-YLRKAGKLSEARKVIREMV 456
Query: 210 EQ 211
++
Sbjct: 457 KK 458
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
++D+M DG P ++ L+ KG++ + MK G P V Y LI
Sbjct: 276 LFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLS 335
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
+ N + +EM K +P+ Y ++ +G+LD + R+MT G + F
Sbjct: 336 RAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVF 395
Query: 183 CYAGLI 188
Y +I
Sbjct: 396 TYNSMI 401
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y T++ L+ + D+M+ G +P + +I G + L +M
Sbjct: 327 YTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMT 386
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
G LP+V YN +I G C + +A + +EM+ PN Y L++ AG+
Sbjct: 387 VKGQLPNVFTYNSMIR--GLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGK 444
Query: 162 LDPVYAIVRDMTAAG 176
L ++R+M G
Sbjct: 445 LSEARKVIREMVKKG 459
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 139/348 (39%), Gaps = 31/348 (8%)
Query: 2 RLLQSIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
R L SI+ +K + A ++F + + E+ R ++N YN ++ + + L
Sbjct: 80 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 139
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
+ MM G +P+ SL+ G G R+ D DQM G+ PD + LI
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
+ +A+ + + M + +PN TY ++N G +D + ++ M AA +
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAN 259
Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKG-------WSSVETSGNNAENEMMGVS 233
Y+ +I + K DD E+ ++KG +SS+ + N E
Sbjct: 260 VVIYSTVIDSLC-KYRHEDDALNLFTEM--ENKGVRPNVITYSSLISCLCNYER------ 310
Query: 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRK 288
++ + R + V F+A E K V+A + EM+K+
Sbjct: 311 --------WSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS-I 361
Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
PD++ I + +D +FE I + FP Y TL+ G
Sbjct: 362 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%)
Query: 35 RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
R N +N ++ + + + +YD+M+ + P + SLI G RL +
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383
Query: 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
+ M + P+V YN LI+ K K D+ + +F EM + + N TY L++
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443
Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
A D + + M + G + Y L+
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLL 477
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y+++++ L + R+ + DM+ + P F++LI +K +L +
Sbjct: 294 NVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLY 353
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
D+M PD+ Y+ LI+ G C + D+A +FE M + PN TY L+N
Sbjct: 354 DEMIKRSIDPDIFTYSSLIN--GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
A ++D + R+M+ G + Y LI
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N YNT++ +R +++ +M G+ + +LI G + +
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
QM ++G P++ YN L+ G CKN ++A+ +FE +++ +++P TY ++
Sbjct: 459 KQMVSDGVHPNIMTYNTLLD--GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516
Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
AG+++ + + ++ G D Y +I+ K
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/334 (19%), Positives = 122/334 (36%), Gaps = 15/334 (4%)
Query: 3 LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
L+ ++ H+K+ A + +R N Y VV L + L +
Sbjct: 196 LIHGLFLHNKASEAV---------ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 246
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
+ + M ++ ++ ++I K D +M+ G P+V Y+ LIS
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
+ A R+ +M + ++ PN T+ L++A G+L + +M D F
Sbjct: 307 NYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 366
Query: 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242
Y+ LI + D A + EL+ + +V T +E L
Sbjct: 367 TYSSLINGFC--MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVEL-F 423
Query: 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY 302
E R G + +T Y H + +D + + + + D P++ +
Sbjct: 424 REMSQR--GLVGNTVT-YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480
Query: 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
+G ++ VFE S+ P Y ++EG
Sbjct: 481 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 514
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 59/146 (40%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E ++R N Y T++ R + V+ M+ DGV P +++L+ G K
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+L+ + ++ + P + YN +I K + +F + VKP+ Y
Sbjct: 485 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYN 544
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
+++ G + A+ R M G
Sbjct: 545 TMISGFCRKGLKEEADALFRKMREDG 570
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N YNT++ L + V++ + ++PT ++ +I G K +++D +
Sbjct: 469 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 528
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQT 148
+ G PDV +YN +IS G C+ ++A +F +M++ P+ T
Sbjct: 529 CSLSLKGVKPDVIIYNTMIS--GFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 134/348 (38%), Gaps = 26/348 (7%)
Query: 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167
LP + +N L+S K K D I + E+M++ + N TY L+N Q+ A
Sbjct: 82 LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 168 IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227
++ M G + L+ + + R D + ++VE G+ + +
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHG-KRISDAVALVDQMVEM--GYRPDTITFTTLIH 198
Query: 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDR 287
+ +K V R G L+T Y V + + D+ LL ++ +
Sbjct: 199 GLFLHNKASEAVALVDRMVQR--GCQPNLVT-YGVVVNGLCKRGDIDLAFNLLNKMEAAK 255
Query: 288 KSPDVYI---VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
+V I V+ ++ Y H D N +F + P Y++L+ + Y +
Sbjct: 256 IEANVVIYSTVIDSLCKYRHEDDALN---LFTEMENKGVRPNVITYSSLIS-CLCNY--E 309
Query: 345 GMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPA 404
A L +M R I +P + + L+ A K G A ++D M R I P +
Sbjct: 310 RWSDASRLLSDMIERKI--NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367
Query: 405 VEAYYNG--LKDREVPADDPRLVVVSR-------AYDNLLRGRPGAVR 443
+ NG + DR A +++S+ Y+ L+ G A R
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E R + YNT+++ +++ D+M+ G++P + LI G
Sbjct: 542 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 601
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
+++++ F D K NG LPDV Y+ +I C K + +++ F+EM V+PN Y
Sbjct: 602 NKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVY 661
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
L+ A +G+L + DM G + Y LI
Sbjct: 662 NHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%)
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
++ +D+MM VQP +++ LI + RL R+ MK G P+ A Y LI
Sbjct: 643 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 702
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
++A +FEEM+ ++PN Y L++ GQ+ V ++R+M + +
Sbjct: 703 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPN 762
Query: 181 KFCYAGLITAH 191
K Y +I +
Sbjct: 763 KITYTVMIGGY 773
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 38 ANNASEYNTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
A N +NTV+ L R+ F+ ++ M+ G++PT + L+ G + R+ D
Sbjct: 305 APNVVTFNTVIDGLGMCGRYDEAFMFKE---KMVERGMEPTLITYSILVKGLTRAKRIGD 361
Query: 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
+F +M GF P+V VYN LI + + ++AI I + M + TY L+
Sbjct: 362 AYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 421
Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
GQ D ++++M + G +++ + +I
Sbjct: 422 GYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 455
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Query: 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
N ++TSL F + +D ++ GV P LF + I KG ++++ +M+
Sbjct: 243 NILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE 301
Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
G P+V +N +I G C D+A E+M + ++P TY L+ A ++
Sbjct: 302 AGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGD 361
Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
Y ++++MT G + Y LI + + + A +I +L+ SKG S ++ N
Sbjct: 362 AYFVLKEMTKKGFPPNVIVYNNLIDSFIE--AGSLNKAIEIKDLM-VSKGLSLTSSTYN 417
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 6/170 (3%)
Query: 19 GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
G+ FF +E +N N YN ++ + R + ++ +DM G+ P
Sbjct: 642 GQEFF------DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 695
Query: 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
+ SLI G SR+++ ++M+ G P+V Y LI GK + + EM
Sbjct: 696 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 755
Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
V PN TY ++ A G + ++ +M G D Y I
Sbjct: 756 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 805
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E +R + Y+ ++ L + + +DD +G+ P + +I G K
Sbjct: 577 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKA 636
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
R ++ F D+M + P+ VYN+LI + A+ + E+MK + PN TY
Sbjct: 637 ERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATY 696
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
L+ + +++ + +M G + F Y LI +
Sbjct: 697 TSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 738
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
++ M GV P F+++I G R + F F+++M G P + Y+ L+
Sbjct: 295 LFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLT 354
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
+ K A + +EM K PN Y L+++ AG L+ I M + G L
Sbjct: 355 RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS 414
Query: 183 CYAGLITAHTNKIPRADDTATKIIELV 209
Y LI + K +AD+ + E++
Sbjct: 415 TYNTLIKGYC-KNGQADNAERLLKEML 440
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 64/158 (40%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E RN + T+++ L + +++ + G ++L+ G +
Sbjct: 473 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAG 532
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+L + F + ++ G + D YN LIS C K D+A +EM K +KP+ TY
Sbjct: 533 KLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS 592
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
L+ +++ D G D + Y+ +I
Sbjct: 593 ILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMI 630
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 58 FLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
+L DV+ + G+ P++ + L+ ++ + Q D + G PDV ++
Sbjct: 221 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV-CKGVSPDVYLFTTA 279
Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
I+ K ++A+++F +M++ V PN T+ +++ G+ D + M G
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339
Query: 178 GLDKFCYAGLITAHT 192
Y+ L+ T
Sbjct: 340 EPTLITYSILVKGLT 354
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 143/337 (42%), Gaps = 9/337 (2%)
Query: 2 RLLQSIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
R L SI+ +K + A ++F + + E+ R ++N YN ++ + + L
Sbjct: 5 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
+ MM G +P+ SL+ G G R+ D DQM G+ PD + LI
Sbjct: 65 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
+ +A+ + + M + +PN TY ++N G +D + ++ M AA D
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
+ +I + K DD E+ ++KG + ++ + + + +
Sbjct: 185 VVIFNTIIDSLC-KYRHVDDALNLFKEM--ETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241
Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
++ + ++ ++ L ++ A E K V+A + +M+K+ PD++ I
Sbjct: 242 LLSDMIEKK---INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR-SIDPDIFTYNSLI 297
Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
+ +D ++FE + + FP + Y TL++G
Sbjct: 298 NGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG 334
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
++ +R+ + YN+++ R + +++ M+ P D +++LI G K
Sbjct: 279 DDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKS 338
Query: 90 SRLQD-TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
R++D T FR +M G + D Y LI + D A ++F++M V P+ T
Sbjct: 339 KRVEDGTELFR-EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 397
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
Y LL+ G+L+ + M + LD + Y +I K + DD
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC-KAGKVDD 448
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N +N ++ + + +F ++DDM+ + P ++SLI G RL
Sbjct: 254 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMF 313
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+ M + PD+ YN LI K K + +F EM + + TY L+
Sbjct: 314 EFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 373
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
G D + + M + G D Y+ L+ N
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 407
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 64/161 (39%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E + R + Y T++ L + V+ M+ DGV P + L+ G
Sbjct: 350 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+L+ D M+ + D+ +Y +I K D +F + VKPN TY
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 469
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
+++ + L YA+++ M G D Y LI AH
Sbjct: 470 TMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E + N Y+++++ L S R+ + DM+ + P F++LI +K
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
+ + D M PD+ YN LI+ G C + D+A ++FE M + P+
Sbjct: 269 GKFVEAEKLHDDMIKRSIDPDIFTYNSLIN--GFCMHDRLDKAKQMFEFMVSKDCFPDLD 326
Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
TY L+ + +++ + R+M+ G D Y LI
Sbjct: 327 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 132/337 (39%), Gaps = 21/337 (6%)
Query: 3 LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
L+ ++ H+K+ A + +R N Y VV L + L +
Sbjct: 121 LIHGLFLHNKASEAV---------ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFN 171
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC 121
+ + M ++ +F+++I K + D +M+ G P+V Y+ LIS +C
Sbjct: 172 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 231
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
+ SD A ++ +M + ++ PN T+ L++A G+ + DM D
Sbjct: 232 SYGRWSD-ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDI 290
Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
F Y LI + D A ++ E + + ++T + E+ L
Sbjct: 291 FTYNSLINGFC--MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL- 347
Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNI 299
E HR G + +T Y D + + + + D PD+ Y ++ +
Sbjct: 348 FREMSHR--GLVGDTVT-YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404
Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
C ++G ++ +VF+ SE +Y T++EG
Sbjct: 405 LC--NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y+ ++ L + + +V+D M ++ ++ ++I G K ++ D + +
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 457
Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
G P+V YN +IS +C K + +A + ++MK+ P+ TY L+ A G
Sbjct: 458 LKGVKPNVVTYNTMISGLCSK-RLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDK 516
Query: 163 DPVYAIVRDMTAA 175
++R+M +
Sbjct: 517 AASAELIREMRSC 529
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 118/319 (36%), Gaps = 14/319 (4%)
Query: 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
Y N YNT++ L ++ D+ + M DG+ P ++SLI G R D
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
M PDV +N LI C K +A +EEM + + P+ TY L+
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
+LD + M + G D Y+ LI + K + + E+ ++
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC-KSKKVEHGMKLFCEMSQRG---- 356
Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL--LTVYHVAFHACAELKDVQ 274
N ++ L AE + RR F + Y+V H + ++
Sbjct: 357 ---VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Query: 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334
+L ++K+ D+ IR +G++ + ++ C P Y T+
Sbjct: 414 KALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTM- 472
Query: 335 EGAMFGYTPKGMQLAQDTL 353
M G KG++ D L
Sbjct: 473 ---MLGLYKKGLRREADAL 488
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%)
Query: 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
+N N ++ + L M+ G +P+ F SL+ G +G R+ D +
Sbjct: 114 HNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYM 173
Query: 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
DQM G+ P+V +YN +I K K D A+ + M+K + P+ TY L++ +
Sbjct: 174 FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS 233
Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
+G+ +V MT D F + LI A
Sbjct: 234 SGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/279 (18%), Positives = 115/279 (41%), Gaps = 16/279 (5%)
Query: 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
++++ ++++++ +++ ++ +++ M + G+ + L+ + S+L F +
Sbjct: 82 ADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGK 141
Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
M G P + + L++ G C+ A+ +F++M KPN Y +++ +
Sbjct: 142 MIKLGHEPSIVTFGSLLN--GFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKS 199
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
Q+D ++ M G G D Y LI+ + +D AT+++ + + + + V
Sbjct: 200 KQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD--ATRMVSCMTKREIYPDVF 257
Query: 220 TSG---NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
T + E EE Y E + RR L + Y + + +
Sbjct: 258 TFNALIDACVKEGRVSEAEEFY-----EEMIRRS--LDPDIVTYSLLIYGLCMYSRLDEA 310
Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
E + + PDV I Y S +++G K+F
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 5/157 (3%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E ++R N Y ++ + + +++ M+ GV P ++ L+ G
Sbjct: 351 EMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNG 410
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQT 148
+++ M+ NG D+ YN +I G CK + A I+ + + P+ T
Sbjct: 411 KIEKALVILADMQKNGMDADIVTYNIIIR--GMCKAGEVADAWDIYCSLNCQGLMPDIWT 468
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
Y ++ G A+ R M G L CY
Sbjct: 469 YTTMMLGLYKKGLRREADALFRKMKEDGI-LPNECYV 504
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
D FF Q + LP +A ++ L+S K K D I ++E+M+ + N T LL
Sbjct: 67 DLFFHMVQCRP---LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILL 123
Query: 154 NACAAAGQLDPVYAIVRDMTAAG 176
N QL + + M G
Sbjct: 124 NCFCRCSQLSLALSFLGKMIKLG 146
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 3/188 (1%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E++ + A YNT++ + QR F + V M DGV + + L+ ++K
Sbjct: 248 KEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKN 307
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
++ D D+M+ G DV VY LIS + N +A +F+E+ + + P+ TY
Sbjct: 308 GKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTY 367
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
L++ G++ ++ +M + G + + + LI + K D A+ I +++
Sbjct: 368 GALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRK--GMVDEASMIYDVM 425
Query: 210 EQSKGWSS 217
EQ KG+ +
Sbjct: 426 EQ-KGFQA 432
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
+ ++ +M GVQP ++ +I K ++++ R M+ANG PD Y LI
Sbjct: 489 KRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIH- 547
Query: 121 CGKC--KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178
G+C N D+A+R+F EM + N TY +++ + AG+ D + + +M G
Sbjct: 548 -GECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYT 606
Query: 179 LDKFCYAGLI 188
+D Y LI
Sbjct: 607 IDNKVYTALI 616
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 19 GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
+R FV E + + NA YN ++ + Q + R + +M +G+ P
Sbjct: 488 AKRLFV------EMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYT 541
Query: 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
+ SLI G + + +M G + Y +IS K SD+A +++EMK
Sbjct: 542 YTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMK 601
Query: 139 KYEVKPNGQTYVCLLNA 155
+ + + Y L+ +
Sbjct: 602 RKGYTIDNKVYTALIGS 618
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 57/141 (40%)
Query: 54 QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113
+RR L +++ M+ GV+ T ++ G + ++ + + G P+
Sbjct: 202 RRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYT 261
Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
YN +I+ K ++ + + MKK V N TY L+ G++ + +M
Sbjct: 262 YNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMR 321
Query: 174 AAGAGLDKFCYAGLITAHTNK 194
G D Y LI+ + K
Sbjct: 322 ERGIESDVHVYTSLISWNCRK 342
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
Query: 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
NT+ + +R+ + MM GV+ + + +LI K +++ +M +
Sbjct: 438 NTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSS 497
Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
G P+ YN +I K +A ++ M+ + P+ TY L++ A +D
Sbjct: 498 KGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDE 557
Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
+ +M G + Y +I+ + K ++D+
Sbjct: 558 AMRLFSEMGLKGLDQNSVTYTVMISGLS-KAGKSDE 592
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 18/278 (6%)
Query: 20 RRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF 79
+RFF GA AR YN ++ + + R ++++M G+ P +
Sbjct: 247 KRFFKDMIGAG--ARPT----VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTY 300
Query: 80 HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
+S+I G K RL DT F ++MK PDV YN LI+ K + + EMK
Sbjct: 301 NSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG 360
Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
+KPN +Y L++A G + DM G +++ Y LI A+ KI
Sbjct: 361 NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC-KIGNLS 419
Query: 200 DTATKIIELVEQSKGWSSVETSG---NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256
D E+++ W+ V + + E M ++E + TA +
Sbjct: 420 DAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN-------- 471
Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
L Y+ H + K++ LL LK PD+ +
Sbjct: 472 LASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLL 509
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%)
Query: 65 DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
++M+ GV+ + +LI G R+++ +M G +P++A YN LI K
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 485
Query: 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
KN D+A+ + E+K +KP+ Y + + +++ ++ +M G + Y
Sbjct: 486 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545
Query: 185 AGLITAH 191
L+ A+
Sbjct: 546 TTLMDAY 552
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y ++ L R +++ M GV P +++LI G +K +
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 495
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+++K G PD+ +Y I + + A + EMK+ +K N Y L++A +
Sbjct: 496 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555
Query: 160 GQ 161
G
Sbjct: 556 GN 557
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y+T+V + + Y DM G+ P + SLI K L D F
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 425
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
++M G +V Y LI + +A +F +M V PN +Y L++ A
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 485
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
+D ++ ++ G D Y I
Sbjct: 486 KNMDRALELLNELKGRGIKPDLLLYGTFI 514
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
N +P V++ L SV ++AI+ F +MK++ V P ++ LL+ A G+ D
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 245
Query: 165 VYAIVRDMTAAGAGLDKFCYAGLI 188
V +DM AGA F Y +I
Sbjct: 246 VKRFFKDMIGAGARPTVFTYNIMI 269
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 50/124 (40%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
NA+ + ++ L + +++ M+ G+ P R + SL+ G K + + R
Sbjct: 612 NAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALR 671
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
D+M G D+ Y L+ C +A EEM + P+ + +L
Sbjct: 672 DKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 731
Query: 160 GQLD 163
G +D
Sbjct: 732 GCID 735
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%)
Query: 71 GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
G+Q +F ++I G K ++++ +QM G +PD Y L+ K N +A
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667
Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
+ + ++M + +K + Y L+ + QL + + +M G D+ ++
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKK 727
Query: 191 H 191
H
Sbjct: 728 H 728
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/116 (17%), Positives = 52/116 (44%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N + YN ++ + ++ +++ G++P L+ + I G +++
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM 530
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
++MK G + +Y L+ K N + + + +EMK+ +++ T+ L++
Sbjct: 531 NEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 586
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 21/206 (10%)
Query: 18 LGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMML-------- 69
L +FF S R + ++ Y V L R ++ V +M+L
Sbjct: 124 LAFKFFKWSM-----TRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVF 178
Query: 70 DGVQPTRDL-------FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
D + TR++ F +L + L++ +MK P N L+
Sbjct: 179 DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFA 238
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182
K +D R F++M +P TY +++ G ++ + +M G D
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTV 298
Query: 183 CYAGLITAHTNKIPRADDTATKIIEL 208
Y +I K+ R DDT E+
Sbjct: 299 TYNSMIDGF-GKVGRLDDTVCFFEEM 323
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 39/355 (10%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVC 121
V+++M L G + + LI G R+ + +MK + P V Y LI S+C
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLC 334
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
G + S +A+ + +EM++ +KPN TY L+++ + + + ++ M G +
Sbjct: 335 GSERKS-EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-----SGNNAEN--EMMGVSK 234
Y LI + + D A ++EL+E K + T G N + MGV
Sbjct: 394 ITYNALINGYCKRGMIED--AVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLN 451
Query: 235 EELYNLPTAEYVH---------RRGGFLS--RLLTV------------YHVAFHACAELK 271
+ L + V R G F S RLL++ Y + + K
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSK 511
Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
V+ L + L++ +P+V + I Y +G +D H + E + P + +
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFN 571
Query: 332 TLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386
L+ G K L ++ +V I L P + +D +L+ K G + A
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMV-----KIGLQPTVSTDTILIHRLLKDGDFDHA 621
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 164/407 (40%), Gaps = 54/407 (13%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y ++ SL R ++ +M G++P + LI + + QM
Sbjct: 326 YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQML 385
Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTY------VCLLNA 155
G +P+V YN LI+ G CK + A+ + E M+ ++ PN +TY C N
Sbjct: 386 EKGLMPNVITYNALIN--GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV 443
Query: 156 CAAAGQLDPVY--AIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD--------TATKI 205
A G L+ + ++ D+ + +D C +G + + +D T T +
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503
Query: 206 IELVEQSKG-------WSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258
I+ + +SK + S+E G N N +M + + Y A V L ++L+
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNP-NVVMYTALIDGY--CKAGKVDEAHLMLEKMLS 560
Query: 259 --------VYHVAFHA-CAELKDVQAMETLL-EMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
++ H CA+ K +A TLL E + K P V I L GD
Sbjct: 561 KNCLPNSLTFNALIHGLCADGKLKEA--TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQL-AQDTLVNMNSRNIFLSPRM 367
D+ + F+ + S P A Y T ++ Y +G L A+D + M + SP
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQ----TYCREGRLLDAEDMMAKMRENGV--SP-- 670
Query: 368 GSDLLLVAAGEKS-GGYTTANYIWDLMQARKITPSLPAVEAYYNGLK 413
DL ++ K G N+ +D+++ + T P+ + + +K
Sbjct: 671 --DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/403 (22%), Positives = 151/403 (37%), Gaps = 55/403 (13%)
Query: 1 MRLLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFL- 59
+RLL + + SVG AL +E Y YNT++ SL RF L
Sbjct: 145 IRLL--MIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLA---RFGLV 199
Query: 60 --LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117
++ VY +M+ D V P ++ ++ G K +++ + ++ G PD Y L
Sbjct: 200 DEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSL 259
Query: 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
I + K+ D A ++F EM + N Y L++ A ++D + M
Sbjct: 260 IMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK---- 315
Query: 178 GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
D C+ + T T +I+ G+ ++E + + KE
Sbjct: 316 --DDECFPTV------------RTYTVLIK-----------SLCGSERKSEALNLVKE-- 348
Query: 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQ 297
G + T + C++ K +A E L +ML+K P+V
Sbjct: 349 ---------MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLM-PNVITYNA 398
Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357
I Y G I++ V E + P Y L++ GY + A L M
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK----GYCKSNVHKAMGVLNKML 454
Query: 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400
R + P + + L+ +SG + +A + LM R + P
Sbjct: 455 ERKVL--PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 21/259 (8%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
E+ +N N+ +N ++ L + + + + M+ G+QPT LI +K
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKD 615
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
+ QM ++G PD Y I + A + +M++ V P+ TY
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK----- 204
L+ GQ + + +++ M G + + LI H ++ ++
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI-KHLLEMKYGKQKGSEPELCA 734
Query: 205 ---------IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH---RRGGF 252
++EL+E+ SV + + E ++G+ E+ NL AE V +R
Sbjct: 735 MSNMMEFDTVVELLEKMVE-HSVTPNAKSYEKLILGIC--EVGNLRVAEKVFDHMQRNEG 791
Query: 253 LSRLLTVYHVAFHACAELK 271
+S V++ C +LK
Sbjct: 792 ISPSELVFNALLSCCCKLK 810
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-G 106
+ ++++ F + ++ + M+ V P + LI+G + L+ D M+ N G
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791
Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
P V+N L+S C K K ++A ++ ++M P ++ L+ G+ +
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGT 851
Query: 167 AIVRDMTAAGAGLDKFCYAGLI 188
++ +++ G D+ + +I
Sbjct: 852 SVFQNLLQCGYYEDELAWKIII 873
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 1/160 (0%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMML-DGVQPTRDLFHSLIVGTMK 88
E+ + NA Y ++ + + V+D M +G+ P+ +F++L+ K
Sbjct: 749 EKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808
Query: 89 GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
+ + D M G LP + LI K ++ +F+ + + +
Sbjct: 809 LKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELA 868
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
+ +++ G ++ Y + M G Y+ LI
Sbjct: 869 WKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 121/310 (39%), Gaps = 45/310 (14%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK- 88
+E RR N +N V+ +L + RDV +DM + G P +++LI G K
Sbjct: 212 KEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKL 271
Query: 89 --GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146
++ +M N P++ +N LI K N ++++F+EM +VKPN
Sbjct: 272 GGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNV 331
Query: 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
+Y L+N G++ ++ M +AG + Y LI +D + +
Sbjct: 332 ISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFC-----KNDMLKEAL 386
Query: 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266
++ KG +V T+ +Y++ A
Sbjct: 387 DMFGSVKGQGAVPTT------------------------------------RMYNMLIDA 410
Query: 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326
+L + L E ++++ PDV I +G+I+ K+F D + S+ P
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF-DQLTSKGLPD 469
Query: 327 AELYATLVEG 336
+ L+EG
Sbjct: 470 LVTFHILMEG 479
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 4/172 (2%)
Query: 21 RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
+ + A +E + + N + +N ++ V+ +M+ V+P ++
Sbjct: 276 KMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYN 335
Query: 81 SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMK 138
SLI G G ++ + RD+M + G P++ YN LI+ G CKN +A+ +F +K
Sbjct: 336 SLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALIN--GFCKNDMLKEALDMFGSVK 393
Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
P + Y L++A G++D +A+ +M G D Y LI
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAG 445
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 65 DDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124
++M +G+ P ++ LI G + ++ DQ+ + G LPD+ ++ L+ G C
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILME--GYC 481
Query: 125 KN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
+ S +A + +EM K +KP TY ++ G L
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 82 LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
L++ +K +R D + +M P+V +N +I+ K ++A + E+MK Y
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253
Query: 142 VKPNGQTYVCLLNACAAAGQLDPVY---AIVRDMT 173
PN +Y L++ G +Y A++++M
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH- 191
+++EM + +++PN T+ ++NA G+++ ++ DM G + Y LI +
Sbjct: 210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269
Query: 192 ----TNKIPRADDTATKIIE 207
K+ +AD +++E
Sbjct: 270 KLGGNGKMYKADAVLKEMVE 289
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/324 (19%), Positives = 138/324 (42%), Gaps = 9/324 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y T++ ++T Q+++ + + ++ G + F+++I + ++D +MK
Sbjct: 83 YTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMK 142
Query: 104 ANGFLPDVAVYNYLIS---VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
G P + YN LI + GK + S + + + E +V PN +T+ L+ A
Sbjct: 143 ELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKK 202
Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
+++ + +V+ M G D Y + T + K +T E+VE+ +
Sbjct: 203 KVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQK----GETVRAESEVVEKMVMKEKAKP 258
Query: 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGF-LSRLLTVYHVAFHACAELKDVQAMETL 279
+G + G +E +V R + L V++ + E+ D ++ +
Sbjct: 259 NGRTCGIVVGGYCREGRVR-DGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEV 317
Query: 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339
L ++K+ DV + + +G ++ +VF++ + + P A Y+ L +G +
Sbjct: 318 LTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVR 377
Query: 340 GYTPKGMQLAQDTLVNMNSRNIFL 363
PK + +TL+ + N+ +
Sbjct: 378 AKEPKKAEELLETLIVESRPNVVI 401
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM------KGSRLQDTFF 97
Y+TV+ + +S V+ +M+ GV+P + L G + K L +T
Sbjct: 333 YSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKKAEELLETLI 392
Query: 98 FRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLL 153
+ P+V ++ +IS G C N D A+R+F +M K+ V PN +T+ L+
Sbjct: 393 VESR-------PNVVIFTTVIS--GWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLM 441
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 96/437 (21%), Positives = 174/437 (39%), Gaps = 54/437 (12%)
Query: 13 SVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72
+V G +G + ++ E+ A +A YNT++T V+++M G
Sbjct: 251 NVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGF 310
Query: 73 QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132
+ +++L+ K R ++ ++M NGF P + YN LIS + D+A+
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370
Query: 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
+ +M + KP+ TY LL+ AG+++ +I +M AG + + I +
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYG 430
Query: 193 NKIPRADDTATKIIELVEQSK---------GWSSVET--SGNNAENEMMGVSKE------ 235
N+ T+++++ ++ W+++ N ++E+ GV KE
Sbjct: 431 NR-----GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 485
Query: 236 ----ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD---RK 288
E +N + Y R G + +TVY A D+ T+L L + +
Sbjct: 486 VPERETFNTLISAY--SRCGSFEQAMTVYRRMLDAGVT-PDLSTYNTVLAALARGGMWEQ 542
Query: 289 SPDVYIVMQNIRC-------------YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
S V M++ RC Y + +I H + E+ P A L TLV
Sbjct: 543 SEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLV- 601
Query: 336 GAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
+ + A+ + R SP + + +V+ + AN + D M+
Sbjct: 602 --LVCSKCDLLPEAERAFSELKERG--FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKE 657
Query: 396 RKITPSLPAVEAYYNGL 412
R TPS+ A YN L
Sbjct: 658 RGFTPSM----ATYNSL 670
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL--IVGTMKGSRLQDTFFFRDQ 101
Y +++++ + R+ +V+ M DG +PT ++ + + G M G+ ++
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKM-GTPWNKITSLVEK 269
Query: 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
MK++G PD YN LI+ C + +A ++FEEMK + TY LL+ + +
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329
Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
++ +M G Y LI+A+
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAY 359
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 19 GRRFFVTSA-GAEEYAR-RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR 76
GRR V A G +Y + R + + + YN+++ + F ++ +++ G++P
Sbjct: 640 GRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDI 699
Query: 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEE 136
++++I + +R++D +M+ +G +PDV YN I ++AI +
Sbjct: 700 ISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRY 759
Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
M K+ +PN TY +++ + D V D+
Sbjct: 760 MIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 137/359 (38%), Gaps = 16/359 (4%)
Query: 47 VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
+++ L + R ++++ + DG + SLI R ++ +M+ +G
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 107 FLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165
P + YN +++V GK ++ + E+MK + P+ TY L+ C
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298
Query: 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225
+ +M AAG DK Y L+ + K R + + E+V S V + +
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVY-GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 226 ENEMMGVSKE--ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
G+ E EL N AE + F Y V++ ++ E +
Sbjct: 358 AYARDGMLDEAMELKN-QMAEKGTKPDVF------TYTTLLSGFERAGKVESAMSIFEEM 410
Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343
+ P++ I+ Y + G K+F++ P + TL+ A+FG
Sbjct: 411 RNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL--AVFGQN- 467
Query: 344 KGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
GM + R F+ R + L++A + G + A ++ M +TP L
Sbjct: 468 -GMDSEVSGVFKEMKRAGFVPERETFN-TLISAYSRCGSFEQAMTVYRRMLDAGVTPDL 524
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 1/170 (0%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E R ++ + + N++V+ ++ V D M G P+ ++SL+ + +
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+ ++ A G PD+ YN +I + A RIF EM+ + P+ TY
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYN 738
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
+ + AA + +VR M G ++ Y ++ + K+ R D+
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYC-KLNRKDE 787
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 69/152 (45%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y +++ + + + L+ + +++ ++P L +L++ K L +
Sbjct: 558 NELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAF 617
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
++K GF PD+ N ++S+ G+ + +A + + MK+ P+ TY L+ + +
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRS 677
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
I+R++ A G D Y +I A+
Sbjct: 678 ADFGKSEEILREILAKGIKPDIISYNTVIYAY 709
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 6/173 (3%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
++ V+ L + + V+++M+ G +P ++ LI G K ++D +M
Sbjct: 330 FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMI 389
Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
GF PDV Y+ +++ G CKN ++A+ F + + N Y L++ AG+
Sbjct: 390 DEGFKPDVVTYSVVVN--GLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGR 447
Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKG 214
+D + +M+ G D +CY LI A T R D A + + +E+ +G
Sbjct: 448 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH--RKVDEAIALFKRMEEEEG 498
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%)
Query: 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
++ Y +N Y ++V L + +R V ++ T ++LI K ++
Sbjct: 145 QKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVE 204
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
+ + +MK NG P + YN+L++ D A R+FE M+ +KP+ TY ++
Sbjct: 205 ELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMI 264
Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
AGQ +RDM G DK Y +I A
Sbjct: 265 KGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQA 301
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 3/158 (1%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y+ VV L R D + DG+ + SLI G K R+ + ++M
Sbjct: 400 YSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS 459
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
G D YN LI K + D+AI +F+ M++ E TY LL+ +
Sbjct: 460 EKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRN 519
Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
+ + M G C+ L T + K+ RA
Sbjct: 520 EEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARA 557
Score = 38.9 bits (89), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 4/154 (2%)
Query: 23 FVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL 82
FV+S E + + S N ++ S L V+ M +G++PT ++ L
Sbjct: 173 FVSS----EIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFL 228
Query: 83 IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
+ G + + + M++ PD+ YN +I K + +A+ +M+
Sbjct: 229 MNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGH 288
Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
+ + TY+ ++ AC A A+ ++M G
Sbjct: 289 EADKITYMTMIQACYADSDFGSCVALYQEMDEKG 322
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/148 (18%), Positives = 58/148 (39%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN ++ L S V++ M ++P ++++I G K + Q M+
Sbjct: 225 YNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDME 284
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G D Y +I C + + +++EM + ++ + ++ G+L+
Sbjct: 285 TRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLN 344
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
Y + +M G+ + Y LI +
Sbjct: 345 EGYTVFENMIRKGSKPNVAIYTVLIDGY 372
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 94/243 (38%), Gaps = 12/243 (4%)
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
FF K + ++ Y L+ V K+ D+ + E+KK+E L+ +
Sbjct: 138 FFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSF 197
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
G ++ + + R M G + Y L+ + + D+A ++ E++E +
Sbjct: 198 GKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAM--FVDSAERVFEVMESGRIKP 255
Query: 217 SVETSGNNAENEM-MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
+ T + G +++ + L E RG ++ Y AC D +
Sbjct: 256 DIVTYNTMIKGYCKAGQTQKAMEKLRDME---TRGHEADKI--TYMTMIQACYADSDFGS 310
Query: 276 METLLEML--KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333
L + + K + P + ++ C G ++ G+ VFE+ I P +Y L
Sbjct: 311 CVALYQEMDEKGIQVPPHAFSLVIGGLC--KEGKLNEGYTVFENMIRKGSKPNVAIYTVL 368
Query: 334 VEG 336
++G
Sbjct: 369 IDG 371
>sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570
OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
Length = 805
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
V+D++ + G +P + LI G K R+ D +M+ NGF+PD VYN L+
Sbjct: 311 VWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTL 370
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-- 180
K + +A ++FE+M + V+ + TY L++ G+ + + + D+ G +D
Sbjct: 371 KARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAI 430
Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
F GL K+ + A K++E +E ++G+S
Sbjct: 431 TFSIVGLQLCREGKL----EGAVKLVEEME-TRGFS 461
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN++++S + F R V D M + ++ +I G K R D++
Sbjct: 633 YNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRLT 692
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G D+ +YN LI+ GK D+A ++F+ MK + P+ +Y ++ + AG+L
Sbjct: 693 KQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLK 752
Query: 164 PVYAIVRDMTAAGA 177
Y ++ M AG
Sbjct: 753 EAYKYLKAMLDAGC 766
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Query: 8 YRHHKSVGGALGRRFFVTSAGAEEYARRNY-ANNASEYNTVVTSLTSQRRFFLLRDVYDD 66
Y ++ + + + +F T+ G + N+ A + + YN ++ L R L V D
Sbjct: 631 YTYNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDR 690
Query: 67 MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
+ G ++++LI K +RL + D MK+NG PDV YN +I V K
Sbjct: 691 LTKQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGK 750
Query: 127 SDQAIRIFEEMKKYEVKPNGQT 148
+A + + M PN T
Sbjct: 751 LKEAYKYLKAMLDAGCLPNHVT 772
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
++SLI + +D D++K +G PD + Y LI C K D A+RI+ EM+
Sbjct: 292 YNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQ 351
Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
P+ Y CLL+ A ++ + M G + Y LI
Sbjct: 352 YNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILI 401
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
R + + F PD+ YN LI V + A+ +++E+K +P+ TY L+ C
Sbjct: 277 RSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCK 336
Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKIIELVEQSKGWS 216
+ ++D I +M G D Y L+ T K+ A K+++ ++ W+
Sbjct: 337 SYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWT 396
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%)
Query: 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138
++S++ +K Q DQM N D+A YN +I GK +D A + + +
Sbjct: 633 YNSMMSSFVKKGYFQTARGVLDQMFENFCAADIATYNVIIQGLGKMGRADLASAVLDRLT 692
Query: 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192
K + Y L+NA A +LD + M + G D Y +I ++
Sbjct: 693 KQGGYLDIVMYNTLINALGKATRLDEATQLFDHMKSNGINPDVVSYNTMIEVNS 746
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/159 (18%), Positives = 63/159 (39%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E + + S Y ++ R +Y +M +G P +++ L+ GT+K
Sbjct: 313 DELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKA 372
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
++ + ++M G YN LI + ++ +F ++KK + T+
Sbjct: 373 RKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITF 432
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
+ G+L+ +V +M G +D + L+
Sbjct: 433 SIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLL 471
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Query: 44 YNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
YNTV+ +L S+ + +D M D V P+ + LI G K +R++ ++M
Sbjct: 376 YNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEM 435
Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
GF P A Y LI+ GK K + A +F+E+K+ + + Y ++ G+L
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKL 495
Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITA 190
+ +M G+G D + Y L++
Sbjct: 496 SEAVDLFNEMKNQGSGPDVYAYNALMSG 523
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 15/237 (6%)
Query: 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
D++++M G PT + LI G K R+ + + F M +G PDV N L+++
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNIL 348
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIVRDMTAAGAGLD 180
GK ++ +F EM + P +Y ++ A + + V + M A
Sbjct: 349 GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408
Query: 181 KFCYAGLITAH--TNKIPRADDTATKIIELVEQ--SKGWSSVETSGNNAENEMMGVSKEE 236
+F Y+ LI + TN++ +A + L+E+ KG+ + + N + + E
Sbjct: 409 EFTYSILIDGYCKTNRVEKA-------LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461
Query: 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY 293
N E G SR+ V F C +L +A++ EM K PDVY
Sbjct: 462 AANELFKELKENFGNVSSRVYAVMIKHFGKCGKLS--EAVDLFNEM-KNQGSGPDVY 515
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%)
Query: 17 ALGRRFFVTSAGAEEYAR--RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQ 73
ALGR V+ A + Y R +S YN+V+ L + + + +VY +M +G
Sbjct: 171 ALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCF 230
Query: 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
P + +LI K R D+MK N P +Y L+ + K ++A+ +
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDL 290
Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
FEEMK+ P TY L+ AG++D Y +DM G D
Sbjct: 291 FEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD 337
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Query: 34 RRNYANNASE-YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
+ N+ N +S Y ++ + D++++M G P +++L+ G +K +
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMI 530
Query: 93 QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
+ +M+ NG D+ +N +++ + +AI +FE +K +KP+G TY L
Sbjct: 531 NEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTL 590
Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203
L A AG + ++R+M G D Y+ ++ A N DD ++
Sbjct: 591 LGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSS 641
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 10/265 (3%)
Query: 73 QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG-FLPDVAVYNYLISVCGKCKNSDQAI 131
+PT ++S+I+ M+ + + +M G PD Y+ LIS K +D AI
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
R+F+EMK ++P + Y LL G+++ + +M AG + Y LI
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKG- 312
Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK-EELYNLPTAEYVHRRG 250
K R D+ +++ G + NN N + V + EEL N+ + + R
Sbjct: 313 LGKAGRVDEAYGFYKDMLRD--GLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370
Query: 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310
+ TV F + A + +V + + +K D SP + I Y + ++
Sbjct: 371 PTVVSYNTVIKALFESKAHVSEVS---SWFDKMKADSVSPSEFTYSILIDGYCKTNRVEK 427
Query: 311 GHKVFEDYICSEKFPPA-ELYATLV 334
+ E+ + + FPP Y +L+
Sbjct: 428 ALLLLEE-MDEKGFPPCPAAYCSLI 451
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 1/162 (0%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
EE R + Y ++ L R Y DM+ DG+ P ++L+ K
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQT 148
R+++ +M P V YN +I + K + + F++MK V P+ T
Sbjct: 352 GRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT 411
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
Y L++ +++ ++ +M G Y LI A
Sbjct: 412 YSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA 453
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 114/300 (38%), Gaps = 64/300 (21%)
Query: 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
AV + L+ G+ K +A+ +F + K + KP TY ++ GQ + V+ + +
Sbjct: 163 AVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTE 222
Query: 172 MTAAGAGL-DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM 230
M G D Y+ LI+++ K+ R D I L ++ K +N M
Sbjct: 223 MCNEGDCFPDTITYSALISSY-EKLGRNDSA----IRLFDEMK------------DNCMQ 265
Query: 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP 290
E++Y + LL +Y ++ V+ L E +K+ SP
Sbjct: 266 PT--EKIY---------------TTLLGIYF-------KVGKVEKALDLFEEMKRAGCSP 301
Query: 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL---------VEGAMFGY 341
VY + I+ +G +D + ++D + P L VE +
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361
Query: 342 TPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS 401
+ GM T+V+ N+ ++ A E + + +D M+A ++PS
Sbjct: 362 SEMGMWRCTPTVVSYNT-------------VIKALFESKAHVSEVSSWFDKMKADSVSPS 408
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
++D+MM DG+QPT+ + SLI + ++ ++ +++ G PD+ + N L+ G
Sbjct: 419 LHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMD--G 476
Query: 123 KCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
C N D+A + +EM + P+ TY CL+ G+ + ++ +M G D
Sbjct: 477 HCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 536
Query: 181 KFCYAGLITAHTNK 194
Y LI+ ++ K
Sbjct: 537 HISYNTLISGYSKK 550
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
R +N +N ++ L + + + M + G++PT +++L+ G R++
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
+MK+ GF PD+ YN ++S +C N +A + EMK+ + P+ +Y L
Sbjct: 278 GARLIISEMKSKGFQPDMQTYNPILSWMC----NEGRASEVLREMKEIGLVPDSVSYNIL 333
Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
+ C+ G L+ +A +M G + Y LI NKI A+ +I E
Sbjct: 334 IRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE 390
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN ++ L + +F R++ +M G++P +++LI G K + F RD+M
Sbjct: 505 YNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
+ GF P + YN L+ K + + A + EMK + PN ++ ++ A
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEA 616
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 5/178 (2%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E + + + YN +++ + ++ R +V +M G+ P ++ LI G
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNG 341
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
L+ F +RD+M G +P YN LI + A + E+++ + + TY
Sbjct: 342 DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRADDTATKII 206
L+N G +A+ +M G +F Y LI NK AD+ K++
Sbjct: 402 ILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVV 459
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNT+V + + R R + +M G QP ++ ++ R + +MK
Sbjct: 263 YNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVL---REMK 319
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G +PD YN LI C + + A +EM K + P TY L++ +++
Sbjct: 320 EIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIE 379
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH 191
++R++ G LD Y LI +
Sbjct: 380 AAEILIREIREKGIVLDSVTYNILINGY 407
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 55 RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
R F LL+++ DMM + P ++ L+ G + ++ +MK G PD Y
Sbjct: 485 RAFSLLKEM--DMM--SINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISY 540
Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
N LIS K ++ A + +EM P TY LL + + + ++R+M +
Sbjct: 541 NTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKS 600
Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDT 201
G + + +I A +N + D+
Sbjct: 601 EGIVPNDSSFCSVIEAMSNLDAKKSDS 627
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 44 YNTVVTSLTSQRRF----FLLRDVYDD-MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
YNT++ L + + L+R++ + ++LD V ++ LI G + + F
Sbjct: 365 YNTLIHGLFMENKIEAAEILIREIREKGIVLDSVT-----YNILINGYCQHGDAKKAFAL 419
Query: 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
D+M +G P Y LI V + + +A +FE++ +KP+ L++ A
Sbjct: 420 HDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCA 479
Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
G +D ++++++M D Y L+
Sbjct: 480 IGNMDRAFSLLKEMDMMSINPDDVTYNCLM 509
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 60 LRDVYDDMML--DGVQPTRDLFHSLIVGTMKGSRLQD----TFFFRDQMKANGFLPDVAV 113
+R+++D+++L D ++ + L+V R+ D F+ MK GF P
Sbjct: 136 IRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFYL---MKEKGFYPKTET 192
Query: 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173
N+++++ + + A + +M + E+K N T+ ++N G+L + M
Sbjct: 193 CNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIME 252
Query: 174 AAG 176
G
Sbjct: 253 VFG 255
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 3/149 (2%)
Query: 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
N ++T L+ R Y DM ++ F+ +I K +L+ F M+
Sbjct: 194 NHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEV 253
Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
G P + YN L+ + A I EMK +P+ QTY +L+ G+
Sbjct: 254 FGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE 313
Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
V +R+M G D Y LI +N
Sbjct: 314 V---LREMKEIGLVPDSVSYNILIRGCSN 339
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 71 GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
G +P + +L+ G ++ D + M+ GF P+ Y LI K ++A
Sbjct: 282 GFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEA 341
Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
+++F EM++YE + + TY L++ G++D Y ++ DM G + Y ++ A
Sbjct: 342 MKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVA 401
Query: 191 HTNKIPRADDTATKIIELVEQSK 213
H K ++ + +EL+E+ +
Sbjct: 402 HEKK-----ESFEECLELMEKMR 419
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/421 (21%), Positives = 167/421 (39%), Gaps = 57/421 (13%)
Query: 15 GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
G LG RFFV +A + Y ++ Y ++V L+ R+F + + ++M + Q
Sbjct: 126 AGNLGYRFFVWAA-----KQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 180
Query: 75 TR-DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
+LF L+ ++ D+M GF PD V+ L+ K + A ++
Sbjct: 181 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 240
Query: 134 FEEMK--------------------------KYEV--------KPNGQTYVCLLNACAAA 159
FE+M+ KY + +P+ Y LL+ A A
Sbjct: 241 FEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANA 300
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
G++ Y ++RDM G + CY LI A K+ R ++ +E+ E+ + + V
Sbjct: 301 GKMADAYDLLRDMRRRGFEPNANCYTVLIQALC-KVDRMEEAMKVFVEM-ERYECEADVV 358
Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279
T ++ Y + + ++G S L ++ + H E + E
Sbjct: 359 TYTALVSGFCKWGKIDKCY--IVLDDMIKKGLMPSELTYMHIMVAHEKKE-----SFEEC 411
Query: 280 LEMLKKDRK---SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
LE+++K R+ PD+ I IR G++ +++ + + P + + ++
Sbjct: 412 LELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMIN- 470
Query: 337 AMFGYTPKGMQL-AQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395
G +G L A D M +R +F + G+ LL+ K A +W + +
Sbjct: 471 ---GLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITS 527
Query: 396 R 396
+
Sbjct: 528 K 528
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E RR Y+ + YNT++ + F ++ +M+ G+ P+ + SLI K
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+ F DQM+ G P+ Y L+ + ++A R+ EM P+ TY
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
L+N G+++ A++ DM G D Y+ +++
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 12/300 (4%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N YN V+ L + R + V +M G +++LI G K
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M +G P V Y LI K N ++A+ ++M+ + PN +TY L++ +
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
G ++ Y ++R+M G Y LI H + + A ++E +++ KG S
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHC--VTGKMEDAIAVLEDMKE-KGLSPDV 450
Query: 220 TSGNNAENEMMGVSKEELYNLPTAEYVHR---RGGFLSRLLTVYHVAFHACAELKDVQAM 276
S + + G + Y++ A V R G +T + C + + +A
Sbjct: 451 VSYSTV---LSGFCRS--YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
+ EML+ PD + I Y GD++ ++ + + P Y+ L+ G
Sbjct: 506 DLYEEMLRVGL-PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 44 YNTVV-TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
YN V+ ++ S+R +V+ +M+ V P ++ LI G + D+M
Sbjct: 172 YNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM 231
Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
+ G LP+V YN LI K + D ++ M ++PN +Y ++N G++
Sbjct: 232 ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM 291
Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
V ++ +M G LD+ Y LI +
Sbjct: 292 KEVSFVLTEMNRRGYSLDEVTYNTLIKGY 320
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 35 RNYANNASEYNTVVTSLTSQ----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
R N Y T+V + + + +LR++ D+ G P+ +++LI G
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN----GFSPSVVTYNALINGHCVTG 429
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+++D + MK G PDV Y+ ++S + + D+A+R+ EM + +KP+ TY
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
L+ + + +M G D+F Y LI A+
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 40 NASEYNTVVTSLTSQRR----FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
N YNT++ R+ F LLR M L G++P ++ +I G + R+++
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRS----MALKGLEPNLISYNVVINGLCREGRMKEV 294
Query: 96 FFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
F +M G+ D YN LI G CK N QA+ + EM ++ + P+ TY L+
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIK--GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLI 352
Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
++ AG ++ + M G ++ Y L+ + K
Sbjct: 353 HSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 147/365 (40%), Gaps = 27/365 (7%)
Query: 60 LRDVYDDMMLDGVQPTRDLFHS------LIVGTMKGSRLQDTFFFRDQM-KANGFLPDVA 112
L D Y ++ +Q T DL +S L+V + L D + +A+GF+P V
Sbjct: 111 LDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVL 170
Query: 113 VYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171
YN ++ + K N A +F+EM + +V PN TY L+ AG +D +
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230
Query: 172 MTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM- 230
M G + Y LI + K+ + DD K++ + KG S N N +
Sbjct: 231 METKGCLPNVVTYNTLIDGYC-KLRKIDD-GFKLLRSMAL-KGLEPNLISYNVVINGLCR 287
Query: 231 -GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRK 288
G KE + L ++RRG L + Y+ C E QA+ EML+
Sbjct: 288 EGRMKEVSFVLTE---MNRRGYSLDEV--TYNTLIKGYCKEGNFHQALVMHAEMLRHGL- 341
Query: 289 SPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQ 347
+P V I +G+++ + + P Y TLV+ G++ KG M
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVD----GFSQKGYMN 397
Query: 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEA 407
A L MN SP + + L+ +G A + + M+ + ++P + +
Sbjct: 398 EAYRVLREMNDNG--FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455
Query: 408 YYNGL 412
+G
Sbjct: 456 VLSGF 460
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y++++ QRR D+Y++M+ G+ P + +LI L+ ++M
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G LPDV Y+ LI+ K + +A R+ ++ E P+ TY L+ C+ +
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI-EFK 606
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLIT 189
V ++++ FC G++T
Sbjct: 607 SVVSLIKG----------FCMKGMMT 622
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 23/242 (9%)
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
++M G +V YN L+ V K K D+AI++F M + +PN TY LLN A
Sbjct: 294 NEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAE 353
Query: 160 GQ---LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
GQ LD V I + G Y+ L+ +K+ + ++ WS
Sbjct: 354 GQLVRLDGVVEISKRYMTQGI------YSYLVRT-LSKLGHVSEAHRLFCDM------WS 400
Query: 217 SVETSGNNAENEMM----GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272
++ M+ G K + + +H +G ++ Y+ F A +LK
Sbjct: 401 FPVKGERDSYMSMLESLCGAGK-TIEAIEMLSKIHEKGVVTDTMM--YNTVFSALGKLKQ 457
Query: 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYAT 332
+ + L E +KKD SPD++ I + G++D +FE+ S+ P Y +
Sbjct: 458 ISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNS 517
Query: 333 LV 334
L+
Sbjct: 518 LI 519
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKG-SRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
V D MM + V F +L G +K S + D F ++MK +G PD+ YN LI+
Sbjct: 439 VTDTMMYNTV------FSAL--GKLKQISHIHDLF---EKMKKDGPSPDIFTYNILIASF 487
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
G+ D+AI IFEE+++ + KP+ +Y L+N G +D + ++M G D
Sbjct: 488 GRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDV 547
Query: 182 FCYAGLI 188
Y+ L+
Sbjct: 548 VTYSTLM 554
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNTV ++L ++ + D+++ M DG P ++ LI + + + ++++
Sbjct: 445 YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE 504
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
+ PD+ YN LI+ GK + D+A F+EM++ + P+ TY L+ +++
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE 564
Query: 164 PVYAIVRDMTAAGA 177
Y++ +M G
Sbjct: 565 MAYSLFEEMLVKGC 578
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 139/364 (38%), Gaps = 55/364 (15%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP---TRDLFHSLIVGTMKGSRLQDTF 96
N YNT++ L + V+ M+ G +P T L +L+V + RL
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVV 363
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
+ G +Y+YL+ K + +A R+F +M + VK +Y+ +L +
Sbjct: 364 EISKRYMTQG------IYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESL 417
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
AG+ ++ + G D Y + +A K+ + + I +L E+ K
Sbjct: 418 CGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSA-LGKLKQ----ISHIHDLFEKMKK-- 470
Query: 217 SVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAM 276
+ P+ + + Y++ + + +V
Sbjct: 471 ----------------------DGPSPD------------IFTYNILIASFGRVGEVDEA 496
Query: 277 ETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
+ E L++ PD+ I C +GD+D H F++ P Y+TL+E
Sbjct: 497 INIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLME- 555
Query: 337 AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396
FG T + +++A M + P + + +L+ EK+G A ++ M+ +
Sbjct: 556 -CFGKTER-VEMAYSLFEEMLVKGC--QPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQ 611
Query: 397 KITP 400
+TP
Sbjct: 612 GLTP 615
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%)
Query: 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
++++++ +P ++SLI K + + +M+ G PDV Y+ L+
Sbjct: 498 NIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECF 557
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
GK + + A +FEEM +PN TY LL+ G+ + M G D
Sbjct: 558 GKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDS 617
Query: 182 FCYAGL 187
Y L
Sbjct: 618 ITYTVL 623
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
+++ G D+ YN L+ K ++A ++FE+MKK + + TY ++ G
Sbjct: 228 EIRRGGHKLDIFAYNMLLDALAK---DEKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIG 284
Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAHTNKIPRADDTATKIIE 207
+ D + +M G L+ Y L + A + +A ++++E
Sbjct: 285 KCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVE 333
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 78 LFHSLIVGTMKGSRLQDTF----FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
++ I+ + S L D F D M + +++ N LI G ++ +R+
Sbjct: 134 FLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRL 193
Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
+KK+++K N TY CLL A + + + ++ G LD F Y L+ A
Sbjct: 194 ---VKKWDLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAK 250
Query: 194 KIPRADDTATKIIE 207
D+ A ++ E
Sbjct: 251 -----DEKACQVFE 259
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN V+ L RF + V MM G +P SLI G +G+R+ D +M+
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKME 166
Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
GF PDV +YN +I G CK + A+ +F+ M++ V+ + TY L+ +G+
Sbjct: 167 EMGFRPDVVIYNTIID--GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGR 224
Query: 162 LDPVYAIVRDMT 173
++RDM
Sbjct: 225 WSDAARLMRDMV 236
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 107/275 (38%), Gaps = 9/275 (3%)
Query: 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
+++D M DGV+ ++SL+ G R D M +P+V + +I V
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 254
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
K +A++++EEM + V P+ TY L+N G++D ++ M G D
Sbjct: 255 VKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDV 314
Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
Y LI K R D+ TK+ + Q +G + N + +
Sbjct: 315 VTYNTLINGFC-KSKRVDE-GTKLFREMAQ-RGLVGDTITYNTIIQGYFQAGRPD----- 366
Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301
A+ + R + T + + C + +A+ L E ++K D+ I
Sbjct: 367 AAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKAL-VLFENMQKSEIELDITTYNIVIHG 425
Query: 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
G++++ +F C P Y T++ G
Sbjct: 426 MCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 460
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%)
Query: 35 RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
R+ N + V+ + +F +Y++M V P ++SLI G R+ +
Sbjct: 238 RDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDE 297
Query: 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
D M G LPDV YN LI+ K K D+ ++F EM + + + TY ++
Sbjct: 298 AKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 357
Query: 155 ACAAAGQLDPVYAIVRDMTA 174
AG+ D I M +
Sbjct: 358 GYFQAGRPDAAQEIFSRMDS 377
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 2/171 (1%)
Query: 21 RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
RF + + + + Y + ++++ R F D+ M G +P +++
Sbjct: 119 RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 178
Query: 81 SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKK 139
++I G+ K + D D+M+ +G D YN L++ +C + SD A R+ +M
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA-RLMRDMVM 237
Query: 140 YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
++ PN T+ +++ G+ + +MT D F Y LI
Sbjct: 238 RDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 34/198 (17%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
EE RR + YN+++ L R + + D M+ G P +++LI G K
Sbjct: 268 EEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKS 327
Query: 90 SRLQD-TFFFRDQMKANGFLPDVAVYN------------------------------YLI 118
R+ + T FR +M G + D YN Y I
Sbjct: 328 KRVDEGTKLFR-EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSI 386
Query: 119 SVCGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
+ G C N ++A+ +FE M+K E++ + TY +++ G ++ + + R ++ G
Sbjct: 387 LLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKG 446
Query: 177 AGLDKFCYAGLITAHTNK 194
D Y +I+ K
Sbjct: 447 LKPDVVSYTTMISGFCRK 464
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
+A YN++V L R+ + DM++ + P F ++I +K + +
Sbjct: 208 DAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLY 267
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
++M PDV YN LI+ G C + D+A ++ + M P+ TY L+N
Sbjct: 268 EEMTRRCVDPDVFTYNSLIN--GLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFC 325
Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
+ ++D + R+M G D Y +I +
Sbjct: 326 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E A+R + YNT++ R ++++ M +P + L+ G
Sbjct: 339 EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYGLCMNW 395
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
R++ + M+ + D+ YN +I K N + A +F + +KP+ +Y
Sbjct: 396 RVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYT 455
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176
+++ Q D + R M G
Sbjct: 456 TMISGFCRKRQWDKSDLLYRKMQEDG 481
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 159/416 (38%), Gaps = 49/416 (11%)
Query: 16 GALGRRFFVTSAGA--EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
G+L R +V A +E +R N N +V +L + + + GV
Sbjct: 208 GSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVY 267
Query: 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAI 131
P +++LI +++ F + M GF P V YN +I+ G CK+ ++A
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVIN--GLCKHGKYERAK 325
Query: 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
+F EM + + P+ TY LL G + + DM + D C++ +++
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLF 385
Query: 192 T------------NKIPRA----DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE 235
T N + A D+ I+ KG SV N NEM+
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM---NLRNEML----- 437
Query: 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIV 295
++G + + Y+ H + K + + L + + PD Y +
Sbjct: 438 ------------QQGCAMD--VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTL 483
Query: 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVN 355
I + G++ N ++F+ Y TL++G FG + A++ +
Sbjct: 484 TILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG--FGKVGD-IDTAKEIWAD 540
Query: 356 MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411
M S+ I +P S +LV A G A +WD M ++ I P++ + G
Sbjct: 541 MVSKEILPTPISYS--ILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 133/332 (40%), Gaps = 31/332 (9%)
Query: 35 RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
+ ++ YNTV+ L ++ ++V+ +M+ G+ P + SL++ K + +
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE 358
Query: 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
T M++ +PD+ ++ ++S+ + N D+A+ F +K+ + P+ Y L+
Sbjct: 359 TEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ 418
Query: 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIELVEQS 212
G + + +M G +D Y ++ + + AD ++ E
Sbjct: 419 GYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP 478
Query: 213 KGWS-SVETSGN----NAEN--EMMGVSKEELYNLPTAEYVHRRGGF------------- 252
++ ++ G+ N +N E+ KE+ L Y GF
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538
Query: 253 ---LSRLL----TVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304
+S+ + Y + +A C++ +A EM+ K+ K P V I I+ Y
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK-PTVMICNSMIKGYCR 597
Query: 305 SGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
SG+ +G E I P Y TL+ G
Sbjct: 598 SGNASDGESFLEKMISEGFVPDCISYNTLIYG 629
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y+ +V +L S+ V+D+M+ ++PT + +S+I G + D F ++M
Sbjct: 553 YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMI 612
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE--VKPNGQTYVCLLNACAAAGQ 161
+ GF+PD YN LI + +N +A + ++M++ + + P+ TY +L+ Q
Sbjct: 613 SEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQ 672
Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
+ ++R M G D+ Y +I ++
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 4/168 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNT++ ++++ DM+ + PT + L+ L + F D+M
Sbjct: 518 YNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMI 577
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
+ P V + N +I + N+ E+M P+ +Y L+ +
Sbjct: 578 SKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMS 637
Query: 164 PVYAIVRDMTAAGAGL--DKFCYAGLIT--AHTNKIPRADDTATKIIE 207
+ +V+ M GL D F Y ++ N++ A+ K+IE
Sbjct: 638 KAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIE 685
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN+++ Q + V M+ GV P R + +I G + L + F D+M
Sbjct: 660 YNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEML 719
Query: 104 ANGFLPD 110
GF PD
Sbjct: 720 QRGFSPD 726
>sp|Q9LSF5|PP254_ARATH Pentatricopeptide repeat-containing protein At3g25210,
mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2
SV=1
Length = 379
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 44 YNTVVTSLTSQRRFFLLR--DVYDDMML-DGVQPTRDLFHSLIVGTMKG-SRLQDTFFF- 98
YN ++ R+F R DVY+ M+ D +P + + L+ +K ++L + +
Sbjct: 146 YNCII-RFCCGRKFLFNRAFDVYNKMLRSDDSKPDLETYTLLLSSLLKRFNKLNVCYVYL 204
Query: 99 ------RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152
QMK+NG +PD V N +I KC D+AIR+F+EM Y +PN TY L
Sbjct: 205 HAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYL 264
Query: 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206
+ G++ ++M G + CY LI + + + R D A +++
Sbjct: 265 VKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLS--MERRLDEAVEVV 316
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
NA Y+ +V + + R Y +M + G+ P + LI RL +
Sbjct: 257 NAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVV 316
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
M AN PD+ YN +++ + +A+ + EE KK
Sbjct: 317 YDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKK 356
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN ++ +L F L VY+D DG+ F L+ G K R+++ +M+
Sbjct: 231 YNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMR 290
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
N PDV Y +I N D ++R+++EM++ E+KP+ Y L+ G+++
Sbjct: 291 ENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVE 350
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLI 188
Y + +M +D+ Y LI
Sbjct: 351 RGYELFMEMKGKQILIDREIYRVLI 375
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%)
Query: 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
++ Y ++ + YN L F + + M G P+ F LI R
Sbjct: 151 QKGYKHDFAAYNAFAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRRGL 210
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
++ ++MK GF P V +YN ++ K D A+ ++E+ K+ + T++ L+
Sbjct: 211 RVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILV 270
Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
AG+++ + I++ M D F Y +I
Sbjct: 271 KGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMI 305
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/332 (18%), Positives = 123/332 (37%), Gaps = 47/332 (14%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E R + Y T+V L R +++ +M + R+++ LI G +
Sbjct: 322 DEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVAD 381
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
+++ + + +G++ D+ +YN +I D+A ++F+ + E++P+ +T
Sbjct: 382 GKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAIEEELEPDFETL 441
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC--YAGLITAHTNKIPRADDTATKIIE 207
++ A +L ++ + G + + + L+ A K A D +
Sbjct: 442 SPIMVAYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKLLCADEEKNAMALD-----VF 496
Query: 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
+ ++KG SV +VY++ A
Sbjct: 497 YILKTKGHGSV---------------------------------------SVYNILMEAL 517
Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
++ D+Q +L ++K PD I C++ GD+ E I P
Sbjct: 518 YKMGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFHEKIIEMSCVPSI 577
Query: 328 ELYATLVEG-AMFGYTPKGMQLAQDTLVNMNS 358
Y +L +G G M L ++ L N+ S
Sbjct: 578 AAYLSLTKGLCQIGEIDAVMLLVRECLGNVES 609
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Query: 40 NASEYNTVVTSL-TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFF 98
N YN V+ + F + +D+M +GVQP R F+SL+ +G +
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
D+M DV YN L+ K D A I +M + PN +Y +++ A
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
AG+ D + +M G LD+ Y L++ +T K+ R+++ + E+
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYT-KVGRSEEALDILREM 470
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y+TV+ RF +++ +M G+ R +++L+ K R ++
Sbjct: 408 NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDIL 467
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M + G DV YN L+ GK D+ ++F EMK+ V PN TY L++ +
Sbjct: 468 REMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKG 527
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
G I R+ +AG D Y+ LI A
Sbjct: 528 GLYKEAMEIFREFKSAGLRADVVLYSALIDA 558
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Query: 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
+ ++++L + + + +++ G T F +LI + ++ + MK
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296
Query: 105 NGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G P++ YN +I CGK Q + F+EM++ V+P+ T+ LL C+ G +
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA 190
+ +MT D F Y L+ A
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDA 383
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%)
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
R+++D+M ++ +++L+ KG ++ F QM +P+V Y+ +I
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDG 418
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
K D+A+ +F EM+ + + +Y LL+ G+ + I+R+M + G D
Sbjct: 419 FAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKD 478
Query: 181 KFCYAGLI 188
Y L+
Sbjct: 479 VVTYNALL 486
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172
+ +F +M + E+KPN T+ +LNAC+ + ++ ++
Sbjct: 660 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEEL 701
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 33/337 (9%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E R + YN+++ +L + +V + M+ +GV P ++S++ G
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+ ++ F +M+++G PDV Y+ L+ K +A +IF+ M K +KP TY
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
LL A G L ++ ++ M G D + ++ LI A+ K + D ++ +
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA-KQGKVDQAMLVFSKMRQ 399
Query: 211 QSKGWSSVE--------TSGNNAENEMM--------GVS------KEELYNLPTAEYVHR 248
Q ++V E+ M+ G+S ++ L T R
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 249 RGGF----LSRLLTVYHVAFHA-----CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
L R + + + F++ C E + +++ E L E++ + P+V I
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES-EKLFELMVRIGVKPNVITYNTLI 518
Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
Y +G +D K+ + P Y+TL+ G
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
NA Y V+ L R ++ M+ +G+ P +++SLI G ++ +
Sbjct: 405 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 464
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M G + +N +I K ++ ++FE M + VKPN TY L+N A
Sbjct: 465 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLA 524
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
G++D ++ M + G + Y+ LI + KI R +D E+ +S G S
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC-KISRMEDALVLFKEM--ESSGVS 578
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/384 (22%), Positives = 149/384 (38%), Gaps = 32/384 (8%)
Query: 40 NASEYNTVVTSLT----SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
N YN ++ L SQ LL + DD G P + ++I G K
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRG-GGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 96 FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
+ +M G LPDV YN +I+ K + D+A+ + M K V P+ TY +L+
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275
Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGW 215
++GQ ++ M + G D Y+ L+ + K R + A KI + + +
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYS-LLMDYLCKNGRCME-ARKIFDSMTKRGLK 333
Query: 216 SSVETSGN--------NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267
+ T G A EM G L +L +H S L+ Y
Sbjct: 334 PEITTYGTLLQGYATKGALVEMHG-----LLDLMVRNGIHPDHYVFSILICAY------A 382
Query: 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327
+ K QAM +M ++ +P+ I SG +++ FE I P
Sbjct: 383 KQGKVDQAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441
Query: 328 ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387
+Y +L+ G T + A++ ++ M R I L+ + ++ + K G +
Sbjct: 442 IVYNSLIHGLC---TCNKWERAEELILEMLDRGICLNTIFFNS--IIDSHCKEGRVIESE 496
Query: 388 YIWDLMQARKITPSLPAVEAYYNG 411
+++LM + P++ NG
Sbjct: 497 KLFELMVRIGVKPNVITYNTLING 520
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN+++ L + ++ ++ +M+ G+ F+S+I K R+ ++ + M
Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G P+V YN LI+ D+A+++ M +KPN TY L+N +++
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITA--HTNKIPRADDTATKIIE 207
+ ++M ++G D Y ++ T + A + +I E
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E R N +N+++ S + R +++ M+ GV+P +++LI G
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
++ + M + G P+ Y+ LI+ G CK S + A+ +F+EM+ V P+ T
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLIN--GYCKISRMEDALVLFKEMESSGVSPDIIT 583
Query: 149 YVCLLNA 155
Y +L
Sbjct: 584 YNIILQG 590
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 51/253 (20%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N YNT++ + + M+ G++P + +LI G K SR++D
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 100 DQMKANGFLPDVAVYN---------------------------------YLISVCGKCKN 126
+M+++G PD+ YN Y I + G CKN
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629
Query: 127 --SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184
+D A+++F+ + ++K +T+ +++A G+ D +D+ A F
Sbjct: 630 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE----AKDLFVA------FSS 679
Query: 185 AGLITAH-TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243
GL+ + T ++ + ++E ++Q + S+E +G ++ M+ EL L
Sbjct: 680 NGLVPNYWTYRLMAENIIGQGLLEELDQL--FLSMEDNGCTVDSGMLNFIVREL--LQRG 735
Query: 244 EYVHRRGGFLSRL 256
E + R G +LS +
Sbjct: 736 E-ITRAGTYLSMI 747
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 143/366 (39%), Gaps = 50/366 (13%)
Query: 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104
N ++ + +L MM G +P F SLI G G+R+++ +QM
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164
G PDV +Y +I K + + A+ +F++M+ Y ++P+ Y L+N +G+
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230
Query: 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224
+++R MT D + LI A V++ K +
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDA-----------------FVKEGKFLDA------- 266
Query: 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284
EELYN E + R + T + C E V + +++
Sbjct: 267 ----------EELYN----EMI--RMSIAPNIFTYTSLINGFCME-GCVDEARQMFYLME 309
Query: 285 KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE--LYATLVEGAMFGYT 342
PDV I + +D+ K+F Y S+K Y TL++G FG
Sbjct: 310 TKGCFPDVVAYTSLINGFCKCKKVDDAMKIF--YEMSQKGLTGNTITYTTLIQG--FGQV 365
Query: 343 PKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402
K +AQ+ +M SR + P + + +L+ +G A I++ MQ R++
Sbjct: 366 GKP-NVAQEVFSHMVSRGV--PPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVA 422
Query: 403 PAVEAY 408
P + Y
Sbjct: 423 PNIWTY 428
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 116/308 (37%), Gaps = 13/308 (4%)
Query: 15 GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
G LG R + + + Y T++ SL ++D M G++P
Sbjct: 151 GFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRP 210
Query: 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
++ SL+ G R +D M PDV +N LI K A ++
Sbjct: 211 DVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELY 270
Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
EM + + PN TY L+N G +D + M G D Y LI K
Sbjct: 271 NEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFC-K 329
Query: 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS 254
+ DD E+ ++ +++ + + G + N+ + H +
Sbjct: 330 CKKVDDAMKIFYEMSQKGLTGNTITYT-----TLIQGFGQVGKPNVAQEVFSHMVSRGVP 384
Query: 255 RLLTVYHVAFHA-CAELKDVQAMETLLEMLKK--DRKSPDV--YIVMQNIRCYLHSGDID 309
+ Y+V H C K +A+ +M K+ D +P++ Y V+ + CY +G ++
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCY--NGKLE 442
Query: 310 NGHKVFED 317
VFED
Sbjct: 443 KALMVFED 450
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E +++ N Y T++ + + ++V+ M+ GV P ++ L+
Sbjct: 342 EMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNG 401
Query: 91 RLQDTFFFRDQMKA---NGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPN 145
+++ + M+ +G P++ YN L+ G C N ++A+ +FE+M+K E+
Sbjct: 402 KVKKALMIFEDMQKREMDGVAPNIWTYNVLLH--GLCYNGKLEKALMVFEDMRKREMDIG 459
Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
TY ++ AG++ + + + G + Y +I+
Sbjct: 460 IITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISG 504
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 4/188 (2%)
Query: 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
+ + N Y ++ R +++DM+ G++P + ++ G ++ +
Sbjct: 291 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKS 350
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
D MK+ G P+V Y +I K + + AI F++M ++P+ Y CL+
Sbjct: 351 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 410
Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-KIPRADDTATKIIELVEQS 212
+LD VY ++++M G D Y LI N K+P + AT+I + Q+
Sbjct: 411 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMP---EHATRIYNKMIQN 467
Query: 213 KGWSSVET 220
+ S+ T
Sbjct: 468 EIEPSIHT 475
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y ++ Q + +DDM+ G+QP ++ LI G +L +
Sbjct: 367 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 426
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M+ G PD YN LI + K + A RI+ +M + E++P+ T+ ++ + A
Sbjct: 427 KEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMA 486
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
+ A+ +M G D Y LI
Sbjct: 487 RNYEMGRAVWEEMIKKGICPDDNSYTVLI 515
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 7/160 (4%)
Query: 21 RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
RFF +A R+ +A+++ YN++++ L R+F + V ++M G+
Sbjct: 180 RFFCWAA-----ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTI 234
Query: 81 SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
++ R + F + MK F V N L+ G+ K +A +F+++K+
Sbjct: 235 AMKAFAAAKERKKAVGIF-ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE- 292
Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
PN TY LLN L I DM G D
Sbjct: 293 RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPD 332
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 134/379 (35%), Gaps = 95/379 (25%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTM---KGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
V D+M LD L H LIV + + +R FF + GF D YN ++S
Sbjct: 151 VLDEMKLD-------LSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMS 203
Query: 120 VCGK----------------------------------CKNSDQAIRIFEEMKKYEVKPN 145
+ K K +A+ IFE MKKY+ K
Sbjct: 204 ILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 263
Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
+T CLL++ A +L ++ D + Y L+ ++
Sbjct: 264 VETINCLLDSLGRA-KLGKEAQVLFDKLKERFTPNMMTYTVLLNGW-----------CRV 311
Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
L+E ++ W+ + G + V E L R S + ++HV
Sbjct: 312 RNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLL----------RSRKKSDAIKLFHV--- 358
Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
+K P+V Y +M IR + ++ + F+D + S
Sbjct: 359 -----------------MKSKGPCPNVRSYTIM--IRDFCKQSSMETAIEYFDDMVDSGL 399
Query: 324 FPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGY 383
P A +Y L+ G FG T K + + L M + + + L+ + A +K +
Sbjct: 400 QPDAAVYTCLITG--FG-TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEH 456
Query: 384 TTANYIWDLMQARKITPSL 402
T I++ M +I PS+
Sbjct: 457 ATR--IYNKMIQNEIEPSI 473
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 2/168 (1%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN ++ S+ +R + + +Y D++ +G P + +L+ + D +MK
Sbjct: 318 YNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMK 377
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTYVCLLNACAAAGQL 162
G V +YN L+S+C + D+A IF++MK E P+ T+ L+ A +G++
Sbjct: 378 EKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRV 437
Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
A + M AG F +I + K + DD +++E
Sbjct: 438 SEAEAALLQMREAGFEPTLFVLTSVIQCY-GKAKQVDDVVRTFDQVLE 484
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISV 120
++Y++M GV+P +++ LI + R Q ++D + NGF P+ + Y L+
Sbjct: 301 NIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKD-LITNGFTPNWSTYAALVRA 359
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM-TAAGAGL 179
G+ + D A+ I+ EMK+ + Y LL+ CA +D + I +DM
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDP 419
Query: 180 DKFCYAGLITAH 191
D + ++ LIT +
Sbjct: 420 DSWTFSSLITVY 431
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 15/261 (5%)
Query: 64 YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
++ M G +P ++I + + D+ + + D ++ LI + G
Sbjct: 233 FEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGV 292
Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
N D + I+EEMK VKPN Y L+++ A + I +D+ G +
Sbjct: 293 SGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWST 352
Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-----AENEMMGVSKEELY 238
YA L+ A+ R D A I +++ KG S N A+N + + E
Sbjct: 353 YAALVRAYGRA--RYGDDALAIYREMKE-KGLSLTVILYNTLLSMCADNRYVDEAFEIFQ 409
Query: 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298
++ E S L+TVY AC+ V E L +++ P ++++
Sbjct: 410 DMKNCETCDPDSWTFSSLITVY-----ACS--GRVSEAEAALLQMREAGFEPTLFVLTSV 462
Query: 299 IRCYLHSGDIDNGHKVFEDYI 319
I+CY + +D+ + F+ +
Sbjct: 463 IQCYGKAKQVDDVVRTFDQVL 483
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMM-LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
YNT+++ R +++ DM + P F SLI R+ + QM
Sbjct: 388 YNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQM 447
Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
+ GF P + V +I GK K D +R F+++ + + P+ + CLLN
Sbjct: 448 REAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLN 499
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 68 MLDGVQPTRD-LFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
+L+ ++P+R+ + +++ + + S+ L+ + D+M G PD A + +IS +
Sbjct: 165 LLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNG 224
Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
+A+ FE+M + +P+ T +++A AG +D ++ +D ++
Sbjct: 225 VPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFS 284
Query: 186 GLI 188
LI
Sbjct: 285 TLI 287
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169
+V +YN + V K K+ +++ ++F+EM + +KP+ T+ +++ G
Sbjct: 174 EVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWF 233
Query: 170 RDMTAAGAGLDKFCYAGLITAH 191
M++ G D A +I A+
Sbjct: 234 EKMSSFGCEPDNVTMAAMIDAY 255
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNT++ +++ + R L+++ DM +G+ P R +++L+ G K L++ F + MK
Sbjct: 243 YNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
LPD+ YN LI+ + + + + + MK +++P+ TY L++ C G
Sbjct: 303 QTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELG 359
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 11/212 (5%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E + S +N+++ L + L + +D++ G+ P F+S+I+G K
Sbjct: 510 DEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKE 569
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN--SDQAIRIFEEMKKYEVKPNGQ 147
R++ F F ++ + F PD N L++ G CK +++A+ F + + E + +
Sbjct: 570 GRVEKAFEFYNESIKHSFKPDNYTCNILLN--GLCKEGMTEKALNFFNTLIE-EREVDTV 626
Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKI 205
TY +++A +L Y ++ +M G D+F Y I+ K+ D+ K
Sbjct: 627 TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKF 686
Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237
K VET N A +E SKEEL
Sbjct: 687 SGKFGSMKRDLQVETEKNPATSE----SKEEL 714
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 24/227 (10%)
Query: 72 VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQ 129
V P +++++ K RL D MK NG +P+ YN L V G CK + +
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNL--VYGYCKLGSLKE 293
Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
A +I E MK+ V P+ TY L+N AG + ++ M + D Y LI
Sbjct: 294 AFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLI- 352
Query: 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249
D ++ +E K +E G A +S + L E V R+
Sbjct: 353 ----------DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRK 402
Query: 250 -------GGFLSRLLTVYHVAFHACAELKDVQ-AMETLLEMLKKDRK 288
GF ++T YH A ++ D+ A+E + EM +K K
Sbjct: 403 VKELVDMHGFSPDIVT-YHTLIKAYLKVGDLSGALEMMREMGQKGIK 448
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM----KANGFLPDVAVYNY 116
R+V+DDM+ GV F+ L+ G +L+D ++M K N PD YN
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVN---PDNVTYNT 245
Query: 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
++ K + +MKK + PN TY L+ G L + IV M
Sbjct: 246 ILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTN 305
Query: 177 AGLDKFCYAGLITAHTN 193
D Y LI N
Sbjct: 306 VLPDLCTYNILINGLCN 322
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 78/158 (49%), Gaps = 14/158 (8%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMK------GSRLQDTFFFRDQMKANGFLPDVAVYNY 116
++ M+ ++P ++L++G ++ S ++ F D M G +V +N
Sbjct: 153 IFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVF---DDMVKIGVSLNVQTFNV 209
Query: 117 LIS-VCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
L++ C + K D A+ + E M +++V P+ TY +L A + G+L + ++ DM
Sbjct: 210 LVNGYCLEGKLED-ALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKK 268
Query: 175 AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212
G ++ Y L+ + K+ + A +I+EL++Q+
Sbjct: 269 NGLVPNRVTYNNLVYGYC-KLGSLKE-AFQIVELMKQT 304
>sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405
OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
Length = 458
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 17 ALGRRFFVTSAGAEEYARRNY--ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
LG FV A A Y + Y + YNT++ +L F R + D M L G +
Sbjct: 174 CLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRY 233
Query: 75 TRDLFHSLIV-------GTMKGSR-------LQDTFFFRDQMKANGFLPDVAVYNYLISV 120
D + I+ G G R + FR+ M GF+PDV YN LI
Sbjct: 234 PPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFRE-MLFRGFVPDVVTYNCLIDG 292
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
C K +A+ +FE+MK PN TY + + +++ ++R M G G+
Sbjct: 293 CCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVP 352
Query: 181 -KFCYAGLITAHTNKIPRADDTATKIIELVE 210
Y LI A + RA + ++E+VE
Sbjct: 353 GSSTYTPLIHALV-ETRRAAEARDLVVEMVE 382
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 3/161 (1%)
Query: 3 LLQSIYRHHKSVG--GALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
L+ S R+ G A+ RR + + E R + + YN ++ R
Sbjct: 243 LISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRA 302
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF-LPDVAVYNYLIS 119
++++DM G P + ++S I + ++ MK G +P + Y LI
Sbjct: 303 LELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIH 362
Query: 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
+ + + +A + EM + + P TY + +A ++ G
Sbjct: 363 ALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEG 403
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 124/294 (42%), Gaps = 6/294 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y T+VT+LT Q+ F L + + +G++P LF+++I + + L ++MK
Sbjct: 357 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 416
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNACAAAGQL 162
+G P + +N LI GK +++ R+ + M + E ++PN +T L+ A ++
Sbjct: 417 ESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKI 476
Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
+ + IV M + G D + L A+ +I II + +K +V T G
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYA-RIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535
Query: 223 NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282
EE Y + G L V++ + D+ + ++++
Sbjct: 536 TIVNGYCEEGKMEEALRF---FYRMKELGVHPNLF-VFNSLIKGFLNINDMDGVGEVVDL 591
Query: 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
+++ PDV + + GD+ +++ D + P ++ L +G
Sbjct: 592 MEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
+++ ++ +G +P+ + +L+ + +++ NG PD ++N +I+
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
+ N DQA++IFE+MK+ KP T+ L+ G+L+
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLE 441
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
++T++ + +S ++Y DM+ G+ P F L G + + +QM+
Sbjct: 604 FSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMR 663
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM-KKYEVKPNGQTYVCLLNACAAAGQL 162
G P+V +Y +IS +A++++++M + PN TY L+ A Q
Sbjct: 664 KFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQP 723
Query: 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222
+++DM N +P K ++L+ + GW S+ S
Sbjct: 724 WKAEELLKDMEGK-----------------NVVP-----TRKTMQLI--ADGWKSIGVSN 759
Query: 223 NNAENEM-MGVSKEELYNLPTAEYVHRRGGFL 253
+N N + S N+P R FL
Sbjct: 760 SNDANTLGSSFSTSSKLNIPNNIASSRSPLFL 791
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 71 GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
GV P +F+SLI G + + + D M+ G PDV ++ L++ + +
Sbjct: 561 GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRC 620
Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
I+ +M + + P+ + L A AG+ + I+ M G + Y +I+
Sbjct: 621 EEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISG 680
Query: 191 HTN--KIPRADDTATKIIELVEQSKGWSSVET 220
+ ++ +A K+ +V S ++ ET
Sbjct: 681 WCSAGEMKKAMQVYKKMCGIVGLSPNLTTYET 712
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316
L Y A K ++ +L+ ++K+ PD + I SG++D K+FE
Sbjct: 354 LITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFE 413
Query: 317 DYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAA 376
S P A + TL++ GY G L++M R+ L P + +LV A
Sbjct: 414 KMKESGCKPTASTFNTLIK----GYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQA 469
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 82 LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE 141
L+ G ++ R Q+ + + G P + Y L++ + K+ + + +++K
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384
Query: 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201
+KP+ + ++NA + +G LD I M +G + LI + KI + +++
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGY-GKIGKLEES 443
Query: 202 A 202
+
Sbjct: 444 S 444
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNT++ + + VY M +GV+P + +++LI G K R+++ + M
Sbjct: 268 YNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMV 327
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQ--AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
G+ PD A Y L++ G C+ + A+ + EEM+ PN TY LL+ A
Sbjct: 328 DAGYEPDTATYTSLMN--GMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARL 385
Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLI 188
+D + M ++G L+ YA L+
Sbjct: 386 MDKGMELYEMMKSSGVKLESNGYATLV 412
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 1/166 (0%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMK 88
+E ++ + YN ++ L + ++ + D+M D V+P F LI
Sbjct: 183 KELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCN 242
Query: 89 GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
L++ + ++ GF PD +YN ++ +A+ ++++MK+ V+P+ T
Sbjct: 243 SKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQIT 302
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
Y L+ + AG+++ ++ M AG D Y L+ K
Sbjct: 303 YNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRK 348
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 71 GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
G +P L+++++ G S+ + +MK G PD YN LI K ++A
Sbjct: 260 GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEA 319
Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
+ M +P+ TY L+N G+ +++ +M A G + Y L+
Sbjct: 320 RMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLL-- 377
Query: 191 HTNKIPRADDTATKIIELVEQS 212
H R D ++ E+++ S
Sbjct: 378 HGLCKARLMDKGMELYEMMKSS 399
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 1/162 (0%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMK 88
+E + N +N V++ L D+Y D+M D PT + LI G K
Sbjct: 844 KEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSK 903
Query: 89 GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
RL + + M G P+ A+YN LI+ GK +D A +F+ M K V+P+ +T
Sbjct: 904 SGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKT 963
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
Y L++ G++D +++ +G D CY +I
Sbjct: 964 YSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 11/187 (5%)
Query: 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
+ NA YN ++ L R +VY M+L+G +P+ + SL+VG K +
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVM 243
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
+M+ G P+V + I V G+ ++A I + M P+ TY L++A
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 216
A +LD + M D+ Y L+ ++ R D+ + WS
Sbjct: 304 CTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDN--RDLDSVKQF---------WS 352
Query: 217 SVETSGN 223
+E G+
Sbjct: 353 EMEKDGH 359
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 71 GVQPTRDLFHSLIVGTMKGSRL---QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127
GVQP ++ LI G ++ + QD F Q+K+ G +PDVA YN+L+ GK
Sbjct: 780 GVQPKLPTYNLLIGGLLEADMIEIAQDVFL---QVKSTGCIPDVATYNFLLDAYGKSGKI 836
Query: 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
D+ +++EM +E + N T+ +++ AG +D + D+ +
Sbjct: 837 DELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 35 RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
R+++ A Y ++ L+ R + + +++ M+ G +P +++ LI G K
Sbjct: 885 RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADA 944
Query: 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
+M G PD+ Y+ L+ D+ + F+E+K+ + P+ Y ++N
Sbjct: 945 ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIIN 1004
Query: 155 ACAAAGQLDPVYAIVRDM-TAAGAGLDKFCYAGLI 188
+ +L+ + +M T+ G D + Y LI
Sbjct: 1005 GLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 64 YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-GFLPDVAVYNYLISVCG 122
+ ++ G+ P ++ +I G K RL++ ++MK + G PD+ YN LI G
Sbjct: 984 FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLG 1043
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176
++A +I+ E+++ ++PN T+ L+ + +G+ + YA+ + M G
Sbjct: 1044 IAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1097
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 1/181 (0%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E + + + + +V +L F D D M G+ P +++LI G ++
Sbjct: 353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVH 412
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
RL D M++ G P Y I GK +S A+ FE+MK + PN
Sbjct: 413 RLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACN 472
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
L + A AG+ I + G D Y ++ ++ K+ D+ + E++E
Sbjct: 473 ASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS-KVGEIDEAIKLLSEMME 531
Query: 211 Q 211
Sbjct: 532 N 532
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y T++ + R ++ + +M DG P F L+ K + F D M+
Sbjct: 331 YITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR 390
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G LP++ YN LI + D A+ +F M+ VKP TY+ ++ +G D
Sbjct: 391 DQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG--D 448
Query: 164 PVYAI 168
V A+
Sbjct: 449 SVSAL 453
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 114/301 (37%), Gaps = 22/301 (7%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y ++ +L + R+ ++V++ M +P R + +L+ L F +M+
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEME 355
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
+G +PDV + L+ K N +A + M+ + PN TY L+ +LD
Sbjct: 356 KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLD 415
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAH------TNKIPRADDTATKII--ELVEQSKGW 215
+ +M + G + Y I + + + + TK I +V +
Sbjct: 416 DALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 475
Query: 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
S+ +G + E +K+ Y L V Y++ +++ ++
Sbjct: 476 YSLAKAGRDRE------AKQIFYGLKDIGLVPDS--------VTYNMMMKCYSKVGEIDE 521
Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335
LL + ++ PDV +V I + +D K+F + P Y TL+
Sbjct: 522 AIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLA 581
Query: 336 G 336
G
Sbjct: 582 G 582
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%)
Query: 66 DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
+MM +G +P + +SLI K R+ + + +MK P V YN L++ GK
Sbjct: 528 EMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNG 587
Query: 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
+AI +FE M + PN T+ L + ++ ++ M G D F Y
Sbjct: 588 KIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYN 647
Query: 186 GLI 188
+I
Sbjct: 648 TII 650
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 1/150 (0%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FF 98
+ + YN ++ + + L ++Y +M + + +I G +K + D +
Sbjct: 819 DVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLY 878
Query: 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158
D M F P Y LI K +A ++FE M Y +PN Y L+N
Sbjct: 879 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938
Query: 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
AG+ D A+ + M G D Y+ L+
Sbjct: 939 AGEADAACALFKRMVKEGVRPDLKTYSVLV 968
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 14/155 (9%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRR-------FFLLRDVYDDMMLDGVQPTRDLFHSL 82
E+ + A N N + SL R F+ L+D+ G+ P ++ +
Sbjct: 457 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI-------GLVPDSVTYNMM 509
Query: 83 IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142
+ K + + +M NG PDV V N LI+ K D+A ++F MK+ ++
Sbjct: 510 MKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKL 569
Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
KP TY LL G++ + M G
Sbjct: 570 KPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGC 604
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 69/352 (19%), Positives = 139/352 (39%), Gaps = 37/352 (10%)
Query: 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137
+F SL ++KG Q + R +M+ GF+ + YN LI + K + +A+ ++ M
Sbjct: 159 IFKSL---SVKGGLKQAPYALR-KMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM 214
Query: 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY---------AGLI 188
+P+ QTY L+ +D V ++++M G + + + AG I
Sbjct: 215 ILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKI 274
Query: 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248
+ R DD ++V + ++ T+ + +KE + T +
Sbjct: 275 NEAYEILKRMDDEGCG-PDVVTYTVLIDALCTA------RKLDCAKEVFEKMKTGRHKPD 327
Query: 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308
R +++ L ++ +D+ +++ ++KD PDV + +G+
Sbjct: 328 RVTYITLL--------DRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNF 379
Query: 309 DNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG 368
+ P Y TL+ G + + + A + NM S + P
Sbjct: 380 GEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHR---LDDALELFGNMESLGV--KPTAY 434
Query: 369 SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL----KDRE 416
+ ++ + KSG +A ++ M+ + I P++ A A L +DRE
Sbjct: 435 TYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDRE 486
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNT++ L + ++++ M+ G P F++L K + +M
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G +PDV YN +I K +A+ F +MKK V P+ T LL A ++
Sbjct: 636 DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIE 694
Query: 164 PVYAIVRD 171
Y I+ +
Sbjct: 695 DAYKIITN 702
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
F K G P + YN LI + + A +F ++K P+ TY LL+A
Sbjct: 771 LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830
Query: 157 AAAGQLDPVYAIVRDMTA 174
+G++D ++ + ++M+
Sbjct: 831 GKSGKIDELFELYKEMST 848
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/402 (19%), Positives = 144/402 (35%), Gaps = 68/402 (16%)
Query: 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
+ Y + YN+V++ L +V D M+ P +++LI K ++++
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
+ + + G LPDV +N LI +N A+ +FEEM+ +P+ TY L+
Sbjct: 383 EATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLI 442
Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRADDTATKIIELVEQ 211
++ + G+LD +++ M +G Y LI NK A++
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFD-------- 494
Query: 212 SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
E E+ GVS+ + Y+ + +
Sbjct: 495 --------------EMEVHGVSRNSV---------------------TYNTLIDGLCKSR 519
Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
V+ L++ + + + PD Y + + GDI + + + P Y
Sbjct: 520 RVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYG 579
Query: 332 TLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD 391
TL+ G +++A L ++ + I L+P + I
Sbjct: 580 TLISGLC---KAGRVEVASKLLRSIQMKGINLTP-----------------HAYNPVIQG 619
Query: 392 LMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRAYDN 433
L + RK T A+ + L+ E P D +V R N
Sbjct: 620 LFRKRKTT---EAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 70 DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129
DG P + F++L+ G K ++ D M G+ PDV YN +IS K +
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348
Query: 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
A+ + ++M + PN TY L++ Q++ + R +T+ G D + LI
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%)
Query: 15 GGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74
G L R V EE + + YN ++ SL S+ + ++ M L G
Sbjct: 409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR 468
Query: 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134
+ +++LI G K ++ ++ D+M+ +G + YN LI K + + A ++
Sbjct: 469 SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528
Query: 135 EEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
++M KP+ TY LL G + IV+ MT+ G D Y LI+
Sbjct: 529 DQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQ----------------------------------- 54
++ R+ + N YNT++++L +
Sbjct: 354 DQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 413
Query: 55 RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114
R + +++++M G +P ++ LI +L + QM+ +G V Y
Sbjct: 414 RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITY 473
Query: 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174
N LI K + +A IF+EM+ + V N TY L++ + +++ ++ M
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533
Query: 175 AGAGLDKFCYAGLIT 189
G DK+ Y L+T
Sbjct: 534 EGQKPDKYTYNSLLT 548
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E + N+ YNT++ L RR + D M+++G +P + ++SL+ +G
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRG 553
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125
++ M +NG PD+ Y LIS G CK
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLIS--GLCK 587
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 66 DMMLD--GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123
D M+D G++P ++ ++ + G+ L+ +M G PDV+ +N LI +
Sbjct: 142 DWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCR 201
Query: 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183
AI + E+M Y + P+ +T+ ++ G LD I M G
Sbjct: 202 AHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVS 261
Query: 184 YAGLITAHTNKIPRADDTATKIIELVEQ 211
+I K R +D I E+ Q
Sbjct: 262 -VNVIVHGFCKEGRVEDALNFIQEMSNQ 288
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 82 LIVGTMKGSRLQDTFFFRDQMK-ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
++ G K R++D F +M +GF PD +N L++ K + AI I + M +
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324
Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT--AHTNKIPRA 198
P+ TY +++ G++ ++ M + Y LI+ N++ A
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384
Query: 199 DDTA 202
+ A
Sbjct: 385 TELA 388
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/130 (17%), Positives = 58/130 (44%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN ++ L L+ + M + G++P F+ LI + +L+ + M
Sbjct: 157 YNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMP 216
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
+ G +PD + ++ + + D A+RI E+M ++ + + +++ G+++
Sbjct: 217 SYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVE 276
Query: 164 PVYAIVRDMT 173
+++M+
Sbjct: 277 DALNFIQEMS 286
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Query: 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
+ ++ Y T+V +L ++F + + D+M+ DG +P ++ LI + + L++
Sbjct: 355 FKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAM 414
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
+QM+ G PD Y LI + K D A+ +++ M++ + P+ TY ++N
Sbjct: 415 NVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCL 474
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
AG L + + +M G + + +I H R +TA K+
Sbjct: 475 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKA--RNYETALKL 521
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 2/172 (1%)
Query: 16 GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
G LGR +F + +E R N YN ++ S +V++ M G +
Sbjct: 367 GNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCE 426
Query: 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
P R + +LI K L +M+ G PD Y+ +I+ GK + A R+
Sbjct: 427 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRL 486
Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185
F EM PN T+ ++ A A + + RDM AG DK Y+
Sbjct: 487 FCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYS 538
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y+ ++ L ++ +M+ G P F+ +I K + M+
Sbjct: 467 YSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 526
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
GF PD Y+ ++ V G C ++A +F EM++ P+ Y L++ AG +D
Sbjct: 527 NAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVD 586
Query: 164 PVYAIVRDMTAAG 176
+ + M AG
Sbjct: 587 KAWQWYQAMLQAG 599
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 67/154 (43%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N +N ++ R + +Y DM G QP + + ++ L++
Sbjct: 498 NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVF 557
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M+ ++PD VY L+ + GK N D+A + ++ M + ++PN T LL+
Sbjct: 558 AEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRV 617
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
++ Y +++ M A G Y L++ T+
Sbjct: 618 HRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTD 651
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%)
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
FF + GF D Y ++ G+ K + ++ +EM + KPN TY L+++
Sbjct: 345 FFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSY 404
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
A L + M AG D+ Y LI H
Sbjct: 405 GRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIH 439
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y TV+ +F + R++YD+M+ + P+ + LI G K RL+ F + +MK
Sbjct: 553 YTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMK 612
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G P+V +N L+ K N D+A R +M++ + PN +Y L++ + +
Sbjct: 613 KRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWE 672
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211
V + ++M D + + L H K D ++ +E +E+
Sbjct: 673 EVVKLYKEMLDKEIEPDGYTHRALF-KHLEK-----DHESREVEFLER 714
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 47 VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106
+V ++ QR+ F + G+ P + ++I G ++ + + D+M
Sbjct: 531 LVKAIEFQRKIFRV----------GLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKR 580
Query: 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166
P V Y LI K +QA + EMKK V+PN T+ LL AG +D Y
Sbjct: 581 LYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAY 640
Query: 167 AIVRDMTAAGAGLDKFCYAGLITAHTN 193
+ M G +K+ Y LI+ + +
Sbjct: 641 RYLCKMEEEGIPPNKYSYTMLISKNCD 667
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%)
Query: 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFF 97
A + YNT++ +F ++DD+ + P+ +++LI G + L+
Sbjct: 371 APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR 430
Query: 98 FRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
+++M PDV Y L+ K N A +++EM + +KP+G Y
Sbjct: 431 LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGEL 490
Query: 158 AAGQLDPVYAIVRDMTAA 175
G D + + +M A
Sbjct: 491 RLGDSDKAFRLHEEMVAT 508
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 4/145 (2%)
Query: 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRD 100
S YN + +L R R++ M P +++L+ G +K + + D
Sbjct: 343 TSTYNIYICALCDFGRIDDARELLSSM----AAPDVVSYNTLMHGYIKMGKFVEASLLFD 398
Query: 101 QMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
++A P + YN LI + N + A R+ EEM + P+ TY L+ G
Sbjct: 399 DLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNG 458
Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYA 185
L + +M G D + Y
Sbjct: 459 NLSMATEVYDEMLRKGIKPDGYAYT 483
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 13/326 (3%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
E+ R+ + + N V+ L R VY+ M+ G+ PT F++++ K
Sbjct: 192 EKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKA 251
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
L+ +MK YN LI+ K ++A R +M++ ++
Sbjct: 252 GDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSF 311
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209
L+ G D + + +M AG Y I A + R DD EL+
Sbjct: 312 NPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCD-FGRIDDAR----ELL 366
Query: 210 EQSKGWSSVETSGNNAENEMM-GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268
SS+ + N +M G K + + + R G + + Y+
Sbjct: 367 ------SSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLC 420
Query: 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328
E +++ + L E + PDV ++ ++ +G++ +V+++ + P
Sbjct: 421 ESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGY 480
Query: 329 LYATLVEGAM-FGYTPKGMQLAQDTL 353
Y T G + G + K +L ++ +
Sbjct: 481 AYTTRAVGELRLGDSDKAFRLHEEMV 506
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 2/174 (1%)
Query: 36 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDT 95
NY YN ++ SL +++ L+ VY+ M+ DG P ++ ++ + +
Sbjct: 217 NYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRL 276
Query: 96 FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155
+ D+M +GF PD+ YN L+ A+ + M++ V+P + L++
Sbjct: 277 YRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDG 336
Query: 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
+ AG+L+ + + G D CY +IT + + ++ +A++ ++ E
Sbjct: 337 LSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTE 390
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E + ++ + YN ++ L + + ++ + M GV+P F +LI G +
Sbjct: 281 DEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRA 340
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149
+L+ +F D+ G PDV Y +I+ ++A +F+EM + PN TY
Sbjct: 341 GKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTY 400
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADDTATKIIE 207
++ AG+ A++++M + G + Y+ L+ N K+ A + ++E
Sbjct: 401 NSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVE 460
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
+ T++ L+ + + D+ + G P + +I G + G L+ +M
Sbjct: 330 FTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMT 389
Query: 104 ANGFLPDVAVYNYLI---SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
G LP+V YN +I + GK K +A + +EM+ PN Y L+N AG
Sbjct: 390 EKGQLPNVFTYNSMIRGFCMAGKFK---EACALLKEMESRGCNPNFVVYSTLVNNLKNAG 446
Query: 161 QLDPVYAIVRDMTAAG 176
++ + +V+DM G
Sbjct: 447 KVLEAHEVVKDMVEKG 462
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 40/210 (19%)
Query: 3 LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
+L+++ +K+ L +FFV G E N+ + A+ Y+ ++ + +
Sbjct: 119 ILRTLSFDNKTRCAKLAYKFFVWCGGQE-----NFRHTANCYHLLMKIFAECGEYKAMCR 173
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD---------TFFFR-------------- 99
+ D+M+ DG T F+ LI + +D TF +R
Sbjct: 174 LIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLL 233
Query: 100 ------------DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147
+QM +GF PDV YN ++ + +D+ R+ +EM K P+
Sbjct: 234 GVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLY 293
Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177
TY LL+ A + ++ M G
Sbjct: 294 TYNILLHHLATGNKPLAALNLLNHMREVGV 323
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
D+M +G+ +N LI CG+ + + F + K + +P +Y +L++
Sbjct: 176 DEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGV 235
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH-----TNKIPRADDTATK 204
Q + + M G D Y ++ A+ T+++ R D K
Sbjct: 236 KQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVK 285
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%)
Query: 35 RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
+ Y + +N ++ ++Q + ++ D M+ +GV P ++SL+ G K S+ +D
Sbjct: 455 KGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFED 514
Query: 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154
M G P++ +N L+ + + D+A+ + EEMK V P+ T+ L++
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLID 574
Query: 155 ACAAAGQLDPVYAIVRDMTAA 175
G LD Y + R M A
Sbjct: 575 GFCKNGDLDGAYTLFRKMEEA 595
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 106/275 (38%), Gaps = 7/275 (2%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N YNT++ L++Q + ++M G+ P F+ L+ G K + D
Sbjct: 390 NVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLV 449
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
M + G+ PD+ +N LI + A+ I + M V P+ TY LLN
Sbjct: 450 KVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 509
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVE 219
+ + V + M G + F + L+ + R D A ++E ++
Sbjct: 510 SKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRY--RKLDEALGLLEEMKNKSVNPDAV 567
Query: 220 TSGNNAENEMMGVSKEELYNL-PTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278
T G + + Y L E ++ +S Y++ HA E +V E
Sbjct: 568 TFGTLIDGFCKNGDLDGAYTLFRKMEEAYK----VSSSTPTYNIIIHAFTEKLNVTMAEK 623
Query: 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313
L + + PD Y + + +G+++ G+K
Sbjct: 624 LFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYK 658
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 6/272 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNT++ L + D + +G P + + SLI G ++
Sbjct: 324 YNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEAL 383
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
G P+V +YN LI +A ++ EM + + P QT+ L+N G +
Sbjct: 384 GKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVS 443
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223
+V+ M + G D F + LI ++ ++ + A +I++++ + V T N
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGYSTQLKM--ENALEILDVMLDNGVDPDVYTY-N 500
Query: 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283
+ N + SK E V + G L T +++ + + + LLE +
Sbjct: 501 SLLNGLCKTSKFEDVMETYKTMVEK--GCAPNLFT-FNILLESLCRYRKLDEALGLLEEM 557
Query: 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315
K +PD I + +GD+D + +F
Sbjct: 558 KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
Query: 33 ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL 92
+ A N +N ++ SL R+ + ++M V P F +LI G K L
Sbjct: 523 VEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL 582
Query: 93 QDTF-FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
+ FR +A YN +I + N A ++F+EM + P+G TY
Sbjct: 583 DGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRL 642
Query: 152 LLNACAAAGQLDPVYAIVRDMTAAG 176
+++ G ++ Y + +M G
Sbjct: 643 MVDGFCKTGNVNLGYKFLLEMMENG 667
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 6/161 (3%)
Query: 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ 101
S +N ++ L + + D ++ GV P ++ I G + L
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276
Query: 102 MKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+ G PDV YN LI G CKNS +A +M ++P+ TY L+
Sbjct: 277 LIEQGPKPDVITYNNLIY--GLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKG 334
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI--TAHTNKIPRA 198
G + IV D G D+F Y LI H + RA
Sbjct: 335 GMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRA 375
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y TVV + +++ M+ GV F+ L+ K +++
Sbjct: 180 NVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLL 239
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157
D++ G LP++ YN I G C+ D A+R+ + + KP+ TY L+
Sbjct: 240 DKVIKRGVLPNLFTYNLFIQ--GLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLC 297
Query: 158 AAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
+ + M G D + Y LI +
Sbjct: 298 KNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 145/328 (44%), Gaps = 23/328 (7%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102
+NT++ L R ++ M L+ P ++ LI G + +L+ +M
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRM 432
Query: 103 KANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160
K + P+V N ++ G C++ + A+ F +M+K VK N TY+ L++AC +
Sbjct: 433 KEDEIKPNVVTVNTIVG--GMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVS 490
Query: 161 QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220
++ M AG D Y LI+ R D A +++E +++ G S++
Sbjct: 491 NVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQ--VRRDHDAIRVVEKLKE--GGFSLDL 546
Query: 221 SGNNAENEMMGV-----SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275
A N ++G+ + E++Y + T + + G + Y+ + KD ++
Sbjct: 547 L---AYNMLIGLFCDKNNAEKVYEMLTD--MEKEGKKPDSI--TYNTLISFFGKHKDFES 599
Query: 276 METLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY-ICSEKFPPAELYATLV 334
+E ++E +++D P V I Y G++D K+F+D + S+ P +Y L+
Sbjct: 600 VERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILI 659
Query: 335 EG-AMFGYTPKGMQLAQDTLVNMNSRNI 361
+ G + + L ++ + M N+
Sbjct: 660 NAFSKLGNFGQALSLKEEMKMKMVRPNV 687
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQM 102
YNT+++ + F + + + M DG+ PT + ++I L + F+D
Sbjct: 584 YNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMG 643
Query: 103 KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
+ P+ +YN LI+ K N QA+ + EEMK V+PN +TY L Q
Sbjct: 644 LHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQG 703
Query: 163 DPVYAIVRDMT 173
+ + ++ +M
Sbjct: 704 ETLLKLMDEMV 714
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 18/187 (9%)
Query: 9 RHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMM 68
RHH G + FF+ + + N Y T++ + S Y+ M+
Sbjct: 453 RHH---GLNMAVVFFM------DMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKML 503
Query: 69 LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128
G P ++++LI G + R D +++K GF D+ YN LI + N++
Sbjct: 504 EAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAE 563
Query: 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM---------TAAGAGL 179
+ + +M+K KP+ TY L++ + V ++ M T GA +
Sbjct: 564 KVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVI 623
Query: 180 DKFCYAG 186
D +C G
Sbjct: 624 DAYCSVG 630
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N NT+V + + + DM +GV+ + +LI S ++ ++
Sbjct: 440 NVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWY 499
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
++M G PD +Y LIS + + AIR+ E++K+ + Y L+
Sbjct: 500 EKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDK 559
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
+ VY ++ DM G D Y LI+
Sbjct: 560 NNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/282 (18%), Positives = 105/282 (37%), Gaps = 37/282 (13%)
Query: 32 YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV---QPTRDLFHSLIVGTMK 88
++ + N+ ++SL R D+ D+M + P + S + M
Sbjct: 250 FSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMD 309
Query: 89 GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE------V 142
SR+ D D++K PDV LI+ K + D+A+ +FE+M+ +
Sbjct: 310 ISRMNDLVLKMDEVKIR---PDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVI 366
Query: 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDM----------TAAGAGLDKFCYAGLITAHT 192
K + + L++ G+L ++ M +D +C AG +
Sbjct: 367 KADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKL---- 422
Query: 193 NKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF 252
+TA +++ +++ + +V T + G+ + N+ ++
Sbjct: 423 -------ETAKEVVSRMKEDEIKPNVVT----VNTIVGGMCRHHGLNMAVVFFMDMEKEG 471
Query: 253 LSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI 294
+ + Y HAC + +V+ E + + SPD I
Sbjct: 472 VKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKI 513
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 63 VYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
++ DM L V P +++ LI K +++MK P+V YN L
Sbjct: 638 LFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCL 697
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
+ + +++ +EM + +PN T L+ + + +L
Sbjct: 698 NEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDEL 738
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96
+ ++ Y T+V +L ++F + + D+M+ DG QP ++ LI + + L +
Sbjct: 360 FKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAM 419
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
+QM+ G PD Y LI + K D A+ +++ M+ + P+ TY ++N
Sbjct: 420 NVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189
AG L + + +M +D+ C L+T
Sbjct: 480 GKAGHLPAAHKLFCEM------VDQGCTPNLVT 506
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 28/288 (9%)
Query: 16 GALGR--RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ 73
G LGR +F + +E R N YN ++ S +V++ M G +
Sbjct: 372 GNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCK 431
Query: 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133
P R + +LI K L +M+A G PD Y+ +I+ GK + A ++
Sbjct: 432 PDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKL 491
Query: 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL--ITAH 191
F EM PN TY +++ A A + RDM AG DK Y+ + + H
Sbjct: 492 FCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGH 551
Query: 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGG 251
+ A+ T++ Q K W + E +Y L + + G
Sbjct: 552 CGYLEEAEAVFTEM-----QQKNW----------------IPDEPVYGLLVDLW--GKAG 588
Query: 252 FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
+ + Y HA +V +LL + K + Y ++QN+
Sbjct: 589 NVEKAWQWYQAMLHAGLR-PNVPTCNSLLSTFLRVNKIAEAYELLQNM 635
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 69/160 (43%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N YN ++ R + +Y DM G +P + + ++ L++
Sbjct: 503 NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVF 562
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M+ ++PD VY L+ + GK N ++A + ++ M ++PN T LL+
Sbjct: 563 TEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRV 622
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199
++ Y ++++M A G Y L++ T+ + D
Sbjct: 623 NKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLD 662
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%)
Query: 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156
FF + GF D Y ++ G+ K ++ +EM + +PN TY L+++
Sbjct: 350 FFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSY 409
Query: 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
A L+ + M AG D+ Y LI H
Sbjct: 410 GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIH 444
>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790,
mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3
SV=1
Length = 799
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 15/191 (7%)
Query: 32 YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91
+ R Y S Y + SL + DV M V+P R + +I K +
Sbjct: 547 FVRLEYPLRKSVYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNN 606
Query: 92 LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151
+++ D M G +PD+ Y +I + +A +FE+MK+ +KP+ TY
Sbjct: 607 VREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTV 666
Query: 152 LLN-----------ACAAAGQLDPVYA--IVRDMTAAGAGLDKFCYAGLI--TAHTNKIP 196
LL+ C+ G++ A ++R+ +AAG GLD CY LI N +
Sbjct: 667 LLDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLE 726
Query: 197 RADDTATKIIE 207
+A + ++I+
Sbjct: 727 QAAELFDRMID 737
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YN +L+ R ++ +M G+ P + +LI G ++ D D+M
Sbjct: 391 YNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMI 450
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
NG PD+ YN L+S + + ++ + I+E MK KPN T
Sbjct: 451 GNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVT 495
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 135/333 (40%), Gaps = 37/333 (11%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y+ +V + RR + D+ +M G P ++ L+ K +++ QM+
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344
Query: 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163
A G P+ Y+ L+++ G+ D ++F EMK P+ TY L+ G
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404
Query: 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE------LVEQSKGWSS 217
V + DM D Y G+I A D A KI++ +V SK ++
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHED--ARKILQYMTANDIVPSSKAYTG 462
Query: 218 V-ETSGNNAENEMMGVSKEELYNL---PTAEYVHR------RGGF-------LSRLLTV- 259
V E G A E V+ ++ + P+ E H RGG LSRL+
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
Query: 260 ---YHVAFHACAEL-----KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNG 311
F+A E K +A++T ++M +K R PD + + Y + +D
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDM-EKSRCDPDERTLEAVLSVYSFARLVDEC 581
Query: 312 HKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344
+ FE+ S+ P Y ++ A++G T +
Sbjct: 582 REQFEEMKASDILPSIMCYCMML--AVYGKTER 612
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 145/358 (40%), Gaps = 63/358 (17%)
Query: 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121
+V+D+M GV + + +LI + R + + D+MK P + YN +I+ C
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINAC 221
Query: 122 GKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
+ + + + +F EM+ ++P+ TY LL+ACA G D + R M G D
Sbjct: 222 ARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD 281
Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELV-EQSKGWSSVETSGNNAENEMMGVSKEELYN 239
Y+ L+ K+ R + K+ +L+ E + G S
Sbjct: 282 LTTYSHLVETF-GKLRRLE----KVCDLLGEMASGGS----------------------- 313
Query: 240 LPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQ 297
LP +T Y+V A A+ ++ + ++ +P + Y V+
Sbjct: 314 LPD--------------ITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLL 359
Query: 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF---GYTPKGMQLAQDTLV 354
N+ + SG D+ ++F + S P A Y L+E +F GY + + L D
Sbjct: 360 NL--FGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE--VFGEGGYFKEVVTLFHD--- 412
Query: 355 NMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPA----VEAY 408
M NI P M + ++ A K G + A I M A I PS A +EA+
Sbjct: 413 -MVEENI--EPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF 467
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 18/181 (9%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E N +A+ YN ++ F + ++ DM+ + ++P + + +I KG
Sbjct: 377 EMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGG 436
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+D M AN +P Y +I G+ ++A+ F M + P+ +T+
Sbjct: 437 LHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFH 496
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
LL + A G + AI+ + +G IPR DT IE +
Sbjct: 497 SLLYSFARGGLVKESEAILSRLVDSG------------------IPRNRDTFNAQIEAYK 538
Query: 211 Q 211
Q
Sbjct: 539 Q 539
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 125/325 (38%), Gaps = 40/325 (12%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E + + + Y ++ + R+ ++ D M + + P+ ++++I +G
Sbjct: 165 DEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARG 224
Query: 90 S-RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
+ +M+ G PD+ YN L+S C D+A +F M + P+ T
Sbjct: 225 GLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTT 284
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK-------------- 194
Y L+ +L+ V ++ +M + G+ D Y L+ A+
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344
Query: 195 ----IPRADDTATKIIELVEQSKGWSSV-----ETSGNNAENEMMGVSKEELYNLPTAEY 245
P A +T + ++ L QS + V E +N + + YN+
Sbjct: 345 AAGCTPNA-NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAA------TYNILIE-- 395
Query: 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
V GG+ ++T++H E D++ E ++ K D ++Q Y+ +
Sbjct: 396 VFGEGGYFKEVVTLFHDMVEENIE-PDMETYEGIIFACGKGGLHEDARKILQ----YMTA 450
Query: 306 GDIDNGHKVFEDYICSEKFPPAELY 330
DI K + I E F A LY
Sbjct: 451 NDIVPSSKAYTGVI--EAFGQAALY 473
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 71 GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130
G+ RD F++ I +G + ++ M+ + PD ++SV + D+
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDEC 581
Query: 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190
FEEMK ++ P+ Y +L + D V ++ +M + ++ +
Sbjct: 582 REQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLS-----NRVSNIHQVIG 636
Query: 191 HTNKIPRADDTATKIIELV 209
K DD+ +I+E V
Sbjct: 637 QMIKGDYDDDSNWQIVEYV 655
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 9/337 (2%)
Query: 2 RLLQSIYRHHKSVGG-ALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLL 60
R L SI +K + A ++F V + E+ R + YN ++ + + L
Sbjct: 80 RPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLA 139
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
+ MM G +P+ SL+ G G R+ D DQM G+ PD + LI
Sbjct: 140 LALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 199
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
+ +A+ + + M + +PN TY ++N G D ++ M AA D
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 259
Query: 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240
+ +I + K DD E+ ++KG + ++ + + + +
Sbjct: 260 VVIFNTIIDSLC-KYRHVDDALNLFKEM--ETKGIRPNVVTYSSLISCLCSYGRWSDASQ 316
Query: 241 PTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNI 299
++ + ++ ++ L ++ A E K V+A + +M+K+ PD++ +
Sbjct: 317 LLSDMIEKK---INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSLV 372
Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
+ +D ++FE + + FP Y TL++G
Sbjct: 373 NGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 61/154 (39%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N +N ++ + + +F +YDDM+ + P ++SL+ G RL
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF 388
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+ M + PDV YN LI K K + +F EM + + TY L+
Sbjct: 389 EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 448
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193
G D + + M + G D Y+ L+ N
Sbjct: 449 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 482
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 3/172 (1%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
++ +R+ + YN++V R + +++ M+ P +++LI G K
Sbjct: 354 DDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKS 413
Query: 90 SRLQD-TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148
R++D T FR +M G + D Y LI + D A ++F++M V P+ T
Sbjct: 414 KRVEDGTELFR-EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 472
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
Y LL+ G+L+ + M + LD + Y +I K + DD
Sbjct: 473 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC-KAGKVDD 523
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E + R + Y T++ L + V+ M+ DGV P + L+ G
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+L+ D M+ + D+ +Y +I K D +F + VKPN TY
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYN 544
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
+++ + L YA+++ M G + Y LI AH
Sbjct: 545 TMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E + N Y+++++ L S R+ + DM+ + P F++LI +K
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
+ + D M PD+ YN L++ G C + D+A ++FE M + P+
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVN--GFCMHDRLDKAKQMFEFMVSKDCFPDVV 401
Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
TY L+ + +++ + R+M+ G D Y LI
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 21/337 (6%)
Query: 3 LLQSIYRHHKSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRD 62
L+ ++ H+K+ A + +R N Y VV L + L +
Sbjct: 196 LIHGLFLHNKASEAV---------ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALN 246
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS-VC 121
+ + M ++ +F+++I K + D +M+ G P+V Y+ LIS +C
Sbjct: 247 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 306
Query: 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181
+ SD A ++ +M + ++ PN T+ L++A G+ + DM D
Sbjct: 307 SYGRWSD-ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365
Query: 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLP 241
F Y L+ + D A ++ E + + V T + E+ L
Sbjct: 366 FTYNSLVNGFC--MHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL- 422
Query: 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNI 299
E HR G + +T Y D + + + + D PD+ Y ++ +
Sbjct: 423 FREMSHR--GLVGDTVT-YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479
Query: 300 RCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEG 336
C ++G ++ +VF+ SE +Y T++EG
Sbjct: 480 LC--NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
YNT++ +R +++ +M G+ + +LI G + QM
Sbjct: 403 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 104 ANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161
++G PD+ Y+ L+ G C N ++A+ +F+ M+K E+K + Y ++ AG+
Sbjct: 463 SDGVPPDIMTYSILLD--GLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Query: 162 LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194
+D + + ++ G + Y +I+ +K
Sbjct: 521 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 553
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/357 (20%), Positives = 132/357 (36%), Gaps = 22/357 (6%)
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
+L D M + LP + +N L+S K K D I + E+M++ E+ TY
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210
L+N Q+ A++ M G + L+ + + R D + ++VE
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHG-KRISDAVALVDQMVE 183
Query: 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270
G+ + + + +K V R G L+T Y V + +
Sbjct: 184 M--GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR--GCQPNLVT-YGVVVNGLCKR 238
Query: 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330
D LL ++ + DV I I +D+ +F++ P Y
Sbjct: 239 GDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 298
Query: 331 ATLVEG-AMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYI 389
++L+ +G QL D + ++P + + L+ A K G + A +
Sbjct: 299 SSLISCLCSYGRWSDASQLLSDMIEKK------INPNLVTFNALIDAFVKEGKFVEAEKL 352
Query: 390 WDLMQARKITPSLPAVEAYYNG--LKDREVPADDPRLVVVSR-------AYDNLLRG 437
+D M R I P + + NG + DR A +VS+ Y+ L++G
Sbjct: 353 YDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG 409
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103
Y+ ++ L + + +V+D M ++ ++ ++I G K ++ D + +
Sbjct: 473 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 532
Query: 104 ANGFLPDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162
G P+V YN +IS +C K + +A + ++MK+ PN TY L+ A G
Sbjct: 533 LKGVKPNVVTYNTMISGLCSK-RLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDK 591
Query: 163 DPVYAIVRDMTAA 175
++R+M +
Sbjct: 592 AASAELIREMRSC 604
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 4/163 (2%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E R+ + Y +++ ++ +M G++P F LI G K
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
++D F + M G P+V Y LI G CK D A + EM K ++PN T
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLID--GLCKEGDLDSANELLHEMWKIGLQPNIFT 493
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
Y ++N +G ++ +V + AAG D Y L+ A+
Sbjct: 494 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 536
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
E R+ N+ Y +++ L + + + +M+ G+ P ++ +LI G K
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQ 147
++ F +M + PDV Y +IS G C+ D +A ++F EM ++P+
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIIS--GFCQIGDMVEAGKLFHEMFCKGLEPDSV 422
Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
T+ L+N AG + + + M AG + Y LI
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 463
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%)
Query: 35 RNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQD 94
+ A NA+ +N++V + +Y DM GV P + +L+ G K +++
Sbjct: 590 KGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKE 649
Query: 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139
+F +MK GF V+ Y+ LI K K +A +F++M++
Sbjct: 650 AWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122
V++ M+ G P + +LI G K L +M G P++ YN +++
Sbjct: 443 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502
Query: 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG---- 178
K N ++A+++ E + + + TY L++A +G++D I+++M G
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562
Query: 179 -----LDKFCYAGLI 188
++ FC G++
Sbjct: 563 TFNVLMNGFCLHGML 577
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%)
Query: 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120
+++ +M+ G+QPT F+ L+ G L+D + M A G P+ +N L+
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605
Query: 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
N A I+++M V P+G+TY L+ A + + + ++M G +
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665
Query: 181 KFCYAGLI 188
Y+ LI
Sbjct: 666 VSTYSVLI 673
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 35 RNYANNASEYNTVVTSLTSQRRFFLLRDVY---DDMMLDGVQPTRDLFHSLIVGTMKGSR 91
+ Y + Y+TVV RF L V+ + M G++P ++ S+I + +
Sbjct: 275 KGYTPDVISYSTVVNGYC---RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK 331
Query: 92 LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD--QAIRIFEEMKKYEVKPNGQTY 149
L + +M G LPD VY LI G CK D A + F EM ++ P+ TY
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLID--GFCKRGDIRAASKFFYEMHSRDITPDVLTY 389
Query: 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
+++ G + + +M G D + LI +
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 62/152 (40%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y T++ L + ++ +M G+QP ++S++ G K +++
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+ +A G D Y L+ K D+A I +EM ++P T+ L+N
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191
G L+ ++ M A G + + L+ +
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 145/393 (36%), Gaps = 73/393 (18%)
Query: 102 MKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTY---------V 150
M+ G+ PDV Y+ +++ G C+ D+ ++ E MK+ +KPN Y +
Sbjct: 272 MELKGYTPDVISYSTVVN--GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRI 329
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA--------HTNKIPRADDTA 202
C L A I+ D +D FC G I A H+ I T
Sbjct: 330 CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTY 389
Query: 203 TKII-------ELVEQSKGWSSVETSGNNAENEMMGVSKEELYN-------LPTAEYVHR 248
T II ++VE K + + G ++ V+ EL N + A VH
Sbjct: 390 TAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS----VTFTELINGYCKAGHMKDAFRVHN 445
Query: 249 ---RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305
+ G ++T + C E D+ + LL + K P+++ + S
Sbjct: 446 HMIQAGCSPNVVTYTTLIDGLCKE-GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504
Query: 306 GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLS 364
G+I+ K+ ++ + Y TL++ Y G M AQ+ L M + L
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTLMD----AYCKSGEMDKAQEILKEMLGKG--LQ 558
Query: 365 PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP----------------SLPAVEAY 408
P + + +L+ G + + M A+ I P +L A A
Sbjct: 559 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAI 618
Query: 409 YNGLKDREVPADDPRLVVVSRAYDNLLRGRPGA 441
Y + R V D + Y+NL++G A
Sbjct: 619 YKDMCSRGVGPD-------GKTYENLVKGHCKA 644
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 1/144 (0%)
Query: 67 MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126
M+ G+ P F+SL+ + L+ M + G PD Y L+ K +N
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN 646
Query: 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186
+A +F+EMK + TY L+ + + M G DK +
Sbjct: 647 MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF-D 705
Query: 187 LITAHTNKIPRADDTATKIIELVE 210
+ K R D I E++E
Sbjct: 706 FFSDTKYKGKRPDTIVDPIDEIIE 729
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E RN + ++ ++ + + +++Y++M+ G+ P ++SLI G K +
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150
L + D M + G PD+ Y+ LI+ K K D +R+F E+ + PN TY
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 151 CLLNACAAAGQLDPVYAIVRDMTAAGA 177
L+ +G+L+ + ++M + G
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGV 451
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 17/382 (4%)
Query: 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
+ Y + ++T+V + R + D M+ +P +LI G R+
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
+ D+M GF PD Y +++ K NS A+ +F +M++ +K + Y ++
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252
Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213
++ G D ++ +M G D Y+ LI N + DD A + E++ ++
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND-GKWDDGAKMLREMIGRNI 311
Query: 214 GWSSVETSG--NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271
V S + E + +ELYN E + R G +T + C E
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYN----EMITR--GIAPDTITYNSLIDGFCKE-N 364
Query: 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA 331
+ + +++ PD+ I Y + +D+G ++F + P Y
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 332 TLVEGAMFGYTPKG-MQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390
TLV G+ G + A++ M SR + P + + +L+ +G A I+
Sbjct: 425 TLV----LGFCQSGKLNAAKELFQEMVSRGV--PPSVVTYGILLDGLCDNGELNKALEIF 478
Query: 391 DLMQARKITPSLPAVEAYYNGL 412
+ MQ ++T + +G+
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGM 500
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 19 GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL 78
G R F E + + N YNT+V + ++++ +M+ GV P+
Sbjct: 404 GMRLF------REISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 457
Query: 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEE 136
+ L+ G L ++M+ + + +YN +I G C S D A +F
Sbjct: 458 YGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH--GMCNASKVDDAWSLFCS 515
Query: 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196
+ VKP+ TY ++ G L + R M G D F Y LI AH
Sbjct: 516 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL---- 571
Query: 197 RADDTATKIIELVEQSK--GWSS 217
+EL+E+ K G+S+
Sbjct: 572 -GGSGLISSVELIEEMKVCGFSA 593
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 5/183 (2%)
Query: 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS 90
E R A + YN+++ + ++D M+ G +P + LI K
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399
Query: 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQT 148
R+ D ++ + G +P+ YN L V G C++ + A +F+EM V P+ T
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTL--VLGFCQSGKLNAAKELFQEMVSRGVPPSVVT 457
Query: 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208
Y LL+ G+L+ I M + L Y +I N + DD + L
Sbjct: 458 YGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA-SKVDDAWSLFCSL 516
Query: 209 VEQ 211
++
Sbjct: 517 SDK 519
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 4/153 (2%)
Query: 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG 89
+E R + Y ++ L ++++ M + +++ +I G
Sbjct: 444 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 503
Query: 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS--DQAIRIFEEMKKYEVKPNGQ 147
S++ D + + G PDV YN +I G CK +A +F +MK+ P+
Sbjct: 504 SKVDDAWSLFCSLSDKGVKPDVVTYNVMIG--GLCKKGSLSEADMLFRKMKEDGCTPDDF 561
Query: 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180
TY L+ A L ++ +M G D
Sbjct: 562 TYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 594
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%)
Query: 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ 93
+ + N Y ++ R +++DM+ G++P + ++ G ++ +
Sbjct: 290 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 349
Query: 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153
D MK+ G P+V Y +I K + + AI F++M ++P+ Y CL+
Sbjct: 350 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 409
Query: 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-KIPRADDTATKIIELVEQS 212
+LD VY ++++M G D Y LI N K+P + T+I + Q+
Sbjct: 410 TGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMP---EHGTRIYNKMIQN 466
Query: 213 KGWSSVET 220
+ S+ T
Sbjct: 467 EIEPSIHT 474
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%)
Query: 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFR 99
N Y ++ Q + +DDM+ G+QP ++ LI G +L +
Sbjct: 366 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 425
Query: 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159
+M+ G PD YN LI + K + RI+ +M + E++P+ T+ ++ + A
Sbjct: 426 KEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVA 485
Query: 160 GQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188
+ A+ +M G D Y LI
Sbjct: 486 RNYEMGRAVWDEMIKKGICPDDNSYTVLI 514
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 10/194 (5%)
Query: 21 RFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFH 80
RFF +A R+ +A+++ YN++++ L R+F + V ++M G+
Sbjct: 179 RFFCWAA-----ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTI 233
Query: 81 SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140
++ R + F + MK F V N L+ G+ K +A +F+++K+
Sbjct: 234 AMKAFAAAKERKKAVGIF-ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKE- 291
Query: 141 EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200
PN TY LLN L I DM G D + ++ + ++D
Sbjct: 292 RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD- 350
Query: 201 TATKIIELVEQSKG 214
A K+ ++ +SKG
Sbjct: 351 -AIKLFHVM-KSKG 362
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 134/379 (35%), Gaps = 95/379 (25%)
Query: 63 VYDDMMLDGVQPTRDLFHSLIVGTM---KGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119
V D+M LD L H LIV + + +R FF + GF D YN ++S
Sbjct: 150 VLDEMKLD-------LSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMS 202
Query: 120 VCGK----------------------------------CKNSDQAIRIFEEMKKYEVKPN 145
+ K K +A+ IFE MKKY+ K
Sbjct: 203 ILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 262
Query: 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205
+T CLL++ A +L ++ D + Y L+ ++
Sbjct: 263 VETINCLLDSLGRA-KLGKEAQVLFDKLKERFTPNMMTYTVLLNGW-----------CRV 310
Query: 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265
L+E ++ W+ + G + V E L R S + ++HV
Sbjct: 311 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLL----------RSMKKSDAIKLFHV--- 357
Query: 266 ACAELKDVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323
+K P+V Y +M IR + ++ + F+D + S
Sbjct: 358 -----------------MKSKGPCPNVRSYTIM--IRDFCKQSSMETAIEYFDDMVDSGL 398
Query: 324 FPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGY 383
P A +Y L+ G FG T K + + L M + + + L+ + A +K +
Sbjct: 399 QPDAAVYTCLITG--FG-TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEH 455
Query: 384 TTANYIWDLMQARKITPSL 402
T I++ M +I PS+
Sbjct: 456 GTR--IYNKMIQNEIEPSI 472
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,537,976
Number of Sequences: 539616
Number of extensions: 6919285
Number of successful extensions: 19218
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 15445
Number of HSP's gapped (non-prelim): 2951
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)