Query 013323
Match_columns 445
No_of_seqs 361 out of 1981
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 02:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-59 3.9E-64 472.2 40.4 367 31-409 427-796 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9.7E-58 2.1E-62 459.7 42.0 387 28-428 459-854 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2E-54 4.4E-59 442.5 31.2 392 32-442 244-681 (857)
4 PLN03081 pentatricopeptide (PP 100.0 8.8E-54 1.9E-58 428.0 27.5 388 29-441 110-517 (697)
5 PLN03081 pentatricopeptide (PP 100.0 8.5E-53 1.8E-57 420.9 30.6 373 34-430 80-454 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.3E-52 7.2E-57 426.2 30.9 382 30-429 141-616 (857)
7 PRK11788 tetratricopeptide rep 99.9 3.3E-19 7.2E-24 167.7 31.9 313 49-419 43-364 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 1.5E-17 3.3E-22 173.6 37.3 368 38-428 530-897 (899)
9 KOG4422 Uncharacterized conser 99.8 5E-18 1.1E-22 148.0 27.1 357 32-430 198-589 (625)
10 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.3E-22 157.5 29.5 280 39-366 67-354 (389)
11 TIGR02917 PEP_TPR_lipo putativ 99.8 2.1E-16 4.7E-21 165.0 37.8 363 36-423 460-824 (899)
12 KOG4422 Uncharacterized conser 99.7 9.2E-15 2E-19 127.9 30.0 313 75-432 206-553 (625)
13 PRK15174 Vi polysaccharide exp 99.6 5.7E-12 1.2E-16 125.1 37.0 131 254-396 243-381 (656)
14 PRK15174 Vi polysaccharide exp 99.6 3.8E-12 8.2E-17 126.3 33.3 326 43-427 44-377 (656)
15 KOG4318 Bicoid mRNA stability 99.6 1.7E-13 3.6E-18 130.1 17.8 90 63-164 12-101 (1088)
16 TIGR00990 3a0801s09 mitochondr 99.5 1.1E-10 2.5E-15 116.0 36.1 359 46-427 132-567 (615)
17 PF13041 PPR_2: PPR repeat fam 99.5 3.8E-14 8.3E-19 89.6 6.2 49 109-157 1-49 (50)
18 PF13041 PPR_2: PPR repeat fam 99.5 4.8E-14 1E-18 89.1 6.6 50 39-88 1-50 (50)
19 KOG4318 Bicoid mRNA stability 99.5 8.8E-12 1.9E-16 118.7 20.5 252 28-346 12-286 (1088)
20 PRK11447 cellulose synthase su 99.5 5.9E-10 1.3E-14 118.4 36.4 363 40-425 302-734 (1157)
21 TIGR00990 3a0801s09 mitochondr 99.4 1.4E-09 3E-14 108.3 35.0 297 79-396 130-496 (615)
22 PRK10049 pgaA outer membrane p 99.4 5.2E-09 1.1E-13 106.4 36.8 155 46-207 20-174 (765)
23 PRK10747 putative protoheme IX 99.4 1.2E-09 2.6E-14 102.3 29.6 280 54-394 97-388 (398)
24 PRK10049 pgaA outer membrane p 99.4 5.9E-09 1.3E-13 106.0 35.8 369 39-427 47-452 (765)
25 PRK14574 hmsH outer membrane p 99.4 4.2E-09 9.2E-14 105.5 33.9 366 46-428 73-476 (822)
26 PF13429 TPR_15: Tetratricopep 99.4 4.4E-12 9.5E-17 113.3 11.7 259 46-356 13-274 (280)
27 PRK11447 cellulose synthase su 99.3 4.6E-09 9.9E-14 111.8 34.5 351 39-409 383-758 (1157)
28 PF13429 TPR_15: Tetratricopep 99.3 6.3E-11 1.4E-15 105.9 12.5 157 258-424 111-270 (280)
29 TIGR00540 hemY_coli hemY prote 99.3 1.6E-08 3.5E-13 95.2 29.3 129 45-178 86-219 (409)
30 PRK10747 putative protoheme IX 99.3 1.1E-08 2.4E-13 95.9 27.8 283 89-425 97-384 (398)
31 PRK14574 hmsH outer membrane p 99.3 2.1E-08 4.6E-13 100.6 31.0 327 50-429 43-394 (822)
32 KOG4626 O-linked N-acetylgluco 99.3 3.2E-09 6.9E-14 98.0 22.9 296 39-358 114-416 (966)
33 TIGR00540 hemY_coli hemY prote 99.2 2.6E-08 5.5E-13 93.9 27.8 292 79-426 85-394 (409)
34 COG3071 HemY Uncharacterized e 99.2 4.6E-07 1E-11 79.9 31.1 290 47-394 88-388 (400)
35 COG2956 Predicted N-acetylgluc 99.1 2.8E-07 6E-12 78.9 27.5 292 53-398 47-349 (389)
36 PRK09782 bacteriophage N4 rece 99.1 1.6E-07 3.5E-12 96.4 29.4 230 40-321 476-706 (987)
37 TIGR02521 type_IV_pilW type IV 99.1 1.6E-07 3.5E-12 81.3 25.4 96 77-174 32-127 (234)
38 PRK09782 bacteriophage N4 rece 99.1 4E-07 8.6E-12 93.6 31.6 227 110-395 476-705 (987)
39 COG3071 HemY Uncharacterized e 99.1 3.2E-07 6.9E-12 80.8 25.6 285 89-423 97-382 (400)
40 KOG1126 DNA-binding cell divis 99.1 8.4E-08 1.8E-12 89.7 23.0 282 56-402 334-626 (638)
41 KOG1155 Anaphase-promoting com 99.0 1.5E-06 3.3E-11 78.0 29.0 311 49-416 235-554 (559)
42 TIGR02521 type_IV_pilW type IV 99.0 3.4E-07 7.4E-12 79.2 25.2 202 39-285 29-231 (234)
43 PF12854 PPR_1: PPR repeat 99.0 7.8E-10 1.7E-14 62.7 3.9 32 106-137 2-33 (34)
44 KOG2003 TPR repeat-containing 99.0 3.2E-06 6.9E-11 75.8 27.7 145 263-418 564-710 (840)
45 PF12854 PPR_1: PPR repeat 99.0 9.8E-10 2.1E-14 62.3 3.8 34 286-319 1-34 (34)
46 PRK12370 invasion protein regu 99.0 2.6E-06 5.6E-11 83.6 30.2 81 92-174 320-400 (553)
47 KOG4626 O-linked N-acetylgluco 98.9 3.3E-07 7.1E-12 85.1 21.7 351 44-423 51-409 (966)
48 KOG2076 RNA polymerase III tra 98.9 7.8E-06 1.7E-10 79.4 30.1 356 50-419 148-543 (895)
49 PRK12370 invasion protein regu 98.9 2.3E-06 4.9E-11 84.0 27.1 266 74-397 254-536 (553)
50 PF12569 NARP1: NMDA receptor- 98.8 8.1E-06 1.8E-10 77.8 28.5 303 49-394 12-332 (517)
51 COG2956 Predicted N-acetylgluc 98.8 1.7E-05 3.8E-10 68.2 25.8 265 46-362 74-350 (389)
52 KOG1126 DNA-binding cell divis 98.8 3.2E-06 7E-11 79.4 22.7 264 42-364 354-625 (638)
53 KOG2003 TPR repeat-containing 98.8 9.2E-06 2E-10 72.9 23.9 276 49-376 427-705 (840)
54 KOG2076 RNA polymerase III tra 98.7 3.7E-05 8E-10 74.9 28.6 352 30-394 159-553 (895)
55 KOG0495 HAT repeat protein [RN 98.7 0.00024 5.2E-09 67.1 31.9 360 43-431 518-880 (913)
56 PF12569 NARP1: NMDA receptor- 98.6 2E-05 4.3E-10 75.2 23.3 283 84-423 12-326 (517)
57 KOG1840 Kinesin light chain [C 98.6 3.7E-05 8.1E-10 72.6 23.9 245 41-319 199-477 (508)
58 KOG1155 Anaphase-promoting com 98.6 5.6E-05 1.2E-09 68.3 23.1 239 32-320 253-494 (559)
59 KOG1915 Cell cycle control pro 98.6 0.00034 7.3E-09 63.6 27.5 352 28-394 159-583 (677)
60 KOG0495 HAT repeat protein [RN 98.5 0.001 2.2E-08 63.1 33.4 354 48-423 413-774 (913)
61 cd05804 StaR_like StaR_like; a 98.5 0.00062 1.3E-08 63.2 30.5 307 43-395 8-335 (355)
62 KOG2047 mRNA splicing factor [ 98.5 8.9E-05 1.9E-09 69.7 23.6 338 29-394 232-613 (835)
63 KOG1840 Kinesin light chain [C 98.5 6.6E-05 1.4E-09 71.0 23.2 207 77-318 200-435 (508)
64 TIGR00756 PPR pentatricopeptid 98.5 2.8E-07 6.2E-12 53.0 4.4 34 42-75 1-34 (35)
65 PRK11189 lipoprotein NlpI; Pro 98.5 0.00031 6.7E-09 63.1 25.9 219 54-323 39-267 (296)
66 KOG1129 TPR repeat-containing 98.4 1.6E-05 3.5E-10 68.5 15.6 231 45-321 227-458 (478)
67 PF13812 PPR_3: Pentatricopept 98.4 3.7E-07 8.1E-12 52.1 4.2 33 42-74 2-34 (34)
68 TIGR00756 PPR pentatricopeptid 98.4 4E-07 8.7E-12 52.4 4.3 33 113-145 2-34 (35)
69 KOG1129 TPR repeat-containing 98.4 4.6E-05 9.9E-10 65.8 18.0 238 71-360 218-459 (478)
70 KOG1173 Anaphase-promoting com 98.4 0.0006 1.3E-08 63.4 25.7 276 86-414 254-534 (611)
71 PF13812 PPR_3: Pentatricopept 98.4 4.4E-07 9.5E-12 51.8 3.8 32 113-144 3-34 (34)
72 cd05804 StaR_like StaR_like; a 98.4 0.00052 1.1E-08 63.8 26.2 302 79-432 9-337 (355)
73 PF08579 RPM2: Mitochondrial r 98.4 7.5E-06 1.6E-10 59.2 10.2 73 85-157 34-115 (120)
74 KOG2002 TPR-containing nuclear 98.4 0.001 2.2E-08 65.9 27.7 310 39-397 450-799 (1018)
75 KOG1070 rRNA processing protei 98.4 0.00066 1.4E-08 69.6 27.1 129 41-174 1458-1592(1710)
76 PRK11189 lipoprotein NlpI; Pro 98.3 0.00068 1.5E-08 61.0 25.1 201 42-287 65-266 (296)
77 PF04733 Coatomer_E: Coatomer 98.3 3.5E-05 7.7E-10 68.4 16.3 223 44-320 38-264 (290)
78 PF08579 RPM2: Mitochondrial r 98.3 6.9E-06 1.5E-10 59.3 9.3 80 44-123 28-116 (120)
79 KOG2002 TPR-containing nuclear 98.3 0.0015 3.3E-08 64.7 27.0 140 32-174 331-480 (1018)
80 KOG4340 Uncharacterized conser 98.3 0.00066 1.4E-08 58.1 21.1 294 42-394 11-337 (459)
81 PF10037 MRP-S27: Mitochondria 98.3 2.3E-05 4.9E-10 72.3 13.4 125 70-194 60-186 (429)
82 KOG1915 Cell cycle control pro 98.2 0.004 8.6E-08 57.0 29.6 131 38-174 104-235 (677)
83 KOG0547 Translocase of outer m 98.2 0.0043 9.2E-08 57.0 26.9 53 49-103 123-176 (606)
84 PF10037 MRP-S27: Mitochondria 98.2 2E-05 4.3E-10 72.7 11.6 124 36-159 61-186 (429)
85 KOG4340 Uncharacterized conser 98.2 0.00061 1.3E-08 58.3 19.3 292 77-422 11-330 (459)
86 PF01535 PPR: PPR repeat; Int 98.2 2.2E-06 4.8E-11 47.6 3.2 29 113-141 2-30 (31)
87 PF06239 ECSIT: Evolutionarily 98.1 4.7E-05 1E-09 62.3 11.4 101 74-174 45-167 (228)
88 PF01535 PPR: PPR repeat; Int 98.1 3.9E-06 8.4E-11 46.6 3.6 31 42-72 1-31 (31)
89 COG3063 PilF Tfp pilus assembl 98.1 0.004 8.6E-08 51.6 23.5 162 44-211 38-201 (250)
90 PF04733 Coatomer_E: Coatomer 98.1 7.3E-05 1.6E-09 66.4 12.7 248 51-359 11-265 (290)
91 KOG1070 rRNA processing protei 98.1 0.00059 1.3E-08 69.9 19.9 236 128-416 1442-1685(1710)
92 KOG0547 Translocase of outer m 98.0 0.0015 3.3E-08 59.8 20.0 226 53-320 338-565 (606)
93 KOG1174 Anaphase-promoting com 98.0 0.0058 1.3E-07 54.9 23.1 149 265-423 342-492 (564)
94 KOG3617 WD40 and TPR repeat-co 98.0 0.00039 8.5E-09 67.4 16.8 317 21-430 736-1108(1416)
95 COG3063 PilF Tfp pilus assembl 98.0 0.0059 1.3E-07 50.6 24.1 128 79-210 38-166 (250)
96 PF06239 ECSIT: Evolutionarily 98.0 0.0002 4.4E-09 58.7 12.4 113 26-138 30-166 (228)
97 PLN02789 farnesyltranstransfer 97.9 0.014 3E-07 52.8 26.4 216 43-304 39-267 (320)
98 KOG1156 N-terminal acetyltrans 97.9 0.023 5E-07 54.2 28.9 349 28-398 59-470 (700)
99 KOG1914 mRNA cleavage and poly 97.9 0.021 4.5E-07 53.4 29.6 129 258-395 367-500 (656)
100 TIGR03302 OM_YfiO outer membra 97.9 0.003 6.6E-08 54.8 19.4 183 76-321 33-232 (235)
101 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00067 1.4E-08 62.5 15.0 123 45-174 173-296 (395)
102 TIGR03302 OM_YfiO outer membra 97.8 0.0037 8E-08 54.2 18.8 167 38-212 30-232 (235)
103 KOG1128 Uncharacterized conser 97.8 0.003 6.5E-08 60.8 18.7 228 115-412 402-633 (777)
104 KOG2047 mRNA splicing factor [ 97.8 0.037 8E-07 52.9 27.7 142 44-193 141-293 (835)
105 PRK15359 type III secretion sy 97.8 0.0011 2.4E-08 52.4 13.4 93 81-175 29-121 (144)
106 KOG3081 Vesicle coat complex C 97.7 0.0058 1.2E-07 51.8 17.2 172 29-212 96-271 (299)
107 PRK15359 type III secretion sy 97.7 0.0014 3E-08 51.8 13.4 115 30-148 13-127 (144)
108 KOG1156 N-terminal acetyltrans 97.7 0.05 1.1E-06 52.1 27.1 135 52-189 52-187 (700)
109 PRK04841 transcriptional regul 97.7 0.054 1.2E-06 57.3 28.3 301 85-424 418-753 (903)
110 KOG3785 Uncharacterized conser 97.7 0.0059 1.3E-07 53.7 17.0 61 151-213 290-353 (557)
111 KOG2376 Signal recognition par 97.7 0.057 1.2E-06 51.1 26.4 118 48-177 19-141 (652)
112 PF09976 TPR_21: Tetratricopep 97.6 0.0031 6.6E-08 50.0 14.0 126 41-171 12-143 (145)
113 PRK10370 formate-dependent nit 97.6 0.0046 1E-07 51.7 15.6 120 54-176 52-174 (198)
114 KOG1128 Uncharacterized conser 97.6 0.0087 1.9E-07 57.8 18.4 83 254-337 550-633 (777)
115 KOG1173 Anaphase-promoting com 97.6 0.066 1.4E-06 50.4 26.1 285 38-335 241-530 (611)
116 PRK15179 Vi polysaccharide bio 97.6 0.0065 1.4E-07 60.7 18.4 138 34-175 79-217 (694)
117 KOG2376 Signal recognition par 97.6 0.073 1.6E-06 50.4 27.4 149 259-416 341-506 (652)
118 PRK15179 Vi polysaccharide bio 97.6 0.059 1.3E-06 54.1 24.7 162 107-321 82-245 (694)
119 PRK04841 transcriptional regul 97.5 0.16 3.4E-06 53.8 29.1 311 46-395 414-759 (903)
120 TIGR02552 LcrH_SycD type III s 97.5 0.0039 8.4E-08 48.7 13.1 96 78-175 19-114 (135)
121 PF12921 ATP13: Mitochondrial 97.5 0.0017 3.6E-08 49.6 10.2 81 256-336 1-97 (126)
122 KOG3785 Uncharacterized conser 97.5 0.024 5.1E-07 50.1 18.2 112 291-414 393-513 (557)
123 PRK10370 formate-dependent nit 97.5 0.045 9.7E-07 45.9 19.7 121 124-286 52-173 (198)
124 KOG1914 mRNA cleavage and poly 97.5 0.019 4.2E-07 53.5 18.5 151 127-321 347-501 (656)
125 PRK14720 transcript cleavage f 97.5 0.088 1.9E-06 53.8 24.8 218 39-303 29-268 (906)
126 TIGR02552 LcrH_SycD type III s 97.5 0.0046 1E-07 48.2 13.2 107 40-150 16-122 (135)
127 KOG3081 Vesicle coat complex C 97.5 0.04 8.8E-07 46.8 18.7 49 272-321 188-236 (299)
128 COG5010 TadD Flp pilus assembl 97.5 0.0065 1.4E-07 51.3 14.2 156 45-206 70-225 (257)
129 COG5010 TadD Flp pilus assembl 97.5 0.038 8.3E-07 46.8 18.7 88 85-174 75-162 (257)
130 KOG0985 Vesicle coat protein c 97.5 0.088 1.9E-06 53.1 23.4 115 146-316 1104-1218(1666)
131 PF05843 Suf: Suppressor of fo 97.4 0.0065 1.4E-07 54.0 14.5 142 42-188 2-147 (280)
132 PF05843 Suf: Suppressor of fo 97.4 0.0075 1.6E-07 53.6 14.2 143 147-335 2-148 (280)
133 KOG0985 Vesicle coat protein c 97.3 0.11 2.3E-06 52.5 22.4 232 38-319 1075-1306(1666)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.019 4.2E-07 53.1 16.2 125 148-320 171-296 (395)
135 PRK14720 transcript cleavage f 97.3 0.09 2E-06 53.7 21.9 146 258-413 117-268 (906)
136 cd00189 TPR Tetratricopeptide 97.2 0.0071 1.5E-07 43.1 10.4 83 88-172 12-94 (100)
137 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.019 4.1E-07 43.4 13.0 90 86-175 12-105 (119)
138 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.023 5E-07 42.9 13.4 98 42-141 3-106 (119)
139 KOG3616 Selective LIM binding 97.2 0.024 5.2E-07 54.9 15.6 154 4-172 512-674 (1636)
140 cd00189 TPR Tetratricopeptide 97.1 0.0094 2E-07 42.5 10.5 96 43-140 2-97 (100)
141 PF09976 TPR_21: Tetratricopep 97.1 0.025 5.3E-07 44.8 13.5 129 257-392 12-143 (145)
142 PF12921 ATP13: Mitochondrial 97.1 0.012 2.6E-07 44.9 10.8 82 112-193 3-100 (126)
143 COG4783 Putative Zn-dependent 97.1 0.094 2E-06 48.6 18.1 120 51-174 316-436 (484)
144 PF12895 Apc3: Anaphase-promot 97.0 0.0012 2.5E-08 46.7 4.7 81 89-171 2-83 (84)
145 KOG3941 Intermediate in Toll s 96.8 0.024 5.2E-07 48.5 11.3 102 73-174 64-187 (406)
146 PLN02789 farnesyltranstransfer 96.8 0.38 8.3E-06 43.6 25.8 208 79-335 40-263 (320)
147 KOG3616 Selective LIM binding 96.8 0.043 9.4E-07 53.2 13.9 108 50-170 741-848 (1636)
148 CHL00033 ycf3 photosystem I as 96.8 0.049 1.1E-06 44.3 12.9 61 79-139 38-100 (168)
149 PRK02603 photosystem I assembl 96.8 0.081 1.8E-06 43.2 14.2 114 78-196 37-166 (172)
150 PF12895 Apc3: Anaphase-promot 96.8 0.0028 6.1E-08 44.7 4.8 81 54-136 2-83 (84)
151 KOG3617 WD40 and TPR repeat-co 96.8 0.32 6.9E-06 48.3 19.5 247 40-357 725-994 (1416)
152 PRK02603 photosystem I assembl 96.8 0.083 1.8E-06 43.2 14.2 116 40-160 34-165 (172)
153 KOG2053 Mitochondrial inherita 96.8 0.73 1.6E-05 46.2 31.3 230 49-323 17-257 (932)
154 KOG3941 Intermediate in Toll s 96.8 0.031 6.7E-07 47.9 11.3 101 38-138 64-186 (406)
155 KOG1125 TPR repeat-containing 96.7 0.15 3.3E-06 48.3 16.8 219 86-355 295-523 (579)
156 PF13170 DUF4003: Protein of u 96.7 0.19 4.2E-06 44.8 16.5 131 273-408 78-223 (297)
157 KOG1125 TPR repeat-containing 96.6 0.69 1.5E-05 44.0 22.0 250 121-419 295-559 (579)
158 PLN03088 SGT1, suppressor of 96.6 0.059 1.3E-06 49.8 13.3 85 88-174 14-98 (356)
159 COG4783 Putative Zn-dependent 96.5 0.71 1.5E-05 43.1 23.0 136 123-321 318-454 (484)
160 PF14559 TPR_19: Tetratricopep 96.5 0.0094 2E-07 39.9 5.6 48 90-138 5-52 (68)
161 KOG1174 Anaphase-promoting com 96.5 0.69 1.5E-05 42.3 28.0 157 254-422 365-524 (564)
162 PLN03088 SGT1, suppressor of 96.5 0.084 1.8E-06 48.8 13.5 101 49-153 10-110 (356)
163 CHL00033 ycf3 photosystem I as 96.4 0.1 2.2E-06 42.4 12.5 97 40-137 34-139 (168)
164 PF03704 BTAD: Bacterial trans 96.4 0.025 5.3E-07 44.8 8.6 73 112-185 63-140 (146)
165 KOG2053 Mitochondrial inherita 96.4 1.3 2.8E-05 44.5 23.1 101 88-194 21-123 (932)
166 KOG3060 Uncharacterized conser 96.3 0.57 1.2E-05 39.9 22.2 80 254-335 151-234 (289)
167 PF14559 TPR_19: Tetratricopep 96.3 0.017 3.6E-07 38.7 6.0 64 52-118 2-65 (68)
168 PF13170 DUF4003: Protein of u 96.3 0.32 6.9E-06 43.4 15.5 158 163-359 79-250 (297)
169 KOG0548 Molecular co-chaperone 96.3 1.1 2.3E-05 42.4 22.0 360 50-423 11-413 (539)
170 PRK10866 outer membrane biogen 96.2 0.73 1.6E-05 40.0 20.7 53 121-175 42-98 (243)
171 PRK15363 pathogenicity island 96.2 0.14 3E-06 40.4 11.2 89 85-175 44-132 (157)
172 PRK10153 DNA-binding transcrip 96.2 0.53 1.2E-05 45.8 17.6 138 34-175 330-482 (517)
173 PF03704 BTAD: Bacterial trans 96.1 0.034 7.3E-07 44.0 7.9 109 40-149 2-139 (146)
174 PRK15363 pathogenicity island 96.1 0.35 7.6E-06 38.2 13.0 91 118-212 42-132 (157)
175 KOG2796 Uncharacterized conser 96.1 0.11 2.4E-06 44.1 10.8 147 40-189 176-327 (366)
176 PF04840 Vps16_C: Vps16, C-ter 96.0 1.1 2.4E-05 40.5 19.6 58 254-317 205-262 (319)
177 PF13432 TPR_16: Tetratricopep 95.9 0.059 1.3E-06 35.6 7.0 55 119-174 5-59 (65)
178 PF12688 TPR_5: Tetratrico pep 95.8 0.43 9.4E-06 36.0 12.2 52 88-139 13-66 (120)
179 KOG2796 Uncharacterized conser 95.6 0.6 1.3E-05 39.9 13.2 29 41-69 69-97 (366)
180 PF12688 TPR_5: Tetratrico pep 95.6 0.7 1.5E-05 34.9 13.3 105 48-158 8-118 (120)
181 PF14938 SNAP: Soluble NSF att 95.5 0.27 5.8E-06 43.9 12.0 165 44-211 78-265 (282)
182 PF13432 TPR_16: Tetratricopep 95.5 0.074 1.6E-06 35.1 6.5 52 86-138 7-58 (65)
183 PRK10803 tol-pal system protei 95.5 0.29 6.2E-06 42.9 11.6 96 78-175 145-246 (263)
184 PF13414 TPR_11: TPR repeat; P 95.5 0.094 2E-06 35.1 6.9 63 111-174 3-66 (69)
185 smart00299 CLH Clathrin heavy 95.5 0.94 2E-05 35.4 15.0 128 43-193 9-137 (140)
186 PF14938 SNAP: Soluble NSF att 95.4 1.1 2.5E-05 39.9 15.6 24 149-172 38-61 (282)
187 PF07035 Mic1: Colon cancer-as 95.3 1.2 2.6E-05 35.7 14.7 136 131-321 14-149 (167)
188 KOG4162 Predicted calmodulin-b 95.2 3.7 8E-05 40.8 31.1 72 33-105 315-386 (799)
189 PRK10153 DNA-binding transcrip 95.1 3.7 8E-05 40.1 18.9 149 141-330 332-489 (517)
190 PF09205 DUF1955: Domain of un 95.0 1.1 2.4E-05 34.0 12.6 68 256-324 85-152 (161)
191 KOG4162 Predicted calmodulin-b 94.9 4.5 9.7E-05 40.3 25.2 217 99-358 311-541 (799)
192 PRK10803 tol-pal system protei 94.9 0.56 1.2E-05 41.1 11.7 103 41-147 143-251 (263)
193 PF13414 TPR_11: TPR repeat; P 94.8 0.16 3.5E-06 33.9 6.6 62 76-138 3-65 (69)
194 PF13371 TPR_9: Tetratricopept 94.8 0.25 5.4E-06 33.4 7.6 56 119-175 3-58 (73)
195 PF13424 TPR_12: Tetratricopep 94.8 0.12 2.6E-06 35.6 6.0 62 112-173 6-73 (78)
196 COG5107 RNA14 Pre-mRNA 3'-end 94.8 1.7 3.7E-05 40.3 14.4 145 41-191 397-545 (660)
197 COG4235 Cytochrome c biogenesi 94.7 1.3 2.8E-05 38.9 13.0 101 74-176 154-257 (287)
198 PRK10866 outer membrane biogen 94.6 2.7 5.9E-05 36.5 18.7 77 78-157 35-115 (243)
199 KOG3060 Uncharacterized conser 94.4 3 6.4E-05 35.7 20.7 184 124-360 25-221 (289)
200 KOG0553 TPR repeat-containing 94.3 0.69 1.5E-05 40.4 10.4 101 86-191 91-192 (304)
201 PF13371 TPR_9: Tetratricopept 94.3 0.33 7.2E-06 32.8 7.2 54 85-139 4-57 (73)
202 KOG1127 TPR repeat-containing 94.1 8.2 0.00018 39.8 18.6 65 254-321 593-659 (1238)
203 COG5107 RNA14 Pre-mRNA 3'-end 94.0 3.5 7.6E-05 38.4 14.7 130 146-320 397-530 (660)
204 PF07035 Mic1: Colon cancer-as 94.0 2.6 5.7E-05 33.8 15.1 134 60-211 13-148 (167)
205 PF04840 Vps16_C: Vps16, C-ter 94.0 4.6 0.0001 36.6 24.6 109 259-393 179-288 (319)
206 PF08631 SPO22: Meiosis protei 93.4 5.5 0.00012 35.4 23.9 156 52-210 4-184 (278)
207 PF13525 YfiO: Outer membrane 93.4 4.3 9.2E-05 34.2 15.4 55 121-175 15-71 (203)
208 smart00299 CLH Clathrin heavy 93.3 3.1 6.7E-05 32.4 13.6 88 79-174 10-97 (140)
209 KOG1538 Uncharacterized conser 93.3 5.2 0.00011 39.0 15.1 269 38-361 553-848 (1081)
210 PF13424 TPR_12: Tetratricopep 93.2 0.25 5.5E-06 33.9 5.2 63 258-320 6-74 (78)
211 PF13929 mRNA_stabil: mRNA sta 93.2 3.1 6.6E-05 36.5 12.5 115 56-170 143-262 (292)
212 KOG0553 TPR repeat-containing 93.0 1.2 2.7E-05 38.9 9.8 100 50-155 90-191 (304)
213 PF10300 DUF3808: Protein of u 92.9 2.3 5E-05 41.0 12.8 128 258-394 230-374 (468)
214 PLN03098 LPA1 LOW PSII ACCUMUL 92.9 1.3 2.8E-05 41.4 10.4 62 76-139 75-140 (453)
215 COG4235 Cytochrome c biogenesi 92.8 1.6 3.6E-05 38.2 10.3 99 291-396 155-256 (287)
216 PF10602 RPN7: 26S proteasome 92.7 1.6 3.6E-05 35.7 9.9 63 112-174 37-101 (177)
217 COG3629 DnrI DNA-binding trans 92.5 2.1 4.6E-05 37.6 10.7 79 112-191 154-237 (280)
218 COG4700 Uncharacterized protei 92.5 5.1 0.00011 32.6 14.6 105 72-176 85-190 (251)
219 PLN03098 LPA1 LOW PSII ACCUMUL 92.4 2.4 5.1E-05 39.8 11.5 63 110-174 74-140 (453)
220 PF09205 DUF1955: Domain of un 92.4 3.8 8.3E-05 31.2 12.0 68 110-178 85-152 (161)
221 PF13281 DUF4071: Domain of un 92.4 9.1 0.0002 35.4 24.1 32 290-321 303-334 (374)
222 KOG4570 Uncharacterized conser 92.2 3.5 7.5E-05 36.5 11.4 104 70-175 58-164 (418)
223 PF13762 MNE1: Mitochondrial s 92.2 3 6.5E-05 32.5 10.1 99 65-163 26-132 (145)
224 PRK15331 chaperone protein Sic 92.1 1.4 3.1E-05 35.0 8.4 88 86-175 47-134 (165)
225 COG4105 ComL DNA uptake lipopr 92.0 4.5 9.7E-05 34.8 11.8 167 257-428 35-230 (254)
226 KOG1127 TPR repeat-containing 92.0 15 0.00033 38.1 16.9 130 78-211 494-624 (1238)
227 PF04053 Coatomer_WDAD: Coatom 92.0 3.6 7.7E-05 39.2 12.5 131 49-210 269-400 (443)
228 KOG0624 dsRNA-activated protei 91.9 9.1 0.0002 34.4 25.1 238 49-321 114-370 (504)
229 COG3629 DnrI DNA-binding trans 91.9 2.3 5.1E-05 37.3 10.3 77 78-155 155-236 (280)
230 PF07079 DUF1347: Protein of u 91.9 11 0.00024 35.3 25.8 374 44-428 49-521 (549)
231 PF10300 DUF3808: Protein of u 91.7 13 0.00029 35.9 16.7 167 149-357 191-374 (468)
232 KOG1538 Uncharacterized conser 91.7 14 0.00031 36.2 18.6 221 41-321 598-846 (1081)
233 KOG0624 dsRNA-activated protei 91.4 10 0.00023 34.1 26.0 143 46-196 43-204 (504)
234 KOG4570 Uncharacterized conser 91.3 1.6 3.5E-05 38.4 8.6 103 34-140 57-164 (418)
235 COG1729 Uncharacterized protei 90.8 3.9 8.5E-05 35.4 10.4 95 78-175 144-244 (262)
236 PF13525 YfiO: Outer membrane 90.3 9.9 0.00021 31.9 14.4 55 86-140 15-71 (203)
237 PF02259 FAT: FAT domain; Int 90.2 15 0.00032 33.8 15.2 68 254-321 143-213 (352)
238 cd00923 Cyt_c_Oxidase_Va Cytoc 90.2 5.2 0.00011 28.5 8.9 63 272-335 22-84 (103)
239 PF02284 COX5A: Cytochrome c o 90.0 5.4 0.00012 28.8 8.7 62 273-335 26-87 (108)
240 PF10602 RPN7: 26S proteasome 89.8 5.4 0.00012 32.7 10.2 97 78-174 38-141 (177)
241 PF04053 Coatomer_WDAD: Coatom 89.7 13 0.00027 35.6 13.9 109 41-176 295-403 (443)
242 COG3898 Uncharacterized membra 89.4 17 0.00038 33.4 24.0 268 38-364 115-397 (531)
243 KOG2041 WD40 repeat protein [G 88.6 28 0.0006 34.7 21.0 87 38-135 689-784 (1189)
244 PF13176 TPR_7: Tetratricopept 88.5 1.2 2.5E-05 25.2 3.9 23 114-136 2-24 (36)
245 PF00637 Clathrin: Region in C 88.4 0.24 5.2E-06 38.9 1.4 84 82-172 13-96 (143)
246 PF13762 MNE1: Mitochondrial s 88.2 11 0.00023 29.5 12.0 94 101-194 27-128 (145)
247 cd00923 Cyt_c_Oxidase_Va Cytoc 88.0 4.1 8.8E-05 29.1 6.9 43 96-138 27-69 (103)
248 KOG0543 FKBP-type peptidyl-pro 87.2 8.6 0.00019 35.4 10.4 125 85-212 217-355 (397)
249 PF13512 TPR_18: Tetratricopep 87.1 8.4 0.00018 30.0 9.0 71 88-158 22-94 (142)
250 PF08631 SPO22: Meiosis protei 87.1 21 0.00046 31.7 23.6 134 257-392 121-271 (278)
251 PF13176 TPR_7: Tetratricopept 86.7 1.7 3.6E-05 24.6 3.8 26 294-319 1-26 (36)
252 PF04097 Nic96: Nup93/Nic96; 86.4 39 0.00085 34.1 17.5 77 40-117 110-196 (613)
253 PF13512 TPR_18: Tetratricopep 85.7 5.7 0.00012 30.9 7.4 81 256-337 10-92 (142)
254 PF11848 DUF3368: Domain of un 85.6 3 6.6E-05 25.5 4.8 39 369-410 7-45 (48)
255 PF09613 HrpB1_HrpK: Bacterial 85.2 17 0.00038 28.9 11.8 54 85-140 19-73 (160)
256 PF02284 COX5A: Cytochrome c o 84.8 13 0.00028 27.0 9.3 42 62-103 31-72 (108)
257 PF13929 mRNA_stabil: mRNA sta 84.7 28 0.0006 30.8 18.3 63 254-316 199-262 (292)
258 KOG4555 TPR repeat-containing 84.2 15 0.00033 28.0 8.7 91 266-360 52-145 (175)
259 PRK15331 chaperone protein Sic 83.8 11 0.00024 30.1 8.4 92 46-139 42-133 (165)
260 KOG0548 Molecular co-chaperone 83.6 43 0.00094 32.2 21.0 235 79-376 227-470 (539)
261 KOG2114 Vacuolar assembly/sort 83.5 56 0.0012 33.4 15.3 154 40-207 282-455 (933)
262 PF13428 TPR_14: Tetratricopep 82.9 5.4 0.00012 23.6 5.1 27 295-321 4-30 (44)
263 PF13428 TPR_14: Tetratricopep 82.8 4.9 0.00011 23.8 4.9 24 116-139 6-29 (44)
264 COG1729 Uncharacterized protei 82.1 10 0.00022 32.9 8.2 94 259-359 144-244 (262)
265 PF13374 TPR_10: Tetratricopep 81.9 3.8 8.3E-05 23.5 4.3 25 113-137 4-28 (42)
266 PF04184 ST7: ST7 protein; In 81.7 27 0.00059 33.3 11.3 75 116-190 264-340 (539)
267 PF13374 TPR_10: Tetratricopep 80.8 4.2 9.2E-05 23.4 4.2 29 292-320 2-30 (42)
268 PF00637 Clathrin: Region in C 80.5 0.7 1.5E-05 36.3 0.7 86 46-138 12-97 (143)
269 PF02259 FAT: FAT domain; Int 80.5 47 0.001 30.5 14.2 53 118-174 5-57 (352)
270 KOG2280 Vacuolar assembly/sort 80.5 69 0.0015 32.4 17.6 226 39-318 505-770 (829)
271 PF11207 DUF2989: Protein of u 80.0 7 0.00015 32.4 6.2 80 342-424 118-200 (203)
272 PHA02875 ankyrin repeat protei 79.9 11 0.00023 35.8 8.7 78 50-135 8-89 (413)
273 TIGR02561 HrpB1_HrpK type III 79.8 28 0.0006 27.4 9.8 51 268-322 21-74 (153)
274 PF07079 DUF1347: Protein of u 79.7 56 0.0012 30.9 17.6 169 256-429 127-325 (549)
275 TIGR02561 HrpB1_HrpK type III 79.6 28 0.00061 27.4 10.9 51 88-140 22-73 (153)
276 KOG0543 FKBP-type peptidyl-pro 79.6 52 0.0011 30.5 12.8 122 50-174 217-354 (397)
277 COG4649 Uncharacterized protei 79.5 32 0.00069 27.9 11.5 138 258-401 60-201 (221)
278 PF11838 ERAP1_C: ERAP1-like C 79.1 50 0.0011 30.0 21.7 147 162-355 146-304 (324)
279 TIGR02508 type_III_yscG type I 78.1 20 0.00043 25.9 7.1 78 272-360 20-98 (115)
280 COG5108 RPO41 Mitochondrial DN 78.0 38 0.00082 33.6 11.1 46 46-91 33-80 (1117)
281 PF04184 ST7: ST7 protein; In 76.9 59 0.0013 31.2 11.9 79 82-160 265-345 (539)
282 KOG0687 26S proteasome regulat 76.7 57 0.0012 29.4 12.2 132 254-394 67-208 (393)
283 PF11848 DUF3368: Domain of un 75.5 13 0.00028 22.7 5.1 32 157-188 13-44 (48)
284 PF04097 Nic96: Nup93/Nic96; 75.1 79 0.0017 31.9 13.3 117 274-398 241-358 (613)
285 COG3118 Thioredoxin domain-con 74.9 61 0.0013 28.8 15.4 145 49-197 142-288 (304)
286 KOG2610 Uncharacterized conser 74.8 66 0.0014 29.2 11.7 114 53-169 115-232 (491)
287 PF13281 DUF4071: Domain of un 74.8 73 0.0016 29.6 20.8 174 75-286 140-334 (374)
288 PF11207 DUF2989: Protein of u 74.8 35 0.00076 28.4 8.9 76 120-197 116-194 (203)
289 COG4455 ImpE Protein of avirul 74.6 24 0.00052 29.8 7.8 57 45-102 5-61 (273)
290 KOG4077 Cytochrome c oxidase, 74.2 29 0.00063 26.3 7.4 61 274-335 66-126 (149)
291 KOG2114 Vacuolar assembly/sort 73.1 91 0.002 32.1 12.6 116 46-173 339-458 (933)
292 PF00515 TPR_1: Tetratricopept 72.7 11 0.00025 20.4 4.2 28 147-174 2-29 (34)
293 TIGR03504 FimV_Cterm FimV C-te 71.2 9.8 0.00021 22.7 3.7 24 298-321 5-28 (44)
294 PF00515 TPR_1: Tetratricopept 70.3 14 0.00031 20.0 4.2 28 112-139 2-29 (34)
295 PF13431 TPR_17: Tetratricopep 69.7 6.7 0.00014 21.8 2.7 21 110-130 12-32 (34)
296 KOG0276 Vesicle coat complex C 67.7 56 0.0012 32.1 9.6 112 52-197 597-708 (794)
297 KOG4555 TPR repeat-containing 67.7 54 0.0012 25.2 11.2 54 50-104 52-105 (175)
298 PF11846 DUF3366: Domain of un 67.1 28 0.0006 28.9 7.1 60 262-321 113-173 (193)
299 TIGR03504 FimV_Cterm FimV C-te 66.9 14 0.0003 22.1 3.7 23 153-175 6-28 (44)
300 KOG4077 Cytochrome c oxidase, 65.7 47 0.001 25.2 7.0 45 131-175 69-113 (149)
301 PHA02875 ankyrin repeat protei 65.4 1.2E+02 0.0025 28.8 11.9 132 32-179 21-161 (413)
302 COG4455 ImpE Protein of avirul 65.3 86 0.0019 26.6 13.6 77 259-336 3-81 (273)
303 PRK10564 maltose regulon perip 65.1 16 0.00035 32.4 5.3 41 73-113 253-294 (303)
304 COG2178 Predicted RNA-binding 65.1 79 0.0017 26.2 9.1 93 298-394 35-148 (204)
305 PF07721 TPR_4: Tetratricopept 64.4 12 0.00026 19.1 2.9 20 297-316 6-25 (26)
306 COG5187 RPN7 26S proteasome re 64.4 1E+02 0.0023 27.3 12.5 132 254-394 78-219 (412)
307 COG3947 Response regulator con 63.3 56 0.0012 29.0 8.1 59 113-172 281-339 (361)
308 COG0735 Fur Fe2+/Zn2+ uptake r 62.6 66 0.0014 25.3 8.0 64 132-196 7-70 (145)
309 COG4700 Uncharacterized protei 62.1 90 0.002 25.8 17.6 130 37-170 85-217 (251)
310 smart00638 LPD_N Lipoprotein N 62.0 1.8E+02 0.0039 29.2 22.7 115 75-195 309-432 (574)
311 COG4105 ComL DNA uptake lipopr 61.9 1.1E+02 0.0023 26.7 19.3 64 111-175 35-100 (254)
312 PRK11906 transcriptional regul 61.8 1.5E+02 0.0033 28.3 17.5 160 42-207 252-431 (458)
313 PRK09687 putative lyase; Provi 61.4 1.2E+02 0.0026 27.0 25.1 17 110-126 67-83 (280)
314 PF09613 HrpB1_HrpK: Bacterial 61.1 84 0.0018 25.1 13.9 87 49-141 18-107 (160)
315 PF07719 TPR_2: Tetratricopept 61.1 24 0.00052 18.9 4.2 27 148-174 3-29 (34)
316 PF11846 DUF3366: Domain of un 60.5 47 0.001 27.5 7.3 54 122-175 119-173 (193)
317 PF11663 Toxin_YhaV: Toxin wit 60.1 12 0.00027 28.6 3.3 30 89-120 108-137 (140)
318 cd00280 TRFH Telomeric Repeat 59.8 97 0.0021 25.4 9.7 65 127-194 85-156 (200)
319 PRK10564 maltose regulon perip 59.3 25 0.00054 31.2 5.5 37 142-178 252-289 (303)
320 KOG4567 GTPase-activating prot 59.1 61 0.0013 28.9 7.6 70 96-170 263-342 (370)
321 PF10366 Vps39_1: Vacuolar sor 58.7 72 0.0016 23.6 8.0 27 148-174 41-67 (108)
322 COG3947 Response regulator con 58.5 89 0.0019 27.8 8.4 62 147-211 280-341 (361)
323 TIGR02508 type_III_yscG type I 58.3 69 0.0015 23.3 7.5 79 56-141 20-98 (115)
324 COG1747 Uncharacterized N-term 58.3 1.9E+02 0.004 28.2 22.3 49 273-321 185-234 (711)
325 KOG0276 Vesicle coat complex C 58.2 1.5E+02 0.0033 29.3 10.6 108 42-176 615-722 (794)
326 PF13181 TPR_8: Tetratricopept 57.5 29 0.00063 18.6 4.1 27 148-174 3-29 (34)
327 PF10579 Rapsyn_N: Rapsyn N-te 56.9 43 0.00094 23.0 5.1 47 269-315 18-66 (80)
328 PF11663 Toxin_YhaV: Toxin wit 56.7 13 0.00028 28.5 2.9 31 124-156 108-138 (140)
329 COG0735 Fur Fe2+/Zn2+ uptake r 56.0 56 0.0012 25.7 6.6 65 351-418 7-71 (145)
330 KOG0550 Molecular chaperone (D 55.9 1.8E+02 0.0039 27.4 15.9 104 303-414 260-369 (486)
331 PF02847 MA3: MA3 domain; Int 55.9 66 0.0014 23.7 6.8 61 45-107 6-68 (113)
332 COG3118 Thioredoxin domain-con 55.0 1.6E+02 0.0034 26.4 15.4 54 121-175 144-197 (304)
333 PF13174 TPR_6: Tetratricopept 54.7 22 0.00047 18.8 3.1 24 152-175 6-29 (33)
334 KOG1550 Extracellular protein 54.2 2.4E+02 0.0051 28.2 17.6 116 92-212 228-357 (552)
335 cd00245 Glm_e Coenzyme B12-dep 53.8 35 0.00075 32.3 5.8 143 271-421 25-202 (428)
336 TIGR01503 MthylAspMut_E methyl 53.3 1.1E+02 0.0024 29.1 8.8 128 271-406 68-215 (480)
337 COG5108 RPO41 Mitochondrial DN 52.9 2.6E+02 0.0056 28.2 12.7 129 262-403 33-171 (1117)
338 KOG1585 Protein required for f 51.6 1.6E+02 0.0035 25.5 16.5 86 42-137 32-117 (308)
339 cd00280 TRFH Telomeric Repeat 51.3 1.2E+02 0.0027 24.9 7.7 67 92-161 85-158 (200)
340 PF07163 Pex26: Pex26 protein; 51.3 1.8E+02 0.0038 25.9 9.3 72 262-335 88-161 (309)
341 PF06552 TOM20_plant: Plant sp 50.7 1.4E+02 0.003 24.5 8.9 28 143-176 110-137 (186)
342 KOG0991 Replication factor C, 50.6 1.7E+02 0.0036 25.3 10.7 106 263-375 165-282 (333)
343 KOG1464 COP9 signalosome, subu 50.3 1.8E+02 0.0039 25.6 17.8 90 106-195 21-119 (440)
344 PF11838 ERAP1_C: ERAP1-like C 49.9 2E+02 0.0043 26.0 15.8 82 92-176 146-231 (324)
345 PF07163 Pex26: Pex26 protein; 49.2 1.9E+02 0.0042 25.6 9.5 137 24-169 38-181 (309)
346 PF12926 MOZART2: Mitotic-spin 48.8 92 0.002 21.9 7.8 42 97-138 29-70 (88)
347 PF09454 Vps23_core: Vps23 cor 48.7 44 0.00096 22.0 4.1 49 109-158 6-54 (65)
348 KOG2610 Uncharacterized conser 48.6 2.2E+02 0.0047 26.1 18.2 115 88-206 115-232 (491)
349 COG4649 Uncharacterized protei 48.5 1.5E+02 0.0033 24.2 15.1 142 38-180 56-201 (221)
350 PF10579 Rapsyn_N: Rapsyn N-te 48.4 71 0.0015 22.0 5.1 45 123-167 18-64 (80)
351 COG1747 Uncharacterized N-term 47.7 2.8E+02 0.006 27.1 15.5 146 256-412 98-249 (711)
352 PRK11639 zinc uptake transcrip 46.2 1.6E+02 0.0034 23.9 8.1 58 137-195 17-74 (169)
353 PRK11639 zinc uptake transcrip 45.8 1.4E+02 0.0029 24.3 7.5 61 102-163 17-77 (169)
354 PF12796 Ank_2: Ankyrin repeat 45.7 87 0.0019 21.6 5.8 12 168-179 74-85 (89)
355 PF14689 SPOB_a: Sensor_kinase 45.6 33 0.00072 22.2 3.2 46 127-174 6-51 (62)
356 PF12926 MOZART2: Mitotic-spin 45.5 1.1E+02 0.0023 21.6 7.9 42 132-173 29-70 (88)
357 KOG2908 26S proteasome regulat 45.3 1.4E+02 0.0031 27.2 7.8 67 263-329 81-157 (380)
358 PF14689 SPOB_a: Sensor_kinase 45.1 35 0.00076 22.2 3.2 46 92-139 6-51 (62)
359 COG2909 MalT ATP-dependent tra 45.0 3.9E+02 0.0085 28.0 18.9 240 48-321 367-647 (894)
360 PRK14135 recX recombination re 45.0 2.2E+02 0.0047 25.0 11.0 27 260-288 60-86 (263)
361 KOG1130 Predicted G-alpha GTPa 44.9 2.5E+02 0.0055 26.5 9.5 130 259-394 197-342 (639)
362 PRK09687 putative lyase; Provi 44.4 2.3E+02 0.005 25.2 28.4 240 31-335 27-275 (280)
363 PRK09462 fur ferric uptake reg 43.9 1.1E+02 0.0025 23.9 6.7 61 355-418 7-68 (148)
364 PF09477 Type_III_YscG: Bacter 43.9 1.3E+02 0.0028 22.2 8.2 78 272-360 21-99 (116)
365 PF10345 Cohesin_load: Cohesin 43.8 3.6E+02 0.0078 27.3 29.0 181 29-210 43-252 (608)
366 PF07575 Nucleopor_Nup85: Nup8 43.1 1.6E+02 0.0034 29.5 9.0 130 258-411 406-539 (566)
367 KOG2908 26S proteasome regulat 42.8 1.5E+02 0.0033 27.0 7.6 80 114-193 78-168 (380)
368 COG5210 GTPase-activating prot 41.9 2.6E+02 0.0056 27.4 10.1 61 275-335 360-420 (496)
369 PRK09857 putative transposase; 41.6 2.3E+02 0.005 25.5 8.9 66 114-180 209-274 (292)
370 KOG2280 Vacuolar assembly/sort 41.4 4.1E+02 0.0089 27.3 22.6 322 33-394 424-771 (829)
371 KOG2659 LisH motif-containing 41.3 2E+02 0.0044 24.6 7.8 100 254-355 23-128 (228)
372 PRK15180 Vi polysaccharide bio 40.7 3.5E+02 0.0075 26.2 13.6 120 51-174 299-419 (831)
373 PRK11906 transcriptional regul 39.7 3.5E+02 0.0077 26.0 15.4 96 254-355 335-432 (458)
374 PF03745 DUF309: Domain of unk 39.6 1.1E+02 0.0023 19.9 5.4 49 267-315 9-62 (62)
375 PRK14956 DNA polymerase III su 39.6 3.7E+02 0.008 26.2 11.5 91 68-182 194-284 (484)
376 smart00028 TPR Tetratricopepti 39.4 49 0.0011 16.4 3.0 27 148-174 3-29 (34)
377 KOG0686 COP9 signalosome, subu 39.0 3.4E+02 0.0074 25.6 13.1 65 111-175 150-216 (466)
378 cd08819 CARD_MDA5_2 Caspase ac 38.9 1.4E+02 0.003 21.1 6.8 15 124-138 49-63 (88)
379 PF02847 MA3: MA3 domain; Int 38.4 1.6E+02 0.0034 21.6 7.1 61 296-361 6-68 (113)
380 PF09670 Cas_Cas02710: CRISPR- 38.2 3.5E+02 0.0075 25.5 11.6 57 48-105 138-198 (379)
381 COG0457 NrfG FOG: TPR repeat [ 38.1 2.2E+02 0.0048 23.2 23.4 224 54-321 36-265 (291)
382 KOG0687 26S proteasome regulat 37.4 3.2E+02 0.007 24.9 14.8 83 107-191 66-153 (393)
383 cd07153 Fur_like Ferric uptake 36.4 1.2E+02 0.0027 22.4 5.7 45 152-196 6-50 (116)
384 PF07575 Nucleopor_Nup85: Nup8 36.0 99 0.0022 30.9 6.4 95 40-138 371-465 (566)
385 PRK08691 DNA polymerase III su 35.7 5.1E+02 0.011 26.7 11.4 75 68-145 192-279 (709)
386 KOG0550 Molecular chaperone (D 35.4 3.9E+02 0.0085 25.3 12.3 121 49-174 177-315 (486)
387 COG5159 RPN6 26S proteasome re 35.4 3.3E+02 0.0071 24.4 10.6 142 263-408 9-170 (421)
388 KOG0991 Replication factor C, 35.2 3E+02 0.0065 23.9 8.8 101 302-412 169-282 (333)
389 PF09454 Vps23_core: Vps23 cor 34.9 89 0.0019 20.6 3.9 50 38-88 5-54 (65)
390 PF11817 Foie-gras_1: Foie gra 34.7 2.4E+02 0.0052 24.5 7.9 56 117-172 184-244 (247)
391 PRK09857 putative transposase; 34.7 3.4E+02 0.0074 24.4 9.2 66 79-145 209-274 (292)
392 KOG0989 Replication factor C, 34.6 3E+02 0.0066 24.9 8.1 62 272-335 190-251 (346)
393 PRK15180 Vi polysaccharide bio 34.2 4.4E+02 0.0096 25.5 9.6 87 269-362 301-389 (831)
394 PF06368 Met_asp_mut_E: Methyl 34.1 39 0.00084 31.7 2.9 129 271-407 29-177 (441)
395 PRK14956 DNA polymerase III su 34.0 4.6E+02 0.0099 25.6 12.0 77 94-175 184-261 (484)
396 cd07153 Fur_like Ferric uptake 33.9 1.1E+02 0.0023 22.7 4.9 40 379-418 12-51 (116)
397 PF08870 DUF1832: Domain of un 33.7 1.7E+02 0.0038 21.8 5.8 28 59-86 7-36 (113)
398 PHA03100 ankyrin repeat protei 33.3 3E+02 0.0065 26.6 9.3 137 46-196 37-188 (480)
399 TIGR01716 RGG_Cterm transcript 33.1 3E+02 0.0064 23.2 14.4 37 298-335 134-170 (220)
400 TIGR03581 EF_0839 conserved hy 33.1 1.2E+02 0.0026 25.6 5.2 82 57-138 137-235 (236)
401 PF01475 FUR: Ferric uptake re 32.8 1.3E+02 0.0027 22.6 5.2 48 149-196 10-57 (120)
402 KOG1920 IkappaB kinase complex 32.4 7.1E+02 0.015 27.3 16.1 135 50-197 860-1015(1265)
403 COG2405 Predicted nucleic acid 32.3 1.2E+02 0.0026 23.5 4.7 39 152-190 115-153 (157)
404 KOG1920 IkappaB kinase complex 32.2 7.1E+02 0.015 27.3 18.2 50 262-319 1004-1053(1265)
405 KOG4648 Uncharacterized conser 32.1 1.6E+02 0.0034 27.0 6.1 79 86-174 107-186 (536)
406 PF10963 DUF2765: Protein of u 32.0 62 0.0013 22.5 2.9 32 36-67 11-42 (83)
407 PF11864 DUF3384: Domain of un 31.9 4.9E+02 0.011 25.3 19.0 87 273-360 151-246 (464)
408 COG2976 Uncharacterized protei 31.3 3.1E+02 0.0068 22.9 13.4 87 85-176 98-189 (207)
409 PF08461 HTH_12: Ribonuclease 31.2 1.3E+02 0.0029 19.8 4.3 40 379-418 9-48 (66)
410 PRK07764 DNA polymerase III su 31.1 5.4E+02 0.012 27.3 10.7 32 70-103 195-226 (824)
411 KOG3364 Membrane protein invol 31.0 1.7E+02 0.0037 22.8 5.3 67 74-140 30-100 (149)
412 PF10475 DUF2450: Protein of u 30.7 4E+02 0.0086 23.9 9.5 105 81-196 103-212 (291)
413 PF09868 DUF2095: Uncharacteri 30.6 1.8E+02 0.0038 21.7 5.1 24 83-106 68-91 (128)
414 PRK14958 DNA polymerase III su 30.4 5.4E+02 0.012 25.4 12.5 35 145-180 245-279 (509)
415 PF04090 RNA_pol_I_TF: RNA pol 30.4 3.2E+02 0.0069 22.9 7.3 64 41-104 41-104 (199)
416 COG4003 Uncharacterized protei 30.4 1.6E+02 0.0035 20.3 4.5 25 82-106 37-61 (98)
417 PF01475 FUR: Ferric uptake re 30.0 96 0.0021 23.2 4.1 40 379-418 19-58 (120)
418 COG2812 DnaX DNA polymerase II 29.7 3.9E+02 0.0085 26.3 8.9 26 379-404 257-282 (515)
419 PF09670 Cas_Cas02710: CRISPR- 29.7 4.8E+02 0.01 24.5 11.0 57 264-321 138-198 (379)
420 PF14669 Asp_Glu_race_2: Putat 29.6 3.3E+02 0.0072 22.7 14.2 56 261-316 136-205 (233)
421 COG2405 Predicted nucleic acid 29.4 1.3E+02 0.0028 23.4 4.4 44 366-412 111-154 (157)
422 PRK09462 fur ferric uptake reg 28.7 2.9E+02 0.0062 21.7 8.1 37 126-162 32-68 (148)
423 PF12862 Apc5: Anaphase-promot 28.7 2.2E+02 0.0047 20.2 6.7 53 122-174 9-69 (94)
424 COG2137 OraA Uncharacterized p 28.6 3.3E+02 0.0071 22.3 14.1 129 59-210 36-165 (174)
425 COG2976 Uncharacterized protei 28.4 3.6E+02 0.0077 22.6 9.3 88 49-141 97-189 (207)
426 PF02184 HAT: HAT (Half-A-TPR) 28.0 1.1E+02 0.0025 16.8 3.2 25 382-408 2-26 (32)
427 PF11123 DNA_Packaging_2: DNA 27.8 1.9E+02 0.0041 19.6 4.4 33 91-124 12-44 (82)
428 PRK07003 DNA polymerase III su 27.6 4.5E+02 0.0097 27.5 9.0 47 273-321 180-227 (830)
429 cd08819 CARD_MDA5_2 Caspase ac 27.2 2.3E+02 0.005 20.0 7.5 65 60-130 21-85 (88)
430 smart00386 HAT HAT (Half-A-TPR 27.0 1E+02 0.0022 15.8 3.6 28 381-409 1-28 (33)
431 KOG2297 Predicted translation 26.7 4.8E+02 0.01 23.6 15.4 118 253-386 219-340 (412)
432 PHA02743 Viral ankyrin protein 26.6 3.1E+02 0.0066 21.9 6.8 79 51-131 27-111 (166)
433 PHA02989 ankyrin repeat protei 26.2 6.2E+02 0.013 24.7 11.5 14 96-109 88-101 (494)
434 COG0457 NrfG FOG: TPR repeat [ 26.0 3.6E+02 0.0077 21.8 27.1 227 89-360 36-266 (291)
435 TIGR03184 DNA_S_dndE DNA sulfu 26.0 2.6E+02 0.0057 20.6 5.5 20 59-78 6-27 (105)
436 PF13934 ELYS: Nuclear pore co 25.8 4.3E+02 0.0092 22.7 10.5 109 70-192 73-183 (226)
437 PRK14958 DNA polymerase III su 25.7 6.6E+02 0.014 24.8 11.9 8 328-335 383-390 (509)
438 cd08790 DED_DEDD Death Effecto 25.4 1.1E+02 0.0024 21.9 3.3 57 88-146 36-92 (97)
439 KOG2659 LisH motif-containing 25.3 4.4E+02 0.0095 22.6 8.6 65 37-103 22-91 (228)
440 PF11768 DUF3312: Protein of u 25.1 6.8E+02 0.015 24.8 10.6 62 114-175 411-473 (545)
441 KOG4648 Uncharacterized conser 25.1 2.1E+02 0.0046 26.1 5.7 46 266-313 106-152 (536)
442 PF10366 Vps39_1: Vacuolar sor 24.9 2.9E+02 0.0062 20.4 7.7 27 113-139 41-67 (108)
443 KOG4567 GTPase-activating prot 24.7 3.2E+02 0.007 24.7 6.6 58 131-193 263-320 (370)
444 KOG1585 Protein required for f 24.6 4.8E+02 0.01 22.9 16.2 213 72-352 23-249 (308)
445 PRK14951 DNA polymerase III su 24.5 7.6E+02 0.016 25.1 11.0 82 96-180 189-284 (618)
446 PRK11619 lytic murein transgly 24.5 7.8E+02 0.017 25.2 20.6 262 45-356 103-372 (644)
447 KOG0989 Replication factor C, 24.5 5.4E+02 0.012 23.4 9.6 24 156-179 265-288 (346)
448 KOG3636 Uncharacterized conser 24.4 6.3E+02 0.014 24.2 12.2 93 282-376 173-271 (669)
449 COG2178 Predicted RNA-binding 24.3 4.2E+02 0.0092 22.1 9.1 26 149-174 32-57 (204)
450 smart00544 MA3 Domain in DAP-5 24.2 2.9E+02 0.0063 20.2 10.2 60 45-106 6-67 (113)
451 PF02607 B12-binding_2: B12 bi 24.1 1.7E+02 0.0036 19.8 4.2 39 157-195 12-50 (79)
452 COG5210 GTPase-activating prot 24.1 6.9E+02 0.015 24.5 10.7 94 57-151 319-417 (496)
453 KOG2297 Predicted translation 23.7 5.5E+02 0.012 23.3 14.8 127 37-195 107-237 (412)
454 PRK08691 DNA polymerase III su 23.7 8.3E+02 0.018 25.3 11.4 85 93-180 181-279 (709)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 23.7 3.3E+02 0.0072 20.7 9.2 42 94-135 81-123 (126)
456 smart00638 LPD_N Lipoprotein N 23.5 7.6E+02 0.016 24.7 24.3 28 77-104 341-368 (574)
457 PF04124 Dor1: Dor1-like famil 23.3 2E+02 0.0043 26.5 5.6 23 262-284 111-133 (338)
458 TIGR01914 cas_Csa4 CRISPR-asso 23.2 3.6E+02 0.0079 24.6 6.7 75 331-414 278-353 (354)
459 PHA02798 ankyrin-like protein; 23.1 3.7E+02 0.008 26.2 7.8 13 96-108 89-101 (489)
460 PRK14951 DNA polymerase III su 23.0 8.1E+02 0.018 24.9 11.7 76 67-145 196-284 (618)
461 PF10345 Cohesin_load: Cohesin 22.9 8E+02 0.017 24.8 24.7 127 46-173 105-252 (608)
462 PRK14960 DNA polymerase III su 22.8 7E+02 0.015 25.7 9.3 46 274-321 180-226 (702)
463 PHA03100 ankyrin repeat protei 22.3 7.1E+02 0.015 24.0 10.9 134 31-180 53-203 (480)
464 PRK14135 recX recombination re 22.3 5.4E+02 0.012 22.6 18.9 75 93-170 89-163 (263)
465 KOG4234 TPR repeat-containing 22.2 4.9E+02 0.011 22.0 8.1 91 302-396 105-197 (271)
466 PF10475 DUF2450: Protein of u 21.5 5.9E+02 0.013 22.8 10.8 53 116-174 103-155 (291)
467 KOG2041 WD40 repeat protein [G 21.2 9.2E+02 0.02 24.9 17.8 22 153-174 930-951 (1189)
468 PF05944 Phage_term_smal: Phag 21.1 2.6E+02 0.0057 21.6 4.9 31 148-178 50-80 (132)
469 KOG2063 Vacuolar assembly/sort 21.1 1E+03 0.022 25.4 17.4 273 110-433 477-765 (877)
470 COG0819 TenA Putative transcri 20.8 5.3E+02 0.012 22.0 8.0 21 74-94 107-127 (218)
471 PF07443 HARP: HepA-related pr 20.5 40 0.00088 21.3 0.4 30 127-156 8-37 (55)
472 KOG4279 Serine/threonine prote 20.5 9.8E+02 0.021 24.9 10.1 143 45-192 164-334 (1226)
473 PF09986 DUF2225: Uncharacteri 20.4 5.4E+02 0.012 21.8 8.5 51 273-323 141-196 (214)
474 PRK14963 DNA polymerase III su 20.1 8.5E+02 0.018 24.0 11.6 85 93-180 178-275 (504)
475 PF09543 DUF2379: Protein of u 20.0 1.3E+02 0.0028 22.5 2.8 54 348-401 55-108 (121)
476 smart00164 TBC Domain in Tre-2 20.0 2.8E+02 0.0061 22.8 5.6 82 56-141 108-197 (199)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-59 Score=472.24 Aligned_cols=367 Identities=14% Similarity=0.174 Sum_probs=255.3
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC
Q 013323 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD 110 (445)
Q Consensus 31 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 110 (445)
++.+....||..+||.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 427 ~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 427 RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 33444445999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH--cCCCCCHHHHHHHH
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA--AGAGLDKFCYAGLI 188 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li 188 (445)
..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 67899999999999
Q ss_pred HHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHH
Q 013323 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268 (445)
Q Consensus 189 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 268 (445)
.+|++.|+. +.|.++|+.|.+.+..+................ .+.........|...|+ .||..+|+++|.+|+
T Consensus 587 ~ay~k~G~l--deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G---~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 587 KACANAGQV--DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG---DWDFALSIYDDMKKKGV-KPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHCCCH--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Confidence 999999977 899999999988643211111000000000000 01111111122333343 455555555555555
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-H
Q 013323 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-Q 347 (445)
Q Consensus 269 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~ 347 (445)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||. +|++.|. +
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~----gy~k~G~~e 736 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT----ALCEGNQLP 736 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHCCCHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555 4455555 5
Q ss_pred HHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYY 409 (445)
Q Consensus 348 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 409 (445)
+|.++|++|.+.|+.||..||+.+|.+|. +.|++++|.++|++|.+.|+.||..+|++++
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~--k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASE--RKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55555555555555555555555555544 5555555555555555555555555555554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.7e-58 Score=459.74 Aligned_cols=387 Identities=17% Similarity=0.162 Sum_probs=334.4
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 013323 28 GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107 (445)
Q Consensus 28 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 107 (445)
-..+|.+.|+.||..+||++|.+|++.|+++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHH
Q 013323 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK--YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYA 185 (445)
Q Consensus 108 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 185 (445)
.||..+||.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999986 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHH
Q 013323 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265 (445)
Q Consensus 186 ~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~ 265 (445)
++|.+|++.|+. +.|.++|+.|...+..++..+..............+. .......+.+.|+ .||..+|+++|.
T Consensus 619 sLI~ay~k~G~~--deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee---A~~l~~eM~k~G~-~pd~~tynsLI~ 692 (1060)
T PLN03218 619 IAVNSCSQKGDW--DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK---AFEILQDARKQGI-KLGTVSYSSLMG 692 (1060)
T ss_pred HHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCC-CCCHHHHHHHHH
Confidence 999999999987 9999999999987654443222111111111122222 2222334556677 999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhh
Q 013323 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG 345 (445)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g 345 (445)
+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|...|+.||..||++||. +|++.|
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~----a~~k~G 768 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV----ASERKD 768 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred H-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHC--CCCCC----HHHHHHHHhhhhccCCC
Q 013323 346 M-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR--KITPS----LPAVEAYYNGLKDREVP 418 (445)
Q Consensus 346 ~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~~~~ 418 (445)
. +.|.+++++|.+.|+.||..+|+.++.+|. +++++|..+.+.+... +...+ ...-..+++.+.+.|..
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~----~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCL----RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 8 999999999999999999999999997653 3566666665555532 22222 22233567888999999
Q ss_pred CCCCchhhhh
Q 013323 419 ADDPRLVVVS 428 (445)
Q Consensus 419 ~~a~~~l~~~ 428 (445)
|+..++..++
T Consensus 845 Pd~~T~~~vL 854 (1060)
T PLN03218 845 PTMEVLSQVL 854 (1060)
T ss_pred CCHHHHHHHH
Confidence 9998876665
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-54 Score=442.50 Aligned_cols=392 Identities=16% Similarity=0.121 Sum_probs=325.1
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 013323 32 YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV 111 (445)
Q Consensus 32 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 111 (445)
...+...||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.+.+++..|.+.|+.||.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 33444478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 191 (445)
.+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 999999999999999999999999987 4788899999999999999999999999999999999999999999888
Q ss_pred HccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhc----------------------------chhhh
Q 013323 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY----------------------------NLPTA 243 (445)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~ 243 (445)
++.|+. +.+.++++.+.+.+..+..................+... .....
T Consensus 400 ~~~g~~--~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 400 ACLGDL--DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred hccchH--HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 888876 888888888877654332211111000000000000000 00011
Q ss_pred hHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 013323 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323 (445)
Q Consensus 244 ~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 323 (445)
...|. .+ ..||..||+++|.+|++.|+++.+.+++..+.+.|+.+|..++|+||.+|+++|++++|+++|+.+
T Consensus 478 f~~m~-~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----- 550 (857)
T PLN03077 478 FRQML-LT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----- 550 (857)
T ss_pred HHHHH-hC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----
Confidence 11222 23 378888888888888888888888888888888888888888888889999999999999999886
Q ss_pred CCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHH-HCCCCCC
Q 013323 324 FPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ-ARKITPS 401 (445)
Q Consensus 324 ~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~-~~~~~p~ 401 (445)
.||..+|++||. +|+++|. ++|.++|++|.+.|+.||..||+.+|.+|. +.|++++|.++|++|. +.|+.|+
T Consensus 551 ~~d~~s~n~lI~----~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~--~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 551 EKDVVSWNILLT----GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS--RSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred CCChhhHHHHHH----HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh--hcChHHHHHHHHHHHHHHhCCCCc
Confidence 579999999999 7899999 999999999999999999999999999998 9999999999999999 7899999
Q ss_pred HHHHHHHHhhhhccCCCCCCCc----------------hhhhhhccccccccCcccc
Q 013323 402 LPAVEAYYNGLKDREVPADDPR----------------LVVVSRAYDNLLRGRPGAV 442 (445)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~----------------~l~~~~~~~~~~~~~~~~~ 442 (445)
..+|++++++|++.|..++|.. ++++|+.+++...|+.+|.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999999998766653 5677788888888877664
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.8e-54 Score=427.98 Aligned_cols=388 Identities=18% Similarity=0.177 Sum_probs=342.7
Q ss_pred HHHHHhc-CCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 013323 29 AEEYARR-NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107 (445)
Q Consensus 29 ~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 107 (445)
...|... ++.||..+|++++.+|++.++++.+.+++..|.+.|+.||..+|+.++++|++.|+++.|.++|++|.+
T Consensus 110 f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--- 186 (697)
T PLN03081 110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--- 186 (697)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---
Confidence 4556554 478999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 013323 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187 (445)
Q Consensus 108 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 187 (445)
||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|+++
T Consensus 187 -~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 187 -RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred -CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCchHHHHHHHHHHHHhcCCccccccccc-cchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 188 ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN-AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 188 i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
|++|++.|+. +.|.++|+.|...... +.... ......+... ........|...|+ .||..||+++|.+
T Consensus 266 i~~y~k~g~~--~~A~~vf~~m~~~~~v----t~n~li~~y~~~g~~~----eA~~lf~~M~~~g~-~pd~~t~~~ll~a 334 (697)
T PLN03081 266 IDMYSKCGDI--EDARCVFDGMPEKTTV----AWNSMLAGYALHGYSE----EALCLYYEMRDSGV-SIDQFTFSIMIRI 334 (697)
T ss_pred HHHHHHCCCH--HHHHHHHHhCCCCChh----HHHHHHHHHHhCCCHH----HHHHHHHHHHHcCC-CCCHHHHHHHHHH
Confidence 9999999987 9999999988653211 00000 0111111111 12222335666677 8999999999999
Q ss_pred HHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH
Q 013323 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM 346 (445)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~ 346 (445)
|++.|++++|.+++..|.+.|+.||..+|++||.+|+++|++++|.++|++|.+ ||..+||+||. +|+++|.
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~----~y~~~G~ 406 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIA----GYGNHGR 406 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHH----HHHHcCC
Confidence 999999999999999999999999999999999999999999999999999964 69999999999 7999999
Q ss_pred -HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHH-CCCCCCHHHHHHHHhhhhccCCCCCCCc-
Q 013323 347 -QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA-RKITPSLPAVEAYYNGLKDREVPADDPR- 423 (445)
Q Consensus 347 -~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~- 423 (445)
++|.++|++|.+.|+.||..||+.+|.+|. +.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|..++|..
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~--~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACR--YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999998 99999999999999985 7999999999999999999998887753
Q ss_pred ---------------hhhhhhccccccccCccc
Q 013323 424 ---------------LVVVSRAYDNLLRGRPGA 441 (445)
Q Consensus 424 ---------------~l~~~~~~~~~~~~~~~~ 441 (445)
++++|+.+|+...|+.++
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 566777888887776554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.5e-53 Score=420.90 Aligned_cols=373 Identities=13% Similarity=0.105 Sum_probs=332.9
Q ss_pred hcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH
Q 013323 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112 (445)
Q Consensus 34 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 112 (445)
.....++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..
T Consensus 80 ~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred cccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 34467788999999999999999999999999998864 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 192 (445)
+||.||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|+
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 999999999999999999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhccc
Q 013323 193 NKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD 272 (445)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~ 272 (445)
+.|.. +.+.+++..+.+.+..+..................+....+.. ....+|..+||++|.+|++.|+
T Consensus 236 ~~~~~--~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~--------~m~~~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 236 GLGSA--RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD--------GMPEKTTVAWNSMLAGYALHGY 305 (697)
T ss_pred cCCcH--HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH--------hCCCCChhHHHHHHHHHHhCCC
Confidence 99876 8899999998887654433222222111111222222211111 1126799999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHH
Q 013323 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQD 351 (445)
Q Consensus 273 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~ 351 (445)
+++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+|++||+ +|++.|. +.|.+
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~----~y~k~G~~~~A~~ 381 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD----LYSKWGRMEDARN 381 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH----HHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 7899999 99999
Q ss_pred HHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhhhhhc
Q 013323 352 TLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRA 430 (445)
Q Consensus 352 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~ 430 (445)
+|++|.+ ||..+|+.+|.+|+ +.|+.++|.++|++|.+.|+.||..||++++.+|++.|..+++..++..+..
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~--~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYG--NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999964 78999999999998 9999999999999999999999999999999999999999999888877753
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-52 Score=426.21 Aligned_cols=382 Identities=14% Similarity=0.067 Sum_probs=254.4
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 013323 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP 109 (445)
Q Consensus 30 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 109 (445)
.+.......||+++||++|.+|++.|++++|+++|++|...|+.||..||+.+|++|++.+++..+.+++..|.+.|+.|
T Consensus 141 ~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 141 WYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220 (857)
T ss_pred HHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCc
Confidence 44445555799999999999999999999999999999999999999999888888877777777777777777777777
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
|..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 77777777777777776666666666665 25556666666666666666666666666666666666666666666
Q ss_pred HHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchh----------------------------hhcchh
Q 013323 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE----------------------------ELYNLP 241 (445)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 241 (445)
+|++.|+. +.+.+++..+.+.+..++.................+ ......
T Consensus 297 a~~~~g~~--~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 297 ACELLGDE--RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHhcCCh--HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 66665544 555555555555433222111110000000000000 011111
Q ss_pred hhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 242 ~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.....|...|+ .||..||+++|.+|++.|+++.|.++++.|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+.
T Consensus 375 ~lf~~M~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 375 ETYALMEQDNV-SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHhCC-CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 11223334444 56666666666666666666666666666666666666666666666666666666666666666543
Q ss_pred CCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCC------------------------------------
Q 013323 322 EKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLS------------------------------------ 364 (445)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~------------------------------------ 364 (445)
|..+|+++|. +|+++|. ++|.++|++|.. ++.||
T Consensus 454 ----d~vs~~~mi~----~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 454 ----DVISWTSIIA----GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred ----CeeeHHHHHH----HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 4445555555 4455555 555555555543 24444
Q ss_pred -----------------------------cchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhcc
Q 013323 365 -----------------------------PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415 (445)
Q Consensus 365 -----------------------------~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 415 (445)
..+|+.+|.+|+ +.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~--~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYV--AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 445666666666 8999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhh
Q 013323 416 EVPADDPRLVVVSR 429 (445)
Q Consensus 416 ~~~~~a~~~l~~~~ 429 (445)
|..+++..++..++
T Consensus 603 g~v~ea~~~f~~M~ 616 (857)
T PLN03077 603 GMVTQGLEYFHSME 616 (857)
T ss_pred ChHHHHHHHHHHHH
Confidence 99999998888776
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.3e-19 Score=167.70 Aligned_cols=313 Identities=13% Similarity=0.072 Sum_probs=248.5
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccC
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD---VAVYNYLISVCGKCK 125 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g 125 (445)
..+...|++++|.+.|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567899999999999999864 23556788899999999999999999999988642222 357889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCCchHH
Q 013323 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK----FCYAGLITAHTNKIPRADDT 201 (445)
Q Consensus 126 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~~~ 201 (445)
++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|+. +.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~ 198 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL--DA 198 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH--HH
Confidence 9999999999998753 356789999999999999999999999999886533322 2344555666777765 88
Q ss_pred HHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHH
Q 013323 202 ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281 (445)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 281 (445)
|...++.+.+.. +.+...+..+...+.+.|++++|.++++
T Consensus 199 A~~~~~~al~~~----------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 199 ARALLKKALAAD----------------------------------------PQCVRASILLGDLALAQGDYAAAIEALE 238 (389)
T ss_pred HHHHHHHHHhHC----------------------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999998876532 3344567788899999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCC
Q 013323 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 282 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~ 360 (445)
++.+.+......+++.+..+|+..|++++|.+.++.+.+. .|+...+..+.. .+.+.|. ++|..+++++.+.
T Consensus 239 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~----~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 239 RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQ----LLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred HHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHH----HHHHhCCHHHHHHHHHHHHHh-
Confidence 9987532223467889999999999999999999999876 466666666666 5788888 9999999998876
Q ss_pred CCCCcchhhHHHHHhh-cccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCC
Q 013323 361 IFLSPRMGSDLLLVAA-GEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPA 419 (445)
Q Consensus 361 ~~p~~~~~~~ll~~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 419 (445)
.|+..++..++..+. ....|+.+++..++++|.++++.|++. ..|...|...
T Consensus 312 -~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~ 364 (389)
T PRK11788 312 -HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTA 364 (389)
T ss_pred -CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCC
Confidence 588888887776654 112679999999999999999998887 3355556553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=1.5e-17 Score=173.61 Aligned_cols=368 Identities=10% Similarity=-0.050 Sum_probs=278.1
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
..+..++..+...+.+.|++++|...|+++.+.+ +.+...+..+...+.+.|++++|..+++.+.+.. +.+..+|..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 4567888899999999999999999999987754 3466778888899999999999999999998754 4578889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
..++.+.|++++|...|+.+.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|+.
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998753 2356778889999999999999999999988753 33577888888888888876
Q ss_pred chHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHH
Q 013323 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 277 (445)
+.+.++++.+.....................+...+.. ......-...|+..++..+...+.+.|+.++|.
T Consensus 686 --~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 686 --ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI-------QAYRKALKRAPSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred --HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH-------HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHH
Confidence 88999998887654221111000000000011111111 011110011455567888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhHHHHHHHHHHHH
Q 013323 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMN 357 (445)
Q Consensus 278 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~~~a~~~~~~m~ 357 (445)
+.++.+.+.. +.+..++..+...|...|++++|.+.|+.+.+.. +++...++.+.. .+...|..+|...+++..
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~----~~~~~~~~~A~~~~~~~~ 830 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAW----LYLELKDPRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH----HHHhcCcHHHHHHHHHHH
Confidence 9999888753 4577889999999999999999999999998874 346777777766 455666667999999988
Q ss_pred hCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhhhh
Q 013323 358 SRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVS 428 (445)
Q Consensus 358 ~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~ 428 (445)
+.. +-++.++..+...+. ..|++++|..+|+++.+.+.. ++.++..+...+++.|..++|..++.-+
T Consensus 831 ~~~-~~~~~~~~~~~~~~~--~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 831 KLA-PNIPAILDTLGWLLV--EKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred hhC-CCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 754 224445555555555 999999999999999986643 8899999999999999999998876543
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=5e-18 Score=147.98 Aligned_cols=357 Identities=12% Similarity=0.154 Sum_probs=259.1
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 013323 32 YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV 111 (445)
Q Consensus 32 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 111 (445)
.-......+..+|..+|.++|+....+.|.+++++-.....+.+..+||.+|.+.+-.. ..+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCch
Confidence 34445567899999999999999999999999999999888999999999998765333 38899999999999999
Q ss_pred HHHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhh-HHHHHHHHH----HcCCCC---
Q 013323 112 AVYNYLISVCGKCKNSDQ----AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP-VYAIVRDMT----AAGAGL--- 179 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~-a~~~~~~m~----~~g~~p--- 179 (445)
.|||+++++.++.|+++. |.+++.+|++-|+.|...+|..+|..+++-++..+ +..+..++. .+.++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998754 67888999999999999999999999999998855 334444443 333433
Q ss_pred -CHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchh
Q 013323 180 -DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258 (445)
Q Consensus 180 -~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 258 (445)
|...|...+..|.+..+. +.|.++.+.++...+|..+.. ......
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~--~LA~~v~~ll~tg~N~~~ig~--------------------------------~~~~~f 399 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDL--ELAYQVHGLLKTGDNWKFIGP--------------------------------DQHRNF 399 (625)
T ss_pred chhHHHHHHHHHHHHhhhH--HHHHHHHHHHHcCCchhhcCh--------------------------------HHHHHH
Confidence 466778888888877655 889999999998776643211 011123
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHh
Q 013323 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 338 (445)
-|..+....|.....+.....++.|.-+-.-|+..+...++++....|+++-.-++|.++...|..-+...-.-++.-++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 45667778888888999999999998887889999999999999999999999999998887763222222222222111
Q ss_pred hc-----------------CChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHC-CCC
Q 013323 339 FG-----------------YTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR-KIT 399 (445)
Q Consensus 339 ~~-----------------~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~-~~~ 399 (445)
.- -+.... +....--.+|++..+.|. ..+....... +.|..++|.++|..+.+. .-.
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~--R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLL--RAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHH--HcchHHHHHHHHHHHHhcCCcC
Confidence 00 011111 222223344555555443 3333333344 899999999999999643 223
Q ss_pred ---CCHHHHHHHHhhhhccCCCCCCCchhhhhhc
Q 013323 400 ---PSLPAVEAYYNGLKDREVPADDPRLVVVSRA 430 (445)
Q Consensus 400 ---p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~ 430 (445)
|.......|++.-...+.+-.|...+.....
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444444566666667777788888777733
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.1e-17 Score=157.52 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=228.2
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT---RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 115 (445)
.+..+|..+...+...|++++|.++++.+...+..++ ...+..+...+.+.|+++.|..+|+++.+.. +++..+++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 3566888999999999999999999999987643222 2467888899999999999999999998763 35678999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPN----GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 191 (445)
.+...+.+.|++++|.+.++.+.+.+..++ ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 999999999999999999999987653332 2345677788899999999999999998754 23456777778888
Q ss_pred HccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcc
Q 013323 192 TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271 (445)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g 271 (445)
.+.|+. +.|.+.++.+..... .....+++.+..+|.+.|
T Consensus 225 ~~~g~~--~~A~~~~~~~~~~~p---------------------------------------~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 225 LAQGDY--AAAIEALERVEEQDP---------------------------------------EYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHCCCH--HHHHHHHHHHHHHCh---------------------------------------hhHHHHHHHHHHHHHHcC
Confidence 888876 889999998775420 112356788999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQ 350 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~ 350 (445)
++++|...++.+.+. .|+...+..+...+.+.|++++|.++|+++.+. .|+..+++.++...+ .....|. +++.
T Consensus 264 ~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~-~~~~~g~~~~a~ 338 (389)
T PRK11788 264 DEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL-AEAEEGRAKESL 338 (389)
T ss_pred CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh-hccCCccchhHH
Confidence 999999999998875 577777788999999999999999999998875 689999998887432 1122556 8999
Q ss_pred HHHHHHHhCCCCCCcc
Q 013323 351 DTLVNMNSRNIFLSPR 366 (445)
Q Consensus 351 ~~~~~m~~~~~~p~~~ 366 (445)
.++++|.++++.|++.
T Consensus 339 ~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 339 LLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999998887
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=2.1e-16 Score=164.99 Aligned_cols=363 Identities=11% Similarity=0.008 Sum_probs=244.5
Q ss_pred CCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 013323 36 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115 (445)
Q Consensus 36 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 115 (445)
...++...|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++.
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 345677888888899999999999999999887653 2345567777888888899999999999888765 34677888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 195 (445)
.+...+.+.|+.++|..+|+++...+ +.+...+..+...+.+.|++++|..+++.+.+.. +.+..+|..+...+...|
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 88888888888999988888887654 3456677788888888888888888888887643 446777888888888877
Q ss_pred CCchHHHHHHHHHHHHhcCCccccccccccch-hhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHH
Q 013323 196 PRADDTATKIIELVEQSKGWSSVETSGNNAEN-EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274 (445)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 274 (445)
+. +.+...++.+........... ...... ...+...+... ..... -...+.+..++..+...+...|+++
T Consensus 616 ~~--~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~-~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 616 DL--NKAVSSFKKLLALQPDSALAL-LLLADAYAVMKNYAKAIT-SLKRA-----LELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred CH--HHHHHHHHHHHHhCCCChHHH-HHHHHHHHHcCCHHHHHH-HHHHH-----HhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 66 778888877765432111000 000000 00011111110 00000 0111445667777888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHH
Q 013323 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTL 353 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~ 353 (445)
+|.++++.+.+.. +++...+..+...+...|++++|.+.|+.+...+ |+..++..+.. .+.+.|. ++|.+.+
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~----~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR----ALLASGNTAEAVKTL 759 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH----HHHHCCCHHHHHHHH
Confidence 8888888877654 3456667777777888888888888888877653 44455555555 4566676 7788877
Q ss_pred HHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCc
Q 013323 354 VNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPR 423 (445)
Q Consensus 354 ~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 423 (445)
+++.+.. +.+...+..+...+. +.|++++|...|+++.+.. ++++..+..+...+.+.|. ++|..
T Consensus 760 ~~~l~~~-~~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 760 EAWLKTH-PNDAVLRTALAELYL--AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHH--HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 7777654 234445555555554 7788888888888877543 3456666666666666665 44444
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=9.2e-15 Score=127.87 Aligned_cols=313 Identities=16% Similarity=0.162 Sum_probs=225.7
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+..||.++|.++|+-...+.|..+|++-.....+.+..+||.+|.+-+-.- ..+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 456899999999999999999999999998888899999999998765432 3789999999999999999999999
Q ss_pred HHHHcCChhh----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh---cCCccccccccccch
Q 013323 155 ACAAAGQLDP----VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS---KGWSSVETSGNNAEN 227 (445)
Q Consensus 155 ~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ 227 (445)
+..+.|+++. |.+++.+|++-|+.|+..+|..+|.-+++.++. ...+..+...+... +.+.+.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp-~k~as~~i~dI~N~ltGK~fkp~--------- 351 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP-QKVASSWINDIQNSLTGKTFKPI--------- 351 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc-hhhhHHHHHHHHHhhccCcccCC---------
Confidence 9999998865 678899999999999999999999998887653 12233333333221 111111
Q ss_pred hhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCCCH---HHHHHHHH
Q 013323 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSPDV---YIVMQNIR 300 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~---~~~~~li~ 300 (445)
.+.|...|...|..|.+..+.+.|.++..-++.. -+.|+. .-|..+..
T Consensus 352 -------------------------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 352 -------------------------TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred -------------------------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 1556678899999999999999999998877643 234443 35777888
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhh---
Q 013323 301 CYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAA--- 376 (445)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--- 376 (445)
+.|....++.-+.+|+.|.-.-+.|+..+-..++++ ....+. +-.-++|.++...|-..+.+.-..++...+
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA----~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA----LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH----HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 999999999999999999999888999998888884 445555 666666666665542222222222221111
Q ss_pred ----------------cccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhhhh-hccc
Q 013323 377 ----------------GEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVS-RAYD 432 (445)
Q Consensus 377 ----------------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~-~~~~ 432 (445)
-|...-.+....--.+|++..+.| ...+...--+.+.|...+|..+++.+ ++++
T Consensus 483 ~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 483 LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 001222222233344555555544 45666777788999999999998887 4433
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.63 E-value=5.7e-12 Score=125.10 Aligned_cols=131 Identities=10% Similarity=0.063 Sum_probs=95.0
Q ss_pred cCchhHHHHHHHHHHhcccHHH----HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-H
Q 013323 254 SRLLTVYHVAFHACAELKDVQA----METLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-A 327 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~ 327 (445)
+.+...+..+-..+...|++++ |...++...+. .| +...+..+...+...|++++|...++..... .|+ .
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~ 318 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLP 318 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 4456677778888888998875 78888887763 45 5668888889999999999999999988875 343 3
Q ss_pred HHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhH-HHHHhhcccCCChhhHHHHHHHHHHC
Q 013323 328 ELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSD-LLLVAAGEKSGGYTTANYIWDLMQAR 396 (445)
Q Consensus 328 ~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~g~~~~A~~~~~~m~~~ 396 (445)
..+..+-. .+.+.|. ++|...++++.+.+ |+...+.. +..++. ..|+.++|...|++..+.
T Consensus 319 ~a~~~La~----~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~--~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 319 YVRAMYAR----ALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALL--QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHH----HHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH--HCCCHHHHHHHHHHHHHh
Confidence 34444444 4677788 99999999888754 55433322 233344 899999999999988754
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.61 E-value=3.8e-12 Score=126.34 Aligned_cols=326 Identities=10% Similarity=-0.015 Sum_probs=242.3
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 122 (445)
-.-.++..+.+.|++++|..+++........+ ...+..+..+....|+++.|...|+.+.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34456788899999999999999998765433 3344455566677999999999999999865 235678888899999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a 202 (445)
+.|++++|...|++..... +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|+. +.|
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~--~eA 196 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRL--PED 196 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCH--HHH
Confidence 9999999999999998752 2346788899999999999999999999887654322 2233333 335666765 888
Q ss_pred HHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 013323 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 282 (445)
...++.+..... .++...+..+..++...|+.++|...++.
T Consensus 197 ~~~~~~~l~~~~---------------------------------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 197 HDLARALLPFFA---------------------------------------LERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHHHHhcCC---------------------------------------CcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888887654321 12233445566788899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhh----HHHHHHHHHhCCCCC-CHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDN----GHKVFEDYICSEKFP-PAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 283 m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
..+.. +.+...+..+-..|...|++++ |...|+...+. .| +...+..+-. .+...|. ++|...+++.
T Consensus 238 al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~----~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 238 ALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYAD----ALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHH----HHHHCCCHHHHHHHHHHH
Confidence 88753 2356678888999999999986 89999988875 34 4556666655 5677888 9999999999
Q ss_pred HhCCCCCCc-chhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHH-HHHHHhhhhccCCCCCCCchhhh
Q 013323 357 NSRNIFLSP-RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPA-VEAYYNGLKDREVPADDPRLVVV 427 (445)
Q Consensus 357 ~~~~~~p~~-~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~l~~ 427 (445)
.+.. |+. ..+..+..++. +.|++++|...|+++... .|+... +..+...+...|..++|...+..
T Consensus 311 l~l~--P~~~~a~~~La~~l~--~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 311 LATH--PDLPYVRAMYARALR--QVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHhC--CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8764 443 34445555555 999999999999999864 355433 33345668889999998876554
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=1.7e-13 Score=130.09 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=62.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 013323 63 VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV 142 (445)
Q Consensus 63 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 142 (445)
++-.|...|+.||..||..+|.-||..|+.+.|- +|..|.-..++.+...|+.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4555666677777777777777777777777776 7777766666666677777777777777766665
Q ss_pred CccHHHHHHHHHHHHHcCChhh
Q 013323 143 KPNGQTYVCLLNACAAAGQLDP 164 (445)
Q Consensus 143 ~p~~~~y~~li~~~~~~g~~~~ 164 (445)
.|.+.||+.++.+|.+.||+.-
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 4666777777777777776644
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=1.1e-10 Score=115.99 Aligned_cols=359 Identities=9% Similarity=-0.055 Sum_probs=202.5
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
..-..+.+.|+++.|+..|++..+ +.|+...|..+-.++.+.|++++|...++...+.. +.+...|..+-.+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 344555666777777777766554 34566666666666666677777777776666643 123456666666666677
Q ss_pred CHHHHHHHHHHHHhCC-C---------------------------Cc----cHHHHHHH---------------------
Q 013323 126 NSDQAIRIFEEMKKYE-V---------------------------KP----NGQTYVCL--------------------- 152 (445)
Q Consensus 126 ~~~~a~~~~~~m~~~g-~---------------------------~p----~~~~y~~l--------------------- 152 (445)
++++|+.-|......+ . .| ........
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7666655443322110 0 00 00000000
Q ss_pred ------HHHH------HHcCChhhHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccc
Q 013323 153 ------LNAC------AAAGQLDPVYAIVRDMTAAG-AGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218 (445)
Q Consensus 153 ------i~~~------~~~g~~~~a~~~~~~m~~~g-~~p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 218 (445)
+... ...+++++|.+.|+...+.+ ..|+ ...+..+-..+...|+. +.|...++.......-...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~--~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH--LEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCcHH
Confidence 0000 01235666666666666543 2232 33344444444555544 5666666554432210000
Q ss_pred cccccccch-hhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHH
Q 013323 219 ETSGNNAEN-EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVM 296 (445)
Q Consensus 219 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~ 296 (445)
........ ...+...+....+ ... . ...+.+..+|..+...+...|++++|...|+...+. .| +...+.
T Consensus 367 -~~~~la~~~~~~g~~~eA~~~~-~~a--l---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 367 -SYIKRASMNLELGDPDKAEEDF-DKA--L---KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHH-HHH--H---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 00000000 0000001111000 000 0 001445678888888899999999999999988764 34 566777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhh------
Q 013323 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGS------ 369 (445)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~------ 369 (445)
.+...+.+.|++++|+..|+...... +-+...|+.+-. .+...|+ ++|.+.|++..+..-..+....+
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~----~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGE----LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHH----HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 78888999999999999999887652 224556666655 4677787 99999999987654221111111
Q ss_pred HHHHHhhcccCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHhhhhccCCCCCCCchhhh
Q 013323 370 DLLLVAAGEKSGGYTTANYIWDLMQARKITPS-LPAVEAYYNGLKDREVPADDPRLVVV 427 (445)
Q Consensus 370 ~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~ 427 (445)
.....+. ..|++++|..++++....+ |+ ...+..+...+.+.|..++|..++..
T Consensus 513 ~a~~~~~--~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 513 KALALFQ--WKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHH--HhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1111222 4699999999999887654 43 34577788889999999999875544
No 17
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=3.8e-14 Score=89.57 Aligned_cols=49 Identities=43% Similarity=0.663 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013323 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157 (445)
Q Consensus 109 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 157 (445)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555554443
No 18
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=4.8e-14 Score=89.13 Aligned_cols=50 Identities=22% Similarity=0.419 Sum_probs=35.6
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 88 (445)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777654
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=8.8e-12 Score=118.68 Aligned_cols=252 Identities=10% Similarity=0.076 Sum_probs=175.4
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 013323 28 GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107 (445)
Q Consensus 28 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 107 (445)
....+...|+.|+.++|.++|.-||..|+.+.|- +|..|+-.....+...|+.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3456778999999999999999999999999999 9999998888889999999999999999998887
Q ss_pred CCCHHHHHHHHHHHHccCCHHH---HHHHHHHHH----hCCCCccHHHHHH---------------HHHHHHHcCChhhH
Q 013323 108 LPDVAVYNYLISVCGKCKNSDQ---AIRIFEEMK----KYEVKPNGQTYVC---------------LLNACAAAGQLDPV 165 (445)
Q Consensus 108 ~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~----~~g~~p~~~~y~~---------------li~~~~~~g~~~~a 165 (445)
.|...||+.|+.+|.+.||+.. +.+.+.... ..|+. ...-|-. ++.-.+-.|-++.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999755 333222221 12221 1111111 11111222222222
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhh
Q 013323 166 YAIVRDMTAAG-AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244 (445)
Q Consensus 166 ~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
++++..+.... .-|... ++.-+... ..-.+++........
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~----ntpvekLl~~cksl~------------------------------- 199 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVD----NTPVEKLLNMCKSLV------------------------------- 199 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccC----CchHHHHHHHHHHhh-------------------------------
Confidence 22222221100 001111 12222221 122444444433321
Q ss_pred HHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 013323 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324 (445)
Q Consensus 245 ~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 324 (445)
-.+++.+|.+++++-.-.|+++.|..++.+|++.|++.+.+-|..|+-+ .++...+..+..-|.+.|+.
T Consensus 200 --------e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~ 268 (1088)
T KOG4318|consen 200 --------EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQ 268 (1088)
T ss_pred --------cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCC
Confidence 1588899999999999999999999999999999999999888888865 88889999999999999999
Q ss_pred CCHHHHHHHHHhHhhcCChhhH
Q 013323 325 PPAELYATLVEGAMFGYTPKGM 346 (445)
Q Consensus 325 p~~~~~~~li~~~~~~~~~~g~ 346 (445)
|+..|+...+. .+..+|.
T Consensus 269 p~seT~adyvi----p~l~N~~ 286 (1088)
T KOG4318|consen 269 PGSETQADYVI----PQLSNGQ 286 (1088)
T ss_pred CCcchhHHHHH----hhhcchh
Confidence 99999998887 4455443
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.46 E-value=5.9e-10 Score=118.43 Aligned_cols=363 Identities=13% Similarity=0.073 Sum_probs=232.4
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC-CHHHHHHH------------HHHHhcCCChhHHHHHHHHHHHCC
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP-TRDLFHSL------------IVGTMKGSRLQDTFFFRDQMKANG 106 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~~g 106 (445)
+...+..+-..+.+.|++++|.+.|++..+..-.. +...|..+ -..+.+.|++++|...|++..+..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67788888899999999999999999887653211 21222211 235668899999999999998864
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHH----------------------------------
Q 013323 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVC---------------------------------- 151 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~---------------------------------- 151 (445)
+.+...+..+-..+...|++++|++.|++..+.. |+ ...+..
T Consensus 382 -P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 382 -NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2456677788899999999999999999987642 22 222222
Q ss_pred --------HHHHHHHcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccc
Q 013323 152 --------LLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222 (445)
Q Consensus 152 --------li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 222 (445)
+...+...|++++|.+.|++..+.. | +...+..+...+.+.|+. +.|...++.+.....-.+.. ..
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~--~~A~~~l~~al~~~P~~~~~-~~ 533 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQR--SQADALMRRLAQQKPNDPEQ-VY 533 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCHHH-HH
Confidence 2233456788889999998888753 4 455666777788888866 88988888876533211100 00
Q ss_pred cccchhh-cccchhhh---cchhhhhH--HhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHH
Q 013323 223 NNAENEM-MGVSKEEL---YNLPTAEY--VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVM 296 (445)
Q Consensus 223 ~~~~~~~-~~~~~~~~---~~~~~~~~--~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 296 (445)
....... .+...+.+ ..++.... .+..-.. ......+......+...|+.++|..+++. .+++...+.
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~ 607 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-RLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-HHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHH
Confidence 0000000 00001111 00000000 0000000 00011223456678888999999998872 234556677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCc-chhhHHHHH
Q 013323 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSP-RMGSDLLLV 374 (445)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~-~~~~~ll~~ 374 (445)
.+-..+.+.|++++|.+.|+...+.. +.+...+..+.. .|...|+ ++|.+.++...+. .|+. .....+-.+
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~----~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~ 680 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIE----VDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALA 680 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH----HHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHH
Confidence 78889999999999999999998863 225666666666 5677888 9999999987764 3433 344444555
Q ss_pred hhcccCCChhhHHHHHHHHHHCCC--CC---CHHHHHHHHhhhhccCCCCCCCchh
Q 013323 375 AAGEKSGGYTTANYIWDLMQARKI--TP---SLPAVEAYYNGLKDREVPADDPRLV 425 (445)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~~~~~~a~~~l 425 (445)
+. ..|++++|..++++.....- .| +...+..+...+.+.|.+++|...+
T Consensus 681 ~~--~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 681 WA--ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HH--hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55 89999999999999986432 22 2234544556677778877777643
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.43 E-value=1.4e-09 Score=108.28 Aligned_cols=297 Identities=11% Similarity=0.015 Sum_probs=192.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
+...-..+.+.|+++.|...|++..+. .|+...|..+-.+|.+.|++++|++.++...+.. +.+...|..+-.+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445556788899999999999998874 5888899999999999999999999999988753 2246688889999999
Q ss_pred cCChhhHHHHHHHHHHcC-C---------------------------C----CCHHHHHHHHHH----------------
Q 013323 159 AGQLDPVYAIVRDMTAAG-A---------------------------G----LDKFCYAGLITA---------------- 190 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g-~---------------------------~----p~~~~~~~li~~---------------- 190 (445)
.|++++|..-|......+ . . |...........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999987664432211 0 0 111111111100
Q ss_pred -------HH----------ccCCCchHHHHHHHHHHHHhcCCcccccccccc---chhhcccchhhhcchhhhhHHhhhc
Q 013323 191 -------HT----------NKIPRADDTATKIIELVEQSKGWSSVETSGNNA---ENEMMGVSKEELYNLPTAEYVHRRG 250 (445)
Q Consensus 191 -------~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (445)
+. ..+ ..+.+...++.........+........ .....+...+++..+....
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~--~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal------ 358 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADE--SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI------ 358 (615)
T ss_pred ccccccchHHHHHHHHHhhhhh--hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Confidence 00 011 2477888888776543211100000000 0001111111111111000
Q ss_pred CcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHH
Q 013323 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-AEL 329 (445)
Q Consensus 251 g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~ 329 (445)
...+.+...|..+...+...|++++|...++...+.. +.+..+|..+...+...|++++|...|+...+. .|+ ...
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~ 435 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFS 435 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHH
Confidence 0113335577778888888999999999999887642 225677888888899999999999999988775 343 334
Q ss_pred HHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHC
Q 013323 330 YATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396 (445)
Q Consensus 330 ~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~ 396 (445)
+..+-. .+.+.|. +.|...|++..+.. +-++..+..+-..+. ..|++++|...|++....
T Consensus 436 ~~~la~----~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~--~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 436 HIQLGV----TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLL--DQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHH----HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH--HccCHHHHHHHHHHHHhc
Confidence 433333 4667777 99999999887653 224566666666666 899999999999987753
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.39 E-value=5.2e-09 Score=106.39 Aligned_cols=155 Identities=10% Similarity=-0.000 Sum_probs=83.8
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
-.+......|+.++|++++....... +.+...+..+-.++.+.|++++|..+|++..+.. +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34455556666666666666665411 2334446666666666666666666666665542 223445556666666666
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHH
Q 013323 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205 (445)
Q Consensus 126 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~ 205 (445)
++++|...+++..... +.+.. +..+...+...|+.++|+..+++..+..- -+...+..+..++...+.. +.|...
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~--e~Al~~ 172 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS--APALGA 172 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh--HHHHHH
Confidence 6666666666665541 12333 55566666666666666666666666421 1233333344444444433 444444
Q ss_pred HH
Q 013323 206 IE 207 (445)
Q Consensus 206 ~~ 207 (445)
++
T Consensus 173 l~ 174 (765)
T PRK10049 173 ID 174 (765)
T ss_pred HH
Confidence 43
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=1.2e-09 Score=102.33 Aligned_cols=280 Identities=9% Similarity=-0.011 Sum_probs=176.0
Q ss_pred cCcHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 013323 54 QRRFFLLRDVYDDMMLDGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN--YLISVCGKCKNSDQA 130 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a 130 (445)
.|+++.|.+.+..-.+.. ++... |.....+..+.|+.+.|.+.+.++.+. .|+....- .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 488998887777654432 22222 333344457889999999999998874 35544333 335677888999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHccCCCchHHHH
Q 013323 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF-------CYAGLITAHTNKIPRADDTAT 203 (445)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~~~~~~~~a~ 203 (445)
...+++..+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++....... +.+...
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--GSEGLK 249 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--CHHHHH
Confidence 99999988765 2357788888999999999999999999998876543221 1222222211111 113333
Q ss_pred HHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 013323 204 KIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283 (445)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 283 (445)
++++.+.+. .+.+......+..++...|+.++|.++++..
T Consensus 250 ~~w~~lp~~----------------------------------------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 250 RWWKNQSRK----------------------------------------TRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHhCCHH----------------------------------------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333332221 1345556677777778888888888887776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCC
Q 013323 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE-LYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNI 361 (445)
Q Consensus 284 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~ 361 (445)
.+. .||.... ++.+.+..++.+++.+..+...+. .|+.. .+..+=. .+.+.+. ++|.+.|+...+.
T Consensus 290 l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgr----l~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 290 LKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQ----LLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred Hhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHH----HHHHCCCHHHHHHHHHHHHhc--
Confidence 653 3444211 233444557777777777777665 33333 3333333 3455665 7788888777764
Q ss_pred CCCcchhhHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 362 ~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
.|+..++..+-..+. +.|+.++|..++++-.
T Consensus 358 ~P~~~~~~~La~~~~--~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALD--RLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 367777666666666 7788888877777654
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.38 E-value=5.9e-09 Score=105.98 Aligned_cols=369 Identities=11% Similarity=-0.014 Sum_probs=217.7
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...+...|+.++|...+++..+.. +.+.. +..+-
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 445568889999999999999999999987652 2346667778888899999999999999998863 33455 88888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH------HHHHHHHHHHH
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK------FCYAGLITAHT 192 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~ 192 (445)
.++...|+.++|+..+++..+... -+...+..+...+...+..++|+..++.... .|+. ......+....
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999988532 2455566677788888888888888775543 2221 01111122111
Q ss_pred ccCCC------chHHHHHHHHHHHHhcCCcccc-cccccc-----chhhcccchhhhcchhhhhHHhhhcCcccCchhHH
Q 013323 193 NKIPR------ADDTATKIIELVEQSKGWSSVE-TSGNNA-----ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY 260 (445)
Q Consensus 193 ~~~~~------~~~~a~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 260 (445)
..+.. ..+.|...++.+.....-.+.. ...... ..+......+..... .......+...|+. .-
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~---~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE---YQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH---HHHhhccCCCCCHH-HH
Confidence 11110 0134555555555431111100 000000 000000000111100 01111111101221 11
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-----------CCCC
Q 013323 261 HVAFHACAELKDVQAMETLLEMLKKDRKSP---DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE-----------KFPP 326 (445)
Q Consensus 261 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~p~ 326 (445)
..+..++...|++++|...++.+.+..-.. .......+..++...|++++|.++++.+.... -.|+
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 124557888888888888888876532111 13445666677888888888888888887652 1123
Q ss_pred HH---HHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCC-
Q 013323 327 AE---LYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS- 401 (445)
Q Consensus 327 ~~---~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~- 401 (445)
.. .+..+.. .+...|+ ++|+++++++.... +-+...+..+...+. +.|++++|+..+++..... |+
T Consensus 356 ~~~~~a~~~~a~----~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~--~~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 356 DDWLQGQSLLSQ----VAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ--ARGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred chHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhC--CCC
Confidence 21 2222222 3556677 88888888887654 234445555555555 8888888888888777533 55
Q ss_pred HHHHHHHHhhhhccCCCCCCCchhhh
Q 013323 402 LPAVEAYYNGLKDREVPADDPRLVVV 427 (445)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~l~~ 427 (445)
...+......+.+.|..++|..++..
T Consensus 427 ~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 427 INLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33334444455666666666655433
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.37 E-value=4.2e-09 Score=105.53 Aligned_cols=366 Identities=11% Similarity=0.029 Sum_probs=219.5
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
.++..+...|+.++|+..+++.... -..+......+...+...|++++|.++|+++.+.. +-+...+..+...+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 6777777778888888888777511 11122222333446677788888888888887764 223566667777788888
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHH
Q 013323 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205 (445)
Q Consensus 126 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~ 205 (445)
+.++|++.+++.... .|+...+-.++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-. ..|.++
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~--~~a~~l 225 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIV--EPALRL 225 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCc--HHHHHH
Confidence 888888888887764 4555555334333333455555888888887763 22456666677777776643 334433
Q ss_pred HHHHHHhcCCccccccc-----cccchhhcc----cchhhhcchh-----hhhHHhhhcCcccCchhHH----HHHHHHH
Q 013323 206 IELVEQSKGWSSVETSG-----NNAENEMMG----VSKEELYNLP-----TAEYVHRRGGFLSRLLTVY----HVAFHAC 267 (445)
Q Consensus 206 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~----~~li~~~ 267 (445)
.. +...|-...... ..+..+..+ ....+-+... .........+..++....| -=.+-++
T Consensus 226 ~~---~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 226 AK---ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HH---hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 32 222111100000 000000000 0000000000 0011111111112221222 2356667
Q ss_pred HhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-----CCCCHHHHHHHHHhHhhcCC
Q 013323 268 AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE-----KFPPAELYATLVEGAMFGYT 342 (445)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~~~ 342 (445)
...++..++.+.++.|...+.+...++-..+.++|...+++++|..+|..+.... ..++......|.- +|.
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y----A~l 378 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY----SLN 378 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH----HHH
Confidence 8888999999999999988876667788889999999999999999999987652 1223333456666 678
Q ss_pred hhhH-HHHHHHHHHHHhCCC-----------CCCc--chhhH-HHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 013323 343 PKGM-QLAQDTLVNMNSRNI-----------FLSP--RMGSD-LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEA 407 (445)
Q Consensus 343 ~~g~-~~a~~~~~~m~~~~~-----------~p~~--~~~~~-ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 407 (445)
..+. ++|..+++++.+.-. .||+ ..+.. ++..+. ..|+..+|++.++++... -+-|......
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~--~~gdl~~Ae~~le~l~~~-aP~n~~l~~~ 455 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV--ALNDLPTAQKKLEDLSST-APANQNLRIA 455 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 8888 999999999987321 1222 12222 233334 899999999999999643 2446666777
Q ss_pred HHhhhhccCCCCCCCchhhhh
Q 013323 408 YYNGLKDREVPADDPRLVVVS 428 (445)
Q Consensus 408 l~~~~~~~~~~~~a~~~l~~~ 428 (445)
+-+.+...|.+.+|...++..
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 777788888888888766553
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=4.4e-12 Score=113.33 Aligned_cols=259 Identities=11% Similarity=0.041 Sum_probs=92.5
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 124 (445)
.+-..+.+.|++++|+++++.-....-+|+... |..+-..+...++.+.|.+.++.+...+- -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 446677788999999998865444432344443 44455566678889999999998887653 256667777777 688
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCCchHHHH
Q 013323 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLITAHTNKIPRADDTAT 203 (445)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~~a~ 203 (445)
+++++|.++++..-+. .++...+...+..+.+.++++++..+++.+.... .+++...|...-..+.+.|+. +.|.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~--~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP--DKAL 166 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH--HHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH--HHHH
Confidence 8889998888776554 2566777888888888999999999988877532 345666677777777777754 7777
Q ss_pred HHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 013323 204 KIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283 (445)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 283 (445)
..++...+.. |.|....+.++..+...|+.+++..++...
T Consensus 167 ~~~~~al~~~----------------------------------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 167 RDYRKALELD----------------------------------------PDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHH-----------------------------------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----------------------------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 7777766542 445667777788888888888877777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 284 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
.+.. +.|...+..+..+|...|+.++|..+|+...... +.|+.....+-. .+...|. ++|.++..+.
T Consensus 207 ~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~----~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 207 LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYAD----ALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHH----HHT---------------
T ss_pred HHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccc----cccccccccccccccccc
Confidence 6543 3455566777778888888888888888876642 225555555555 4677777 7777776654
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=4.6e-09 Score=111.75 Aligned_cols=351 Identities=11% Similarity=0.016 Sum_probs=218.9
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC--------CCC
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF--------LPD 110 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--------~p~ 110 (445)
.+...+..+-..+...|++++|.+.|++..+.. +.+...+..+...+. .++.++|..+++.+....- ...
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 345666677788888888888888888887643 223445555555553 4567888877766543210 011
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
...+..+...+...|++++|.+.|++..+.. | +...+..+...|.+.|++++|...|++..+..- .+...+..+..
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al 537 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGL 537 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 2346677888889999999999999988753 4 456777888899999999999999999887431 13333333333
Q ss_pred HHHccCCCchHHHHHHHHHHHHhcCCccccccc----cccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHH
Q 013323 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSG----NNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265 (445)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~ 265 (445)
.+...++. +.+...++.+.... ++...... .........................+. .+.+...+..+-.
T Consensus 538 ~l~~~~~~--~~Al~~l~~l~~~~-~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~p~~~~~~~~La~ 611 (1157)
T PRK11447 538 YLSGSDRD--RAALAHLNTLPRAQ-WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---QPPSTRIDLTLAD 611 (1157)
T ss_pred HHHhCCCH--HHHHHHHHhCCchh-cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---CCCCchHHHHHHH
Confidence 34445544 67777766654321 11100000 000000000000000000000011111 1455566777888
Q ss_pred HHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHhHhhcCChh
Q 013323 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-AELYATLVEGAMFGYTPK 344 (445)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~ 344 (445)
.+.+.|+.++|...++...+.. +.+...+..+...|...|+.++|.+.++...+. .|+ ...+..+-. .+...
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~----~~~~~ 684 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVAL----AWAAL 684 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHH----HHHhC
Confidence 8999999999999999988742 236778889999999999999999999987764 333 333333333 45677
Q ss_pred hH-HHHHHHHHHHHhCCCCCCc-----chhhHHHHHhhcccCCChhhHHHHHHHHH-HCCCCCC----HHHHHHHH
Q 013323 345 GM-QLAQDTLVNMNSRNIFLSP-----RMGSDLLLVAAGEKSGGYTTANYIWDLMQ-ARKITPS----LPAVEAYY 409 (445)
Q Consensus 345 g~-~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~g~~~~A~~~~~~m~-~~~~~p~----~~~~~~l~ 409 (445)
|+ ++|.++++++....-...+ ..+..+...+. ..|++++|...|++.. ..|+.|+ ..++..+.
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~--~~G~~~~A~~~y~~Al~~~~~~~~~p~~~~~~~~l~ 758 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA--QTGQPQQALETYKDAMVASGITPTRPQDNDTFTRLT 758 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHh
Confidence 87 9999999998875422112 23333344444 8999999999999886 3455432 33455444
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.26 E-value=6.3e-11 Score=105.88 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP-PAELYATLVE 335 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~ 335 (445)
..+..++..+.+.++++++..+++.+... ...++...|..+...+.+.|+.++|.+.|+...+. .| |......++.
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~ 188 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAW 188 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 34445555566666666666666665532 22345555666666666667777777666666654 23 3445555555
Q ss_pred hHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhc
Q 013323 336 GAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKD 414 (445)
Q Consensus 336 ~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 414 (445)
.+...|. +++.++++...+.. +.|+..+..+-.++. ..|+.++|...|++..+.. +.|+.+...+.+.+..
T Consensus 189 ----~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~--~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 189 ----LLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYL--QLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQ 260 (280)
T ss_dssp ----HHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHH--HHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-
T ss_pred ----HHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhc--ccccccccccccccccccc-cccccccccccccccc
Confidence 3455555 55666666655543 345555555555555 6667777777776655421 2355556666666666
Q ss_pred cCCCCCCCch
Q 013323 415 REVPADDPRL 424 (445)
Q Consensus 415 ~~~~~~a~~~ 424 (445)
.|..++|..+
T Consensus 261 ~g~~~~A~~~ 270 (280)
T PF13429_consen 261 AGRKDEALRL 270 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 7766666654
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.26 E-value=1.6e-08 Score=95.24 Aligned_cols=129 Identities=8% Similarity=-0.026 Sum_probs=82.8
Q ss_pred HHHHHHHH--hcCcHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 013323 45 NTVVTSLT--SQRRFFLLRDVYDDMMLDGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV--AVYNYLIS 119 (445)
Q Consensus 45 ~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~ 119 (445)
..+..+.. ..|+++.|.+.+....+. .|+... +-..-.+..+.|+.+.|.+.+++..+.. |+. .+--....
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~ 161 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHH
Confidence 33444433 357788888777665554 344333 3333455666788888888887776543 333 23333466
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
.+...|+++.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.++.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 6677788888888888877754 224566777778888888888888888888777643
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.26 E-value=1.1e-08 Score=95.86 Aligned_cols=283 Identities=9% Similarity=0.002 Sum_probs=204.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHH--HHHHHHHHcCChhhH
Q 013323 89 GSRLQDTFFFRDQMKANGFLPDVAV-YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV--CLLNACAAAGQLDPV 165 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~--~li~~~~~~g~~~~a 165 (445)
.|+++.|.+.+....+.. +++.. |-....+..+.|+++.|...+.++.+. .|+...+. .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766642 22333 333344557899999999999999874 45654433 335688899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhH
Q 013323 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245 (445)
Q Consensus 166 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
...++++.+.. +-+...+..+...|.+.|+. +.+..++..+.+....++-. ..
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw--~~a~~~l~~l~k~~~~~~~~-----------------~~------- 225 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW--SSLLDILPSMAKAHVGDEEH-----------------RA------- 225 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHcCCCCHHH-----------------HH-------
Confidence 99999998875 33577888888999998866 99999999998765321100 00
Q ss_pred HhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 013323 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325 (445)
Q Consensus 246 ~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 325 (445)
......|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|.+++++..+. .|
T Consensus 226 --------~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 226 --------MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred --------HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 000123444555555555667777777765432 3457778888999999999999999999988874 44
Q ss_pred CHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCc-chhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHH
Q 013323 326 PAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSP-RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLP 403 (445)
Q Consensus 326 ~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 403 (445)
+....... +....+. +++.+..+...+.. |+. .....+-..|. +.|++++|.+.|+...+ ..|+..
T Consensus 295 ~~~l~~l~------~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~--~~~~~~~A~~~le~al~--~~P~~~ 362 (398)
T PRK10747 295 DERLVLLI------PRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLM--KHGEWQEASLAFRAALK--QRPDAY 362 (398)
T ss_pred CHHHHHHH------hhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHh--cCCCHH
Confidence 55332222 3344566 88999999988765 444 44555666666 99999999999999986 469999
Q ss_pred HHHHHHhhhhccCCCCCCCchh
Q 013323 404 AVEAYYNGLKDREVPADDPRLV 425 (445)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~l 425 (445)
++..+...+.+.|..++|..+.
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999998886543
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.25 E-value=2.1e-08 Score=100.60 Aligned_cols=327 Identities=11% Similarity=0.003 Sum_probs=190.0
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGVQPTR--DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...++..... -.......-.+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 3468999999999999998753 664 244 7788888889999999999999831 112233333445678888999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHH
Q 013323 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~ 207 (445)
++|.++|+++.+... -|...+..++..+...++.++|++.++.+... .|+...+..+ ++...+......+...++
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l--ayL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL--SYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH--HHHHHhcchHHHHHHHHH
Confidence 999999999988642 24667778889999999999999999999886 4666666333 443322222245777777
Q ss_pred HHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Q 013323 208 LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDR 287 (445)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 287 (445)
.+.... +.+...+..++.++.+.|-...|.++...-.+ -
T Consensus 194 kll~~~----------------------------------------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~-~ 232 (822)
T PRK14574 194 EAVRLA----------------------------------------PTSEEVLKNHLEILQRNRIVEPALRLAKENPN-L 232 (822)
T ss_pred HHHHhC----------------------------------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc-c
Confidence 766543 33445555666666666666666555443111 0
Q ss_pred CCCCHHHH--HHHHHHHHhc---------CC---hhhHHHHHHHHHhC-CCCCCH-HH-HHHHHHhHhhcCChhhH-HHH
Q 013323 288 KSPDVYIV--MQNIRCYLHS---------GD---IDNGHKVFEDYICS-EKFPPA-EL-YATLVEGAMFGYTPKGM-QLA 349 (445)
Q Consensus 288 ~~p~~~~~--~~li~~~~~~---------g~---~~~a~~~~~~m~~~-~~~p~~-~~-~~~li~~~~~~~~~~g~-~~a 349 (445)
+.+...-. ...+.-.++. .+ .+.|+.-++.+... +-.|.. .. -.+.++-+. ++...|+ .++
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~-aL~~r~r~~~v 311 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG-ALLVRHQTADL 311 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH-HHHHhhhHHHH
Confidence 11111000 0001111111 11 23344444444432 222222 11 222333222 3444444 666
Q ss_pred HHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCC-----CCCCHHHHHHHHhhhhccCCCCCCCch
Q 013323 350 QDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK-----ITPSLPAVEAYYNGLKDREVPADDPRL 424 (445)
Q Consensus 350 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~ 424 (445)
.+.++.|...+.+....+-.++..+|. ..+.+++|..+|++..... ..++......|+-++.+.+..++|..+
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl--~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYI--DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHH--hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 666666666654322334445555555 6666666666666665321 122333345566666666666666666
Q ss_pred hhhhh
Q 013323 425 VVVSR 429 (445)
Q Consensus 425 l~~~~ 429 (445)
+....
T Consensus 390 l~~~~ 394 (822)
T PRK14574 390 AVNYS 394 (822)
T ss_pred HHHHH
Confidence 55543
No 32
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.25 E-value=3.2e-09 Score=98.00 Aligned_cols=296 Identities=12% Similarity=0.054 Sum_probs=167.8
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
.-..+|..+-..+-..|++++|+.+++.+.+. +| ....|.-+-.++...|+.+.|.+.|.+..+.+ |+.....+-
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence 34677888999999999999999999999885 35 46678889999999999999999999888754 665544332
Q ss_pred HH-HHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc
Q 013323 118 IS-VCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNK 194 (445)
Q Consensus 118 l~-~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 194 (445)
+. ..-..|++++|..-|.+..+. .|. .+.|+.+-..+-..|+...|..-|++..+- .|+ ...|-.+=..|...
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA 265 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH
Confidence 22 222356677776666665543 233 345666666666677777777777666653 333 23344444444444
Q ss_pred CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHH
Q 013323 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274 (445)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 274 (445)
+.. +.|...+........-.........+.+...|...-++..-.. .. ...+.=...|+.|-.++-..|++.
T Consensus 266 ~~~--d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr---al---~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 266 RIF--DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR---AL---ELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred hcc--hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH---HH---hcCCCchHHHhHHHHHHHhccchH
Confidence 433 4455554443322111111111111111111111111000000 00 000222346777777777778888
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHhHhhcCChhhH-HHHHH
Q 013323 275 AMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-AELYATLVEGAMFGYTPKGM-QLAQD 351 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~g~-~~a~~ 351 (445)
+|...++..... .|+ .-..+.|-..|...|.+++|..+|....+- .|. ...++.|-. -|.++|. ++|..
T Consensus 338 ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~----i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 338 EAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLAS----IYKQQGNLDDAIM 409 (966)
T ss_pred HHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHH----HHHhcccHHHHHH
Confidence 887777766552 343 335666777777777777777777665543 222 122333322 3455555 66666
Q ss_pred HHHHHHh
Q 013323 352 TLVNMNS 358 (445)
Q Consensus 352 ~~~~m~~ 358 (445)
.+++..+
T Consensus 410 ~Ykealr 416 (966)
T KOG4626|consen 410 CYKEALR 416 (966)
T ss_pred HHHHHHh
Confidence 6665553
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=2.6e-08 Score=93.90 Aligned_cols=292 Identities=8% Similarity=-0.040 Sum_probs=197.8
Q ss_pred HHHHHHHH--hcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH--HHHHHH
Q 013323 79 FHSLIVGT--MKGSRLQDTFFFRDQMKANGFLPDVA-VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ--TYVCLL 153 (445)
Q Consensus 79 ~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~y~~li 153 (445)
+..+..+. ...|+++.|.+.+....+.. |+.. .+-..-.+..+.|+.+.|.+++.+..+.. |+.. .--...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 34444443 35799999999998877754 5533 33344567778899999999999987643 4442 333457
Q ss_pred HHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccc
Q 013323 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVS 233 (445)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (445)
..+...|+++.|...++.+.+.. +-+...+..+...+...|+. +.+.+.+..+.+.+..
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~--~~a~~~l~~l~k~~~~------------------ 219 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW--QALDDIIDNMAKAGLF------------------ 219 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHcCCC------------------
Confidence 88888999999999999999975 22567788888899998866 8899999988876321
Q ss_pred hhhhcchhhhhHHhhhcCcccCchhHHH----HHHHHHHhcccHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcC
Q 013323 234 KEELYNLPTAEYVHRRGGFLSRLLTVYH----VAFHACAELKDVQAMETLLEMLKKDR---KSPDVYIVMQNIRCYLHSG 306 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g 306 (445)
+...+. ..-......+..+.+...+..+.+.. .+.+...+..+...+...|
T Consensus 220 ----------------------~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 220 ----------------------DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 111111 01111122222222233444333321 1237788888999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHH--HHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcc---hhhHHHHHhhcccC
Q 013323 307 DIDNGHKVFEDYICSEKFPPAEL--YATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPR---MGSDLLLVAAGEKS 380 (445)
Q Consensus 307 ~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~ 380 (445)
+.+.|.+++++..+.. ||... +..+... .....++ +.+.+.++...+.. |+.. ...++-..+. +.
T Consensus 278 ~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~---~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~--~~ 348 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKL--GDDRAISLPLCLPI---PRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLM--KH 348 (409)
T ss_pred ChHHHHHHHHHHHhhC--CCcccchhHHHHHh---hhcCCCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHH--Hc
Confidence 9999999999988863 33331 1122211 2233455 78888888877653 4444 3334445555 99
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhh
Q 013323 381 GGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVV 426 (445)
Q Consensus 381 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~ 426 (445)
|++++|.+.|+........|+.+++..+...+.+.|..++|.++..
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999976666678999999999999999999988876554
No 34
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=4.6e-07 Score=79.85 Aligned_cols=290 Identities=13% Similarity=0.040 Sum_probs=163.8
Q ss_pred HHHHHHh--cCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 013323 47 VVTSLTS--QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124 (445)
Q Consensus 47 li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 124 (445)
+..+..+ .|+|..|..+..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+.-+..-.++..++-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444433 578888888777766655433 3345555566677788888888888877753346666666777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCC
Q 013323 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK-------FCYAGLITAHTNKIPR 197 (445)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~ 197 (445)
|+++.|..-+++..+.+- .+........++|.+.|++..+..++..|.+.|+--|. .+|..+++-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 888888777777776542 35667788888888888888888888888887754332 2333333333222111
Q ss_pred chHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHH
Q 013323 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 277 (445)
+.....++...+. .+.++..-.+++.-+.+.|+.++|.
T Consensus 246 --~gL~~~W~~~pr~----------------------------------------lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 246 --EGLKTWWKNQPRK----------------------------------------LRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred --hHHHHHHHhccHH----------------------------------------hhcChhHHHHHHHHHHHcCChHHHH
Confidence 2212222222111 1233444555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHH
Q 013323 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVN 355 (445)
Q Consensus 278 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~ 355 (445)
++..+-.+.+..|+..+ .-.+.+-++.+.-.+..+.-.+. +-.| ..+.+|=. -|.+++. .+|.+.|+.
T Consensus 284 ~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~----L~~k~~~w~kA~~~lea 353 (400)
T COG3071 284 EIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGR----LALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHH----HHHHhhHHHHHHHHHHH
Confidence 66666555555444111 12334455555555544444333 3333 33333322 2345554 666666664
Q ss_pred HHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 356 MNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 356 m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
..+. .|+..+|..+-.++. +.|+.++|..++++-.
T Consensus 354 Al~~--~~s~~~~~~la~~~~--~~g~~~~A~~~r~e~L 388 (400)
T COG3071 354 ALKL--RPSASDYAELADALD--QLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhc--CCChhhHHHHHHHHH--HcCChHHHHHHHHHHH
Confidence 4443 356666666655555 6666666666665544
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.8e-07 Score=78.91 Aligned_cols=292 Identities=14% Similarity=0.073 Sum_probs=197.3
Q ss_pred hcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCC
Q 013323 53 SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV------AVYNYLISVCGKCKN 126 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~ 126 (445)
-+.+.++|.++|-+|.+.. +-+..+--+|-+.+.+.|..+.|..+.+.+.++ ||. ...-.|-.-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999998742 123334556778899999999999999999985 543 234456667888999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHH----HHHHHHHHHccCCCchHHH
Q 013323 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC----YAGLITAHTNKIPRADDTA 202 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~~~~~~~~a 202 (445)
+|.|+++|..+.+.|. --....-.++..|-...+|++|.++-+++.+.|-++...- |--+-..+.-.. +.+.|
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~--~~d~A 199 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS--DVDRA 199 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--hHHHH
Confidence 9999999999987542 2345677899999999999999999999988764433221 111211111111 23555
Q ss_pred HHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 013323 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 282 (445)
...+..--+.. +..+..--.+-......|+++.|.+.++.
T Consensus 200 ~~~l~kAlqa~----------------------------------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 200 RELLKKALQAD----------------------------------------KKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred HHHHHHHHhhC----------------------------------------ccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 55554433221 11222222344557778999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCC
Q 013323 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIF 362 (445)
Q Consensus 283 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~ 362 (445)
..+.+..--..+...|..+|...|+.++....+..+.+....++.. ..+-+- .....|.+.|...+.+-..+ +
T Consensus 240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~l---ie~~~G~~~Aq~~l~~Ql~r--~ 312 (389)
T COG2956 240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE--LMLADL---IELQEGIDAAQAYLTRQLRR--K 312 (389)
T ss_pred HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHH---HHHhhChHHHHHHHHHHHhh--C
Confidence 9887655566788999999999999999999999988873333332 222221 12566776666666555554 4
Q ss_pred CCcchhhHHHHHhh-cccCCChhhHHHHHHHHHHCCC
Q 013323 363 LSPRMGSDLLLVAA-GEKSGGYTTANYIWDLMQARKI 398 (445)
Q Consensus 363 p~~~~~~~ll~~~~-~~~~g~~~~A~~~~~~m~~~~~ 398 (445)
|+...+..++..-. -...|.+.+....++.|....+
T Consensus 313 Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 313 PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 88888888886443 1123456667777888875443
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.10 E-value=1.6e-07 Score=96.38 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=178.7
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+-.++.. ++.++|...+.+-... .|+......+..++...|++++|...|+.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56667777666666 8888899977777654 376554444445556899999999999998664 355566777778
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCch
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 199 (445)
.+.+.|++++|..+|++....+ +++...+..+.....+.|++++|...+++..+. .|+...+..+-..+.+.|+.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~-- 625 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV-- 625 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH--
Confidence 8899999999999999998764 223333434444455669999999999999875 46788888888889999877
Q ss_pred HHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHH
Q 013323 200 DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279 (445)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 279 (445)
+.|...++...... +.+...++.+-.++...|+.++|...
T Consensus 626 deA~~~l~~AL~l~----------------------------------------Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 626 PAAVSDLRAALELE----------------------------------------PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred HHHHHHHHHHHHhC----------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88999998877642 55666778888889999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 280 LEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 280 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
++...+. .| +...+..+-.++...|++++|...|+...+.
T Consensus 666 l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9988763 45 5667888999999999999999999998875
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=1.6e-07 Score=81.26 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444555555555555555555555432 1234455555555555566666666555555432 12334455555555
Q ss_pred HHcCChhhHHHHHHHHHH
Q 013323 157 AAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~ 174 (445)
...|++++|...+++...
T Consensus 110 ~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHcccHHHHHHHHHHHHh
Confidence 555666666655555544
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.09 E-value=4e-07 Score=93.56 Aligned_cols=227 Identities=10% Similarity=0.026 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
+...|..+-.++.. ++.++|...|.+-... .|+......+...+...|++++|...|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45566666666665 6777777766655543 355443333344445677788887777776543 334344444455
Q ss_pred HHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHh
Q 013323 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269 (445)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~ 269 (445)
++.+.|+. +.|...++...+.. +.+...+..+.....+
T Consensus 551 all~~Gd~--~eA~~~l~qAL~l~----------------------------------------P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 551 TAQAAGNG--AARDRWLQQAEQRG----------------------------------------LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHCCCH--HHHHHHHHHHHhcC----------------------------------------CccHHHHHHHHHHHHh
Confidence 55666654 66777776655431 1222223233333445
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHhHhhcCChhhH-H
Q 013323 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-AELYATLVEGAMFGYTPKGM-Q 347 (445)
Q Consensus 270 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~g~-~ 347 (445)
.|++++|...++...+ ..|+...|..+-..+.+.|+.++|...|+..... .|+ ...++.+-. .+...|. +
T Consensus 589 ~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~----aL~~~G~~e 660 (987)
T PRK09782 589 PGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGY----ALWDSGDIA 660 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH----HHHHCCCHH
Confidence 5788888877777665 3456667777777778888888888888777665 233 333333333 3455666 7
Q ss_pred HHHHHHHHHHhCCCCCC-cchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 348 LAQDTLVNMNSRNIFLS-PRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 348 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
+|.+.+++..+.. |+ +..+..+-.++. ..|++++|...|++..+
T Consensus 661 eAi~~l~~AL~l~--P~~~~a~~nLA~al~--~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 661 QSREMLERAHKGL--PDDPALIRQLAYVNQ--RLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHh
Confidence 7877777777653 33 334444444444 77888888887777764
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.07 E-value=3.2e-07 Score=80.85 Aligned_cols=285 Identities=12% Similarity=0.056 Sum_probs=218.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHH
Q 013323 89 GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~ 168 (445)
.|++..|++....-.+.+-. ....|-.-..+.-+.|+.+.+-.++.+..+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999998887743 35566777788888999999999999998863356677788888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhh
Q 013323 169 VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248 (445)
Q Consensus 169 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (445)
.+++.+.+- -.+........+|.+.|.. .....+...+.+.+.+++...
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~--~~ll~~l~~L~ka~~l~~~e~---------------------------- 224 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAW--QALLAILPKLRKAGLLSDEEA---------------------------- 224 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccH--HHHHHHHHHHHHccCCChHHH----------------------------
Confidence 999988753 3678888999999999976 888888888888765433110
Q ss_pred hcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 013323 249 RGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328 (445)
Q Consensus 249 ~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 328 (445)
......+|..++.-+...+..+.....|+..-.+ .+-+...-.+++.-+.++|+.++|.++..+..+++..|+
T Consensus 225 ----~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 225 ----ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred ----HHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 0223357888888888888888877777765443 445666777888999999999999999999999887766
Q ss_pred HHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEA 407 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 407 (445)
...++. +.+-++ ..-.+..++-.+.. +-++..+.++=..|. +.+.|.+|...|+.-. ...|+.++|+-
T Consensus 298 -L~~~~~-----~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~--k~~~w~kA~~~leaAl--~~~~s~~~~~~ 366 (400)
T COG3071 298 -LCRLIP-----RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLAL--KNKLWGKASEALEAAL--KLRPSASDYAE 366 (400)
T ss_pred -HHHHHh-----hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHH--HhhHHHHHHHHHHHHH--hcCCChhhHHH
Confidence 334443 455555 55566665554432 123455666666666 9999999999999554 56799999999
Q ss_pred HHhhhhccCCCCCCCc
Q 013323 408 YYNGLKDREVPADDPR 423 (445)
Q Consensus 408 l~~~~~~~~~~~~a~~ 423 (445)
+-+++.+.|.+.+|..
T Consensus 367 la~~~~~~g~~~~A~~ 382 (400)
T COG3071 367 LADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHcCChHHHHH
Confidence 9999999999987765
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=8.4e-08 Score=89.66 Aligned_cols=282 Identities=10% Similarity=-0.018 Sum_probs=193.7
Q ss_pred cHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCC-HHHHH
Q 013323 56 RFFLLRDVYDDMMLDGVQPTR-DLFHSLIVGTMKGSRLQDTFFFRDQMKANG--FLPDVAVYNYLISVCGKCKN-SDQAI 131 (445)
Q Consensus 56 ~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~-~~~a~ 131 (445)
+..+|...|....++ + +|+ .....+-.+|...+++++|+.+|+.+.+.. ..-+..+|.+.+-.+-+.=. --.|.
T Consensus 334 ~~~~A~~~~~klp~h-~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-H-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh-c-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 567888888885543 3 343 445566788999999999999999998753 12367788887765432111 11233
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
.+.+.++ -.+.+|.++-++|.-.++.+.|++.|++..+- .| ..++|+.+=+-+....+. |.|...|..-.
T Consensus 412 ~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~--d~a~~~fr~Al 482 (638)
T KOG1126|consen 412 DLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEF--DKAMKSFRKAL 482 (638)
T ss_pred HHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHH--HhHHHHHHhhh
Confidence 3333332 35789999999999999999999999998874 34 456665554444443333 56666665433
Q ss_pred HhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHH---HHHHHHhcccHHHHHHHHHHHHhCC
Q 013323 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHV---AFHACAELKDVQAMETLLEMLKKDR 287 (445)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~ 287 (445)
..|...||+ +--.|.+.++++.|+-.|+...+
T Consensus 483 -------------------------------------------~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-- 517 (638)
T KOG1126|consen 483 -------------------------------------------GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-- 517 (638)
T ss_pred -------------------------------------------cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--
Confidence 445556665 55568999999999999988766
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCc
Q 013323 288 KSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSP 365 (445)
Q Consensus 288 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~ 365 (445)
+.| +......+...+-+.|+.|+|+++|++.....-+-...-|...-- +...++ ++|+..++++++. .|+.
T Consensus 518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i-----l~~~~~~~eal~~LEeLk~~--vP~e 590 (638)
T KOG1126|consen 518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI-----LFSLGRYVEALQELEELKEL--VPQE 590 (638)
T ss_pred CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH-----HHhhcchHHHHHHHHHHHHh--Ccch
Confidence 556 666777788888999999999999999887744323333332221 344455 9999999999874 5665
Q ss_pred ch-hhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCH
Q 013323 366 RM-GSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402 (445)
Q Consensus 366 ~~-~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 402 (445)
.+ |..+-..|- +.|+.+.|..-|--+.+.+-++..
T Consensus 591 s~v~~llgki~k--~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 591 SSVFALLGKIYK--RLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHH--HHccchHHHHhhHHHhcCCCccch
Confidence 54 444445555 899999998888888766555544
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.5e-06 Score=78.03 Aligned_cols=311 Identities=9% Similarity=0.029 Sum_probs=206.1
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCC
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF--LPDVAVYNYLISVCGKCKN 126 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~ 126 (445)
.++-.....+++.+-.+.....|+.-+...-+..-.+.-...|++.|+.+|+++.+... --|..+|+.++-.--...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s- 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH-
Confidence 45556667777877777777777744433333333344456789999999999988741 126778888775433222
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCchHHHHHH
Q 013323 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDTATKI 205 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~ 205 (445)
.+.++.+-...--+-.+.|..++-+-|+-.++.++|...|+...+-+ |. ...|+.+=+-|...... .+|..-
T Consensus 314 ---kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt--~AAi~s 386 (559)
T KOG1155|consen 314 ---KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNT--HAAIES 386 (559)
T ss_pred ---HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhccc--HHHHHH
Confidence 22222222211113456788888999999999999999999998864 44 34444444556554433 555555
Q ss_pred HHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013323 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKK 285 (445)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 285 (445)
+....+. .+.|-..|-.+-++|.-.+.+.-|.-.|++...
T Consensus 387 YRrAvdi----------------------------------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 387 YRRAVDI----------------------------------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHhc----------------------------------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 5554432 267778899999999999999999999988765
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHh----C
Q 013323 286 DRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNS----R 359 (445)
Q Consensus 286 ~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~----~ 359 (445)
++| |...|.+|-.+|.+.++.++|...|......|-. +...+..|-+ .|-+-++ ++|...|++..+ .
T Consensus 427 --~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~Lak----Lye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 427 --LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAK----LYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred --cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 556 7889999999999999999999999998877533 4566777766 5677777 888888776654 3
Q ss_pred CCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccC
Q 013323 360 NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDRE 416 (445)
Q Consensus 360 ~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 416 (445)
|..-+......+..+-.+.+.+++++|.....+... | .|..+-=++|++.+.+..
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETECEEAKALLREIRKIQ 554 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchHHHHHHHHHHHHHhc
Confidence 432222222222222224588999999766554443 3 666666677777665543
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.04 E-value=3.4e-07 Score=79.19 Aligned_cols=202 Identities=12% Similarity=0.009 Sum_probs=150.9
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 446778888899999999999999999987753 2346678888889999999999999999998865 34567888889
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
..+...|++++|.+.|++...... ..+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999987532 2235567778888999999999999999988753 22345566666666666655
Q ss_pred chHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHH
Q 013323 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 277 (445)
+.+...++...... +.+...+..+...+...|+.+.|.
T Consensus 186 --~~A~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 186 --KDARAYLERYQQTY----------------------------------------NQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred --HHHHHHHHHHHHhC----------------------------------------CCCHHHHHHHHHHHHHHhhHHHHH
Confidence 66776666654431 233344555666666677777777
Q ss_pred HHHHHHHh
Q 013323 278 TLLEMLKK 285 (445)
Q Consensus 278 ~~~~~m~~ 285 (445)
.+.+.+..
T Consensus 224 ~~~~~~~~ 231 (234)
T TIGR02521 224 RYGAQLQK 231 (234)
T ss_pred HHHHHHHh
Confidence 76665543
No 43
>PF12854 PPR_1: PPR repeat
Probab=98.97 E-value=7.8e-10 Score=62.69 Aligned_cols=32 Identities=44% Similarity=0.664 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 013323 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEM 137 (445)
Q Consensus 106 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 137 (445)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=3.2e-06 Score=75.75 Aligned_cols=145 Identities=17% Similarity=0.080 Sum_probs=101.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcC
Q 013323 263 AFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGY 341 (445)
Q Consensus 263 li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 341 (445)
+...|-...+...|.+++... ..+.| |....+.|-..|-+.|+-..|++.+-+--+ -++-+..|...|-. -|
T Consensus 564 ianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~a----yy 636 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAA----YY 636 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHH----HH
Confidence 333344444444555444332 23444 677888888999999999988887654222 23446777777765 45
Q ss_pred ChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 342 TPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 342 ~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
..... +++...|++.- -++|+.+-|..++..|. .+.|++++|..+|+.. .+.++-|......|++-+...|..
T Consensus 637 idtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~-rrsgnyqka~d~yk~~-hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCF-RRSGNYQKAFDLYKDI-HRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHH-HhcccHHHHHHHHHHH-HHhCccchHHHHHHHHHhccccch
Confidence 66666 88998888754 36899999999998884 7889999999999988 456777888888888776666644
No 45
>PF12854 PPR_1: PPR repeat
Probab=98.95 E-value=9.8e-10 Score=62.29 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 013323 286 DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319 (445)
Q Consensus 286 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (445)
.|+.||..|||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788888899999999999999999988888873
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=98.95 E-value=2.6e-06 Score=83.59 Aligned_cols=81 Identities=7% Similarity=-0.062 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHH
Q 013323 92 LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 171 (445)
+++|...+++..+.+ +-+...+..+-..+...|++++|...|++..+.+ +.+...|..+-..+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444444444444432 1133344444444444444444444444444332 11233344444444444444444444444
Q ss_pred HHH
Q 013323 172 MTA 174 (445)
Q Consensus 172 m~~ 174 (445)
..+
T Consensus 398 Al~ 400 (553)
T PRK12370 398 CLK 400 (553)
T ss_pred HHh
Confidence 444
No 47
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.94 E-value=3.3e-07 Score=85.11 Aligned_cols=351 Identities=13% Similarity=0.056 Sum_probs=182.4
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 123 (445)
-..|.+-..+.|++.+|++--...-+.+ ..+....-.+-.++.+..+.+....--....+. .+.-..+|..+-+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 3456677778889988887655554432 122223333334455555555544333332222 12356789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCCchHH
Q 013323 124 CKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-KIPRADDT 201 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~~~ 201 (445)
.|++++|+.+|+.+.+. +| ....|..+-.++...|+.+.|.+.|.+..+- .|+.....+-+.-+.+ .|+. .+
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl--~e 202 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL--EE 202 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc--ch
Confidence 99999999999999885 34 4778999999999999999999999888874 4666554443333322 3443 44
Q ss_pred HHHHH-HHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCc-hhHHHHHHHHHHhcccHHHHHHH
Q 013323 202 ATKII-ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL-LTVYHVAFHACAELKDVQAMETL 279 (445)
Q Consensus 202 a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 279 (445)
+...+ +.++....+.- .. +...-.+. ...+++.-..... +.-.+.|+ ...|-.+-..|...+.++.|..-
T Consensus 203 a~~cYlkAi~~qp~fAi-aw--snLg~~f~--~~Gei~~aiq~y~---eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAI-AW--SNLGCVFN--AQGEIWLAIQHYE---EAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hHHHHHHHHhhCCceee-ee--hhcchHHh--hcchHHHHHHHHH---HhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 44444 33333321110 00 00000000 0000110000000 00000111 12333344444444444444444
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 280 LEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP-PAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 280 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
+..... .+|+ ...|..+-..|-..|.+|-|...|++..+. .| =...|+.|-. ++...|. .+|...+.+.
T Consensus 275 Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~Nlan----ALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 275 YLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLAN----ALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHH----HHHhccchHHHHHHHHHH
Confidence 443322 3443 334555555555666666666666655544 12 2345555555 4455565 6666666665
Q ss_pred HhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCH-HHHHHHHhhhhccCCCCCCCc
Q 013323 357 NSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL-PAVEAYYNGLKDREVPADDPR 423 (445)
Q Consensus 357 ~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 423 (445)
..... -.+...+.|-..+. ..|.+++|..+|..-.+ +.|.- ...+-|-.-|...|..++|+.
T Consensus 347 L~l~p-~hadam~NLgni~~--E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 347 LRLCP-NHADAMNNLGNIYR--EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred HHhCC-ccHHHHHHHHHHHH--HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 55431 12234444555555 66666666666655442 33332 234445555566666666554
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.90 E-value=7.8e-06 Score=79.39 Aligned_cols=356 Identities=14% Similarity=0.064 Sum_probs=198.3
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 129 (445)
.+.-.|++++|.+++.+..+.. +-+...|-.|-..|-+.|+.+.+...+=-.-..+ +-|...|-.+-....+.|.++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3333488888888888877653 2355667777778888887777766553333322 3456777777777777777777
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHH----HHHHHHHHccCCCchHHHHHH
Q 013323 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY----AGLITAHTNKIPRADDTATKI 205 (445)
Q Consensus 130 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~~~~~~~~a~~~ 205 (445)
|.-.|.+..+.. +++...+--=+..|-+.|+...|...|.++....-+.|..-+ ..+++.+...++. +.|.+.
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~--e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER--ERAAKA 302 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH--HHHHHH
Confidence 777777776653 234444445556667777777777777777664321122222 2223334444333 444444
Q ss_pred HHHHHHh-cCCccccccccccchhhcc-cchhhhcchhhhhH----------------------HhhhcCcccCchhHHH
Q 013323 206 IELVEQS-KGWSSVETSGNNAENEMMG-VSKEELYNLPTAEY----------------------VHRRGGFLSRLLTVYH 261 (445)
Q Consensus 206 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~g~~~~~~~~~~ 261 (445)
++.-... ...........++...+.. ....+...+..... ....+....++..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 4332221 1111111111111111000 00000000000000 000000112333331
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhh
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF 339 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 339 (445)
-++-++.+.+..+...-+..-+.+..+.| +...|.-+..+|...|++..|+++|..+......-+...|-.+-.|
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c--- 458 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC--- 458 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH---
Confidence 23334455555566665666666555444 5568889999999999999999999999988544467777777774
Q ss_pred cCChhhH-HHHHHHHHHHHhCCCCCCc-chhhHHHHHhhcccCCChhhHHHHHHHHHH--------CCCCCCHHHHHHHH
Q 013323 340 GYTPKGM-QLAQDTLVNMNSRNIFLSP-RMGSDLLLVAAGEKSGGYTTANYIWDLMQA--------RKITPSLPAVEAYY 409 (445)
Q Consensus 340 ~~~~~g~-~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~ 409 (445)
|...|. +.|.+.++...... |+. ..-..|-..+- +.|+.|+|.+++..|.. .++.|.....-...
T Consensus 459 -~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~--~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 459 -YMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQ--QLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred -HHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHH--hcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 566777 99999999988753 332 22233334344 89999999999999652 23445554443344
Q ss_pred hhhhccCCCC
Q 013323 410 NGLKDREVPA 419 (445)
Q Consensus 410 ~~~~~~~~~~ 419 (445)
+-+.+.|+.+
T Consensus 534 d~l~~~gk~E 543 (895)
T KOG2076|consen 534 DILFQVGKRE 543 (895)
T ss_pred HHHHHhhhHH
Confidence 4445555443
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=98.88 E-value=2.3e-06 Score=84.00 Aligned_cols=266 Identities=10% Similarity=-0.031 Sum_probs=176.6
Q ss_pred CCHHHHHHHHHHHhc-----CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------ccCCHHHHHHHHHHHH
Q 013323 74 PTRDLFHSLIVGTMK-----GSRLQDTFFFRDQMKANGFLPD-VAVYNYLISVCG---------KCKNSDQAIRIFEEMK 138 (445)
Q Consensus 74 p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 138 (445)
.+...|...+.+-.. .+++++|...|++..+.. |+ ...|..+-.++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 355667777766422 245789999999998754 54 445555554443 2345889999999998
Q ss_pred hCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccc
Q 013323 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218 (445)
Q Consensus 139 ~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 218 (445)
+.+ +-+...|..+-..+...|++++|...|++..+.+ +.+...+..+-..+...|+. +.|...++...+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~--~eAi~~~~~Al~l~----- 402 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQL--EEALQTINECLKLD----- 402 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhcC-----
Confidence 764 2357788888888899999999999999998864 22456677777788888876 88999998877642
Q ss_pred cccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 013323 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQ 297 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 297 (445)
+.+...+..+...+...|++++|...+++..+.. .| +...+..
T Consensus 403 -----------------------------------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~ 446 (553)
T PRK12370 403 -----------------------------------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSM 446 (553)
T ss_pred -----------------------------------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHH
Confidence 2222233334445666899999999998876543 34 3445666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhHHHHHHHHHHHHhCC-CCCCcchhhHHHHHhh
Q 013323 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRN-IFLSPRMGSDLLLVAA 376 (445)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 376 (445)
+-.++...|+.++|.+.+..+... .|+.......+.. .|...| +.+...++.+.+.. -.|...-+..++ +.
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~---~~~~~g-~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~ 518 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYA---EYCQNS-ERALPTIREFLESEQRIDNNPGLLPLV--LV 518 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHH---HHhccH-HHHHHHHHHHHHHhhHhhcCchHHHHH--HH
Confidence 778888999999999999887654 3444433333332 345555 46666666655432 223333333333 33
Q ss_pred cccCCChhhHHHHHHHHHHCC
Q 013323 377 GEKSGGYTTANYIWDLMQARK 397 (445)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~~ 397 (445)
-.|+-+.+... +++.+.+
T Consensus 519 --~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 519 --AHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHhhhHHHHHH-HHhhccc
Confidence 57777777555 8887654
No 50
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=8.1e-06 Score=77.84 Aligned_cols=303 Identities=11% Similarity=0.071 Sum_probs=193.1
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcc--
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY-NYLISVCGKC-- 124 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~-- 124 (445)
..+...|++++|++.++.-.+ .-+|..+ +...-..+.+.|+.++|..+|..+.+.+ |+-..| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 455788999999999977433 3356555 5566778899999999999999999987 665555 4455544222
Q ss_pred ---CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchH
Q 013323 125 ---KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL-DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200 (445)
Q Consensus 125 ---g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 200 (445)
.+.+....+|+++... -|.......+.-.+.....+ ..+...+..+..+|+++ +|+.+-.-|....+. +
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~--~ 160 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA--A 160 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH--H
Confidence 2578888999988764 25444444443333332333 33556667777888653 344444444433222 4
Q ss_pred HHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHH--HHHHHHHHhcccHHHHHH
Q 013323 201 TATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY--HVAFHACAELKDVQAMET 278 (445)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~li~~~~~~g~~~~a~~ 278 (445)
....++..+.............. ....-+|....| ..+-..|-..|++++|.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~-------------------------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGD-------------------------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCcc-------------------------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44455544433211110000000 000114444334 556677889999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 279 LLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 279 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
..+...+. .|+ +..|..-...+-+.|++++|.+.++..+..... |-..-+...+ .+.++|. ++|.+++...
T Consensus 216 ~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK----y~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 216 YIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAK----YLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHH----HHHHCCCHHHHHHHHHhh
Confidence 99988774 565 557888888999999999999999999887443 4555555555 4567788 9999999999
Q ss_pred HhCCCCCCcchh------hHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 357 NSRNIFLSPRMG------SDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 357 ~~~~~~p~~~~~------~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
.+.+..|....+ --+=.+-++.+.|++..|.+.|....
T Consensus 289 tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 289 TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 887764433222 11212222559999999988776665
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=1.7e-05 Score=68.22 Aligned_cols=265 Identities=14% Similarity=0.117 Sum_probs=183.9
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHH------HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL------FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+|=+.|-+.|.++.|+++...+.+. ||... .-.|-.-|...|-++.|+++|..+.+.|- --.....-|+.
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~ 149 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLN 149 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHH
Confidence 4557788899999999999998875 54322 22333446778999999999999988652 34567788999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcc
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPN----GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNK 194 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~ 194 (445)
.|-...+|++|.++-+++...|-.+. ...|.-+-..+.-..+++.|...+.+..+.. |+.+--+.++ +.....
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhc
Confidence 99999999999999999987654443 3457777777778889999999999888763 3333333333 334455
Q ss_pred CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHH
Q 013323 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274 (445)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 274 (445)
|+. +.+.+.++.+.+.+. .--..+...+..+|...|+.+
T Consensus 228 g~y--~~AV~~~e~v~eQn~---------------------------------------~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 228 GDY--QKAVEALERVLEQNP---------------------------------------EYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred cch--HHHHHHHHHHHHhCh---------------------------------------HHHHHHHHHHHHHHHHhCCHH
Confidence 655 888888888776531 112345778999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHH
Q 013323 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTL 353 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~ 353 (445)
+....+..+.+....++.. ..+-..-....-.+.|...+.+-... +|+...+..||+.-+ +-+..|. .+.+.++
T Consensus 267 ~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l-~daeeg~~k~sL~~l 341 (389)
T COG2956 267 EGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL-ADAEEGRAKESLDLL 341 (389)
T ss_pred HHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh-ccccccchhhhHHHH
Confidence 9999999887754333332 22222223334455565555544443 699999999998433 3344555 6677778
Q ss_pred HHHHhCCCC
Q 013323 354 VNMNSRNIF 362 (445)
Q Consensus 354 ~~m~~~~~~ 362 (445)
+.|....++
T Consensus 342 r~mvge~l~ 350 (389)
T COG2956 342 RDMVGEQLR 350 (389)
T ss_pred HHHHHHHHh
Confidence 888765544
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=3.2e-06 Score=79.36 Aligned_cols=264 Identities=11% Similarity=0.021 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhcCCChhHHHHHHHH-HHHCCCCCCHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDG--VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ-MKANGFLPDVAVYNYLI 118 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~ll 118 (445)
+...-+=.+|...+++++|..+|+..++.. ..-+...|.+.+.=+-+ +-++..+.+ +.+.. +-.+.+|-++-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhc
Confidence 344455578888999999999999998742 11256678887765432 222222222 22222 34678999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH---HHHHcc
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI---TAHTNK 194 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~ 194 (445)
++|.-.++.+.|++.|++..+. .| ...+|+.+-.-+.....+|+|...|+.... .|+..|+++- ..|.+.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheecc
Confidence 9999999999999999999874 45 678999998889999999999999987765 5778888765 346677
Q ss_pred CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHH
Q 013323 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274 (445)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 274 (445)
++. +.|+-.|+...... +.+.+....+...+-+.|+.+
T Consensus 503 ek~--e~Ae~~fqkA~~IN----------------------------------------P~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 503 EKL--EFAEFHFQKAVEIN----------------------------------------PSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred chh--hHHHHHHHhhhcCC----------------------------------------ccchhHHhhhhHHHHHhhhhh
Confidence 666 77777777655432 566667777777888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHH
Q 013323 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTL 353 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~ 353 (445)
+|.+++++.....-+ |...--.-...+...++.++|++.++++++- .|+..+...|+.- .|.+-|. +.|+.-|
T Consensus 541 ~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgk---i~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGK---IYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHH---HHHHHccchHHHHhh
Confidence 999999987654322 3333333466677889999999999999874 5666555555542 5778887 9999999
Q ss_pred HHHHhCCCCCC
Q 013323 354 VNMNSRNIFLS 364 (445)
Q Consensus 354 ~~m~~~~~~p~ 364 (445)
..+.+.+-++.
T Consensus 615 ~~A~~ldpkg~ 625 (638)
T KOG1126|consen 615 SWALDLDPKGA 625 (638)
T ss_pred HHHhcCCCccc
Confidence 88887664433
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=9.2e-06 Score=72.90 Aligned_cols=276 Identities=10% Similarity=0.002 Sum_probs=179.7
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI--VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 126 (445)
--+.++|+++.|.++++-+.+..-+.-...-+.|- ..+--..++..|.+.-+...... .-+....+.--+...-.|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 35678899999999998887654333222222222 22222446777777666655432 1122222222223345789
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHH
Q 013323 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~ 206 (445)
+++|.++|++....+-.-....||+=+ .+-..|++++|++.|-.+..- +.-+..+...+-.-|-...+ +..+.+++
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led--~aqaie~~ 581 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLED--PAQAIELL 581 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhC--HHHHHHHH
Confidence 999999999998754333333444333 355678999999999877542 11233333333333332221 12222222
Q ss_pred HHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC
Q 013323 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286 (445)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 286 (445)
-. ....++.|+.+.+-+-..|-+.|+-..|.+.+-.-.+
T Consensus 582 ~q----------------------------------------~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr- 620 (840)
T KOG2003|consen 582 MQ----------------------------------------ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR- 620 (840)
T ss_pred HH----------------------------------------hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-
Confidence 22 1133477888999999999999999999887755332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCc
Q 013323 287 RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSP 365 (445)
Q Consensus 287 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~ 365 (445)
-++.|..|..-|-.-|....=++++..+|+... -+.|+..-|..+|..| +.+.|. ++|++++++..++ ++-|.
T Consensus 621 yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc---~rrsgnyqka~d~yk~~hrk-fpedl 694 (840)
T KOG2003|consen 621 YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASC---FRRSGNYQKAFDLYKDIHRK-FPEDL 694 (840)
T ss_pred ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHh-Cccch
Confidence 245588898888888899999999999998653 3789999999999864 467788 9999999997654 56688
Q ss_pred chhhHHHHHhh
Q 013323 366 RMGSDLLLVAA 376 (445)
Q Consensus 366 ~~~~~ll~~~~ 376 (445)
.+...|++.|.
T Consensus 695 dclkflvri~~ 705 (840)
T KOG2003|consen 695 DCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHHhc
Confidence 88888888876
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.73 E-value=3.7e-05 Score=74.90 Aligned_cols=352 Identities=11% Similarity=0.002 Sum_probs=207.6
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC
Q 013323 30 EEYARRNY---ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG 106 (445)
Q Consensus 30 ~~~~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 106 (445)
.++....+ ..+...|-.|-..|-+.|+.+++...+-..-. -.+-|..-|..+-....+.|+++.|.-.|....+..
T Consensus 159 ~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 159 EEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred HHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 44444444 34567788888889999998888876654432 233466778888888888888999999998888865
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCH
Q 013323 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN----GQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDK 181 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~ 181 (445)
+++...+=-=...|-+.|+...|..-|.++.+..-+.| ..+--.+++.+...++.+.|.+.++.....+ -..+.
T Consensus 238 -p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ 316 (895)
T KOG2076|consen 238 -PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASL 316 (895)
T ss_pred -CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc
Confidence 24444444456677888888888888888877532222 2333345666666777788888777766532 12223
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHH--------------------------hcCCccccccccccchhhcccchh
Q 013323 182 FCYAGLITAHTNKIPRADDTATKIIELVEQ--------------------------SKGWSSVETSGNNAENEMMGVSKE 235 (445)
Q Consensus 182 ~~~~~li~~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
.+++.+...+.+.... +.+......... ....+..+.......-+..-...+
T Consensus 317 ed~ni~ael~l~~~q~--d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e 394 (895)
T KOG2076|consen 317 EDLNILAELFLKNKQS--DKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERE 394 (895)
T ss_pred cHHHHHHHHHHHhHHH--HHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccc
Confidence 3333333333322211 222222222221 011111111100111111111111
Q ss_pred hhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 013323 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVF 315 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 315 (445)
....+........ -.+..+...|.-+..++...|++.+|..++..+......-+..+|-.+-.+|-..|..+.|.+.|
T Consensus 395 ~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 395 LLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred hHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 1111111111100 00134556788899999999999999999999987655556888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHh--------CCCCCCcchhhHHHHHhhcccCCChhhH
Q 013323 316 EDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNS--------RNIFLSPRMGSDLLLVAAGEKSGGYTTA 386 (445)
Q Consensus 316 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~--------~~~~p~~~~~~~ll~~~~~~~~g~~~~A 386 (445)
+..... .+.++.+.|.- ..-+.+.|. ++|.+++..+.. .+..|+...-......+. +.|+.++=
T Consensus 473 ~kvl~~----~p~~~D~Ri~L-asl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~--~~gk~E~f 545 (895)
T KOG2076|consen 473 EKVLIL----APDNLDARITL-ASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF--QVGKREEF 545 (895)
T ss_pred HHHHhc----CCCchhhhhhH-HHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH--HhhhHHHH
Confidence 998876 22333333321 113577787 999999998652 122333333333333444 78888876
Q ss_pred HHHHHHHH
Q 013323 387 NYIWDLMQ 394 (445)
Q Consensus 387 ~~~~~~m~ 394 (445)
..+-..|.
T Consensus 546 i~t~~~Lv 553 (895)
T KOG2076|consen 546 INTASTLV 553 (895)
T ss_pred HHHHHHHH
Confidence 55555554
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.70 E-value=0.00024 Score=67.09 Aligned_cols=360 Identities=9% Similarity=0.039 Sum_probs=219.8
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 122 (445)
+|+.--..|.+.+.++-|..+|....+. ++-+...|......--..|..++...+|+.....- +-....|-...+-+.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 3444444555555555556666555443 22244456555555556667777777777766542 223444555556666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a 202 (445)
..|++..|..++.+.-+..-. +...|-+-+..-..+.+++.|..+|.+....+ |+..+|..-+....-.+.. +.+
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~--eeA 670 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNV--EEA 670 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhH--HHH
Confidence 678888888888777665322 56678888888888888888888888776643 5555554444333333333 677
Q ss_pred HHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccC-chhHHHHHHHHHHhcccHHHHHHHHH
Q 013323 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR-LLTVYHVAFHACAELKDVQAMETLLE 281 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 281 (445)
.++++...+. ++... -..++.|+..+....+...-.....+-...| .+..|-.+...=-+.|.+-.|..+++
T Consensus 671 ~rllEe~lk~--fp~f~-----Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFH-----KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred HHHHHHHHHh--CCchH-----HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 7777654432 11111 1223333333333333222222222111123 33455555555566778899999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCC
Q 013323 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 282 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~ 360 (445)
.-.-.+ +-|...|-..|.+-.+.|+.+.|..+.....+. ++-+...|..-|. -..+.++ ......+++.
T Consensus 744 rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~----le~~~~rkTks~DALkkc---- 813 (913)
T KOG0495|consen 744 RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIW----LEPRPQRKTKSIDALKKC---- 813 (913)
T ss_pred HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHH----hccCcccchHHHHHHHhc----
Confidence 766543 347788999999999999999999888877765 4446667777776 3344444 4444443332
Q ss_pred CCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCC-HHHHHHHHhhhhccCCCCCCCchhhhhhcc
Q 013323 361 IFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS-LPAVEAYYNGLKDREVPADDPRLVVVSRAY 431 (445)
Q Consensus 361 ~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~l~~~~~~ 431 (445)
.-|+.....+-..+. ...++++|.+-|.+-.+.+ || -.+|.-++.-..+.|..++-..++..|-.+
T Consensus 814 -e~dphVllaia~lfw--~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 814 -EHDPHVLLAIAKLFW--SEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred -cCCchhHHHHHHHHH--HHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 246676666666666 7889999999998887644 33 345666677778888888888888887553
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.62 E-value=2e-05 Score=75.23 Aligned_cols=283 Identities=12% Similarity=0.118 Sum_probs=161.4
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH-Hc---
Q 013323 84 VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA-AA--- 159 (445)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~-~~--- 159 (445)
..+...|+.++|++.++.-.+. +..........-..+.+.|+.++|..+|..+.+.+ |+...|-..+..+. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3445566777776666553332 22223444555566666677777777777666653 44444444333333 11
Q ss_pred --CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhh
Q 013323 160 --GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237 (445)
Q Consensus 160 --g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (445)
.+.+...++|+++...- |......-+.-.+.. | +......+....
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g----~~F~~~~~~yl~-------------------------- 135 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-G----DEFKERLDEYLR-------------------------- 135 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-H----HHHHHHHHHHHH--------------------------
Confidence 13445555666555442 333332222211211 1 112222111111
Q ss_pred cchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHH
Q 013323 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----R----------KSPDV--YIVMQNIRC 301 (445)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~----------~~p~~--~~~~~li~~ 301 (445)
..-+.|+ +.+|+.+-..|....+..-..+++...... + -.|.. .++.-+-..
T Consensus 136 --------~~l~Kgv----PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 136 --------PQLRKGV----PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred --------HHHhcCC----chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 0111122 235777777777666666666666665432 1 12444 355666778
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhccc
Q 013323 302 YLHSGDIDNGHKVFEDYICSEKFPP-AELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEK 379 (445)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 379 (445)
|-..|++++|+++.+..+++ .|+ +..|.+--+ .+-+.|+ ++|.+.++..+..+. -|...-+-....+. +
T Consensus 204 yd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar----ilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L--R 274 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR----ILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL--R 274 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH----HHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH--H
Confidence 88999999999999998887 344 444444444 4678898 999999999988774 24444444444444 9
Q ss_pred CCChhhHHHHHHHHHHCCCCCCHHH--HHHH------HhhhhccCCCCCCCc
Q 013323 380 SGGYTTANYIWDLMQARKITPSLPA--VEAY------YNGLKDREVPADDPR 423 (445)
Q Consensus 380 ~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l------~~~~~~~~~~~~a~~ 423 (445)
+|++++|.+++....+.+..|-... ..++ -+++.+.|....|..
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999987776443322 2222 356777777766664
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.59 E-value=3.7e-05 Score=72.61 Aligned_cols=245 Identities=14% Similarity=0.083 Sum_probs=171.7
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHhcCCChhHHHHHHHHHHHC-----C--
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-----GV-QPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKAN-----G-- 106 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-- 106 (445)
..+...+-..|...|+++.|..++++-.+. |. -|...+ .+.+-..|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344556889999999999999999887653 21 233333 333556778899999999999998642 2
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CccH-HHHHHHHHHHHHcCChhhHHHHHHHHHHc---C
Q 013323 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK-----YEV-KPNG-QTYVCLLNACAAAGQLDPVYAIVRDMTAA---G 176 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g 176 (445)
.+.-..+++.|-..|.+.|++++|...+++..+ .|. .|.. .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 112245778888899999999888877765432 121 2222 34677888899999999999999876542 1
Q ss_pred CCCC----HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCc
Q 013323 177 AGLD----KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGF 252 (445)
Q Consensus 177 ~~p~----~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 252 (445)
+.++ ..+++.+-..|.+.|+. +.|..+++...+...-. ..+.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~--~ea~~~~k~ai~~~~~~--------------------------------~~~~ 404 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKY--KEAEELYKKAIQILREL--------------------------------LGKK 404 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHhc--------------------------------ccCc
Confidence 2222 46788888899999988 88988888766532100 0001
Q ss_pred ccCchhHHHHHHHHHHhcccHHHHHHHHHHHHh----CC-CCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 013323 253 LSRLLTVYHVAFHACAELKDVQAMETLLEMLKK----DR-KSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYI 319 (445)
Q Consensus 253 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (445)
..-....++.+-..|.+.++.++|.++|.+-.. .| -.|+ ..+|..|...|...|+++.|.++.+...
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 112234577788888888889988888875432 23 2333 4589999999999999999999988776
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.6e-05 Score=68.29 Aligned_cols=239 Identities=10% Similarity=0.054 Sum_probs=174.5
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcCCChhH-HHHHHHHHHHCCCC
Q 013323 32 YARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ--PTRDLFHSLIVGTMKGSRLQD-TFFFRDQMKANGFL 108 (445)
Q Consensus 32 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~g~~ 108 (445)
....|+.-+...=+-.-.+.-...++++|..+|+++.+...- -|..+|..++-.--....+.- |..++ .. ..
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~i--dK-- 327 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NI--DK-- 327 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hh--cc--
Confidence 344555555555455555566788999999999999887311 166678877755433222221 11111 11 12
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 109 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
--+.|..++-+-|+-.++.++|..+|++..+.+- .....|+.+-.-|....+...|.+.++...+-. +-|-..|-.+=
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLG 405 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLG 405 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhh
Confidence 3346777888889999999999999999987642 346789999999999999999999999998853 34667777777
Q ss_pred HHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHH
Q 013323 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268 (445)
Q Consensus 189 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 268 (445)
.+|.-.+.. .-+.-.|+..... .+.|...|.+|-.+|.
T Consensus 406 QaYeim~Mh--~YaLyYfqkA~~~----------------------------------------kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 406 QAYEIMKMH--FYALYYFQKALEL----------------------------------------KPNDSRLWVALGECYE 443 (559)
T ss_pred HHHHHhcch--HHHHHHHHHHHhc----------------------------------------CCCchHHHHHHHHHHH
Confidence 777665533 4455555554432 2678899999999999
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 269 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
+.++.++|.+-|......| ..+...|..|-..|-+.++.++|-+.|+.-.+
T Consensus 444 kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999887655 34668899999999999999999999987665
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=0.00034 Score=63.64 Aligned_cols=352 Identities=12% Similarity=0.062 Sum_probs=209.6
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 013323 28 GAEEYARRNY--ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105 (445)
Q Consensus 28 ~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (445)
|+.+...+++ .|+..+|++.|..=.+-+.++.|..+++...-. -|+..+|......=-++|+...+.++|+...+.
T Consensus 159 gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5555666654 799999999999999999999999999998764 499999998888888899999999888877653
Q ss_pred -CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------------------------C------------------
Q 013323 106 -GF-LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY------------------------E------------------ 141 (445)
Q Consensus 106 -g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------------------------g------------------ 141 (445)
|- .-+...|++.-.-=.++..++.|.-+|+-.... |
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 011122222222222233333333333221110 1
Q ss_pred -CCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH-ccCCCchHHHHHHHHHHHHh
Q 013323 142 -VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK-------FCYAGLITAHT-NKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 142 -~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~-~~~~~~~~~a~~~~~~~~~~ 212 (445)
-+.|-.+|--.+..--..|+.+...++|+..... ++|-. .+|--+=-++. ...--+.+..+++++...+.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 1235566666777777778888888888888765 34411 12222211221 11111336666676655441
Q ss_pred cCCccccccccccchhhcccchhhhcchhhhhHHhhh-cCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-
Q 013323 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR-GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP- 290 (445)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 290 (445)
.+.....-.-.-++.+...-.-.++..+-..+.. -|. .|...+|..-|..=.+.+.++.+..+++...+- .|
T Consensus 396 ---IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe 469 (677)
T KOG1915|consen 396 ---IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPE 469 (677)
T ss_pred ---cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChH
Confidence 1100000000001111110000111111111111 133 667778888888888889999999999998874 45
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchh
Q 013323 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMG 368 (445)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~ 368 (445)
|..+|......-...|+.+.|..+|+...+. ........|.+.|+ --...|. +.|..+++.+.+..- ...+|
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId----FEi~~~E~ekaR~LYerlL~rt~--h~kvW 543 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID----FEIEEGEFEKARALYERLLDRTQ--HVKVW 543 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh----hhhhcchHHHHHHHHHHHHHhcc--cchHH
Confidence 6678888877778899999999999988877 34445566666666 3456666 999999999987652 33344
Q ss_pred hHHHHHh---hcccCC-----------ChhhHHHHHHHHH
Q 013323 369 SDLLLVA---AGEKSG-----------GYTTANYIWDLMQ 394 (445)
Q Consensus 369 ~~ll~~~---~~~~~g-----------~~~~A~~~~~~m~ 394 (445)
.+...-- +-.+.| .+..|..+|++..
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 4333211 111233 5667888887765
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.53 E-value=0.001 Score=63.11 Aligned_cols=354 Identities=10% Similarity=0.025 Sum_probs=193.1
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHc
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQ----MKANGFLPDVAVYNYLISVCGK 123 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~~~ 123 (445)
..++++...++.|..+++..++. ++.+...|.+.-..=-.+|+.+...++.+. +...|+..+..-|-.=-..|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 45666777777788888877553 666777777777777777888877777664 4456777777777776677777
Q ss_pred cCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHH
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPN--GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 201 (445)
.|..--+..+......-|+.-. ..||...-..|.+.+.++-|..+|....+- ++-+...|......--..|.. +.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~--Es 568 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR--ES 568 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH--HH
Confidence 7777777777776666555432 356777777777777777777777666653 122344444444333333433 55
Q ss_pred HHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHH
Q 013323 202 ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281 (445)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 281 (445)
...+++.....-.-...............+. ..+...+....+. ..+.+..+|-+.+..-..+..++.|..+|.
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agd-v~~ar~il~~af~-----~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGD-VPAARVILDQAFE-----ANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCC-cHHHHHHHHHHHH-----hCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 5555554333211000000000000000000 0000011111110 113455677777777777778888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCC
Q 013323 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 282 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~ 360 (445)
.... ..|+..+|.--+..--..++.++|.+++++..+. .|+-.-+-.++.- -+-+.++ +.|.+.|..=.+.
T Consensus 643 kar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ---i~e~~~~ie~aR~aY~~G~k~- 714 (913)
T KOG0495|consen 643 KARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ---IEEQMENIEMAREAYLQGTKK- 714 (913)
T ss_pred HHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH---HHHHHHHHHHHHHHHHhcccc-
Confidence 6554 4566666666666666677778888877766554 3333332222211 1233333 4454444332221
Q ss_pred CCCCcc-hhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCc
Q 013323 361 IFLSPR-MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPR 423 (445)
Q Consensus 361 ~~p~~~-~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 423 (445)
-|+.. .|-.+...-- +.|.+-+|..+|++-+-++ +-+...|-..|+.=.+.|..+.|..
T Consensus 715 -cP~~ipLWllLakleE--k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEE--KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred -CCCCchHHHHHHHHHH--HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 23333 3333333333 6667777777777665443 2344555566666566666666555
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.52 E-value=0.00062 Score=63.25 Aligned_cols=307 Identities=12% Similarity=-0.015 Sum_probs=163.1
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCC-CCCCHHHH-HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLF-HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
.|..+-..+...|+.+.+...+....+.. ..++...- ......+...|+.++|.+++++..+.. +.|...++. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 34444455555677777666655544321 12232221 122234566789999999999887753 233444442 222
Q ss_pred HH----ccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 013323 121 CG----KCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195 (445)
Q Consensus 121 ~~----~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 195 (445)
+. ..+..+.+.+.++. ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+-..+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22 23445555555554 1222333 3444556677788899999999999988864 234555666666777777
Q ss_pred CCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHH
Q 013323 196 PRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQA 275 (445)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~ 275 (445)
+. +.+...++.........+ ......|..+...+...|+.++
T Consensus 163 ~~--~eA~~~l~~~l~~~~~~~------------------------------------~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 163 RF--KEGIAFMESWRDTWDCSS------------------------------------MLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred CH--HHHHHHHHhhhhccCCCc------------------------------------chhHHHHHHHHHHHHHCCCHHH
Confidence 65 777777776543210000 1112345567777888888888
Q ss_pred HHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCChhhHHHHHHHHHh---CCCCCCHHHHHHHHHhHhhcCChhhH-H
Q 013323 276 METLLEMLKKDRK-SPDVYIV-M--QNIRCYLHSGDIDNGHKVFEDYIC---SEKFPPAELYATLVEGAMFGYTPKGM-Q 347 (445)
Q Consensus 276 a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~g~-~ 347 (445)
|..+++....... .+..... + .++.-+...|..+.+.++ +.+.. .........+..+..+. ++...|. +
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~ 281 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAAL--ALAGAGDKD 281 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHH--HHhcCCCHH
Confidence 8888888753321 1222211 1 233334444544444333 22211 11111112222222211 4566665 7
Q ss_pred HHHHHHHHHHhCCCC------CCcchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 348 LAQDTLVNMNSRNIF------LSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 348 ~a~~~~~~m~~~~~~------p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
.|..+++.+...... ....+-..++.+..+...|++++|...+.+-..
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888777653322 111222334444445578888888888777653
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.51 E-value=8.9e-05 Score=69.71 Aligned_cols=338 Identities=14% Similarity=0.126 Sum_probs=198.2
Q ss_pred HHHHHhcCCC--CC--hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----------------
Q 013323 29 AEEYARRNYA--NN--ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK---------------- 88 (445)
Q Consensus 29 ~~~~~~~~~~--p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---------------- 88 (445)
-....+.|+. +| ...|++|...|.+.|.++.|.++|++-.+.- .+..-|..+.++|++
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3455566653 34 4579999999999999999999998876542 344456666666542
Q ss_pred CC------ChhHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc------c
Q 013323 89 GS------RLQDTFFFRDQMKANGF-----------LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP------N 145 (445)
Q Consensus 89 ~~------~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p------~ 145 (445)
.+ +++-...-|+.+...+- +-++..|..-+..+ .|+..+-...|.+.... +.| -
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~ 386 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSP 386 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCCh
Confidence 11 23334445555544321 12344555544443 56777778888877653 222 2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCcccccccccc
Q 013323 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225 (445)
Q Consensus 146 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 225 (445)
...|..+-.-|-+.|+++.|..+|++..+-..+ .+.-...+--.++.. ....+.....+..|.+.-..+....
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waem-Elrh~~~~~Al~lm~~A~~vP~~~~----- 459 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEM-ELRHENFEAALKLMRRATHVPTNPE----- 459 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhhhcCCCchh-----
Confidence 356889999999999999999999999886553 332223332233221 1111333333334443322221100
Q ss_pred chhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013323 226 ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 305 (445)
.....+.. +.. ..+..+...|...++.--..|-++....+++.+.+..+.......| ...-+-.+
T Consensus 460 ~~~yd~~~-------pvQ-------~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh 524 (835)
T KOG2047|consen 460 LEYYDNSE-------PVQ-------ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEH 524 (835)
T ss_pred hhhhcCCC-------cHH-------HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhh
Confidence 00000000 000 0013344567766666666778888899999988876554444433 12223456
Q ss_pred CChhhHHHHHHHHHhCCCCCCH-HHHHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChh
Q 013323 306 GDIDNGHKVFEDYICSEKFPPA-ELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYT 384 (445)
Q Consensus 306 g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~ 384 (445)
.-+++++++|++=+..=..|++ ..|+..+.-++.-|.....+.|..+|++..+ |.+|...-+-.++-+-.-.+.|...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 6688888888764444222333 4677777655555665556999999999998 6666655544444433334668888
Q ss_pred hHHHHHHHHH
Q 013323 385 TANYIWDLMQ 394 (445)
Q Consensus 385 ~A~~~~~~m~ 394 (445)
.|+.++++..
T Consensus 604 ~amsiyerat 613 (835)
T KOG2047|consen 604 HAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHH
Confidence 8888888753
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.51 E-value=6.6e-05 Score=70.98 Aligned_cols=207 Identities=16% Similarity=0.095 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CC
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKAN-----GF-LPDVA-VYNYLISVCGKCKNSDQAIRIFEEMKKY-----E-VK 143 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~ 143 (445)
.+...+-..|...|+++.|..+++...+. |. .|... ..+.+-..|...+++++|..+|+++..- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35666888899999999999999887653 21 13332 3444667788889999999999887631 2 12
Q ss_pred c-cHHHHHHHHHHHHHcCChhhHHHHHHHHHH-----cCC-CCCHHH-HHHHHHHHHccCCCchHHHHHHHHHHHHhcCC
Q 013323 144 P-NGQTYVCLLNACAAAGQLDPVYAIVRDMTA-----AGA-GLDKFC-YAGLITAHTNKIPRADDTATKIIELVEQSKGW 215 (445)
Q Consensus 144 p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~~~~-~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~ 215 (445)
| -..+++.|-..|.+.|++++|...++...+ .|. .|.+.. ++.+...+...++. +.+..++....+.-.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~--Eea~~l~q~al~i~~- 356 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY--EEAKKLLQKALKIYL- 356 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHH-
Confidence 2 245677777889999999988888777643 122 233322 33334445555544 666666654332110
Q ss_pred ccccccccccchhhcccchhhhcchhhhhHHhhhcCccc-CchhHHHHHHHHHHhcccHHHHHHHHHHHHhC------CC
Q 013323 216 SSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS-RLLTVYHVAFHACAELKDVQAMETLLEMLKKD------RK 288 (445)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~ 288 (445)
...|... --..+++.+-..|-..|++++|.++++..... +.
T Consensus 357 --------------------------------~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 357 --------------------------------DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred --------------------------------hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 0001101 12346777777777777777777777755431 11
Q ss_pred CCC-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 013323 289 SPD-VYIVMQNIRCYLHSGDIDNGHKVFEDY 318 (445)
Q Consensus 289 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (445)
.+. ...++.|-..|.+.+++++|.++|.+-
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 222 345666777777777777777776653
No 64
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.47 E-value=2.8e-07 Score=53.03 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 75 (445)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.47 E-value=0.00031 Score=63.13 Aligned_cols=219 Identities=14% Similarity=0.031 Sum_probs=142.8
Q ss_pred cCcHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 013323 54 QRRFFLLRDVYDDMMLDG-VQPT--RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 130 (445)
.+..+.++.-+.++.... ..|+ ...|..+-..+.+.|+.++|...|++..+.. +.+...|+.+-..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 456677777777777532 3333 2346666667888999999999999998865 24578999999999999999999
Q ss_pred HHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHH
Q 013323 131 IRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209 (445)
Q Consensus 131 ~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~ 209 (445)
...|+...+. .| +..+|..+...+...|++++|.+.|+...+.. |+..............+ +.+.|...++..
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~--~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKL--DPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccC--CHHHHHHHHHHH
Confidence 9999999874 34 36678888888889999999999999988753 44322111111122233 337777777543
Q ss_pred HHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC-C-
Q 013323 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD-R- 287 (445)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~- 287 (445)
.... .++...+ .+. ....|+...+ +.+..+.+. .
T Consensus 192 ~~~~----------------------------------------~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 192 YEKL----------------------------------------DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HhhC----------------------------------------CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCC
Confidence 3210 1111111 122 2224444333 244444321 1
Q ss_pred ---CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 013323 288 ---KSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323 (445)
Q Consensus 288 ---~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 323 (445)
+.| ....|..+-..+.+.|++++|...|+...+.+.
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 112 234688888899999999999999999887653
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.6e-05 Score=68.47 Aligned_cols=231 Identities=9% Similarity=0.019 Sum_probs=173.9
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY-NYLISVCGK 123 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~ 123 (445)
+-+-.+|.+.|...+|...|+.-.+. .|-..||..|-++|-+-.+.+.|+.++.+-.+. -|-.+|| .-.-+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 46678999999999999988876654 477889999999999999999999999988775 2555554 446667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHH
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~ 203 (445)
.++.++|.++|+...+.. ..+.+....+-.+|.-.+++|-|+..|+.+.+-|+. +...|..+--.|.-.+.. |.+.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~--D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI--DLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch--hhhH
Confidence 899999999999987753 236677777888888899999999999999999976 666777666666666655 6677
Q ss_pred HHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHH
Q 013323 204 KIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEML 283 (445)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 283 (445)
.-|++....-.-+ ..-..+|-.+-......||+..|.+-|...
T Consensus 379 ~sf~RAlstat~~-------------------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 379 PSFQRALSTATQP-------------------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHhhccCc-------------------------------------chhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 7777655432110 011123444555566679999999999877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 284 KKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 284 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
..+. .-+...+|.|--.-.+.|+++.|..++......
T Consensus 422 L~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 422 LTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6543 235668888888888999999999999877654
No 67
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.43 E-value=3.7e-07 Score=52.12 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP 74 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 74 (445)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567777777777777777777777777777766
No 68
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=4e-07 Score=52.39 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=20.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 145 (445)
+||++|++|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666555
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4.6e-05 Score=65.78 Aligned_cols=238 Identities=11% Similarity=0.006 Sum_probs=178.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHH
Q 013323 71 GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150 (445)
Q Consensus 71 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~ 150 (445)
|...|-.-=+.+-+.|.+.|...+|.+.|+.-.+.. |-+.||-.|-++|-+...++.|+.+|.+-.+. .|-.+||-
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l 293 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL 293 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh
Confidence 333444444677789999999999999999888763 77889999999999999999999999988764 56666654
Q ss_pred -HHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhh
Q 013323 151 -CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEM 229 (445)
Q Consensus 151 -~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (445)
-+.+.+-..++.++|.++|+...+.. ..++.....+-..|.-.+.. +.|...+.++.+-+.
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P--E~AlryYRRiLqmG~--------------- 355 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP--EMALRYYRRILQMGA--------------- 355 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh--HHHHHHHHHHHHhcC---------------
Confidence 46667777899999999999988753 23555666666677766655 999999999988653
Q ss_pred cccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 013323 230 MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY--IVMQNIRCYLHSGD 307 (445)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~ 307 (445)
-+...|+.+--+|.-.++++.+.--|......--.|+.. +|-.|-......|+
T Consensus 356 -------------------------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 356 -------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred -------------------------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 344567777777888888999888887766543344432 45556666778999
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCC
Q 013323 308 IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 308 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~ 360 (445)
+..|.+.|+....++-. ....++.|-- --.+.|+ +.|..++.......
T Consensus 411 ~nlA~rcfrlaL~~d~~-h~ealnNLav----L~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQ-HGEALNNLAV----LAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHHHHHHhccCcc-hHHHHHhHHH----HHhhcCchHHHHHHHHHhhhhC
Confidence 99999999988877433 3445555433 2377888 99999999877653
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.0006 Score=63.42 Aligned_cols=276 Identities=8% Similarity=0.020 Sum_probs=170.6
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhH
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a 165 (445)
|-..+++.+..++++...+.. ++....+..=|.++...|+..+-..+=.+|.+.- +-.+.+|-++---|...|..++|
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHH
Confidence 344566666666666666543 3444455555556666666555554445554431 22355666666666666667777
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhh
Q 013323 166 YAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAE 244 (445)
Q Consensus 166 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (445)
.+.|.+...-. |. ...|-..-+.|+-.+.. |.+...+-...+.
T Consensus 332 Rry~SKat~lD--~~fgpaWl~fghsfa~e~Eh--dQAmaaY~tAarl-------------------------------- 375 (611)
T KOG1173|consen 332 RRYFSKATTLD--PTFGPAWLAFGHSFAGEGEH--DQAMAAYFTAARL-------------------------------- 375 (611)
T ss_pred HHHHHHHhhcC--ccccHHHHHHhHHhhhcchH--HHHHHHHHHHHHh--------------------------------
Confidence 66666554421 11 22233333334433332 4444333332221
Q ss_pred HHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--
Q 013323 245 YVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-- 321 (445)
Q Consensus 245 ~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 321 (445)
+ .|...|.. | +---|.+.+..+.|.++|..... +-| |..+++-+--..-..+.+.+|..+|......
T Consensus 376 --~--~G~hlP~L--Y--lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 376 --M--PGCHLPSL--Y--LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred --c--cCCcchHH--H--HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 0 12223322 2 23347788999999999987654 556 6677777766677789999999999987633
Q ss_pred CCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCC
Q 013323 322 EKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITP 400 (445)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p 400 (445)
.+-+...+|..++.-+-++|.+.+. ++|+..+++..... +-+..++.++-..+. ..|+++.|...|.+-. .+.|
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~--llgnld~Aid~fhKaL--~l~p 520 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYH--LLGNLDKAIDHFHKAL--ALKP 520 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHH--HhcChHHHHHHHHHHH--hcCC
Confidence 2223333566666655557788888 99999999988765 346777777766666 9999999999998766 6889
Q ss_pred CHHHHHHHHhhhhc
Q 013323 401 SLPAVEAYYNGLKD 414 (445)
Q Consensus 401 ~~~~~~~l~~~~~~ 414 (445)
+..+.+.++.-+.+
T Consensus 521 ~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 521 DNIFISELLKLAIE 534 (611)
T ss_pred ccHHHHHHHHHHHH
Confidence 99888888865544
No 71
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.40 E-value=4.4e-07 Score=51.82 Aligned_cols=32 Identities=44% Similarity=0.843 Sum_probs=14.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 144 (445)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.38 E-value=0.00052 Score=63.76 Aligned_cols=302 Identities=11% Similarity=-0.034 Sum_probs=171.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANG-FLPDVA-VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
|..+-..+...|+.+.+.+.+....+.. -.++.. ........+...|++++|.+++++..+.. +.|...+.. ...+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHH
Confidence 4444455556677777766666655432 122322 22223334567899999999999987652 223444443 2233
Q ss_pred HHc----CChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcc
Q 013323 157 AAA----GQLDPVYAIVRDMTAAGAGLDK-FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMG 231 (445)
Q Consensus 157 ~~~----g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (445)
... +..+.+.+.+.. ..+..|+. .....+-..+...|+. +.+...++......
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~--~~A~~~~~~al~~~------------------ 144 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQY--DRAEEAARRALELN------------------ 144 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhC------------------
Confidence 333 444445544443 22233443 3333444566677765 88888888776542
Q ss_pred cchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCh
Q 013323 232 VSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK-SPDV--YIVMQNIRCYLHSGDI 308 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~ 308 (445)
+.+...+..+-..+...|++++|...++...+..- .|+. ..|..+...+...|++
T Consensus 145 ----------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 145 ----------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred ----------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 44566778888889999999999999998776421 2333 3455788889999999
Q ss_pred hhHHHHHHHHHhCCC-CCCHHHH-HH---HHHhHhhcCChhhH-HHHHH---HHHHHHhCCCCCCcchhhHHHHHhhccc
Q 013323 309 DNGHKVFEDYICSEK-FPPAELY-AT---LVEGAMFGYTPKGM-QLAQD---TLVNMNSRNIFLSPRMGSDLLLVAAGEK 379 (445)
Q Consensus 309 ~~a~~~~~~m~~~~~-~p~~~~~-~~---li~~~~~~~~~~g~-~~a~~---~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 379 (445)
++|.++|+....... .+..... +. +.. +...|. ..+.. +...-.. ........+..+..++.+..
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWR-----LELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHH-----HHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 999999999864422 1222211 11 111 122221 11111 1111111 11112233443444444559
Q ss_pred CCChhhHHHHHHHHHHCCCC------CCHHHHHHHHhh--hhccCCCCCCCchhhhhhccc
Q 013323 380 SGGYTTANYIWDLMQARKIT------PSLPAVEAYYNG--LKDREVPADDPRLVVVSRAYD 432 (445)
Q Consensus 380 ~g~~~~A~~~~~~m~~~~~~------p~~~~~~~l~~~--~~~~~~~~~a~~~l~~~~~~~ 432 (445)
.|+.+.|..+++.+...... ....+-..++.+ +...|..++|.+++.......
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999752221 111222233444 457888889988766654433
No 73
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.37 E-value=7.5e-06 Score=59.15 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=34.5
Q ss_pred HHhcCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGF-LPDVAVYNYLISVCGKCK--------NSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
-|...+++.....+|+.+++.|+ .|++.+||.++.+.++.. ++-..+.+|+.|...+++|+..||+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344455555555555555554 445555555554444322 122344445555555555555555555544
Q ss_pred HH
Q 013323 156 CA 157 (445)
Q Consensus 156 ~~ 157 (445)
+.
T Consensus 114 Ll 115 (120)
T PF08579_consen 114 LL 115 (120)
T ss_pred HH
Confidence 43
No 74
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.36 E-value=0.001 Score=65.87 Aligned_cols=310 Identities=10% Similarity=0.043 Sum_probs=160.6
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHC---CCCCCHH-----H--HHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD---GVQPTRD-----L--FHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~-----~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 108 (445)
+-+...|.+-......|+++.|.+.|+.-... ...+|.. | ||. -...-..++.+.|.++|..+.+..
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl-arl~E~l~~~~~A~e~Yk~Ilkeh-- 526 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL-ARLLEELHDTEVAEEMYKSILKEH-- 526 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHC--
Confidence 45555566666666666666666666655443 1122221 1 221 112223346666666666666532
Q ss_pred CCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCHHHHHH
Q 013323 109 PDV-AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAG 186 (445)
Q Consensus 109 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ 186 (445)
|+- ..|--+....-..+...+|..++....+.+ ..|+..++.+-..+.....+..|.+-|+...+.- ..+|+++.-+
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 331 122222211112244556666666555432 2344455555556666666666666555554431 1244444433
Q ss_pred HHHHHHcc----CCCc------hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCc
Q 013323 187 LITAHTNK----IPRA------DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256 (445)
Q Consensus 187 li~~~~~~----~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 256 (445)
|=+.|... .+.. .+.|.++|..+.+.. +.|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d----------------------------------------pkN 645 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND----------------------------------------PKN 645 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC----------------------------------------cch
Confidence 33322211 1100 122333333322221 344
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYATLVE 335 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 335 (445)
...=|-+--.++..|++..|..||....+... -+.-+|-.+-..|...|++-.|.++|+...+. .-.-+....+.|-+
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 44455556667778888888888888877543 23345666788888888888888888876655 43445555555555
Q ss_pred hHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhh----------------cccCCChhhHHHHHHHHHHCC
Q 013323 336 GAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAA----------------GEKSGGYTTANYIWDLMQARK 397 (445)
Q Consensus 336 ~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----------------~~~~g~~~~A~~~~~~m~~~~ 397 (445)
++-+.|. .++.+.+.........-..+.||..+...- ....+..+.|.++|..|...+
T Consensus 725 ----a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 725 ----AWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred ----HHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5666666 777776666555433222233443321111 113456677888888887543
No 75
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=0.00066 Score=69.55 Aligned_cols=129 Identities=6% Similarity=0.011 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT-----RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 115 (445)
...|-..|....+.+..+.|.+++++.... |.+. ...|.++++.---.|.-+...++|++..+.. -...+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 334444455555555555555555444331 1111 1134444444444444444455555544431 1123344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.|...|.+.+..++|.++|+.|.+. | -....|...+..+.+..+-+.|..++.+..+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4555555555555555555555432 2 2334444455555554444445554444433
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.35 E-value=0.00068 Score=60.96 Aligned_cols=201 Identities=9% Similarity=0.000 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISV 120 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 120 (445)
..|..+-..+.+.|+++.|...|++..+.. +.+...|+.+-..+...|++++|...|+...+.. | +..+|..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 446666677889999999999999988754 2356789999999999999999999999999854 5 46788888899
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchH
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 200 (445)
+...|++++|.+.|+...+. .|+..........+...++.++|...|++..... .|+...+ .+... ..|+. .
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~--~ 213 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKI--S 213 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCC--C
Confidence 99999999999999998875 3543322222333445678999999997755432 3332222 22222 23443 2
Q ss_pred HHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHH
Q 013323 201 TATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280 (445)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 280 (445)
.. ..++.+.....-... ..+.....|..+-..+.+.|+.++|...|
T Consensus 214 ~~-~~~~~~~~~~~~~~~---------------------------------l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 214 EE-TLMERLKAGATDNTE---------------------------------LAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HH-HHHHHHHhcCCCcHH---------------------------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22 244443321100000 00223457888999999999999999999
Q ss_pred HHHHhCC
Q 013323 281 EMLKKDR 287 (445)
Q Consensus 281 ~~m~~~~ 287 (445)
+......
T Consensus 260 ~~Al~~~ 266 (296)
T PRK11189 260 KLALANN 266 (296)
T ss_pred HHHHHhC
Confidence 9988654
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.34 E-value=3.5e-05 Score=68.36 Aligned_cols=223 Identities=12% Similarity=0.030 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVCG 122 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 122 (445)
.--+.+++.-.|+.+.++ .+..... .|.......+...+...++-+.+..-+++.......+ +....-..-..+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 344566777777765433 4443333 5666665555554544344455544444433333222 2222222224456
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCCchH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIPRADD 200 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~~~~ 200 (445)
..|++++|++++..- .+.......+..+.+.++++.|.+.++.|.+.. .| .+...+..++.. .|.....
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 678888888777642 356667778888888888888888888887653 23 333334444332 2222235
Q ss_pred HHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHH
Q 013323 201 TATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLL 280 (445)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 280 (445)
.|..+|+.+.+.. .++..+.+.+..+....|++++|..++
T Consensus 185 ~A~y~f~El~~~~----------------------------------------~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 185 DAFYIFEELSDKF----------------------------------------GSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp HHHHHHHHHHCCS------------------------------------------SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhcc----------------------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6666666655431 344555666666666677777777766
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHHHh
Q 013323 281 EMLKKDRKSPDVYIVMQNIRCYLHSGDI-DNGHKVFEDYIC 320 (445)
Q Consensus 281 ~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 320 (445)
.+..+.. +-|..+...+|......|+. +.+.+.+..+..
T Consensus 225 ~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 225 EEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6654332 12344555566666666655 445556665554
No 78
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.33 E-value=6.9e-06 Score=59.33 Aligned_cols=80 Identities=15% Similarity=0.332 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCC--------ChhHHHHHHHHHHHCCCCCCHHHH
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGV-QPTRDLFHSLIVGTMKGS--------RLQDTFFFRDQMKANGFLPDVAVY 114 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~ 114 (445)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+...+.+|++|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777888999999999999999999 999999999999877542 355678899999999999999999
Q ss_pred HHHHHHHHc
Q 013323 115 NYLISVCGK 123 (445)
Q Consensus 115 ~~ll~~~~~ 123 (445)
|.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999998765
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.29 E-value=0.0015 Score=64.69 Aligned_cols=140 Identities=4% Similarity=-0.027 Sum_probs=74.0
Q ss_pred HHhcCCCCChhhHH--HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHC
Q 013323 32 YARRNYANNASEYN--TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS----RLQDTFFFRDQMKAN 105 (445)
Q Consensus 32 ~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~ 105 (445)
|......|+-+.++ -+-..+...|+.+.+...|+...+.. +-+..|..+|-..|+..+ ..+.|..++....+.
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 34444456654443 34567777888888888887776642 223445555555555443 334444444444432
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH----HHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEE----MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 106 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
- +.|...|-.+-..+-. +++-.++.+|.. +...+-.+..+..|.+-......|++++|...|+....
T Consensus 410 ~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred c-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 2 2344455444444433 333333444432 23334445566666666666666666666666666544
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00066 Score=58.10 Aligned_cols=294 Identities=14% Similarity=0.083 Sum_probs=178.4
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL-IS 119 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~ 119 (445)
.-+++.|.-+.+..++++|.+++....+.. | +......|-..|-...++..|-..|+++...- |...-|..- -.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 346777888888999999999988776653 4 67777888888888899999999999988753 554444321 23
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH--cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA--AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
.+-+.+.+..|+++...|... |+...-..-+.+..+ .+++..+..+.++....| +..+.+..---..+.|..
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 445667788888888888752 333333333333333 567777777777665433 111111111112344544
Q ss_pred chHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHH
Q 013323 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 277 (445)
+.|.+-|+...+.+++++ ...||..+..|.+ |+.+.|.
T Consensus 161 --EaAvqkFqaAlqvsGyqp---------------------------------------llAYniALaHy~~-~qyasAL 198 (459)
T KOG4340|consen 161 --EAAVQKFQAALQVSGYQP---------------------------------------LLAYNLALAHYSS-RQYASAL 198 (459)
T ss_pred --HHHHHHHHHHHhhcCCCc---------------------------------------hhHHHHHHHHHhh-hhHHHHH
Confidence 677777766665554432 2358777766654 7778888
Q ss_pred HHHHHHHhCCCC-------------CCHH--------HHHHHHHH-------HHhcCChhhHHHHHHHHHhC-CCCCCHH
Q 013323 278 TLLEMLKKDRKS-------------PDVY--------IVMQNIRC-------YLHSGDIDNGHKVFEDYICS-EKFPPAE 328 (445)
Q Consensus 278 ~~~~~m~~~~~~-------------p~~~--------~~~~li~~-------~~~~g~~~~a~~~~~~m~~~-~~~p~~~ 328 (445)
+...++.+.|++ ||+. .-+.++.+ +.+.|+.+.|.+.+.+|..+ .-..|+.
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 888888776652 2211 12333333 35678888898888888765 4455666
Q ss_pred HHHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
|...+--.- .-.+-+. ..+-+.-+.+.+. ..+.||..++..|+ |..-++.|-.++.+=.
T Consensus 279 TLHN~Al~n--~~~~p~~--g~~KLqFLL~~nP-fP~ETFANlLllyC--KNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 279 TLHNQALMN--MDARPTE--GFEKLQFLLQQNP-FPPETFANLLLLYC--KNEYFDLAADVLAENA 337 (459)
T ss_pred hhhHHHHhc--ccCCccc--cHHHHHHHHhcCC-CChHHHHHHHHHHh--hhHHHhHHHHHHhhCc
Confidence 665543210 1122222 1222222333332 34568888777665 8888888888876543
No 81
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=2.3e-05 Score=72.31 Aligned_cols=125 Identities=8% Similarity=0.045 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH
Q 013323 70 DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN--GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147 (445)
Q Consensus 70 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 147 (445)
.+.+.+......+++.+....+++.+..++-..... ....-..|..++|+.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 455667888999999999999999999999888865 333334566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 194 (445)
|+|.+|..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999887777888888888877765
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.004 Score=56.96 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=90.7
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD-LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 116 (445)
..+...|-..+.+=.++..+..|..+|+..... -|-+. .|-..+..=-..|++..|.++|+.-.+ ..|+...|++
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~s 179 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLS 179 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHH
Confidence 456666666777777777888888888776653 23322 233334444455788888888877665 3588888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 117 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.|+.=.+-..++.|..+|++..- +.|+..+|--...-=-+.|+...+..+|....+
T Consensus 180 fI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88887777888888888887765 357777777777777777777777777776655
No 83
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0043 Score=57.00 Aligned_cols=53 Identities=4% Similarity=-0.063 Sum_probs=34.4
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPT-RDLFHSLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
.-|.++|++++|+..|.+-... .|| ..-|...-.+|...|+|+.+.+-=....
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 4566777888888888877663 466 4556666666677777776655443333
No 84
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.19 E-value=2e-05 Score=72.67 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=107.3
Q ss_pred CCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH
Q 013323 36 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD--GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113 (445)
Q Consensus 36 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 113 (445)
....+......+++.+....+++.+..++-..+.. ....-..|.+++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33556667777888888888999999999988875 3333345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHc
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 159 (445)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888778888988888888776
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00061 Score=58.32 Aligned_cols=292 Identities=10% Similarity=-0.035 Sum_probs=177.3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH-HHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC-LLNA 155 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~-li~~ 155 (445)
.-+.+.+..+.+..+++.|.+++..-.++. +.+....+.|-.+|-+..++..|-.-|+++... .|-..-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 345666666777788888888888777764 126677777888888888888888888888764 455544443 2345
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchh
Q 013323 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE 235 (445)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
+-+.+.+..|+.+...|... |+...-..-+.+-.+-...+.-.++.+.+....
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------------------------ 140 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------------------------ 140 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC------------------------
Confidence 56677788888887777653 222222222222222211122334444433221
Q ss_pred hhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 013323 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKV 314 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 314 (445)
..+..+.+..-...-+.|+++.|.+-|+...+. |..| ...||.-+ +..+.|+.+.|++.
T Consensus 141 ------------------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~ 200 (459)
T KOG4340|consen 141 ------------------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKH 200 (459)
T ss_pred ------------------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHH
Confidence 112223333334456789999999999987765 5555 55677544 45567899999999
Q ss_pred HHHHHhCCCC-------------CCHH--------HHHHHHHhHh---hcCChhhH-HHHHHHHHHHHhC-CCCCCcchh
Q 013323 315 FEDYICSEKF-------------PPAE--------LYATLVEGAM---FGYTPKGM-QLAQDTLVNMNSR-NIFLSPRMG 368 (445)
Q Consensus 315 ~~~m~~~~~~-------------p~~~--------~~~~li~~~~---~~~~~~g~-~~a~~~~~~m~~~-~~~p~~~~~ 368 (445)
..++.++|++ ||+. +-+.++.++- .-+.+.|. +.|.+-+-+|.-+ .-..|++|.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 9999987762 3322 2344444321 12345555 7788888888533 345688888
Q ss_pred hHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCC
Q 013323 369 SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDP 422 (445)
Q Consensus 369 ~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 422 (445)
..+...-. .+++.+..+-+.-+....- -..+||.-++--||+....+-|.
T Consensus 281 HN~Al~n~---~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 281 HNQALMNM---DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hHHHHhcc---cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHH
Confidence 77765553 4555444444444444332 35678888888888876655444
No 86
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.17 E-value=2.2e-06 Score=47.64 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=15.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYE 141 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 141 (445)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 87
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.13 E-value=4.7e-05 Score=62.30 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------------CHHHHHH
Q 013323 74 PTRDLFHSLIVGTM-----KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK----------------NSDQAIR 132 (445)
Q Consensus 74 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~a~~ 132 (445)
.|..+|..++..+. +.|..+-....+..|.+-|+.-|..+|+.||+.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 46667777766665 34777777788888888888888888888888776522 2345666
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHcCCh-hhHHHHHHHHHH
Q 013323 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQL-DPVYAIVRDMTA 174 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~-~~a~~~~~~m~~ 174 (445)
++++|...|+.||..|+..+++.+++.+.. .+...++-.|.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 777777777777777777777777665543 334444444433
No 88
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.12 E-value=3.9e-06 Score=46.60 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCC
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV 72 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 72 (445)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.09 E-value=0.004 Score=51.59 Aligned_cols=162 Identities=12% Similarity=-0.061 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 122 (445)
.--|--.|.+.|+...|..-+++-.+.. | +..+|..+-..|-+.|..+.|.+-|+...+.. +-+..+.|..-..+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3345567777888888888887777653 4 34467777777788888888888888777654 234566777777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 201 (445)
..|++++|...|++-.....-| -..||..+.-+..+.|+.+.|.+.|++-.+..- -...+.-.+.....+.|+. ..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y--~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDY--AP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccc--hH
Confidence 7888888888887776642212 255777777777788888888888877766421 1223344444444455544 44
Q ss_pred HHHHHHHHHH
Q 013323 202 ATKIIELVEQ 211 (445)
Q Consensus 202 a~~~~~~~~~ 211 (445)
|...++....
T Consensus 192 Ar~~~~~~~~ 201 (250)
T COG3063 192 ARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.08 E-value=7.3e-05 Score=66.38 Aligned_cols=248 Identities=10% Similarity=0.041 Sum_probs=117.3
Q ss_pred HHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 013323 51 LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 130 (445)
+.=.|++..++.-.+ .....-+.+......+.+++...|..+.+ ..++.+.. .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666664444 22221112233444555666666665543 33443333 45555554444333322333444
Q ss_pred HHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHH
Q 013323 131 IRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209 (445)
Q Consensus 131 ~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~ 209 (445)
..-+++....+..+ +.......-..+...|++++|++++..- .+.......+..+.+.++. +.|.+.++.|
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~--dlA~k~l~~~ 157 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRP--DLAEKELKNM 157 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-H--HHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 44333333222221 2222222223344467777777766532 2455555666666666665 6677777766
Q ss_pred HHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHh----cccHHHHHHHHHHHHh
Q 013323 210 EQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE----LKDVQAMETLLEMLKK 285 (445)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 285 (445)
.+.. .| .+...+..++.. .+.+.+|..+|+++.+
T Consensus 158 ~~~~-----------------------------------------eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 158 QQID-----------------------------------------ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD 195 (290)
T ss_dssp HCCS-----------------------------------------CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred HhcC-----------------------------------------Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 6431 12 122223333322 2346777777777654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH--HHHHHHHHHHHhC
Q 013323 286 DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM--QLAQDTLVNMNSR 359 (445)
Q Consensus 286 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~--~~a~~~~~~m~~~ 359 (445)
. ..++..+.|.+..++...|++++|.+++.+.....-. ++.+...++.+ ....|. +.+.+.+.++...
T Consensus 196 ~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~----~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 196 K-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVC----SLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHH----HHHTT-TCHHHHHHHHHCHHH
T ss_pred c-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHH----HHHhCCChhHHHHHHHHHHHh
Confidence 3 4556667777777777777777777777765544221 33333334331 222232 4556666666553
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.07 E-value=0.00059 Score=69.91 Aligned_cols=236 Identities=10% Similarity=0.062 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHccCCCchHHH
Q 013323 128 DQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLD---KFCYAGLITAHTNKIPRADDTA 202 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~~~~~~~~a 202 (445)
+.|.++-+.... .|| +..|-.-|.-....++.++|.++.++.... ++.-. ...|.++++.-...|. .+..
T Consensus 1442 esaeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~--eesl 1516 (1710)
T KOG1070|consen 1442 ESAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT--EESL 1516 (1710)
T ss_pred cCHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc--HHHH
Confidence 345554444443 244 567888888889999999999999888764 23222 2345555554444443 3788
Q ss_pred HHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 013323 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 282 (445)
.++|++..+- ......|..|..-|.+.+..++|-++++.
T Consensus 1517 ~kVFeRAcqy-----------------------------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~ 1555 (1710)
T KOG1070|consen 1517 KKVFERACQY-----------------------------------------CDAYTVHLKLLGIYEKSEKNDEADELLRL 1555 (1710)
T ss_pred HHHHHHHHHh-----------------------------------------cchHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 8899887763 22335688899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCC
Q 013323 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNI 361 (445)
Q Consensus 283 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~ 361 (445)
|.++ +.-...+|...+..+.+..+-+.|..++.+..+. -|...+...+=... .--.+.|+ +.+..+|+......
T Consensus 1556 m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA-qLEFk~GDaeRGRtlfEgll~ay- 1630 (1710)
T KOG1070|consen 1556 MLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA-QLEFKYGDAERGRTLFEGLLSAY- 1630 (1710)
T ss_pred HHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH-HHHhhcCCchhhHHHHHHHHhhC-
Confidence 9875 2256678888899999999999999999887765 23322222221110 02356777 88999999887764
Q ss_pred CCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHH--HHHHHHhhhhccC
Q 013323 362 FLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLP--AVEAYYNGLKDRE 416 (445)
Q Consensus 362 ~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~ 416 (445)
+--...|+..|.+-. ++|+.+.++.+|++....++.|-.- .|..+++-=.+.|
T Consensus 1631 PKRtDlW~VYid~ei--k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1631 PKRTDLWSVYIDMEI--KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred ccchhHHHHHHHHHH--ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 224578999999998 9999999999999999888877543 3444444333334
No 92
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0015 Score=59.77 Aligned_cols=226 Identities=13% Similarity=0.035 Sum_probs=161.3
Q ss_pred hcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 013323 53 SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 132 (445)
-.|+.-.|.+-|+...+..-.++ ..|..+-.+|.+..+.++.++.|+...+.+ +-|..+|..--..+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 35777888888888877543333 227777888999999999999999998865 2356677777777777889999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
=|++.....- -+...|--+--+.-|.+++++++..|++.+++ ++-.+.+|+..-..+...++. +.|.+.++.....
T Consensus 416 DF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF--d~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF--DKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH--HHHHHHHHHHHhh
Confidence 9999887431 23555666666667889999999999999886 444577888888888887766 8898888876654
Q ss_pred cCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHH-HHHHHHHHhcccHHHHHHHHHHHHhCCCCC-
Q 013323 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY-HVAFHACAELKDVQAMETLLEMLKKDRKSP- 290 (445)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 290 (445)
..-...+ ..+...+ +-.+-.+.-.+++..|.++++...+ +.|
T Consensus 492 E~~~~~~----------------------------------~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpk 535 (606)
T KOG0547|consen 492 EPREHLI----------------------------------IVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPK 535 (606)
T ss_pred ccccccc----------------------------------cccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCch
Confidence 3211100 0111111 1111111233889999999998776 445
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
....|..|-..-...|++++|+++|++-..
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445788899999999999999999997654
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0058 Score=54.94 Aligned_cols=149 Identities=9% Similarity=-0.034 Sum_probs=89.5
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCCh
Q 013323 265 HACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343 (445)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 343 (445)
..+...+++++|.--|..... +.| +...|.-|+..|...|++.+|.-+-+...+. ..-+..+.+.+ .+.......
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~-g~~V~~~dp 417 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF-GTLVLFPDP 417 (564)
T ss_pred HHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh-cceeeccCc
Confidence 345667788888877777654 454 6778888999998888888887766654443 12233333322 111114555
Q ss_pred hhHHHHHHHHHHHHhCCCCCCcc-hhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCC
Q 013323 344 KGMQLAQDTLVNMNSRNIFLSPR-MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDP 422 (445)
Q Consensus 344 ~g~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 422 (445)
.++++|.+++++-... .|+.. ..+.+...+. ..|..+.++.++++-.. ..||...-+.|-+-+.-.+.+.+++
T Consensus 418 ~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~--~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQ--VEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred hhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHH--hhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHH
Confidence 6668888877765543 24322 2222333343 77888888888877653 4567666666655555555554444
Q ss_pred c
Q 013323 423 R 423 (445)
Q Consensus 423 ~ 423 (445)
.
T Consensus 492 ~ 492 (564)
T KOG1174|consen 492 E 492 (564)
T ss_pred H
Confidence 3
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00039 Score=67.37 Aligned_cols=317 Identities=13% Similarity=0.096 Sum_probs=184.2
Q ss_pred ceeecchHHHHHHhcCC--CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHhcC
Q 013323 21 RFFVTSAGAEEYARRNY--ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-G--------VQPTRDLFHSLIVGTMKG 89 (445)
Q Consensus 21 ~~~~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~~~~~ll~~~~~~ 89 (445)
.+|+. .|..+++-+.+ -.+-..|..+.+.|.+..+++-|.-.+-.|.+. | -.|+ .+=..+--.....
T Consensus 736 Sfyvt-iG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 736 SFYVT-IGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred eEEEE-eccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 34444 47778877766 478889999999999999999998888887652 1 1232 2222222234567
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHH
Q 013323 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169 (445)
Q Consensus 90 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~ 169 (445)
|.+++|+.+|.+.+..+ .|=+.|-..|.+++|+++-+.--.--+ ..||..-..-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 89999999999888743 233455568899999988765433222 245555555556677788877777
Q ss_pred HHHHHcCC-------------------CCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhc
Q 013323 170 RDMTAAGA-------------------GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM 230 (445)
Q Consensus 170 ~~m~~~g~-------------------~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (445)
++-....+ ..|...|...-..+-..|+. +.|..+++..+
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem--daAl~~Y~~A~-------------------- 939 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM--DAALSFYSSAK-------------------- 939 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch--HHHHHHHHHhh--------------------
Confidence 65321100 01222222222222223322 33333333222
Q ss_pred ccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 013323 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310 (445)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 310 (445)
-|-+++...|-.|+.++|-+|-++- -|....-.|-+.|-..|++.+
T Consensus 940 ----------------------------D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 940 ----------------------------DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred ----------------------------hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHH
Confidence 2556666677788888888887652 244444458888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH----------------HHHHHHHHHHHhCCCCCCcchhhHHHHH
Q 013323 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM----------------QLAQDTLVNMNSRNIFLSPRMGSDLLLV 374 (445)
Q Consensus 311 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~----------------~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 374 (445)
|...|.+.. +|...|+ -|..++. -.|...|++ .|.. +...+..
T Consensus 986 Av~FfTrAq---------afsnAIR----lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmL 1044 (1416)
T KOG3617|consen 986 AVKFFTRAQ---------AFSNAIR----LCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVML 1044 (1416)
T ss_pred HHHHHHHHH---------HHHHHHH----HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHH
Confidence 999988653 3444444 1222222 223333332 2221 1122233
Q ss_pred hhcccCCChhhHHHHHH---------HHH-HCCCCCCHHHHHHHHhhhhccCCCCCCCchhhhhhc
Q 013323 375 AAGEKSGGYTTANYIWD---------LMQ-ARKITPSLPAVEAYYNGLKDREVPADDPRLVVVSRA 430 (445)
Q Consensus 375 ~~~~~~g~~~~A~~~~~---------~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~~~ 430 (445)
|- |.|.+.+|.++-- -+. +.+-..|+...+.-.+=+++....++|+.+|-.-++
T Consensus 1045 YH--kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1045 YH--KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HH--hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44 8888888876622 121 233345676666666667777777777776655443
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.01 E-value=0.0059 Score=50.60 Aligned_cols=128 Identities=11% Similarity=-0.057 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
..-|--+|...|+...|..-+++..+.. +-+..+|..+-..|-+.|+.+.|.+-|+.-.+.. +-+..+.|..-.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444456667777777777777777654 1234567777777777777777777777666542 1234555666666667
Q ss_pred cCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 159 AGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
.|++++|...|++......-| -..||..+--+..+.|.. +.++..++.-.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~--~~A~~~l~raL 166 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF--DQAEEYLKRAL 166 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc--hhHHHHHHHHH
Confidence 777777777777766642211 123333333333444443 45555554433
No 96
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.99 E-value=0.0002 Score=58.68 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=90.6
Q ss_pred chHHHHHHhcC--CCCChhhHHHHHHHHHhc-----CcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC---------
Q 013323 26 SAGAEEYARRN--YANNASEYNTVVTSLTSQ-----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG--------- 89 (445)
Q Consensus 26 ~~~~~~~~~~~--~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------- 89 (445)
..+.++..++. -..|..+|..+|..|.+. |.++=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 44555555554 578999999999999865 67777788889999999999999999999997653
Q ss_pred -------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHH
Q 013323 90 -------SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMK 138 (445)
Q Consensus 90 -------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~ 138 (445)
.+.+-|.+++++|...|+-||..|+..|++.+++.+.. .+..++.--|.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999988764 34444444443
No 97
>PLN02789 farnesyltranstransferase
Probab=97.95 E-value=0.014 Score=52.80 Aligned_cols=216 Identities=8% Similarity=0.015 Sum_probs=142.6
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD-LFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
++..+-..+...++.++|+.+.++..+. .|+.. .|+.--.++...| ++++++..++.+.+.+- -+..+|+..--.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 4555666677788999999999999875 36544 4655545555556 68999999999998652 355678766555
Q ss_pred HHccCC--HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---C
Q 013323 121 CGKCKN--SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK---I 195 (445)
Q Consensus 121 ~~~~g~--~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~ 195 (445)
+.+.|+ .++++.+++.+.+... -|..+|+.....+.+.|+++++++.++++.+.+.. +...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 556665 3678899988887653 47889999999999999999999999999987643 455555544444333 1
Q ss_pred CCc--hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhc---
Q 013323 196 PRA--DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL--- 270 (445)
Q Consensus 196 ~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~--- 270 (445)
... .+............ .+.|...|+.+-..+...
T Consensus 194 ~~~~~~e~el~y~~~aI~~----------------------------------------~P~N~SaW~Yl~~ll~~~~~~ 233 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILA----------------------------------------NPRNESPWRYLRGLFKDDKEA 233 (320)
T ss_pred cccccHHHHHHHHHHHHHh----------------------------------------CCCCcCHHHHHHHHHhcCCcc
Confidence 110 11122222111111 156677788777777763
Q ss_pred -ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013323 271 -KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH 304 (445)
Q Consensus 271 -g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 304 (445)
+...+|..++....+.+ ..+......|+..|+.
T Consensus 234 l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 234 LVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 33456777777765532 2356677777887775
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.91 E-value=0.023 Score=54.22 Aligned_cols=349 Identities=13% Similarity=0.094 Sum_probs=173.6
Q ss_pred HHHHHHhcCCC---CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 013323 28 GAEEYARRNYA---NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104 (445)
Q Consensus 28 ~~~~~~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (445)
-+.+..+.|++ .+.+.|+.+=-.+-...++++|...|......+ +-|...|.-+--.-++.++++........+.+
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34455555553 566778877777777788999999888876643 12333343333333333344433333333333
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCccHHHH----------------------------------
Q 013323 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTY---------------------------------- 149 (445)
Q Consensus 105 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~y---------------------------------- 149 (445)
.. +.....|..+..++.-.|+...|..+.++..+.. -.|+...|
T Consensus 138 l~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~ 216 (700)
T KOG1156|consen 138 LR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV 216 (700)
T ss_pred hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH
Confidence 21 1122334444444444444444444444433321 11222222
Q ss_pred ------HHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCCCchHHHHHHHHHHHHhcCCccccccc
Q 013323 150 ------VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT-AHTNKIPRADDTATKIIELVEQSKGWSSVETSG 222 (445)
Q Consensus 150 ------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 222 (445)
.+--.-+.+.+++++|..++..+...+ ||..-|...+. ++.+..+ ..+....+++.....- +......
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d-~~~~lk~ly~~ls~~y--~r~e~p~ 291 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKD-MLEALKALYAILSEKY--PRHECPR 291 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhcC--cccccch
Confidence 223344567788888888888888874 77766665554 4432211 1233446666555432 1112222
Q ss_pred cccchhhcccchhhhcchhhhhH-HhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC--CC-----------
Q 013323 223 NNAENEMMGVSKEELYNLPTAEY-VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD--RK----------- 288 (445)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----------- 288 (445)
........+..... ...... ..-+.|+ +.++..+..-+-.....+-.+++.-.+... |-
T Consensus 292 Rlplsvl~~eel~~---~vdkyL~~~l~Kg~----p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 292 RLPLSVLNGEELKE---IVDKYLRPLLSKGV----PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred hccHHHhCcchhHH---HHHHHHHHHhhcCC----CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 22223322211111 111111 1111222 124555555555444433333333333221 11
Q ss_pred -CCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCC
Q 013323 289 -SPDVY--IVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLS 364 (445)
Q Consensus 289 -~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~ 364 (445)
+|.+. |+--++..|-+.|+++.|..+.+....+ .|+..-.- ++++- -+...|. +.|...+++..+.+. ||
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly-~~KaR--I~kH~G~l~eAa~~l~ea~elD~-aD 438 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELY-LVKAR--IFKHAGLLDEAAAWLDEAQELDT-AD 438 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHH-HHHHH--HHHhcCChHHHHHHHHHHHhccc-hh
Confidence 34443 4555677788888999998888877765 23322111 11111 3566777 888888888877662 34
Q ss_pred cchhhHHHHHhhcccCCChhhHHHHHHHHHHCCC
Q 013323 365 PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI 398 (445)
Q Consensus 365 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~ 398 (445)
...-.--..- ..++...++|.++.....+.|.
T Consensus 439 R~INsKcAKY--mLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 439 RAINSKCAKY--MLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHH--HHHccccHHHHHHHHHhhhccc
Confidence 3221111111 1267888888888888887765
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.90 E-value=0.021 Score=53.36 Aligned_cols=129 Identities=11% Similarity=0.138 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYATLVE 335 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 335 (445)
-+|-..|..-.+...+..|..+|.+..+.+..+ ++++++++|.-|| .++.+.|.++|+.=... |- ++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence 358888999999999999999999999988777 8889999998777 56789999999974443 32 2233334444
Q ss_pred hHhhcCChhhH-HHHHHHHHHHHhCCCCCCc--chhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 336 GAMFGYTPKGM-QLAQDTLVNMNSRNIFLSP--RMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 336 ~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
- +..-+. ..+..+|++...+++.|+. ..|..+|.--+ .-|+...+.++-+++..
T Consensus 444 f----L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES--~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 F----LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES--NVGDLNSILKLEKRRFT 500 (656)
T ss_pred H----HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH--hcccHHHHHHHHHHHHH
Confidence 2 344555 8899999999998766655 58999998777 99999999999888863
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.89 E-value=0.003 Score=54.75 Aligned_cols=183 Identities=8% Similarity=0.010 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-cc-HHHH
Q 013323 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD----VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK-PN-GQTY 149 (445)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~y 149 (445)
...+-.+...+.+.|+++.|...|+++.+.. |+ ..++..+..++.+.|++++|...++++.+..-. |. ..++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3445555556667777777777777766543 32 135566666777777777777777777653211 11 1123
Q ss_pred HHHHHHHHHc--------CChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccc
Q 013323 150 VCLLNACAAA--------GQLDPVYAIVRDMTAAGAGLDK-FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220 (445)
Q Consensus 150 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 220 (445)
..+-.++... |+.++|.+.|+...... |+. ..+..+.. ... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~-~~~-----------~~~~~~---------- 166 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKR-MDY-----------LRNRLA---------- 166 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHH-HHH-----------HHHHHH----------
Confidence 3333333332 55667777777766542 222 11111110 000 000000
Q ss_pred cccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCC-CC-CHHHHHHH
Q 013323 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK-SP-DVYIVMQN 298 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~l 298 (445)
.....+-..+.+.|++++|...+....+..- .| ....+..+
T Consensus 167 -------------------------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 167 -------------------------------------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred -------------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 0011344557788889999888888776421 23 34577788
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC
Q 013323 299 IRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
..++.+.|+.++|..+++.+...
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999888887654
No 101
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00067 Score=62.51 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 124 (445)
..|+..+...++++.|.++|+++.+.. |+.. ..+...+...++..+|.+++++..+.. +-|....+.-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344566666788999999999988764 6543 346666767778888888888887643 34666777777778889
Q ss_pred CCHHHHHHHHHHHHhCCCCccH-HHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 125 KNSDQAIRIFEEMKKYEVKPNG-QTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
++++.|+.+.++..+. .|+. .+|..|..+|...|+++.|+..++.+..
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999988875 4554 5899999999999999999988887754
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.83 E-value=0.0037 Score=54.22 Aligned_cols=167 Identities=11% Similarity=0.046 Sum_probs=123.6
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH--
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR----DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV-- 111 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-- 111 (445)
......+-.+...+.+.|+++.|...|++..+.. |+. ..+..+-.++.+.|++++|...++.+.+.. |+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCc
Confidence 4456677788888999999999999999987753 432 356677788899999999999999998754 321
Q ss_pred --HHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCccHH-HH-----------------HHHHHHHHHcCChh
Q 013323 112 --AVYNYLISVCGKC--------KNSDQAIRIFEEMKKYEVKPNGQ-TY-----------------VCLLNACAAAGQLD 163 (445)
Q Consensus 112 --~~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-~y-----------------~~li~~~~~~g~~~ 163 (445)
.++..+-.++.+. |+.++|.+.|+...... |+.. .+ ..+-..+.+.|+++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 2344444455544 77899999999987652 3321 11 13445678889999
Q ss_pred hHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 164 PVYAIVRDMTAAG--AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 164 ~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
+|...++...+.. -+.....+..+..++.+.|+. +.+...++.+...
T Consensus 184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~--~~A~~~~~~l~~~ 232 (235)
T TIGR03302 184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGLK--DLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhh
Confidence 9999999998763 122456788888999999977 8888888887654
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.003 Score=60.77 Aligned_cols=228 Identities=14% Similarity=0.069 Sum_probs=154.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 194 (445)
-.+-..+...|-...|..+|++.. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456667778888999999998775 5899999999999999999999888883 68888888887766443
Q ss_pred CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHH
Q 013323 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274 (445)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 274 (445)
.- .+.|+.+........ . ..+-....+.++++
T Consensus 471 s~--yEkawElsn~~sarA---------------------------------~-------------r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 471 SL--YEKAWELSNYISARA---------------------------------Q-------------RSLALLILSNKDFS 502 (777)
T ss_pred HH--HHHHHHHhhhhhHHH---------------------------------H-------------HhhccccccchhHH
Confidence 22 255555555433220 0 00000112257788
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHhHhhcCChhhH-HHHHH
Q 013323 275 AMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP-PAELYATLVEGAMFGYTPKGM-QLAQD 351 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~g~-~~a~~ 351 (445)
++.+.|+.-.+ +.| -..+|-.+=.+..+.++++.|.+.|..-... .| +...||.+=. +|.+.+. .+|..
T Consensus 503 ~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~----ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 503 EADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLST----AYIRLKKKKRAFR 574 (777)
T ss_pred HHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhH----HHHHHhhhHHHHH
Confidence 88888875433 222 3345655666677888999999988876654 33 5667888877 6888888 89999
Q ss_pred HHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCC-CCCCHHHHHHHHhhh
Q 013323 352 TLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK-ITPSLPAVEAYYNGL 412 (445)
Q Consensus 352 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~ 412 (445)
.+.+..+.+.. +...|...+.... +.|.+++|.+.+.+|.+.. -.-|......++...
T Consensus 575 ~l~EAlKcn~~-~w~iWENymlvsv--dvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 575 KLKEALKCNYQ-HWQIWENYMLVSV--DVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHhhcCCC-CCeeeechhhhhh--hcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 99998888743 4445544444555 8999999999998887421 112444444444443
No 104
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.79 E-value=0.037 Score=52.87 Aligned_cols=142 Identities=9% Similarity=0.034 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC------CCCCCHHHHHHH
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN------GFLPDVAVYNYL 117 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~l 117 (445)
|...|......+-.+-+..++++..+ .+...-+-.|.-+++.+++++|-+.+...... ..+.+...|+-+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 33333333334444444444444432 12222344444455555666655555554321 112344445555
Q ss_pred HHHHHccCCHH---HHHHHHHHHHhCCCCcc--HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 013323 118 ISVCGKCKNSD---QAIRIFEEMKKYEVKPN--GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192 (445)
Q Consensus 118 l~~~~~~g~~~---~a~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 192 (445)
-+..++..+.- ....+++.+... -+| ...|++|..-|.+.|.+++|.++|++-... ..++.-|+.+.++|+
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 44444443321 222333333321 234 346999999999999999999999987765 235555666666665
Q ss_pred c
Q 013323 193 N 193 (445)
Q Consensus 193 ~ 193 (445)
.
T Consensus 293 ~ 293 (835)
T KOG2047|consen 293 Q 293 (835)
T ss_pred H
Confidence 4
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.79 E-value=0.0011 Score=52.40 Aligned_cols=93 Identities=5% Similarity=-0.123 Sum_probs=58.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC
Q 013323 81 SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160 (445)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 160 (445)
.+-..+...|++++|...|+...... +.+...|..+-.++.+.|++++|...|+...... +.+...+..+-.++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445566666666666666666544 2355666666666666667777776666666543 235566666666666667
Q ss_pred ChhhHHHHHHHHHHc
Q 013323 161 QLDPVYAIVRDMTAA 175 (445)
Q Consensus 161 ~~~~a~~~~~~m~~~ 175 (445)
++++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777666666553
No 106
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0058 Score=51.75 Aligned_cols=172 Identities=13% Similarity=0.009 Sum_probs=121.8
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 013323 29 AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108 (445)
Q Consensus 29 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 108 (445)
.+.++.+...-+...-..-...|...+++++|+...+.. -+......=+..+.+..+++.|.+.++.|.+-
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 344444444444444444456788899999999887762 23344444445566778999999999999984
Q ss_pred CCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHH
Q 013323 109 PDVAVYNYLISVCG----KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184 (445)
Q Consensus 109 p~~~~~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 184 (445)
-+..|.+-|-.++. ..+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++...+.-. +..|.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 35556665555554 456789999999999874 4689999999999999999999999999999887533 56666
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 185 AGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 185 ~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
..+|..-...|+ +.+...+....+...
T Consensus 245 ~Nliv~a~~~Gk-d~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 245 ANLIVLALHLGK-DAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHhCC-ChHHHHHHHHHHHhc
Confidence 666666555665 335556666666554
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.74 E-value=0.0014 Score=51.78 Aligned_cols=115 Identities=6% Similarity=-0.108 Sum_probs=92.7
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC
Q 013323 30 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP 109 (445)
Q Consensus 30 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 109 (445)
++..++.+.-++..+..+-..+.+.|++++|...|+...... +.+...|..+-.++.+.|++++|...|+...+.+ +.
T Consensus 13 ~~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-AS 90 (144)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 344455555555556677888899999999999999988764 2467788888899999999999999999999865 35
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT 148 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 148 (445)
+...+..+-.++.+.|++++|...|+..... .|+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~ 127 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADAS 127 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 7888999999999999999999999998874 455433
No 108
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.71 E-value=0.05 Score=52.05 Aligned_cols=135 Identities=6% Similarity=0.008 Sum_probs=100.8
Q ss_pred HhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 013323 52 TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 131 (445)
...|+-++|.+....-.+..+ -+.+.|+.+--.+....++++|.+.|......+ +-|...|--|--.=++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 445777888877766555443 366778888777888889999999999988865 346777777776677888888888
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLIT 189 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~ 189 (445)
.......+.. ......|.....++.-.|+...|..++++..+.. -.|+...|.-...
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 7777776642 1245678889999999999999999999998864 3567766655443
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.69 E-value=0.054 Score=57.32 Aligned_cols=301 Identities=9% Similarity=-0.027 Sum_probs=155.5
Q ss_pred HHhcCCChhHHHHHHHHHHHC--CC----CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc----HHHHHHH
Q 013323 85 GTMKGSRLQDTFFFRDQMKAN--GF----LPDV--AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN----GQTYVCL 152 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~--g~----~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~y~~l 152 (445)
.+...|+++++..+++..... .. .+.. .....+-..+...|++++|...+++....--..+ ...++.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 345667888888877766542 10 1111 1112222344567888888888887654211111 1234555
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccch
Q 013323 153 LNACAAAGQLDPVYAIVRDMTAAG--A-GLD--KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227 (445)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (445)
-..+...|++++|...+++..... . .+. ..++..+-..+...|+. +.+...++......
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~al~~~-------------- 561 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL--QAAYETQEKAFQLI-------------- 561 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHH--------------
Confidence 556677888888888887775421 1 111 12333334445556655 67776666543321
Q ss_pred hhcccchhhhcchhhhhHHhhhcCcc--cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHH
Q 013323 228 EMMGVSKEELYNLPTAEYVHRRGGFL--SRLLTVYHVAFHACAELKDVQAMETLLEMLKKD--RKSP--DVYIVMQNIRC 301 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~ 301 (445)
...|.. ......+..+-..+...|++++|...+.+.... ...+ ....+..+...
T Consensus 562 --------------------~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 562 --------------------EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred --------------------HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 000000 111223344445566679999998888765442 1112 23344445567
Q ss_pred HHhcCChhhHHHHHHHHHhCC-CCCCHHHHHHHHH-hHhhcCChhhH-HHHHHHHHHHHhCCCCCCcch----hhHHHHH
Q 013323 302 YLHSGDIDNGHKVFEDYICSE-KFPPAELYATLVE-GAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRM----GSDLLLV 374 (445)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~-~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~----~~~ll~~ 374 (445)
+...|+.+.|.+.++...... .......+..... .....+...|. +.|...+......... .... +..+..+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA-NNHFLQGQWRNIARA 700 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc-cchhHHHHHHHHHHH
Confidence 778899999998888775421 0111111111100 00001233455 7777776665432211 1111 1222233
Q ss_pred hhcccCCChhhHHHHHHHHHH----CCCCCC-HHHHHHHHhhhhccCCCCCCCch
Q 013323 375 AAGEKSGGYTTANYIWDLMQA----RKITPS-LPAVEAYYNGLKDREVPADDPRL 424 (445)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 424 (445)
+ ...|++++|...+++... .|..++ ..+...+-.++.+.|..++|...
T Consensus 701 ~--~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 701 Q--ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred H--HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3 378899999888888763 233322 12344444567777877777653
No 110
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0059 Score=53.75 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH-Hc-cCCC-chHHHHHHHHHHHHhc
Q 013323 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH-TN-KIPR-ADDTATKIIELVEQSK 213 (445)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~-~~~~-~~~~a~~~~~~~~~~~ 213 (445)
.++--|.+.+++.+|..+.+++.- ..|-......++.+- +. .|.. ....|++.|+.+..+.
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 344456677777777776665432 234444444444332 11 1111 1244555666555443
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.057 Score=51.11 Aligned_cols=118 Identities=9% Similarity=0.110 Sum_probs=80.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHH--c
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY--LISVCG--K 123 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~--~ 123 (445)
++-+...+++++|....+.+...+ +-|...+..=+-+..+.+.+++|+.+.+ ..+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc---hhhhcchhhHHHHHHHHH
Confidence 566677889999999999987765 3344456666667788888888874433 222 1122222 244554 6
Q ss_pred cCCHHHHHHHHHHHHhCCCCccH-HHHHHHHHHHHHcCChhhHHHHHHHHHHcCC
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPNG-QTYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 177 (445)
.+..++|+..++ |..++. .+...--+.+-+.|++++|+++|+.+.+.+.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 788899998888 333433 3566666778889999999999999987654
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0031 Score=49.99 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCH-H-HH--HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH--HHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR-D-LF--HSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV--AVY 114 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~-~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 114 (445)
...|..++..+ ..++...+...++.+.+.. |+. . .. -.+-..+...|++++|...|+......-.|+. ...
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 34566777776 4888888888888888763 333 2 22 23335677889999999999999987622322 234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHH
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD 171 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 171 (445)
-.|-..+...|++++|+..++...... .....+...-..+.+.|+.++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 446677888999999999997754433 3455677788889999999999998875
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.63 E-value=0.0046 Score=51.75 Aligned_cols=120 Identities=8% Similarity=0.019 Sum_probs=89.5
Q ss_pred cCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 013323 54 QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC-GKCKN--SDQA 130 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~--~~~a 130 (445)
.++.+++...++...+.+ +.|...|..+-..+...|++++|...|+...+.. +-+...+..+-.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666555543 3467778888888889999999999999888865 23667777777764 56676 4889
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
.+++++..+.+- -+..++..+-..+.+.|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999998887642 266788888888889999999999999988753
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.61 E-value=0.0087 Score=57.76 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=61.0
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCHHHHHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE-KFPPAELYAT 332 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ 332 (445)
+.+...||.+-.+|.+.++-.+|...+.+..+.+ .-+-..|...+....+.|.+++|.+.+..+.... ..-|..+-..
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~ 628 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLI 628 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHH
Confidence 5566789999999999999999999988877765 3344566667777788999999999988877552 1225556666
Q ss_pred HHHhH
Q 013323 333 LVEGA 337 (445)
Q Consensus 333 li~~~ 337 (445)
++...
T Consensus 629 iv~~~ 633 (777)
T KOG1128|consen 629 IVRTV 633 (777)
T ss_pred HHHHH
Confidence 65543
No 115
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.066 Score=50.40 Aligned_cols=285 Identities=12% Similarity=0.020 Sum_probs=168.2
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
..+++.--.-..-+-..+++.+..++++...+. .+++...+..=|..+-..|+..+-..+=..|.+.- +-...+|=++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 445555556667777889999999999888764 34566666666777778888777777766777642 3456788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHc
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAA--GA-GLDKFCYAGLITAHTN 193 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~-~p~~~~~~~li~~~~~ 193 (445)
---|.-.|+..+|.++|.+-..- .|. ...|-..-..|.-.|..|+|...+...-+- |. .|.. |..+= |.+
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Ylgme--y~~ 392 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--YLGME--YMR 392 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--HHHHH--HHH
Confidence 88888889999999999877643 222 346777778888888888888888776552 32 2322 22221 222
Q ss_pred cCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhH-HhhhcCcccCchhHHHHHHHHHHhccc
Q 013323 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY-VHRRGGFLSRLLTVYHVAFHACAELKD 272 (445)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~li~~~~~~g~ 272 (445)
.+.. +.|.+.|..........+..-............-.++..-+..... .............+++.+-++|.+.+.
T Consensus 393 t~n~--kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNL--KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccH--HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 2222 6666666654433221111111100000000000010000000000 000000001234557777777777888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 273 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
.++|...++..... .+-|..+|.++--.|...|+++.|.+.|++... +.|+-.+...++.
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 88887777766543 233667777777777778888888887775443 5677766666666
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.59 E-value=0.0065 Score=60.72 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=116.8
Q ss_pred hcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH
Q 013323 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD-LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112 (445)
Q Consensus 34 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 112 (445)
.+.+..++..+-.|-....+.|+.++|..+++...+. .|+.. ....+..++.+.+++++|....++..... +-+..
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~ 155 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAR 155 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHH
Confidence 3455677888989999999999999999999999874 57655 46778889999999999999999999876 23466
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
..+.+-.++.+.|++++|..+|++....+ .-+..++...-..+-..|+.++|...|+...+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77778888899999999999999999733 234788999999999999999999999998764
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.073 Score=50.42 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhc--ccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHH--------HHHhCCCCCC
Q 013323 259 VYHVAFHACAEL--KDVQAMETLLEMLKKDRKSPD--VYIVMQNIRCYLHSGDIDNGHKVFE--------DYICSEKFPP 326 (445)
Q Consensus 259 ~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~--------~m~~~~~~p~ 326 (445)
.+..++..+.+. .....+..++...-+. .|. ..+.-.++......|+++.|.+++. .+.+.+..|.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 345555554433 2356666666655443 232 3345556677788999999999999 5555566666
Q ss_pred HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCC--CCCCcchhhHHHHHhh--cccCCChhhHHHHHHHHHHCCCCCC
Q 013323 327 AELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRN--IFLSPRMGSDLLLVAA--GEKSGGYTTANYIWDLMQARKITPS 401 (445)
Q Consensus 327 ~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~--~~~~g~~~~A~~~~~~m~~~~~~p~ 401 (445)
.+.+-.-+. .+.+. +.|..++++....- -.+.......++.-.+ -.+.|+.++|..+++++.+.. ++|
T Consensus 419 ~V~aiv~l~------~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d 491 (652)
T KOG2376|consen 419 TVGAIVALY------YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PND 491 (652)
T ss_pred HHHHHHHHH------HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-Cch
Confidence 665544443 33333 55666665544221 0111122222221111 237799999999999998654 578
Q ss_pred HHHHHHHHhhhhccC
Q 013323 402 LPAVEAYYNGLKDRE 416 (445)
Q Consensus 402 ~~~~~~l~~~~~~~~ 416 (445)
..+...++-+|++..
T Consensus 492 ~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 492 TDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888877643
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.57 E-value=0.059 Score=54.09 Aligned_cols=162 Identities=7% Similarity=0.044 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH-HHH
Q 013323 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK-FCY 184 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~ 184 (445)
...+...+-.|-....+.|.+++|+.+++...+. .|| ......+...+.+.+++++|+...++..... |+. ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHH
Confidence 3445777777777778888888888888887764 455 4456667777778888888888888877753 443 334
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHH
Q 013323 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264 (445)
Q Consensus 185 ~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li 264 (445)
..+-.++...|+. ++|..+|+.+.... +.+..++.++-
T Consensus 158 ~~~a~~l~~~g~~--~~A~~~y~~~~~~~----------------------------------------p~~~~~~~~~a 195 (694)
T PRK15179 158 LLEAKSWDEIGQS--EQADACFERLSRQH----------------------------------------PEFENGYVGWA 195 (694)
T ss_pred HHHHHHHHHhcch--HHHHHHHHHHHhcC----------------------------------------CCcHHHHHHHH
Confidence 4444556666766 77777777766421 33456677777
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.++-+.|+.++|...|+...+. ..|...-|+.++ +++..-...++++.-.
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHcCcc
Confidence 7777778888887777766543 234555555443 2334445555555544
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.53 E-value=0.16 Score=53.82 Aligned_cols=311 Identities=11% Similarity=-0.038 Sum_probs=177.5
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHC--CC----CCCHHH--HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLD--GV----QPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD----VAV 113 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~--g~----~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~ 113 (445)
.....+...|+++++...+...... .. .|.... ...+-..+...|++++|...+++..+.--..+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3344556778999999888876542 11 111111 11222345678999999999998776311112 234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CccHHHHHHHHHHHHHcCChhhHHHHHHHHHH----cCCC--C-CH
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKY----EV-KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA----AGAG--L-DK 181 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p-~~ 181 (445)
.+.+-..+...|++++|...+++.... |- .+-..++..+-..+...|++++|...+++... .|.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 566666778899999999999887642 11 11233455666778889999999999888654 2321 1 12
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHH
Q 013323 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261 (445)
Q Consensus 182 ~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 261 (445)
..+..+-..+...|+. +.+...++.......- .+. ......+.
T Consensus 574 ~~~~~la~~~~~~G~~--~~A~~~~~~al~~~~~----------------------------------~~~-~~~~~~~~ 616 (903)
T PRK04841 574 FLLRIRAQLLWEWARL--DEAEQCARKGLEVLSN----------------------------------YQP-QQQLQCLA 616 (903)
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHhHHhhhc----------------------------------cCc-hHHHHHHH
Confidence 2333333445555765 7777776654332100 000 11123444
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhC----CCCCCH-HHH-HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKD----RKSPDV-YIV-MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
.+.......|+.+.|...+...... +..+.. ... ...+..+...|+.+.|.+++........... ........
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~~~~ 695 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN-HFLQGQWR 695 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc-hhHHHHHH
Confidence 5566677889999999988876432 111111 111 1123445568999999999877554321111 11100111
Q ss_pred hHhhcCChhhH-HHHHHHHHHHHhC----CCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 336 GAMFGYTPKGM-QLAQDTLVNMNSR----NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 336 ~~~~~~~~~g~-~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
.+...+...|. ++|...+++.... |..+ ......++.+..+.+.|+.++|...+.+..+
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~-~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMS-DLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11114566666 8888888876643 2222 1222233333445599999999999988875
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.52 E-value=0.0039 Score=48.66 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 157 (445)
....+...+...|+.++|...|+.....+ +.+...|..+-..+.+.|++++|..+|+.....+ +.+..++..+-..+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34445556667777777777777776654 2356677777777777777777777777766543 335566666677777
Q ss_pred HcCChhhHHHHHHHHHHc
Q 013323 158 AAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 158 ~~g~~~~a~~~~~~m~~~ 175 (445)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777888887777777664
No 121
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.51 E-value=0.0017 Score=49.56 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKK---------------DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
|..++..+|.++++.|+++....+++..-. ..+.|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456789999999999999999999876532 13568899999999999999999999999999988
Q ss_pred C-CCCCCHHHHHHHHHh
Q 013323 321 S-EKFPPAELYATLVEG 336 (445)
Q Consensus 321 ~-~~~p~~~~~~~li~~ 336 (445)
. ++..+..+|..|++-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 8 888899999999984
No 122
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.024 Score=50.12 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhh
Q 013323 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGS 369 (445)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~ 369 (445)
|.+.|| +..+++..|++.+|+++|-.+....++ |..+|.+++.- .|.+++. +.|++++-++ +-+.+..+.-
T Consensus 393 D~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LAr---Cyi~nkkP~lAW~~~lk~---~t~~e~fsLL 464 (557)
T KOG3785|consen 393 DDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLAR---CYIRNKKPQLAWDMMLKT---NTPSERFSLL 464 (557)
T ss_pred chhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHH---HHHhcCCchHHHHHHHhc---CCchhHHHHH
Confidence 344444 567777888899999999877666555 66677766653 3677777 7777765444 3222333333
Q ss_pred HHH-HHhhcccCCChhhHHHHHHHHHHCCCCCCHHH-------HHHHHhhhhc
Q 013323 370 DLL-LVAAGEKSGGYTTANYIWDLMQARKITPSLPA-------VEAYYNGLKD 414 (445)
Q Consensus 370 ~ll-~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~l~~~~~~ 414 (445)
.+| ..|- +++.+=-|-+.|+.+...+ |+++- ...++..++.
T Consensus 465 qlIAn~CY--k~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG~f~~l~~ 513 (557)
T KOG3785|consen 465 QLIANDCY--KANEFYYAAKAFDELEILD--PTPENWEGKRGACAGLFRQLAN 513 (557)
T ss_pred HHHHHHHH--HHHHHHHHHHhhhHHHccC--CCccccCCccchHHHHHHHHHc
Confidence 333 3343 8888888888888887543 55444 3445555544
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.50 E-value=0.045 Score=45.86 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCCchHHH
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH-TNKIPRADDTA 202 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~~~a 202 (445)
.++.+++...++...... +.|...|..+-..|...|++++|...|+...+..- -+...+..+-.++ ...|+...+.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556655555555433 34566677777777777777777777776666431 1344444444432 34443222555
Q ss_pred HHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHH
Q 013323 203 TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEM 282 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 282 (445)
.++++...+.. +.+...+..+-..+.+.|++++|...|+.
T Consensus 130 ~~~l~~al~~d----------------------------------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 130 REMIDKALALD----------------------------------------ANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHhC----------------------------------------CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554432 33445566666666677777777777777
Q ss_pred HHhC
Q 013323 283 LKKD 286 (445)
Q Consensus 283 m~~~ 286 (445)
+.+.
T Consensus 170 aL~l 173 (198)
T PRK10370 170 VLDL 173 (198)
T ss_pred HHhh
Confidence 6654
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.50 E-value=0.019 Score=53.54 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCCchHHHHH
Q 013323 127 SDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRADDTATK 204 (445)
Q Consensus 127 ~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~a~~ 204 (445)
.+.....+++.... ...| +.+|...|+.--|..-+..|..+|.+..+.+..+ ++.++++++..+|...+ +.|-+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~---~~Afr 422 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDK---ETAFR 422 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCCh---hHHHH
Confidence 45666677776654 2333 4578899999999999999999999999988777 89999999999997643 88999
Q ss_pred HHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013323 205 IIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLK 284 (445)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 284 (445)
+|+.=-+.- ..+..--...+.-+...++-..+..+|+...
T Consensus 423 IFeLGLkkf----------------------------------------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 423 IFELGLKKF----------------------------------------GDSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHhc----------------------------------------CCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 998733321 2233344567788888999999999999999
Q ss_pred hCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 285 KDRKSPDV--YIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 285 ~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
..++.||. ..|..+|.--..-|++..+.++-+++...
T Consensus 463 ~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 463 TSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88777764 58999999999999999999888777654
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.49 E-value=0.088 Score=53.75 Aligned_cols=218 Identities=12% Similarity=0.133 Sum_probs=130.3
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcCCChhHHHH------------------HH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSL-IVGTMKGSRLQDTFF------------------FR 99 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~------------------~~ 99 (445)
.+...|-.|+..+...+++++|.++.+.-.+. .|+...+-.+ -..+.+.++.+.+-. +.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 45778899999999999999999999866553 3554432211 113444444433333 33
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC
Q 013323 100 DQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179 (445)
Q Consensus 100 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (445)
+.|...+ -+...+-.+..+|-+.|+.+++..+|++..+.. +-|+...|-+-..|... ++++|.+++.+....-+
T Consensus 107 ~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i-- 180 (906)
T PRK14720 107 DKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI-- 180 (906)
T ss_pred HHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--
Confidence 3333321 233456667777778888888888888888876 34677888888888888 88888888888776522
Q ss_pred CHHHHHHHHH---HHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCc
Q 013323 180 DKFCYAGLIT---AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256 (445)
Q Consensus 180 ~~~~~~~li~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 256 (445)
+..-|+.+.. -++.....+.+...++.+.+..+.+. ..-
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~--------------------------------------~~~ 222 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF--------------------------------------TRL 222 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc--------------------------------------chh
Confidence 2222333332 22222222223334444444332111 223
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 303 (445)
..++-.+-..|-..++++++..+++.+.+.. +-|.....-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 3456666667777777888888888777642 125555566666555
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.49 E-value=0.0046 Score=48.21 Aligned_cols=107 Identities=8% Similarity=-0.006 Sum_probs=87.1
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+......+...+...|++++|.+.|+.....+ +.+...|..+-..+.+.|++++|...++...+.+ +.+..++..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556677788889999999999999998754 3466778888888999999999999999988765 456778888888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~ 150 (445)
.+...|++++|...|+...+. .|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 999999999999999998875 35554443
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.04 Score=46.83 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.+..|.-+|++|-++ ..|+..+.+-...++...|++++|..++++...+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355555555555432 3455555555555555555555555555555554
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.0065 Score=51.33 Aligned_cols=156 Identities=12% Similarity=0.033 Sum_probs=110.5
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 124 (445)
..+-..+...|+-+....+....... ..-|....+.......+.|++..|...+.+..... ++|..+||.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55556677777777777666554322 22355556668888888888888888888887654 47788888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHH
Q 013323 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATK 204 (445)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~ 204 (445)
|+.+.|..-|.+..+.-. -+...+|.+...+.-.|+.+.|..++......+-. |..+-..+.-.....|+. +.|+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~--~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF--REAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh--HHHHh
Confidence 888888888887776421 24556777777788888888888888888776532 566666666667777765 55655
Q ss_pred HH
Q 013323 205 II 206 (445)
Q Consensus 205 ~~ 206 (445)
+.
T Consensus 224 i~ 225 (257)
T COG5010 224 IA 225 (257)
T ss_pred hc
Confidence 54
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.038 Score=46.82 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=42.6
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhh
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 164 (445)
.+...|+-+....+........ .-|....+.......+.|++..|+..|++..... ++|..+|+.+--+|.+.|+.++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhH
Confidence 3444444444444444332211 1233444445555555555555555555554322 3455555555555555555555
Q ss_pred HHHHHHHHHH
Q 013323 165 VYAIVRDMTA 174 (445)
Q Consensus 165 a~~~~~~m~~ 174 (445)
|..-|.+..+
T Consensus 153 Ar~ay~qAl~ 162 (257)
T COG5010 153 ARRAYRQALE 162 (257)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.088 Score=53.12 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCcccccccccc
Q 013323 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225 (445)
Q Consensus 146 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 225 (445)
+..|+.+..+-.+.|.+.+|.+-|-+ . -|+..|..+++...+.|.. +...+.+....+...
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik---a---dDps~y~eVi~~a~~~~~~--edLv~yL~MaRkk~~----------- 1164 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK---A---DDPSNYLEVIDVASRTGKY--EDLVKYLLMARKKVR----------- 1164 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh---c---CCcHHHHHHHHHHHhcCcH--HHHHHHHHHHHHhhc-----------
Confidence 34566666666666666665544321 1 2556666777777666654 555555544443311
Q ss_pred chhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013323 226 ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS 305 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 305 (445)
.| .+=+.+|-+|++.+++.+.+++. .-||..-...+-+-|...
T Consensus 1165 ----------------------------E~--~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1165 ----------------------------EP--YIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred ----------------------------Cc--cchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhh
Confidence 22 22345677777777766665544 235555555555666666
Q ss_pred CChhhHHHHHH
Q 013323 306 GDIDNGHKVFE 316 (445)
Q Consensus 306 g~~~~a~~~~~ 316 (445)
|.++.|.-+|.
T Consensus 1208 ~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1208 KMYEAAKLLYS 1218 (1666)
T ss_pred hhhHHHHHHHH
Confidence 66666665554
No 131
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0065 Score=54.01 Aligned_cols=142 Identities=9% Similarity=0.012 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
.+|-.++...-+.+..+.|..+|.+.++.+ +..+.....++|.-+ -.++.+.|.++|+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468889999999999999999999998653 233444444444333 356777799999998875 45678889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPN---GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
+.+.++.+.|..+|++.... +.++ ...|...+.-=.+.|+++.+..+.+.+.+. .|+......++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 99999999999999999875 3222 258999999999999999999999988875 34433333343
No 132
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0075 Score=53.63 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCcccccccccc
Q 013323 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225 (445)
Q Consensus 147 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 225 (445)
.+|..+|+..-|.+..+.|..+|.+..+.+ +..++....+.+..++.. +.+.|.+||+...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~---d~~~A~~Ife~glk~f------------ 66 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK---DPKRARKIFERGLKKF------------ 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS----HHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHC------------
Confidence 468888888888888889999998887653 456667777777666543 3366888988866542
Q ss_pred chhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 013323 226 ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV---YIVMQNIRCY 302 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~ 302 (445)
+.+...|..-+.-+.+.|+.+.|..+|+..... +.++. ..|...+.-=
T Consensus 67 ----------------------------~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 67 ----------------------------PSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp ----------------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHH
T ss_pred ----------------------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHH
Confidence 556677888888888899999999999988765 33322 4888888888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 303 LHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
.+.|+++.+.++..++.+. .|+......+++
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 8999999999998888774 344445555554
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.11 Score=52.53 Aligned_cols=232 Identities=12% Similarity=0.085 Sum_probs=142.2
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
..+..+-+.||.. -++.++|.+.-++. -....|..+-.+-.+.|.+.+|.+-|=.. -|+..|-.+
T Consensus 1075 ~~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eV 1139 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEV 1139 (1666)
T ss_pred cccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHH
Confidence 3455555555543 46677777776654 23467888888888888888876655322 467778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
++...+.|.+++-.+++....+..-+|... +.+|-+|++.+++.+..+... -|+......+=+-|...+..
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhh
Confidence 888888888888888887666665555544 568888888888766554432 36766666676767666655
Q ss_pred chHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHH
Q 013323 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 277 (445)
+.|+-++..+.....+.... -.+.....+-...++ ..+..||.-+-.+|...+.+..|.
T Consensus 1211 --~aAkl~y~~vSN~a~La~TL---------------V~LgeyQ~AVD~aRK----Ans~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1211 --EAAKLLYSNVSNFAKLASTL---------------VYLGEYQGAVDAARK----ANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred --HHHHHHHHHhhhHHHHHHHH---------------HHHHHHHHHHHHhhh----ccchhHHHHHHHHHhchhhhhHHH
Confidence 66776666554322111000 000000000001111 345567777777777766655543
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 013323 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319 (445)
Q Consensus 278 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (445)
|-...+.....-..-||.-|-..|-+++-..+++.-.
T Consensus 1270 -----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1270 -----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred -----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 2222334455566778888888888888887776543
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.28 E-value=0.019 Score=53.09 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccch
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (445)
.-..++..+...++++.|.++|+++.+.. |+... .+...+...++. .+|.++.....+..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~--~LA~v~l~~~~E--~~AI~ll~~aL~~~-------------- 230 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVAV--LLARVYLLMNEE--VEAIRLLNEALKEN-------------- 230 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHHH--HHHHHHHhcCcH--HHHHHHHHHHHHhC--------------
Confidence 34556666777888999999999998874 55433 355555444332 34444443322211
Q ss_pred hhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 013323 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY-IVMQNIRCYLHSG 306 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g 306 (445)
+.+..........|.+.++.+.|..+.++..+ ..|+.. +|..|..+|...|
T Consensus 231 --------------------------p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 231 --------------------------PQDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred --------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcC
Confidence 44555666666778899999999999999876 567555 9999999999999
Q ss_pred ChhhHHHHHHHHHh
Q 013323 307 DIDNGHKVFEDYIC 320 (445)
Q Consensus 307 ~~~~a~~~~~~m~~ 320 (445)
+++.|+..++.+.-
T Consensus 283 d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 283 DFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHhcCcC
Confidence 99999999987763
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.27 E-value=0.09 Score=53.69 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-----CCCHHHHHH
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK-----FPPAELYAT 332 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~ 332 (445)
..+-.+..+|-+.|+.+++..+++++.+.. +-|....|.+-..|+.. ++++|.+++......-+ ..=...|..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSK 194 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 345567777777888888888888777654 33667777777777777 88888777776654411 111112222
Q ss_pred HHHhHhhcCChhhHHHHHHHHHHHHhC-CCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 013323 333 LVEGAMFGYTPKGMQLAQDTLVNMNSR-NIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411 (445)
Q Consensus 333 li~~~~~~~~~~g~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 411 (445)
++. +.....+.-..+.+.+... |..--..++-.+-.-|. ...+|+++..+|+...+..-. |.....-++..
T Consensus 195 ~~~-----~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~--~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~ 266 (906)
T PRK14720 195 LVH-----YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK--ALEDWDEVIYILKKILEHDNK-NNKAREELIRF 266 (906)
T ss_pred HHh-----cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHH
Confidence 222 1111113333333333332 22222233333334443 778888888888888865432 44445556665
Q ss_pred hh
Q 013323 412 LK 413 (445)
Q Consensus 412 ~~ 413 (445)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 54
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.19 E-value=0.0071 Score=43.12 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=34.1
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHH
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~ 167 (445)
..|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|++++|..
T Consensus 12 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 12 KLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444443322 1122333444444444444444444444443322 1122344444444444444444444
Q ss_pred HHHHH
Q 013323 168 IVRDM 172 (445)
Q Consensus 168 ~~~~m 172 (445)
.+...
T Consensus 90 ~~~~~ 94 (100)
T cd00189 90 AYEKA 94 (100)
T ss_pred HHHHH
Confidence 44443
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.019 Score=43.37 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=37.2
Q ss_pred HhcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHHHcCC
Q 013323 86 TMKGSRLQDTFFFRDQMKANGF--LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE--VKPNGQTYVCLLNACAAAGQ 161 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~y~~li~~~~~~g~ 161 (445)
+.+.|++++|.+.|+.+.+..- ......+..+..++.+.|+++.|...|+...... ......++..+..++.+.|+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 3344444444444444443210 0012233334444444555555555555444321 00112334444444444555
Q ss_pred hhhHHHHHHHHHHc
Q 013323 162 LDPVYAIVRDMTAA 175 (445)
Q Consensus 162 ~~~a~~~~~~m~~~ 175 (445)
.++|...++++.+.
T Consensus 92 ~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 92 KEKAKATLQQVIKR 105 (119)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555544443
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.15 E-value=0.023 Score=42.90 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCCCHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKANG--FLPDVAVYN 115 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~ 115 (445)
.++-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+..++.+.|+++.|.+.|+.+.... -.....++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 355677788889999999999999998753 33 3456667888999999999999999988753 112256677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKYE 141 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~g 141 (445)
.+..++.+.|+.++|...+++..+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 88888999999999999999998864
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.15 E-value=0.024 Score=54.90 Aligned_cols=154 Identities=11% Similarity=0.088 Sum_probs=74.7
Q ss_pred hhhHHhhccccccccccc--eeecchHHHHHHhcCCCCChhhH------HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC
Q 013323 4 LQSIYRHHKSVGGALGRR--FFVTSAGAEEYARRNYANNASEY------NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT 75 (445)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 75 (445)
|..++.-+..++...|.+ .|+.-.....|..+.|+.-..+| ...|..|-...+|++++.+-+- .|. |-
T Consensus 512 lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~---~~~-p~ 587 (1636)
T KOG3616|consen 512 LHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEA---KGH-PA 587 (1636)
T ss_pred HHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHh---cCC-hH
Confidence 455555565555555443 34454455566666664333222 2345566666666666665442 222 22
Q ss_pred HH-HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 76 RD-LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 76 ~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
.. .-.+.+.++...|+-+.|-++ ..+ +-.+ -+.|..|.+.|.+.+|.+....=.. +..|......+..
T Consensus 588 ~eklk~sy~q~l~dt~qd~ka~el----k~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ 656 (1636)
T KOG3616|consen 588 LEKLKRSYLQALMDTGQDEKAAEL----KES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAA 656 (1636)
T ss_pred HHHHHHHHHHHHHhcCchhhhhhh----ccc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHH
Confidence 22 223445555556655554332 211 1111 2356777777777766654421111 2234444555555
Q ss_pred HHHHcCChhhHHHHHHHH
Q 013323 155 ACAAAGQLDPVYAIVRDM 172 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m 172 (445)
++.+..-+++|-.+|+++
T Consensus 657 alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 657 ALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred HHHhhHHHHhhhhHHHHh
Confidence 555444444444444444
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.12 E-value=0.0094 Score=42.46 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 122 (445)
+|..+...+...|++++|...++...+.. +.+...+..+...+...++++.|.+.++...+.. +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987753 2234667777888888999999999999988765 244568888899999
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 013323 123 KCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~ 140 (445)
..|++++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887653
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.12 E-value=0.025 Score=44.79 Aligned_cols=129 Identities=21% Similarity=0.194 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 334 (445)
...|..++..+. .++...+...++.+....-.- .....-.+-..+...|++++|...|+...... |+.......-
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~ 88 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 346888888875 788899999899888753111 12233334577888999999999999999876 3332221111
Q ss_pred HhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHH
Q 013323 335 EGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392 (445)
Q Consensus 335 ~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~ 392 (445)
-.+...+...|. ++|+..++......+ .+. ...+.+-.+.+.|++++|...|++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~--~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAF--KAL--AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcch--HHH--HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111124566777 999999876433322 222 233344445699999999999875
No 142
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.09 E-value=0.012 Score=44.89 Aligned_cols=82 Identities=10% Similarity=0.140 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHH---------------HhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc-
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEM---------------KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA- 175 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m---------------~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~- 175 (445)
.++.++|-++++.|+++....+++.. ....+.|+..+..+++.+|+.+|++..|+++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34444555555555555544444332 22346788888889999998889999999988888764
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 013323 176 GAGLDKFCYAGLITAHTN 193 (445)
Q Consensus 176 g~~p~~~~~~~li~~~~~ 193 (445)
+++.+..+|..|++-...
T Consensus 83 ~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 677778888888875543
No 143
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.08 E-value=0.094 Score=48.61 Aligned_cols=120 Identities=11% Similarity=0.006 Sum_probs=73.3
Q ss_pred HHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHH
Q 013323 51 LTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD-VAVYNYLISVCGKCKNSDQ 129 (445)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 129 (445)
+...|..++|+..++.+... .+-|..-+......+.+.++.++|.+.++.+.... |+ ...+-.+-.++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 34556666777777666554 22234444455566667777777777777776643 44 4455556666777777777
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 130 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
|..+++...... +-|+..|..+-.+|...|+..++.....+...
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 777776666543 33566677777777777666666665555433
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.04 E-value=0.0012 Score=46.71 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHH
Q 013323 89 GSRLQDTFFFRDQMKANGF-LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~ 167 (445)
.|+++.|..+++.+.+..- .|+...+-.+-.+|.+.|++++|..+++. .+.+. .+....-.+-.++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776532 12344444567777777777777777776 22111 122333345677777777777777
Q ss_pred HHHH
Q 013323 168 IVRD 171 (445)
Q Consensus 168 ~~~~ 171 (445)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 145
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.83 E-value=0.024 Score=48.53 Aligned_cols=102 Identities=23% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------------HHHHH
Q 013323 73 QPTRDLFHSLIVGTM-----KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN----------------SDQAI 131 (445)
Q Consensus 73 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------------~~~a~ 131 (445)
+-|..+|-..+..+. +.++++-....+..|.+.|+..|..+|+.||+.+-+..- -+=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 345666666665553 346777777888888888988899999988888765432 13467
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHcCCh-hhHHHHHHHHHH
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQL-DPVYAIVRDMTA 174 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~-~~a~~~~~~m~~ 174 (445)
+++++|...|+.||-.+-.++++++.+.+-. .+...+.-.|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 7888888888888888888888888877654 344555555544
No 146
>PLN02789 farnesyltranstransferase
Probab=96.80 E-value=0.38 Score=43.58 Aligned_cols=208 Identities=6% Similarity=-0.017 Sum_probs=128.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD-VAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
+..+-..+...+..++|+.+++++.+.. |+ ..+|+.--.++...| ++++++.+++++.+... .+..+|+.--..+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 3344444556788999999999999854 54 446776666666667 67999999999987643 3556677665555
Q ss_pred HHcCCh--hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccch
Q 013323 157 AAAGQL--DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234 (445)
Q Consensus 157 ~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (445)
.+.|+. ++++.+++.+.+..- -+..+|+.--..+...|.. +.+...++.+.+..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~--~eeL~~~~~~I~~d--------------------- 172 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGW--EDELEYCHQLLEED--------------------- 172 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHC---------------------
Confidence 566653 677888888887542 3567777766666666654 77777777766543
Q ss_pred hhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhc---ccH----HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc-
Q 013323 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL---KDV----QAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHS- 305 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~- 305 (445)
+.|...|+.....+.+. |+. +........... ..| |...|+-+-..+...
T Consensus 173 -------------------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 173 -------------------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDK 231 (320)
T ss_pred -------------------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCC
Confidence 34455566554444443 222 344445444443 234 566777777777663
Q ss_pred ---CChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 306 ---GDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 306 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
++..+|...+.+....++ .+......|++
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d 263 (320)
T PLN02789 232 EALVSDPEVSSVCLEVLSKDS-NHVFALSDLLD 263 (320)
T ss_pred cccccchhHHHHHHHhhcccC-CcHHHHHHHHH
Confidence 334557777766555322 23444444544
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.78 E-value=0.043 Score=53.22 Aligned_cols=108 Identities=8% Similarity=0.111 Sum_probs=54.3
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 129 (445)
+......|.+|+.+++.++.... -..-|..+-.-|+..|+++.|.++|-+. ..++..|.+|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33444555555555555544321 1223445555566666666666665432 123455666666666666
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHH
Q 013323 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170 (445)
Q Consensus 130 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 170 (445)
|.++-.+.. |.......|-+-..-.-..|++.+|.++|-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 666554433 222334444444444555555555555543
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.78 E-value=0.049 Score=44.32 Aligned_cols=61 Identities=3% Similarity=-0.053 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLP--DVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
|..+...+...|++++|...|+........| ...+|..+-..+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444445555555555555554432111 123455555555555555555555555543
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.78 E-value=0.081 Score=43.22 Aligned_cols=114 Identities=5% Similarity=-0.002 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD--VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
.|..+-..+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..... +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344555556666777777777776665432221 3466666677777777777777777666532 1134445555555
Q ss_pred HHHcCC--------------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 156 CAAAGQ--------------LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 156 ~~~~g~--------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
+...|+ +++|.+++++.... .|+ .|..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 555554 34445555444442 233 25555555554443
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.77 E-value=0.0028 Score=44.72 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=59.5
Q ss_pred cCcHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 013323 54 QRRFFLLRDVYDDMMLDGV-QPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 132 (445)
.|+++.|+.+++.+.+... .|+...+-.+-.++.+.|++++|..+++. .+.+. .+....-.+-.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5889999999999988643 12444555578899999999999999988 32221 223444456788999999999999
Q ss_pred HHHH
Q 013323 133 IFEE 136 (445)
Q Consensus 133 ~~~~ 136 (445)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 151
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.32 Score=48.28 Aligned_cols=247 Identities=13% Similarity=0.117 Sum_probs=150.0
Q ss_pred ChhhHHHHH--HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC-CC--------C
Q 013323 40 NASEYNTVV--TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-GF--------L 108 (445)
Q Consensus 40 ~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~--------~ 108 (445)
|..+--+++ +.|..-|+.+.|..-.+.++ +...|..+-+.|.+..+++-|.-.+..|... |. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 555555555 35667789998887777664 4578999999999999999998888777542 11 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 109 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
|+ .+=.-+--.....|-+++|+.+|++-+. |..|=..|-..|.|++|+++-+.=-+-.++.+-+-|..-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 22 2222222334567889999999999886 5555566777899999998865433322332333333333
Q ss_pred HHHHccCCCchHHHHHHHH-----------HHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCch
Q 013323 189 TAHTNKIPRADDTATKIIE-----------LVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL 257 (445)
Q Consensus 189 ~~~~~~~~~~~~~a~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 257 (445)
.+- ++ .+.|.+.|+ .+..... . ...-.++ ..|.
T Consensus 869 ear---~D--i~~AleyyEK~~~hafev~rmL~e~p~------------------------~---~e~Yv~~----~~d~ 912 (1416)
T KOG3617|consen 869 EAR---RD--IEAALEYYEKAGVHAFEVFRMLKEYPK------------------------Q---IEQYVRR----KRDE 912 (1416)
T ss_pred Hhh---cc--HHHHHHHHHhcCChHHHHHHHHHhChH------------------------H---HHHHHHh----ccch
Confidence 221 11 133433333 2222100 0 0000011 3344
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 337 (445)
..|.-.-..+-..|+.+.|..++...++ |-++++..|-.|++++|-++-++- | |....-.|-+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR-- 975 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLAR-- 975 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHH--
Confidence 4555555555667888888888877554 456778888899999998887643 2 3333333444
Q ss_pred hhcCChhhH-HHHHHHHHHHH
Q 013323 338 MFGYTPKGM-QLAQDTLVNMN 357 (445)
Q Consensus 338 ~~~~~~~g~-~~a~~~~~~m~ 357 (445)
-|-..|. .+|..+|.+.+
T Consensus 976 --~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 976 --MYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --HhhhhHHHHHHHHHHHHHH
Confidence 4777787 88888877654
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.77 E-value=0.083 Score=43.17 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT--RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
....|..+-..+...|++++|...|++..+....|+ ...+..+-..+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344567777888889999999999999887543332 3567888888999999999999999998854 2246667777
Q ss_pred HHHHHccCC--------------HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC
Q 013323 118 ISVCGKCKN--------------SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160 (445)
Q Consensus 118 l~~~~~~g~--------------~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 160 (445)
..++...|+ +++|.+++++... .+...|..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcC
Confidence 777877776 3445555555443 22233555555554444
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.75 E-value=0.73 Score=46.22 Aligned_cols=230 Identities=10% Similarity=0.089 Sum_probs=154.7
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT--MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 126 (445)
-.....+++..|+.....+.+.- ||. .|..+++++ .+.|..++|..+++.....+.. |..|...+-.+|-+.++
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 34457789999999888877652 663 455556654 5889999999999988877654 89999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCc--------
Q 013323 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA-------- 198 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~-------- 198 (445)
.++|..+|++.... -|+..-...+..+|+|.+.+.+-.++=-+|-+ .++-..+.+-++++-....-...
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999999864 57888888889999998887664444333333 23345666777776654332110
Q ss_pred hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHH
Q 013323 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278 (445)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~ 278 (445)
...|.+.++.+.+.+ |. ..+..-.-.-...+-..|+.++|..
T Consensus 170 l~LA~~m~~~~l~~~-------------------------------------gk-~~s~aE~~Lyl~iL~~~~k~~eal~ 211 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKK-------------------------------------GK-IESEAEIILYLLILELQGKYQEALE 211 (932)
T ss_pred HHHHHHHHHHHhccC-------------------------------------Cc-cchHHHHHHHHHHHHhcccHHHHHH
Confidence 112233333322221 11 1111122223344556778999999
Q ss_pred HHH-HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 013323 279 LLE-MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323 (445)
Q Consensus 279 ~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 323 (445)
++. ..-+.-..-+...-+--+..+...+++.+..++-.++...|-
T Consensus 212 ~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 212 FLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 884 433333334666666778888899999999998888888753
No 154
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.75 E-value=0.031 Score=47.88 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=81.1
Q ss_pred CCChhhHHHHHHHHHhc-----CcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----------------ChhHHH
Q 013323 38 ANNASEYNTVVTSLTSQ-----RRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS----------------RLQDTF 96 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 96 (445)
+.|..+|-..+..+... +.++=..-.++.|++.|+.-|..+|+.||..+-+.. .-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 67888888888777654 556666777899999999999999999999876532 445678
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHH
Q 013323 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMK 138 (445)
Q Consensus 97 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~ 138 (445)
+++++|..+|+.||..+-..|++++++.+.. .+..++.--|.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999999998875 44445444444
No 155
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.15 Score=48.25 Aligned_cols=219 Identities=8% Similarity=-0.015 Sum_probs=131.3
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhH
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a 165 (445)
+.+.|++.+|.-.|+...+.+ +-+...|--|-......++-..|+.-+++..+.. +-|....-.|--.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 346777888888888777664 2356678777777777777777777777777643 12456666677777777777777
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhh
Q 013323 166 YAIVRDMTAAGAG--------LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237 (445)
Q Consensus 166 ~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (445)
+..++.-.....+ ++...-.. ..+.... ......++|-.+......
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~--~l~~i~~~fLeaa~~~~~---------------------- 426 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSS--HLAHIQELFLEAARQLPT---------------------- 426 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHH--HHHHHHHHHHHHHHhCCC----------------------
Confidence 7777665432210 00000000 0000000 002222223222222110
Q ss_pred cchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHH
Q 013323 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFE 316 (445)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (445)
.+|..++..|--.|--.|.+++|...|+.... ++| |..+||-|=..++...+.++|...|+
T Consensus 427 ----------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 427 ----------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred ----------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 24555566666666777888888888887766 456 55678888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHH
Q 013323 317 DYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVN 355 (445)
Q Consensus 317 ~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~ 355 (445)
+..+..-.--..-||.-|. |...|. ++|.+.|-.
T Consensus 489 rALqLqP~yVR~RyNlgIS-----~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGIS-----CMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHhcCCCeeeeehhhhhh-----hhhhhhHHHHHHHHHH
Confidence 8776521112345666664 667776 666666544
No 156
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.66 E-value=0.19 Score=44.80 Aligned_cols=131 Identities=8% Similarity=0.129 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhhHHHHHHHHHhCCC---CCCHHHHHHHHHhHhhcCCh
Q 013323 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH--SG----DIDNGHKVFEDYICSEK---FPPAELYATLVEGAMFGYTP 343 (445)
Q Consensus 273 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~ 343 (445)
+++...+++.|++.|++-+.++|-+....... .. .+.+|..+|+.|++... .++-..+.+|+. -..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA-----~~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA-----MTS 152 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh-----ccc
Confidence 55666777777777777776665542222222 22 24567777777777621 355666666664 122
Q ss_pred hh---H-HHHHHHHHHHHhCCCCCCcc-hhhHHHHHhh-cccCCChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 344 KG---M-QLAQDTLVNMNSRNIFLSPR-MGSDLLLVAA-GEKSGGYTTANYIWDLMQARKITPSLPAVEAY 408 (445)
Q Consensus 344 ~g---~-~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 408 (445)
.. . +.+...++.+.+.|+..+-. -+.+-+.+.. -.......++..+++.+.+.|+++....|..+
T Consensus 153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 22 2 56667777777777654433 2222222222 01111134566777777777777665555533
No 157
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.61 E-value=0.69 Score=44.01 Aligned_cols=250 Identities=12% Similarity=-0.010 Sum_probs=160.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCch
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRAD 199 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~ 199 (445)
+.+.|++.+|.-.|+.-...+ +-+...|--|-..-..+++-..|+..+++..+. .|+ ....-.|--.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q-- 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ-- 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH--
Confidence 567899999999999887764 236789999999999999999999999988874 455 44444555566666643
Q ss_pred HHHHHHHHHHHHhc-CCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHH
Q 013323 200 DTATKIIELVEQSK-GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278 (445)
Q Consensus 200 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~ 278 (445)
..|.+.++...... ........ ... +...+. ..+.....+....+
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a----------~~~----------------~~~~~~--------~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSA----------GEN----------------EDFENT--------KSFLDSSHLAHIQE 415 (579)
T ss_pred HHHHHHHHHHHHhCccchhcccc----------Ccc----------------ccccCC--------cCCCCHHHHHHHHH
Confidence 55666666554332 22111100 000 000000 11222233445555
Q ss_pred HHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 279 LLEMLK-KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 279 ~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
+|-++. +.+..+|..++..|=-.|--.|++++|.+.|+...... +-|..+||.|=. .++...+ .+|...|.+.
T Consensus 416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGA----tLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGA----TLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhH----HhcCCcccHHHHHHHHHH
Confidence 555544 45655677777777777888999999999999987752 237778998876 3455556 8999999999
Q ss_pred HhCCCCCCc--chhhHHHHHhhcccCCChhhHHHHHHHHH---HCC------CCCCHHHHHHHHhhhhccCCCC
Q 013323 357 NSRNIFLSP--RMGSDLLLVAAGEKSGGYTTANYIWDLMQ---ARK------ITPSLPAVEAYYNGLKDREVPA 419 (445)
Q Consensus 357 ~~~~~~p~~--~~~~~ll~~~~~~~~g~~~~A~~~~~~m~---~~~------~~p~~~~~~~l~~~~~~~~~~~ 419 (445)
++. +|+. +=||.-| .|+ ..|.+++|.+.|=... ..+ -.++...|..|=.++.-.++++
T Consensus 491 LqL--qP~yVR~RyNlgI-S~m--NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 491 LQL--QPGYVRVRYNLGI-SCM--NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred Hhc--CCCeeeeehhhhh-hhh--hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 885 4554 4566555 577 9999999998876544 221 1234456666655554444443
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.59 E-value=0.059 Score=49.83 Aligned_cols=85 Identities=11% Similarity=0.027 Sum_probs=38.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHH
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~ 167 (445)
..|+++.|...|++..+.. +-+...|..+-.+|.+.|++++|+..+++..... +.+...|..+-.+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444554444444432 1233344444444445555555555555444422 1133344444444455555555555
Q ss_pred HHHHHHH
Q 013323 168 IVRDMTA 174 (445)
Q Consensus 168 ~~~~m~~ 174 (445)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5544444
No 159
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.52 E-value=0.71 Score=43.08 Aligned_cols=136 Identities=11% Similarity=0.021 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCchHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDT 201 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~ 201 (445)
..|++++|+..++.+... .+-|...+......+.+.++.++|.+.++.+... .|+ ....-.+-.++.+.|+. .+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~--~e 392 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP--QE 392 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh--HH
Confidence 456666666666665543 1223444555556666666666666666666654 344 23333344555555554 45
Q ss_pred HHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHH
Q 013323 202 ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLE 281 (445)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 281 (445)
+.+++....... +.|...|..+-.+|...|+..++..-.
T Consensus 393 ai~~L~~~~~~~----------------------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~- 431 (484)
T COG4783 393 AIRILNRYLFND----------------------------------------PEDPNGWDLLAQAYAELGNRAEALLAR- 431 (484)
T ss_pred HHHHHHHHhhcC----------------------------------------CCCchHHHHHHHHHHHhCchHHHHHHH-
Confidence 555554444321 445556666666666666665554332
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 282 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
-..|...|+++.|...+....+.
T Consensus 432 -----------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 -----------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 22345566666666666655554
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.48 E-value=0.0094 Score=39.94 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 90 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
|++++|.++|+.+.+.. +-+...+-.+..+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444443322 1133333344444444444444444444443
No 161
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.69 Score=42.26 Aligned_cols=157 Identities=11% Similarity=-0.013 Sum_probs=95.2
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHh-cCChhhHHHHHHHHHhCCCCCCHHHHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN-IRCYLH-SGDIDNGHKVFEDYICSEKFPPAELYA 331 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~ 331 (445)
+-+..+|..++++|...|++.+|..+-+...+. +.-+..+.+.+ -..|.- ..--|+|..+++.-.. +.|+-.---
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 457788999999999999999888776654432 23345555533 122222 2223677777765444 334332222
Q ss_pred HHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHh
Q 013323 332 TLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYN 410 (445)
Q Consensus 332 ~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 410 (445)
.++.- -+...|. ..+..++++.... .||....+.+-.... ....+++|+..|..-.. +.|...---.=++
T Consensus 442 ~~~AE---L~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~--A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 442 NLIAE---LCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR--AQNEPQKAMEYYYKALR--QDPKSKRTLRGLR 512 (564)
T ss_pred HHHHH---HHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH--HhhhHHHHHHHHHHHHh--cCccchHHHHHHH
Confidence 22221 2466777 8888998887753 477777777777666 77888888888876653 4455443222344
Q ss_pred hhhccCCCCCCC
Q 013323 411 GLKDREVPADDP 422 (445)
Q Consensus 411 ~~~~~~~~~~a~ 422 (445)
-+.+...++||.
T Consensus 513 ~lEK~~~~~DAT 524 (564)
T KOG1174|consen 513 LLEKSDDESDAT 524 (564)
T ss_pred HHHhccCCCCcc
Confidence 455555565555
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.45 E-value=0.084 Score=48.81 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=81.2
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 128 (445)
..+...|+++.|++.|++..+..- -+...|..+-.++.+.|++++|...++...+.. +.+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 455678999999999999988642 356677788888999999999999999999865 235778888999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHH
Q 013323 129 QAIRIFEEMKKYEVKPNGQTYVCLL 153 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~y~~li 153 (445)
+|...|++..+. .|+.......+
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999999875 45544444443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.42 E-value=0.1 Score=42.44 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP--TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
....|..+...+...|++++|...|+........| ...+|..+-..+...|+.++|...++...... +....+++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 35667777778888899999999999887653222 23467777788889999999999999888753 2334566666
Q ss_pred HHHHH-------ccCCHHHHHHHHHHH
Q 013323 118 ISVCG-------KCKNSDQAIRIFEEM 137 (445)
Q Consensus 118 l~~~~-------~~g~~~~a~~~~~~m 137 (445)
...+. +.|+++.|+..+++-
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 555566655555543
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.025 Score=44.84 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH-----cCCCCCHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA-----AGAGLDKFCYA 185 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 185 (445)
.+...++..+...|++++|..+.+...... +.|...|..+|.++...|+..+|.++|+.+.. -|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345567777888999999999999888754 34677899999999999999999999988753 48888876643
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.37 E-value=1.3 Score=44.54 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=58.8
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhH
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC--GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a 165 (445)
..+++..|.+-.+.+.+.- |+.. |..++.++ .|.|+.++|..+++.....+.. |..|..++-.+|.+.++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4566666666666665432 3332 23333333 4566777777666666554433 666777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 013323 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 166 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 194 (445)
..+|+..... -|+..-...++.+|.+.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~ 123 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVRE 123 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHH
Confidence 7777766654 35555555555555544
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.57 Score=39.86 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=45.3
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc---CChhhHHHHHHHHHhCCCCCCHHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHS---GDIDNGHKVFEDYICSEKFPPAEL 329 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~ 329 (445)
..|...|.-+-..|...|++++|--.++++.- +.| +...+..+-..+-.. .+++.|..+|....+..-+-....
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 55666777777777777777777777777765 345 333333443333332 345667777776665532223333
Q ss_pred HHHHHH
Q 013323 330 YATLVE 335 (445)
Q Consensus 330 ~~~li~ 335 (445)
|.+.+.
T Consensus 229 ~GI~lc 234 (289)
T KOG3060|consen 229 FGIYLC 234 (289)
T ss_pred HHHHHH
Confidence 444433
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.30 E-value=0.017 Score=38.70 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=51.8
Q ss_pred HhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 52 TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
.+.|++++|.++|+...+..- -|...+..+..++.+.|++++|.++++.+.... |+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 568999999999999987642 277778889999999999999999999999864 7766665554
No 168
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.28 E-value=0.32 Score=43.44 Aligned_cols=158 Identities=10% Similarity=0.046 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCC--CchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhc
Q 013323 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN--KIP--RADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238 (445)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (445)
++...+++.|.+.|+.-+..+|-+....... ... .....+..+++.|++...+-+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4456677777777777776666654333322 111 113557778888887654432
Q ss_pred chhhhhHHhhhcCcccCchhHHHHHHHHHHhcc--cHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--hhhHH
Q 013323 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK--DVQAMETLLEMLKKDRKSPDV--YIVMQNIRCYLHSGD--IDNGH 312 (445)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~ 312 (445)
.++-..+.+++..-...- -.+.++.+++.+.+.|+..+- ...+.++..+-.... +.++.
T Consensus 138 ---------------s~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~ 202 (297)
T PF13170_consen 138 ---------------SPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVI 202 (297)
T ss_pred ---------------CccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHH
Confidence 334445665654411111 257788889998888877633 234444433322222 45788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhh---H-HHHHHHHHHHHhC
Q 013323 313 KVFEDYICSEKFPPAELYATLVEGAMFGYTPKG---M-QLAQDTLVNMNSR 359 (445)
Q Consensus 313 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g---~-~~a~~~~~~m~~~ 359 (445)
++++.+.+.|+++...+|..+=-. ++...+ . +...++.+.+.+.
T Consensus 203 ~l~~~l~~~~~kik~~~yp~lGlL---all~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 203 ELYNALKKNGVKIKYMHYPTLGLL---ALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHcCCccccccccHHHHH---HhcCCchHHHHHHHHHHHHHHhhC
Confidence 999999999999888887755321 222222 2 4555555555443
No 169
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=1.1 Score=42.42 Aligned_cols=360 Identities=11% Similarity=-0.006 Sum_probs=178.5
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD-VAVYNYLISVCGKCKNSD 128 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 128 (445)
+....|+++.|...|-+-.... ++|...|.--..++++.|++++|.+==.+-.+ +.|+ ..-|+-.-.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 4467899999999998876654 34777788888899999999988765444444 4577 457888888888889999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhH---HHHHHHHHHc---CCCCCHHHHHHHHHHHHccC-----CC
Q 013323 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV---YAIVRDMTAA---GAGLDKFCYAGLITAHTNKI-----PR 197 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a---~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~-----~~ 197 (445)
+|+.-|.+-.+.. +-|...++-+..++.-.....+. -.++..+... ........|..++..+-+.. ..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999998877653 23455666666666111000000 0011111110 00112233444444443221 00
Q ss_pred chHHHHHHHHHHHHhcCCccccccccccchhhcccch----hhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccH
Q 013323 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK----EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~ 273 (445)
......+....+...+ ........... .-....+ .............++ ...-..-+..+..+.-+..++
T Consensus 167 ~d~r~m~a~~~l~~~~-~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~d~~ee~~---~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVD-ELLFYASGIEI--LASMAEPCKQEHNGFPIIEDNTEERR---VKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred ccHHHHHHHHHHhcCc-ccccccccccc--CCCCCCcccccCCCCCccchhHHHHH---HHHhhhHHHHHHHHHHHhhhH
Confidence 0011111111111100 00000000000 0000000 000000000000000 000112233455555556667
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhh---cCChhhH-HHH
Q 013323 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMF---GYTPKGM-QLA 349 (445)
Q Consensus 274 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~g~-~~a 349 (445)
+.+.+-+....+.. -+..-++..-.+|...|.+..+...-+.-.+.|.. ...-|+.+-.++.. +|.+.+. +.+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 77777776655533 34444555556777777766665555554444322 12223323222222 5556666 666
Q ss_pred HHHHHHHHhCCCCCCcchhhH-----------------------HHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHH
Q 013323 350 QDTLVNMNSRNIFLSPRMGSD-----------------------LLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVE 406 (445)
Q Consensus 350 ~~~~~~m~~~~~~p~~~~~~~-----------------------ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 406 (445)
...|.+.......|+..+-.. --.+..+.+.|++..|.+.|.++.++. +-|...|.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 666666554433333311100 011222569999999999999999877 33455566
Q ss_pred HHHhhhhccCCCCCCCc
Q 013323 407 AYYNGLKDREVPADDPR 423 (445)
Q Consensus 407 ~l~~~~~~~~~~~~a~~ 423 (445)
----+|.+.|..+.|+.
T Consensus 397 NRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 55556666666655543
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.20 E-value=0.73 Score=39.98 Aligned_cols=53 Identities=21% Similarity=0.134 Sum_probs=36.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHH-H---HHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQ-T---YVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~---y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+.+.|++++|.+.|+.+...- |+.. . .-.+..++.+.+++++|...+++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455788888888888887642 3221 1 234556677788888888888888775
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.18 E-value=0.14 Score=40.40 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=69.0
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhh
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 164 (445)
.+...|++++|.++|+.+..... -+..-|-.|--++-..|++++|+..|......+. -|+..+-.+-.++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 35567889999999988887542 3455566677777778889999999988877653 467788888888888899999
Q ss_pred HHHHHHHHHHc
Q 013323 165 VYAIVRDMTAA 175 (445)
Q Consensus 165 a~~~~~~m~~~ 175 (445)
|.+.|+.....
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 99888887764
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.17 E-value=0.53 Score=45.77 Aligned_cols=138 Identities=10% Similarity=0.035 Sum_probs=96.6
Q ss_pred hcCCCCChhhHHHHHHHHHhcC-----cHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcC--------CChhHHHHHH
Q 013323 34 RRNYANNASEYNTVVTSLTSQR-----RFFLLRDVYDDMMLDGVQPTRD-LFHSLIVGTMKG--------SRLQDTFFFR 99 (445)
Q Consensus 34 ~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~ 99 (445)
.+....|..+|...+.+..... ....|.++|++..+. .|+-. .|..+..++... .++..+.+..
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4555788899999998865533 367899999998875 47643 344332222211 1223333334
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 100 DQMKAN-GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 100 ~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+..... ....+...|.++--.+...|++++|...+++..... |+...|..+-..+...|+.++|.+.+++....
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333332 133455777777666667899999999999999864 78899999999999999999999999998774
No 173
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.12 E-value=0.034 Score=44.05 Aligned_cols=109 Identities=13% Similarity=0.247 Sum_probs=70.3
Q ss_pred ChhhHHHHHH---HHHhcCcHhHHHHHHHHHHHC--C-CCCC----H--------------HHHHHHHHHHhcCCChhHH
Q 013323 40 NASEYNTVVT---SLTSQRRFFLLRDVYDDMMLD--G-VQPT----R--------------DLFHSLIVGTMKGSRLQDT 95 (445)
Q Consensus 40 ~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~--g-~~p~----~--------------~~~~~ll~~~~~~~~~~~a 95 (445)
|+..|..++. .....++.+.+.+.+.+.... | +-|+ . .....++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555543 234567777777777777652 2 1111 0 1234445556679999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----hCCCCccHHHH
Q 013323 96 FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK-----KYEVKPNGQTY 149 (445)
Q Consensus 96 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~y 149 (445)
..+.+.+.... +.|...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99999999865 3578899999999999999999999999875 34899987763
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.10 E-value=0.35 Score=38.17 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=59.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
-.-+...|++++|.++|+.....+. -+..-|-.+--++-..|++++|...|.....-.. -|...+-.+=.++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 3345567788888888877766432 2445556666666677788888888877776552 3556666666666667765
Q ss_pred chHHHHHHHHHHHHh
Q 013323 198 ADDTATKIIELVEQS 212 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~ 212 (445)
+.+++.|+.....
T Consensus 120 --~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 --CYAIKALKAVVRI 132 (157)
T ss_pred --HHHHHHHHHHHHH
Confidence 7777777765554
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.11 Score=44.14 Aligned_cols=147 Identities=12% Similarity=0.069 Sum_probs=105.0
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
-...-++++..+.-.+.+.-...++++.++..-+-+......|.+...+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34445677777777888888888888888876566777788888888899999999999998876543455555555443
Q ss_pred -----HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 120 -----VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 120 -----~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
.|.-+.++..|...|.+....+- .|+..-|.=.-+..-.|+..+|.+.++.|++. .|...+-++++-
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 45556788888888888877542 34555555555555568889999999999875 466666555443
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.04 E-value=1.1 Score=40.55 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=38.6
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFED 317 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 317 (445)
.|+...|...|.+++..+++++.+++-.. .- ++.-|..++.+|.+.|+..+|..+...
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 56666777777777777777777665432 11 225566677777777777777776665
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.85 E-value=0.059 Score=35.60 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
..+.+.|++++|.+.|++..+.. +-+...+..+-.++...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666666666665543 12455555555566666666666666665554
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.84 E-value=0.43 Score=36.04 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=23.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPD--VAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
..|+.++|..+|+.....|+..+ ...+-.+-+.+-..|++++|+.+|++...
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555443322 12233333444445555555555554443
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.6 Score=39.94 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMML 69 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 69 (445)
...|+.-+.++.+.+.++.|..=++.+.+
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~ 97 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGN 97 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhcc
Confidence 44566777788888888877655555443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.61 E-value=0.7 Score=34.94 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPT--RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD----VAVYNYLISVC 121 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~ 121 (445)
-.++-..|+.++|+.+|++-...|.... ...+..+-+.+...|+.++|..++++..... |+ ......+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 4566778999999999999999887655 2346667778889999999999999988753 43 22222233466
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
...|+.++|++.+-.... ++...|.--|..|..
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 778999999998876653 444567766666653
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.54 E-value=0.27 Score=43.90 Aligned_cols=165 Identities=12% Similarity=0.105 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHhcC-CChhHHHHHHHHHHH----CCCCCC--
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMML----DGVQPTRD--LFHSLIVGTMKG-SRLQDTFFFRDQMKA----NGFLPD-- 110 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~--~~~~ll~~~~~~-~~~~~a~~~~~~m~~----~g~~p~-- 110 (445)
|......|- ..++++|.+.+++... .| .|+.. .+..+-..|... |+++.|.+.|++..+ .| .+.
T Consensus 78 ~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a 154 (282)
T PF14938_consen 78 YEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSA 154 (282)
T ss_dssp HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhH
Confidence 333334433 3366666666665543 23 22222 355556667777 899999999888754 23 121
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CccHH-HHHHHHHHHHHcCChhhHHHHHHHHHHc--CCCCC--
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-----KPNGQ-TYVCLLNACAAAGQLDPVYAIVRDMTAA--GAGLD-- 180 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~-- 180 (445)
..++..+...+.+.|++++|.++|++....-+ +.+.. .|-..+-++...||...|...|++.... ++..+
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 35677788889999999999999999876432 22332 2334455777789999999999998764 34333
Q ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
......||.++-....-....+..-|+.+.+
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 4566778888866543333334444443333
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.50 E-value=0.074 Score=35.11 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=24.8
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
+.+.|++++|...|++..+.. +-+...+..+-.++.+.|++++|..+|++..
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555443 1134444445555555555555555555544
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.47 E-value=0.29 Score=42.95 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCccHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV----AVYNYLISVCGKCKNSDQAIRIFEEMKKY--EVKPNGQTYVC 151 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~y~~ 151 (445)
.|...+....+.|++++|...|+.+.+.- |+. ..+--+-..|...|++++|...|+.+... +-......+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 35555554455567777777777666542 322 34445556666677777777777766542 11112334444
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHc
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555566667777777777666654
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.46 E-value=0.094 Score=35.07 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHH
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG-QLDPVYAIVRDMTA 174 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~ 174 (445)
..+|..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|.+.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455666666666666666666666665542 124555666666666666 56666666665544
No 185
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=0.94 Score=35.41 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 122 (445)
.-..+|..+.+.+........++.+...+. .+...++.++..+++... +...+.++. . ++......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~----~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K----SNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c----cccCCHHHHHHHHH
Confidence 345678888888899999999999888763 677788899998886543 333333332 1 33444555888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHc-CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA-GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 193 (445)
+.+.++++.-++..+.. |...+..+... ++++.|.+.+.+ .-+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 88888888888887753 34444444444 778888877765 1256677777766653
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.40 E-value=1.1 Score=39.91 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHH
Q 013323 149 YVCLLNACAAAGQLDPVYAIVRDM 172 (445)
Q Consensus 149 y~~li~~~~~~g~~~~a~~~~~~m 172 (445)
|...-..|-..+++++|.+.|...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 333444455556666666555554
No 187
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.29 E-value=1.2 Score=35.73 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
.++++.+.+.++.|+...|..+|..+.+.|++. .+..+...++-+|.......+-.+....+.....+..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 456666677788888888888888888888744 4555666666667666665554444332211122222222222
Q ss_pred HhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC
Q 013323 211 QSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP 290 (445)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 290 (445)
. .+..+++.+...|++-+|.++.......
T Consensus 90 ~-----------------------------------------------~~~~iievLL~~g~vl~ALr~ar~~~~~---- 118 (167)
T PF07035_consen 90 T-----------------------------------------------AYEEIIEVLLSKGQVLEALRYARQYHKV---- 118 (167)
T ss_pred h-----------------------------------------------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----
Confidence 1 2555677777778887777777654221
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+......++.+-.+.++...=..+|+-....
T Consensus 119 ~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 119 DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122244556666666655555555544443
No 188
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.19 E-value=3.7 Score=40.78 Aligned_cols=72 Identities=8% Similarity=0.156 Sum_probs=51.3
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 013323 33 ARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105 (445)
Q Consensus 33 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (445)
....+.-|...|..+--++.+.|+++.+-+.|++....-+ -....|..+-..+...|.-..|..+++.-...
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 3444567888899999999999999999999988754322 34456666666666677777777777665543
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.07 E-value=3.7 Score=40.10 Aligned_cols=149 Identities=9% Similarity=0.048 Sum_probs=93.5
Q ss_pred CCCccHHHHHHHHHHHHHcCC-----hhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCc---hHHHHHHHHHHHH
Q 013323 141 EVKPNGQTYVCLLNACAAAGQ-----LDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRA---DDTATKIIELVEQ 211 (445)
Q Consensus 141 g~~p~~~~y~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~---~~~a~~~~~~~~~ 211 (445)
+...|...|...+++.....+ .+.|..+|++..+. .|+ ...|..+..++....... .+......+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345678899999998655332 56899999998885 465 344444333222111111 1112222222222
Q ss_pred hcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC
Q 013323 212 SKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD 291 (445)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 291 (445)
..... ..+.+...|.++--.....|++++|...+++..... |+
T Consensus 410 a~al~-----------------------------------~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps 452 (517)
T PRK10153 410 IVALP-----------------------------------ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MS 452 (517)
T ss_pred hhhcc-----------------------------------cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC
Confidence 10000 013344567766555666799999999999988754 78
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 013323 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330 (445)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 330 (445)
...|..+-..+...|+.++|.+.|++.... .|...||
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 889999999999999999999999987665 3444443
No 190
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.03 E-value=1.1 Score=33.96 Aligned_cols=68 Identities=10% Similarity=0.164 Sum_probs=49.2
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 324 (445)
+...+...+......|+-+...++...+.+. -.++....-.+-.+|.+.|+..++-+++.+.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445777888889999999999999988763 3577777778899999999999999999998888764
No 191
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.92 E-value=4.5 Score=40.26 Aligned_cols=217 Identities=11% Similarity=0.083 Sum_probs=131.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 99 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
+.++....+.-|...|..|.-+..++|+++.+-+.|++....- .-..+.|+.+-..+.-.|.-..|..+++.-....-.
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3344444566789999999999999999999999999876432 235678999999999999999999999877664433
Q ss_pred CCHHHHHHHHH-HHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCch
Q 013323 179 LDKFCYAGLIT-AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLL 257 (445)
Q Consensus 179 p~~~~~~~li~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 257 (445)
|+..+--.+.. -|.+.- ..++...++..+--+.- ....+.+.|
T Consensus 390 ps~~s~~Lmasklc~e~l----~~~eegldYA~kai~~~------------------------------~~~~~~l~~-- 433 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERL----KLVEEGLDYAQKAISLL------------------------------GGQRSHLKP-- 433 (799)
T ss_pred CCcchHHHHHHHHHHhch----hhhhhHHHHHHHHHHHh------------------------------hhhhhhhhh--
Confidence 54444333333 333221 23333333322211000 000011111
Q ss_pred hHHHHHHHHHHhc-----------ccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 013323 258 TVYHVAFHACAEL-----------KDVQAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325 (445)
Q Consensus 258 ~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 325 (445)
..|-.+--+|... ....++.+.+++..+. +-.|++..|-++- |+..++++.|.+...+..+-+-.-
T Consensus 434 ~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~ 511 (799)
T KOG4162|consen 434 RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGD 511 (799)
T ss_pred hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCc
Confidence 1222222222211 1245666667766554 4456555555544 677788999999999988885555
Q ss_pred CHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHh
Q 013323 326 PAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNS 358 (445)
Q Consensus 326 ~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~ 358 (445)
++..|.-|.-. +...++ ..|+.+.+...+
T Consensus 512 ~~~~whLLALv----lSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 512 SAKAWHLLALV----LSAQKRLKEALDVVDAALE 541 (799)
T ss_pred cHHHHHHHHHH----HhhhhhhHHHHHHHHHHHH
Confidence 77777766653 355555 888888876543
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.89 E-value=0.56 Score=41.13 Aligned_cols=103 Identities=10% Similarity=0.080 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCCCHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR----DLFHSLIVGTMKGSRLQDTFFFRDQMKANG--FLPDVAVY 114 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~ 114 (445)
...|+..+..+.+.|++++|...|+.+.+.- |+. ..+-.+-..+...|++++|...|+.+.+.- -+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4457777766677899999999999998753 443 456667778889999999999999998642 11123444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 147 (445)
-.+...+...|+.++|..+|+...+. .|+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 45566777899999999999999875 35543
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.80 E-value=0.16 Score=33.91 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 013323 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMK 138 (445)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~ 138 (445)
..+|..+-..+...|++++|...|++..+.. +-+...|..+-.+|.+.| ++++|++.|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555566666666666666665543 123455556666666666 4666666665544
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.78 E-value=0.25 Score=33.41 Aligned_cols=56 Identities=5% Similarity=0.121 Sum_probs=31.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
..|.+.+++++|.++++.+...+ +.+...|...-.++.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666665542 124445555556666666666666666666554
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.76 E-value=0.12 Score=35.59 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKY----E-VKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
.+|+.+-..|.+.|++++|+..|++..+. | -.|+ ..+++.+-..+...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666777777777777777665432 1 1122 4556666677777777777777766543
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.76 E-value=1.7 Score=40.27 Aligned_cols=145 Identities=11% Similarity=0.149 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY-NYLI 118 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll 118 (445)
...|...|.+..+..-++.|..+|-+.++.| +.+++..++++|.-++ .|+...|..+|+-=... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566777777777777777777777777777 5567777777777655 46666777777653332 1443333 4456
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPN--GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 191 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 191 (445)
..+.+.++-+.|..+|+.-.++ +..+ ...|..+|.--..-|++..|..+=+.|.+. .|...+.....+-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6667777777777777744332 1112 356777777777777777777666666553 34444444444444
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=1.3 Score=38.87 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCccHHHHH
Q 013323 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK---NSDQAIRIFEEMKKYEVKPNGQTYV 150 (445)
Q Consensus 74 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~y~ 150 (445)
-|...|-.|-.+|...|+.+.|..-|....+.. .++...+..+-.++.... ...++..+|++....+ +-|..+-.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 367788888888888888888888888887653 245566666655554433 3467888888887754 23566666
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
.+-..+...|++.+|...++.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777888888888888888888763
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.65 E-value=2.7 Score=36.49 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV-AVY---NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 153 (445)
.|..-.. +.+.|++++|.+.|+++...- |+. ..- =.+..++.+.+++++|...|++..+.-..-...-|...+
T Consensus 35 ~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQ-KLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3444443 456899999999999998753 433 222 235577889999999999999998752221223444445
Q ss_pred HHHH
Q 013323 154 NACA 157 (445)
Q Consensus 154 ~~~~ 157 (445)
.+.+
T Consensus 112 ~g~~ 115 (243)
T PRK10866 112 RGLT 115 (243)
T ss_pred HHHh
Confidence 5443
No 199
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=3 Score=35.73 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCccHH-HHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcc
Q 013323 124 CKNSDQAIRIFEEMKK---YE-VKPNGQ-TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK----FCYAGLITAHTNK 194 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~---~g-~~p~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~ 194 (445)
..+.++.++++.++.. +| ..|+.. .|..++-+....|+.+-|..+++.+...- |.. .....++.+-.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~-- 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATG-- 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhh--
Confidence 4578889999888864 34 556644 57778888888999999999999988763 332 22333444433
Q ss_pred CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHH
Q 013323 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274 (445)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 274 (445)
.. +.|.++++.+...+ +.|..+|--=+...-..|+--
T Consensus 101 -~~--~~A~e~y~~lL~dd----------------------------------------pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 101 -NY--KEAIEYYESLLEDD----------------------------------------PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred -ch--hhHHHHHHHHhccC----------------------------------------cchhHHHHHHHHHHHHcCCcH
Confidence 22 77888888776543 567777776666666667655
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHhHhhcCChhh--H-HHHH
Q 013323 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP-PAELYATLVEGAMFGYTPKG--M-QLAQ 350 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~g--~-~~a~ 350 (445)
+|.+-+....+. +..|...|.-+-..|...|++++|.-.++++.-. .| ++-.|..+-+.+ |...| . ..+.
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~---Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVL---YTQGGAENLELAR 211 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH---HHHhhHHHHHHHH
Confidence 666666655543 5568888999999999999999999999888765 33 344444444432 44444 2 6778
Q ss_pred HHHHHHHhCC
Q 013323 351 DTLVNMNSRN 360 (445)
Q Consensus 351 ~~~~~m~~~~ 360 (445)
+.+.+..+..
T Consensus 212 kyy~~alkl~ 221 (289)
T KOG3060|consen 212 KYYERALKLN 221 (289)
T ss_pred HHHHHHHHhC
Confidence 8888777643
No 200
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.28 E-value=0.69 Score=40.37 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=83.4
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhh
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDP 164 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~ 164 (445)
..+.+++++|...|.+..+.. +-|.+-|..--.+|++.|.++.|++=-+.-..- .|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 567899999999999999864 246777888899999999999999887777653 343 5689999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 013323 165 VYAIVRDMTAAGAGLDKFCYAGLITAH 191 (445)
Q Consensus 165 a~~~~~~m~~~g~~p~~~~~~~li~~~ 191 (445)
|.+.|++..+ +.|+..+|..=+...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 9999988777 578888877766544
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.26 E-value=0.33 Score=32.77 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=28.2
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
.+.+.++++.|.++++.+.+.+ +.+...|...-.++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555543 12344444455555555555555555555554
No 202
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.10 E-value=8.2 Score=39.84 Aligned_cols=65 Identities=8% Similarity=-0.079 Sum_probs=48.9
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChhhHHHHHHHHHhC
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN--IRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+.|...|..+..+|.+.|++..|.++|.+... ++|+.. |... -..-|..|.+.+|...+..+...
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66778899999999999999999999987655 456432 2222 22357789999999988887643
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.02 E-value=3.5 Score=38.35 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccc
Q 013323 146 GQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224 (445)
Q Consensus 146 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 224 (445)
...|...|+.-.|..-++.|..+|-+..+.| +.+++.+++++|..++...+ ..|-++|+.=...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~---~ta~~ifelGl~~------------ 461 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDR---ATAYNIFELGLLK------------ 461 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCc---chHHHHHHHHHHh------------
Confidence 4566667777777777777777777777776 46677777777777765432 5566666652221
Q ss_pred cchhhcccchhhhcchhhhhHHhhhcCcccCchhHH-HHHHHHHHhcccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 013323 225 AENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY-HVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYIVMQNIRC 301 (445)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~ 301 (445)
.||...| +-.+.-+...++-+.|..+|+.-.+. +..+ ...|..+|.-
T Consensus 462 -----------------------------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~Y 511 (660)
T COG5107 462 -----------------------------FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEY 511 (660)
T ss_pred -----------------------------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHH
Confidence 2332222 33455556666666677676643321 1112 3456666666
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 013323 302 YLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~ 320 (445)
-..-|++..+..+=+.|..
T Consensus 512 Es~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 512 ESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhhcchHHHHhHHHHHHH
Confidence 6666776666655555544
No 204
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.01 E-value=2.6 Score=33.83 Aligned_cols=134 Identities=12% Similarity=0.181 Sum_probs=83.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHH
Q 013323 60 LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEM 137 (445)
Q Consensus 60 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m 137 (445)
..+..+.+.+.|++|+...|..+++.+.+.|.+.. +.++.+.++-+|.......+-.+.... -..-|++.+.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 35566677778899999999999999998887654 455666666666555544443333221 123444444444
Q ss_pred HhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 138 ~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
. ..+..++..+...|++-+|..+.+..... +......++++-.+.++. ..--.++...+.
T Consensus 89 ~--------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~--~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G--------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD--QLFYAVFRFFEE 148 (167)
T ss_pred h--------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH--HHHHHHHHHHHH
Confidence 3 24777888888899999888888775332 222234566666665543 455555555554
No 205
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.01 E-value=4.6 Score=36.62 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHh
Q 013323 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 338 (445)
+.+..|.-|...|+...|.++-.+.+ .||...|-.-|.+++..++|++-.++... . -++.-|-..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~-- 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEA-- 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHH--
Confidence 45566777888899988888876653 48899999999999999999987775432 1 145778888884
Q ss_pred hcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHH
Q 013323 339 FGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393 (445)
Q Consensus 339 ~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m 393 (445)
|.+.|. .+|...+.++ ++..-+..|. +.|++.+|.+.--+.
T Consensus 247 --~~~~~~~~eA~~yI~k~----------~~~~rv~~y~--~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 --CLKYGNKKEASKYIPKI----------PDEERVEMYL--KCGDYKEAAQEAFKE 288 (319)
T ss_pred --HHHCCCHHHHHHHHHhC----------ChHHHHHHHH--HCCCHHHHHHHHHHc
Confidence 455666 7788877662 2244456666 999999997775444
No 206
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.37 E-value=5.5 Score=35.44 Aligned_cols=156 Identities=9% Similarity=0.058 Sum_probs=95.2
Q ss_pred HhcCcHhHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHhcCCChhHHHHHHHHHHHC--------CCCCCH----
Q 013323 52 TSQRRFFLLRDVYDDMMLDG--VQPTRD------LFHSLIVGTMKGSRLQDTFFFRDQMKAN--------GFLPDV---- 111 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g--~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~---- 111 (445)
.+.|+++.|..++.+....- ..|+.. .|+.-.+.+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998876632 334433 3555555555554777777666654322 123333
Q ss_pred -HHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 013323 112 -AVYNYLISVCGKCKNS---DQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186 (445)
Q Consensus 112 -~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 186 (445)
.+...++.+|...+.. ++|.++++.+.... |+ ..+|-.-+..+.+.++.+++.+++..|...-. -....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHH
Confidence 5678888899888775 45666777775442 33 45565667777778999999999999998622 13344555
Q ss_pred HHHHHHccCCCchHHHHHHHHHHH
Q 013323 187 LITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 187 li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
++..+....+.....+...++.+-
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l 184 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLL 184 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHH
Confidence 554442222222244444444433
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.37 E-value=4.3 Score=34.15 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHccCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 121 CGKCKNSDQAIRIFEEMKKY--EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+.+.|++++|.+.|+.+... +-+--....-.+..++-+.|+++.|...++...+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567777777777776653 11112334445666667777777777777776654
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.33 E-value=3.1 Score=32.43 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
...++..+.+.+.......+++.+...+ ..+...+|.++..|++.+ .++..++++. .++......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456777777788999999999998887 367889999999999764 3455555552 1344555668888888
Q ss_pred cCChhhHHHHHHHHHH
Q 013323 159 AGQLDPVYAIVRDMTA 174 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~ 174 (445)
.+.++++.-++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~ 97 (140)
T smart00299 82 AKLYEEAVELYKKDGN 97 (140)
T ss_pred cCcHHHHHHHHHhhcC
Confidence 8888888888877643
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.32 E-value=5.2 Score=39.03 Aligned_cols=269 Identities=10% Similarity=0.082 Sum_probs=133.8
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHhcCCChh--HHHHHHHHHHHCC
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDV---------YDDMMLDGVQPTRDLFHSLIVGTMKGSRLQ--DTFFFRDQMKANG 106 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~---------~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~g 106 (445)
.|..+.+.+=+..|..+|.+++|.++ |+.+-..- .+.-.++..=++|.+-.+.. +...-+++++++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 56666677777778888888887654 11111110 12223444455565555433 3334456777888
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH-----HHHHHHHcCChhhHHHHHHHHHH--cCCCC
Q 013323 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC-----LLNACAAAGQLDPVYAIVRDMTA--AGAGL 179 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~-----li~~~~~~g~~~~a~~~~~~m~~--~g~~p 179 (445)
-.|+... +...|+-.|++.+|-++|.+--..+ .-.+.|+- ..+-+...|..++-..+.++--+ ..++.
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence 7787664 4455666788888888876543211 01111221 12333344444433333332211 11211
Q ss_pred CHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhH
Q 013323 180 DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259 (445)
Q Consensus 180 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 259 (445)
....- +.+...|+. +.|..+... .+|.++ ++.+.. .+...+..+
T Consensus 706 PkaAA----EmLiSaGe~--~KAi~i~~d----~gW~d~------------------lidI~r--------kld~~ere~ 749 (1081)
T KOG1538|consen 706 PKAAA----EMLISAGEH--VKAIEICGD----HGWVDM------------------LIDIAR--------KLDKAEREP 749 (1081)
T ss_pred cHHHH----HHhhcccch--hhhhhhhhc----ccHHHH------------------HHHHHh--------hcchhhhhH
Confidence 11111 122233332 222222110 111110 000000 000223344
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHH------
Q 013323 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL-YAT------ 332 (445)
Q Consensus 260 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~------ 332 (445)
...+-..+.+...+..|.+||..|-+ ..++++.....++|++|+++-+...+. .||+.. |..
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhh
Confidence 44444555566667888888887754 245778888899999998887766543 333321 111
Q ss_pred -HHHhHhhcCChhhH-HHHHHHHHHHHhCCC
Q 013323 333 -LVEGAMFGYTPKGM-QLAQDTLVNMNSRNI 361 (445)
Q Consensus 333 -li~~~~~~~~~~g~-~~a~~~~~~m~~~~~ 361 (445)
.+.+ -.+|-+.|+ ++|..+++++....+
T Consensus 819 rFeEA-qkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 819 RFEEA-QKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hHHHH-HHHHHHhcchHHHHHHHHHhhhhhh
Confidence 1111 126788888 889999988875543
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.22 E-value=0.25 Score=33.93 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKD----RK-SPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
.+|+.+-..|...|++++|...+++..+. |- .|+ ..+++.+-..|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46888888899999999999999876542 21 122 45788888889999999999999887543
No 211
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.19 E-value=3.1 Score=36.51 Aligned_cols=115 Identities=8% Similarity=0.140 Sum_probs=74.9
Q ss_pred cHhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc-CC-ChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 013323 56 RFFLLRDVYDDMML-DGVQPTRDLFHSLIVGTMK-GS-RLQDTFFFRDQMKAN-GFLPDVAVYNYLISVCGKCKNSDQAI 131 (445)
Q Consensus 56 ~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~ 131 (445)
.+.+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...+|+.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455555553221 2344566677777766654 22 334444555555533 34577788888888888888888888
Q ss_pred HHHHHHHhC-CCCccHHHHHHHHHHHHHcCChhhHHHHHH
Q 013323 132 RIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170 (445)
Q Consensus 132 ~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 170 (445)
++++..... +..-|...|..+|+.-...|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888877655 556678888888888888888665554443
No 212
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.00 E-value=1.2 Score=38.85 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=79.1
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD-VAVYNYLISVCGKCKNS 127 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 127 (445)
-+.+.+++.+|++.|.+-.+. .| |.+-|..--.+|++.|..+.|.+=-+.....+ |. ..+|..|-.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcH
Confidence 345678999999999988775 44 55667777889999999999988777766633 43 46899999999999999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
++|++.|++-.+ +.|+-.+|-.=+..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999998876 57888877654443
No 213
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.94 E-value=2.3 Score=41.00 Aligned_cols=128 Identities=15% Similarity=0.078 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhc----ccHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhhHHHHHHHHHhCC--CC--CCHH
Q 013323 258 TVYHVAFHACAEL----KDVQAMETLLEMLKKDRKSPDVYIVMQNI-RCYLHSGDIDNGHKVFEDYICSE--KF--PPAE 328 (445)
Q Consensus 258 ~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~--~~--p~~~ 328 (445)
-.|..++..++.. .+.+.|.+++..+.+. -|+...|...- +.+...|++++|.+.|+...... .+ ....
T Consensus 230 L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~ 307 (468)
T PF10300_consen 230 LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLC 307 (468)
T ss_pred HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHH
Confidence 3466666655543 4688999999998864 57777766444 34556899999999999765421 11 1222
Q ss_pred HHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCCh-------hhHHHHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGY-------TTANYIWDLMQ 394 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~-------~~A~~~~~~m~ 394 (445)
.|...+. +.-..+ ++|.+.|..+.+.. ..+..+|.++..+| +...|+. ++|.++|.+..
T Consensus 308 ~~El~w~-----~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c-~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 308 YFELAWC-----HMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC-LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHH-----HHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH-HHhhccchhhhhhHHHHHHHHHHHH
Confidence 3333332 444555 99999999998865 34556666666444 5677877 88888988776
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.88 E-value=1.3 Score=41.42 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV----AVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
...|+.+-.++.+.|++++|...|+...+.+ |+. .+|..+-.+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555555555566666666665555532 432 2355555555556666666655555554
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=1.6 Score=38.21 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhh-H-HHHHHHHHHHHhCCCCCCcchh
Q 013323 291 DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG-M-QLAQDTLVNMNSRNIFLSPRMG 368 (445)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g-~-~~a~~~~~~m~~~~~~p~~~~~ 368 (445)
|...|..|-..|...|+.+.|..-|....+. -.+++..+..+-.++. |...+ . .++..+|+++...+ |+...-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~--~~a~~~~ta~a~~ll~~al~~D--~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALY--YQAGQQMTAKARALLRQALALD--PANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHH--HhcCCcccHHHHHHHHHHHhcC--CccHHH
Confidence 7888999999999999999999999987776 2235566666655542 33333 3 78999999998865 444433
Q ss_pred hH-HHHHhhcccCCChhhHHHHHHHHHHC
Q 013323 369 SD-LLLVAAGEKSGGYTTANYIWDLMQAR 396 (445)
Q Consensus 369 ~~-ll~~~~~~~~g~~~~A~~~~~~m~~~ 396 (445)
.. +-..+ ...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~a--fe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAA--FEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHH--HHcccHHHHHHHHHHHHhc
Confidence 33 33333 4899999999999999864
No 216
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.69 E-value=1.6 Score=35.65 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN--GQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
..+..+.+.|++.|+.++|.+.|.++.+....|. ...+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777888888888888888888777543333 45566777777778888887777766654
No 217
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.52 E-value=2.1 Score=37.59 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH-----cCCCCCHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA-----AGAGLDKFCYAG 186 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 186 (445)
.++..++..+...|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456678888889999999999999998865 34788999999999999999999999999866 588998888777
Q ss_pred HHHHH
Q 013323 187 LITAH 191 (445)
Q Consensus 187 li~~~ 191 (445)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 77664
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.46 E-value=5.1 Score=32.65 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CccHHHHH
Q 013323 72 VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPNGQTYV 150 (445)
Q Consensus 72 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~y~ 150 (445)
+-|+...--.|-.++.+.|+..+|...|++...-=+.-|....-.+-++....+++..|...++.+-+... ..++.+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34666666677777888888888888888877644455677777777777778888888888887765420 11233344
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 151 CLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
.+-+.+.-.|..++|..-|+.....-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 55667777788888888888877753
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.44 E-value=2.4 Score=39.78 Aligned_cols=63 Identities=14% Similarity=-0.019 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH----HHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG----QTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
+...|+.+-.+|.+.|++++|+..|++-.+. .|+. .+|..+-.+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555554442 2332 2355555555555555555555555544
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.43 E-value=3.8 Score=31.21 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
+....+..++.....|+-+.-.+++..+...+ ++++...-.+-.+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455677777788888888888888876432 577788888889999999999999999998888864
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.37 E-value=9.1 Score=35.35 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 290 PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 290 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.|-.-+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45667788899999999999999999999876
No 222
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=3.5 Score=36.46 Aligned_cols=104 Identities=12% Similarity=0.185 Sum_probs=75.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH
Q 013323 70 DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN---GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146 (445)
Q Consensus 70 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 146 (445)
.|......+...++..-.....++.+...+-.++.. ...|+...+ +++..+. .-++++++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 455556667777777777778888888887777653 122332222 2233222 34678899888888889999999
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 147 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
.+++.+|..+.+.+++.+|..+.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999998888777654
No 223
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.17 E-value=3 Score=32.54 Aligned_cols=99 Identities=10% Similarity=0.173 Sum_probs=52.9
Q ss_pred HHHHHCCCCCCHHH--HHHHHHHHhcCCChhHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHccCC-HHHHHHHHHH
Q 013323 65 DDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANG---F--LPDVAVYNYLISVCGKCKN-SDQAIRIFEE 136 (445)
Q Consensus 65 ~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~--~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~ 136 (445)
..|++.+..++..+ .|.++.-.+..+++....++++.+..-. + ..+-..|++++++.++..- ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 33444444444433 3445554455555555555555543211 0 1345566677776655544 2345566666
Q ss_pred HHhCCCCccHHHHHHHHHHHHHcCChh
Q 013323 137 MKKYEVKPNGQTYVCLLNACAAAGQLD 163 (445)
Q Consensus 137 m~~~g~~p~~~~y~~li~~~~~~g~~~ 163 (445)
|++.+.+++..-|..+|.++.+....+
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 666666667777777777766653333
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=92.15 E-value=1.4 Score=35.05 Aligned_cols=88 Identities=10% Similarity=-0.020 Sum_probs=70.4
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhH
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV 165 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a 165 (445)
+-..|++++|..+|.-+.-.+. -+..-|..|-.+|-..+++++|...|...-..+. -|...+-..-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3468999999999999987663 3555677777778888999999999987765543 3555666778899999999999
Q ss_pred HHHHHHHHHc
Q 013323 166 YAIVRDMTAA 175 (445)
Q Consensus 166 ~~~~~~m~~~ 175 (445)
...|....+.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 9999988874
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.02 E-value=4.5 Score=34.80 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHH
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKD-RKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYATL 333 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l 333 (445)
...|+.-+. -.+.|++++|.+.|+.+... ...| ...+.-.++.++-+.++++.|...+++.... +-.||. -|-.-
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y 112 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY 112 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence 344554443 45569999999999999854 2222 4556677788889999999999999998877 444444 34445
Q ss_pred HHhHhh--cCCh--hh--H-HHHHHHHHHHHhC----CCCCCcchhh------------HHHHHhhcccCCChhhHHHHH
Q 013323 334 VEGAMF--GYTP--KG--M-QLAQDTLVNMNSR----NIFLSPRMGS------------DLLLVAAGEKSGGYTTANYIW 390 (445)
Q Consensus 334 i~~~~~--~~~~--~g--~-~~a~~~~~~m~~~----~~~p~~~~~~------------~ll~~~~~~~~g~~~~A~~~~ 390 (445)
|.++.. .... +. . ..|..-|++..++ ...||...-- .+-.- |.+.|.+..|..-+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary--Y~kr~~~~AA~nR~ 190 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY--YLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH--HHHhcChHHHHHHH
Confidence 554421 1111 11 1 3344444454443 2222221111 11222 56999999999999
Q ss_pred HHHHHCCCCCCHHHHHH---HHhhhhccCCCCCCCchhhhh
Q 013323 391 DLMQARKITPSLPAVEA---YYNGLKDREVPADDPRLVVVS 428 (445)
Q Consensus 391 ~~m~~~~~~p~~~~~~~---l~~~~~~~~~~~~a~~~l~~~ 428 (445)
++|.+. ..-+..+..+ +.++|...|..++|.+..+++
T Consensus 191 ~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 191 EEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 999976 4444455444 457888889888888766555
No 226
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.99 E-value=15 Score=38.06 Aligned_cols=130 Identities=12% Similarity=-0.049 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCccHHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKPNGQTYVCLLNAC 156 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~y~~li~~~ 156 (445)
.|..|-..|+...+...|.+.|+...+.+ ..|...+..+.+.|++..+++.|..+.-.-.+.. ...-..-|-..--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 47777777777778888888888887754 2456778889999999999999988833322211 011122233333445
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
...++..++..-|+...+.. +-|...|..+..+|...|+. ..+.++|.....
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry--~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRY--SHALKVFTKASL 624 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCce--ehHHHhhhhhHh
Confidence 66777788888777776653 23677788888888888877 778888876553
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.95 E-value=3.6 Score=39.24 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=74.7
Q ss_pred HHHHhcCcHhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 013323 49 TSLTSQRRFFLLRDVYD-DMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
....-+++++.+.++.+ .-.-..+ | ..-.+.+++-+-+.|..+.|+++-.+-.. -.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 34455778888766664 1111112 2 44577888888888888888877654322 34456678888
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHH
Q 013323 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~ 207 (445)
+.|.++.++. .+...|..|-....+.|+++-|.+.|.+... +..++--|.-.|+. +...++-+
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~--~~L~kl~~ 397 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR--EKLSKLAK 397 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H--HHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH--HHHHHHHH
Confidence 8887765544 3666888888888888888888888876654 34444444445543 44455544
Q ss_pred HHH
Q 013323 208 LVE 210 (445)
Q Consensus 208 ~~~ 210 (445)
...
T Consensus 398 ~a~ 400 (443)
T PF04053_consen 398 IAE 400 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 228
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.92 E-value=9.1 Score=34.43 Aligned_cols=238 Identities=12% Similarity=0.057 Sum_probs=142.4
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHH--------------H--HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRD--------------L--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA 112 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--------------~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 112 (445)
..+.+.|.++.|..=|+...++. |+.. . ....+..+.-.|+...|......+.+.. +-|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 35677889999998888888764 3211 1 1223334556788888888888888754 24777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 192 (445)
.|..--.+|...|++.+|+.=++...+.. .-++.++--+-..+-..|+.+.++...++..+- .||....-..-.-+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl- 266 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL- 266 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH-
Confidence 88888888999999988876666554432 234556666667777788888888888877764 46654332222211
Q ss_pred ccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhh-hHHhhhc-CcccCchhHHHHHHHHHHhc
Q 013323 193 NKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA-EYVHRRG-GFLSRLLTVYHVAFHACAEL 270 (445)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-g~~~~~~~~~~~li~~~~~~ 270 (445)
....+.++.+++...- ..+...... ...+... .........+..+-.++...
T Consensus 267 -------kKv~K~les~e~~ie~-------------------~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 267 -------KKVVKSLESAEQAIEE-------------------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred -------HHHHHHHHHHHHHHhh-------------------hhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 1122222222221100 000000000 0011110 00011122334455556667
Q ss_pred ccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 271 KDVQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 271 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+++.+|.+.-.+..+ +.|| +.++.--..+|.-...++.|+.=|+...+.
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 889999888888765 4564 778888888888888888888888877664
No 229
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.92 E-value=2.3 Score=37.31 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCccHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK-----YEVKPNGQTYVCL 152 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~y~~l 152 (445)
++..++..+...|+.+.+...++++.... +-+...|-.+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45666777788999999999999999875 35889999999999999999999999998865 5899988887766
Q ss_pred HHH
Q 013323 153 LNA 155 (445)
Q Consensus 153 i~~ 155 (445)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 665
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.92 E-value=11 Score=35.33 Aligned_cols=374 Identities=9% Similarity=-0.014 Sum_probs=170.8
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhcCCChhHHHHHHHHHHHC--CCC-----------
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVG--TMKGSRLQDTFFFRDQMKAN--GFL----------- 108 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~--g~~----------- 108 (445)
-+.+|++|... +.+.....+..+.+. .| ...|-.+..+ +-+.+++..|.+.+..=.+. +-+
T Consensus 49 ~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 49 GGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred hhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 34556665543 344444444444332 13 2334444443 23567777777766654433 222
Q ss_pred -CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCccHHHHHHHHHHHHHcCCh---------------hhHHHH
Q 013323 109 -PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE----VKPNGQTYVCLLNACAAAGQL---------------DPVYAI 168 (445)
Q Consensus 109 -p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~y~~li~~~~~~g~~---------------~~a~~~ 168 (445)
+|..-=++..+++.+.|.+.++..++++|...= ..-+..+|+-++-.+++.--+ +.+.-.
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 223334667777788888888888877776543 335777787766665553211 222222
Q ss_pred HHHHHHc------CCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccc-cccccchhhcccchhhhcchh
Q 013323 169 VRDMTAA------GAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET-SGNNAENEMMGVSKEELYNLP 241 (445)
Q Consensus 169 ~~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 241 (445)
.++|... .+.|.......++...+-.......-..++++..+....-+...- ........+. ..+++..+.
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 3333221 244555555555554433211101112233333322111000000 0000000111 111111111
Q ss_pred hhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHH---------------------HHHHH--
Q 013323 242 TAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY---------------------IVMQN-- 298 (445)
Q Consensus 242 ~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------------------~~~~l-- 298 (445)
...-..........-..+|..++....+.+....|.+.+..++-. .|+.. .|+.+
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 111000000011223357888888888888888888887766532 22211 11111
Q ss_pred -------------------------HHHHHhcCC-hhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCCh----hhHHH
Q 013323 299 -------------------------IRCYLHSGD-IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP----KGMQL 348 (445)
Q Consensus 299 -------------------------i~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----~g~~~ 348 (445)
..-+-+.|. -++|+++++.+..-. .-|...-|......-.+|.. +...+
T Consensus 361 yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 011112232 456666666665541 12444444443311112211 11133
Q ss_pred HHHHHHHHHhCCCCCCcc----hhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCch
Q 013323 349 AQDTLVNMNSRNIFLSPR----MGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRL 424 (445)
Q Consensus 349 a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 424 (445)
-..+-+-..+.|+.|-.+ .-|.+-.+-.+...|++.++...-.-+ ..|.|++.+|.-+--.+.......+|-.+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL--~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL--TKIAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH--HHhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444455777766443 234444444456788888874433222 35788999988776555555555555554
Q ss_pred hhhh
Q 013323 425 VVVS 428 (445)
Q Consensus 425 l~~~ 428 (445)
+..+
T Consensus 518 l~~L 521 (549)
T PF07079_consen 518 LQKL 521 (549)
T ss_pred HHhC
Confidence 4443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.72 E-value=13 Score=35.88 Aligned_cols=167 Identities=9% Similarity=0.073 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHhcCCccccc
Q 013323 149 YVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLD-----KFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVET 220 (445)
Q Consensus 149 y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~ 220 (445)
+..++...+=.|+-+.+++.+.+-.+. |+.-. .-+|..++..++.. ...+.+.+.++++.+.+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-------- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-------- 262 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------
Confidence 344555556678888888888876653 33221 23355555555554 455667788888887765
Q ss_pred cccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH-HHhcccHHHHHHHHHHHHhC--CC-CCCHHHHH
Q 013323 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA-CAELKDVQAMETLLEMLKKD--RK-SPDVYIVM 296 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~ 296 (445)
.|+...|...-.- +...|++++|.+.|+..... .. +.....+-
T Consensus 263 ---------------------------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 263 ---------------------------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF 309 (468)
T ss_pred ---------------------------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence 6777666554433 45578999999999975532 11 22334455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChh----hH-HHHHHHHHHHH
Q 013323 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK----GM-QLAQDTLVNMN 357 (445)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~----g~-~~a~~~~~~m~ 357 (445)
-+.-.+.-.+++++|.+.|..+.+..-- +..+|.-+..++.....+. .. ++|.++|.+..
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 5677788899999999999999987322 3444444444432222222 12 67777777654
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.71 E-value=14 Score=36.22 Aligned_cols=221 Identities=13% Similarity=0.087 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHhcCcHh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC----CCCCHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFF--LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG----FLPDVAVY 114 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~ 114 (445)
.-.++..=.+|.+.++.. +...=+++|++.|-.|+..... ..|+-.|.+.+|-++|.+--..+ +-.|...|
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF 674 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF 674 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 334555556777766543 3444457788888889866433 33444566666666664432111 00111111
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh--CCCCccHHHHHHHHHHHHHcCChhhHHHHHHH------HHHcCCCCCH---HH
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKK--YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRD------MTAAGAGLDK---FC 183 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~------m~~~g~~p~~---~~ 183 (445)
. ...-+...|..++-..+.++--+ .+++-. .+....+..+|+.++|..+.-+ +.+-+-+.|. .+
T Consensus 675 D-~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~ 749 (1081)
T KOG1538|consen 675 D-YAQEFLGSGDPKEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP 749 (1081)
T ss_pred H-HHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence 1 23334455555544444433221 111111 2233444456777776655321 1121222222 22
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHH
Q 013323 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA 263 (445)
Q Consensus 184 ~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 263 (445)
...+-..+.+.... ..|.++|..|.+. .++
T Consensus 750 l~~~a~ylk~l~~~--gLAaeIF~k~gD~------------------------------------------------ksi 779 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSP--GLAAEIFLKMGDL------------------------------------------------KSL 779 (1081)
T ss_pred HHHHHHHHhhcccc--chHHHHHHHhccH------------------------------------------------HHH
Confidence 22222222333222 5566666665532 234
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 264 FHACAELKDVQAMETLLEMLKKDRKSPDVY-----------IVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 264 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
++.....+++++|..+-+..-+ +.||++ -|...=.+|.++|+-.+|.++++.+...
T Consensus 780 VqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 4555566677777766655432 333332 1233345677788888888888777654
No 233
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.39 E-value=10 Score=34.07 Aligned_cols=143 Identities=10% Similarity=0.018 Sum_probs=82.5
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhcCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV---GTMKGSRLQDTFFFRDQMKANGFLPDVAVYN-YLISVC 121 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~ 121 (445)
-+=..+.-+|++..|+.-|....+ -|...|.++.+ .|...|+-.-|+.=++...+. +||-..-. ---..+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 344566667777777777776643 34455555543 355566666666666666653 46533211 112345
Q ss_pred HccCCHHHHHHHHHHHHhCCCC------------ccHHHH--HHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CHHHHHH
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVK------------PNGQTY--VCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAG 186 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~------------p~~~~y--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ 186 (445)
.+.|.++.|..=|+...+.... +....| ...+..+.-.|+...|.+....+.+- .| |...|..
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~ 194 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQA 194 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHH
Confidence 6788888888888887764311 111122 22345556667888888877777764 33 4444555
Q ss_pred HHHHHHccCC
Q 013323 187 LITAHTNKIP 196 (445)
Q Consensus 187 li~~~~~~~~ 196 (445)
--.+|...|+
T Consensus 195 Rakc~i~~~e 204 (504)
T KOG0624|consen 195 RAKCYIAEGE 204 (504)
T ss_pred HHHHHHhcCc
Confidence 5556666554
No 234
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=1.6 Score=38.41 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=77.9
Q ss_pred hcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 013323 34 RRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDG---VQPT--RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108 (445)
Q Consensus 34 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 108 (445)
.+|...+..+-..++..-....+++.+...+-.++..- ..|+ ..+|..++.- =+.+++..++..=.+.|+-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccc
Confidence 44556677777777887777889999998888776531 2233 2233333332 3667999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 109 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
||-++++.+|+.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777643
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.85 E-value=3.9 Score=35.44 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCc-cHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANG----FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKP-NGQTYVC 151 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p-~~~~y~~ 151 (445)
.|+..+..+ +.|++..|...|....+.. +.|+..-| |-.++...|++++|..+|..+.+. +-.| -+..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 466666544 4556777777777776542 23344444 666777777777777777776653 1111 2355666
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHc
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+-.+..+.|+.++|..+|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666667777777777777777665
No 236
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.32 E-value=9.9 Score=31.93 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=34.3
Q ss_pred HhcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 86 TMKGSRLQDTFFFRDQMKANGF--LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
+...|++++|.+.|+.+...-- +--....-.+..++.+.|+++.|...|+++...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4457778888888887775421 111234445667777888888888888887653
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.23 E-value=15 Score=33.83 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=49.8
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP---DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.....+|..+...+.+.|.++.|...+..+...+..+ +..+.-.-....-..|+-++|...++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445678889999999999999999999887643211 2233333455667788999999999888873
No 238
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.18 E-value=5.2 Score=28.55 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
|.-++.+-++.+....+.|+.....+-+.+|.+.+++..|.++|+.++.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 55667777788888889999999999999999999999999999988865 2224567888876
No 239
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.00 E-value=5.4 Score=28.79 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 273 VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 273 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
.-+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.+ +.+....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 4466777777777889999999999999999999999999999999877 2223338888887
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.84 E-value=5.4 Score=32.66 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCccHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD--VAVYNYLISVCGKCKNSDQAIRIFEEMKKY---EVKPNGQTYVCL 152 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~y~~l 152 (445)
.+..+..-+++.|+.+.|.+.|..+.+....|. ...+-.+|......+++..+...+.+.... |-.++...--.+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 466666777777777777777777776543333 345566777777777777777666655432 111111111111
Q ss_pred HHH--HHHcCChhhHHHHHHHHHH
Q 013323 153 LNA--CAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 153 i~~--~~~~g~~~~a~~~~~~m~~ 174 (445)
..+ +...+++.+|-+.|-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 111 2335677777777666543
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.72 E-value=13 Score=35.62 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
....+.+++.+-+.|..+.|+++-.+- ..-+....+.|+++.|.++-++. .+...|..|-+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 344789999999999999999885432 12344566788888887765443 477799999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
..+.|+++-|++.|.+... |..++--|.-.|+.++..++.+.....|
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999999999999888764 7788888888888888888887777766
No 242
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.35 E-value=17 Score=33.37 Aligned_cols=268 Identities=12% Similarity=0.075 Sum_probs=151.4
Q ss_pred CCChhhHHHHHHHHH--hcCcHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HH
Q 013323 38 ANNASEYNTVVTSLT--SQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD-VA 112 (445)
Q Consensus 38 ~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 112 (445)
+-|..-.-.++.+-. -.|+.+.|.+-|+.|... |.... ..-|.-..-+.|+.+.|.+.-+..-... |. ..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~W 189 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPW 189 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCch
Confidence 344444444444333 358899999999998753 43332 2233334457788888888777766543 33 56
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHH--HHHHHHHHHH---cCChhhHHHHHHHHHHcCCCCCHHHHH-
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQT--YVCLLNACAA---AGQLDPVYAIVRDMTAAGAGLDKFCYA- 185 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~--y~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~- 185 (445)
.+.+++...|..|+++.|+++++.-+.. -+.++..- -..++.+-.. .-+...|...-.+- ..+.||..--.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--NKLAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHH
Confidence 7889999999999999999999887654 34444322 1222222211 12233333333222 23455543322
Q ss_pred HHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHH
Q 013323 186 GLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFH 265 (445)
Q Consensus 186 ~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~ 265 (445)
..-.++.+.|+. .++-++++.+=+. .|...++ .+-
T Consensus 268 ~AAralf~d~~~--rKg~~ilE~aWK~-----------------------------------------ePHP~ia--~lY 302 (531)
T COG3898 268 VAARALFRDGNL--RKGSKILETAWKA-----------------------------------------EPHPDIA--LLY 302 (531)
T ss_pred HHHHHHHhccch--hhhhhHHHHHHhc-----------------------------------------CCChHHH--HHH
Confidence 223456677665 7777777765543 2333322 223
Q ss_pred HHHhcccHHHHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCCh
Q 013323 266 ACAELKDVQAMETLLEMLKK-DRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP 343 (445)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~~-~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 343 (445)
...+.|+.... =++..++ ..++| +..+.-.+..+-...|++..|..--+.... ..|....|..|-+. .-+.
T Consensus 303 ~~ar~gdta~d--RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdI---eeAe 375 (531)
T COG3898 303 VRARSGDTALD--RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADI---EEAE 375 (531)
T ss_pred HHhcCCCcHHH--HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHH---Hhhc
Confidence 34555552211 1111111 12345 445566677777788888877765554433 45677777777663 3466
Q ss_pred hhH-HHHHHHHHHHHhCCCCCC
Q 013323 344 KGM-QLAQDTLVNMNSRNIFLS 364 (445)
Q Consensus 344 ~g~-~~a~~~~~~m~~~~~~p~ 364 (445)
.|+ .++...+.+-.+.--.|+
T Consensus 376 tGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 376 TGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred cCchHHHHHHHHHHhcCCCCCc
Confidence 677 888888888776544443
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.57 E-value=28 Score=34.71 Aligned_cols=87 Identities=5% Similarity=-0.041 Sum_probs=52.8
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHH-CCCCCCHH--------HHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMML-DGVQPTRD--------LFHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 108 (445)
.|.+..|..+..+....-.++.|...|-+... .|++.-.. .-.+=++++ -|.+++|+++|-+|.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 58888888888777777788888877766544 23321111 111122222 4888899988888877543
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 013323 109 PDVAVYNYLISVCGKCKNSDQAIRIFE 135 (445)
Q Consensus 109 p~~~~~~~ll~~~~~~g~~~~a~~~~~ 135 (445)
.|..+.+.|++-...++++
T Consensus 766 --------Aielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHH
Confidence 4555556666655544443
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.47 E-value=1.2 Score=25.21 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=12.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEE 136 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~ 136 (445)
|+.|-+.|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 245
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.41 E-value=0.24 Score=38.93 Aligned_cols=84 Identities=8% Similarity=0.133 Sum_probs=50.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCC
Q 013323 82 LIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161 (445)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 161 (445)
+++.+.+.+..+....+++.+...+-..+....|.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566666777777777777776655556777777777777777667766666611 11233455555566666
Q ss_pred hhhHHHHHHHH
Q 013323 162 LDPVYAIVRDM 172 (445)
Q Consensus 162 ~~~a~~~~~~m 172 (445)
++++.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66665555543
No 246
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.18 E-value=11 Score=29.51 Aligned_cols=94 Identities=10% Similarity=0.109 Sum_probs=46.9
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHHHHcCC-hhhHHHHHHHH
Q 013323 101 QMKANGFLPDV--AVYNYLISVCGKCKNSDQAIRIFEEMKKYE-----VKPNGQTYVCLLNACAAAGQ-LDPVYAIVRDM 172 (445)
Q Consensus 101 ~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m 172 (445)
.|.+.+..+++ ...|.+++-...-++....+.+++.+..-. -..+..+|.+++.+.++..- ---+..+|+.|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34444444433 234555555555555555555555443210 01244556666666544443 23345555666
Q ss_pred HHcCCCCCHHHHHHHHHHHHcc
Q 013323 173 TAAGAGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 173 ~~~g~~p~~~~~~~li~~~~~~ 194 (445)
++.+.+++..-|..+|.++.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 6555566666666666655543
No 247
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.01 E-value=4.1 Score=29.07 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 96 FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 96 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
.+-++.+....+.|++.+.++.+++|-|.+|+..|.++|+..+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=8.6 Score=35.36 Aligned_cols=125 Identities=13% Similarity=0.008 Sum_probs=84.9
Q ss_pred HHhcCCChhHHHHHHHHHHHC-----CCC---------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHH
Q 013323 85 GTMKGSRLQDTFFFRDQMKAN-----GFL---------PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYV 150 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~-----g~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~ 150 (445)
.+.+.|++..|..-|+..... +.. .-..+++.|.-+|.+.+++..|++.-+.....+ ++|.-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 355667777777776664321 111 234577888889999999999999988888765 34665666
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
-=-.++...|+++.|...|+.+.+. .|+......=|..|.+.-+...+...++|..|-..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677888899999999999999984 67777666666555443222224456666665543
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.14 E-value=8.4 Score=29.99 Aligned_cols=71 Identities=7% Similarity=0.010 Sum_probs=39.5
Q ss_pred cCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 88 KGSRLQDTFFFRDQMKANG--FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
+.|++++|.+.|+.+..+= -+-....--.|+.+|.+.+++++|...+++..+..-.-...-|...+.+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4667777777777666541 0112334445666777777777777777776654211112345555555444
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.09 E-value=21 Score=31.71 Aligned_cols=134 Identities=11% Similarity=0.038 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChhhHHHHHHHHHhCCCCCCHH-HHHH
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCY---LHSGDIDNGHKVFEDYICSEKFPPAE-LYAT 332 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ 332 (445)
..+|-.-+..+.+.++.+.+.+++..|...- ......+..++..+ .... ...|...++.+....+.|... ....
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~ 198 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEK 198 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3456566777777899999999999998762 21233444444444 4433 356666777666665666554 2222
Q ss_pred HHHhHhhcCCh------hhH-HHHHHHHHHHHhC-CCCCCcchhhHHHHHhh-----cccCCChhhHHHHHHH
Q 013323 333 LVEGAMFGYTP------KGM-QLAQDTLVNMNSR-NIFLSPRMGSDLLLVAA-----GEKSGGYTTANYIWDL 392 (445)
Q Consensus 333 li~~~~~~~~~------~g~-~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~-----~~~~g~~~~A~~~~~~ 392 (445)
++-..+-...+ ... +.+.++++...+. +-+.+..+-.++..... ..+.++++.|...|+-
T Consensus 199 ~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 199 LVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 21111001122 112 4444555543322 22233333222221111 3389999999988874
No 251
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.66 E-value=1.7 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 013323 294 IVMQNIRCYLHSGDIDNGHKVFEDYI 319 (445)
Q Consensus 294 ~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (445)
+|+.|-..|.+.|++++|.++|+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888744
No 252
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.41 E-value=39 Score=34.06 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=47.6
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHHCCCCCCHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-------LQDTFFFRDQMKANGFLPDVA 112 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~ 112 (445)
|...--++|-.|.|.|+.++|.++..... .........|...+..+....+ .+....-|++..+.....|++
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33444588999999999999999996654 3355566778888888876532 234455566555544322543
Q ss_pred ---HHHHH
Q 013323 113 ---VYNYL 117 (445)
Q Consensus 113 ---~~~~l 117 (445)
+|.++
T Consensus 189 K~AvY~il 196 (613)
T PF04097_consen 189 KRAVYKIL 196 (613)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.74 E-value=5.7 Score=30.91 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKD-RKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 333 (445)
....|+.-.. ..+.|++++|.+.|+.+... ...| ....--.|+.+|.+.|+++.|...+++.++..-.-.-.-|...
T Consensus 10 ~~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3344554444 44568999999999998765 1112 3345556889999999999999999998887433233556666
Q ss_pred HHhH
Q 013323 334 VEGA 337 (445)
Q Consensus 334 i~~~ 337 (445)
+.++
T Consensus 89 ~~gL 92 (142)
T PF13512_consen 89 MRGL 92 (142)
T ss_pred HHHH
Confidence 6643
No 254
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=85.56 E-value=3 Score=25.46 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=28.0
Q ss_pred hHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHh
Q 013323 369 SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYN 410 (445)
Q Consensus 369 ~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 410 (445)
..++.+. +.|-+.++..++++|.+.|+..++..|+.+++
T Consensus 7 GiL~~Ak---~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 7 GILLLAK---RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHH---HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3444444 67777788888888888888888877777665
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.22 E-value=17 Score=28.91 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHhcCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGF-LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
.-.+.++.+++..+++-+.-..- .|...++...+ +.+.|++.+|..+|+++.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 33455566666666666665320 12223333333 34566677777777766553
No 256
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.78 E-value=13 Score=26.98 Aligned_cols=42 Identities=5% Similarity=0.083 Sum_probs=18.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 013323 62 DVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 62 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
.-++.+....+.|+.....+.+++|.+.+++..|.++|+-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444555555555555555555555555554444
No 257
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.69 E-value=28 Score=30.79 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=49.3
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (445)
.++..+...+|..+++.+++....++++..... +..-|...|..+|......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 556667788899999999999999888876654 555688889999999999998776655544
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=84.23 E-value=15 Score=28.03 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=66.5
Q ss_pred HHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHH-hHhhcCCh
Q 013323 266 ACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYATLVE-GAMFGYTP 343 (445)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~-~~~~~~~~ 343 (445)
+++..|+++.|.+.|...... .+-....||.-..++.-.|+.++|++=+++..+. |-+ +...+.+.+. ++ -|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~--lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGL--LYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHH--HHHH
Confidence 467889999999999887653 2237788999999999999999999988888776 433 3344444443 33 2455
Q ss_pred hhH-HHHHHHHHHHHhCC
Q 013323 344 KGM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 344 ~g~-~~a~~~~~~m~~~~ 360 (445)
.|+ +.|..-|+..-+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 666 78888887777666
No 259
>PRK15331 chaperone protein SicA; Provisional
Probab=83.84 E-value=11 Score=30.15 Aligned_cols=92 Identities=10% Similarity=-0.055 Sum_probs=67.6
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
..-..+...|++++|..+|.-+.-.+. -|..-|..|-..+-..++++.|...|...-..+. -|...+=..-.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 344556788999999999999987543 2334445555556667899999999998776543 23333444567888999
Q ss_pred CHHHHHHHHHHHHh
Q 013323 126 NSDQAIRIFEEMKK 139 (445)
Q Consensus 126 ~~~~a~~~~~~m~~ 139 (445)
+.+.|..-|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998876
No 260
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.58 E-value=43 Score=32.18 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=130.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH----
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN---- 154 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~---- 154 (445)
...+.++.-+..+++.+.+-++...+.. -++.-++..-.+|...|.+..+...-+.-.+.|-. ...-|+.+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4455556666777888888887777754 55666777777888888877766666555544421 2223333333
Q ss_pred ---HHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcc
Q 013323 155 ---ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMG 231 (445)
Q Consensus 155 ---~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (445)
+|.+.++.+.+...|.+....-..|+..+-. ..+++....-......
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~l--------------k~~Ek~~k~~e~~a~~---------------- 353 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKL--------------KEAEKALKEAERKAYI---------------- 353 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHH--------------HHHHHHHHHHHHHHhh----------------
Confidence 4444566677777777655443333322211 1122222111111000
Q ss_pred cchhhhcchhhhhHHhhhcCcccCch-hHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 013323 232 VSKEELYNLPTAEYVHRRGGFLSRLL-TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310 (445)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 310 (445)
.|+. .-.-.--..+.+.|++..|...+.++.... +-|...|..--.+|.+.|.+..
T Consensus 354 ----------------------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 354 ----------------------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred ----------------------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHH
Confidence 1111 001111334667899999999999988754 3477899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhh
Q 013323 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAA 376 (445)
Q Consensus 311 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 376 (445)
|+.=-+.-++. ++......++-.. ++..-.. +.|++.|.+-.+.+ |+..-+..-+.-|.
T Consensus 411 aL~Da~~~ieL----~p~~~kgy~RKg~-al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 411 ALKDAKKCIEL----DPNFIKAYLRKGA-ALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHhc----CchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 88865555544 3333333333110 1111123 77777777776654 44443333333343
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.50 E-value=56 Score=33.43 Aligned_cols=154 Identities=11% Similarity=0.101 Sum_probs=92.9
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHH----HHCC------------CCCCHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDM----MLDG------------VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
+..+.+.++.++...+++-.-.-+++.. ...+ .....-+...-|+.+.+...++.|..+-+
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk--- 358 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAK--- 358 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHH---
Confidence 4455677888888887764433333333 2222 01112234445555666666666655443
Q ss_pred HCCCCCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC
Q 013323 104 ANGFLPDVAVYNYLISV----CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179 (445)
Q Consensus 104 ~~g~~p~~~~~~~ll~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (445)
..+ .|..+-..+... +.+.|++++|...|-+-... +.| ..+|.-|.....+..-..+++.+.+.|+.
T Consensus 359 ~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla- 429 (933)
T KOG2114|consen 359 SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA- 429 (933)
T ss_pred hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-
Confidence 333 233333444444 45689999998887665531 122 45677777777888888899999999875
Q ss_pred CHHHHHHHHHHHHccCCCchHHHHHHHH
Q 013323 180 DKFCYAGLITAHTNKIPRADDTATKIIE 207 (445)
Q Consensus 180 ~~~~~~~li~~~~~~~~~~~~~a~~~~~ 207 (445)
+......|+.+|.+.++. +....+.+
T Consensus 430 ~~dhttlLLncYiKlkd~--~kL~efI~ 455 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDV--EKLTEFIS 455 (933)
T ss_pred cchhHHHHHHHHHHhcch--HHHHHHHh
Confidence 666667888999998754 44444433
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.94 E-value=5.4 Score=23.63 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 295 VMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+..+-.+|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555566666666666666665554
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.78 E-value=4.9 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=10.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
.+-..|.+.|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.14 E-value=10 Score=32.93 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCH-HHHHH
Q 013323 259 VYHVAFHACAELKDVQAMETLLEMLKKDR----KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPA-ELYAT 332 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~-~~~~~ 332 (445)
.|+..+..+- .|++..|..-|....+.. ..||..-| |-.++...|++++|-.+|..+.+. +-.|.. ...--
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5776665554 355777777777766542 23333333 577777778888877777777665 222211 22222
Q ss_pred HHHhHhhcCChhhH-HHHHHHHHHHHhC
Q 013323 333 LVEGAMFGYTPKGM-QLAQDTLVNMNSR 359 (445)
Q Consensus 333 li~~~~~~~~~~g~-~~a~~~~~~m~~~ 359 (445)
|-. ...+.|. ++|..+|++..++
T Consensus 221 lg~----~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGV----SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHH----HHHHhcCHHHHHHHHHHHHHH
Confidence 222 2345555 7777777776665
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.94 E-value=3.8 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=11.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEM 137 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m 137 (445)
+++.|-..|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555444
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.69 E-value=27 Score=33.34 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=54.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITA 190 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~ 190 (445)
-|-.++-+.|+.++|.+.|++|.+. ...-+......++.++...+.+.++..++.+..+...+. -..+|+..+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3455566789999999999999754 222234577889999999999999999999986544332 24567765543
No 267
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.78 E-value=4.2 Score=23.36 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
..+++.|-..|...|++++|.+++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888888999988888887654
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.50 E-value=0.7 Score=36.28 Aligned_cols=86 Identities=12% Similarity=0.182 Sum_probs=61.2
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
.+|+.+.+.+.+......++.+...+..-+....+.++..|++.+..+...++++.. +..-...+++.|-+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 457777888889999999999988776667888999999999998878877777621 1122245667777777
Q ss_pred CHHHHHHHHHHHH
Q 013323 126 NSDQAIRIFEEMK 138 (445)
Q Consensus 126 ~~~~a~~~~~~m~ 138 (445)
.++++.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777776666543
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.48 E-value=47 Score=30.48 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=28.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
..+..+.|+++...++....... .++...|.++... +.++.+++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566677777655554444422 1234444444333 66677766666665544
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.48 E-value=69 Score=32.38 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=122.6
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC---------
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQ----PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN--------- 105 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------- 105 (445)
-.-.+|..+.+-....|+++.|..+++.=...+-. .+..-+...+.-+.+.|+.+....++-.+.+.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778888888888887765554321 13344666777777777777777666655432
Q ss_pred --CCCCCHHHHHHHHH--------HHHccCCHHHHHHHHH--HHH----hCCCCccHHHHHHHHHHHHHcCC--------
Q 013323 106 --GFLPDVAVYNYLIS--------VCGKCKNSDQAIRIFE--EMK----KYEVKPNGQTYVCLLNACAAAGQ-------- 161 (445)
Q Consensus 106 --g~~p~~~~~~~ll~--------~~~~~g~~~~a~~~~~--~m~----~~g~~p~~~~y~~li~~~~~~g~-------- 161 (445)
..+.....|--+++ .+.+.++-..+..-|. ... ..|..|+.. ..-+.|.+...
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHH
Confidence 11111222333332 1223443333333222 111 123334432 23333333322
Q ss_pred --hhhHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhc
Q 013323 162 --LDPVYAIVRDMTA-AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238 (445)
Q Consensus 162 --~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (445)
..+-+.+.+.+.. .|..-..-+.+-.+..+...|.. ..|.++-...+
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~--k~a~ql~~~Fk---------------------------- 711 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQN--KRAEQLKSDFK---------------------------- 711 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccch--HHHHHHHHhcC----------------------------
Confidence 1222333344433 23333334444444445555544 55666655433
Q ss_pred chhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 013323 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY 318 (445)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (445)
.||...|-.=+.+++..+++++.+++-..++. ..-|.-++.+|.+.|+.++|.+++...
T Consensus 712 ---------------ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 712 ---------------IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred ---------------CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 56777788888888888888887776655431 233555778888888888888887655
No 271
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.96 E-value=7 Score=32.38 Aligned_cols=80 Identities=5% Similarity=-0.125 Sum_probs=58.2
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHH---CCCCCCHHHHHHHHhhhhccCCC
Q 013323 342 TPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA---RKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 342 ~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
.+.|++.|...|-.+...+.--++.....+..-| -..+.++|..++.+..+ .+-.+|+..+.+|...+.+.|..
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY---~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYY---TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 5667788888888888877544444444444444 57788888888887774 34478888888898888888888
Q ss_pred CCCCch
Q 013323 419 ADDPRL 424 (445)
Q Consensus 419 ~~a~~~ 424 (445)
+.|..+
T Consensus 195 e~AYiw 200 (203)
T PF11207_consen 195 EQAYIW 200 (203)
T ss_pred hhhhhh
Confidence 777643
No 272
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.94 E-value=11 Score=35.84 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=35.9
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccC
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA--VYNYLISVCGKCK 125 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g 125 (445)
..++.|+.+.+.. +.+.|..|+... ..+.+..+++.|+.+ +.+.+.+.|..|+.. ...+.+...++.|
T Consensus 8 ~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3345555544333 334566555432 223344445556654 334444455444322 1122344455666
Q ss_pred CHHHHHHHHH
Q 013323 126 NSDQAIRIFE 135 (445)
Q Consensus 126 ~~~~a~~~~~ 135 (445)
+.+.+..+++
T Consensus 80 ~~~~v~~Ll~ 89 (413)
T PHA02875 80 DVKAVEELLD 89 (413)
T ss_pred CHHHHHHHHH
Confidence 6665554443
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.77 E-value=28 Score=27.39 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=39.9
Q ss_pred HhcccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 013323 268 AELKDVQAMETLLEMLKKDRKSPD---VYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322 (445)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 322 (445)
...+++++++.+++.|.- +.|+ ..++...+ +...|++++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 447899999999999876 3443 44555444 688999999999999998874
No 274
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=79.74 E-value=56 Score=30.93 Aligned_cols=169 Identities=8% Similarity=0.016 Sum_probs=98.9
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcC--------ChhhHHHHH-------H
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDR----KSPDVYIVMQNIRCYLHSG--------DIDNGHKVF-------E 316 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g--------~~~~a~~~~-------~ 316 (445)
|...=+..++++...|++.++..+++.+...- ...+..+||.++-.+.+.= ..+-+...| .
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence 33344567788899999999999999887653 4489999998776665431 122222222 2
Q ss_pred HHHhC------CCCCCHHHHHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchh-hHHHHHhhcccCCChhhHHHH
Q 013323 317 DYICS------EKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMG-SDLLLVAAGEKSGGYTTANYI 389 (445)
Q Consensus 317 ~m~~~------~~~p~~~~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~g~~~~A~~~ 389 (445)
.|... .+.|-...+..++..+. ..-.....--+++++.....-+.|+.... ..++..+. .+.+++..+
T Consensus 207 ki~~~d~~~Y~k~~peeeL~s~imqhlf-i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~----~~~e~~~~~ 281 (549)
T PF07079_consen 207 KIHAFDQRPYEKFIPEEELFSTIMQHLF-IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFM----SDPEQVGHF 281 (549)
T ss_pred HHHHHhhchHHhhCcHHHHHHHHHHHHH-hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHh----cChHHHHHH
Confidence 22221 34566667777776542 11222225556666666677777876533 33444332 266777777
Q ss_pred HHHHHHCCCCC----CHHHHHHHHhhhhccCCCCCCCchhhhhh
Q 013323 390 WDLMQARKITP----SLPAVEAYYNGLKDREVPADDPRLVVVSR 429 (445)
Q Consensus 390 ~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~l~~~~ 429 (445)
-+.+....+.| =..++..++....+.+....|...++.++
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66665443332 13456666666667777766666555543
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.63 E-value=28 Score=27.36 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=26.1
Q ss_pred cCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 88 KGSRLQDTFFFRDQMKANGF-LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
..++.+++..+++.|.-..- .|...+|...+ +.+.|++++|.++|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 35566666666666654320 12233333333 33556666666666666654
No 276
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.63 E-value=52 Score=30.51 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=83.4
Q ss_pred HHHhcCcHhHHHHHHHHHHH-----CCCCCC---------HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 013323 50 SLTSQRRFFLLRDVYDDMML-----DGVQPT---------RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~-----~g~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 115 (445)
.+.+.|++..|..-|+...+ .+..+. ..++..+...+.+.+++..|.+.=+.....+ ++|.-..=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 67788999999888887543 122221 2246666777889999999999988888765 34555544
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH-HHHHHHHcCCh-hhHHHHHHHHHH
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC-LLNACAAAGQL-DPVYAIVRDMTA 174 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~-li~~~~~~g~~-~~a~~~~~~m~~ 174 (445)
-=-.+|...|+++.|...|+.+.+. .|+...-.. ++.+--+.... +...++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788889999999999999884 566555444 44444443333 444677777765
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.48 E-value=32 Score=27.90 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV-YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE- 335 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 335 (445)
..|...++ ++..+..++|..-|..+.+.|..--. -.---.-......|+...|...|+++-...-.|-+.-=..=++
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 45655554 45667889999999999887643211 1111223445678999999999999987755554442222222
Q ss_pred hHhhcCChhhH-HHHHHHHHHHHhCCCCCCcch-hhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCC
Q 013323 336 GAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRM-GSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS 401 (445)
Q Consensus 336 ~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 401 (445)
++ .+..+|- +.+....+-+-..+- |-..+ -..|-.+. .|.|++..|.+.|.++..-.-.|-
T Consensus 139 a~--lLvD~gsy~dV~srvepLa~d~n-~mR~sArEALglAa--~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AY--LLVDNGSYDDVSSRVEPLAGDGN-PMRHSAREALGLAA--YKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HH--HHhccccHHHHHHHhhhccCCCC-hhHHHHHHHHhHHH--HhccchHHHHHHHHHHHccccCcH
Confidence 22 2455665 666666555544331 22222 12232223 399999999999999986444443
No 278
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=79.13 E-value=50 Score=29.97 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHHcCC----CCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhh
Q 013323 162 LDPVYAIVRDMTAAGA----GLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEEL 237 (445)
Q Consensus 162 ~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (445)
.+.|.+.|+.....+. ..+......++....+.|.. +....+++....
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~--~~~~~l~~~~~~-------------------------- 197 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDE--EEWDFLWELYKN-------------------------- 197 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--H--HHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhH--hhHHHHHHHHhc--------------------------
Confidence 3667777877776422 44566666677777776643 445555555443
Q ss_pred cchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--hhHHHH
Q 013323 238 YNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDR-KSPDVYIVMQNIRCYLHSGDI--DNGHKV 314 (445)
Q Consensus 238 ~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~ 314 (445)
.++...-..++.+++...+.+...++++.....+ +++.. . ..++.++...+.. +.+++.
T Consensus 198 ----------------~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~ 259 (324)
T PF11838_consen 198 ----------------STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEF 259 (324)
T ss_dssp ----------------TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHH
Confidence 3344556778888888888888888888877754 44433 3 3344444434433 556665
Q ss_pred HHH----HHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHH
Q 013323 315 FED----YICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVN 355 (445)
Q Consensus 315 ~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~ 355 (445)
+.. +.+. ...+......++..+...++.... ++..++|+.
T Consensus 260 ~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~ 304 (324)
T PF11838_consen 260 FKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEEFFED 304 (324)
T ss_dssp HHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 543 2222 222333556666632222233333 555555443
No 279
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.12 E-value=20 Score=25.91 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQ 350 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~ 350 (445)
..++|.-|-+.+...+-. ...+--+=+..+.+.|++++|.++.+.+ ..||...|-+|-. -+.|. +...
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce------~rlGl~s~l~ 88 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE------WRLGLGSALE 88 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH------HhhccHHHHH
Confidence 367888888877664422 2222223345677899999999987665 5799999999876 56777 6666
Q ss_pred HHHHHHHhCC
Q 013323 351 DTLVNMNSRN 360 (445)
Q Consensus 351 ~~~~~m~~~~ 360 (445)
.-+.+|..+|
T Consensus 89 ~rl~rla~sg 98 (115)
T TIGR02508 89 SRLNRLAASG 98 (115)
T ss_pred HHHHHHHhCC
Confidence 6677777777
No 280
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=77.96 E-value=38 Score=33.64 Aligned_cols=46 Identities=7% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCC
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLD--GVQPTRDLFHSLIVGTMKGSR 91 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~ 91 (445)
+|+.+|..+|++-++.++++.+... |-+.=...||..|+...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 4555555555555555555555432 112222334444444444444
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=76.91 E-value=59 Score=31.22 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=55.8
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHc
Q 013323 82 LIVGTMKGSRLQDTFFFRDQMKANG-FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAA 159 (445)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~ 159 (445)
+-..+.+.|+.++|.+.|.+|.+.. ..-...+.-.|+.++...+.+.++..++.+-.+...+.+ ...|+..+--+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3344557899999999999998653 222345777899999999999999999998765333222 45677766544433
Q ss_pred C
Q 013323 160 G 160 (445)
Q Consensus 160 g 160 (445)
+
T Consensus 345 ~ 345 (539)
T PF04184_consen 345 G 345 (539)
T ss_pred c
Confidence 3
No 282
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.70 E-value=57 Score=29.37 Aligned_cols=132 Identities=9% Similarity=0.037 Sum_probs=81.2
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCCHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS----EKFPPAE 328 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~ 328 (445)
..|...+++|..+ +..++++..+..+...++ |-.--...+-....-||+.|+.+.|++.++.-.+. |.+.|+.
T Consensus 67 ~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 5666666665543 222344554445544443 32222335566778899999999999998876554 7788877
Q ss_pred HHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcc----hhhHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPR----MGSDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
.+.+=+.- -|..+.. .+-.+..+.+.+.|-..+.. +|..+-. ....++.+|-.+|-+..
T Consensus 145 f~~iRlgl---fy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~----msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 145 FYKIRLGL---FYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC----MSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHH---hhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH----HHHHhHHHHHHHHHHHc
Confidence 77665542 2555555 67777777788887655543 4444332 24667888777765544
No 283
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.52 E-value=13 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=16.0
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
.+.|-.+++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 33444445555555555555555554444444
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.06 E-value=79 Score=31.95 Aligned_cols=117 Identities=10% Similarity=-0.043 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhHHHHHHHH
Q 013323 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTL 353 (445)
Q Consensus 274 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~~~a~~~~ 353 (445)
+...+.....-+.-+.++. ..-.....+.-.|++|.|.+.+-. ..+...+.+++.+.+..+ ++.+........++
T Consensus 241 ~~LQ~~i~~~Ge~~F~~~~-~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~--gLL~~~~~~~~~ll 315 (613)
T PF04097_consen 241 EDLQKLILKYGESHFNAGS-NPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY--GLLRVSDSSSAPLL 315 (613)
T ss_dssp HHHHHHHHHH-GGGCTT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT--T-------------
T ss_pred HHHHHHHHHhchhhcccch-hHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc--CCCCCCCcccccee
Confidence 3444444444444344421 222245566779999999999876 335567888888888743 33443332112222
Q ss_pred HHHHhCCCCCCcchhhHHHHHhh-cccCCChhhHHHHHHHHHHCCC
Q 013323 354 VNMNSRNIFLSPRMGSDLLLVAA-GEKSGGYTTANYIWDLMQARKI 398 (445)
Q Consensus 354 ~~m~~~~~~p~~~~~~~ll~~~~-~~~~g~~~~A~~~~~~m~~~~~ 398 (445)
..- ..+ |.+.-+..+|..|. ..+..+..+|...|-.+....-
T Consensus 316 s~~-~~~--~~~ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~ 358 (613)
T PF04097_consen 316 SVD-PGD--PPPLNFARLIGQYTRSFEITDPREALQYLYLICLFKD 358 (613)
T ss_dssp --------------HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-S
T ss_pred eec-CCC--CCCcCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCC
Confidence 111 111 22256777887776 4467788889999888775443
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.85 E-value=61 Score=28.79 Aligned_cols=145 Identities=7% Similarity=0.007 Sum_probs=90.5
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 128 (445)
......|++.+|..+|+......-+ +...-..+...+...|+.+.|..+++.+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3556778888888888877764321 334455666778888888888888888765422222222233445555555555
Q ss_pred HHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCC
Q 013323 129 QAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG-AGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~ 197 (445)
+...+-++.-. .| |...--.+-..+...|+.+.|.+.+-.+.++. ---|...-..+++.+.-.|..
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 55555555544 35 55666677788888999999888776665532 223556666666666655544
No 286
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.85 E-value=66 Score=29.17 Aligned_cols=114 Identities=7% Similarity=-0.032 Sum_probs=48.5
Q ss_pred hcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHH
Q 013323 53 SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA----VYNYLISVCGKCKNSD 128 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 128 (445)
-+|++.+|-..++++.+. .+.|...++..=.+|.-.|+...-...++.+... ..||.. +-...--++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345555555555555433 3334444555555555555555555555554432 012221 1122222333455555
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHH
Q 013323 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~ 169 (445)
+|++.-++-.+-+ +-|.-.-.++-..+-..|++.++.+.+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5555554444322 123333333333333444444444443
No 287
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=74.80 E-value=73 Score=29.64 Aligned_cols=174 Identities=11% Similarity=-0.017 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCccHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG---FLPDVAVYNYLISVCGK---CKNSDQAIRIFEEMKKYEVKPNGQT 148 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~ 148 (445)
+..+...++-.|....+++...++++.+...- +.-+..+--...-++-+ .|+.++|++++.......-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44444466666999999999999999998751 21122222233445556 8999999999998766666788888
Q ss_pred HHHHHHHHHHc---------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC--chHHHHHHHHH----HHHhc
Q 013323 149 YVCLLNACAAA---------GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR--ADDTATKIIEL----VEQSK 213 (445)
Q Consensus 149 y~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~--~~~~a~~~~~~----~~~~~ 213 (445)
|..+-..|-+. ..+++|...|.+--+. .||.++--.+...+.-.|+. ......++--. +.+.+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 88887776431 2356677777655443 24433322222222222221 11223333211 11111
Q ss_pred CCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC
Q 013323 214 GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286 (445)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 286 (445)
... ...+--.+.+++.++.-.|+.+.|.+..+.|.+.
T Consensus 298 ~~~------------------------------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLE------------------------------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccc------------------------------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 100 0234445677899999999999999999999865
No 288
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.77 E-value=35 Score=28.39 Aligned_cols=76 Identities=7% Similarity=0.022 Sum_probs=52.6
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA---GAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~ 196 (445)
-+.+.|+ +.|.+.|-.+...+.--|+.....+..-|. ..+.+++..++....+. +-.+|+..+.+|.+.+.+.++
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3555565 677777877877766556665555555555 57788888888777652 336788888888888887775
Q ss_pred C
Q 013323 197 R 197 (445)
Q Consensus 197 ~ 197 (445)
.
T Consensus 194 ~ 194 (203)
T PF11207_consen 194 Y 194 (203)
T ss_pred h
Confidence 4
No 289
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.56 E-value=24 Score=29.75 Aligned_cols=57 Identities=7% Similarity=-0.056 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQM 102 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 102 (445)
+.-|+.+.+.++..+++...++-.+.+ +.|..+-..++..+|-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334455555555555555554444432 123333444555555555555555444433
No 290
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.25 E-value=29 Score=26.33 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 274 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
-+..+-++.+..-.+.|+..+...-+.+|-+.+++..|.++|+-++.+ +.+....|..+++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 355666777777789999999999999999999999999999998876 3333446777776
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.08 E-value=91 Score=32.06 Aligned_cols=116 Identities=9% Similarity=0.067 Sum_probs=75.4
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIV----GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
.-|..+.+...++.|..+-+. .+. +..+...+.. -+.+.|++++|...|-+-... ++| ..+|.-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 345566666666666665443 333 3333333333 345789999998777655432 223 2366677
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
.....+..-..+++.+.+.|+. +...-+.||.+|.+.++.++..+..+.-.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 7777777788888888888874 55666889999999999888766665544
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.66 E-value=11 Score=20.41 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 147 QTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 147 ~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.+|..+-..+...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4566677777777777777777777665
No 293
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.24 E-value=9.8 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=14.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC
Q 013323 298 NIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
|-.+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=70.32 E-value=14 Score=19.99 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
.+|..+-.+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677888888899999999999988776
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.74 E-value=6.7 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHccCCHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a 130 (445)
+...|+.+-..|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344555555555555555554
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.72 E-value=56 Score=32.12 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=70.1
Q ss_pred HhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 013323 52 TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 131 (445)
.-.|+++.|-.++.... ...-+.+.+.+.+.|..++|+++- +|..- -.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHH
Confidence 34566666655444331 233455556666666666665432 33221 123345678888888
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
++..+.. +..-|..|-.+....+++..|.+.|..... |..|+-.+...|+.
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA 708 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence 8776654 556799999999999999999999887655 34555555555543
No 297
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=67.68 E-value=54 Score=25.21 Aligned_cols=54 Identities=2% Similarity=-0.065 Sum_probs=28.6
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (445)
+++..|+.+.|++.|.+-..- .+-+.+.||.--.++.-.|+.++|++=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 445556666666666554432 112444555555555555666665555555544
No 298
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.12 E-value=28 Score=28.91 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=43.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKD-RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
..+.......+.+......+...+. ...|+..+|..++.++...|+.++|.++..++..-
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444556666555555554432 46799999999999999999999999999888764
No 299
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.94 E-value=14 Score=22.09 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=11.8
Q ss_pred HHHHHHcCChhhHHHHHHHHHHc
Q 013323 153 LNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
-.+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34455555555555555555543
No 300
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.71 E-value=47 Score=25.23 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
.+-++.+...++.|++.....-+++|-|.+++..|..+|+-.+.+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344445555566677777777777777777777777777766553
No 301
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.44 E-value=1.2e+02 Score=28.83 Aligned_cols=132 Identities=13% Similarity=0.031 Sum_probs=68.0
Q ss_pred HHhcCCCCChhh--HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 013323 32 YARRNYANNASE--YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD--LFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107 (445)
Q Consensus 32 ~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 107 (445)
+.+.|..|+... ..+.++..+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++ .|.
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~ 92 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGK 92 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCC
Confidence 335566665433 234556667778865 445555667666543 12234555667788877655554 332
Q ss_pred CCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHH--HHHHHHHHHHcCChhhHHHHHHHHHHcCCCC
Q 013323 108 LPDVA---VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT--YVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179 (445)
Q Consensus 108 ~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (445)
..+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+- .+.+.+.|..+
T Consensus 93 ~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~----v~~Ll~~g~~~ 161 (413)
T PHA02875 93 FADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG----IELLIDHKACL 161 (413)
T ss_pred cccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhcCCCC
Confidence 11110 1123444455667664 4455555666554322 1234555556777554 44445555543
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.29 E-value=86 Score=26.64 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHh
Q 013323 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS--EKFPPAELYATLVEG 336 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 336 (445)
|.+.-++.+.+.+.+.++......=.+.. +.|.-+-..++..+|-.|++++|..-++..-.. ...+...+|..+|+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888888999988877655432 336667778899999999999998877766554 456778899999984
No 303
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.10 E-value=16 Score=32.39 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=22.2
Q ss_pred CCCHHH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH
Q 013323 73 QPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV 113 (445)
Q Consensus 73 ~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 113 (445)
.||..+ |+..|....+.||+++|++++++.++.|+.--..+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 344444 45556666666666666666666666555433333
No 304
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=65.07 E-value=79 Score=26.16 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=49.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHhHhhcCChhhH---HHHHHHHHHHHhCCCCCCcc----hh
Q 013323 298 NIRCYLHSGDIDNGHKVFEDYICS--EKFPPAELYATLVEGAMFGYTPKGM---QLAQDTLVNMNSRNIFLSPR----MG 368 (445)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~g~---~~a~~~~~~m~~~~~~p~~~----~~ 368 (445)
..-...+.|++++|.+-++++.+. .++--...|..+..+ +++.++. .+|.-++......+ .|++. .+
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~a---g~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL~V~~ 110 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFA---GFVTTALQEYVEATLLYSILKDGR-LPSPEELGVPP 110 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HhhcchHHHHHHHHHHHHHHhcCC-CCCHHHcCCCH
Confidence 334445667777777766666543 111123344444443 3455553 45555555555443 23332 12
Q ss_pred hHHHHHhh------------cccCCChhhHHHHHHHHH
Q 013323 369 SDLLLVAA------------GEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 369 ~~ll~~~~------------~~~~g~~~~A~~~~~~m~ 394 (445)
...|.+.+ ..+.|+++.|.++++-|.
T Consensus 111 ~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 111 IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22222221 347999999999998886
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.44 E-value=12 Score=19.10 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=12.0
Q ss_pred HHHHHHHhcCChhhHHHHHH
Q 013323 297 QNIRCYLHSGDIDNGHKVFE 316 (445)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~ 316 (445)
.+-.++...|++++|.++++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555666666666666554
No 306
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.42 E-value=1e+02 Score=27.31 Aligned_cols=132 Identities=7% Similarity=0.021 Sum_probs=77.9
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCCHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKK-DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS----EKFPPAE 328 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~ 328 (445)
.-|...+|.++.. +..++++.-+-.++..+ +|-.-....+-.+-.-||..++.+.+.++.++..+. |.+.|+.
T Consensus 78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 4455556655532 11123333222333332 244445567788889999999999999888776543 7776665
Q ss_pred HHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcc----hhhHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPR----MGSDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
..-+=+. + -|..... ++.++..+.|.++|-..+.. +|.-+-.+ ...++.+|-.+|-...
T Consensus 156 l~kiRlg-~--~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m----~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 156 LCKIRLG-L--IYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKM----MRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH-H--hhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHH----HHHhhHHHHHHHHHHh
Confidence 5544443 1 2555555 88889999999998655442 34333321 3456777766665544
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.26 E-value=56 Score=28.97 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=33.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 172 (445)
+++..-+.|..+|.+.+|.++-+.....+ +.+...|-.++..+...|+--.+.+-++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445556666666666666666555432 234555666666666666655555555554
No 308
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.58 E-value=66 Score=25.30 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=43.9
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
++.+.+++.|++++.. =..++..+...++.-.|.++++++.+.+...+..|.--.++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4555667777776653 356677777777778888888888887766666665556666665553
No 309
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=62.07 E-value=90 Score=25.79 Aligned_cols=130 Identities=13% Similarity=0.079 Sum_probs=92.6
Q ss_pred CCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHH
Q 013323 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG---FLPDVAV 113 (445)
Q Consensus 37 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~ 113 (445)
..|++..--.|-.++.+.|+..+|...|.+-..--+--|....-.+-.+....++...|..+++++-+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3688888888889999999999999999988654455577777778888888899999999999988754 2344 3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHH
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 170 (445)
--.+-..+.-.|.++.|+.-|+..... -|+...-.---..+.+.|+.+++..-+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 345667788889999999999988874 3444332222333455565555444333
No 310
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=61.97 E-value=1.8e+02 Score=29.16 Aligned_cols=115 Identities=8% Similarity=-0.002 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
....|..|+..+. .=+.+.-.++++++.. . + ...+..++++....|-.....-+.+.+....+ ++...-..+..
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 4445666666553 3455666666666654 1 1 56777777887777776655555555555444 33333333333
Q ss_pred HHHHcC-ChhhHHHHHHHHHH-cCCCCC-------HHHHHHHHHHHHccC
Q 013323 155 ACAAAG-QLDPVYAIVRDMTA-AGAGLD-------KFCYAGLITAHTNKI 195 (445)
Q Consensus 155 ~~~~~g-~~~~a~~~~~~m~~-~g~~p~-------~~~~~~li~~~~~~~ 195 (445)
...-.. --.+.++.+.+|.+ ....+. ..+|.+++.-+|...
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 333322 22334444444444 334433 355666776555443
No 311
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=61.92 E-value=1.1e+02 Score=26.66 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKY--EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
..-|+.-+. -.+.|++++|.+.|+.+... +-+-...+--.++.++-+.++++.|....++....
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334444443 33567777777777777654 11223445555666667777777777777776654
No 312
>PRK11906 transcriptional regulator; Provisional
Probab=61.83 E-value=1.5e+02 Score=28.34 Aligned_cols=160 Identities=8% Similarity=0.050 Sum_probs=103.7
Q ss_pred hhH--HHHHHHHHhcC-----cHhHHHHHHHHHHH-CCCCCCHHH-HHHHHHH-----H---h-cCCChhHHHHHHHHHH
Q 013323 42 SEY--NTVVTSLTSQR-----RFFLLRDVYDDMML-DGVQPTRDL-FHSLIVG-----T---M-KGSRLQDTFFFRDQMK 103 (445)
Q Consensus 42 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~g~~p~~~~-~~~ll~~-----~---~-~~~~~~~a~~~~~~m~ 103 (445)
..| ...+.+..... ..+.|+.+|.+-.. ..+.|+-.. |..+-.. + . ...+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66676666532 34678888988873 345666442 3222221 1 1 2345566777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHH-cCCCCCH
Q 013323 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTA-AGAGLDK 181 (445)
Q Consensus 104 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~ 181 (445)
+.+ .-|......+-.+..-.++.+.|..+|++-... .|| ..+|...-..+.-+|+.++|.+.+++..+ +..+.-.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 765 346777777777677788899999999998874 455 34555555556678999999999999555 3344455
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHH
Q 013323 182 FCYAGLITAHTNKIPRADDTATKIIE 207 (445)
Q Consensus 182 ~~~~~li~~~~~~~~~~~~~a~~~~~ 207 (445)
......++.|+..+- +.+.+++-
T Consensus 409 ~~~~~~~~~~~~~~~---~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNPL---KNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCch---hhhHHHHh
Confidence 666677778877643 55666554
No 313
>PRK09687 putative lyase; Provisional
Probab=61.43 E-value=1.2e+02 Score=27.02 Aligned_cols=17 Identities=0% Similarity=-0.166 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHccCC
Q 013323 110 DVAVYNYLISVCGKCKN 126 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~ 126 (445)
|...=...+.++++.|+
T Consensus 67 d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 67 NPIERDIGADILSQLGM 83 (280)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333334444444443
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.08 E-value=84 Score=25.14 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=49.2
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDL---FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
..-.+.++.+++..+++-|+-. .|.... +... .+.+.|+|.+|..+|+++...+ |.......|+..|....
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 3445567777888887777653 344333 3333 3556788888888888877654 44444555665555443
Q ss_pred CHHHHHHHHHHHHhCC
Q 013323 126 NSDQAIRIFEEMKKYE 141 (445)
Q Consensus 126 ~~~~a~~~~~~m~~~g 141 (445)
.-..-..+-++..+.+
T Consensus 92 ~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 92 GDPSWRRYADEVLESG 107 (160)
T ss_pred CChHHHHHHHHHHhcC
Confidence 3233333334444443
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=61.06 E-value=24 Score=18.87 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.|..+-..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777776655
No 316
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.50 E-value=47 Score=27.53 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=35.5
Q ss_pred HccCCHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 122 GKCKNSDQAIRIFEEMKK-YEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~-~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
...++.+......+...+ ....|+..+|..++..+...|+.++|.+..+++..-
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555444444444333 134688888888888888888888888887777764
No 317
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.06 E-value=12 Score=28.56 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=19.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 89 GSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
.|.-..|..+|..|.++|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 4556667777777777776665 45666654
No 318
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.76 E-value=97 Score=25.44 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCCccH--H-----HHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 013323 127 SDQAIRIFEEMKKYEVKPNG--Q-----TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~--~-----~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 194 (445)
++.|+.+|+.+.+.--.|.. . .-...+-.|.+.|.+++|.++++..... |+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 57788888877764323311 1 1223456788999999999999998874 4554444444444443
No 319
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.25 E-value=25 Score=31.23 Aligned_cols=37 Identities=8% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCccHHH-HHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 142 VKPNGQT-YVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 142 ~~p~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
+.||..+ |+..|...++.||+++|+.++++.++.|+.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455444 456777777777777777777777777654
No 320
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.05 E-value=61 Score=28.94 Aligned_cols=70 Identities=11% Similarity=0.283 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH----------cCChhhH
Q 013323 96 FFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA----------AGQLDPV 165 (445)
Q Consensus 96 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~----------~g~~~~a 165 (445)
.++|+.|...++.|.-+.|.=+.-.+.+.=.+.+.+.+|+.+.. |..-|..++..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 35666666667777666665555555565566677777776664 33335555555543 3555555
Q ss_pred HHHHH
Q 013323 166 YAIVR 170 (445)
Q Consensus 166 ~~~~~ 170 (445)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55443
No 321
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.69 E-value=72 Score=23.57 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
-|..++.-|-..|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388888888888888899888888877
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.47 E-value=89 Score=27.81 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 147 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
.+++.+-..|..+|.+.+|.++.+....-. +.+...+-.++..+...|+. -.+.+-++.+.+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~--is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDE--ISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccc--hhhhhHHHHHHH
Confidence 456778889999999999999998887753 45777888889999988864 445555555443
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.33 E-value=69 Score=23.28 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=41.3
Q ss_pred cHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 013323 56 RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135 (445)
Q Consensus 56 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 135 (445)
..++|.-+-+.+...+-. ....--+-++.+...|++++|..+.+.+. .||...|-+|-. .+.|..++...-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345555555555443311 11111122334556677777766666552 466666665543 35566666666666
Q ss_pred HHHhCC
Q 013323 136 EMKKYE 141 (445)
Q Consensus 136 ~m~~~g 141 (445)
+|..+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666655
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.27 E-value=1.9e+02 Score=28.19 Aligned_cols=49 Identities=4% Similarity=0.078 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 273 VQAMETLLEMLKK-DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 273 ~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.+...++...+.. .|..--...+.-+-.-|....++++|.+++..+.+.
T Consensus 185 ~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 185 KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 3444444444432 233334444444555556666666666666655554
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.18 E-value=1.5e+02 Score=29.34 Aligned_cols=108 Identities=15% Similarity=0.036 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
..-+.+.+.+-+.|-.++|+++- ||..- -.....+.|+++.|.++-.+. -+..-|..|-++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHH
Confidence 35567777777788777777652 22211 122344567777777665543 3556678888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
.+.+++..|.+-|..-.. |..|+-.+...|+-+....+=....+.|
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 888888888877766543 5666666666777666555555555555
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.49 E-value=29 Score=18.64 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666666666666666665544
No 327
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.92 E-value=43 Score=23.02 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=33.0
Q ss_pred hcccHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHhcCChhhHHHHH
Q 013323 269 ELKDVQAMETLLEMLKKDRKSP-DVY-IVMQNIRCYLHSGDIDNGHKVF 315 (445)
Q Consensus 269 ~~g~~~~a~~~~~~m~~~~~~p-~~~-~~~~li~~~~~~g~~~~a~~~~ 315 (445)
..+..+.|...|....+.-..| +.+ ++..++.+|+.-|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888776653333 333 6788888888888888876653
No 328
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.69 E-value=13 Score=28.49 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
.|.-..|-.+|+.|.++|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456678899999999988875 77777654
No 329
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.99 E-value=56 Score=25.68 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 351 DTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 351 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
++...+.+.|+++++.= ..++.... ..++.-.|..+++++.+.+...+..|.-.-++.|.+.|..
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~--~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLL--EADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHH--hcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 45566778888766543 23344444 6666688999999999888888788877777778887765
No 330
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=1.8e+02 Score=27.37 Aligned_cols=104 Identities=11% Similarity=-0.000 Sum_probs=57.2
Q ss_pred HhcCChhhHHHHHHHHHhC---CCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcch-hhHHHHHhhc
Q 013323 303 LHSGDIDNGHKVFEDYICS---EKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRM-GSDLLLVAAG 377 (445)
Q Consensus 303 ~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~ 377 (445)
.+.|++..|.+.|.+.+.. .++|+...|...-. ...+.|+ ++|+.--++...- |+.- ...+..+-++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~----v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~ 331 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL----VNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH 331 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh----hhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence 4678888888888876654 34555555544433 4566676 7776665555432 3322 2223333333
Q ss_pred ccCCChhhHHHHHHHHHHCCCC-CCHHHHHHHHhhhhc
Q 013323 378 EKSGGYTTANYIWDLMQARKIT-PSLPAVEAYYNGLKD 414 (445)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~ 414 (445)
.--++|++|.+-|++-.+..-. -...|+.....++.+
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 4567788887777766643322 233344444444443
No 331
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=55.88 E-value=66 Score=23.72 Aligned_cols=61 Identities=5% Similarity=0.022 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC--CChhHHHHHHHHHHHCCC
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG--SRLQDTFFFRDQMKANGF 107 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~ 107 (445)
..+|..|...++.++|...+.++.... -.......++..+... ...+..-.++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 355667777788888888877763221 1112233333333332 223344455666665554
No 332
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.02 E-value=1.6e+02 Score=26.36 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=35.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
....|+..+|..+|+......- -+...--.+..+|...|+.+.|..++..+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 4556777777777777665421 12445566777777777777777777776543
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=54.67 E-value=22 Score=18.85 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=15.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHc
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+-.++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445556667777777777776654
No 334
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.25 E-value=2.4e+02 Score=28.18 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHccCCHHHHHHHHHHHHh-------CCCCccHHHHHHHHHHHHHcC--
Q 013323 92 LQDTFFFRDQMKANGFLP-DVAVYNYLISV-CGKCKNSDQAIRIFEEMKK-------YEVKPNGQTYVCLLNACAAAG-- 160 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~y~~li~~~~~~g-- 160 (445)
...+.++++...+.|..- -...-.....+ +....|++.|..+|+...+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567888888888776311 11111222233 4566788999999988866 44 3335556666666643
Q ss_pred ---ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 161 ---QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 161 ---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
+.+.|..++...-+.|. |+...+-..+.-... ...+...|.+.|..-.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKA 357 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHc
Confidence 45668888888877764 444444443333322 112335566666655544
No 335
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=53.80 E-value=35 Score=32.26 Aligned_cols=143 Identities=16% Similarity=0.109 Sum_probs=88.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC------CC---CCCHHHHHHHHHhHhhcC
Q 013323 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS------EK---FPPAELYATLVEGAMFGY 341 (445)
Q Consensus 271 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~---~p~~~~~~~li~~~~~~~ 341 (445)
+.+++-.++++.+.+.| .+|..+.+ ++.|++.++++.|.+..++-.+. |. ......+..|+.+.-.-.
T Consensus 25 ~~~~e~~~~l~~l~~~g-~~dvl~lt--iDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~Pl 101 (428)
T cd00245 25 PLLEEHIELLRTLQEEG-AADVLPLT--IDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPV 101 (428)
T ss_pred CCHHHHHHHHHHHHhcC-CCCeeccc--cccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCE
Confidence 45677788888888776 34554444 88899999999999988886422 32 245557777777541112
Q ss_pred -ChhhHHHHHHHHHHHHhCCCCCC---cchhhHHHHHhhcccCCChhhHHHHH---HHHH----HCCCCC----------
Q 013323 342 -TPKGMQLAQDTLVNMNSRNIFLS---PRMGSDLLLVAAGEKSGGYTTANYIW---DLMQ----ARKITP---------- 400 (445)
Q Consensus 342 -~~~g~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~g~~~~A~~~~---~~m~----~~~~~p---------- 400 (445)
.++|-..+..+++.+...|+.-. +.+|+. -|. |.-.+++++.-| +++. +.|+.+
T Consensus 102 qvRhGt~d~~~l~e~~~a~g~~a~egg~isy~~---py~--k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~ 176 (428)
T cd00245 102 QVRHGTPDARLLAEIAIASGFDATEGGPISYNL---PYS--KNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTG 176 (428)
T ss_pred eeccCCccHHHHHHHHHHhCcccccccceeecc---ccC--CCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCccc
Confidence 55666778888888888876432 345442 233 555666666666 4443 445543
Q ss_pred -----CHHHHHHHHhhhhccCCCCCC
Q 013323 401 -----SLPAVEAYYNGLKDREVPADD 421 (445)
Q Consensus 401 -----~~~~~~~l~~~~~~~~~~~~a 421 (445)
+...--++++++...|..-+.
T Consensus 177 ~l~pptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 177 TLVPPSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred CcCCcHHHHHHHHHHHHHHccCCCCE
Confidence 334444556666665554333
No 336
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=53.32 E-value=1.1e+02 Score=29.14 Aligned_cols=128 Identities=11% Similarity=-0.007 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC------CC---CCCHHHHHHHHHhHh-hc
Q 013323 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS------EK---FPPAELYATLVEGAM-FG 340 (445)
Q Consensus 271 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~---~p~~~~~~~li~~~~-~~ 340 (445)
+.+++-.++++.+.+.| .+|.- ..-|++|.+.+++++|.+.+++=++. |. .-...+...++...- .-
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad~l--p~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GADFL--PSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCCcc--ceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 45678888888888775 34433 33489999999999999999877653 22 234556666666421 01
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCC---cchhhHHHHHhhcccCCChhhHHHHHH---HHH----HCCCCCCHHHHH
Q 013323 341 YTPKGMQLAQDTLVNMNSRNIFLS---PRMGSDLLLVAAGEKSGGYTTANYIWD---LMQ----ARKITPSLPAVE 406 (445)
Q Consensus 341 ~~~~g~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~g~~~~A~~~~~---~m~----~~~~~p~~~~~~ 406 (445)
-.++|-..+..+++.+...|+.-. +.+|+ .-|+ |.=-++++..-|+ ++. +.|+..+.++|.
T Consensus 145 QvRHGtpDarlL~e~~~a~G~~a~EGG~ISYn---lPYs--K~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FG 215 (480)
T TIGR01503 145 QIRHGTPDARLLAEIILAGGFTSFEGGGISYN---IPYA--KNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFG 215 (480)
T ss_pred eccCCCCcHHHHHHHHHHcCCCccCCCcceec---cccC--CCCCHHHHHHHHHHHHHHHHHHHhcCceecccccc
Confidence 245566778888888888886532 34444 2343 6656666655554 332 456655554443
No 337
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.94 E-value=2.6e+02 Score=28.24 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=79.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhh------HHHHHHHHHhCCCCCCHHHHHHH
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKD--RKSPDVYIVMQNIRCYLHSGDIDN------GHKVFEDYICSEKFPPAELYATL 333 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~~~~p~~~~~~~l 333 (445)
+++.+|...|++-.+.++++.+... |-+.=...||..|+.+.+.|.++- |.+.++ ...+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq---~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQ---QARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHH---HhhcCCcchHHHHH
Confidence 7999999999999999999988764 444445678888999999998642 333333 22455688999999
Q ss_pred HHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHH--HCCCCCCHH
Q 013323 334 VEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ--ARKITPSLP 403 (445)
Q Consensus 334 i~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~--~~~~~p~~~ 403 (445)
+.+ ++--.......-++.+...+.. +-++..+++...=.+++..-+++++. -....|+..
T Consensus 110 ~~~---sln~t~~~l~~pvl~~~i~~s~-------ngv~di~~~~~v~s~~ev~limd~l~i~~~n~~ps~l 171 (1117)
T COG5108 110 CQA---SLNPTQRQLGLPVLHELIHRSA-------NGVIDILMHESVFSPEEVKLIMDQLNIPINNFTPSQL 171 (1117)
T ss_pred HHh---hcChHhHHhccHHHHHHHHhhh-------hhHHHHHhhhccCCHHHHHHHHHhcCCCCCCCCcchh
Confidence 985 2222222444455555554321 22334443224455566666655554 234455544
No 338
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.62 E-value=1.6e+02 Score=25.54 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
..|...-.+|-...++++|...+.+-.+ +.+-|...|++. ...+.|--+.++|.+. .--...|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAA-------KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAA-------KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHH-------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 3455555677778888888776665532 233344434321 2345555555555542 12234566666777
Q ss_pred HccCCHHHHHHHHHHH
Q 013323 122 GKCKNSDQAIRIFEEM 137 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m 137 (445)
..+|.++-|-..+++-
T Consensus 102 ~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKA 117 (308)
T ss_pred HHhCCcchHHHHHHHH
Confidence 7777776666555544
No 339
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.32 E-value=1.2e+02 Score=24.85 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCC
Q 013323 92 LQDTFFFRDQMKANGFLPD--VAVY-----NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p~--~~~~-----~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 161 (445)
++.|..+|+.+.+.--.|. ...- -..+-.|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 6789999998886532231 1122 2345579999999999999999987 4666666665655555444
No 340
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.27 E-value=1.8e+02 Score=25.85 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=37.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKD--RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
.=|.+++..|++.++....-.--+. .++|.+. ..-|-.|.+.|....+.++-..-....-.-+...|.++.+
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaE 161 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAE 161 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHH
Confidence 3466777777777766444333322 3333333 3334447777777777776666555411112233555544
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.66 E-value=1.4e+02 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=14.4
Q ss_pred CccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 143 KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 143 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
.|+..+|+.-+.... +|-++..++.+.+
T Consensus 110 ~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 110 DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp -TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 566666666666542 3445555555543
No 342
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.56 E-value=1.7e+02 Score=25.32 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=68.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CC-----------CCCHHHH
Q 013323 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EK-----------FPPAELY 330 (445)
Q Consensus 263 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~-----------~p~~~~~ 330 (445)
.|--|.+..+..-..++.+-.+..++.-+..-..++| +...|++..|+.-+..-... |. .|.+...
T Consensus 165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v 242 (333)
T KOG0991|consen 165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLV 242 (333)
T ss_pred HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHH
Confidence 4445666666666666666666666666655566555 56678888887776654432 21 4777777
Q ss_pred HHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHh
Q 013323 331 ATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVA 375 (445)
Q Consensus 331 ~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 375 (445)
..++. .+.....++|.+++.++-+.|+.|.. ..+.+.+++
T Consensus 243 ~~ml~----~~~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 243 KKMLQ----ACLKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHHH----HHHhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 77777 34444458899999998888887653 334555544
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.31 E-value=1.8e+02 Score=25.62 Aligned_cols=90 Identities=10% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhCCCCccH---HHHHHHHHHHHHcCChhhHHHHHHHHHH---cCC-
Q 013323 106 GFLPDVAVYNYLISVC-GKCKNSDQAIRIFEEMKKYEVKPNG---QTYVCLLNACAAAGQLDPVYAIVRDMTA---AGA- 177 (445)
Q Consensus 106 g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~g~~p~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g~- 177 (445)
+-+||+..=|---+.- .+..++++|+.-|++..+..-..-. ...-.+|....+.+++++..+.|.+|.. ..+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3445554433322211 2334567777777766653111111 2234466777777777777777777643 111
Q ss_pred -CCCHHHHHHHHHHHHccC
Q 013323 178 -GLDKFCYAGLITAHTNKI 195 (445)
Q Consensus 178 -~p~~~~~~~li~~~~~~~ 195 (445)
.-+..+.|++++..+...
T Consensus 101 rNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccccHHHHHHHHHHHhhhh
Confidence 234556666666655443
No 344
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.95 E-value=2e+02 Score=26.02 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHH
Q 013323 92 LQDTFFFRDQMKANGF----LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYA 167 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~ 167 (445)
.+.|.+.|+.....+. ..+...-..++....+.|+.+....+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5566677777666421 34555666677777777776666666665554 2456667777777777777777777
Q ss_pred HHHHHHHcC
Q 013323 168 IVRDMTAAG 176 (445)
Q Consensus 168 ~~~~m~~~g 176 (445)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 777777754
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.16 E-value=1.9e+02 Score=25.65 Aligned_cols=137 Identities=11% Similarity=0.061 Sum_probs=84.9
Q ss_pred ecchHHHHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 013323 24 VTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 24 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
+..+.+.-|..++|.....++..-+..+.....-++--.-..+. -......=|.+++..++|.+++...-+--
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~ev-------K~sLcvvGIQALAEmnrWreVLsWvlqyY 110 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEV-------KCSLCVVGIQALAEMNRWREVLSWVLQYY 110 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhh-------hhhhhhhhHHHHHHHhhHHHHHHHHHHHh
Confidence 34445566777888888888887777775533222111111111 12223445788999999999887654443
Q ss_pred HC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH-----cCChhhHHHHH
Q 013323 104 AN--GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA-----AGQLDPVYAIV 169 (445)
Q Consensus 104 ~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~-----~g~~~~a~~~~ 169 (445)
+. .++| .+...-|-.|.+.+++..+.++-..=....-.-+...|.++...|.. .|.+++|+++.
T Consensus 111 q~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 111 QVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 32 3444 34444555688999998888887766553222233448887777665 69999999887
No 346
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.76 E-value=92 Score=21.85 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 97 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
++|+-....|+..|..+|.++++..--.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555555555554444444444444444443
No 347
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.67 E-value=44 Score=21.99 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 109 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
|+...++-+++.+++..-+++++..+.+..++|. .+..+|---++.++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555553 244444444444443
No 348
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.63 E-value=2.2e+02 Score=26.09 Aligned_cols=115 Identities=6% Similarity=-0.026 Sum_probs=75.3
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHcCChhh
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY---EVKPNGQTYVCLLNACAAAGQLDP 164 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~y~~li~~~~~~g~~~~ 164 (445)
-.|+..+|-..++++.+. .+.|...++-.-++|.-.|+.+.....+++.... +++-.+..-.+.-.++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457777777778887764 4567888888888999999998888888888643 333334444455566677888999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHH
Q 013323 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 206 (445)
Q Consensus 165 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~ 206 (445)
|++.-++..+-+ +.|...-.+.-+.+-..|+. .++.++.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~--Keg~eFM 232 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRH--KEGKEFM 232 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchh--hhHHHHH
Confidence 988877766543 22444444444444444443 4444443
No 349
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.46 E-value=1.5e+02 Score=24.23 Aligned_cols=142 Identities=10% Similarity=0.017 Sum_probs=93.6
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH-HHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA-VYN 115 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 115 (445)
..+-..|-..+. +++.++.++|+.-|..+.+.|..--... --..-...++.|+...|...|++.-...-.|-.. -..
T Consensus 56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 345566655555 3678889999999999988765321111 1122234668899999999999998764334332 111
Q ss_pred HHHHH--HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 116 YLISV--CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 116 ~ll~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
-|=.+ +...|.++....-.+-+...+-+-....-..|--+-.+.|++.+|.+.|+.+......|-
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 12222 345778888877777776555444445556777778889999999999999887654443
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.41 E-value=71 Score=22.02 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHHcCChhhHHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPN--GQTYVCLLNACAAAGQLDPVYA 167 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~a~~ 167 (445)
...+.++|+..|....+.-..|. -.+...++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544322211 2344555555555555555443
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.71 E-value=2.8e+02 Score=27.09 Aligned_cols=146 Identities=10% Similarity=-0.003 Sum_probs=89.9
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-----CCHHHH
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF-----PPAELY 330 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~ 330 (445)
+...|-.++..|... .-+....+|+.+.+..+ |.....--+..+...++.+.+...|.....+-+. --...|
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evW 174 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVW 174 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHH
Confidence 344677788888887 55777778887776543 3333333344444448888888888887765221 122366
Q ss_pred HHHHHhHhhcCChhhHHHHHHHHHHHHh-CCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 331 ATLVEGAMFGYTPKGMQLAQDTLVNMNS-RNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYY 409 (445)
Q Consensus 331 ~~li~~~~~~~~~~g~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 409 (445)
.-|+. |.....+..+.+..+... .|...-.+.+..+-.-|. -..++++|.+++..+.+.+- -|...-..++
T Consensus 175 eKL~~-----~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys--~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i 246 (711)
T COG1747 175 EKLPE-----LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS--ENENWTEAIRILKHILEHDE-KDVWARKEII 246 (711)
T ss_pred HHHHH-----hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc--cccCHHHHHHHHHHHhhhcc-hhhhHHHHHH
Confidence 66664 554444777777766653 344445556666666666 88999999999988875432 2333334444
Q ss_pred hhh
Q 013323 410 NGL 412 (445)
Q Consensus 410 ~~~ 412 (445)
+-+
T Consensus 247 ~~l 249 (711)
T COG1747 247 ENL 249 (711)
T ss_pred HHH
Confidence 443
No 352
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.19 E-value=1.6e+02 Score=23.86 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=31.4
Q ss_pred HHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 013323 137 MKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195 (445)
Q Consensus 137 m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 195 (445)
++..|++++..= ..++..+...++.-.|.++++.+.+.+..++..|.--.|+.+...|
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344565544433 2444444444555666777777766665555555555555555554
No 353
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.81 E-value=1.4e+02 Score=24.27 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=33.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChh
Q 013323 102 MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163 (445)
Q Consensus 102 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~ 163 (445)
+.+.|+.++..-. .++..+...++.-.|.++++.+.+.+..++..|.--.|..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4455665554432 344444444555667777777776665556555555555555555443
No 354
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=45.74 E-value=87 Score=21.57 Aligned_cols=12 Identities=33% Similarity=0.493 Sum_probs=4.5
Q ss_pred HHHHHHHcCCCC
Q 013323 168 IVRDMTAAGAGL 179 (445)
Q Consensus 168 ~~~~m~~~g~~p 179 (445)
+++.+.+.|..+
T Consensus 74 ~~~~Ll~~g~~~ 85 (89)
T PF12796_consen 74 IVKLLLEHGADV 85 (89)
T ss_dssp HHHHHHHTTT-T
T ss_pred HHHHHHHcCCCC
Confidence 334444444333
No 355
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.62 E-value=33 Score=22.25 Aligned_cols=46 Identities=2% Similarity=0.170 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
++...++++.+... .-|-.-.-.+|.++...|++++|.+..+++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555555431 12333444578888888888888888877765
No 356
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.46 E-value=1.1e+02 Score=21.58 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
++|+.-...|+..|...|.+++.-..-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443
No 357
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.32 E-value=1.4e+02 Score=27.17 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=37.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhC---CCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHH
Q 013323 263 AFHACAELKDVQAMETLLEMLKKD---RKSPDVYIV--MQNIRCYLHSGDIDNGHKVFEDYIC-----SEKFPPAEL 329 (445)
Q Consensus 263 li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 329 (445)
++...-+.++.++|.++++++.+. --.|+...| ..+...+...|+..++.+.+++..+ .++.|++.+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344444455666777777666543 224455443 3334455556777777777777766 355554443
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.06 E-value=35 Score=22.15 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 92 LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
++...++.+.++... -|-.--=.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~R--HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQR--HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555554311 1222223467788888888888888877764
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.00 E-value=3.9e+02 Score=28.03 Aligned_cols=240 Identities=12% Similarity=0.036 Sum_probs=126.2
Q ss_pred HHHHHhcCcHhHHHHHHHHHHH---C------------CCCCCHHHH--H--HHHH--HHhcCCChhHHHHHHHHHHHCC
Q 013323 48 VTSLTSQRRFFLLRDVYDDMML---D------------GVQPTRDLF--H--SLIV--GTMKGSRLQDTFFFRDQMKANG 106 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~---~------------g~~p~~~~~--~--~ll~--~~~~~~~~~~a~~~~~~m~~~g 106 (445)
|+.....|+++.|-+++++... . ++ |+.... . .++. ......++.+|..+.++....-
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 4455667788777777766511 1 12 222211 1 1122 2345788999999988876532
Q ss_pred CCCCH-------HHHHHHHHHH-HccCCHHHHHHHHHHHHhC----CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 107 FLPDV-------AVYNYLISVC-GKCKNSDQAIRIFEEMKKY----EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 107 ~~p~~-------~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~----g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
-.|+. ..|+.|=... ...|++++|.++-+.-... -..+....+..+..+..-.|++++|..+..+-.+
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 12221 2455443332 3467889988887765542 2345567788888888889999999998887766
Q ss_pred cCCCCCHHHHHHHHHH-----HHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhh
Q 013323 175 AGAGLDKFCYAGLITA-----HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR 249 (445)
Q Consensus 175 ~g~~p~~~~~~~li~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (445)
..-.-++..+..+... +-..|........+.|........ .+
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l---------------------------------~q 572 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL---------------------------------EQ 572 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---------------------------------hh
Confidence 4333444444433322 222332222333333333332210 00
Q ss_pred cCcccCchhHHHHHHHHHHhccc-HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 250 GGFLSRLLTVYHVAFHACAELKD-VQAMETLLEMLKKDRKSPDVY--IVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 250 ~g~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.+...+-.-++..+..++.+... ..++..-++.-......|-.. .+..|...+...|+.++|....+++...
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 00111223345555555555221 112222222211222222222 2236778888899999999999998765
No 360
>PRK14135 recX recombination regulator RecX; Provisional
Probab=44.98 E-value=2.2e+02 Score=25.05 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCC
Q 013323 260 YHVAFHACAELKDVQAMETLLEMLKKDRK 288 (445)
Q Consensus 260 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 288 (445)
++..+..+....... .++...+.+.|+
T Consensus 60 ~~~Al~~L~~r~~s~--~el~~kL~~kg~ 86 (263)
T PRK14135 60 KNLALYYLSYQMRTE--KEVRDYLKKHEI 86 (263)
T ss_pred HHHHHHHhhhccccH--HHHHHHHHHCCC
Confidence 444444444333322 344445555454
No 361
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=44.94 E-value=2.5e+02 Score=26.47 Aligned_cols=130 Identities=13% Similarity=-0.023 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHH----HhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCCHH
Q 013323 259 VYHVAFHACAELKDVQAMETLLEML----KKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS----E-KFPPAE 328 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~ 328 (445)
.|..+-..|--.|+++.|...++.= ++-|-+. -...+..|-+++.-.|+++.|.+.|+.-... | ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555668899888776632 2223222 3456788889999999999999988764432 2 122344
Q ss_pred HHHHHHHhHhhcCChhhH-HHHHHHHHHHH----hCC-CCCCcchhhHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGM-QLAQDTLVNMN----SRN-IFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~-~~a~~~~~~m~----~~~-~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
++-+|-. .|.-... ++|+..+.+-. +.+ ..-....+.+|-.++. .-|.-++|+.+.+.-.
T Consensus 277 scYSLgN----tytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~--alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGN----TYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN--ALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hhhhHHHHHHHHHHHH
Confidence 4444444 2333333 55555443321 111 1113345666767776 7888888887776655
No 362
>PRK09687 putative lyase; Provisional
Probab=44.35 E-value=2.3e+02 Score=25.23 Aligned_cols=240 Identities=10% Similarity=0.004 Sum_probs=138.2
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHCC
Q 013323 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL----QDTFFFRDQMKANG 106 (445)
Q Consensus 31 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~g 106 (445)
+.......+|.......+.++...|.. .+...+..+.+. +|...=...+.++.+.|+. .++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 334444577888888888888888764 344444444443 4556555666677777763 4677777766433
Q ss_pred CCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH
Q 013323 107 FLPDVAVYNYLISVCGKCKNS-----DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (445)
.|+..+-...+.+++..+.. ..+...+..... .++..+--..+.++++.++ +++...+-.+.+. +|.
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~ 173 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNG 173 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCH
Confidence 37777777777777766432 223333333332 3466666677778877776 4566666666653 566
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHH
Q 013323 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261 (445)
Q Consensus 182 ~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 261 (445)
.+-...+.++++.+...++....+...+. .++..+-.
T Consensus 174 ~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-------------------------------------------D~~~~VR~ 210 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNPDIREAFVAMLQ-------------------------------------------DKNEEIRI 210 (280)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhc-------------------------------------------CCChHHHH
Confidence 67777777777653222222222333221 33445566
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
..+.++.+.++..-...+.+.+. .+ + ..-..+.++...|.. +|...+..+... .||...-...+.
T Consensus 211 ~A~~aLg~~~~~~av~~Li~~L~-~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~ 275 (280)
T PRK09687 211 EAIIGLALRKDKRVLSVLIKELK-KG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAID 275 (280)
T ss_pred HHHHHHHccCChhHHHHHHHHHc-CC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence 67778888877554444444443 22 2 233566777777774 566666666553 235555544444
No 363
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.92 E-value=1.1e+02 Score=23.95 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=36.2
Q ss_pred HHHhCCCCCCcchhhHHHHHhhccc-CCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 355 NMNSRNIFLSPRMGSDLLLVAAGEK-SGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 355 ~m~~~~~~p~~~~~~~ll~~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
.+.+.|+++++.= ..++.... . .+..-.|.++++++.+.+...+..|.-.-++.|.+.|..
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~--~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQ--EPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHH--hCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3556666654432 22222222 3 245667888888888777767777766666666666654
No 364
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.89 E-value=1.3e+02 Score=22.22 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQ 350 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~ 350 (445)
..++|..|.+.+...+- -...+--+-+..+.+.|++++|+.. ......||...|-+|-. .+.|. +++.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~a------~klGL~~~~e 89 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALCA------WKLGLASALE 89 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHHH------HHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHHH------HhhccHHHHH
Confidence 47899999999887654 2233333345667889999999221 22245789999988876 57777 7777
Q ss_pred HHHHHHHhCC
Q 013323 351 DTLVNMNSRN 360 (445)
Q Consensus 351 ~~~~~m~~~~ 360 (445)
..+.++..+|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
Confidence 7777777666
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=43.85 E-value=3.6e+02 Score=27.30 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=104.7
Q ss_pred HHHHHhcCCCCC----hhhHHHHHHHHH-hcCcHhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhcCCChhHHHHH
Q 013323 29 AEEYARRNYANN----ASEYNTVVTSLT-SQRRFFLLRDVYDDMMLDGVQPTRD-----LFHSLIVGTMKGSRLQDTFFF 98 (445)
Q Consensus 29 ~~~~~~~~~~p~----~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~ 98 (445)
..+...+.++++ ..++-.+...+. ...+++.|...+++-....-+++.. .-..++..+.+.+... |...
T Consensus 43 CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~ 121 (608)
T PF10345_consen 43 CLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKN 121 (608)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHH
Confidence 344444444433 333444455555 5688999999998765433223322 1234455566666555 8888
Q ss_pred HHHHHHC----CCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhCC---CCccHHHHHHHHHHHHH--cCChhhHHHH
Q 013323 99 RDQMKAN----GFLPDVAVYNYL-ISVCGKCKNSDQAIRIFEEMKKYE---VKPNGQTYVCLLNACAA--AGQLDPVYAI 168 (445)
Q Consensus 99 ~~~m~~~----g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~y~~li~~~~~--~g~~~~a~~~ 168 (445)
.+...+. +..+-...|..+ +..+...++...|.+.++.....- ..|-..++-.++.+... .+..+++.+.
T Consensus 122 l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~ 201 (608)
T PF10345_consen 122 LDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLEL 201 (608)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 8876643 222334455555 444444489999999998886532 34555666666666654 4556777777
Q ss_pred HHHHHHcC--C-------CCCHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 169 VRDMTAAG--A-------GLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 169 ~~~m~~~g--~-------~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
.+++.... + .|...++..+++.++.....+.+.+......+.
T Consensus 202 l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 202 LQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77774422 1 356778888888776543333245544444433
No 366
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.08 E-value=1.6e+02 Score=29.50 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGA 337 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 337 (445)
..-.-++..|.+.|..+.+..|.+.+-..-+ ...-|..-+.-+.++|+.+...++-+.+.+.
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~---------------- 467 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE---------------- 467 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 3445577777777777777777776544321 2234555556666666666555555444433
Q ss_pred hhcCChhhHHHHHHHHHHHHhCC-CCCC---cchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 013323 338 MFGYTPKGMQLAQDTLVNMNSRN-IFLS---PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNG 411 (445)
Q Consensus 338 ~~~~~~~g~~~a~~~~~~m~~~~-~~p~---~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 411 (445)
|...|.....++++.+.... +.+. ..+|.-.-. ..+.|++.+|.+.+-.+.+.++.|...-..-|.++
T Consensus 468 ---~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~---~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 468 ---YCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYE---LYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ---HhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 33333222222222221111 1111 112222222 23678888888888888888888877665555554
No 367
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.76 E-value=1.5e+02 Score=26.99 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=56.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC---CCCccHHHHHH--HHHHHHHcCChhhHHHHHHHHHH-----cCCCCCHHH
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKY---EVKPNGQTYVC--LLNACAAAGQLDPVYAIVRDMTA-----AGAGLDKFC 183 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~y~~--li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 183 (445)
...++...-+.++.++|+++++++.+. --.|+.+.|-. +..++...|+..++.+++++.++ .|++|++++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 345555666777999999999998753 33567776654 55666778999999999999887 678886554
Q ss_pred -HHHHHHHHHc
Q 013323 184 -YAGLITAHTN 193 (445)
Q Consensus 184 -~~~li~~~~~ 193 (445)
|..+-.-|.+
T Consensus 158 ~fY~lssqYyk 168 (380)
T KOG2908|consen 158 SFYSLSSQYYK 168 (380)
T ss_pred hHHHHHHHHHH
Confidence 4444444433
No 368
>COG5210 GTPase-activating protein [General function prediction only]
Probab=41.95 E-value=2.6e+02 Score=27.44 Aligned_cols=61 Identities=7% Similarity=0.055 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
..-++++.|.+.|+.+...++..++..+.+...++.+.++|+.+--.|..--...+.+++.
T Consensus 360 ~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~ 420 (496)
T COG5210 360 LDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILK 420 (496)
T ss_pred HHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3446788888899999999999999999999999999999999988876655555555544
No 369
>PRK09857 putative transposase; Provisional
Probab=41.55 E-value=2.3e+02 Score=25.45 Aligned_cols=66 Identities=9% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
+..++.-..+.++.++..++++.+.+. +.+.....-++..-+.+.|.-+++.++-..|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 556666666777777777777777654 222333344555566666666778888888888887655
No 370
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.45 E-value=4.1e+02 Score=27.28 Aligned_cols=322 Identities=11% Similarity=0.046 Sum_probs=161.4
Q ss_pred HhcCCCCChhhHH-----HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC---hhHHHHHHHHHHH
Q 013323 33 ARRNYANNASEYN-----TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR---LQDTFFFRDQMKA 104 (445)
Q Consensus 33 ~~~~~~p~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~ 104 (445)
.+-|+.-+..-|. .+|.-+...+.+..|.++-..+...-..- ...|.....-+.+..+ .+.+..+-+.+..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 3444444444443 45777778888888888877774321111 3455555555554432 2222233333322
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV----KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 105 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
.. .+...|..+-+....+|+.+.|..+++.=...+- -.+..-+...+.-+...|+.+-...++-.|...- +
T Consensus 503 -~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~ 577 (829)
T KOG2280|consen 503 -KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---N 577 (829)
T ss_pred -cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---H
Confidence 22 3455677777777789999999988875433321 1244557788888889999998888887776641 2
Q ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHh--hhcCcccCchh
Q 013323 181 KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH--RRGGFLSRLLT 258 (445)
Q Consensus 181 ~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~ 258 (445)
...+...+.-. -.|..++....+..+-...... ........++..+....... .-.|. .|+.
T Consensus 578 ~s~l~~~l~~~--------p~a~~lY~~~~r~~~~~~l~d~------y~q~dn~~~~a~~~~q~~~~~~~~~~r-~~~l- 641 (829)
T KOG2280|consen 578 RSSLFMTLRNQ--------PLALSLYRQFMRHQDRATLYDF------YNQDDNHQALASFHLQASYAAETIEGR-IPAL- 641 (829)
T ss_pred HHHHHHHHHhc--------hhhhHHHHHHHHhhchhhhhhh------hhcccchhhhhhhhhhhhhhhhhhccc-chhH-
Confidence 22222222110 1233333332221111000000 00000001111110000000 00111 1221
Q ss_pred HHHHHHHHHHhccc----------HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 013323 259 VYHVAFHACAELKD----------VQAMETLLEMLKK-DRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPA 327 (445)
Q Consensus 259 ~~~~li~~~~~~g~----------~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 327 (445)
...-.+|++... .....++.+.+.. .|......|.+--+.-+...|+-.+|.++-.+. ..||-
T Consensus 642 --k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdK 715 (829)
T KOG2280|consen 642 --KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDK 715 (829)
T ss_pred --HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcch
Confidence 122223333222 2222333333332 243444455666677778888888887765543 34677
Q ss_pred HHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHH
Q 013323 328 ELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 328 ~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~ 394 (445)
..|-.=+. +++..++ ++-+++-..+ . .|.-|.-...+|. +.|+.++|.+.+-+..
T Consensus 716 r~~wLk~~----aLa~~~kweeLekfAksk---k---sPIGy~PFVe~c~--~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 716 RLWWLKLT----ALADIKKWEELEKFAKSK---K---SPIGYLPFVEACL--KQGNKDEAKKYIPRVG 771 (829)
T ss_pred hhHHHHHH----HHHhhhhHHHHHHHHhcc---C---CCCCchhHHHHHH--hcccHHHHhhhhhccC
Confidence 77766666 4555555 5444332222 1 3666777778887 8888888888876553
No 371
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.33 E-value=2e+02 Score=24.57 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=56.2
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP---DVYIV--MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 328 (445)
.+...-+|.||--|.-...+.+|-..|.. +.|+.| |..++ ..-|......|++++|.+..+.+-..-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34444566665555555555555555543 345555 33333 345777899999999999988876553444443
Q ss_pred HHHHHHHhHhhcCChhhH-HHHHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGM-QLAQDTLVN 355 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~-~~a~~~~~~ 355 (445)
.+-.|..--..-..+.|. +.|++....
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333211113556666 666666543
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.70 E-value=3.5e+02 Score=26.17 Aligned_cols=120 Identities=8% Similarity=0.045 Sum_probs=63.2
Q ss_pred HHhcCcHhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 013323 51 LTSQRRFFLL-RDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129 (445)
Q Consensus 51 ~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 129 (445)
-...|+.-.| .++++-++...-.|+....-+.| ....|+++.+.+.+....+. +-....+..+++....+.|+++.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 3344554433 45555555544445554444333 23346666666665554432 22344566666776667777777
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 130 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
|..+-+.|....++ |...........-..|-++++...++++..
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 77776666655443 333333333333344556666666666544
No 373
>PRK11906 transcriptional regulator; Provisional
Probab=39.71 E-value=3.5e+02 Score=26.00 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=58.3
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY-IVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYA 331 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~ 331 (445)
+.|......+-.+....++++.+...|+.... +.||.. +|...-....-+|+.++|.+.+++..+. ..+.......
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 44555555555555777778899888887765 456433 3333333456689999999988884443 2222222223
Q ss_pred HHHHhHhhcCChhhHHHHHHHHHH
Q 013323 332 TLVEGAMFGYTPKGMQLAQDTLVN 355 (445)
Q Consensus 332 ~li~~~~~~~~~~g~~~a~~~~~~ 355 (445)
..|+ .|..++.+.+..++-+
T Consensus 413 ~~~~----~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 413 ECVD----MYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHH----HHcCCchhhhHHHHhh
Confidence 3332 5777877777777644
No 374
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.59 E-value=1.1e+02 Score=19.95 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCChhhHHHHH
Q 013323 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL-----HSGDIDNGHKVF 315 (445)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~g~~~~a~~~~ 315 (445)
+.+.|++-+|.++++.+-...-.|....+-.||...+ +.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4456888888888888775433345556666666543 457777776654
No 375
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.59 E-value=3.7e+02 Score=26.21 Aligned_cols=91 Identities=10% Similarity=0.087 Sum_probs=52.5
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH
Q 013323 68 MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147 (445)
Q Consensus 68 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 147 (445)
...|+..+......+.... .|+.-.|+.++++....+ ....++..+...+ |+ ++..
T Consensus 194 ~~Egi~~e~eAL~~Ia~~S--~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l-------------------g~-~~~~ 249 (484)
T PRK14956 194 KIENVQYDQEGLFWIAKKG--DGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI-------------------GY-HGIE 249 (484)
T ss_pred HHcCCCCCHHHHHHHHHHc--CChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh-------------------CC-CCHH
Confidence 3467777777766665443 588888998888865321 1112222221111 32 2555
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHH
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 182 (445)
.+..++.+....+....++.++++|.+.|..|...
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 55566665555455567777777777777665543
No 376
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.39 E-value=49 Score=16.43 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
+|..+-..+...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666667777777777766554
No 377
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.96 E-value=3.4e+02 Score=25.60 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKY--EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
...+.-+-+.|..+|+++.|++.|.+.... ..+-....|-.+|..-...|+|..+.....+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 346777888899999999999999986542 11223455667777778889998888777776654
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.89 E-value=1.4e+02 Score=21.09 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=7.1
Q ss_pred cCCHHHHHHHHHHHH
Q 013323 124 CKNSDQAIRIFEEMK 138 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~ 138 (445)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 379
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.39 E-value=1.6e+02 Score=21.61 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCCh-hhH-HHHHHHHHHHHhCCC
Q 013323 296 MQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTP-KGM-QLAQDTLVNMNSRNI 361 (445)
Q Consensus 296 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~g~-~~a~~~~~~m~~~~~ 361 (445)
..+|..|...|+.++|.+-+.++... .--......++.+. +-+ ... +.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~---le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECA---LEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHH---HTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHhcCC
Confidence 34556666667777777666664222 11122333333322 122 333 666666666666553
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.24 E-value=3.5e+02 Score=25.46 Aligned_cols=57 Identities=5% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--cCCChhHHHHHHHHHHHC
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRD--LFHSLIVGTM--KGSRLQDTFFFRDQMKAN 105 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~m~~~ 105 (445)
...+.+.+++..|.++|+.+.+. ++++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555889999999999999887 655554 3444545443 456788888888887764
No 381
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=38.06 E-value=2.2e+02 Score=23.16 Aligned_cols=224 Identities=9% Similarity=-0.024 Sum_probs=132.6
Q ss_pred cCcHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 013323 54 QRRFFLLRDVYDDMMLDGVQ-PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-GFLPDVAVYNYLISVCGKCKNSDQAI 131 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~ 131 (445)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...++++.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45556666666665554322 13566667777777777888777777777652 22345566666677777777788888
Q ss_pred HHHHHHHhCCCCccHHHHHHHHH-HHHHcCChhhHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCCchHHHHHHHHH
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLN-ACAAAGQLDPVYAIVRDMTAAGA--GLDKFCYAGLITAHTNKIPRADDTATKIIEL 208 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~ 208 (445)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...+.. +.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY--EEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH--HHHHHHHHH
Confidence 8887777643333 122222222 67778888888888888754211 01223333333333444433 666666665
Q ss_pred HHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccC-chhHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Q 013323 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR-LLTVYHVAFHACAELKDVQAMETLLEMLKKDR 287 (445)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 287 (445)
..... +. ....+..+-..+...++.+.+...+.......
T Consensus 193 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 193 ALKLN----------------------------------------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HHhhC----------------------------------------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 55432 12 24456666677777778888888888777664
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 288 KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 288 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.. ....+..+...+...+..+.+...+......
T Consensus 233 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 233 PD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2333333444444667788888888777665
No 382
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=3.2e+02 Score=24.90 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH----cCCCCCH
Q 013323 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA----AGAGLDK 181 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~ 181 (445)
++.|..-+|.+..+ ...++++-.+..+...+. |-.--...+-..-.-||+-|+-+.|++.++.-.+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 45555555555543 122233333333333332 2111234455666778999999998888876644 4677777
Q ss_pred HHHHHHHHHH
Q 013323 182 FCYAGLITAH 191 (445)
Q Consensus 182 ~~~~~li~~~ 191 (445)
..+..=+..+
T Consensus 144 vf~~iRlglf 153 (393)
T KOG0687|consen 144 VFYKIRLGLF 153 (393)
T ss_pred HHHHHHHHHh
Confidence 7666555444
No 383
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.41 E-value=1.2e+02 Score=22.35 Aligned_cols=45 Identities=7% Similarity=-0.034 Sum_probs=30.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
++..+...+..-.|.++++.+.+.+..++..|.--.|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 455555556667788888888877766677666666666666654
No 384
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.96 E-value=99 Score=30.90 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..-+..+...++.. ....+.+..+-.-.+...-..++..|.+.|-.+.+.++.+.+-..-+ ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3334444444444433222 33333333322223455567777778888877777777776654322 2345666777
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (445)
.+.++|+...+..+-+.+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHH----------------
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 7777777766655555544
No 385
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.70 E-value=5.1e+02 Score=26.71 Aligned_cols=75 Identities=15% Similarity=0.078 Sum_probs=48.9
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHHccCCHHHHHHHH
Q 013323 68 MLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG---FL----------PDVAVYNYLISVCGKCKNSDQAIRIF 134 (445)
Q Consensus 68 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~----------p~~~~~~~ll~~~~~~g~~~~a~~~~ 134 (445)
.+.|+..+......++... .|+...+..+++++...| +. .+......|++++.. ++...++.++
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l 268 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKA 268 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3467777777777776655 488888888887765432 11 123334455555554 7788888888
Q ss_pred HHHHhCCCCcc
Q 013323 135 EEMKKYEVKPN 145 (445)
Q Consensus 135 ~~m~~~g~~p~ 145 (445)
+++...|+.+.
T Consensus 269 ~~L~~~G~d~~ 279 (709)
T PRK08691 269 QEMAACAVGFD 279 (709)
T ss_pred HHHHHhCCCHH
Confidence 88888877554
No 386
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=35.43 E-value=3.9e+02 Score=25.30 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=80.2
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--cCCChhHHHHHHHHHHHCCCCCCHHHHHH----------
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTM--KGSRLQDTFFFRDQMKANGFLPDVAVYNY---------- 116 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------- 116 (445)
..+.-.|+.++|.+.--...+.. ....+..++++.+ -..+.+.+..-|++-...+ |+...--.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 45556677777777665555432 2234555555433 4567788888888777654 55433222
Q ss_pred ---HHHHHHccCCHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 117 ---LISVCGKCKNSDQAIRIFEEMKKY---EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 117 ---ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
=-+-..+.|++.+|.+.|.+-... .++|+...|-..-....+.|+..+|+.-.+...+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 223346778889999999887753 4566777787778888888999998888777665
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.42 E-value=3.3e+02 Score=24.36 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCCHHHHH
Q 013323 263 AFHACAELKDVQAMETLLEMLKKDRKSPD-------VYIVMQNIRCYLHSGDIDNGHKVFEDYICS----EKFPPAELYA 331 (445)
Q Consensus 263 li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~ 331 (445)
+..-..+.+++++|...+.++...|...| ..+...+...|...|+...--+.....++. .-.-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCc-----chhhHHHHHhhcccCCChhhHHHH----HHHHHHCCCCCCH
Q 013323 332 TLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSP-----RMGSDLLLVAAGEKSGGYTTANYI----WDLMQARKITPSL 402 (445)
Q Consensus 332 ~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~g~~~~A~~~----~~~m~~~~~~p~~ 402 (445)
+||.-+ .+.....+...++.....+...+-+. ..-.-++..+- +.|.+.+|..+ +.++++.+-+|+.
T Consensus 89 tLiekf--~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y--~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 89 TLIEKF--PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLY--KTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHhc--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHhhcCccce
Q ss_pred HHHHHH
Q 013323 403 PAVEAY 408 (445)
Q Consensus 403 ~~~~~l 408 (445)
.+...+
T Consensus 165 i~vhll 170 (421)
T COG5159 165 ITVHLL 170 (421)
T ss_pred eehhhh
No 388
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.20 E-value=3e+02 Score=23.86 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=65.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhC------------CCCCCcchh
Q 013323 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSR------------NIFLSPRMG 368 (445)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~------------~~~p~~~~~ 368 (445)
|.+..+..--.++.+-....++.-+..-..+++- ...|+ .+|+.-+..-... -=.|.+...
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiif------ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v 242 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIF------TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLV 242 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhh------hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHH
Confidence 4444444444455555555567666666666663 55665 6666655443211 114777777
Q ss_pred hHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhh
Q 013323 369 SDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412 (445)
Q Consensus 369 ~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 412 (445)
..++..| ..+++++|.+++.++-+.|+.|... .+.+++..
T Consensus 243 ~~ml~~~---~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 243 KKMLQAC---LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHHH---HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 7788777 5899999999999999999988764 44455544
No 389
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.87 E-value=89 Score=20.59 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=28.8
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK 88 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 88 (445)
.|+...++.++..+++..-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666664 345555555555543
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.71 E-value=2.4e+02 Score=24.52 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=29.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh----CC-CCccHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 013323 117 LISVCGKCKNSDQAIRIFEEMKK----YE-VKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172 (445)
Q Consensus 117 ll~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 172 (445)
+-.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+--+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455566666666666665531 12 2233444555555556666665555544333
No 391
>PRK09857 putative transposase; Provisional
Probab=34.66 E-value=3.4e+02 Score=24.37 Aligned_cols=66 Identities=11% Similarity=-0.030 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN 145 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 145 (445)
+..++.-..+.++.++..++++.+.+. ++......-++..-+-+.|.-+++.++...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 556666556778877788888877765 223333334555666666777788888999998888655
No 392
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=34.63 E-value=3e+02 Score=24.91 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
+.+...++-.-..+.|+..|...+..++ -...|++.+|+-.++.+...|-..+...-+.++.
T Consensus 190 d~~iv~rL~~Ia~~E~v~~d~~al~~I~--~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 190 DEDIVDRLEKIASKEGVDIDDDALKLIA--KISDGDLRRAITTLQSLSLLGKRITTSLVNEELA 251 (346)
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHH--HHcCCcHHHHHHHHHHhhccCcccchHHHHHHHh
Confidence 3334444444444567777777777555 3667888888888887776655555444444443
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=34.20 E-value=4.4e+02 Score=25.51 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=42.7
Q ss_pred hcccHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-
Q 013323 269 ELKDVQAME-TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM- 346 (445)
Q Consensus 269 ~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~- 346 (445)
..|++..|. +++..+....-.|+....-+.| +...|++|.+.+.+...... +.....+-.++++ .....|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r----~~~~l~r~ 373 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLR----SLHGLARW 373 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHH----hhhchhhH
Confidence 345544433 4444444444445554444443 34556666666655544332 2224445555555 3344444
Q ss_pred HHHHHHHHHHHhCCCC
Q 013323 347 QLAQDTLVNMNSRNIF 362 (445)
Q Consensus 347 ~~a~~~~~~m~~~~~~ 362 (445)
+.|..+-+.|....+.
T Consensus 374 ~~a~s~a~~~l~~eie 389 (831)
T PRK15180 374 REALSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHHHHhccccC
Confidence 6666666666555543
No 394
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=34.11 E-value=39 Score=31.70 Aligned_cols=129 Identities=13% Similarity=0.033 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC------CCC---CCHHHHHHHHHhHh-hc
Q 013323 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS------EKF---PPAELYATLVEGAM-FG 340 (445)
Q Consensus 271 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~---p~~~~~~~li~~~~-~~ 340 (445)
+.+++-.++++.+.+.| .+|.-+.+ |++|.+.+++++|.+.+++=.+. |.+ -...+...++.++- .-
T Consensus 29 ~~~~~~i~lL~~l~~~g-~~d~lp~T--iDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhG~~~~R~v~~~v~~Pv 105 (441)
T PF06368_consen 29 ALPEEMIELLQYLRDEG-GADVLPLT--IDSYTRQNDYEEAERGLEESIETGRSMLNGFPLVNHGVETCRKVLEAVDFPV 105 (441)
T ss_dssp SSHHHHHHHHHHHHHTT---SSEEEE--B-HHHHTT-HHHHHHHHHHHHHHTS--SSSB-HHHHHHHHHHHHHHH-SS-E
T ss_pred CCHHHHHHHHHHHHhcc-CCCeecee--eecccccccHHHHHHHHHhchhcCcccccCCccccccHHHHHHHHHhCCCCe
Confidence 46788888888888764 23433333 78899999999999999877763 221 12334455555320 01
Q ss_pred CChhhHHHHHHHHHHHHhCCCCC---CcchhhHHHHHhhcccCCChhhHHHH-------HHHHHHCCCCCCHHHHHH
Q 013323 341 YTPKGMQLAQDTLVNMNSRNIFL---SPRMGSDLLLVAAGEKSGGYTTANYI-------WDLMQARKITPSLPAVEA 407 (445)
Q Consensus 341 ~~~~g~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~g~~~~A~~~-------~~~m~~~~~~p~~~~~~~ 407 (445)
-.++|-..+..+++.+...|+.- .+.+|+. -|+ |.=-++++..- +-...+.|+.|+.++|--
T Consensus 106 QvRHGtpdarlL~e~~~a~G~ta~EGG~ISYnl---PY~--k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FGp 177 (441)
T PF06368_consen 106 QVRHGTPDARLLAEIALASGFTAFEGGPISYNL---PYS--KNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFGP 177 (441)
T ss_dssp EEE---SS-HHHHHHHHHTT--EEE--TTTTTT---TT---SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--TT
T ss_pred eccCCCCcHHHHHHHHHHcCCCccCCCceeecc---ccC--CCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCCC
Confidence 14556667888888888888642 2345441 232 54444444443 334446788777666543
No 395
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.00 E-value=4.6e+02 Score=25.62 Aligned_cols=77 Identities=6% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 013323 94 DTFFFRDQM-KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172 (445)
Q Consensus 94 ~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 172 (445)
+..+.++.. ...|+..+......+... ..|++..|+.++++....+ ....++..+...+. .-+.+...++++.+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg-~~~~~~~~~l~~si 258 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIG-YHGIEFLTSFIKSL 258 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 333444444 345777777777666654 4699999999999866432 12345665555442 22455555566666
Q ss_pred HHc
Q 013323 173 TAA 175 (445)
Q Consensus 173 ~~~ 175 (445)
...
T Consensus 259 ~~~ 261 (484)
T PRK14956 259 IDP 261 (484)
T ss_pred HcC
Confidence 554
No 396
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.89 E-value=1.1e+02 Score=22.73 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=26.7
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 379 KSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
..+..-.|.++++++.+.+..++..|.-.-++.+.+.|..
T Consensus 12 ~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 12 ESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred hCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3455556777888887777667777766666666666654
No 397
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=33.73 E-value=1.7e+02 Score=21.81 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=12.8
Q ss_pred HHHHHHHHHHH-CCCCC-CHHHHHHHHHHH
Q 013323 59 LLRDVYDDMML-DGVQP-TRDLFHSLIVGT 86 (445)
Q Consensus 59 ~a~~~~~~m~~-~g~~p-~~~~~~~ll~~~ 86 (445)
++.+.+..+++ -|+.| |+..=-++...+
T Consensus 7 ~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL 36 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITPWNILCRIAFCRSL 36 (113)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 44455555443 45666 444433333333
No 398
>PHA03100 ankyrin repeat protein; Provisional
Probab=33.33 E-value=3e+02 Score=26.60 Aligned_cols=137 Identities=8% Similarity=-0.054 Sum_probs=65.9
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHH--HHHHHHH-----HhcCCChhHHHHHHHHHHHCCCCCCH---HHHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVG-----TMKGSRLQDTFFFRDQMKANGFLPDV---AVYN 115 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~ 115 (445)
..+...++.|+.+- ++.+.+.|..|+... ....+.. ++..++.+ +.+.+.+.|..++. .-.+
T Consensus 37 t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 44555667777654 444455677665432 1233344 44455444 44555566654432 2234
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHhCCCCccHHH--HHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 013323 116 YLISVCG-KCKNSDQAIRIFEEMKKYEVKPNGQT--YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY--AGLITA 190 (445)
Q Consensus 116 ~ll~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~ 190 (445)
.|..+.. +.|+.+-+. .+.+.|..++... -.+.+..++..|. .-.++.+.+.+.|..++.... .+.+..
T Consensus 109 pL~~A~~~~~~~~~iv~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~ 182 (480)
T PHA03100 109 PLLYAISKKSNSYSIVE----YLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHI 182 (480)
T ss_pred hhhHHHhcccChHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence 4444432 566655444 3444555443221 1234555555552 223456666777766543322 233444
Q ss_pred HHccCC
Q 013323 191 HTNKIP 196 (445)
Q Consensus 191 ~~~~~~ 196 (445)
.+..|.
T Consensus 183 A~~~~~ 188 (480)
T PHA03100 183 AVEKGN 188 (480)
T ss_pred HHHhCC
Confidence 444443
No 399
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=33.12 E-value=3e+02 Score=23.18 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 298 NIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 298 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
.+..|...++.+.|..+++.+.... .|+...|..++-
T Consensus 134 ~~~~~i~~~~~~~a~~~l~~l~~l~-~~~~~~~~ki~~ 170 (220)
T TIGR01716 134 IAVLLIEKNEFSYAQYFLEKLEKIL-DPEDDLYERILF 170 (220)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHh-chhhhHHHHHHH
Confidence 3444556678888888888887764 344455544443
No 400
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.06 E-value=1.2e+02 Score=25.56 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHhcCC---------ChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 013323 57 FFLLRDVYDDMMLDGVQ-------PTRDLFHSLIVGTMKGS---------RLQDTFFFRDQMKANGFLP-DVAVYNYLIS 119 (445)
Q Consensus 57 ~~~a~~~~~~m~~~g~~-------p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 119 (445)
.+.|..++..|--..++ -...-|..+-.+|++.| +.+....+++...+.|++. =+++|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 56677777777543222 13445777777777765 4455556666666666532 2355666666
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (445)
--...-++++..++|..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555555666666666554
No 401
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.82 E-value=1.3e+02 Score=22.56 Aligned_cols=48 Identities=6% Similarity=-0.033 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 149 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
=..++......+..-.|.++++.|.+.|...+..|.--.|+.+.+.|-
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 345677777777788899999999988877777766666666666653
No 402
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.44 E-value=7.1e+02 Score=27.34 Aligned_cols=135 Identities=11% Similarity=0.090 Sum_probs=69.9
Q ss_pred HHHhcCcHhHHHHHHHHHHHC-----CCCCCHH--HHHHHHHHHhcCC--ChhHHHHHHHHHHHCC--------CCCCHH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLD-----GVQPTRD--LFHSLIVGTMKGS--RLQDTFFFRDQMKANG--------FLPDVA 112 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~--~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g--------~~p~~~ 112 (445)
+-....+..+-+-+++++++. .++.|.. -|...+.-+.+.| .+++++.+. +++| ..|+..
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I---~kh~Ly~~aL~ly~~~~e 936 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYI---KKHGLYDEALALYKPDSE 936 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHH---HhcccchhhhheeccCHH
Confidence 334455666666666666532 1222222 2444444444454 344444332 2333 246666
Q ss_pred HHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 113 VYNYLISVCG----KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 113 ~~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
.+..+..+|+ +...+++|--.|+..-+ ..-.+.+|..+|+|.+|+.+-.+|....- --..+-..|+
T Consensus 937 ~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~ 1006 (1265)
T KOG1920|consen 937 KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD-ELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHH
Confidence 6555555444 45666777666665432 34557777788888888887777654210 0111224455
Q ss_pred HHHHccCCC
Q 013323 189 TAHTNKIPR 197 (445)
Q Consensus 189 ~~~~~~~~~ 197 (445)
.-+...++.
T Consensus 1007 s~L~e~~kh 1015 (1265)
T KOG1920|consen 1007 SRLVEQRKH 1015 (1265)
T ss_pred HHHHHcccc
Confidence 555555543
No 403
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=32.30 E-value=1.2e+02 Score=23.54 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=31.2
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 190 (445)
++.-+.+.|-..+...++++|.++|+..+..+|+.++.-
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344455668888889999999999999999998887754
No 404
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=32.23 E-value=7.1e+02 Score=27.32 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=30.2
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYI 319 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (445)
.|+..+...+++-+|-++..+.... +.-.+..||+...+++|.++-..-.
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 4555566666666666665554321 2334566777888888887765443
No 405
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=32.11 E-value=1.6e+02 Score=26.97 Aligned_cols=79 Identities=13% Similarity=-0.069 Sum_probs=49.0
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhh
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 164 (445)
|.+.|.+++|.+.|..-... .| +.+++..-..+|.+...+..|+.=-...... =...+.+|.|.+.-..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQARE 176 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHHH
Confidence 56788888888888766553 35 7788888888888877776555443333321 1234566666655555
Q ss_pred HHHHHHHHHH
Q 013323 165 VYAIVRDMTA 174 (445)
Q Consensus 165 a~~~~~~m~~ 174 (445)
++....+.++
T Consensus 177 ~Lg~~~EAKk 186 (536)
T KOG4648|consen 177 SLGNNMEAKK 186 (536)
T ss_pred HHhhHHHHHH
Confidence 5555444443
No 406
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=31.99 E-value=62 Score=22.54 Aligned_cols=32 Identities=6% Similarity=0.233 Sum_probs=26.0
Q ss_pred CCCCChhhHHHHHHHHHhcCcHhHHHHHHHHH
Q 013323 36 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDM 67 (445)
Q Consensus 36 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 67 (445)
.|.|+...||.++......+.+..|..++.+.
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~ 42 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRI 42 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 46799999999999988888888887666655
No 407
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.90 E-value=4.9e+02 Score=25.30 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc-------CChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChh
Q 013323 273 VQAMETLLEMLKKDRK-SPDVYIVMQNIRCYLHS-------GDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344 (445)
Q Consensus 273 ~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~-------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 344 (445)
.....+++..+.+.+. .++......++...+.. .+++.++.+|+.+...|..|+...... |..++..+...
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~-i~vLCsi~~~~ 229 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPC-IEVLCSIVNSV 229 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHH-HHHHhhHhccc
Confidence 3444444444444432 34544444444432221 345677777777777777665444433 34444344444
Q ss_pred hH-HHHHHHHHHHHhCC
Q 013323 345 GM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 345 g~-~~a~~~~~~m~~~~ 360 (445)
.. +.++++++.+.+..
T Consensus 230 ~l~~~~w~~m~nL~~S~ 246 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSH 246 (464)
T ss_pred ccchhHHHHHHHHHcCc
Confidence 44 66666666666543
No 408
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.33 E-value=3.1e+02 Score=22.92 Aligned_cols=87 Identities=14% Similarity=0.044 Sum_probs=54.7
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHc
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-----SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 159 (445)
.....++++.|..-++..... |....+..|+ ......|.+|+|+.+++.....+.. ......--..+...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 456678888888777776642 4444444443 3455677888888888776654321 11223334556777
Q ss_pred CChhhHHHHHHHHHHcC
Q 013323 160 GQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 160 g~~~~a~~~~~~m~~~g 176 (445)
|+-++|..-|..-.+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888777764
No 409
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=31.24 E-value=1.3e+02 Score=19.78 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=34.0
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 379 KSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
.++.+-.+..+.+.+...|...+..+....++++.+.|..
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt 48 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLT 48 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCc
Confidence 6777777888888888889999999999999999888844
No 410
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=31.12 E-value=5.4e+02 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 013323 70 DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 70 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
.|+..+......++..+ .|+...++..++++.
T Consensus 195 EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLi 226 (824)
T PRK07764 195 EGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL 226 (824)
T ss_pred cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 44444444444444333 245555555555443
No 411
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.96 E-value=1.7e+02 Score=22.79 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 74 PTRDLFHSLIVGTMKGS---RLQDTFFFRDQMKANGF-LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 74 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
|+..+--.+-.++.+.. +..+...+++++.+..- .......--|--++.+.++++++.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44444333444444433 45556667777775221 112333334555677778888888877777653
No 412
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.66 E-value=4e+02 Score=23.89 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=51.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC
Q 013323 81 SLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160 (445)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 160 (445)
.++....+.++.....+.+..+.. ...-..-+......|++..|++++.+..+.- -+..-|+.+=.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHH---hH
Confidence 344555555555555555555543 2233445666667777777777777665420 000111111110 11
Q ss_pred ChhhHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCC
Q 013323 161 QLDPVYAIVRDMTAAG-----AGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 161 ~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~ 196 (445)
++++.....+++.+.. ..-|+..|..++.||.-.|+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk 212 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGK 212 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 2233333333322211 14577778888888777764
No 413
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.63 E-value=1.8e+02 Score=21.68 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=12.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCC
Q 013323 83 IVGTMKGSRLQDTFFFRDQMKANG 106 (445)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~g 106 (445)
++-+.++...++|+++.+.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333444555555555555555554
No 414
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.42 E-value=5.4e+02 Score=25.38 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 145 NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 145 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
+....-.++.+... ++.+.++.++++|...|..|.
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444445555444 677777777777777776654
No 415
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.37 E-value=3.2e+02 Score=22.90 Aligned_cols=64 Identities=6% Similarity=-0.050 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (445)
....+.+++.+...|+++.|-+.|.-+.+..-.-=...|..=+..+.+.+.-....+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 416
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.36 E-value=1.6e+02 Score=20.33 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCC
Q 013323 82 LIVGTMKGSRLQDTFFFRDQMKANG 106 (445)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~g 106 (445)
+++-+.++...++|+++.+.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4444555566666666666666655
No 417
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.97 E-value=96 Score=23.22 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=30.6
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 379 KSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
..+..-.|.++++.|.+.+..++..|.-.-++.+.+.|..
T Consensus 19 ~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 19 ESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred cCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 4455777899999999999888888877778888887765
No 418
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=29.74 E-value=3.9e+02 Score=26.32 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=18.5
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHH
Q 013323 379 KSGGYTTANYIWDLMQARKITPSLPA 404 (445)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~~~~p~~~~ 404 (445)
..|+...++..++++.+.|..|....
T Consensus 257 ~~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 257 LKGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 46777777777777777777666543
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.73 E-value=4.8e+02 Score=24.53 Aligned_cols=57 Identities=14% Similarity=-0.020 Sum_probs=42.3
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChhhHHHHHHHHHhC
Q 013323 264 FHACAELKDVQAMETLLEMLKKDRKSPDVY--IVMQNIRCYLH--SGDIDNGHKVFEDYICS 321 (445)
Q Consensus 264 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~m~~~ 321 (445)
...+.+.+++..|.++++.+.+. ++++.. .|..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455789999999999999886 555554 45556666654 66788999999987765
No 420
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.65 E-value=3.3e+02 Score=22.70 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=43.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 013323 261 HVAFHACAELKDVQAMETLLEMLKKDRK--------------SPDVYIVMQNIRCYLHSGDIDNGHKVFE 316 (445)
Q Consensus 261 ~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (445)
-++|-.|-+.-++.++.++++.|.+..+ .+--...|.-...|.+.|.+|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3577778888899999999988865432 2333466777888999999999999887
No 421
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.43 E-value=1.3e+02 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.094 Sum_probs=34.2
Q ss_pred chhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhh
Q 013323 366 RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGL 412 (445)
Q Consensus 366 ~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 412 (445)
-|...++.+. +.|-+.+...++++|.+.|+..+..+|+.+++-.
T Consensus 111 GtlGvL~~ak---~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 111 GTLGVLALAK---SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred ehhHHHHHHH---HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3555555555 6888888889999999999999999988877644
No 422
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.74 E-value=2.9e+02 Score=21.67 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCCh
Q 013323 126 NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162 (445)
Q Consensus 126 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 162 (445)
..-.|.++++.+.+.+...+..|.--.|..+...|-+
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445555555555555444444444445555555543
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.68 E-value=2.2e+02 Score=20.20 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=28.0
Q ss_pred HccCCHHHHHHHH----HHHHhCCCCcc--HHHHH--HHHHHHHHcCChhhHHHHHHHHHH
Q 013323 122 GKCKNSDQAIRIF----EEMKKYEVKPN--GQTYV--CLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 122 ~~~g~~~~a~~~~----~~m~~~g~~p~--~~~y~--~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.+.|++..|.+-+ +.....+..+. ...+. .+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566766664433 33333332221 12222 233445567888888888887755
No 424
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=28.59 E-value=3.3e+02 Score=22.27 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 59 LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 59 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
...++-..+.+.++.++. ...+++.+.+.|+.-|...--+.+..-.+.| ..-..+.+++.
T Consensus 36 se~ELr~kL~k~~~~~~~------------------Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~ 95 (174)
T COG2137 36 SEKELRRKLAKKEFSEEI------------------IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELK 95 (174)
T ss_pred HHHHHHHHHHhccCCHHH------------------HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHH
Confidence 345666777777776654 5566667777777666666666777777776 44556778888
Q ss_pred hCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 139 KYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 139 ~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
+.|+ +..+-...+..+......+.|..++..-... +..|+..-...+...+...|- ..+.+..++..+.
T Consensus 96 qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGF-s~~~i~~~l~~~~ 165 (174)
T COG2137 96 QKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGF-SYEVIKEALNEAE 165 (174)
T ss_pred HcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCC-CHHHHHHHHHHhh
Confidence 8885 5555667777666666667777666655444 356676666666666665553 3455555555444
No 425
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.39 E-value=3.6e+02 Score=22.61 Aligned_cols=88 Identities=7% Similarity=0.046 Sum_probs=65.1
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLI-----VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 123 (445)
..+...++++.|..-++.-... |....+..++ +.....|.+++|+.+++.....++. ......--+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 5677889999999988876643 4445555444 3566789999999999988875532 2223334467888
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 013323 124 CKNSDQAIRIFEEMKKYE 141 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g 141 (445)
.|+-++|..-|+.-.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999998875
No 426
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.03 E-value=1.1e+02 Score=16.80 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=16.5
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 382 GYTTANYIWDLMQARKITPSLPAVEAY 408 (445)
Q Consensus 382 ~~~~A~~~~~~m~~~~~~p~~~~~~~l 408 (445)
.++.|..+|++... +.|++.+|-.+
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 45677778877775 35777666544
No 427
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.78 E-value=1.9e+02 Score=19.59 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 013323 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124 (445)
Q Consensus 91 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 124 (445)
+.+.|..++.+++... +.++..||++-+.+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4455666666655432 35566666666655443
No 428
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.61 E-value=4.5e+02 Score=27.53 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 273 VQAMETLLEMLK-KDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 273 ~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.++..+.++.+. ..|+..+......+. ....|++..|+.+++.....
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA--~~A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLA--RAAQGSMRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHh
Confidence 345555555443 456666665554332 35568888888887775543
No 429
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.20 E-value=2.3e+02 Score=20.04 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 013323 60 LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 60 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 130 (445)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| |+ .|...++++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 3455566655554 233333333333334566666666666666 43 32 345566665555554443
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.01 E-value=1e+02 Score=15.84 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=16.1
Q ss_pred CChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 381 GGYTTANYIWDLMQARKITPSLPAVEAYY 409 (445)
Q Consensus 381 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 409 (445)
|+.+.|..+|+++...- .-+...|..++
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 45677778888777432 13444444444
No 431
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=26.72 E-value=4.8e+02 Score=23.61 Aligned_cols=118 Identities=8% Similarity=0.026 Sum_probs=53.2
Q ss_pred ccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH---
Q 013323 253 LSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAEL--- 329 (445)
Q Consensus 253 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--- 329 (445)
.+|+..+-..+-..+...|--+...-.-..+-. | .--..-..|..-..+...+++......+-.+..--|++..
T Consensus 219 fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~i 295 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGI 295 (412)
T ss_pred cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEee
Confidence 367766666666666666643322211111100 0 0001112233333344445555554444333334456554
Q ss_pred -HHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhH
Q 013323 330 -YATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386 (445)
Q Consensus 330 -~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A 386 (445)
|+.++.+. -..+....-|.+.++.++ +|..|+.+++ ..|+.+.+
T Consensus 296 vWs~iMsav--eWnKkeelva~qalrhlK---------~yaPLL~af~--s~g~sEL~ 340 (412)
T KOG2297|consen 296 VWSGIMSAV--EWNKKEELVAEQALRHLK---------QYAPLLAAFC--SQGQSELE 340 (412)
T ss_pred eHhhhhHHH--hhchHHHHHHHHHHHHHH---------hhhHHHHHHh--cCChHHHH
Confidence 44444421 112111134445544443 5667777665 77777655
No 432
>PHA02743 Viral ankyrin protein; Provisional
Probab=26.65 E-value=3.1e+02 Score=21.94 Aligned_cols=79 Identities=15% Similarity=0.032 Sum_probs=37.3
Q ss_pred HHhcCcHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcc
Q 013323 51 LTSQRRFFLLRDVYDDMMLDGVQPTRD---LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV---YNYLISVCGKC 124 (445)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~ 124 (445)
.++.|+.+...++++.+.+.|..++.. -++.+.. .+..|.. +...+.+.+.+.|..++... -.+.+...+..
T Consensus 27 a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~-Aa~~g~~-~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~ 104 (166)
T PHA02743 27 ICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHM-VAWYDRA-NAVMKIELLVNMGADINARELGTGNTLLHIAAST 104 (166)
T ss_pred HHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHH-HHHhCcc-CHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHh
Confidence 346777777777777666655433221 1223333 3333332 22333455556665544321 22334444455
Q ss_pred CCHHHHH
Q 013323 125 KNSDQAI 131 (445)
Q Consensus 125 g~~~~a~ 131 (445)
|+.+-+.
T Consensus 105 g~~~iv~ 111 (166)
T PHA02743 105 KNYELAE 111 (166)
T ss_pred CCHHHHH
Confidence 6654443
No 433
>PHA02989 ankyrin repeat protein; Provisional
Probab=26.20 E-value=6.2e+02 Score=24.70 Aligned_cols=14 Identities=7% Similarity=-0.325 Sum_probs=6.5
Q ss_pred HHHHHHHHHCCCCC
Q 013323 96 FFFRDQMKANGFLP 109 (445)
Q Consensus 96 ~~~~~~m~~~g~~p 109 (445)
.++.+.+.+.|..+
T Consensus 88 ~~iv~~Ll~~Gadi 101 (494)
T PHA02989 88 KKIVKLLLKFGADI 101 (494)
T ss_pred HHHHHHHHHCCCCC
Confidence 34444555555433
No 434
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=26.01 E-value=3.6e+02 Score=21.82 Aligned_cols=227 Identities=14% Similarity=0.020 Sum_probs=140.8
Q ss_pred CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHHcCChhhHH
Q 013323 89 GSRLQDTFFFRDQMKANGFL-PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVKPNGQTYVCLLNACAAAGQLDPVY 166 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~a~ 166 (445)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654422 13677778888888888888888888877652 23445667777777788888888898
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhH
Q 013323 167 AIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245 (445)
Q Consensus 167 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
..+.........+. ...+.... .+...|+. +.+...++........
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~a~~~~~~~~~~~~~------------------------------ 162 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALG-ALYELGDY--EEALELYEKALELDPE------------------------------ 162 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHH-HHHHcCCH--HHHHHHHHHHHhcCCC------------------------------
Confidence 88888887544331 12222221 55566655 7777777776432100
Q ss_pred HhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 013323 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325 (445)
Q Consensus 246 ~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 325 (445)
.......+......+...++.+.+...+..............+..+-..+...++++.|...+.........
T Consensus 163 -------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~- 234 (291)
T COG0457 163 -------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD- 234 (291)
T ss_pred -------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-
Confidence 001222233333336777888888888887766422114667777888888888889998888887775221
Q ss_pred CHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCC
Q 013323 326 PAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 326 ~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~ 360 (445)
....+..+.. .+...+. +.+...+.+.....
T Consensus 235 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 235 NAEALYNLAL----LLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHhhHHH----HHHHcCCHHHHHHHHHHHHHhC
Confidence 1222222222 1235554 77777777776654
No 435
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.00 E-value=2.6e+02 Score=20.56 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=10.3
Q ss_pred HHHHHHHHHHH-CCCCC-CHHH
Q 013323 59 LLRDVYDDMML-DGVQP-TRDL 78 (445)
Q Consensus 59 ~a~~~~~~m~~-~g~~p-~~~~ 78 (445)
+|.+.+.++++ -|+.| |+..
T Consensus 6 ~a~~~L~~Lk~~Tgi~~~Nilc 27 (105)
T TIGR03184 6 TAKDQLRRLKRRTGLTPWNILC 27 (105)
T ss_pred HHHHHHHHHhcccCCCcchHHH
Confidence 45555555544 45666 4444
No 436
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.84 E-value=4.3e+02 Score=22.67 Aligned_cols=109 Identities=11% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHHHHHh--cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH
Q 013323 70 DGVQPTRDLFHSLIVGTM--KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147 (445)
Q Consensus 70 ~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 147 (445)
.+++|+ |...+.++. ..+++++|.+.+- .-.+.|+-. .-++.++...|+.+.|+.+++.+.-..- +..
T Consensus 73 f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~ 142 (226)
T PF13934_consen 73 FGIPPK---YIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLS--SPE 142 (226)
T ss_pred hCCCHH---HHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCC--CHH
Confidence 456544 555555543 4567777766662 222223322 2477888888999999999988653221 222
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 192 (445)
.-..++.. ..++.+.+|...-+...+.. ....+..++..+.
T Consensus 143 ~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 143 ALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 33333334 56688888887766665531 1334444444443
No 437
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.70 E-value=6.6e+02 Score=24.81 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=5.1
Q ss_pred HHHHHHHH
Q 013323 328 ELYATLVE 335 (445)
Q Consensus 328 ~~~~~li~ 335 (445)
..|..++.
T Consensus 383 ~~W~~lv~ 390 (509)
T PRK14958 383 TSWPQLLS 390 (509)
T ss_pred chHHHHHH
Confidence 34777776
No 438
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.39 E-value=1.1e+02 Score=21.95 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=32.4
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 146 (445)
+..+...+..+|..+.+.|. ++...+..|...+...++.+-- .++..-++..+.|+.
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 44566777777777777774 3333444566655555555544 454444444555554
No 439
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.26 E-value=4.4e+02 Score=22.62 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHhcCCChhHHHHHHHHHH
Q 013323 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP---TRDLFH--SLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 37 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
+.+...-+|.||--|.-...+.+|-+.|.. ..|++| |..+++ .-|......|++++|.+...++.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 344555555555555555555444444432 334444 233332 23344455566666655555543
No 440
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.15 E-value=6.8e+02 Score=24.78 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=35.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVK-PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
...|+.-|.+.+++++|..++..|.-.-.. ---.+.+.+.+...+..--++.+..++.....
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346778899999999999999888643210 01223344444444444344444555555443
No 441
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=25.10 E-value=2.1e+02 Score=26.15 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=34.5
Q ss_pred HHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHH
Q 013323 266 ACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHK 313 (445)
Q Consensus 266 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 313 (445)
.|.+.|.+++|...+..-.. +.| |.++|..-..+|.+..++..|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 36778889999888876443 456 78888888888888887775544
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=24.94 E-value=2.9e+02 Score=20.39 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=23.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999988876
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.73 E-value=3.2e+02 Score=24.67 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 013323 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193 (445)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 193 (445)
.++|+.|...++.|.-.++.-+.-.+.+.=.+.+++.+++.+... ..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 478999999999999999999988899999999999999999874 3337888887775
No 444
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.65 E-value=4.8e+02 Score=22.86 Aligned_cols=213 Identities=12% Similarity=0.081 Sum_probs=113.3
Q ss_pred CCCCHH----HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH
Q 013323 72 VQPTRD----LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147 (445)
Q Consensus 72 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 147 (445)
.+||.. .|...-.++...++++.|...+....+. .+-+..-|.+ ...++.|..+.++|... .--..
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvd 92 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVD 92 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHH
Confidence 456644 3555555677778888888766665531 1222222222 23457777777777652 11235
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCcccccccccc
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTA--AGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNA 225 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 225 (445)
.|+-....|...|.++.|-..+++.-+ .++.|+ .|.+++++-.......
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd--------------------~AlqlYqralavve~~--------- 143 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPD--------------------DALQLYQRALAVVEED--------- 143 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHH--------------------HHHHHHHHHHHHHhcc---------
Confidence 678888889999999888887777644 234443 3444433321110000
Q ss_pred chhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCCCH-HHHHHHHH
Q 013323 226 ENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSPDV-YIVMQNIR 300 (445)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~ 300 (445)
+..+--...|..+-..+.+..++++|-..+..-... .--|+. ..|-+.|-
T Consensus 144 -------------------------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~il 198 (308)
T KOG1585|consen 144 -------------------------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAIL 198 (308)
T ss_pred -------------------------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHH
Confidence 000111122334444555666666655444332111 112222 24566677
Q ss_pred HHHhcCChhhHHHHHHHHHhCC---CCCCHHHHHHHHHhHhhcCChhhHHHHHHH
Q 013323 301 CYLHSGDIDNGHKVFEDYICSE---KFPPAELYATLVEGAMFGYTPKGMQLAQDT 352 (445)
Q Consensus 301 ~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~g~~~a~~~ 352 (445)
.|....++..|...++.-.+.+ -.-+..+...||. +|-....+.+.++
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~----ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT----AYDEGDIEEIKKV 249 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH----HhccCCHHHHHHH
Confidence 7777888888888888744332 2235566677776 5544443555444
No 445
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.54 E-value=7.6e+02 Score=25.13 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=52.0
Q ss_pred HHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-C------------ccHHHHHHHHHHHHHcCC
Q 013323 96 FFFRDQ-MKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV-K------------PNGQTYVCLLNACAAAGQ 161 (445)
Q Consensus 96 ~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~------------p~~~~y~~li~~~~~~g~ 161 (445)
.+.+.. +.+.|+..+......++.. ..|++..++.++++....|- . ++......++.+.. .|+
T Consensus 189 ~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~~d 265 (618)
T PRK14951 189 LEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-QGD 265 (618)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-cCC
Confidence 334433 3456777777777777764 35889999988876654321 1 22233334444444 478
Q ss_pred hhhHHHHHHHHHHcCCCCC
Q 013323 162 LDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 162 ~~~a~~~~~~m~~~g~~p~ 180 (445)
...++.+++++.+.|..|.
T Consensus 266 ~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 266 GRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 8999999999998887643
No 446
>PRK11619 lytic murein transglycosylase; Provisional
Probab=24.52 E-value=7.8e+02 Score=25.24 Aligned_cols=262 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKC 124 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 124 (445)
...+..+.+.+++...+.++..- +.+...-.....+....|+.++|......+=..| ......++.+++.+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH-HHcCChhhHHHHHHHHHH------cCCCCCHHHHHHHHHHHHccCCC
Q 013323 125 KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-AAAGQLDPVYAIVRDMTA------AGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~-~~~g~~~~a~~~~~~m~~------~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
|.+.... ++++|...=...+...-..+.... .....+-++..-+..-.. ..+.|+...-..+.-++.+..+.
T Consensus 177 g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 177 GKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHh
Q ss_pred chHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHH
Q 013323 198 ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAME 277 (445)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~ 277 (445)
+++.+...+........++. .....++..+....+..+..+++.
T Consensus 256 d~~~A~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~lA~~~a~~~~~~~a~ 299 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNE------------------------------------DQRQELRDIVAWRLMGNDVTDEQA 299 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCH------------------------------------HHHHHHHHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 278 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
..+....... .|.....--+..-.+.++++.+...+..|...... ...-.--+-+ ++...|. +.|...|...
T Consensus 300 ~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aR----a~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 300 KWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQAD----LLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHH----HHHHcCCHHHHHHHHHHH
No 447
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=24.47 E-value=5.4e+02 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=16.7
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCC
Q 013323 156 CAAAGQLDPVYAIVRDMTAAGAGL 179 (445)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p 179 (445)
.+..++.+...+..+++.+.|..|
T Consensus 265 ~a~S~d~~~~v~~~Rei~~sg~~~ 288 (346)
T KOG0989|consen 265 LALSADTPNTVKRVREIMRSGYSP 288 (346)
T ss_pred HHHccChHHHHHHHHHHHHhccCH
Confidence 355677777777777777777654
No 448
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=24.38 E-value=6.3e+02 Score=24.16 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=57.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhc----C-ChhhH-HHHHHHHHH
Q 013323 282 MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG----Y-TPKGM-QLAQDTLVN 355 (445)
Q Consensus 282 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~-~~~g~-~~a~~~~~~ 355 (445)
.+....+.||.++.|-+-..++..-..+....+|+-..+.+ .|=...|-+||- ++.+ + .+... +++.++++.
T Consensus 173 ~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLalii-LiNake~ILq~~sdsKEe~ikfLen 250 (669)
T KOG3636|consen 173 HLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALII-LINAKEEILQVKSDSKEEAIKFLEN 250 (669)
T ss_pred hhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHH-hcccHHHHhhhccccHHHHHHHHHc
Confidence 34445689999998888888888888888888898887763 334444444442 1111 1 11122 677888887
Q ss_pred HHhCCCCCCcchhhHHHHHhh
Q 013323 356 MNSRNIFLSPRMGSDLLLVAA 376 (445)
Q Consensus 356 m~~~~~~p~~~~~~~ll~~~~ 376 (445)
|...--.-|..-|..|..-|+
T Consensus 251 mp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 251 MPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred CchhcccccchhHHHHHHHHh
Confidence 765432235555666665553
No 449
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.32 E-value=4.2e+02 Score=22.11 Aligned_cols=26 Identities=4% Similarity=-0.046 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 149 YVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 149 y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
++...-.....|++++|..-++++.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45555555666777777777766644
No 450
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.20 E-value=2.9e+02 Score=20.20 Aligned_cols=60 Identities=5% Similarity=-0.022 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHCC
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKANG 106 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g 106 (445)
..+|.-|...+++++|.+-+.++..... .......++..+...+ .-+..-.++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 3467777888899998888888753321 2223334444444332 3444455666666554
No 451
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=24.14 E-value=1.7e+02 Score=19.76 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=26.0
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 013323 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 195 (445)
.-.|+.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345777888888888887777777766666665554443
No 452
>COG5210 GTPase-activating protein [General function prediction only]
Probab=24.07 E-value=6.9e+02 Score=24.51 Aligned_cols=94 Identities=7% Similarity=-0.111 Sum_probs=58.6
Q ss_pred HhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 013323 57 FFLLRDVYDDMMLDGVQPTRD-----LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAI 131 (445)
Q Consensus 57 ~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 131 (445)
-+.|...+..+.+...-|... ........+.. ---+..-++++.|...|+.+...++.-++..+.+.-.++.+.
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~-~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~l 397 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDD-LVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYAL 397 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHH
Confidence 556666666666622223332 22222222211 112234467888888888888889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHH
Q 013323 132 RIFEEMKKYEVKPNGQTYVC 151 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~ 151 (445)
++++.+--.|..--...+.+
T Consensus 398 riwD~lf~eg~~~l~~~~~~ 417 (496)
T COG5210 398 RIWDCLFLEGSSMLFQLALA 417 (496)
T ss_pred HHHHHHHHhccHHHHHHHHH
Confidence 99988877665433333333
No 453
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=23.72 E-value=5.5e+02 Score=23.26 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=67.8
Q ss_pred CCCChhhHHHHHHHHHh--cCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 013323 37 YANNASEYNTVVTSLTS--QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVY 114 (445)
Q Consensus 37 ~~p~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 114 (445)
+.|.++.++.+|+-|.- .+--++...++..+ .|+.++...=-+++.+..- ..|. |+..++
T Consensus 107 i~~~~qvf~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal~l---------------~nGt-~~~tvl 168 (412)
T KOG2297|consen 107 IRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTALLL---------------SNGT-LPATVL 168 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHH---------------hCCC-CCHHHH
Confidence 45778888888865433 22223333333333 3566776666666655432 2243 555566
Q ss_pred HHHHHH-HHccCC-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 013323 115 NYLISV-CGKCKN-SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192 (445)
Q Consensus 115 ~~ll~~-~~~~g~-~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 192 (445)
+.|.+- +.+.|= ..-|.++|+.-... ...+.++..+-+.+.-+.-+++ ++|+..+-...-..+.
T Consensus 169 ~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft 234 (412)
T KOG2297|consen 169 QSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFT 234 (412)
T ss_pred HHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHh
Confidence 665543 333332 24566777766532 2246666666555544443333 3677766666666665
Q ss_pred ccC
Q 013323 193 NKI 195 (445)
Q Consensus 193 ~~~ 195 (445)
..|
T Consensus 235 ~ag 237 (412)
T KOG2297|consen 235 DAG 237 (412)
T ss_pred Hhh
Confidence 544
No 454
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.71 E-value=8.3e+02 Score=25.29 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=55.6
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---CC----------ccHHHHHHHHHHHHH
Q 013323 93 QDTFFFRDQM-KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE---VK----------PNGQTYVCLLNACAA 158 (445)
Q Consensus 93 ~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~----------p~~~~y~~li~~~~~ 158 (445)
++....+... .+.|+..+......|+... .|++..++.++++....| +. .+......++.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 3334444443 3557777887777777655 589999999998765432 11 122234444454444
Q ss_pred cCChhhHHHHHHHHHHcCCCCC
Q 013323 159 AGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
++...++.++++|...|+.+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 889999999999999887544
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.70 E-value=3.3e+02 Score=20.69 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 013323 94 DTFFFRDQMKANGFLP-DVAVYNYLISVCGKCKNSDQAIRIFE 135 (445)
Q Consensus 94 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 135 (445)
.+.++|+.|...|+-. -...|...-..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444322 23334444444444444444444443
No 456
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.47 E-value=7.6e+02 Score=24.73 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKA 104 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (445)
..+..++++....|......-+.+.+..
T Consensus 341 ~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 341 KARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3444455555555544444444444443
No 457
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=23.32 E-value=2e+02 Score=26.48 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=13.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHH
Q 013323 262 VAFHACAELKDVQAMETLLEMLK 284 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~ 284 (445)
.+++.|.+.|.+++|.++....+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHH
Confidence 45666666666666666655544
No 458
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=23.17 E-value=3.6e+02 Score=24.58 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=52.9
Q ss_pred HHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 331 ATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYY 409 (445)
Q Consensus 331 ~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 409 (445)
+.|++.+ ++.+... -...++++.+.+.+ +..-..+..+.. .|+.+.--..++.|.+.|+.+++...+++.
T Consensus 278 ~~LmdfI--~~lK~r~~y~~~kfvd~L~r~d----~e~~~~L~~ai~---~~~~~~~Ysa~R~~k~~g~~~~~~~v~~la 348 (354)
T TIGR01914 278 GVLMDFI--AYLKARDFYSWPKFVDFLARRD----PEISLQLTDAIL---NGDEEAFYTALRELKKSGVRYDPEQVDALA 348 (354)
T ss_pred hHHHHHH--HHHhhhhhcchHHHHHHHhccC----hHHHHHHHHHHH---cCChhHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 4556544 4566644 55677777776553 355667777664 777777677888899999999999999988
Q ss_pred hhhhc
Q 013323 410 NGLKD 414 (445)
Q Consensus 410 ~~~~~ 414 (445)
+.++.
T Consensus 349 e~l~~ 353 (354)
T TIGR01914 349 EILAE 353 (354)
T ss_pred HHHhc
Confidence 87754
No 459
>PHA02798 ankyrin-like protein; Provisional
Probab=23.08 E-value=3.7e+02 Score=26.24 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=5.9
Q ss_pred HHHHHHHHHCCCC
Q 013323 96 FFFRDQMKANGFL 108 (445)
Q Consensus 96 ~~~~~~m~~~g~~ 108 (445)
.++.+.+.+.|..
T Consensus 89 ~~iv~~Ll~~Gad 101 (489)
T PHA02798 89 LDIVKILIENGAD 101 (489)
T ss_pred HHHHHHHHHCCCC
Confidence 3444444444433
No 460
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.97 E-value=8.1e+02 Score=24.93 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=52.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHccCCHHHHHHH
Q 013323 67 MMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG---F----------LPDVAVYNYLISVCGKCKNSDQAIRI 133 (445)
Q Consensus 67 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~~~~~ll~~~~~~g~~~~a~~~ 133 (445)
+.+.|+..+......++... .|+...+..++++....| + .++......+++++.. |+...++++
T Consensus 196 ~~~egi~ie~~AL~~La~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~ 272 (618)
T PRK14951 196 LAAENVPAEPQALRLLARAA--RGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVET 272 (618)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 34567777777777776643 588889988887765433 1 1233444556665554 889999999
Q ss_pred HHHHHhCCCCcc
Q 013323 134 FEEMKKYEVKPN 145 (445)
Q Consensus 134 ~~~m~~~g~~p~ 145 (445)
++++...|..|.
T Consensus 273 l~~l~~~G~~~~ 284 (618)
T PRK14951 273 ADELRLNGLSAA 284 (618)
T ss_pred HHHHHHcCCCHH
Confidence 999999887655
No 461
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=22.94 E-value=8e+02 Score=24.85 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=75.5
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLD----GVQPTRDLFHSL-IVGTMKGSRLQDTFFFRDQMKANG---FLPDVAVYNYL 117 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~l 117 (445)
.++..+.+.+... |+...++..+. +..+-...|..+ +..+...++...|.+.++.+.... -.|-..++-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3445555555544 88888776652 222223334444 333334489999999998887532 34555666666
Q ss_pred HHHHH--ccCCHHHHHHHHHHHHhCC---------CCccHHHHHHHHHHHH--HcCChhhHHHHHHHHH
Q 013323 118 ISVCG--KCKNSDQAIRIFEEMKKYE---------VKPNGQTYVCLLNACA--AAGQLDPVYAIVRDMT 173 (445)
Q Consensus 118 l~~~~--~~g~~~~a~~~~~~m~~~g---------~~p~~~~y~~li~~~~--~~g~~~~a~~~~~~m~ 173 (445)
+.+.. +.+..+++.+..+++.... -.|-..+|..++..++ ..|+++.+...++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66654 3455677777777663321 2345677777777665 4677667777666654
No 462
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.81 E-value=7e+02 Score=25.67 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 274 QAMETLLE-MLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 274 ~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
++..+.+. .+.+.|+..+......++ -...|++..|..+++.+...
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA--~~S~GdLRdALnLLDQaIay 226 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIA--ESAQGSLRDALSLTDQAIAY 226 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHh
Confidence 33333333 334456665555544333 34457777777777665543
No 463
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.31 E-value=7.1e+02 Score=24.00 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=66.9
Q ss_pred HHHhcCCCCChhhH--HHHHHH-----HHhcCcHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHh-cCCChhHHHHHH
Q 013323 31 EYARRNYANNASEY--NTVVTS-----LTSQRRFFLLRDVYDDMMLDGVQPTRD---LFHSLIVGTM-KGSRLQDTFFFR 99 (445)
Q Consensus 31 ~~~~~~~~p~~~~~--~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~-~~~~~~~a~~~~ 99 (445)
.+...|..|+.... ...++. .+..|+.+ +.+.+.+.|..++.. ..+.+..++. ..|+.+- +
T Consensus 53 ~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i----v 124 (480)
T PHA03100 53 ILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSI----V 124 (480)
T ss_pred HHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHH----H
Confidence 33455666554322 234444 45555544 445555666655432 2344444442 5566554 4
Q ss_pred HHHHHCCCCCCHHH--HHHHHHHHHccC--CHHHHHHHHHHHHhCCCCccHHH--HHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 100 DQMKANGFLPDVAV--YNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQT--YVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 100 ~~m~~~g~~p~~~~--~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
+.+.+.|..++... -.+.+..+++.| +.+ +++.+.+.|..++... -.+.+..+++.|+. ++.+.+.
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~----~iv~~Ll 196 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNI----DVIKFLL 196 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCCH----HHHHHHH
Confidence 45555665553321 234555566666 443 4555556666554322 12345556666654 4555556
Q ss_pred HcCCCCC
Q 013323 174 AAGAGLD 180 (445)
Q Consensus 174 ~~g~~p~ 180 (445)
+.|..|+
T Consensus 197 ~~ga~~~ 203 (480)
T PHA03100 197 DNGADIN 203 (480)
T ss_pred HcCCCcc
Confidence 6665554
No 464
>PRK14135 recX recombination regulator RecX; Provisional
Probab=22.27 E-value=5.4e+02 Score=22.55 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHH
Q 013323 93 QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVR 170 (445)
Q Consensus 93 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 170 (445)
+.+..+++.+.+.|+.-|.......+..+.+.+. ..-.++-.++...|+.++ ....++..+...+..+.+..+.+
T Consensus 89 ~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~~~--~Ie~~l~~l~~~~~~d~a~~~~~ 163 (263)
T PRK14135 89 EIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIEDE--IIEEALSEYTEEDQIEVAQKLAE 163 (263)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCCHH--HHHHHHHhCChhhHHHHHHHHHH
Confidence 4455666777777765554444445555544432 233456667777776443 23344443323333344443333
No 465
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.17 E-value=4.9e+02 Score=22.03 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=46.0
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHH-Hhhccc
Q 013323 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLL-VAAGEK 379 (445)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~ 379 (445)
+.++|++++|..-|.......-......-++|...-..++.+.+. +.|.+--.+.++. ++.--.++.+ +..|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----NPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----CchhHHHHHHHHHHHHh
Confidence 456788888888777777652221222223332211112333443 4444443333332 3322233333 344557
Q ss_pred CCChhhHHHHHHHHHHC
Q 013323 380 SGGYTTANYIWDLMQAR 396 (445)
Q Consensus 380 ~g~~~~A~~~~~~m~~~ 396 (445)
...+++|+.=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 78888888877777653
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.51 E-value=5.9e+02 Score=22.78 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.++...-+..+..+..+.+..+. ....-...+......|++.+|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555556666666666664 334456677888899999999999988776
No 467
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.21 E-value=9.2e+02 Score=24.87 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=12.5
Q ss_pred HHHHHHcCChhhHHHHHHHHHH
Q 013323 153 LNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~ 174 (445)
|..+-++|.+-.|-+++.+|-+
T Consensus 930 Ie~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhH
Confidence 3445556666666666666643
No 468
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=21.09 E-value=2.6e+02 Score=21.59 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
.+..++--+...|+++.|+++.+...+.|..
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 4556777788889999999999998888863
No 469
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.08 E-value=1e+03 Score=25.39 Aligned_cols=273 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH---cCCCCCHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA---AGAGLDKFCYAG 186 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~ 186 (445)
|...-..++..=...-.+++.+.++.+-.. |..++.-|...|+.++|++++.+... ..-.--..-+..
T Consensus 477 n~~~v~~llrlen~~c~vee~e~~L~k~~~---------y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ 547 (877)
T KOG2063|consen 477 NPGLVGPLLRLENNHCDVEEIETVLKKSKK---------YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEK 547 (877)
T ss_pred CchhhhhhhhccCCCcchHHHHHHHHhccc---------HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHH
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 187 li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
+++.+.+.+....+...+.-+.+.+........-............+.+++..
T Consensus 548 ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~--------------------------- 600 (877)
T KOG2063|consen 548 IIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLN--------------------------- 600 (877)
T ss_pred HHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHH---------------------------
Q ss_pred HHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--------hhhHHHH--HHHHHhCCCCCCHHHHHHHHHh
Q 013323 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD--------IDNGHKV--FEDYICSEKFPPAELYATLVEG 336 (445)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--------~~~a~~~--~~~m~~~~~~p~~~~~~~li~~ 336 (445)
|......+.+...++.+....-.++....+.++..|+..=+ -+++.+. -+.+...--.-+...-..++.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~- 679 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE- 679 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh-
Q ss_pred HhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhcc
Q 013323 337 AMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415 (445)
Q Consensus 337 ~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 415 (445)
-....+. .+-.-++.+|.+ .......++. .-++++.|..+...--+ ...++...|..++..+...
T Consensus 680 ---~~~~~~l~ee~aill~rl~k-----he~aL~Iyv~-----~L~d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 680 ---RLNGDELYEERAILLGRLGK-----HEEALHIYVH-----ELDDIDAAESYCLPQYE-SDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred ---hccchhHHHHHHHHHhhhhh-----HHHHHHHHHH-----HhcchhHHHHHHHHhcc-CCCcccHHHHHHHHHHhcc
Q ss_pred --CCCCCCCchhhhhhcccc
Q 013323 416 --EVPADDPRLVVVSRAYDN 433 (445)
Q Consensus 416 --~~~~~a~~~l~~~~~~~~ 433 (445)
+.......+++.+..|.+
T Consensus 746 ~~d~~~~~~~il~~l~~h~~ 765 (877)
T KOG2063|consen 746 IHDYKSGPLYILNFLQKHAD 765 (877)
T ss_pred hhhccccchhhhhHHHhhhh
No 470
>COG0819 TenA Putative transcription activator [Transcription]
Probab=20.84 E-value=5.3e+02 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.349 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHhcCCChhH
Q 013323 74 PTRDLFHSLIVGTMKGSRLQD 94 (445)
Q Consensus 74 p~~~~~~~ll~~~~~~~~~~~ 94 (445)
|....|...|...+..|++.+
T Consensus 107 ~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 107 PANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred chHHHHHHHHHHHHhcCCHHH
Confidence 344445555555555554433
No 471
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=20.51 E-value=40 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
.++...+|+.|..+...|....||..+.-|
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 345555555555555555555555444433
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.46 E-value=9.8e+02 Score=24.91 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCcH---hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH-------
Q 013323 45 NTVVTSLTSQRRF---FLLRDVYDDMMLDGVQPT---RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV------- 111 (445)
Q Consensus 45 ~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~------- 111 (445)
..+++-..++++. ++-...+++|++.=-.|+ ..+...++-.|....+++...++.+.++.. ||.
T Consensus 164 EkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~ 240 (1226)
T KOG4279|consen 164 EKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETH 240 (1226)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccC
Confidence 3444444444333 344556777776533344 345666777788888899999999998873 543
Q ss_pred ---HHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCccHHH-----HHHH--HHHHHHcCChhhHHHHHHHHHHcCCCC
Q 013323 112 ---AVYNYLISVCGKCKNSDQAIRIFEEMKKY--EVKPNGQT-----YVCL--LNACAAAGQLDPVYAIVRDMTAAGAGL 179 (445)
Q Consensus 112 ---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~-----y~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (445)
+.|...++---+-||-++|+...-.|.+. .+.||... |--+ -..|-..+..+.|.+.|++.-+. +|
T Consensus 241 nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP 318 (1226)
T KOG4279|consen 241 NVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EP 318 (1226)
T ss_pred ceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cc
Confidence 23445555555678888998888777664 46677543 2211 12233344556666667665542 34
Q ss_pred CH---HHHHHHHHHHH
Q 013323 180 DK---FCYAGLITAHT 192 (445)
Q Consensus 180 ~~---~~~~~li~~~~ 192 (445)
+. .-+.+++.+-+
T Consensus 319 ~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 319 LEYSGINLATLLRAAG 334 (1226)
T ss_pred hhhccccHHHHHHHhh
Confidence 33 23455554443
No 473
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.40 E-value=5.4e+02 Score=21.85 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCCC----CHHHHHHHH-HHHHhcCChhhHHHHHHHHHhCCC
Q 013323 273 VQAMETLLEMLKKDRKSP----DVYIVMQNI-RCYLHSGDIDNGHKVFEDYICSEK 323 (445)
Q Consensus 273 ~~~a~~~~~~m~~~~~~p----~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~ 323 (445)
...|.+.|.+..+..-.| +..+..-|| ....+.|+.++|.+.|..+...+-
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 456777777655442221 333433334 456678999999999999998843
No 474
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.09 E-value=8.5e+02 Score=24.03 Aligned_cols=85 Identities=9% Similarity=0.045 Sum_probs=55.3
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc------------cHHHHHHHHHHHHHc
Q 013323 93 QDTFFFRDQM-KANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP------------NGQTYVCLLNACAAA 159 (445)
Q Consensus 93 ~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p------------~~~~y~~li~~~~~~ 159 (445)
++..+.+... .+.|+..+......++... .|++..+...++.+...+-.. .......++.++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 3344444443 3568777777777776654 588889988888876543111 122233445554 56
Q ss_pred CChhhHHHHHHHHHHcCCCCC
Q 013323 160 GQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 160 g~~~~a~~~~~~m~~~g~~p~ 180 (445)
++.++|+.+++++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 899999999999999986544
No 475
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.03 E-value=1.3e+02 Score=22.53 Aligned_cols=54 Identities=19% Similarity=0.052 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCC
Q 013323 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS 401 (445)
Q Consensus 348 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 401 (445)
.|..++.++..+=-.-+.....++..++-+-..|+++.|.+.+.....-.+.|-
T Consensus 55 ~A~~LL~ei~rRIr~GS~RL~~al~r~~~~~daGD~dgARq~m~dvLAVEvVP~ 108 (121)
T PF09543_consen 55 GAAALLREIRRRIRDGSRRLSRALHRMYRLRDAGDLDGARQEMRDVLAVEVVPH 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHhhccCHH
Confidence 445555554433111234455666666666689999999999998887777664
No 476
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=20.01 E-value=2.8e+02 Score=22.80 Aligned_cols=82 Identities=11% Similarity=0.003 Sum_probs=56.8
Q ss_pred cHhHHHHHHHHHHHCC----CCCCHH---HHHHHHHHHhcCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCH
Q 013323 56 RFFLLRDVYDDMMLDG----VQPTRD---LFHSLIVGTMKGSRLQDTFFFRDQMKA-NGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 56 ~~~~a~~~~~~m~~~g----~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
+-+.|..+|..+.+.. ..++.. .....+..+.+.. --++++.+.+ .|+.|...++.-++..+++.=..
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4567777777765532 334432 2223333333333 2467778875 89999999999999999998889
Q ss_pred HHHHHHHHHHHhCC
Q 013323 128 DQAIRIFEEMKKYE 141 (445)
Q Consensus 128 ~~a~~~~~~m~~~g 141 (445)
+.+..+|+.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998776
Done!