Query 013323
Match_columns 445
No_of_seqs 361 out of 1981
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 08:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.3E-33 1.1E-37 266.9 32.9 202 29-271 13-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 9E-34 3.1E-38 270.8 24.2 169 26-194 46-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.4E-27 4.7E-32 236.3 28.0 366 38-428 81-501 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.7E-27 9.1E-32 234.3 29.7 370 38-428 114-576 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-18 6.1E-23 161.5 37.4 331 41-395 33-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.7E-19 2.3E-23 164.4 33.1 356 48-428 6-365 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.9 1E-21 3.6E-26 193.1 11.2 151 40-195 126-286 (1134)
8 3spa_A Mtrpol, DNA-directed RN 99.8 2.7E-21 9.1E-26 190.2 11.4 118 76-193 127-248 (1134)
9 2y4t_A DNAJ homolog subfamily 99.8 1.1E-17 3.6E-22 159.3 36.1 312 38-409 23-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 1.3E-15 4.4E-20 144.9 33.8 328 38-421 57-444 (450)
11 2gw1_A Mitochondrial precursor 99.7 5.5E-16 1.9E-20 149.9 27.2 334 39-426 37-473 (514)
12 2gw1_A Mitochondrial precursor 99.7 8.1E-16 2.8E-20 148.8 26.6 333 41-428 6-441 (514)
13 3ieg_A DNAJ homolog subfamily 99.7 5.6E-14 1.9E-18 128.9 35.2 317 40-411 2-349 (359)
14 3hym_B Cell division cycle pro 99.7 6.8E-14 2.3E-18 126.9 27.5 168 36-209 17-185 (330)
15 3hym_B Cell division cycle pro 99.7 5.3E-14 1.8E-18 127.6 26.7 286 72-412 18-314 (330)
16 3fp2_A TPR repeat-containing p 99.6 7.7E-14 2.6E-18 135.7 26.8 225 148-426 245-486 (537)
17 1b89_A Protein (clathrin heavy 99.6 2.9E-15 9.8E-20 137.1 13.3 272 31-389 24-304 (449)
18 3ieg_A DNAJ homolog subfamily 99.6 8.1E-13 2.8E-17 121.1 28.6 301 75-428 2-332 (359)
19 1fch_A Peroxisomal targeting s 99.6 4E-14 1.4E-18 130.7 19.6 300 52-424 36-352 (368)
20 1fch_A Peroxisomal targeting s 99.6 2.9E-13 1E-17 124.9 24.9 235 40-320 63-313 (368)
21 4eqf_A PEX5-related protein; a 99.6 2.2E-13 7.6E-18 125.7 23.6 234 40-321 64-310 (365)
22 3fp2_A TPR repeat-containing p 99.6 2.5E-12 8.7E-17 124.9 31.9 306 38-397 56-492 (537)
23 1b89_A Protein (clathrin heavy 99.6 7.8E-16 2.7E-20 140.8 6.2 281 53-422 15-302 (449)
24 3mkr_A Coatomer subunit epsilo 99.6 4E-13 1.4E-17 119.6 22.9 251 49-360 7-265 (291)
25 3cv0_A Peroxisome targeting si 99.6 8.1E-13 2.8E-17 119.6 23.3 235 40-321 20-269 (327)
26 4eqf_A PEX5-related protein; a 99.6 4.4E-13 1.5E-17 123.7 20.9 265 75-391 64-351 (365)
27 3cv0_A Peroxisome targeting si 99.5 1.3E-12 4.5E-17 118.2 21.8 262 77-391 22-310 (327)
28 3mkr_A Coatomer subunit epsilo 99.5 1.7E-11 5.9E-16 109.0 24.5 224 43-321 36-264 (291)
29 2ooe_A Cleavage stimulation fa 99.4 2.9E-10 9.8E-15 110.4 30.0 133 39-175 11-159 (530)
30 3uq3_A Heat shock protein STI1 99.4 5.3E-11 1.8E-15 103.6 22.5 226 41-321 5-236 (258)
31 2ho1_A Type 4 fimbrial biogene 99.4 1E-10 3.5E-15 101.6 23.7 201 41-321 37-238 (252)
32 2xm6_A Protein corresponding t 99.4 1.1E-08 3.6E-13 98.3 38.6 357 38-427 36-428 (490)
33 2vq2_A PILW, putative fimbrial 99.4 4.5E-10 1.6E-14 95.3 26.0 134 40-175 7-142 (225)
34 2ho1_A Type 4 fimbrial biogene 99.4 2.9E-10 1E-14 98.6 25.1 210 77-371 38-248 (252)
35 2vq2_A PILW, putative fimbrial 99.4 3.7E-10 1.3E-14 95.9 24.8 213 75-333 7-221 (225)
36 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.4E-11 2.2E-15 104.2 19.3 223 52-321 16-244 (275)
37 1ouv_A Conserved hypothetical 99.4 3.8E-09 1.3E-13 92.9 30.6 224 40-322 5-252 (273)
38 3uq3_A Heat shock protein STI1 99.3 1.4E-10 4.7E-15 100.9 20.9 191 77-321 6-202 (258)
39 2ooe_A Cleavage stimulation fa 99.3 2.2E-09 7.5E-14 104.1 31.3 378 36-427 41-488 (530)
40 2pl2_A Hypothetical conserved 99.3 2.2E-10 7.5E-15 97.2 20.8 200 38-284 2-212 (217)
41 2xm6_A Protein corresponding t 99.3 1.6E-08 5.5E-13 97.0 35.8 335 61-427 27-392 (490)
42 2q7f_A YRRB protein; TPR, prot 99.3 5.6E-10 1.9E-14 96.1 20.3 134 39-175 21-154 (243)
43 2q7f_A YRRB protein; TPR, prot 99.3 7.2E-10 2.5E-14 95.4 20.9 201 75-321 22-222 (243)
44 2pl2_A Hypothetical conserved 99.3 7.7E-10 2.6E-14 93.8 20.3 208 108-393 2-211 (217)
45 2h6f_A Protein farnesyltransfe 99.3 5.5E-09 1.9E-13 96.2 26.9 244 41-335 97-361 (382)
46 2ond_A Cleavage stimulation fa 99.2 1.6E-08 5.6E-13 90.6 29.1 235 41-321 8-270 (308)
47 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.1E-10 1.1E-14 99.8 17.3 222 87-359 16-244 (275)
48 3u4t_A TPR repeat-containing p 99.2 2.1E-09 7.1E-14 94.3 22.4 234 42-321 4-250 (272)
49 1ouv_A Conserved hypothetical 99.2 4E-08 1.4E-12 86.3 29.3 110 75-193 5-122 (273)
50 4g1t_A Interferon-induced prot 99.2 3.5E-08 1.2E-12 94.0 30.6 336 39-425 49-453 (472)
51 3nf1_A KLC 1, kinesin light ch 99.2 2.7E-09 9.4E-14 95.4 19.2 171 39-211 25-223 (311)
52 2h6f_A Protein farnesyltransfe 99.1 3.5E-08 1.2E-12 90.8 25.5 230 77-359 98-348 (382)
53 3u4t_A TPR repeat-containing p 99.1 1E-08 3.5E-13 89.9 21.1 125 79-207 6-132 (272)
54 1xi4_A Clathrin heavy chain; a 99.1 3.2E-08 1.1E-12 101.7 26.9 132 44-197 1052-1183(1630)
55 4a1s_A PINS, partner of inscut 99.1 1.4E-09 4.8E-14 101.7 15.5 242 42-320 49-331 (411)
56 3sf4_A G-protein-signaling mod 99.1 3.5E-09 1.2E-13 98.6 17.9 158 257-420 187-365 (406)
57 1xi4_A Clathrin heavy chain; a 99.1 8E-08 2.7E-12 98.8 28.5 282 53-388 1088-1376(1630)
58 3ro2_A PINS homolog, G-protein 99.1 4.6E-09 1.6E-13 94.8 17.5 241 43-320 7-291 (338)
59 3sf4_A G-protein-signaling mod 99.1 7.8E-09 2.7E-13 96.2 19.0 281 38-359 6-336 (406)
60 2ond_A Cleavage stimulation fa 99.1 1.4E-07 4.7E-12 84.5 26.0 127 77-209 9-160 (308)
61 4a1s_A PINS, partner of inscut 99.0 3.2E-09 1.1E-13 99.3 15.4 278 78-396 50-372 (411)
62 3ro2_A PINS homolog, G-protein 99.0 6.6E-09 2.3E-13 93.8 16.7 276 79-395 8-331 (338)
63 3nf1_A KLC 1, kinesin light ch 99.0 7.7E-09 2.7E-13 92.4 16.0 137 256-395 152-306 (311)
64 3vtx_A MAMA; tetratricopeptide 99.0 9.3E-08 3.2E-12 78.3 21.3 167 110-321 4-170 (184)
65 3ulq_A Response regulator aspa 99.0 3.9E-08 1.3E-12 91.1 20.8 298 51-395 22-367 (383)
66 4g1t_A Interferon-induced prot 99.0 1.9E-07 6.5E-12 88.9 26.2 340 40-404 93-468 (472)
67 4abn_A Tetratricopeptide repea 99.0 2.8E-08 9.5E-13 94.8 19.6 215 57-317 84-317 (474)
68 4abn_A Tetratricopeptide repea 98.9 8.3E-08 2.8E-12 91.5 20.5 210 91-353 83-315 (474)
69 3vtx_A MAMA; tetratricopeptide 98.9 1.9E-07 6.4E-12 76.5 20.0 132 40-174 4-135 (184)
70 3as5_A MAMA; tetratricopeptide 98.9 1.5E-07 5.3E-12 76.7 19.2 65 256-321 109-173 (186)
71 3as5_A MAMA; tetratricopeptide 98.9 1.5E-07 5.1E-12 76.8 18.3 166 41-212 8-173 (186)
72 2fo7_A Synthetic consensus TPR 98.9 1.1E-07 3.7E-12 73.0 15.9 131 42-175 2-132 (136)
73 3edt_B KLC 2, kinesin light ch 98.8 4.8E-08 1.6E-12 85.8 14.2 30 256-285 168-197 (283)
74 3q15_A PSP28, response regulat 98.8 1.2E-06 4.2E-11 80.8 23.9 313 38-395 7-364 (378)
75 1hz4_A MALT regulatory protein 98.8 3.5E-06 1.2E-10 77.4 26.0 271 47-358 20-321 (373)
76 3ulq_A Response regulator aspa 98.8 5.3E-07 1.8E-11 83.4 19.4 233 48-320 110-367 (383)
77 3edt_B KLC 2, kinesin light ch 98.7 2.2E-07 7.4E-12 81.5 14.3 134 41-174 43-197 (283)
78 4gyw_A UDP-N-acetylglucosamine 98.7 1.1E-06 3.9E-11 87.4 20.4 162 77-320 10-173 (723)
79 1hz4_A MALT regulatory protein 98.7 6.7E-06 2.3E-10 75.5 24.3 269 84-395 22-321 (373)
80 3mv2_B Coatomer subunit epsilo 98.7 4.2E-06 1.4E-10 73.4 21.1 214 48-321 52-282 (310)
81 4e6h_A MRNA 3'-END-processing 98.7 1.1E-05 3.8E-10 79.5 26.5 136 38-174 63-222 (679)
82 4i17_A Hypothetical protein; T 98.7 4.6E-06 1.6E-10 70.7 20.9 150 39-192 5-164 (228)
83 4gyw_A UDP-N-acetylglucosamine 98.7 2E-06 6.8E-11 85.7 20.6 163 40-210 8-172 (723)
84 4i17_A Hypothetical protein; T 98.6 5.8E-06 2E-10 70.1 20.5 210 75-372 6-220 (228)
85 3mv2_B Coatomer subunit epsilo 98.6 3.9E-06 1.3E-10 73.6 19.0 192 60-293 85-287 (310)
86 3e4b_A ALGK; tetratricopeptide 98.6 8.1E-07 2.8E-11 84.1 15.6 121 47-177 9-140 (452)
87 3e4b_A ALGK; tetratricopeptide 98.6 2.8E-05 9.6E-10 73.4 25.7 302 40-402 68-393 (452)
88 2fo7_A Synthetic consensus TPR 98.6 4E-06 1.4E-10 64.0 16.6 94 79-174 4-97 (136)
89 3q15_A PSP28, response regulat 98.6 1E-05 3.4E-10 74.6 22.1 231 50-320 110-364 (378)
90 1qqe_A Vesicular transport pro 98.4 1.3E-05 4.3E-10 71.0 17.4 211 56-319 32-267 (292)
91 1qqe_A Vesicular transport pro 98.4 8.8E-06 3E-10 72.0 15.4 167 42-210 38-226 (292)
92 3urz_A Uncharacterized protein 98.4 1.7E-05 5.8E-10 66.2 16.2 77 115-193 58-134 (208)
93 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.4E-05 8.2E-10 65.3 16.7 129 43-176 8-151 (213)
94 4e6h_A MRNA 3'-END-processing 98.3 0.00028 9.5E-09 69.6 25.8 247 42-335 303-582 (679)
95 3dra_A Protein farnesyltransfe 98.3 0.0006 2E-08 60.2 24.8 241 49-334 40-300 (306)
96 2r5s_A Uncharacterized protein 98.3 1.8E-05 6.3E-10 64.0 13.8 161 115-320 10-172 (176)
97 3qky_A Outer membrane assembly 98.3 6.6E-05 2.3E-09 65.0 18.1 170 39-212 13-224 (261)
98 3qky_A Outer membrane assembly 98.3 6.4E-05 2.2E-09 65.1 17.9 60 262-321 153-224 (261)
99 3qou_A Protein YBBN; thioredox 98.3 4.3E-05 1.5E-09 67.4 16.8 168 108-320 114-283 (287)
100 1na0_A Designed protein CTPR3; 98.3 3.7E-05 1.3E-09 57.5 14.3 96 42-139 10-105 (125)
101 3urz_A Uncharacterized protein 98.3 0.00012 4.2E-09 60.9 18.7 138 151-335 59-198 (208)
102 2pzi_A Probable serine/threoni 98.2 3.3E-05 1.1E-09 77.0 16.8 173 87-307 402-583 (681)
103 1na0_A Designed protein CTPR3; 98.2 7.2E-05 2.5E-09 55.9 14.8 99 76-176 9-107 (125)
104 3qou_A Protein YBBN; thioredox 98.2 6.3E-05 2.1E-09 66.3 16.0 174 29-208 105-280 (287)
105 1a17_A Serine/threonine protei 98.2 7.6E-05 2.6E-09 59.2 15.1 130 41-173 13-144 (166)
106 3rjv_A Putative SEL1 repeat pr 98.2 0.00031 1.1E-08 58.7 19.3 180 94-323 4-199 (212)
107 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00031 1.1E-08 59.2 19.2 56 264-321 154-213 (225)
108 2ifu_A Gamma-SNAP; membrane fu 98.1 8.7E-05 3E-09 66.1 16.2 119 54-173 4-142 (307)
109 3u3w_A Transcriptional activat 98.1 0.00079 2.7E-08 59.3 22.3 163 37-210 42-223 (293)
110 2vsy_A XCC0866; transferase, g 98.1 9.1E-05 3.1E-09 72.2 17.5 152 54-211 2-156 (568)
111 2vyi_A SGTA protein; chaperone 98.1 9.8E-05 3.3E-09 55.7 14.3 119 40-161 11-129 (131)
112 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00015 5.2E-09 61.2 16.7 166 40-213 3-214 (225)
113 2uy1_A Cleavage stimulation fa 98.1 0.00099 3.4E-08 63.4 23.8 101 37-140 11-118 (493)
114 2pzi_A Probable serine/threoni 98.1 6.8E-05 2.3E-09 74.7 16.2 152 52-210 402-561 (681)
115 2lni_A Stress-induced-phosphop 98.1 0.00012 4.1E-09 55.5 14.3 119 38-159 13-131 (133)
116 3u3w_A Transcriptional activat 98.1 0.0003 1E-08 62.1 18.2 164 46-210 80-264 (293)
117 2r5s_A Uncharacterized protein 98.1 5.4E-05 1.8E-09 61.2 12.2 161 43-210 8-171 (176)
118 2vsy_A XCC0866; transferase, g 98.1 0.00013 4.3E-09 71.2 17.0 154 89-287 2-158 (568)
119 4ga2_A E3 SUMO-protein ligase 98.1 4.7E-05 1.6E-09 59.8 11.3 138 51-195 7-148 (150)
120 2ifu_A Gamma-SNAP; membrane fu 98.0 0.0003 1E-08 62.6 17.6 194 89-319 4-222 (307)
121 2qfc_A PLCR protein; TPR, HTH, 98.0 0.0018 6E-08 57.0 22.0 191 12-211 18-224 (293)
122 2lni_A Stress-induced-phosphop 98.0 0.00018 6.1E-09 54.5 13.4 100 74-175 14-113 (133)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.0 0.00061 2.1E-08 56.6 17.6 92 79-175 9-100 (213)
124 2qfc_A PLCR protein; TPR, HTH, 98.0 0.0011 3.9E-08 58.2 20.0 167 41-209 75-263 (293)
125 2vyi_A SGTA protein; chaperone 98.0 0.00034 1.2E-08 52.5 14.4 119 75-196 11-129 (131)
126 3rjv_A Putative SEL1 repeat pr 98.0 0.0027 9.2E-08 52.8 21.1 166 39-213 16-198 (212)
127 4ga2_A E3 SUMO-protein ligase 97.9 9.8E-05 3.3E-09 57.9 11.2 122 85-211 6-128 (150)
128 3gyz_A Chaperone protein IPGC; 97.9 0.00012 3.9E-09 57.5 11.5 98 77-176 37-134 (151)
129 2e2e_A Formate-dependent nitri 97.9 7.2E-05 2.4E-09 60.4 10.5 122 52-176 21-145 (177)
130 4gco_A Protein STI-1; structur 97.9 0.00035 1.2E-08 52.8 13.7 96 78-175 15-110 (126)
131 1p5q_A FKBP52, FK506-binding p 97.9 0.00021 7.2E-09 64.5 14.6 128 41-172 147-291 (336)
132 3q7a_A Farnesyltransferase alp 97.9 0.008 2.7E-07 53.7 23.7 233 44-321 57-331 (349)
133 2c2l_A CHIP, carboxy terminus 97.9 0.00014 4.7E-09 63.9 12.3 99 75-175 3-101 (281)
134 1elw_A TPR1-domain of HOP; HOP 97.8 0.00074 2.5E-08 49.5 14.2 95 78-174 6-100 (118)
135 3dra_A Protein farnesyltransfe 97.8 0.013 4.6E-07 51.5 24.4 224 86-358 43-286 (306)
136 3gw4_A Uncharacterized protein 97.8 0.00042 1.4E-08 56.9 14.1 63 111-173 26-93 (203)
137 2uy1_A Cleavage stimulation fa 97.8 0.008 2.7E-07 57.1 24.2 345 28-395 32-412 (493)
138 1elw_A TPR1-domain of HOP; HOP 97.8 0.0008 2.7E-08 49.4 14.0 100 40-141 3-102 (118)
139 3gw4_A Uncharacterized protein 97.8 0.00025 8.6E-09 58.3 12.2 157 52-211 3-175 (203)
140 1a17_A Serine/threonine protei 97.8 0.0014 4.9E-08 51.6 16.4 96 78-175 15-110 (166)
141 1elr_A TPR2A-domain of HOP; HO 97.8 0.00021 7.2E-09 53.8 10.8 96 79-175 7-108 (131)
142 3gyz_A Chaperone protein IPGC; 97.8 0.00028 9.7E-09 55.2 11.5 104 40-147 35-138 (151)
143 4gco_A Protein STI-1; structur 97.8 0.00056 1.9E-08 51.6 12.9 106 42-151 14-120 (126)
144 2kck_A TPR repeat; tetratricop 97.8 0.00025 8.6E-09 51.7 10.7 96 42-139 7-105 (112)
145 3q49_B STIP1 homology and U bo 97.8 0.00054 1.8E-08 52.3 13.0 98 75-174 8-105 (137)
146 2vgx_A Chaperone SYCD; alterna 97.8 0.00031 1.1E-08 54.8 11.6 96 78-175 23-118 (148)
147 2kck_A TPR repeat; tetratricop 97.8 0.00039 1.3E-08 50.6 11.6 99 76-176 6-107 (112)
148 2dba_A Smooth muscle cell asso 97.8 0.0017 5.7E-08 50.0 15.6 97 40-139 27-127 (148)
149 3upv_A Heat shock protein STI1 97.8 0.00085 2.9E-08 50.4 13.4 96 78-175 6-101 (126)
150 2xcb_A PCRH, regulatory protei 97.7 0.00041 1.4E-08 53.6 11.7 94 79-174 21-114 (142)
151 1elr_A TPR2A-domain of HOP; HO 97.7 0.00068 2.3E-08 50.9 12.6 112 41-155 4-121 (131)
152 2vgx_A Chaperone SYCD; alterna 97.7 0.0011 3.6E-08 51.7 13.6 99 40-140 20-118 (148)
153 3sz7_A HSC70 cochaperone (SGT) 97.7 0.0013 4.4E-08 52.1 14.2 99 75-175 10-108 (164)
154 4gcn_A Protein STI-1; structur 97.7 0.00076 2.6E-08 51.0 12.0 104 78-184 10-119 (127)
155 2dba_A Smooth muscle cell asso 97.7 0.0015 5E-08 50.4 14.0 109 74-187 26-139 (148)
156 2e2e_A Formate-dependent nitri 97.7 0.00076 2.6E-08 54.2 12.7 122 86-212 20-144 (177)
157 2fbn_A 70 kDa peptidylprolyl i 97.6 0.001 3.4E-08 54.7 13.4 124 41-166 38-176 (198)
158 3q49_B STIP1 homology and U bo 97.6 0.0012 4.1E-08 50.2 13.0 100 38-139 6-105 (137)
159 3upv_A Heat shock protein STI1 97.6 0.0018 6.1E-08 48.6 13.6 98 41-140 4-101 (126)
160 2xcb_A PCRH, regulatory protei 97.6 0.00077 2.6E-08 52.0 11.7 99 40-140 17-115 (142)
161 3ro3_A PINS homolog, G-protein 97.6 0.0005 1.7E-08 53.8 10.3 134 41-174 9-157 (164)
162 3k9i_A BH0479 protein; putativ 97.6 0.00021 7.2E-09 53.1 7.4 103 89-192 3-108 (117)
163 4f3v_A ESX-1 secretion system 97.6 0.0011 3.9E-08 57.2 12.8 138 45-187 106-247 (282)
164 2c2l_A CHIP, carboxy terminus 97.6 0.0015 5E-08 57.2 13.8 98 110-211 3-100 (281)
165 1p5q_A FKBP52, FK506-binding p 97.6 0.0027 9.2E-08 57.1 15.8 98 111-211 147-258 (336)
166 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0019 6.6E-08 51.1 13.2 100 39-140 9-108 (164)
167 1wao_1 Serine/threonine protei 97.5 0.0012 4E-08 62.7 13.4 160 49-211 14-196 (477)
168 4b4t_Q 26S proteasome regulato 97.5 0.018 6.1E-07 53.5 21.5 199 120-357 13-243 (434)
169 4f3v_A ESX-1 secretion system 97.5 0.0062 2.1E-07 52.6 15.8 199 88-335 18-249 (282)
170 2xev_A YBGF; tetratricopeptide 97.4 0.0026 9E-08 47.7 12.2 87 49-139 10-104 (129)
171 1hxi_A PEX5, peroxisome target 97.4 0.0012 4E-08 49.4 9.9 94 44-139 20-113 (121)
172 4b4t_Q 26S proteasome regulato 97.4 0.0079 2.7E-07 55.9 17.5 64 257-320 175-244 (434)
173 4gcn_A Protein STI-1; structur 97.4 0.002 7E-08 48.5 10.7 107 42-151 9-121 (127)
174 3k9i_A BH0479 protein; putativ 97.4 0.00039 1.3E-08 51.6 6.5 104 53-157 2-108 (117)
175 2xev_A YBGF; tetratricopeptide 97.4 0.0022 7.7E-08 48.1 10.9 91 82-176 8-106 (129)
176 1hxi_A PEX5, peroxisome target 97.3 0.0018 6.3E-08 48.3 10.0 95 79-175 20-114 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0038 1.3E-07 58.9 12.7 122 41-166 268-405 (457)
178 2fbn_A 70 kDa peptidylprolyl i 97.2 0.014 4.8E-07 47.7 14.6 126 48-175 11-151 (198)
179 3n71_A Histone lysine methyltr 97.1 0.003 1E-07 59.8 11.4 124 51-174 319-463 (490)
180 3q7a_A Farnesyltransferase alp 97.1 0.13 4.4E-06 45.9 22.0 175 88-307 66-257 (349)
181 1klx_A Cysteine rich protein B 97.1 0.033 1.1E-06 42.5 15.0 113 54-177 8-128 (138)
182 3ro3_A PINS homolog, G-protein 97.1 0.0067 2.3E-07 47.1 11.2 62 113-174 11-77 (164)
183 3rkv_A Putative peptidylprolyl 97.0 0.0087 3E-07 47.1 11.5 64 111-175 63-126 (162)
184 1ihg_A Cyclophilin 40; ppiase 96.9 0.0096 3.3E-07 54.3 12.0 64 111-175 273-336 (370)
185 2l6j_A TPR repeat-containing p 96.8 0.0078 2.7E-07 43.5 9.3 64 76-140 4-67 (111)
186 2kat_A Uncharacterized protein 96.8 0.011 3.8E-07 43.2 9.9 79 94-174 3-81 (115)
187 2hr2_A Hypothetical protein; a 96.8 0.043 1.5E-06 42.7 13.3 103 84-188 19-149 (159)
188 1wao_1 Serine/threonine protei 96.8 0.0071 2.4E-07 57.3 10.7 90 85-176 15-104 (477)
189 2if4_A ATFKBP42; FKBP-like, al 96.8 0.0051 1.8E-07 55.3 9.3 113 42-174 180-292 (338)
190 3rkv_A Putative peptidylprolyl 96.7 0.054 1.8E-06 42.4 13.8 103 41-146 11-130 (162)
191 3n71_A Histone lysine methyltr 96.7 0.023 7.9E-07 53.7 13.1 89 86-174 319-421 (490)
192 1ihg_A Cyclophilin 40; ppiase 96.6 0.023 7.9E-07 51.7 12.3 123 41-166 223-361 (370)
193 3dss_A Geranylgeranyl transfer 96.5 0.4 1.4E-05 42.5 22.9 150 39-193 24-191 (331)
194 2if4_A ATFKBP42; FKBP-like, al 96.5 0.01 3.6E-07 53.3 9.4 112 79-212 182-293 (338)
195 1kt0_A FKBP51, 51 kDa FK506-bi 96.5 0.044 1.5E-06 51.5 13.8 61 147-210 318-378 (457)
196 2l6j_A TPR repeat-containing p 96.4 0.0045 1.5E-07 44.8 5.2 94 39-135 2-102 (111)
197 1na3_A Designed protein CTPR2; 96.4 0.04 1.4E-06 37.8 9.8 25 113-137 45-69 (91)
198 2hr2_A Hypothetical protein; a 96.3 0.063 2.2E-06 41.8 11.2 95 43-139 13-130 (159)
199 1na3_A Designed protein CTPR2; 96.2 0.064 2.2E-06 36.7 10.3 80 110-191 8-87 (91)
200 2kat_A Uncharacterized protein 96.2 0.035 1.2E-06 40.5 9.1 79 59-139 3-81 (115)
201 3ma5_A Tetratricopeptide repea 96.1 0.031 1.1E-06 39.7 8.4 64 110-174 6-69 (100)
202 3ma5_A Tetratricopeptide repea 95.9 0.032 1.1E-06 39.6 7.7 64 75-139 6-69 (100)
203 1klx_A Cysteine rich protein B 95.9 0.11 3.8E-06 39.4 11.0 116 271-399 9-129 (138)
204 1wy6_A Hypothetical protein ST 95.7 0.44 1.5E-05 35.5 12.9 69 255-324 89-157 (172)
205 3ly7_A Transcriptional activat 95.7 0.78 2.7E-05 41.1 16.8 151 32-188 185-350 (372)
206 3qww_A SET and MYND domain-con 95.5 0.057 1.9E-06 50.1 9.3 87 88-174 310-410 (433)
207 1dce_A Protein (RAB geranylger 95.4 1 3.5E-05 43.4 18.3 127 57-188 45-185 (567)
208 3dss_A Geranylgeranyl transfer 95.4 1.3 4.5E-05 39.2 23.0 222 88-359 41-304 (331)
209 3qwp_A SET and MYND domain-con 95.4 0.086 2.9E-06 48.9 10.2 92 83-174 294-399 (429)
210 1zu2_A Mitochondrial import re 95.3 0.065 2.2E-06 41.6 7.5 70 52-124 13-93 (158)
211 3qww_A SET and MYND domain-con 95.0 0.084 2.9E-06 49.0 8.8 87 53-139 310-410 (433)
212 3qwp_A SET and MYND domain-con 95.0 0.086 2.9E-06 48.9 8.8 93 46-138 292-398 (429)
213 1zu2_A Mitochondrial import re 94.9 0.059 2E-06 41.9 6.4 101 87-192 13-135 (158)
214 3mkq_B Coatomer subunit alpha; 94.8 0.99 3.4E-05 35.6 13.1 104 48-172 12-115 (177)
215 1dce_A Protein (RAB geranylger 94.8 1.9 6.3E-05 41.6 18.0 99 57-158 89-190 (567)
216 3mkq_A Coatomer beta'-subunit; 94.8 0.81 2.8E-05 46.2 16.3 102 49-174 607-709 (814)
217 3ly7_A Transcriptional activat 94.0 3.2 0.00011 37.1 16.3 78 254-335 274-351 (372)
218 1wy6_A Hypothetical protein ST 93.8 1.5 5.1E-05 32.7 12.6 122 53-178 19-157 (172)
219 1pc2_A Mitochondria fission pr 93.6 1.2 4.2E-05 34.1 11.1 83 91-175 13-100 (152)
220 1pc2_A Mitochondria fission pr 93.4 0.71 2.4E-05 35.4 9.5 86 56-145 13-103 (152)
221 3mkq_A Coatomer beta'-subunit; 93.3 0.53 1.8E-05 47.5 11.6 134 43-211 631-764 (814)
222 2kc7_A BFR218_protein; tetratr 93.3 0.31 1.1E-05 33.9 7.2 53 121-174 10-63 (99)
223 1v54_E Cytochrome C oxidase po 93.1 1.3 4.4E-05 31.0 9.3 72 263-335 15-87 (109)
224 2kc7_A BFR218_protein; tetratr 92.5 1.1 3.8E-05 30.9 9.1 58 83-141 7-65 (99)
225 3bee_A Putative YFRE protein; 92.0 1.7 5.9E-05 30.0 9.4 48 92-140 25-72 (93)
226 2v5f_A Prolyl 4-hydroxylase su 91.9 1.2 4.3E-05 31.4 8.8 66 110-175 4-75 (104)
227 3u64_A Protein TP_0956; tetrat 91.5 2.3 7.9E-05 36.5 11.2 94 92-187 179-283 (301)
228 2y69_E Cytochrome C oxidase su 91.2 2.4 8.2E-05 31.4 9.3 72 263-335 58-130 (152)
229 3mkq_B Coatomer subunit alpha; 91.1 4.6 0.00016 31.7 14.5 101 84-207 13-113 (177)
230 3bee_A Putative YFRE protein; 90.8 2.1 7.3E-05 29.6 8.8 68 108-176 3-73 (93)
231 2v5f_A Prolyl 4-hydroxylase su 90.7 1.6 5.3E-05 30.9 8.3 65 75-139 4-74 (104)
232 4h7y_A Dual specificity protei 88.7 3.5 0.00012 31.4 8.8 36 39-75 11-52 (161)
233 2ff4_A Probable regulatory pro 88.4 2.1 7.3E-05 38.9 9.3 116 75-191 111-255 (388)
234 4b4t_P 26S proteasome regulato 88.4 16 0.00053 33.9 17.1 120 55-174 30-165 (445)
235 3u64_A Protein TP_0956; tetrat 87.9 5.1 0.00017 34.5 10.4 111 40-154 153-285 (301)
236 2ff4_A Probable regulatory pro 87.7 2.3 7.9E-05 38.7 9.0 74 259-333 173-251 (388)
237 4gns_B Protein CSD3, chitin bi 87.7 3.7 0.00013 40.7 10.9 124 46-173 253-398 (754)
238 1nzn_A CGI-135 protein, fissio 87.3 5.2 0.00018 29.4 8.9 20 120-139 83-102 (126)
239 4gns_B Protein CSD3, chitin bi 87.1 4.6 0.00016 40.1 11.1 54 264-319 344-398 (754)
240 1v54_E Cytochrome C oxidase po 86.7 6.4 0.00022 27.5 8.9 44 95-138 29-72 (109)
241 4b4t_P 26S proteasome regulato 83.9 27 0.00091 32.3 15.3 61 260-320 140-205 (445)
242 2y69_E Cytochrome C oxidase su 83.5 12 0.0004 27.8 9.2 59 129-188 71-129 (152)
243 4h7y_A Dual specificity protei 82.9 8.4 0.00029 29.4 8.3 113 75-190 12-137 (161)
244 1zbp_A Hypothetical protein VP 78.3 26 0.0009 29.6 10.8 117 265-395 5-128 (273)
245 1nzn_A CGI-135 protein, fissio 77.9 18 0.00062 26.5 9.4 83 91-175 16-103 (126)
246 2p58_C Putative type III secre 77.3 11 0.00037 26.3 6.6 77 272-360 22-99 (116)
247 4fhn_B Nucleoporin NUP120; pro 75.4 75 0.0026 33.5 15.9 163 258-424 900-1087(1139)
248 1wdy_A 2-5A-dependent ribonucl 73.1 3.1 0.00011 35.3 4.2 117 46-180 7-132 (285)
249 4b4t_R RPN7, 26S proteasome re 72.8 36 0.0012 31.2 11.5 63 112-174 132-196 (429)
250 2uwj_G Type III export protein 72.1 10 0.00035 26.4 5.5 77 272-360 21-98 (115)
251 1wdy_A 2-5A-dependent ribonucl 69.6 3.9 0.00013 34.7 4.0 17 82-98 8-24 (285)
252 3kea_A K1L; tropism, ANK repea 64.5 13 0.00046 31.7 6.4 113 48-177 35-153 (285)
253 4fhn_B Nucleoporin NUP120; pro 63.9 1.5E+02 0.0051 31.2 17.7 142 46-195 817-985 (1139)
254 2uwj_G Type III export protein 63.3 35 0.0012 23.8 7.5 84 55-149 20-105 (115)
255 2p58_C Putative type III secre 62.3 37 0.0013 23.7 8.2 77 55-141 21-99 (116)
256 1k1a_A B-cell lymphoma 3-encod 62.0 7.4 0.00025 32.0 4.2 125 47-180 12-143 (241)
257 2ion_A PDCD4, programmed cell 60.7 53 0.0018 25.0 8.6 66 44-110 12-79 (152)
258 3jxi_A Vanilloid receptor-rela 60.3 8.4 0.00029 32.2 4.3 200 153-395 9-250 (260)
259 4fke_A Aminopeptidase N; zinc 59.5 1.6E+02 0.0055 30.1 15.0 158 149-354 689-859 (909)
260 2zu6_B Programmed cell death p 59.3 72 0.0025 27.6 9.9 64 149-213 169-232 (307)
261 3ffl_A Anaphase-promoting comp 59.1 51 0.0018 25.5 7.9 28 146-173 122-149 (167)
262 1qsa_A Protein (soluble lytic 57.8 1.4E+02 0.0048 28.9 21.2 320 43-395 9-347 (618)
263 4b4t_R RPN7, 26S proteasome re 56.7 53 0.0018 30.1 9.2 99 259-357 133-235 (429)
264 1zbp_A Hypothetical protein VP 55.6 47 0.0016 28.1 7.7 51 87-138 8-58 (273)
265 2fu4_A Ferric uptake regulatio 55.4 40 0.0014 22.1 6.2 62 354-418 6-68 (83)
266 1k1a_A B-cell lymphoma 3-encod 54.3 12 0.0004 30.7 4.1 47 83-129 13-61 (241)
267 3lvg_A Clathrin heavy chain 1; 54.0 0.57 2E-05 43.4 -4.3 234 110-392 82-316 (624)
268 4ady_A RPN2, 26S proteasome re 53.5 2E+02 0.0069 29.4 18.7 27 43-69 232-258 (963)
269 3twr_A Tankyrase-2; ankyrin re 52.6 15 0.00051 28.0 4.2 18 48-65 12-29 (165)
270 2d2s_A Exocyst complex compone 51.6 68 0.0023 26.5 8.2 23 47-69 24-46 (235)
271 3o48_A Mitochondria fission 1 51.4 71 0.0024 23.6 7.4 51 347-403 60-112 (134)
272 2nsz_A Programmed cell death p 51.3 69 0.0024 23.4 9.9 68 44-112 10-79 (129)
273 3eiq_C Programmed cell death p 50.9 1.3E+02 0.0046 26.6 11.5 66 259-325 219-286 (358)
274 3rjo_A Endoplasmic reticulum a 49.8 1.5E+02 0.0051 26.9 22.7 157 148-355 199-369 (419)
275 3o48_A Mitochondria fission 1 49.6 76 0.0026 23.5 9.5 48 92-139 59-106 (134)
276 2zhj_A Annexin A4; zynogen gra 49.2 1.3E+02 0.0046 26.1 10.8 116 274-397 176-297 (322)
277 3eu9_A Huntingtin-interacting 46.6 16 0.00056 29.7 3.8 114 49-179 14-135 (240)
278 3jxi_A Vanilloid receptor-rela 45.6 19 0.00067 29.9 4.2 58 47-104 8-74 (260)
279 1ug3_A EIF4GI, eukaryotic prot 45.4 1.6E+02 0.0054 25.9 14.0 66 44-110 14-80 (339)
280 2xig_A Ferric uptake regulatio 45.3 96 0.0033 23.3 8.3 63 133-196 14-76 (150)
281 2d2s_A Exocyst complex compone 44.9 74 0.0025 26.3 7.4 90 82-174 24-119 (235)
282 2fe3_A Peroxide operon regulat 44.5 96 0.0033 23.1 8.1 62 134-196 10-71 (145)
283 2fe3_A Peroxide operon regulat 43.2 79 0.0027 23.6 6.8 63 353-418 10-72 (145)
284 2etb_A Transient receptor pote 42.7 42 0.0014 27.7 5.8 57 152-210 5-70 (256)
285 4a1g_A Mitotic checkpoint seri 42.5 85 0.0029 23.8 6.7 51 130-180 84-135 (152)
286 3eyy_A Putative iron uptake re 42.3 90 0.0031 23.3 7.0 62 133-196 6-67 (145)
287 3esl_A Checkpoint serine/threo 41.9 1.3E+02 0.0045 24.0 9.2 55 90-144 93-148 (202)
288 1mzb_A Ferric uptake regulatio 41.8 1E+02 0.0035 22.7 7.3 60 136-196 8-68 (136)
289 1mzb_A Ferric uptake regulatio 41.5 67 0.0023 23.7 6.1 61 355-418 8-69 (136)
290 2nsz_A Programmed cell death p 40.8 1E+02 0.0036 22.5 7.8 64 114-178 10-75 (129)
291 2xig_A Ferric uptake regulatio 39.9 67 0.0023 24.2 6.0 64 352-418 14-77 (150)
292 1ug3_A EIF4GI, eukaryotic prot 39.9 32 0.0011 30.4 4.7 25 258-282 142-166 (339)
293 3esl_A Checkpoint serine/threo 39.2 1.5E+02 0.0051 23.8 9.1 74 107-180 73-149 (202)
294 2ion_A PDCD4, programmed cell 39.1 88 0.003 23.7 6.4 64 114-178 12-77 (152)
295 4ady_A RPN2, 26S proteasome re 38.7 3.4E+02 0.012 27.8 24.8 148 263-417 566-721 (963)
296 2wvi_A Mitotic checkpoint seri 38.6 1.3E+02 0.0046 23.1 8.4 51 130-180 79-130 (164)
297 3t8k_A Uncharacterized protein 38.2 35 0.0012 26.8 4.3 155 49-210 11-178 (186)
298 3l6a_A Eukaryotic translation 38.0 56 0.0019 29.1 6.0 77 44-124 15-96 (364)
299 4a1g_A Mitotic checkpoint seri 37.8 1.3E+02 0.0043 22.9 7.0 52 275-326 83-135 (152)
300 1y8m_A FIS1; mitochondria, unk 37.6 1.3E+02 0.0044 22.6 11.5 48 92-139 58-105 (144)
301 2w57_A Ferric uptake regulatio 37.6 91 0.0031 23.5 6.4 62 354-418 6-68 (150)
302 3t8k_A Uncharacterized protein 37.6 69 0.0024 25.0 6.0 24 156-179 45-68 (186)
303 2w57_A Ferric uptake regulatio 37.5 1.2E+02 0.004 22.8 7.0 62 134-196 5-67 (150)
304 3kea_A K1L; tropism, ANK repea 36.5 8.8 0.0003 32.9 0.5 47 84-134 36-82 (285)
305 2fu4_A Ferric uptake regulatio 36.2 88 0.003 20.3 7.5 58 67-125 8-66 (83)
306 2keb_A DNA polymerase subunit 36.1 1.1E+02 0.0036 21.2 6.3 58 275-334 27-89 (101)
307 3aji_A 26S proteasome non-ATPa 35.3 30 0.001 28.0 3.6 21 47-67 9-29 (231)
308 4ets_A Ferric uptake regulatio 33.9 1.5E+02 0.0052 22.6 7.2 68 128-196 14-84 (162)
309 3ljn_A Hypothetical protein; a 33.7 18 0.00063 32.0 2.2 98 39-145 16-115 (364)
310 3ltj_A Alpharep-4; protein eng 33.3 1.7E+02 0.0058 22.7 17.5 153 28-196 15-167 (201)
311 2qx5_A Nucleoporin NIC96; mRNA 32.7 3E+02 0.01 26.9 10.4 84 297-394 299-383 (661)
312 3eyy_A Putative iron uptake re 32.5 96 0.0033 23.2 5.7 62 99-162 7-68 (145)
313 2etb_A Transient receptor pote 32.3 39 0.0013 27.9 3.9 58 47-104 5-71 (256)
314 2wvi_A Mitotic checkpoint seri 31.5 1.7E+02 0.0058 22.5 6.9 54 275-328 78-132 (164)
315 2keb_A DNA polymerase subunit 31.4 1.3E+02 0.0044 20.8 7.0 31 130-160 28-58 (101)
316 4fke_A Aminopeptidase N; zinc 31.2 4.4E+02 0.015 26.9 12.9 46 90-138 740-785 (909)
317 2pnn_A Transient receptor pote 30.9 88 0.003 26.0 6.0 86 299-391 152-254 (273)
318 4ets_A Ferric uptake regulatio 30.0 1.2E+02 0.0042 23.1 6.0 62 354-418 22-85 (162)
319 2rg8_A Programmed cell death p 29.9 1.4E+02 0.0048 22.9 6.3 24 45-68 14-37 (165)
320 2o03_A Probable zinc uptake re 28.8 1.4E+02 0.0047 21.7 6.0 47 150-196 14-60 (131)
321 1yii_A Annexin A5, annexin V, 28.3 2.9E+02 0.01 23.9 15.1 274 93-416 18-318 (320)
322 3lpz_A GET4 (YOR164C homolog); 28.1 3.1E+02 0.01 24.0 19.4 91 97-191 80-177 (336)
323 3lpz_A GET4 (YOR164C homolog); 28.1 3.1E+02 0.01 24.0 19.6 142 113-307 37-182 (336)
324 3qye_A TBC1 domain family memb 27.9 2.8E+02 0.0094 24.0 8.8 129 55-190 163-303 (331)
325 3mwm_A ZUR, putative metal upt 27.9 1.1E+02 0.0037 22.7 5.3 40 379-418 25-64 (139)
326 3pvs_A Replication-associated 27.8 3.5E+02 0.012 24.7 10.7 118 91-210 166-319 (447)
327 1y8m_A FIS1; mitochondria, unk 27.4 2E+02 0.0067 21.6 10.2 76 324-404 36-112 (144)
328 1lsh_A Lipovitellin (LV-1N, LV 25.8 5.8E+02 0.02 26.5 19.7 58 44-107 313-370 (1056)
329 3dfg_A Xcrecx, regulatory prot 25.7 2.2E+02 0.0076 21.6 12.0 131 41-196 17-147 (162)
330 2b7e_A PRE-mRNA processing pro 25.5 43 0.0015 20.6 2.1 27 129-156 4-31 (59)
331 3eiq_C Programmed cell death p 25.5 2E+02 0.0068 25.5 7.2 24 80-103 221-244 (358)
332 3ltj_A Alpharep-4; protein eng 25.1 2.4E+02 0.0081 21.8 18.8 80 109-196 57-136 (201)
333 2zu6_B Programmed cell death p 24.7 2.8E+02 0.0094 23.9 7.9 64 45-109 170-235 (307)
334 2r9g_A AAA ATPase, central reg 24.5 2.7E+02 0.0092 22.2 9.9 17 55-71 28-44 (204)
335 2o03_A Probable zinc uptake re 24.3 1.2E+02 0.0041 22.1 4.9 40 379-418 22-61 (131)
336 3ltm_A Alpha-REP4; protein eng 24.3 2.5E+02 0.0087 21.9 17.9 143 38-196 30-172 (211)
337 3rjo_A Endoplasmic reticulum a 24.2 4E+02 0.014 24.0 15.2 27 113-139 269-295 (419)
338 3hra_A Ankyrin repeat family p 24.1 66 0.0022 25.1 3.7 14 52-65 13-26 (201)
339 2ijq_A Hypothetical protein; s 24.0 2.4E+02 0.0083 21.5 8.0 61 260-321 36-104 (161)
340 3mwm_A ZUR, putative metal upt 23.8 1.3E+02 0.0043 22.3 5.0 58 138-196 6-63 (139)
341 1w3w_A Annexin A8; coagulation 23.6 3.6E+02 0.012 23.4 16.0 273 93-418 25-327 (327)
342 2dod_A Transcription elongatio 23.3 70 0.0024 21.3 3.0 29 384-413 17-46 (82)
343 4aez_C MAD3, mitotic spindle c 23.0 2.2E+02 0.0074 23.2 6.4 50 276-325 133-183 (223)
344 2ijq_A Hypothetical protein; s 22.8 2.6E+02 0.0089 21.4 7.0 16 55-70 46-61 (161)
345 3hra_A Ankyrin repeat family p 22.8 64 0.0022 25.1 3.4 14 122-135 13-26 (201)
346 1axn_A Annexin III; annexin fa 21.9 3.9E+02 0.013 23.1 13.4 117 274-398 177-299 (323)
347 3ltm_A Alpha-REP4; protein eng 21.7 2.9E+02 0.0098 21.5 19.0 111 74-196 31-141 (211)
348 2yru_A Steroid receptor RNA ac 21.2 2.3E+02 0.008 20.3 8.5 44 132-175 47-90 (118)
349 3f6q_A Integrin-linked protein 21.2 1.3E+02 0.0045 22.8 4.9 18 49-66 10-27 (179)
350 3ljn_A Hypothetical protein; a 21.0 1.8E+02 0.0062 25.3 6.4 113 264-392 142-266 (364)
351 2qq8_A TBC1 domain family memb 21.0 2.8E+02 0.0096 24.1 7.4 45 278-322 214-258 (334)
352 3ffl_A Anaphase-promoting comp 20.9 2.9E+02 0.01 21.3 8.8 98 43-140 22-151 (167)
353 4g8k_A 2-5A-dependent ribonucl 20.4 1.2E+02 0.0042 26.1 5.1 124 48-183 172-303 (337)
354 3se6_A Endoplasmic reticulum a 20.2 7.2E+02 0.025 25.6 19.3 157 149-356 751-921 (967)
355 3txn_A 26S proteasome regulato 20.0 4.8E+02 0.016 23.4 17.5 94 262-355 104-206 (394)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-33 Score=266.87 Aligned_cols=202 Identities=13% Similarity=0.163 Sum_probs=173.6
Q ss_pred HHHHHhcCCCCCh-hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC---------hhHHHHH
Q 013323 29 AEEYARRNYANNA-SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR---------LQDTFFF 98 (445)
Q Consensus 29 ~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~ 98 (445)
..++.+++..+++ ..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++
T Consensus 13 ~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~l 92 (501)
T 4g26_A 13 SRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92 (501)
T ss_dssp -----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHH
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHH
Confidence 3455566665554 35888999999999999999999999999999999999999999987654 6789999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 99 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
|++|.+.|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.
T Consensus 93 f~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchh
Q 013323 179 LDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLT 258 (445)
Q Consensus 179 p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 258 (445)
||..||+++|.+|++.|+. +.|.++++.|...+. .|+..
T Consensus 173 Pd~~ty~~Li~~~~~~g~~--d~A~~ll~~Mr~~g~---------------------------------------~ps~~ 211 (501)
T 4g26_A 173 PEEPELAALLKVSMDTKNA--DKVYKTLQRLRDLVR---------------------------------------QVSKS 211 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTS---------------------------------------SBCHH
T ss_pred CCHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHhCC---------------------------------------CcCHH
Confidence 9999999999999999976 889999999887642 78889
Q ss_pred HHHHHHHHHHhcc
Q 013323 259 VYHVAFHACAELK 271 (445)
Q Consensus 259 ~~~~li~~~~~~g 271 (445)
||+.++..|+..+
T Consensus 212 T~~~l~~~F~s~~ 224 (501)
T 4g26_A 212 TFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHSHH
T ss_pred HHHHHHHHHhcCc
Confidence 9999999888754
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9e-34 Score=270.76 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=162.3
Q ss_pred chHHHHHHhcCCCCChhhHHHHHHHHHhcCc---------HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHH
Q 013323 26 SAGAEEYARRNYANNASEYNTVVTSLTSQRR---------FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF 96 (445)
Q Consensus 26 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 96 (445)
..-..+|.++|++||.++||+||.+|++.+. ++.|.++|++|.+.|+.||..||++||++|++.|++++|.
T Consensus 46 ~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~ 125 (501)
T 4g26_A 46 LRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAF 125 (501)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3456789999999999999999999997654 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 97 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcc
Q 013323 177 AGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 177 ~~p~~~~~~~li~~~~~~ 194 (445)
+.|+..||+.++..|+..
T Consensus 206 ~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 206 RQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp SSBCHHHHHHHHHHHHSH
T ss_pred CCcCHHHHHHHHHHHhcC
Confidence 999999999999999764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.4e-27 Score=236.30 Aligned_cols=366 Identities=9% Similarity=-0.059 Sum_probs=276.8
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..+..+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 36889999999999999999999999999985 4689999999999999999999999999988653 5899999999
Q ss_pred HHHHHccCCHHHHHHHHHHH-HhC--------------CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHH
Q 013323 118 ISVCGKCKNSDQAIRIFEEM-KKY--------------EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF 182 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m-~~~--------------g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 182 (445)
+.+|.+.|++++|.++|+++ ... |..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhH
Confidence 99999999999999999953 222 33457899999999999999999999999999886421 222
Q ss_pred HHHHH--------------------------------------HHHHHccCCCchHHHHHHHHHHHHhcCCccccccccc
Q 013323 183 CYAGL--------------------------------------ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNN 224 (445)
Q Consensus 183 ~~~~l--------------------------------------i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 224 (445)
.+..+ +..|.+.|+. +.|.++++.+.... .........
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~~~~~~--~~~~~~~~l 311 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL--RRAEDYLSSINGLE--KSSDLLLCK 311 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH--HHHHHHHHTSTTGG--GCHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH--HHHHHHHHHhhcCC--chHHHHHHH
Confidence 22222 2333344433 56666666554321 000000000
Q ss_pred cchhh-cccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013323 225 AENEM-MGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303 (445)
Q Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 303 (445)
..... .+...++. ..... +.. ..+.+..+|+.++.++.+.|++++|..+++.+.+. .+.+..+++.+...|.
T Consensus 312 ~~~~~~~g~~~~A~-~~~~~---~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 312 ADTLFVRSRFIDVL-AITTK---ILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHTTCHHHHH-HHHHH---HHH--HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHH-HHHHH---HHH--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Confidence 00000 01111111 11000 000 01446778999999999999999999999998754 2457889999999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCC
Q 013323 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGG 382 (445)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~ 382 (445)
+.|++++|.++|+++.+.. ..+..+|+.++. .|.+.|+ ++|.++|+++.+.+ +.+..+|..+..+|. +.|+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~--~~g~ 456 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAH----SFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM--QLGN 456 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH----HHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH--HHTC
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH--HcCC
Confidence 9999999999999998752 236779999988 6788998 99999999998875 347788999988887 9999
Q ss_pred hhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhhhh
Q 013323 383 YTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVS 428 (445)
Q Consensus 383 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~ 428 (445)
+++|.++|++|.+.. ..+..+|..+...+.+.|..++|..++..+
T Consensus 457 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 457 ILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999998653 346889999999999999999988866554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.7e-27 Score=234.26 Aligned_cols=370 Identities=10% Similarity=-0.069 Sum_probs=263.8
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHH-HC-----------
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMK-AN----------- 105 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~----------- 105 (445)
.|+..+|+.+..+|.+.|++++|..+|+.+.. ..++..+++.++.++.+.|++++|.++|+++. ..
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 46667777777777777777777777776643 24667777777777777777777777777432 21
Q ss_pred ---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----------------------------------------
Q 013323 106 ---GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV---------------------------------------- 142 (445)
Q Consensus 106 ---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---------------------------------------- 142 (445)
|.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 2334567777777777777777777777776653221
Q ss_pred ------------------------------CccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 013323 143 ------------------------------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192 (445)
Q Consensus 143 ------------------------------~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 192 (445)
.++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++..+.
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence 2678889999999999999999999999998765 236777888888888
Q ss_pred ccCCCchHHHHHHHHHHHHhcCCccccccccccc-hhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcc
Q 013323 193 NKIPRADDTATKIIELVEQSKGWSSVETSGNNAE-NEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271 (445)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g 271 (445)
+.|+. +.+..+++.+........... ..... ....+...++. ....... ...+.+..+|+.++..|.+.|
T Consensus 351 ~~g~~--~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~-~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 351 ESGEK--NKLYLISNDLVDRHPEKAVTW-LAVGIYYLCVNKISEAR-RYFSKSS-----TMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHTCH--HHHHHHHHHHHHHCTTSHHHH-HHHHHHHHHTTCHHHHH-HHHHHHH-----HHCTTCHHHHHHHHHHHHHHT
T ss_pred HhCCH--HHHHHHHHHHHhhCcccHHHH-HHHHHHHHHhccHHHHH-HHHHHHH-----HhCCCCHHHHHHHHHHHHHcC
Confidence 88866 888888888765432111000 00000 00111111111 1110000 011456778999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQ 350 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~ 350 (445)
++++|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|.++|+.+.+.. ..+..+|+.+.. .|.+.|. ++|.
T Consensus 422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~----~~~~~g~~~~A~ 495 (597)
T 2xpi_A 422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGV----VAFNKSDMQTAI 495 (597)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH----HHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH----HHHHhCCHHHHH
Confidence 9999999999888653 3477889999999999999999999999988763 236788888888 5778888 9999
Q ss_pred HHHHHHHhC----CCCCC--cchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCch
Q 013323 351 DTLVNMNSR----NIFLS--PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRL 424 (445)
Q Consensus 351 ~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 424 (445)
++|+++.+. +..|+ ..+|..+..+|. +.|++++|.++|+++.+.+ +.+..+|..+...+.+.|..++|..+
T Consensus 496 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYR--KLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999998776 66677 568888888887 9999999999999988755 34788899999999999999888876
Q ss_pred hhhh
Q 013323 425 VVVS 428 (445)
Q Consensus 425 l~~~ 428 (445)
+...
T Consensus 573 ~~~~ 576 (597)
T 2xpi_A 573 LHES 576 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=1.8e-18 Score=161.46 Aligned_cols=331 Identities=11% Similarity=-0.065 Sum_probs=174.6
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
...+..+-..+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...|+.+.+.. +.+..+|..+..+
T Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 3344444455556666666666666555432 3355566666666666666666666666665532 1234456666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCch
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 199 (445)
+.+.|++++|.+.|+++.+.. |+ ...+..+-..+...|++++|.+.|+++.+.. +-+..+|..+...+...|+.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~-- 185 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEI-- 185 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH--
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH--
Confidence 666666666666666665532 33 3345555555556666666666666665542 12355566666666666544
Q ss_pred HHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhh-cCcccCchhHHHHHHHHHHhcccHHHHHH
Q 013323 200 DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRR-GGFLSRLLTVYHVAFHACAELKDVQAMET 278 (445)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~li~~~~~~g~~~~a~~ 278 (445)
+.|...++.......-... .....+.................+ -...+.+..++..+...+.+.|++++|..
T Consensus 186 ~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLD-------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666666655443210000 000000000000000000000000 00013345566666666667777777777
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 279 LLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 279 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
.++.+.+. .| +..+|..+...+.+.|++++|.+.|+.+.+. .+.+..++..+.. .+.+.|. ++|.+.++++
T Consensus 259 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~----~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 259 TYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLAN----IKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHH----HHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHH----HHHHcCCHHHHHHHHHHH
Confidence 77666653 23 3456666666677777777777777666654 2335556665555 3455565 6677777666
Q ss_pred HhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 357 NSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 357 ~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
.+.. +.+..++..+...+. +.|++++|...|+++.+
T Consensus 332 l~~~-p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 332 LEVF-PEFAAAHSNLASVLQ--QQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTSC-TTCHHHHHHHHHHHH--TTTCCHHHHHHHHHHHT
T ss_pred HhcC-CCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Confidence 6542 223345555555554 66777777777766664
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=6.7e-19 Score=164.38 Aligned_cols=356 Identities=13% Similarity=0.012 Sum_probs=264.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
...+.+.|++++|.+.++.+.+.. +.+...+..+-..+...|++++|...++...+.. +.+..+|..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 456778999999999999987753 2345566677778889999999999999988754 45788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCchHHHHHH
Q 013323 128 DQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDTATKI 205 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~ 205 (445)
++|...|+++... .| +..+|..+..++.+.|++++|...|+++.+.. |+ ...+..+-..+...|+. +.|...
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~--~~A~~~ 157 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRL--EEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCH--HHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCH--HHHHHH
Confidence 9999999999874 34 45689999999999999999999999998864 54 45566666777788866 899999
Q ss_pred HHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013323 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKK 285 (445)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 285 (445)
++.+.....................+...+..... ... .. ..+.+...|..+-..+...|++++|...++...+
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~a--l~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF-EKA--VT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH-HHH--HH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHH--Hh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98877653211100000000000001111111100 000 00 1134556777788888888889999888887765
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCC
Q 013323 286 DRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFL 363 (445)
Q Consensus 286 ~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p 363 (445)
. .| +..++..+...|.+.|++++|.+.|+.+.+..- .+..+|..+.. .+.+.|+ ++|.+.|+++.+.. +.
T Consensus 232 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~----~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 232 L--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLAN----ALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred h--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 3 45 567888999999999999999999999988632 24667777777 5778888 99999999998764 34
Q ss_pred CcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhhhh
Q 013323 364 SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVS 428 (445)
Q Consensus 364 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~ 428 (445)
+..++..+...+. +.|++++|...|+++.+.. +.+..++..+...+.+.|..++|...+...
T Consensus 304 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 304 HADSLNNLANIKR--EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHH--TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6678888877776 9999999999999997642 345778888999999999999998866543
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=193.08 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=129.4
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMML---DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 116 (445)
-..+||++|++|++.|++++|.++|++|.+ .|+.||..|||+||+++|+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988864 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 013323 117 LISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD------KFCYAGLIT 189 (445)
Q Consensus 117 ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~ 189 (445)
||+++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 78999999999999999999999999877764 344444444 3455554 556666777
Q ss_pred HHHccC
Q 013323 190 AHTNKI 195 (445)
Q Consensus 190 ~~~~~~ 195 (445)
.+.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=190.24 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 013323 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKA---NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL 152 (445)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~l 152 (445)
..||++||++|++.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999998874 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 013323 153 LNACAAAGQL-DPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193 (445)
Q Consensus 153 i~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 193 (445)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999985 7899999999999999999999999876544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1.1e-17 Score=159.32 Aligned_cols=312 Identities=9% Similarity=-0.043 Sum_probs=254.1
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
+.++..|..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..++...|++++|...|+.+.+.+ +.+..+|..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3467788999999999999999999999998753 3478889999999999999999999999999865 3468899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCcc-H---HHHHHHHH------------HHHHcCChhhHHHHHHHHHHcCCCCCH
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPN-G---QTYVCLLN------------ACAAAGQLDPVYAIVRDMTAAGAGLDK 181 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~~y~~li~------------~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (445)
..+|.+.|++++|...|+++.+.. |+ . ..+..+.. .+.+.|++++|...|+++.+.. +.+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999998753 43 3 56666544 4889999999999999998864 3478
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHH
Q 013323 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261 (445)
Q Consensus 182 ~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 261 (445)
.++..+...+.+.|+. +.|...++.+.... +.+..+|.
T Consensus 178 ~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~----------------------------------------~~~~~~~~ 215 (450)
T 2y4t_A 178 ELRELRAECFIKEGEP--RKAISDLKAASKLK----------------------------------------NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHTTCG--GGGHHHHHHHHHHH----------------------------------------CSCHHHHH
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC----------------------------------------CCCHHHHH
Confidence 8899999999999977 88999998876542 55677899
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHH------------HHHHHhcCChhhHHHHHHHHHhCCCCCC--
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKDRKSPD-VYIVMQN------------IRCYLHSGDIDNGHKVFEDYICSEKFPP-- 326 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 326 (445)
.+...+...|++++|...++.+.+. .|+ ...+..+ ...|.+.|++++|...|+.+.+. .|+
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 9999999999999999999998864 453 3444444 78899999999999999999875 344
Q ss_pred ---HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCC-
Q 013323 327 ---AELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS- 401 (445)
Q Consensus 327 ---~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~- 401 (445)
..+|..+.. .+.+.|. ++|...++++.+.. +.+...+..+..+|. +.|++++|...|++..+ +.|+
T Consensus 292 ~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 292 EYTVRSKERICH----CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYL--IEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HHHHHHHHHHHH----HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHH--hCcch
Confidence 335555555 5677888 99999999988764 235677888888777 99999999999999986 4455
Q ss_pred HHHHHHHH
Q 013323 402 LPAVEAYY 409 (445)
Q Consensus 402 ~~~~~~l~ 409 (445)
...+..+-
T Consensus 363 ~~~~~~l~ 370 (450)
T 2y4t_A 363 QQIREGLE 370 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=1.3e-15 Score=144.86 Aligned_cols=328 Identities=8% Similarity=-0.048 Sum_probs=251.1
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-H---HH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD-V---AV 113 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~ 113 (445)
..+..+|..+..++...|++++|.+.|+.+.+.+ +.+...+..+..++.+.|++++|...|+.+.+.. |+ . .+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 133 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEA 133 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHH
Confidence 4578899999999999999999999999998865 2357789999999999999999999999999864 54 3 56
Q ss_pred HHHHHHH------------HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH
Q 013323 114 YNYLISV------------CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK 181 (445)
Q Consensus 114 ~~~ll~~------------~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 181 (445)
+..+... +.+.|++++|..+|+++.+.. +.+..++..+..+|.+.|++++|..+|+++.+.. +.+.
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 211 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 6666444 889999999999999998753 3467889999999999999999999999998753 3468
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHH
Q 013323 182 FCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYH 261 (445)
Q Consensus 182 ~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 261 (445)
.++..+...+...|+. +.|...++.+.... +.+...+.
T Consensus 212 ~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~----------------------------------------p~~~~~~~ 249 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDH--ELSLSEVRECLKLD----------------------------------------QDHKRCFA 249 (450)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC----------------------------------------TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC----------------------------------------CChHHHHH
Confidence 8999999999999876 89999998877542 22223333
Q ss_pred H------------HHHHHHhcccHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 013323 262 V------------AFHACAELKDVQAMETLLEMLKKDRKSPD-----VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324 (445)
Q Consensus 262 ~------------li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 324 (445)
. +...+.+.|++++|...++.+.+. .|+ ...|..+...+.+.|++++|...++.+.+.. +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p 326 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-P 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 3 378899999999999999998873 354 4578889999999999999999999988752 2
Q ss_pred CCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcc-hhhHHHHH----------hhcccCC-----ChhhHH
Q 013323 325 PPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPR-MGSDLLLV----------AAGEKSG-----GYTTAN 387 (445)
Q Consensus 325 p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~-~~~~ll~~----------~~~~~~g-----~~~~A~ 387 (445)
.+...|..+.. .|...|+ ++|...++++.+. .|+.. .+..+-.+ ..+...| +.+++.
T Consensus 327 ~~~~~~~~l~~----~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 327 DNVNALKDRAE----AYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp TCHHHHHHHHH----HHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred ccHHHHHHHHH----HHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 36778888777 5678888 9999999999884 45543 33333311 0112333 667778
Q ss_pred HHHHHHH-HC--CCCCCH-------HHHHHHHhhhhccCCCCCC
Q 013323 388 YIWDLMQ-AR--KITPSL-------PAVEAYYNGLKDREVPADD 421 (445)
Q Consensus 388 ~~~~~m~-~~--~~~p~~-------~~~~~l~~~~~~~~~~~~a 421 (445)
+.|+++. +. +..|+. ..+..+..++...+.++..
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 8887643 21 112332 3666777777766666543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.5e-16 Score=149.95 Aligned_cols=334 Identities=8% Similarity=-0.070 Sum_probs=209.9
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC----------
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL---------- 108 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~---------- 108 (445)
|+...|..+..++.+.|++++|.+.|+...+.+ +.+..+|..+..++.+.|++++|...|+.+.+.+-.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 788888888888888888888888888887754 235567888888888888888888888887665410
Q ss_pred -------------------------------------------------------------------C-CHHHHHHHHHH
Q 013323 109 -------------------------------------------------------------------P-DVAVYNYLISV 120 (445)
Q Consensus 109 -------------------------------------------------------------------p-~~~~~~~ll~~ 120 (445)
| +...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 0 02222222233
Q ss_pred HH---ccCCHHHHHHHHHHHHh-----CCC--------CccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHH
Q 013323 121 CG---KCKNSDQAIRIFEEMKK-----YEV--------KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184 (445)
Q Consensus 121 ~~---~~g~~~~a~~~~~~m~~-----~g~--------~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 184 (445)
+. +.|++++|..+|+++.+ ..- +.+..+|..+...+...|++++|...|+++.+.. |+...+
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH
Confidence 33 27888888888888776 211 2235667777888888888888888888887764 336777
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHH
Q 013323 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264 (445)
Q Consensus 185 ~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li 264 (445)
..+...+...|+. +.+...++...... +.+...|..+.
T Consensus 274 ~~l~~~~~~~~~~--~~A~~~~~~~~~~~----------------------------------------~~~~~~~~~l~ 311 (514)
T 2gw1_A 274 IYMALIMADRNDS--TEYYNYFDKALKLD----------------------------------------SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHTSSCC--TTGGGHHHHHHTTC----------------------------------------TTCTHHHHHHH
T ss_pred HHHHHHHHHCCCH--HHHHHHHHHHhhcC----------------------------------------cCCHHHHHHHH
Confidence 7777777777766 67777777665432 33445566666
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChh
Q 013323 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344 (445)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 344 (445)
..+...|++++|...++...+.. +.+...+..+...|...|++++|.++|+.+.+.. +.+...+..+.. .+...
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~----~~~~~ 385 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAE----ILTDK 385 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH----HHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHH----HHHHC
Confidence 66666777777777776665532 1244566666666667777777777777666542 113344444444 34555
Q ss_pred hH-HHHHHHHHHHHhCCCC-CC----cchhhHHHHHhhccc---CCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhcc
Q 013323 345 GM-QLAQDTLVNMNSRNIF-LS----PRMGSDLLLVAAGEK---SGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDR 415 (445)
Q Consensus 345 g~-~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 415 (445)
|. ++|...++++.+.... ++ ...+..+...+. + .|++++|...|++..+.. +.+..++..+...+.+.
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT--RNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH--TSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh--hhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 65 6666666666543211 11 114444444444 5 677777777776666432 22345555566666666
Q ss_pred CCCCCCCchhh
Q 013323 416 EVPADDPRLVV 426 (445)
Q Consensus 416 ~~~~~a~~~l~ 426 (445)
|..++|...+.
T Consensus 463 g~~~~A~~~~~ 473 (514)
T 2gw1_A 463 EDIDEAITLFE 473 (514)
T ss_dssp TCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 66666665433
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.1e-16 Score=148.78 Aligned_cols=333 Identities=8% Similarity=-0.081 Sum_probs=256.8
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
...|-..-..+.+.|++++|...|+++.+.. ||..+|..+..++.+.|++++|...++.+.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456667788899999999999999999865 899999999999999999999999999999865 3467899999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCc--------------------------------------------------------
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKP-------------------------------------------------------- 144 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p-------------------------------------------------------- 144 (445)
+.+.|++++|...|+++...+-..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999987654210
Q ss_pred ----------------------cHHHHHHHHHHHHH---cCChhhHHHHHHHHHH-----cCCC--------CCHHHHHH
Q 013323 145 ----------------------NGQTYVCLLNACAA---AGQLDPVYAIVRDMTA-----AGAG--------LDKFCYAG 186 (445)
Q Consensus 145 ----------------------~~~~y~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~ 186 (445)
+...+......+.. .|++++|..+|+++.+ ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12223333333333 7889999999999887 3111 23456666
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 187 li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
+...+...|+. +.|...++..... .|+...+..+...
T Consensus 243 ~~~~~~~~~~~--~~A~~~~~~~l~~-----------------------------------------~~~~~~~~~l~~~ 279 (514)
T 2gw1_A 243 TGIFKFLKNDP--LGAHEDIKKAIEL-----------------------------------------FPRVNSYIYMALI 279 (514)
T ss_dssp HHHHHHHSSCH--HHHHHHHHHHHHH-----------------------------------------CCCHHHHHHHHHH
T ss_pred HHHHHHHCCCH--HHHHHHHHHHHhh-----------------------------------------CccHHHHHHHHHH
Confidence 77777888865 8888888877654 2236778889999
Q ss_pred HHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH
Q 013323 267 CAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM 346 (445)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~ 346 (445)
+...|++++|...++...+.. +.+..++..+...|...|++++|...|+......-. +...+..+.. .+...|.
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~----~~~~~~~ 353 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLAC----LAYRENK 353 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHH----HTTTTTC
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHH----HHHHcCC
Confidence 999999999999999988653 336678888999999999999999999999886322 4556666666 5788888
Q ss_pred -HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCC-CCC----HHHHHHHHhhhhc---cCC
Q 013323 347 -QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI-TPS----LPAVEAYYNGLKD---REV 417 (445)
Q Consensus 347 -~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~~~ 417 (445)
++|...++++.+.. +.+...+..+...+. +.|++++|...|+++.+..- .|+ ...+..+...+.+ .|.
T Consensus 354 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 354 FDDCETLFSEAKRKF-PEAPEVPNFFAEILT--DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999998764 234566666666666 99999999999999875321 122 3377778888888 888
Q ss_pred CCCCCchhhhh
Q 013323 418 PADDPRLVVVS 428 (445)
Q Consensus 418 ~~~a~~~l~~~ 428 (445)
.++|...+...
T Consensus 431 ~~~A~~~~~~a 441 (514)
T 2gw1_A 431 FIEATNLLEKA 441 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887755443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=5.6e-14 Score=128.91 Aligned_cols=317 Identities=9% Similarity=-0.056 Sum_probs=243.9
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
|+..|..+-..+...|++++|.+.|+...+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677788889999999999999999998753 2467788889999999999999999999998764 236789999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCc----cHHHHHHH------------HHHHHHcCChhhHHHHHHHHHHcCCCCCHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKP----NGQTYVCL------------LNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~y~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 183 (445)
.+.+.|++++|...|++..+. .| +...+..+ ...+...|++++|..+++++.+.. +.+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 999999999999999999875 34 44445444 578899999999999999998864 346788
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHH
Q 013323 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA 263 (445)
Q Consensus 184 ~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 263 (445)
+..+...+...|+. +.|...++...... +.+..++..+
T Consensus 157 ~~~~~~~~~~~~~~--~~A~~~~~~~~~~~----------------------------------------~~~~~~~~~l 194 (359)
T 3ieg_A 157 RELRAECFIKEGEP--RKAISDLKAASKLK----------------------------------------SDNTEAFYKI 194 (359)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHTTC----------------------------------------SCCHHHHHHH
T ss_pred HHHHHHHHHHCCCH--HHHHHHHHHHHHhC----------------------------------------CCCHHHHHHH
Confidence 88888889988876 88999888876542 5566788899
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHH------------HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 013323 264 FHACAELKDVQAMETLLEMLKKDRKSPD-VYIVM------------QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELY 330 (445)
Q Consensus 264 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 330 (445)
...+...|++++|...++...+. .|+ ...+. .+...+.+.|++++|...|+...+..-. +...+
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 271 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYT 271 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHH
Confidence 99999999999999999988764 233 33232 2356688999999999999998886322 23222
Q ss_pred HHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCC-HHHHHHH
Q 013323 331 ATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPS-LPAVEAY 408 (445)
Q Consensus 331 ~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 408 (445)
..+...+...+...|. +.|.+.+++..+.. +.++..+..+...+. +.|++++|...|++..+. .|+ ...+..+
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYL--IEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 2221111125677888 99999999998864 225566666666666 999999999999999864 455 4444444
Q ss_pred Hhh
Q 013323 409 YNG 411 (445)
Q Consensus 409 ~~~ 411 (445)
.++
T Consensus 347 ~~~ 349 (359)
T 3ieg_A 347 EKA 349 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=6.8e-14 Score=126.87 Aligned_cols=168 Identities=8% Similarity=-0.008 Sum_probs=112.3
Q ss_pred CCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 013323 36 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115 (445)
Q Consensus 36 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 115 (445)
....+...+..+...+...|++++|.++|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..+|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 345667777778888888888888888888887653 2244456666677778888888888888887753 23567777
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 013323 116 YLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 116 ~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 194 (445)
.+...+...| ++++|...|++..... +.+...|..+...+...|++++|...|++..+..- .+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 8888888888 8888888888887653 23466788888888888888888888887776531 1223333344444444
Q ss_pred CCCchHHHHHHHHHH
Q 013323 195 IPRADDTATKIIELV 209 (445)
Q Consensus 195 ~~~~~~~a~~~~~~~ 209 (445)
|+. +.|...++..
T Consensus 173 ~~~--~~A~~~~~~a 185 (330)
T 3hym_B 173 NNS--KLAERFFSQA 185 (330)
T ss_dssp TCH--HHHHHHHHHH
T ss_pred hhH--HHHHHHHHHH
Confidence 433 4444444443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.3e-14 Score=127.63 Aligned_cols=286 Identities=9% Similarity=-0.041 Sum_probs=226.6
Q ss_pred CCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 013323 72 VQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151 (445)
Q Consensus 72 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 151 (445)
.+.+...+..+...+...|++++|.++|+++.+.. +.+..++..+..++.+.|++++|..+++++.+.. +.+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34455667778888888999999999999998764 2455677778899999999999999999998753 235778999
Q ss_pred HHHHHHHcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhc
Q 013323 152 LLNACAAAG-QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM 230 (445)
Q Consensus 152 li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (445)
+...+...| ++++|...|++..+.. +.+...+..+...+...|+. +.|...++......
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~----------------- 155 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH--DQAMAAYFTAAQLM----------------- 155 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhc-----------------
Confidence 999999999 9999999999998764 23567788888889888876 88999988877642
Q ss_pred ccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 013323 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310 (445)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 310 (445)
+.+...+..+...+...|++++|...++...+.. +.+..++..+...|...|++++
T Consensus 156 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 211 (330)
T 3hym_B 156 -----------------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKT 211 (330)
T ss_dssp -----------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHH
Confidence 3345567778889999999999999999988753 3367789999999999999999
Q ss_pred HHHHHHHHHhCC--------CCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCC
Q 013323 311 GHKVFEDYICSE--------KFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSG 381 (445)
Q Consensus 311 a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g 381 (445)
|...|+...+.. .......+..+-. .|...|. ++|...+++..+.. +.+...+..+...+. +.|
T Consensus 212 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~--~~g 284 (330)
T 3hym_B 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH----VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHS--LMG 284 (330)
T ss_dssp HHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH--HHT
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHH----HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH--Hhc
Confidence 999999987641 1233567777766 5678888 99999999998765 235566777777676 999
Q ss_pred ChhhHHHHHHHHHHCCCCC-CHHHHHHHHhhh
Q 013323 382 GYTTANYIWDLMQARKITP-SLPAVEAYYNGL 412 (445)
Q Consensus 382 ~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~ 412 (445)
++++|...|++..+. .| +...+..+..++
T Consensus 285 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 285 NFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 999999999988753 35 566666666666
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.64 E-value=7.7e-14 Score=135.69 Aligned_cols=225 Identities=11% Similarity=-0.019 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccch
Q 013323 148 TYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227 (445)
Q Consensus 148 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (445)
+|..+-..+...|++++|...|++..+. .|+...+..+-..+...|+. +.|...++......
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-------------- 306 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS--QEFFKFFQKAVDLN-------------- 306 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC--HHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH--HHHHHHHHHHhccC--------------
Confidence 3444555566666667777776666664 24455555566666666655 66666666554432
Q ss_pred hhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013323 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 307 (445)
+.+..+|..+...+...|++++|...++...+.. +.+...+..+...|...|+
T Consensus 307 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 307 --------------------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTC
T ss_pred --------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3345566667777777777777777777666532 1234566667777777777
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhh------HHHHHhhcccC
Q 013323 308 IDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGS------DLLLVAAGEKS 380 (445)
Q Consensus 308 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~------~ll~~~~~~~~ 380 (445)
+++|.+.|+...+.. +.+...+..+-. .+...|. +.|.+.++++.+.... +...+. .....+. +.
T Consensus 360 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~a~~~~--~~ 431 (537)
T 3fp2_A 360 FTESEAFFNETKLKF-PTLPEVPTFFAE----ILTDRGDFDTAIKQYDIAKRLEEV-QEKIHVGIGPLIGKATILA--RQ 431 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHH-CSSCSSTTHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHH----HHHHhCCHHHHHHHHHHHHHcCCc-chhhHHHHHHHHHHHHHHH--HH
Confidence 777777777766552 123445555544 3455666 7777777766544311 111111 1112222 44
Q ss_pred ----------CChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhh
Q 013323 381 ----------GGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVV 426 (445)
Q Consensus 381 ----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~ 426 (445)
|++++|...|++..+.. +.+...+..+...+.+.|..++|...+.
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77777777777766432 2234556666666667776666665433
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=2.9e-15 Score=137.06 Aligned_cols=272 Identities=12% Similarity=0.097 Sum_probs=123.6
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC
Q 013323 31 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD 110 (445)
Q Consensus 31 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 110 (445)
+.+++. ++..+|..+..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|...++..++. .++
T Consensus 24 ~fae~~--~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~ 93 (449)
T 1b89_A 24 EFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhC--CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Ccc
Confidence 344444 44569999999999999999999999653 68889999999999999999999988877764 467
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 190 (445)
+.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+..+
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~ 157 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST 157 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHH
Confidence 8899999999999999999998885 378889999999999999999999999977 479999999
Q ss_pred HHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhc
Q 013323 191 HTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL 270 (445)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~ 270 (445)
+.+.|+. +.|.+.+... .++.+|..++.+|...
T Consensus 158 L~~Lg~y--q~AVea~~KA---------------------------------------------~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 158 LVHLGEY--QAAVDGARKA---------------------------------------------NSTRTWKEVCFACVDG 190 (449)
T ss_dssp HHTTTCH--HHHHHHHHHH---------------------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHhccH--HHHHHHHHHc---------------------------------------------CCchhHHHHHHHHHHc
Confidence 9999976 7787777754 2557899999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChh--hH-H
Q 013323 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK--GM-Q 347 (445)
Q Consensus 271 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--g~-~ 347 (445)
|+++.|...... +..+..-...++..|.+.|++++|..+++...... +--...|+-|-- .|++- +. .
T Consensus 191 ~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~i----l~~ky~p~k~~ 260 (449)
T 1b89_A 191 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI----LYSKFKPQKMR 260 (449)
T ss_dssp TCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH----HHHTTCHHHHH
T ss_pred CcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHH----HHHhcCHHHHH
Confidence 999999654443 22333335579999999999999999999887653 223445554433 23333 33 4
Q ss_pred HHHHHHHHHHhCCCCC------CcchhhHHHHHhhcccCCChhhHHHH
Q 013323 348 LAQDTLVNMNSRNIFL------SPRMGSDLLLVAAGEKSGGYTTANYI 389 (445)
Q Consensus 348 ~a~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~~~g~~~~A~~~ 389 (445)
+.++.|. .+-+++| +...|.-+...|. +.++++.|..+
T Consensus 261 ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~--~~~e~d~A~~t 304 (449)
T 1b89_A 261 EHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYD--KYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHH--HTTCHHHHHHH
T ss_pred HHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHH
Confidence 5555443 2223333 4567777777666 99999998765
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.61 E-value=8.1e-13 Score=121.13 Aligned_cols=301 Identities=9% Similarity=-0.016 Sum_probs=230.9
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
|...+..+-..+.+.|++++|...|+.+.+.. +.+..+|..+...+...|++++|...|++..+.. +-+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567777888999999999999999998864 3468899999999999999999999999998753 235788999999
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHccCCCchHHHHHHHHHHHHhcCCccc
Q 013323 155 ACAAAGQLDPVYAIVRDMTAAGAGL----DKFCYAGL------------ITAHTNKIPRADDTATKIIELVEQSKGWSSV 218 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 218 (445)
.+...|++++|...|++..+.. | +...+..+ ...+...|+. +.|...++......
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~----- 150 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY--TAAITFLDKILEVC----- 150 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-----
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhC-----
Confidence 9999999999999999998753 4 33333333 3566677765 88888888876542
Q ss_pred cccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013323 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQN 298 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 298 (445)
+.+...+..+...+...|++++|...++...+.. +.+..++..+
T Consensus 151 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 194 (359)
T 3ieg_A 151 -----------------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKI 194 (359)
T ss_dssp -----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHH
T ss_pred -----------------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566788889999999999999999999988753 3467789999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH--------hHhhcCChhhH-HHHHHHHHHHHhCCCCCCcch--
Q 013323 299 IRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE--------GAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRM-- 367 (445)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--------~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~-- 367 (445)
...|...|++++|.+.|+...+..- .+...+..+.. .....+.+.|. ++|...+++..+.. |+...
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 271 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYT 271 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHH
Confidence 9999999999999999999887522 12333322211 00113667787 99999999998765 44322
Q ss_pred ---hhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCCCCCCchhhhh
Q 013323 368 ---GSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVPADDPRLVVVS 428 (445)
Q Consensus 368 ---~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~l~~~ 428 (445)
+..+...+. +.|++++|...+++..+.. +.+..++..+...+.+.|..++|...+...
T Consensus 272 ~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 272 VRSKERICHCFS--KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222334444 9999999999999998752 336778888889999999999888765544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=4e-14 Score=130.72 Aligned_cols=300 Identities=10% Similarity=-0.048 Sum_probs=162.9
Q ss_pred HhcCcHhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 013323 52 TSQRRFFLLRD-VYDDMMLDGV-QP--TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 52 ~~~~~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
...|+++.|.+ .|++.....- .| +...+..+-..+.+.|++++|...|+.+.+.. +.+..+|..+..++.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34567777777 6664433210 11 34457777788888999999999999988865 34677888888999999999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCCchHHHHHHH
Q 013323 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKF-CYAGLITAHTNKIPRADDTATKII 206 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~~~a~~~~ 206 (445)
++|...|++..+.. +.+..+|..+...+...|++++|...|+++.+.. |+.. .+..+-.. .+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~--------- 179 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG---AGGA--------- 179 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH---hhhh---------
Confidence 99999999887754 2367788888899999999999999999888753 2211 11100000 0000
Q ss_pred HHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC
Q 013323 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286 (445)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 286 (445)
.+.. .+. .+..+...|++++|...++.+.+.
T Consensus 180 -----------------------------------------------~~~~-~~~-~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 180 -----------------------------------------------GLGP-SKR-ILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp ------------------------------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cccH-HHH-HHHHHhhcccHHHHHHHHHHHHHh
Confidence 0000 011 111122455566666666555543
Q ss_pred CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCC
Q 013323 287 RKS-PDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLS 364 (445)
Q Consensus 287 ~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~ 364 (445)
... ++..++..+...|...|++++|...|+...... +.+...|..+.. .+...|. ++|...++++.+.. +.+
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~al~~~-~~~ 284 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGA----TLANGNQSEEAVAAYRRALELQ-PGY 284 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 211 134555555566666666666666666555431 113444444444 3444555 56666666555433 123
Q ss_pred cchhhHHHHHhhcccCCChhhHHHHHHHHHHCCC---CC-------CHHHHHHHHhhhhccCCCCCCCch
Q 013323 365 PRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI---TP-------SLPAVEAYYNGLKDREVPADDPRL 424 (445)
Q Consensus 365 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~---~p-------~~~~~~~l~~~~~~~~~~~~a~~~ 424 (445)
...+..+...+. +.|++++|...|++..+..- .| ...+|..+...+...|..++|..+
T Consensus 285 ~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 285 IRSRYNLGISCI--NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 344444444444 56666666666655553110 00 145555555666666655555543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.60 E-value=2.9e-13 Score=124.86 Aligned_cols=235 Identities=7% Similarity=-0.066 Sum_probs=165.6
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+-..+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|+.+.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678889999999999999999999999864 3467789999999999999999999999998865 347889999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHH---------------HHHHHHHcCChhhHHHHHHHHHHcCCC-CCHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC---------------LLNACAAAGQLDPVYAIVRDMTAAGAG-LDKFC 183 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~ 183 (445)
.+...|++++|...|+++...... +...+.. .+..+...|++++|...|+++.+.... ++..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999999999876422 2222221 233444777888888888877764311 13566
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHH
Q 013323 184 YAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA 263 (445)
Q Consensus 184 ~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 263 (445)
+..+...+...|+. +.|...++...... +.+..+|..+
T Consensus 220 ~~~l~~~~~~~g~~--~~A~~~~~~al~~~----------------------------------------~~~~~~~~~l 257 (368)
T 1fch_A 220 QCGLGVLFNLSGEY--DKAVDCFTAALSVR----------------------------------------PNDYLLWNKL 257 (368)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHHC----------------------------------------TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHhC----------------------------------------cCCHHHHHHH
Confidence 66666666666654 66666666544331 3344556666
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 264 FHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 264 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
...+...|++++|...++...+.. +.+..++..+...|.+.|++++|...|+...+
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666655431 22445566666666666666666666666554
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=2.2e-13 Score=125.66 Aligned_cols=234 Identities=7% Similarity=-0.041 Sum_probs=177.6
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+...+.+.|++++|.+.|+.+.+.. +.+..+|..+...+.+.|++++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998754 3467788999999999999999999999988764 345888999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCcc-----------HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC-CCHHHHHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPN-----------GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG-LDKFCYAGL 187 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 187 (445)
+|.+.|++++|...|+++.+.. |+ ...+..+...+.+.|++++|..+|+++.+..-. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999987642 32 223344577888889999999999998876422 257788888
Q ss_pred HHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHH
Q 013323 188 ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267 (445)
Q Consensus 188 i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~ 267 (445)
...+...|+. +.|...++...... +.+..+|..+...+
T Consensus 220 ~~~~~~~g~~--~~A~~~~~~al~~~----------------------------------------p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 220 GVLFHLSGEF--NRAIDAFNAALTVR----------------------------------------PEDYSLWNRLGATL 257 (365)
T ss_dssp HHHHHHHTCH--HHHHHHHHHHHHHC----------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHCCCH--HHHHHHHHHHHHhC----------------------------------------CCCHHHHHHHHHHH
Confidence 8888888866 78888887766542 44566788888888
Q ss_pred HhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 268 AELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
...|++++|...++...+. .| +..++..+...|.+.|++++|...|+...+.
T Consensus 258 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888887764 34 4667888888888888888888888887654
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.59 E-value=2.5e-12 Score=124.94 Aligned_cols=306 Identities=9% Similarity=-0.048 Sum_probs=231.9
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC------------
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN------------ 105 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------------ 105 (445)
+.++.+|..+..++.+.|++++|.+.|++..+.+ +.+..++..+..++...|++++|...|+.+...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 3467888888888899999999999999887754 235667777778888888888887766432100
Q ss_pred --------------------------------------------------------------------------------
Q 013323 106 -------------------------------------------------------------------------------- 105 (445)
Q Consensus 106 -------------------------------------------------------------------------------- 105 (445)
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred ---------------CCCCC--------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCCh
Q 013323 106 ---------------GFLPD--------VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162 (445)
Q Consensus 106 ---------------g~~p~--------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 162 (445)
...|+ ..+|..+-..+...|++++|...|++.... .|+..+|..+...+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 01122 224555667778889999999999999875 46688899999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhh
Q 013323 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPT 242 (445)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (445)
++|...|++..+.. +.+..++..+...+...|+. +.|...++......
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~----------------------------- 340 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY--KNAKEDFQKAQSLN----------------------------- 340 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhC-----------------------------
Confidence 99999999998864 33678888888889888876 88999998877642
Q ss_pred hhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 013323 243 AEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322 (445)
Q Consensus 243 ~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 322 (445)
+.+...|..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.|+...+..
T Consensus 341 -----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 341 -----------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp -----------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3455678889999999999999999999988753 3356788889999999999999999999987642
Q ss_pred -----CCCCHHHHHHHHHhHhhcCChh----------hH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhH
Q 013323 323 -----KFPPAELYATLVEGAMFGYTPK----------GM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTA 386 (445)
Q Consensus 323 -----~~p~~~~~~~li~~~~~~~~~~----------g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A 386 (445)
.......+..+-. .+... |+ ++|...|++..+.. +.+...+..+...+. +.|++++|
T Consensus 409 ~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~--~~g~~~~A 481 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKAT----ILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKL--QMEKIDEA 481 (537)
T ss_dssp HHCSSCSSTTHHHHHHHH----HHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--HTTCHHHH
T ss_pred CcchhhHHHHHHHHHHHH----HHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH--HhccHHHH
Confidence 1111111222222 24455 88 99999999998765 234556666777666 99999999
Q ss_pred HHHHHHHHHCC
Q 013323 387 NYIWDLMQARK 397 (445)
Q Consensus 387 ~~~~~~m~~~~ 397 (445)
...|++..+..
T Consensus 482 ~~~~~~al~~~ 492 (537)
T 3fp2_A 482 IELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998643
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=7.8e-16 Score=140.78 Aligned_cols=281 Identities=9% Similarity=-0.007 Sum_probs=122.4
Q ss_pred hcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 013323 53 SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 132 (445)
+.|++++|.++++++ ++..+|..+..++.+.|++++|.+.|... +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567899999999998 33459999999999999999999999652 688899999999999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+-..|...|.. +.|...|..+.
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~y--eeA~~~Y~~a~-- 149 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMY--DAAKLLYNNVS-- 149 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CT--TTHHHHHHHTT--
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCH--HHHHHHHHHhh--
Confidence 88766663 4668889999999999999999998885 37888999999999999988 88999998541
Q ss_pred cCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH
Q 013323 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292 (445)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 292 (445)
.|..+..++.+.|++++|.+.+..+ .++
T Consensus 150 ----------------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~ 177 (449)
T 1b89_A 150 ----------------------------------------------NFGRLASTLVHLGEYQAAVDGARKA------NST 177 (449)
T ss_dssp ----------------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCH
T ss_pred ----------------------------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCc
Confidence 4999999999999999999999987 378
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHH
Q 013323 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDL 371 (445)
Q Consensus 293 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~l 371 (445)
.+|..++.+|+..|+++.|...... +...+.....++. .|.+.|. ++|..+++...... +-....|+-+
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~----~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel 247 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN----YYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 247 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH----HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHH
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH----HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHH
Confidence 9999999999999999999655443 3334445556776 5788898 99999999987655 4455677777
Q ss_pred HHHhhcccCCChhhHHHHHHHHHHCCCCC------CHHHHHHHHhhhhccCCCCCCC
Q 013323 372 LLVAAGEKSGGYTTANYIWDLMQARKITP------SLPAVEAYYNGLKDREVPADDP 422 (445)
Q Consensus 372 l~~~~~~~~g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~~~~~~a~ 422 (445)
-..++-.+.++..+..+.|. ..-.++| +...|..+.--|.+-+..++|+
T Consensus 248 ~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 66676334555555555442 1233433 3444555555555555554443
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=4e-13 Score=119.61 Aligned_cols=251 Identities=10% Similarity=0.056 Sum_probs=155.5
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTR--DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 126 (445)
+.....|+++.|+..++.... ..|+. .....+..++...|+.+.|...++. . -+|+..++..+...+.+.++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 444556777777776665432 22432 2344556677777777777665533 1 23566677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHH
Q 013323 127 SDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKI 205 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~ 205 (445)
.++|.+.++++...+..|+ ...+..+-..+...|++++|++.+++ +.+...+..+...+.+.|+. +.|.+.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~--~~A~~~ 152 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL--DLARKE 152 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH--HHHHHH
Confidence 7777777777766554453 44455555667777777777777766 34566666667777777755 777777
Q ss_pred HHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhH---HHHHHHHHHhcccHHHHHHHHHH
Q 013323 206 IELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV---YHVAFHACAELKDVQAMETLLEM 282 (445)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~ 282 (445)
++.+... .|+... ....+..+...|++++|..+|++
T Consensus 153 l~~~~~~-----------------------------------------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 153 LKKMQDQ-----------------------------------------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHHH-----------------------------------------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHhh-----------------------------------------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7766553 122111 11222333345778888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-H-HHHHHHHHHHhCC
Q 013323 283 LKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-Q-LAQDTLVNMNSRN 360 (445)
Q Consensus 283 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~-~a~~~~~~m~~~~ 360 (445)
+.+. .+.+...++.+..++.+.|++++|...|++..+.. +-++.++..+.. .+...|. + .+.++++++.+..
T Consensus 192 ~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~----~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 192 MADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVV----LSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH----HHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH----HHHHcCCCHHHHHHHHHHHHHhC
Confidence 7765 34466777778888888888888888888876652 125556666665 3445555 4 4567777776644
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.56 E-value=8.1e-13 Score=119.56 Aligned_cols=235 Identities=10% Similarity=-0.037 Sum_probs=155.7
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+...+...|++++|..+|+++.+.. +.+...|..+...+...|++++|...|+.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 55667777888899999999999999988754 2367778888888999999999999999988764 346788888999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHH--------------HH-HHHHcCChhhHHHHHHHHHHcCCCCCHHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCL--------------LN-ACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 184 (445)
.+...|++++|...|++...... .+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 99999999999999999887531 122223222 11 2555667777777777776643 2245556
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHH
Q 013323 185 AGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAF 264 (445)
Q Consensus 185 ~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li 264 (445)
..+...+...|+. +.|...++...... +.+..++..+.
T Consensus 176 ~~la~~~~~~~~~--~~A~~~~~~~~~~~----------------------------------------~~~~~~~~~l~ 213 (327)
T 3cv0_A 176 ASLGVLYNLSNNY--DSAAANLRRAVELR----------------------------------------PDDAQLWNKLG 213 (327)
T ss_dssp HHHHHHHHHTTCH--HHHHHHHHHHHHHC----------------------------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHHhC----------------------------------------CCcHHHHHHHH
Confidence 6666666666544 56666665544321 23344556666
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
..+...|++++|...++...+.. +.+..++..+...|...|++++|.+.|+.....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666666666655432 123455666666666666666666666665543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=4.4e-13 Score=123.66 Aligned_cols=265 Identities=8% Similarity=-0.061 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+...|..+...+.+.|++++|...|+.+.+.. +.+..+|..+..+|.+.|++++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457788888999999999999999998765 3568899999999999999999999999998753 235788999999
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCcccccccc
Q 013323 155 ACAAAGQLDPVYAIVRDMTAAGAGLD-----------KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGN 223 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 223 (445)
.|...|++++|...|+++.+.. |+ ...+..+...+...|+. +.|...++........
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~-------- 209 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVL--EGVKELYLEAAHQNGD-------- 209 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHH--HHHHHHHHHHHHHSCS--------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhCcC--------
Confidence 9999999999999999998742 22 12222334455555543 6666666665543100
Q ss_pred ccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013323 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYL 303 (445)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 303 (445)
..+..++..+...+...|++++|...++...+.. +.+..+|..+..+|.
T Consensus 210 ------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 210 ------------------------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLA 258 (365)
T ss_dssp ------------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ------------------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 1145567777777777777777777777766532 224567777777777
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCC-----------CCcchhhHH
Q 013323 304 HSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIF-----------LSPRMGSDL 371 (445)
Q Consensus 304 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~-----------p~~~~~~~l 371 (445)
..|++++|...|+...+.. +.+...+..+-. .|...|. ++|...|++..+..-. .+...|..+
T Consensus 259 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGI----SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH----HHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCchHHHHHHHH----HHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHH
Confidence 7777777777777766642 113555555555 4566666 7777777776543210 024455555
Q ss_pred HHHhhcccCCChhhHHHHHH
Q 013323 372 LLVAAGEKSGGYTTANYIWD 391 (445)
Q Consensus 372 l~~~~~~~~g~~~~A~~~~~ 391 (445)
-.++. ..|+.+.+..+.+
T Consensus 334 ~~~~~--~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 334 RIALS--LMDQPELFQAANL 351 (365)
T ss_dssp HHHHH--HHTCHHHHHHHHT
T ss_pred HHHHH--HcCcHHHHHHHHH
Confidence 55555 6677666655543
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.53 E-value=1.3e-12 Score=118.15 Aligned_cols=262 Identities=6% Similarity=-0.054 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
..+..+...+...|++++|..+|+++.+.. +.+..+|..+..++.+.|++++|...|++..+.. +.+..+|..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345666677889999999999999998764 3477889999999999999999999999998753 34678899999999
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH-------------HH--HHccCCCchHHHHHHHHHHHHhcCCcccccc
Q 013323 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-------------TA--HTNKIPRADDTATKIIELVEQSKGWSSVETS 221 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-------------~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (445)
...|++++|...+++..+.... +...+..+. .. +...|+. +.+...++......
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~-------- 168 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY--RECRTLLHAALEMN-------- 168 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHH--HHHHHHHHHHHHHS--------
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccH--HHHHHHHHHHHhhC--------
Confidence 9999999999999999875321 111222210 11 2222222 44455444443321
Q ss_pred ccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013323 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRC 301 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 301 (445)
+.+...+..+...+...|++++|...++...+.. +.+..++..+...
T Consensus 169 --------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 169 --------------------------------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGAT 215 (327)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred --------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 2344556666666666666666666666655432 2245566666666
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCC-----------Ccchhh
Q 013323 302 YLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFL-----------SPRMGS 369 (445)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p-----------~~~~~~ 369 (445)
|...|++++|.+.|+...+.. +.+...+..+.. .|...|. ++|.+.+++..+..... +...+.
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV----SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH----HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH
Confidence 666666666666666665542 123444544444 3455555 66666666665433111 233444
Q ss_pred HHHHHhhcccCCChhhHHHHHH
Q 013323 370 DLLLVAAGEKSGGYTTANYIWD 391 (445)
Q Consensus 370 ~ll~~~~~~~~g~~~~A~~~~~ 391 (445)
.+...+. +.|++++|..+++
T Consensus 291 ~l~~~~~--~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 291 FFRMLLN--VMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHH--HTTCHHHHHHHTT
T ss_pred HHHHHHH--hcCCHHHHHHHHH
Confidence 4444444 6666666666654
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.48 E-value=1.7e-11 Score=109.03 Aligned_cols=224 Identities=12% Similarity=0.029 Sum_probs=181.1
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVC 121 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 121 (445)
..-.+..+|...|+++.|+.-++. .-.|+..++..+...+...++.++|.+.++++...+..| +...+..+-..+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 445577899999999999986654 245677788999999999999999999999999887556 466677777999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCCc
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY---AGLITAHTNKIPRA 198 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~ 198 (445)
.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.|+.+.+.. |+.... ..++..+...|+.
T Consensus 112 ~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~- 182 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKL- 182 (291)
T ss_dssp HHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHH-
T ss_pred HHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHH-
Confidence 999999999999997 4678899999999999999999999999999874 553221 2233333334544
Q ss_pred hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHH
Q 013323 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278 (445)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~ 278 (445)
+.|..+|+.+.... +.+...|+.+..++.+.|++++|..
T Consensus 183 -~eA~~~~~~~l~~~----------------------------------------p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 183 -QDAYYIFQEMADKC----------------------------------------SPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp -HHHHHHHHHHHHHS----------------------------------------CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHHhC----------------------------------------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999887652 6677889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHhC
Q 013323 279 LLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN-GHKVFEDYICS 321 (445)
Q Consensus 279 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 321 (445)
.+++..+.. +-+..++..++..+...|+.++ +.++++.+.+.
T Consensus 222 ~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 222 VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999987642 2367789999999999999976 67899888765
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=2.9e-10 Score=110.40 Aligned_cols=133 Identities=7% Similarity=0.087 Sum_probs=102.4
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
-|...|..++. +.+.|+++.|..+|+++.+. .+-+...|..++..+.+.|+.++|..+|+...+.. |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778888888 47889999999999999875 33467789999999999999999999999998864 7888888777
Q ss_pred HHH-HccCCHHHHHH----HHHHHHh-CCCCc-cHHHHHHHHHHHHH---------cCChhhHHHHHHHHHHc
Q 013323 119 SVC-GKCKNSDQAIR----IFEEMKK-YEVKP-NGQTYVCLLNACAA---------AGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 119 ~~~-~~~g~~~~a~~----~~~~m~~-~g~~p-~~~~y~~li~~~~~---------~g~~~~a~~~~~~m~~~ 175 (445)
... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++..+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 533 34577666554 7776654 35544 45677777776654 68899999999998873
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=5.3e-11 Score=103.56 Aligned_cols=226 Identities=7% Similarity=-0.042 Sum_probs=154.6
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCCC----HHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG--FLPD----VAVY 114 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~ 114 (445)
...|..+-..+...|++++|.+.|++..+.. ++...|..+...+...|++++|...++...+.. ..|+ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456677778888888888888888887766 677778888888888888888888888876542 1112 4677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 194 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 194 (445)
..+...+.+.|++++|...|++.... .|+. ..+.+.|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888888888888888888887763 3443 23555677788888887777642 12344555566666666
Q ss_pred CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHH
Q 013323 195 IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQ 274 (445)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~ 274 (445)
|+. +.|...++...... +.+..+|..+...+...|+++
T Consensus 153 ~~~--~~A~~~~~~a~~~~----------------------------------------~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 153 SDW--PNAVKAYTEMIKRA----------------------------------------PEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp TCH--HHHHHHHHHHHHHC----------------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred cCH--HHHHHHHHHHHhcC----------------------------------------cccHHHHHHHHHHHHHhCCHH
Confidence 654 66777766655432 334556667777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+|...++...+.. +.+...|..+...|.+.|++++|.+.|+...+.
T Consensus 191 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 191 EAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7777777666532 224556666777777777777777777766543
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=1e-10 Score=101.56 Aligned_cols=201 Identities=8% Similarity=-0.061 Sum_probs=138.8
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777788888888888888888877653 2356677777778888888888888888877654 2356777778888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCch
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRAD 199 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 199 (445)
|...|++++|.++|++....+..| +...|..+...+...|++++|...|++..+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------------------- 171 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN----------------------- 171 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 888888888888888877633334 45667777777778888888888877766542
Q ss_pred HHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHH
Q 013323 200 DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279 (445)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 279 (445)
+.+...+..+...+...|++++|...
T Consensus 172 ------------------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 172 ------------------------------------------------------RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp ------------------------------------------------------SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------------------------------------cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11223455555666666677777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 280 LEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 280 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
++...+.. +.+...+..+...+...|+.++|.++++.+.+.
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 198 YDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 76665432 234555666666677777777777777776654
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.38 E-value=1.1e-08 Score=98.29 Aligned_cols=357 Identities=7% Similarity=-0.084 Sum_probs=232.6
Q ss_pred CCChhhHHHHHHHHHh----cCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChhHHHHHHHHHHHCCCCC
Q 013323 38 ANNASEYNTVVTSLTS----QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK----GSRLQDTFFFRDQMKANGFLP 109 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p 109 (445)
.-++.++..+-..|.. .+++++|.+.|+...+.| +...+..|-..+.. .++.++|...|+...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467777777777877 899999999999888765 55667777777777 889999999999988865
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCH
Q 013323 110 DVAVYNYLISVCGK----CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA----AGQLDPVYAIVRDMTAAGAGLDK 181 (445)
Q Consensus 110 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~ 181 (445)
+...+..|-..|.. .+++++|..+|++..+.| +...+..+-..|.. .++.++|.+.|++..+.| +.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677777778877 789999999999988865 55667777777777 778999999999988875 56
Q ss_pred HHHHHHHHHHHcc--CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhH
Q 013323 182 FCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259 (445)
Q Consensus 182 ~~~~~li~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 259 (445)
..+..+-..+... ...+.+.+...++.....+..... .........+... ..+.........+.- ...+...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~---~~lg~~y~~g~g~--~~~~~~A~~~~~~a~-~~~~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQ---LHLADMYYFGIGV--TQDYTQSRVLFSQSA-EQGNSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHTSSS--CCCHHHHHHHHHHHH-TTTCHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHcCCCC--CCCHHHHHHHHHHHH-HCCCHHH
Confidence 6666666666541 122447888888776654321110 0000000000000 000000000011100 0223344
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChhhHHHHHHHHHhCCCCCCHHHH
Q 013323 260 YHVAFHACAE----LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS-----GDIDNGHKVFEDYICSEKFPPAELY 330 (445)
Q Consensus 260 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~ 330 (445)
+..+-..+.. .++.++|...|+...+.| +...+..|-..|... ++.++|..+|+...+.| +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 5555555666 788999999999887654 445666677777776 89999999999988875 33444
Q ss_pred HHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhccc----CCChhhHHHHHHHHHHCCCCCCHHHH
Q 013323 331 ATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEK----SGGYTTANYIWDLMQARKITPSLPAV 405 (445)
Q Consensus 331 ~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~ 405 (445)
..|-..+..+ ....+ ++|.+.|++..+.| ++..+..+-..+. . .+++++|...|++..+.+ ++..+
T Consensus 332 ~~lg~~y~~~-g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~--~g~g~~~~~~~A~~~~~~A~~~~---~~~a~ 402 (490)
T 2xm6_A 332 ANLGAIYFRL-GSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALL--QGKGVKKDEQQAAIWMRKAAEQG---LSAAQ 402 (490)
T ss_dssp HHHHHHHHHS-CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--HTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHhC-CCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence 4444422212 11235 89999999988875 4556666655554 5 789999999999988766 35555
Q ss_pred HHHHhhhhc----cCCCCCCCchhhh
Q 013323 406 EAYYNGLKD----REVPADDPRLVVV 427 (445)
Q Consensus 406 ~~l~~~~~~----~~~~~~a~~~l~~ 427 (445)
..|-..+.+ .+..++|...+..
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 556655555 4555556554433
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=4.5e-10 Score=95.34 Aligned_cols=134 Identities=8% Similarity=-0.092 Sum_probs=97.2
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+...+...|++++|.+.|+...+.. +.+...|..+...+...|++++|...++...+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45567777778888888888888888777643 2346677777777888888888888888877653 235677777788
Q ss_pred HHHcc-CCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 120 VCGKC-KNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 120 ~~~~~-g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
.+... |++++|...|++..+.+..| +...|..+...+...|++++|...|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888 88888888888877632223 2566777777777888888888877777654
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=2.9e-10 Score=98.63 Aligned_cols=210 Identities=6% Similarity=-0.051 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
..|..+...+...|++++|...|+.+.+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.+...|..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 345555566666777777777777666543 2345666666666777777777777776665542 12455666666666
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhh
Q 013323 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEE 236 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (445)
...|++++|...|+++.+.+..
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~---------------------------------------------------------- 137 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLY---------------------------------------------------------- 137 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTC----------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHhCccC----------------------------------------------------------
Confidence 6666666666666665541111
Q ss_pred hcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 013323 237 LYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316 (445)
Q Consensus 237 ~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (445)
+.+...+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...|+
T Consensus 138 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 138 -----------------PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp -----------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2234456777778888999999999999887643 2357788899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHH
Q 013323 317 DYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDL 371 (445)
Q Consensus 317 ~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~l 371 (445)
...+.. ..+...+..+.. .+...|. +.|.+.++++.+.. |+...+..+
T Consensus 200 ~~~~~~-~~~~~~~~~~~~----~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 248 (252)
T 2ho1_A 200 LFAQGG-GQNARSLLLGIR----LAKVFEDRDTAASYGLQLKRLY--PGSLEYQEF 248 (252)
T ss_dssp HHHTTS-CCCHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHC--TTSHHHHHH
T ss_pred HHHHhC-cCcHHHHHHHHH----HHHHccCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 988753 235666666666 4677888 99999999998864 555444433
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=3.7e-10 Score=95.86 Aligned_cols=213 Identities=7% Similarity=-0.019 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+...|..+...+...|++++|.+.|+...+.. +.+..+|..+...+...|++++|...|++..+.. +.+..+|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34567777788888899999999998888754 2457788888888888999999999988887643 235677888888
Q ss_pred HHHHc-CChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhccc
Q 013323 155 ACAAA-GQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGV 232 (445)
Q Consensus 155 ~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (445)
.+... |++++|...++++.+.+..|+ ...+..+...+...|+. +.|...++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~------------------- 143 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF--GLAEAYLKRSLAAQ------------------- 143 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHS-------------------
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-------------------
Confidence 88888 899999999888887433343 45566666677777755 77777777655431
Q ss_pred chhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 013323 233 SKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGH 312 (445)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 312 (445)
+.+...+..+...+...|++++|...++...+.....+...+..+...+...|+.+.|.
T Consensus 144 ---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 144 ---------------------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 33455677777777778888888887777665422135556666667777778888887
Q ss_pred HHHHHHHhCCCCCCHHHHHHH
Q 013323 313 KVFEDYICSEKFPPAELYATL 333 (445)
Q Consensus 313 ~~~~~m~~~~~~p~~~~~~~l 333 (445)
.+++.+... .|+...+..+
T Consensus 203 ~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 203 EYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHH
Confidence 777777643 2444444333
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=6.4e-11 Score=104.18 Aligned_cols=223 Identities=12% Similarity=-0.020 Sum_probs=164.2
Q ss_pred HhcCcHhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 013323 52 TSQRRFFLLRDVYDDMMLDGVQ--P-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 128 (445)
...|++++|++.|+++.+.... | +..+|..+...+...|++++|...|+...+.. +.+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3458899999999999876321 1 35568888888999999999999999998864 246889999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHH
Q 013323 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIEL 208 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~ 208 (445)
+|...|++..+.. +.+..+|..+...+.+.|++++|...|+++.+.. |+.......+..+...|+. +.+...++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~--~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDE--KQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCH--HHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCH--HHHHHHHHH
Confidence 9999999988753 2357889999999999999999999999998853 4444433344444444544 777777765
Q ss_pred HHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCC
Q 013323 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288 (445)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 288 (445)
..... +++...+. +...+...++.++|...+....+...
T Consensus 170 ~~~~~----------------------------------------~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 170 HFEKS----------------------------------------DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHS----------------------------------------CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHhcC----------------------------------------CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 44431 23333333 66667777777888888877654321
Q ss_pred C--C-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 289 S--P-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 289 ~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
. | +..++..+...|.+.|++++|...|+.....
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 1 1 1467778888888889999999988888775
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.35 E-value=3.8e-09 Score=92.86 Aligned_cols=224 Identities=7% Similarity=-0.078 Sum_probs=174.3
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChhHHHHHHHHHHHCCCCCCHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMK----GSRLQDTFFFRDQMKANGFLPDVAVYN 115 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 115 (445)
++.++..+-..+...|++++|.+.|++..+. -+...+..+-..+.. .+++++|...|+...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777778888999999999999998873 355677777788888 999999999999999876 778888
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 013323 116 YLISVCGK----CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA----AGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187 (445)
Q Consensus 116 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 187 (445)
.+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88899998 999999999999998865 67788888889998 999999999999998876 45555555
Q ss_pred HHHHHc----cCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHH
Q 013323 188 ITAHTN----KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVA 263 (445)
Q Consensus 188 i~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 263 (445)
-..+.. .++ .+.|...++...+. .+...+..+
T Consensus 153 g~~~~~~~~~~~~--~~~A~~~~~~a~~~------------------------------------------~~~~a~~~l 188 (273)
T 1ouv_A 153 GSLYDAGRGTPKD--LKKALASYDKACDL------------------------------------------KDSPGCFNA 188 (273)
T ss_dssp HHHHHHTSSSCCC--HHHHHHHHHHHHHT------------------------------------------TCHHHHHHH
T ss_pred HHHHHcCCCCCCC--HHHHHHHHHHHHHC------------------------------------------CCHHHHHHH
Confidence 555554 443 37777777765542 123456666
Q ss_pred HHHHHh----cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCC
Q 013323 264 FHACAE----LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH----SGDIDNGHKVFEDYICSE 322 (445)
Q Consensus 264 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 322 (445)
-..+.. .+++++|...++...+.+ +...+..+-..|.. .+++++|.+.|+...+.|
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677777 888888888888877654 25566667777777 888888888888877764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.4e-10 Score=100.91 Aligned_cols=191 Identities=9% Similarity=-0.038 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCcc----HHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE--VKPN----GQTYV 150 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~y~ 150 (445)
..|..+-..+...|++++|...|++..+.. .+..+|..+..++...|++++|...|++..+.. ..|+ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666677778888888888888887766 677788888888888888888888888776531 1111 46777
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhc
Q 013323 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM 230 (445)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (445)
.+...+...|++++|...|++..+.. |+..+ +.+.|+. +.+...++......
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------~~~~~~~--~~a~~~~~~~~~~~----------------- 135 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTADI-------LTKLRNA--EKELKKAEAEAYVN----------------- 135 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH-------HHHHHHH--HHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chhHH-------HHHHhHH--HHHHHHHHHHHHcC-----------------
Confidence 78888888888888888888777642 33222 2222221 44444444433321
Q ss_pred ccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 013323 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDN 310 (445)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 310 (445)
+.+...+..+...+...|++++|...++...+.. +.+..++..+...|...|++++
T Consensus 136 -----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 136 -----------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHH
Confidence 2233445555555666666666666666555432 1234455555556666666666
Q ss_pred HHHHHHHHHhC
Q 013323 311 GHKVFEDYICS 321 (445)
Q Consensus 311 a~~~~~~m~~~ 321 (445)
|...|+...+.
T Consensus 192 A~~~~~~al~~ 202 (258)
T 3uq3_A 192 AIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666555443
No 39
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=2.2e-09 Score=104.15 Aligned_cols=378 Identities=8% Similarity=0.007 Sum_probs=232.6
Q ss_pred CCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcCCChhHHHH----HHHHHHH-CCCCC
Q 013323 36 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGT-MKGSRLQDTFF----FRDQMKA-NGFLP 109 (445)
Q Consensus 36 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~m~~-~g~~p 109 (445)
.++-+...|..++..+.+.|+++.|..+|++..... |+...|...+... ...|+.+.|.+ +|+.... .|..|
T Consensus 41 ~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~ 118 (530)
T 2ooe_A 41 QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 118 (530)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST
T ss_pred HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc
Confidence 345567789999999999999999999999998753 7888887777533 45677777665 7777654 36544
Q ss_pred -CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH-------------HHcCChhhHH
Q 013323 110 -DVAVYNYLISVCGK---------CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC-------------AAAGQLDPVY 166 (445)
Q Consensus 110 -~~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~-------------~~~g~~~~a~ 166 (445)
+...|...+....+ .|+++.|..+|++.......+....|....... .+.++++.|.
T Consensus 119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 56788888877654 688999999999998732222234444332211 1234566777
Q ss_pred HHHHHHHH------cC---CCCC--------HHHHHHHHHHHHccC----CC--chHHHHHHHHHHHHhcCCcccccccc
Q 013323 167 AIVRDMTA------AG---AGLD--------KFCYAGLITAHTNKI----PR--ADDTATKIIELVEQSKGWSSVETSGN 223 (445)
Q Consensus 167 ~~~~~m~~------~g---~~p~--------~~~~~~li~~~~~~~----~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 223 (445)
.+++++.. .. +.|+ ...|...+....... +. ..+.+..+++.........+... ..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w-~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIW-YE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHH-HH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHH-HH
Confidence 77766431 11 2444 234544443332211 11 01244555655444322211110 00
Q ss_pred ccchhh--------cccchhhhcchhhhhHHhhhc--CcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC--
Q 013323 224 NAENEM--------MGVSKEELYNLPTAEYVHRRG--GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD-- 291 (445)
Q Consensus 224 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 291 (445)
+..... .+.......-.........+. ...+.+...|..+...+.+.|++++|..+|+...+. .|+
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 011100 111110000000000111111 122456788999999999999999999999998873 564
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH--HHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchh
Q 013323 292 VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYA--TLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMG 368 (445)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~ 368 (445)
...|..+...+.+.|++++|.++|+...+..- .+...|. .++. +...|. +.|..+|++..+.. +-++..|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~-----~~~~~~~~~A~~~~e~al~~~-p~~~~~~ 428 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALME-----YYCSKDKSVAFKIFELGLKKY-GDIPEYV 428 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHH-----HHHTCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHH-----HHHcCChhHHHHHHHHHHHHC-CCCHHHH
Confidence 25789899999999999999999999887621 1222222 2222 334666 99999999987754 2245677
Q ss_pred hHHHHHhhcccCCChhhHHHHHHHHHHCC-CCCC--HHHHHHHHhhhhccCCCCCCCchhhh
Q 013323 369 SDLLLVAAGEKSGGYTTANYIWDLMQARK-ITPS--LPAVEAYYNGLKDREVPADDPRLVVV 427 (445)
Q Consensus 369 ~~ll~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~l~~ 427 (445)
..++.... +.|+.++|..+|++..... ..|+ ...|..+++-..+.|..+++..+..-
T Consensus 429 ~~~~~~~~--~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 429 LAYIDYLS--HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHT--TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777776 8999999999999998763 3332 44677777766777877666654433
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.34 E-value=2.2e-10 Score=97.19 Aligned_cols=200 Identities=10% Similarity=-0.033 Sum_probs=156.8
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
+++...|..+-..+.+.|++++|...|++..+.. +.+...|..+-..+.+.|++++|...|+...+.. +.+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4677888889999999999999999999988753 2367778888899999999999999999999865 2457889999
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 013323 118 ISVCGKC-----------KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAG 186 (445)
Q Consensus 118 l~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 186 (445)
-..+.+. |++++|...|++..+.. +-+...|..+-..+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998753 1257788999999999999999999999999877 68888999
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 187 li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
+-..+...|+. +.|...++...... +.+...+..+...
T Consensus 157 la~~~~~~g~~--~~A~~~~~~al~~~----------------------------------------P~~~~~~~~la~~ 194 (217)
T 2pl2_A 157 LAELYLSMGRL--DEALAQYAKALEQA----------------------------------------PKDLDLRVRYASA 194 (217)
T ss_dssp HHHHHHHHTCH--HHHHHHHHHHHHHS----------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHhC----------------------------------------CCChHHHHHHHHH
Confidence 99999999976 88999998876542 5566778888888
Q ss_pred HHhcccHHHHHHHHHHHH
Q 013323 267 CAELKDVQAMETLLEMLK 284 (445)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~ 284 (445)
+...|++++|...++...
T Consensus 195 ~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 195 LLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HTC---------------
T ss_pred HHHccCHHHHHHHHHHHh
Confidence 999999999988887643
No 41
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.33 E-value=1.6e-08 Score=97.02 Aligned_cols=335 Identities=9% Similarity=-0.097 Sum_probs=210.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHH
Q 013323 61 RDVYDDMMLDGVQPTRDLFHSLIVGTMK----GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK----CKNSDQAIR 132 (445)
Q Consensus 61 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~ 132 (445)
++.+....+.| +...+..+-..+.. .++.+.|...|+...+.| +...+..|-..|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455444443 55666666666665 899999999999999875 56778888888888 899999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CCCchHHHHHHH
Q 013323 133 IFEEMKKYEVKPNGQTYVCLLNACAA----AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKII 206 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--~~~~~~~a~~~~ 206 (445)
+|++..+.| +...+..+-..|.. .+++++|...|++..+.| +...+..+-..|... ...+.+.|...+
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998865 56677778888888 789999999999998876 455566665666541 123458888888
Q ss_pred HHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHh----cccHHHHHHHHHH
Q 013323 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE----LKDVQAMETLLEM 282 (445)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~ 282 (445)
+.....+..... .........+... ..+.........+.-. ..+...+..+-..+.. .++.++|...|+.
T Consensus 175 ~~a~~~~~~~a~---~~Lg~~y~~g~g~--~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQGNVWSC---NQLGYMYSRGLGV--ERNDAISAQWYRKSAT-SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTTCHHHH---HHHHHHHHHTSSS--CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHH---HHHHHHHhcCCCC--CcCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 877654321100 0000000000000 0000000000111000 2344456666666665 7789999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhc-CChhhH-HHHHHHHHHH
Q 013323 283 LKKDRKSPDVYIVMQNIRCYLH----SGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFG-YTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 283 m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~g~-~~a~~~~~~m 356 (445)
..+.| +...+..+-..|.. .++.++|..+|+...+.| +...+..|-..+..+ ....++ ++|...+++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 87654 34555556666776 789999999999887764 334444443321111 111255 8999999998
Q ss_pred HhCCCCCCcchhhHHHHHhhcccCC---ChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhc----cCCCCCCCchhhh
Q 013323 357 NSRNIFLSPRMGSDLLLVAAGEKSG---GYTTANYIWDLMQARKITPSLPAVEAYYNGLKD----REVPADDPRLVVV 427 (445)
Q Consensus 357 ~~~~~~p~~~~~~~ll~~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~l~~ 427 (445)
.+.+ ++..+..+-..+. +.| ++++|...|++..+.| ++..+..|-..+.. .+.+++|..++..
T Consensus 323 ~~~~---~~~a~~~lg~~y~--~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYF--RLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHTT---CHHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HhcC---CHHHHHHHHHHHH--hCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 8876 3444555544444 435 7888999999888764 45566666666655 4555555554433
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=5.6e-10 Score=96.12 Aligned_cols=134 Identities=9% Similarity=0.007 Sum_probs=82.6
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
.+...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|...|+...+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 455666777777788888888888888877643 2356677777777888888888888888877653 23567777777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
..+...|++++|..+|++..+.. +.+...|..+...+.+.|++++|...+++..+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888888888888888776643 235667777777778888888888887777664
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=7.2e-10 Score=95.41 Aligned_cols=201 Identities=6% Similarity=-0.045 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+..+|..+-..+...|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+.. +.+..+|..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44557777778889999999999999998754 3468889999999999999999999999988753 236788899999
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccch
Q 013323 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSK 234 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (445)
.+...|++++|...+++..+.. +.+...+..+...+...|+. +.|...++......
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~--------------------- 155 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQP--KLALPYLQRAVELN--------------------- 155 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCH--HHHHHHHHHHHHHC---------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhC---------------------
Confidence 9999999999999999998864 33567777777888888865 88888888766542
Q ss_pred hhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 013323 235 EELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKV 314 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 314 (445)
+.+...+..+...+...|++++|...++...+.. +.+..++..+...|...|++++|.+.
T Consensus 156 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 156 -------------------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred -------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 3455677888888888999999999998877642 23567788888889999999999999
Q ss_pred HHHHHhC
Q 013323 315 FEDYICS 321 (445)
Q Consensus 315 ~~~m~~~ 321 (445)
|+...+.
T Consensus 216 ~~~~~~~ 222 (243)
T 2q7f_A 216 LDKAIDI 222 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 9988775
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.27 E-value=7.7e-10 Score=93.80 Aligned_cols=208 Identities=14% Similarity=0.028 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 013323 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187 (445)
Q Consensus 108 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 187 (445)
+++...+..+-..+.+.|++++|...|++..+.. +.+...|..+-..+.+.|++++|...|++..+.. +-+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455566666667777777777777777766543 2245666667777777777777777777766643 1133444444
Q ss_pred HHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHH
Q 013323 188 ITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHAC 267 (445)
Q Consensus 188 i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~ 267 (445)
-..+...+.. ... ..
T Consensus 80 g~~~~~~~~~--------------------------------------------------------~~~---------~~ 94 (217)
T 2pl2_A 80 SEAYVALYRQ--------------------------------------------------------AED---------RE 94 (217)
T ss_dssp HHHHHHHHHT--------------------------------------------------------CSS---------HH
T ss_pred HHHHHHhhhh--------------------------------------------------------hhh---------hc
Confidence 3333332000 000 01
Q ss_pred HhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH
Q 013323 268 AELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM 346 (445)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~ 346 (445)
...|++++|...++...+. .| +...+..+-..|...|++++|...|++..+.. .+...+..+-. .|...|+
T Consensus 95 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~----~~~~~g~ 166 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE----LYLSMGR 166 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH----HHHHHTC
T ss_pred ccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH----HHHHcCC
Confidence 1235555555555554442 23 33445555555555555555555555555544 34444444444 3445555
Q ss_pred -HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHH
Q 013323 347 -QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLM 393 (445)
Q Consensus 347 -~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m 393 (445)
++|...|++..+.. +-++..+..+...+. +.|++++|...|++.
T Consensus 167 ~~~A~~~~~~al~~~-P~~~~~~~~la~~~~--~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 167 LDEALAQYAKALEQA-PKDLDLRVRYASALL--LKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT--C--------------
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHH--HccCHHHHHHHHHHH
Confidence 55555555555433 113334444444444 556666666555543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.26 E-value=5.5e-09 Score=96.17 Aligned_cols=244 Identities=9% Similarity=0.005 Sum_probs=190.2
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP-TRDLFHSLIVGTMKGSR-LQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
...|+.+-..+.+.|++++|++.|++..+.. | +...|+.+-.++...|+ +++|...|++..+.. +-+...|+.+-
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4667888888999999999999999998754 4 56778888899999996 999999999999865 23688999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCC
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN-KIPR 197 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~ 197 (445)
.++.+.|++++|+..|++..+.. +-+...|..+-.++.+.|++++|+..|+++.+... -+...|+.+-..+.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998854 23678999999999999999999999999998642 267788888888877 5543
Q ss_pred chHHH-----HHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcc-
Q 013323 198 ADDTA-----TKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK- 271 (445)
Q Consensus 198 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g- 271 (445)
+.+ ...++...... +.+...|+.+-..+...|
T Consensus 252 --~eA~~~~el~~~~~Al~l~----------------------------------------P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 252 --DRAVLEREVQYTLEMIKLV----------------------------------------PHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp --SHHHHHHHHHHHHHHHHHS----------------------------------------TTCHHHHHHHHHHHTTTCG
T ss_pred --hHHHHHHHHHHHHHHHHHC----------------------------------------CCCHHHHHHHHHHHHccCc
Confidence 333 24444433321 456678888888888887
Q ss_pred -cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------ChhhHHHHHHHH-HhCCCCC-CHHHHHHHHH
Q 013323 272 -DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG---------DIDNGHKVFEDY-ICSEKFP-PAELYATLVE 335 (445)
Q Consensus 272 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~~~~p-~~~~~~~li~ 335 (445)
++++|.+.+..+ + .-..+...+..+...|.+.| .+++|.++|+.+ .+. .| ....|..+..
T Consensus 290 ~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGR 361 (382)
T ss_dssp GGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHH
Confidence 688999988887 3 22346678888999998874 358999999998 443 33 3345555544
No 46
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=1.6e-08 Score=90.59 Aligned_cols=235 Identities=10% Similarity=0.050 Sum_probs=161.1
Q ss_pred hhhHHHHHHHHHhc----CcH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------cCCCh-------hHHHHH
Q 013323 41 ASEYNTVVTSLTSQ----RRF----FLLRDVYDDMMLDGVQPTRDLFHSLIVGTM-------KGSRL-------QDTFFF 98 (445)
Q Consensus 41 ~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~ 98 (445)
...|...+..--+. ++. ++|..+|++..... +-+...|..+...+. +.|+. ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666654443 232 67888888887742 235667777766654 35776 889999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc-HH-HHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN-GQ-TYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 99 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
|+...+.--+-+...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999887311235668999999999999999999999999874 454 33 78888899999999999999999988753
Q ss_pred CCCCHHHHHHHHHHH-HccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccC
Q 013323 177 AGLDKFCYAGLITAH-TNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255 (445)
Q Consensus 177 ~~p~~~~~~~li~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 255 (445)
- ++...|....... ...|+. +.|..+|+...+.. +.
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~--~~A~~~~~~al~~~----------------------------------------p~ 201 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDK--SVAFKIFELGLKKY----------------------------------------GD 201 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCH--HHHHHHHHHHHHHH----------------------------------------TT
T ss_pred C-CCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC----------------------------------------CC
Confidence 2 2333333222221 123443 77777777655431 34
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDR-KSP--DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+...|..++..+.+.|++++|..+|+...... +.| ....|..++..+.+.|+.+.|..+++.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55667777777777788888888888777652 454 3456777777777788888888887777654
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.24 E-value=3.1e-10 Score=99.78 Aligned_cols=222 Identities=10% Similarity=-0.059 Sum_probs=134.4
Q ss_pred hcCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChh
Q 013323 87 MKGSRLQDTFFFRDQMKANGFL---PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163 (445)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~ 163 (445)
...|++++|...|+++.+.... .+..+|..+...+...|++++|...|++..+.. +.+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4567889999999998876321 246678888888999999999999999887753 235788888889999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhh
Q 013323 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243 (445)
Q Consensus 164 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
+|...|++..+.. +.+...+..+...+...|+. +.|...++.....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~------------------------------- 140 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRD--KLAQDDLLAFYQD------------------------------- 140 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccH--HHHHHHHHHHHHh-------------------------------
Confidence 9999998887753 12355566666666666644 6666666655543
Q ss_pred hHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 013323 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK 323 (445)
Q Consensus 244 ~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 323 (445)
.|+.......+..+...|++++|...+....... +++...+. +...+...++.++|.+.+........
T Consensus 141 ----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 141 ----------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred ----------CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 2222223333334445566666666665544321 22222332 45555555666666666665544311
Q ss_pred C--C-CHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhC
Q 013323 324 F--P-PAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSR 359 (445)
Q Consensus 324 ~--p-~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~ 359 (445)
. | +...+..+-. .|...|+ ++|...|++..+.
T Consensus 209 ~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 209 SLAEHLSETNFYLGK----YYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHH----HHHHcCCHHHHHHHHHHHHhC
Confidence 0 0 0233333333 3445555 6666666655543
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.24 E-value=2.1e-09 Score=94.34 Aligned_cols=234 Identities=10% Similarity=-0.010 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP--DVAVYNYLIS 119 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~ 119 (445)
..+...-..+...|++++|...|++..+..- .+...+..+...+...|++++|...++...+.+-.| ...+|..+-.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566778889999999999999887531 234477778888889999999999999988743212 2345888888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCCc
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI-TAHTNKIPRA 198 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~~~~ 198 (445)
.+.+.|++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+- ..+... .
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~---~ 157 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK---E 157 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH---H
Confidence 9999999999999999887743 2356788889999999999999999998887752 23455555555 444433 3
Q ss_pred hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhccc---HHH
Q 013323 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD---VQA 275 (445)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~---~~~ 275 (445)
.+.|...++...+.. +.+...+..+...+...|+ .++
T Consensus 158 ~~~A~~~~~~a~~~~----------------------------------------p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 158 YVKADSSFVKVLELK----------------------------------------PNIYIGYLWRARANAAQDPDTKQGL 197 (272)
T ss_dssp HHHHHHHHHHHHHHS----------------------------------------TTCHHHHHHHHHHHHHHSTTCSSCT
T ss_pred HHHHHHHHHHHHHhC----------------------------------------ccchHHHHHHHHHHHHcCcchhhHH
Confidence 477888777766542 3334555666666666666 666
Q ss_pred HHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 276 METLLEMLKKD-RKSPD------VYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 276 a~~~~~~m~~~-~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
|...++...+. .-.|+ ..+|..+-..|...|++++|.+.|+...+.
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666655442 11232 246677777788888888888888887765
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.21 E-value=4e-08 Score=86.25 Aligned_cols=110 Identities=9% Similarity=-0.066 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCccHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK----CKNSDQAIRIFEEMKKYEVKPNGQTYV 150 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~y~ 150 (445)
+..++..+-..+...|++++|...|+...+. -+...+..+-..|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456666666777788888888888888773 345677777777887 888888888888887765 667777
Q ss_pred HHHHHHHH----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 013323 151 CLLNACAA----AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193 (445)
Q Consensus 151 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 193 (445)
.+-..|.. .+++++|...|++..+.+ +...+..+-..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 77777887 888888888888777654 44444444444443
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=3.5e-08 Score=94.00 Aligned_cols=336 Identities=10% Similarity=-0.061 Sum_probs=211.4
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHC-----
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-----G--VQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN----- 105 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----- 105 (445)
.....||.+-..+...|+.++|++.|++-.+. + ..| ...+|+.+-.++...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667899989999999999999999875431 1 123 4568999999999999999999999887642
Q ss_pred C-CC-CCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHH---HHHcCChhhHHHHHHHHHHcCC
Q 013323 106 G-FL-PDVAVYNYLISVCGK--CKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNA---CAAAGQLDPVYAIVRDMTAAGA 177 (445)
Q Consensus 106 g-~~-p~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~---~~~~g~~~~a~~~~~~m~~~g~ 177 (445)
+ .. ....+++.+-.++.+ .+++++|...|++..+. .|+ ...+..+... +...++.++|++.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 11 234566665555554 45789999999998774 343 4444444443 445678889999998887753
Q ss_pred CCCHHHHHHHHHHHHccCCC--chHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccC
Q 013323 178 GLDKFCYAGLITAHTNKIPR--ADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR 255 (445)
Q Consensus 178 ~p~~~~~~~li~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 255 (445)
+.+..++..+-..+...+.. ..+.+.+.++...... +.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~----------------------------------------~~ 245 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA----------------------------------------PG 245 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC----------------------------------------SS
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC----------------------------------------cc
Confidence 23455555555555443321 2266777777655432 45
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc-------------------CChhhHHHHH
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHS-------------------GDIDNGHKVF 315 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~-------------------g~~~~a~~~~ 315 (445)
+...+..+-..+...|++++|...++...+. .| +..++..+-..|... +..+.|...|
T Consensus 246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5667888888899999999999999987763 34 445566555554322 2356677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcc--hhhHHHHHhhcccCCChhhHHHHHHH
Q 013323 316 EDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPR--MGSDLLLVAAGEKSGGYTTANYIWDL 392 (445)
Q Consensus 316 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~g~~~~A~~~~~~ 392 (445)
+...+... .+...+..+-. .|...|. ++|.+.|++..+....|... .+..+.. ....+.|++++|+..|++
T Consensus 324 ~~a~~~~~-~~~~~~~~lg~----~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 324 KKADEAND-NLFRVCSILAS----LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN-FQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHCT-TTCCCHHHHHH----HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHHHTSSCHHHHHHHHHH
T ss_pred HHHhhcCC-chhhhhhhHHH----HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HHHHHCCCHHHHHHHHHH
Confidence 77665421 13334444444 4677777 99999999888765433221 1111111 112367889999888887
Q ss_pred HHHCCC-----------------------CCCHHHHHHHHhhhhccCCCCCCCchh
Q 013323 393 MQARKI-----------------------TPSLPAVEAYYNGLKDREVPADDPRLV 425 (445)
Q Consensus 393 m~~~~~-----------------------~p~~~~~~~l~~~~~~~~~~~~a~~~l 425 (445)
..+..- +.+..+|..+-..+...|..++|....
T Consensus 398 al~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 398 GVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 764321 123445565666666667777766543
No 51
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=2.7e-09 Score=95.39 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=128.5
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC------
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-------GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN------ 105 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 105 (445)
.+..+|..+...+...|++++|..+|++..+. ........+..+-..+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45677888999999999999999999998773 22234556788888899999999999999988764
Q ss_pred C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHc--
Q 013323 106 G-FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY------EVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAA-- 175 (445)
Q Consensus 106 g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-- 175 (445)
+ .+....++..+...|...|++++|...|++..+. +-.| ....+..+...+...|++++|...|++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 1234668888999999999999999999988753 2222 4567888889999999999999999988764
Q ss_pred ----CCCCC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 176 ----GAGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 176 ----g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
+..|+ ..++..+...+...|+. +.|...++....
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKF--KQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Confidence 21222 34555666667777655 667777766553
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.13 E-value=3.5e-08 Score=90.84 Aligned_cols=230 Identities=9% Similarity=0.025 Sum_probs=166.6
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN-SDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
..|..+-..+.+.|++++|+..|+...+.. +-+..+|+.+-.++.+.|+ +++|+..|++.....- -+...|..+-..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 457777778888999999999999999865 2357889999999999996 9999999999987542 367889999999
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchh
Q 013323 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE 235 (445)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
+...|++++|+..|++..+.. +-+...|..+-.++.+.|+. +.+...++......
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~--~eAl~~~~~al~l~---------------------- 230 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLW--DNELQYVDQLLKED---------------------- 230 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC--TTHHHHHHHHHHHC----------------------
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhC----------------------
Confidence 999999999999999998864 22567777777777777776 77777777766542
Q ss_pred hhcchhhhhHHhhhcCcccCchhHHHHHHHHHHh-cccHHHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--
Q 013323 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE-LKDVQAM-----ETLLEMLKKDRKSP-DVYIVMQNIRCYLHSG-- 306 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g-- 306 (445)
+.+...|+.+-.++.+ .|..++| ...++...+ +.| +...|+.+-..+...|
T Consensus 231 ------------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 231 ------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGG
T ss_pred ------------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCcc
Confidence 4556677777777777 4554555 355665554 334 4567777777777777
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhh---------H-HHHHHHHHHH-HhC
Q 013323 307 DIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKG---------M-QLAQDTLVNM-NSR 359 (445)
Q Consensus 307 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g---------~-~~a~~~~~~m-~~~ 359 (445)
++++|.+.+.++ +. ...+...+..+..+ |.+.| . ++|.++++++ .+.
T Consensus 291 ~~~~a~~~~~~~-~~-~p~~~~al~~La~~----~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 291 KYPNLLNQLLDL-QP-SHSSPYLIAFLVDI----YEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp GCHHHHHHHHHH-TT-TCCCHHHHHHHHHH----HHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHh-cc-CCCCHHHHHHHHHH----HHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 577888877776 22 22345555566553 33332 3 6777777776 443
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.12 E-value=1e-08 Score=89.89 Aligned_cols=125 Identities=11% Similarity=-0.026 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN--GQTYVCLLNAC 156 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~~ 156 (445)
+...-..+...|++++|...|++..+.. +.+..+|..+..++.+.|++++|...|++..+.+-.|+ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344456677888888888888887754 12344777777788888888888888888776331121 33477777888
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHH
Q 013323 157 AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~ 207 (445)
...|++++|...|+...+... .+..++..+-..+...|+. +.|...++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~--~~A~~~~~ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNF--PLAIQYME 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCH--HHHHHHHG
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCH--HHHHHHHH
Confidence 888888888888887776421 1334444455555555433 44444444
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.12 E-value=3.2e-08 Score=101.74 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 123 (445)
..-+-..+...|.+++|.++|++.. -.....+.++. ..+++++|.++.+.. -+..+|..+-.++..
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 3445677888999999999999852 22333444544 557889988888755 347788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCC
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 197 (445)
.|++++|.+.|.+- -|...|.-++.+|.+.|++++|.+.|....+.. ++....+.+..+|++.++.
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 99999999998653 467788889999999999999999998776654 3333344578888887654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.10 E-value=1.4e-09 Score=101.73 Aligned_cols=242 Identities=9% Similarity=-0.073 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChhHHHHHHHHHHHC----CC-CCCHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTR----DLFHSLIVGTMKGSRLQDTFFFRDQMKAN----GF-LPDVA 112 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ 112 (445)
..+..+-..+...|++++|...|++..+.+. .+. ..|..+-..+...|++++|...|++..+. +- .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444555678888999999999999887632 132 46777778888899999999998887653 21 12356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCccHHHHHHHHHHHHHcCC-----------------hhhHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKY----E-VKPNGQTYVCLLNACAAAGQ-----------------LDPVYAIVR 170 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~y~~li~~~~~~g~-----------------~~~a~~~~~ 170 (445)
++..+-..|...|++++|...|++.... + ......+|..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888888899999999999998877642 1 11234578888888888888 788877777
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhH
Q 013323 171 DMTAA----GAGL-DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245 (445)
Q Consensus 171 ~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
+..+. +-.+ ...++..+-..+...|+. +.|...++.......
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~------------------------------- 254 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF--QAAIEHHQERLRIAR------------------------------- 254 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHH-------------------------------
Confidence 65432 1111 123444455555555544 556666555433210
Q ss_pred HhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----RKS-PDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 246 ~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
..+.......++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.|++...
T Consensus 255 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 255 ---EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp ---HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000111224555666666666666666666654432 100 0134555566666666666666666665543
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.10 E-value=3.5e-09 Score=98.63 Aligned_cols=158 Identities=10% Similarity=-0.081 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCC----
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE-KFPP---- 326 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~---- 326 (445)
..++..+-..+...|++++|...+++..+. +..+ ...++..+...|...|++++|...|+...... -.++
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 456888888899999999999999877642 1111 13378888899999999999999999876541 1112
Q ss_pred HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCC-CC----cchhhHHHHHhhcccCCChhhHHHHHHHHHH----C
Q 013323 327 AELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIF-LS----PRMGSDLLLVAAGEKSGGYTTANYIWDLMQA----R 396 (445)
Q Consensus 327 ~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~----~ 396 (445)
..++..+-. .|...|. ++|...+++..+..-. ++ ..++..+-..+. +.|++++|...+++..+ .
T Consensus 267 ~~~~~~la~----~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 267 AQSCYSLGN----TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT--ALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----HHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHh
Confidence 233444443 5677888 9999999887653211 11 234555555555 99999999999998763 2
Q ss_pred CCCC-CHHHHHHHHhhhhccCCCCC
Q 013323 397 KITP-SLPAVEAYYNGLKDREVPAD 420 (445)
Q Consensus 397 ~~~p-~~~~~~~l~~~~~~~~~~~~ 420 (445)
+-.| ...++..+...+...|....
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 341 GDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCCcchhHHHHHHHHHHHHhhHhHH
Confidence 2222 23445556666777776643
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.10 E-value=8e-08 Score=98.83 Aligned_cols=282 Identities=11% Similarity=0.059 Sum_probs=143.2
Q ss_pred hcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 013323 53 SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 132 (445)
..+++++|.++.++. -+..+|..+-.++.+.|++++|.+.|... -|...|..++.+|.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555555533 12445555555555555555555555332 344455555555555555555555
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
+|..-.+.. +++...+.+..+|++.+++++..... . .|+...|..+-..|...|+. +.|..+|......
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~Y--eeA~~~Y~kA~ny 1224 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMY--DAAKLLYNNVSNF 1224 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHhhhHH
Confidence 555444322 22222223555555555554322221 1 23334444444444444443 5555555543210
Q ss_pred cCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH
Q 013323 213 KGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDV 292 (445)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 292 (445)
... +.....+.....+....++ ..+..+|..+-.+|...|++..|...... +..+.
T Consensus 1225 ---~rL------------A~tLvkLge~q~AIEaarK----A~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~ 1280 (1630)
T 1xi4_A 1225 ---GRL------------ASTLVHLGEYQAAVDGARK----ANSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 1280 (1630)
T ss_pred ---HHH------------HHHHHHhCCHHHHHHHHHH----hCCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCH
Confidence 000 0000000000001111111 33456777778888888888877765443 34466
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCC------Cc
Q 013323 293 YIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFL------SP 365 (445)
Q Consensus 293 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p------~~ 365 (445)
..+..++..|.+.|.+++|+++++.-.... +-....|+-|-..+ +-.+.+. .++.+.|..- -+++| +.
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy--aKy~peklmEhlk~f~~r--ini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY--SKFKPQKMREHLELFWSR--VNIPKVLRAAEQA 1355 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH--HhCCHHHHHHHHHHHHHh--cccchHhHHHHHH
Confidence 677789999999999999999997765442 12233443333321 1223333 4455554422 12222 34
Q ss_pred chhhHHHHHhhcccCCChhhHHH
Q 013323 366 RMGSDLLLVAAGEKSGGYTTANY 388 (445)
Q Consensus 366 ~~~~~ll~~~~~~~~g~~~~A~~ 388 (445)
..|.-+...|. +.|+++.|..
T Consensus 1356 ~lW~elv~LY~--~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1356 HLWAELVFLYD--KYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHH--hcccHHHHHH
Confidence 56777777666 9999999973
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.08 E-value=4.6e-09 Score=94.78 Aligned_cols=241 Identities=11% Similarity=-0.017 Sum_probs=146.5
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN----GFLP-DVAV 113 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~ 113 (445)
.+...-..+...|++++|...|++..+... .+ ...|..+...+...|++++|...+++..+. +-.| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344455677888999999999999887532 13 356777888888999999999998886542 2122 2567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-ccHHHHHHHHHHHHHcCC--------------------hhhHHHH
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKY----EVK-PNGQTYVCLLNACAAAGQ--------------------LDPVYAI 168 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~y~~li~~~~~~g~--------------------~~~a~~~ 168 (445)
+..+-..+...|++++|...+++..+. +-. ....++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 888888999999999999998886542 111 114477888888888888 7888777
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhh
Q 013323 169 VRDMTAA----GAGL-DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTA 243 (445)
Q Consensus 169 ~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
+++.... +-.| ...++..+-..+...|+. +.+...++.......
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~----------------------------- 214 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF--RDAVIAHEQRLLIAK----------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHH-----------------------------
Confidence 7765432 1111 123444444555555544 556555554432100
Q ss_pred hHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 013323 244 EYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDY 318 (445)
Q Consensus 244 ~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 318 (445)
..+.......++..+...+...|++++|...++...+. +..+ ...++..+...|...|++++|...++..
T Consensus 215 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 215 -----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp -----HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 00000111234555666666666666666666654431 1111 1334555566666666666666666655
Q ss_pred Hh
Q 013323 319 IC 320 (445)
Q Consensus 319 ~~ 320 (445)
..
T Consensus 290 ~~ 291 (338)
T 3ro2_A 290 LA 291 (338)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.07 E-value=7.8e-09 Score=96.23 Aligned_cols=281 Identities=11% Similarity=-0.028 Sum_probs=199.4
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN----GFLP 109 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p 109 (445)
.+....+...-..+...|++++|...|++..+.+. .+ ...|..+-..+...|++++|...+++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34556666777888999999999999999988632 23 346778888999999999999999986542 2222
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCccHHHHHHHHHHHHHcCC--------------------hh
Q 013323 110 -DVAVYNYLISVCGKCKNSDQAIRIFEEMKKY----E-VKPNGQTYVCLLNACAAAGQ--------------------LD 163 (445)
Q Consensus 110 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~y~~li~~~~~~g~--------------------~~ 163 (445)
...++..+-..|...|++++|...+++..+. + ......++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2567888899999999999999999887642 1 11124578888999999999 99
Q ss_pred hHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhc
Q 013323 164 PVYAIVRDMTAA----GAGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238 (445)
Q Consensus 164 ~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (445)
+|...+++..+. +-.|. ..++..+-..+...|+. +.|...++.......
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~------------------------ 218 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF--RDAVIAHEQRLLIAK------------------------ 218 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH--HHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHH------------------------
Confidence 999998886542 21122 34566666777777765 888888877554210
Q ss_pred chhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhhHHH
Q 013323 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSPD-VYIVMQNIRCYLHSGDIDNGHK 313 (445)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~ 313 (445)
..+.......++..+...+...|++++|...++...+. +..+. ..++..+...|...|++++|.+
T Consensus 219 ----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 219 ----------EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp ----------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 00000122347888888999999999999999876542 21111 4578888999999999999999
Q ss_pred HHHHHHhCC-CCCC----HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhC
Q 013323 314 VFEDYICSE-KFPP----AELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSR 359 (445)
Q Consensus 314 ~~~~m~~~~-~~p~----~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~ 359 (445)
.|+...... -.++ ..++..+-. .|...|+ ++|.+.+++..+.
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGN----AYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHH
Confidence 999877541 1112 233444433 5677888 9999998886543
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.06 E-value=1.4e-07 Score=84.53 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcC----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHH
Q 013323 77 DLFHSLIVGTMKG----SRL----QDTFFFRDQMKANGFLPDVAVYNYLISVCGK-------CKNS-------DQAIRIF 134 (445)
Q Consensus 77 ~~~~~ll~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~-------~~a~~~~ 134 (445)
..|...+....+. ++. ++|..+|++..+.. +-+...|..+...+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4566666655443 222 56667777776643 2356677776666653 4664 6777777
Q ss_pred HHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHccCCCchHHHHHHHHHH
Q 013323 135 EEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KF-CYAGLITAHTNKIPRADDTATKIIELV 209 (445)
Q Consensus 135 ~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~~~a~~~~~~~ 209 (445)
++.... +.| +...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|+. +.|..+|+..
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a 160 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGI--KSGRMIFKKA 160 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCH--HHHHHHHHHH
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCH--HHHHHHHHHH
Confidence 777652 123 3456777777777777777777777777663 232 11 344444444444433 4444444443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.05 E-value=3.2e-09 Score=99.27 Aligned_cols=278 Identities=12% Similarity=-0.052 Sum_probs=188.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CccHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV----AVYNYLISVCGKCKNSDQAIRIFEEMKKY----EV-KPNGQT 148 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~ 148 (445)
.+..+-..+...|++++|...|++..+.+- .+. .+|..+-..|...|++++|...|++..+. +- .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344555678889999999999999998642 232 57888999999999999999999987642 11 224567
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCC----------Cc-----hHHHHHHHHH
Q 013323 149 YVCLLNACAAAGQLDPVYAIVRDMTAA----GAGL-DKFCYAGLITAHTNKIP----------RA-----DDTATKIIEL 208 (445)
Q Consensus 149 y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~----------~~-----~~~a~~~~~~ 208 (445)
|..+-..|...|++++|...+++..+. +-.| ...++..+-..+...|+ .. .+.+...++.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999987653 2112 23455666666666664 10 2555555544
Q ss_pred HHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCC
Q 013323 209 VEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288 (445)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 288 (445)
..... ...+.......++..+-..+...|++++|...+++..+...
T Consensus 209 al~~~----------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 209 NLKLM----------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHH----------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 33210 00000022335677888889999999999999987764310
Q ss_pred -CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHH
Q 013323 289 -SPD----VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEK-FPP----AELYATLVEGAMFGYTPKGM-QLAQDTLVNMN 357 (445)
Q Consensus 289 -~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~ 357 (445)
.++ ..++..+...|...|++++|.+.|++...... ..+ ..++..+-. .|...|+ ++|.+.+++..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN----TYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHH
Confidence 112 23788889999999999999999998775411 111 234444444 5677787 99999998876
Q ss_pred hCCCC-CC----cchhhHHHHHhhcccCCChhhHHHHHHHHHHC
Q 013323 358 SRNIF-LS----PRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR 396 (445)
Q Consensus 358 ~~~~~-p~----~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~ 396 (445)
+..-. ++ ..++..+...+. +.|++++|...|++..+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHS--AIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHH
Confidence 54211 11 224555555555 999999999999988753
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.04 E-value=6.6e-09 Score=93.76 Aligned_cols=276 Identities=12% Similarity=-0.048 Sum_probs=184.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCc-cHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD----VAVYNYLISVCGKCKNSDQAIRIFEEMKKY----EVKP-NGQTY 149 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~y 149 (445)
+...-..+...|++++|...|++..+... .+ ...+..+...+...|++++|...+++.... +-.| ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34445567889999999999999988641 22 467889999999999999999999886542 2122 35678
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCC-------------Cc-----hHHHHHHH
Q 013323 150 VCLLNACAAAGQLDPVYAIVRDMTAAG-AGLD----KFCYAGLITAHTNKIP-------------RA-----DDTATKII 206 (445)
Q Consensus 150 ~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~~~-------------~~-----~~~a~~~~ 206 (445)
..+...+...|++++|...+++..+.. -.++ ..++..+-..+...|+ .. .+.+...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999876531 0122 3355556666666554 00 24455555
Q ss_pred HHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC
Q 013323 207 ELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD 286 (445)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 286 (445)
+...... ...+..+....++..+...+...|++++|...++...+.
T Consensus 167 ~~a~~~~----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 167 EENLSLV----------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHH----------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4432210 000000223346778888899999999999999876542
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCC----HHHHHHHHHhHhhcCChhhH-HHHHHHHHH
Q 013323 287 ----RKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE-KFPP----AELYATLVEGAMFGYTPKGM-QLAQDTLVN 355 (445)
Q Consensus 287 ----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~----~~~~~~li~~~~~~~~~~g~-~~a~~~~~~ 355 (445)
+..+ ...++..+...+...|++++|...+++..... -.++ ..++..+-. .+...|. ++|...+++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN----TYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTCHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----HHHHhcCHHHHHHHHHH
Confidence 1111 23378888899999999999999999876541 1112 233333333 4677787 999999888
Q ss_pred HHhCCCC-CC----cchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 356 MNSRNIF-LS----PRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 356 m~~~~~~-p~----~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
..+..-. .+ ..++..+...+. +.|++++|...+++..+
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYT--ALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHH
Confidence 7643211 11 224455555555 89999999999998875
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.02 E-value=7.7e-09 Score=92.41 Aligned_cols=137 Identities=8% Similarity=0.013 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-------
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKD------RKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS------- 321 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 321 (445)
....+..+...+...|++++|...++...+. +..| ...++..+...|...|++++|.+.|++..+.
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456778888899999999999999987653 2234 3457888999999999999999999998753
Q ss_pred CCCCCHHHHHHHHHh---HhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 322 EKFPPAELYATLVEG---AMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 322 ~~~p~~~~~~~li~~---~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
...+........... ....+...+. ..+...+....... ..+..++..+...+. +.|++++|...|++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYR--RQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
Confidence 111111111111111 0001122222 33334444433322 123345666666666 99999999999988764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.02 E-value=9.3e-08 Score=78.34 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
++.+|..+-..|.+.|++++|++.|++..+.. +-+..+|..+...+.+.|++++|...++....... -+...+..+-.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45666677777777777777777777766542 12456666677777777777777777776665432 23444444444
Q ss_pred HHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHh
Q 013323 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269 (445)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~ 269 (445)
.+...++. +.+...+....... +.+...+..+-..+.+
T Consensus 82 ~~~~~~~~--~~a~~~~~~a~~~~----------------------------------------~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 82 ANFMIDEK--QAAIDALQRAIALN----------------------------------------TVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHHTTCH--HHHHHHHHHHHHHC----------------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCH--HHHHHHHHHHHHhC----------------------------------------ccchHHHHHHHHHHHH
Confidence 44444443 55555555544321 3455567777788888
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 270 LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 270 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
.|++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|.+.|++..+.
T Consensus 120 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 120 MGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 889999998888877642 235667888888888999999999999887764
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.01 E-value=3.9e-08 Score=91.05 Aligned_cols=298 Identities=9% Similarity=-0.036 Sum_probs=190.5
Q ss_pred HHhcCcHhHHHHHHHHHHHC--CCCCCHH--HHHHHHHHH--hcCCChhHHH-----------HHHHHHHHCCCCCCHH-
Q 013323 51 LTSQRRFFLLRDVYDDMMLD--GVQPTRD--LFHSLIVGT--MKGSRLQDTF-----------FFRDQMKANGFLPDVA- 112 (445)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~--g~~p~~~--~~~~ll~~~--~~~~~~~~a~-----------~~~~~m~~~g~~p~~~- 112 (445)
+.+.+++++|..++++..+. .++.|.. .|-.++..- .-.++++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45689999999999998763 3434443 333333321 1123333333 6666665421 1111
Q ss_pred -----HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHc--CCC--
Q 013323 113 -----VYNYLISVCGKCKNSDQAIRIFEEMKKY----EVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAA--GAG-- 178 (445)
Q Consensus 113 -----~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-- 178 (445)
.+-..-..+...|++++|...|++.... +-.+ ...+|..+-..|...|++++|...+++..+. ...
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1222445677899999999999998763 1112 3567889999999999999999999988652 111
Q ss_pred -C-CHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCc
Q 013323 179 -L-DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRL 256 (445)
Q Consensus 179 -p-~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 256 (445)
| ...++..+-..+...|+. +.|...++....... ..+.....
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~----------------------------------~~~~~~~~ 223 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQY--EDAISHFQKAYSMAE----------------------------------AEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH----------------------------------HTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHH----------------------------------HcCChHHH
Confidence 1 134566677778888866 888888876554210 00000222
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCHH--
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE-KFPPAE-- 328 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~-- 328 (445)
..++..+-..|...|++++|...+++..+. +..| ...++..+-..|.+.|++++|...+++..+.. -..+..
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 346888888999999999999999877652 3323 45678889999999999999999999876541 111222
Q ss_pred -HHHHHHHhHhhcCChhh----HHHHHHHHHHHHhCCCCCCc-chhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 329 -LYATLVEGAMFGYTPKG----MQLAQDTLVNMNSRNIFLSP-RMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 329 -~~~~li~~~~~~~~~~g----~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
.+..+-. .|...| .++|..++++. +..|+. ..+..+-..+. +.|++++|...|++..+
T Consensus 304 ~~~~~l~~----~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~--~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKS----LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYH--ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHH----HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
Confidence 2233222 344444 26666666654 333332 24444555555 99999999999998873
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.01 E-value=1.9e-07 Score=88.88 Aligned_cols=340 Identities=9% Similarity=-0.061 Sum_probs=169.7
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHh--cCCChhHHHHHHHHHHHCCCCCC
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-----G-VQP-TRDLFHSLIVGTM--KGSRLQDTFFFRDQMKANGFLPD 110 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~ 110 (445)
...+|+.+-..|...|++++|...+++..+. + ..+ ...++...-.++. ..+++++|...|+...+.. |+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~ 170 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PK 170 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CC
Confidence 4678999999999999999999999877542 1 112 2345554444443 3467999999999998754 54
Q ss_pred -HHHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCHH
Q 013323 111 -VAVYNYLISV---CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA----AGQLDPVYAIVRDMTAAGAGLDKF 182 (445)
Q Consensus 111 -~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ 182 (445)
...+..+..+ +...++.++|++.|++..+.. +.+..++..+...+.. .+++++|.+++++..... +.+..
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~ 248 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTD 248 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHH
Confidence 4455544444 445677888999888877643 2345566665555554 467789999999887754 34577
Q ss_pred HHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcc--------------cchhhhcchhhhhHHhh
Q 013323 183 CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMG--------------VSKEELYNLPTAEYVHR 248 (445)
Q Consensus 183 ~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 248 (445)
++..+-..+...|+. +.+...++.......-...... .. ...... .................
T Consensus 249 ~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~-~l-g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 324 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEP--DKAIELLKKALEYIPNNAYLHC-QI-GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324 (472)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHHHHHHSTTCHHHHH-HH-HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCch--HHHHHHHHHHHHhCCChHHHHH-HH-HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 788888888888866 8888888876654211110000 00 000000 00000000000000000
Q ss_pred h-cCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCChhhHHHHHHHHHhCCCC
Q 013323 249 R-GGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVY--IVMQNIR-CYLHSGDIDNGHKVFEDYICSEKF 324 (445)
Q Consensus 249 ~-~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~ 324 (445)
+ ....+.+..++..+-..+...|++++|...|++..+....|... .+..+.. .....|+.++|...|.+..+. .
T Consensus 325 ~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~ 402 (472)
T 4g1t_A 325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--N 402 (472)
T ss_dssp HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--C
T ss_pred HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 0 01112333445555555566666666666666555433222111 1111111 123445566666666555443 2
Q ss_pred CCHHHHHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCC-CCCCHH
Q 013323 325 PPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK-ITPSLP 403 (445)
Q Consensus 325 p~~~~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~ 403 (445)
|+.......+ ..+.++++...+.+ +.++.+|..+-.++. ..|++++|.+.|++-.+.+ ..|+..
T Consensus 403 ~~~~~~~~~~------------~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~--~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 403 QKSREKEKMK------------DKLQKIAKMRLSKN-GADSEALHVLAFLQE--LNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp CCCHHHHHHH------------HHHHHHHHHHHHHC-C-CTTHHHHHHHHHH--HHHHCC--------------------
T ss_pred cccHHHHHHH------------HHHHHHHHHHHHhC-CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 2222111111 22333444433333 234567776666666 8999999999999988643 345554
Q ss_pred H
Q 013323 404 A 404 (445)
Q Consensus 404 ~ 404 (445)
+
T Consensus 468 ~ 468 (472)
T 4g1t_A 468 S 468 (472)
T ss_dssp -
T ss_pred h
Confidence 4
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.99 E-value=2.8e-08 Score=94.77 Aligned_cols=215 Identities=8% Similarity=-0.149 Sum_probs=163.1
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 013323 57 FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL-QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFE 135 (445)
Q Consensus 57 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 135 (445)
++++++.++..... -+.+...|..+-..+...|++ ++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666655443 224677888888999999999 99999999998864 2358899999999999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHHHc---------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCCc
Q 013323 136 EMKKYEVKPNGQTYVCLLNACAAA---------GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK--------IPRA 198 (445)
Q Consensus 136 ~m~~~g~~p~~~~y~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~~ 198 (445)
+..+. .|+...|..+-..+... |++++|...|++..+.. +-+...+..+-.++... |+.
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~- 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS- 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH-
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH-
Confidence 99886 47778899999999999 99999999999998864 23567777777777655 433
Q ss_pred hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHH
Q 013323 199 DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMET 278 (445)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~ 278 (445)
+.|...++........ ...+...|..+-.++...|++++|..
T Consensus 238 -~~A~~~~~~al~~~p~-------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 238 -QQALSAYAQAEKVDRK-------------------------------------ASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp -HHHHHHHHHHHHHCGG-------------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHHhCCC-------------------------------------cccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777766553100 01466678888888888888888888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 013323 279 LLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFED 317 (445)
Q Consensus 279 ~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 317 (445)
.|+...+. .| +...+..+-..+...|++++|.+.+..
T Consensus 280 ~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 280 GFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88877663 34 455677777788888888887765543
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.94 E-value=8.3e-08 Score=91.46 Aligned_cols=210 Identities=8% Similarity=-0.061 Sum_probs=164.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHH
Q 013323 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS-DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIV 169 (445)
Q Consensus 91 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~ 169 (445)
.++++...+++..... +.+...|..+-..+...|++ ++|++.|++..+.. +-+...|..+-..|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777665543 34788999999999999999 99999999988753 234789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc---------CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcch
Q 013323 170 RDMTAAGAGLDKFCYAGLITAHTNK---------IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNL 240 (445)
Q Consensus 170 ~~m~~~g~~p~~~~~~~li~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (445)
++..+. .|+...+..+-..+... |+. +.|...++......
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~--------------------------- 209 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHV--MDSVRQAKLAVQMD--------------------------- 209 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHH--HHHHHHHHHHHHHC---------------------------
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhH--HHHHHHHHHHHHhC---------------------------
Confidence 999886 47777788888888777 654 77888887766542
Q ss_pred hhhhHHhhhcCcccCchhHHHHHHHHHHhc--------ccHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCh
Q 013323 241 PTAEYVHRRGGFLSRLLTVYHVAFHACAEL--------KDVQAMETLLEMLKKDRKSP----DVYIVMQNIRCYLHSGDI 308 (445)
Q Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~ 308 (445)
+.+...|..+-.++... |++++|...|+...+. .| +...|..+-.+|...|++
T Consensus 210 -------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 210 -------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCH
Confidence 45667888888889888 9999999999988874 34 677899999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHH
Q 013323 309 DNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTL 353 (445)
Q Consensus 309 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~ 353 (445)
++|.+.|+...+..- -+...+..+-. .+...|. ++|.+.+
T Consensus 275 ~~A~~~~~~al~l~p-~~~~a~~~l~~----~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 275 GEALEGFSQAAALDP-AWPEPQQREQQ----LLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 999999999887631 13444555544 3455565 6666544
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.93 E-value=1.9e-07 Score=76.50 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+=..+.+.|++++|++.|++..+.. +-+..+|..+-..+.+.|++++|...++...... +.+...+..+-.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44556666666666666666666666655532 1244455556666666666666666666665543 123445555555
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.+...++++.+...+.+..... +-+...+..+-..+.+.|++++|.+.|++..+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 5666666666666666555432 12345555566666666666666666665554
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.92 E-value=1.5e-07 Score=76.67 Aligned_cols=65 Identities=11% Similarity=-0.056 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.
T Consensus 109 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33455666666777777777777777766542 234566777777777888888888877776553
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.90 E-value=1.5e-07 Score=76.76 Aligned_cols=166 Identities=11% Similarity=-0.010 Sum_probs=139.9
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
...|..+...+...|++++|.+.|+...+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456777888999999999999999887643 3467788889999999999999999999998764 3467889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchH
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADD 200 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 200 (445)
+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+. +
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~--~ 161 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRH--E 161 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH--H
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCH--H
Confidence 999999999999999988753 3467889999999999999999999999998864 34678888888889888866 8
Q ss_pred HHHHHHHHHHHh
Q 013323 201 TATKIIELVEQS 212 (445)
Q Consensus 201 ~a~~~~~~~~~~ 212 (445)
.|...++.....
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 899888876654
No 72
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=1.1e-07 Score=72.99 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
.+|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 357788889999999999999999998754 2467778888888999999999999999998765 34677888999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
.+.|++++|..+++++.... +.+..++..+...+.+.|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999988753 235778889999999999999999999998765
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.84 E-value=4.8e-08 Score=85.77 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 013323 256 LLTVYHVAFHACAELKDVQAMETLLEMLKK 285 (445)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 285 (445)
...++..+...+...|++++|...++...+
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999987764
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.83 E-value=1.2e-06 Score=80.76 Aligned_cols=313 Identities=9% Similarity=-0.069 Sum_probs=194.9
Q ss_pred CCChhhHHHHHHHH--HhcCcHhHHHHHHHHHHHC--CCCCCHH--HHHHHHHHH--hcCCChhH---------HHHHHH
Q 013323 38 ANNASEYNTVVTSL--TSQRRFFLLRDVYDDMMLD--GVQPTRD--LFHSLIVGT--MKGSRLQD---------TFFFRD 100 (445)
Q Consensus 38 ~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~p~~~--~~~~ll~~~--~~~~~~~~---------a~~~~~ 100 (445)
.|+...=+.+-..| .+.+++++|.+++++..+. .++.|.. .|-.++..- .-.+..+. ..+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555656666666 7899999999999987662 3333333 334443321 11122222 226666
Q ss_pred HHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCc----cHHHHHHHHHHHHHcCChhhHHHHHHH
Q 013323 101 QMKANGFLPDV----AVYNYLISVCGKCKNSDQAIRIFEEMKKYE-VKP----NGQTYVCLLNACAAAGQLDPVYAIVRD 171 (445)
Q Consensus 101 ~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p----~~~~y~~li~~~~~~g~~~~a~~~~~~ 171 (445)
.+.....+.+. ..|-..-..+...|++++|...|++....- -.+ ...+|..+-..|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 66542211111 122233345678999999999999987541 112 256788899999999999999999998
Q ss_pred HHHc--CC---CC-CHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhH
Q 013323 172 MTAA--GA---GL-DKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245 (445)
Q Consensus 172 m~~~--g~---~p-~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
..+. .. .+ ...++..+-..+...|+. +.|...++......
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~--~~A~~~~~~al~~~-------------------------------- 212 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY--DKALPHLEAALELA-------------------------------- 212 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHH--------------------------------
Confidence 7652 11 11 245566677778888866 88888887655421
Q ss_pred HhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 246 ~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
...+.......++..+-..+...|++++|...+++..+. +.+....++..+-..|.+.|++++|...++...+.
T Consensus 213 --~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 213 --MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp --HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 000100122346778888899999999999999977651 22223667888999999999999999999998765
Q ss_pred CC---CCCH-HHHHHHHHhHhhcCChhh---H-HHHHHHHHHHHhCCCCCCcc-hhhHHHHHhhcccCCChhhHHHHHHH
Q 013323 322 EK---FPPA-ELYATLVEGAMFGYTPKG---M-QLAQDTLVNMNSRNIFLSPR-MGSDLLLVAAGEKSGGYTTANYIWDL 392 (445)
Q Consensus 322 ~~---~p~~-~~~~~li~~~~~~~~~~g---~-~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~g~~~~A~~~~~~ 392 (445)
.. .|.. ..+.. +.. .|...+ . .+|...+++ .+..|+.. .+..+-..+. +.|++++|...|++
T Consensus 291 ~~~~~~~~~~~~~~~-l~~---ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~--~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 291 ITARSHKFYKELFLF-LQA---VYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE--SSCHFEQAAAFYRK 361 (378)
T ss_dssp CCTTCCSCHHHHHHH-HHH---HHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHH---HHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH--HCCCHHHHHHHHHH
Confidence 21 1222 22322 222 233333 2 556666554 33333322 3334444444 99999999999988
Q ss_pred HHH
Q 013323 393 MQA 395 (445)
Q Consensus 393 m~~ 395 (445)
..+
T Consensus 362 al~ 364 (378)
T 3q15_A 362 VLK 364 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.80 E-value=3.5e-06 Score=77.43 Aligned_cols=271 Identities=13% Similarity=-0.057 Sum_probs=178.5
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhcCCChhHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 013323 47 VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD----LFHSLIVGTMKGSRLQDTFFFRDQMKAN----GFL-PDVAVYNYL 117 (445)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~l 117 (445)
.-..+...|++++|...+++.....-..+.. .++.+-..+...|++++|...+++..+. |.. ....+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345667899999999999987754222322 3555566778899999999999987642 211 012346777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC----CCC--c-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC--C--CHHHHHH
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKY----EVK--P-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG--L--DKFCYAG 186 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~~ 186 (445)
-..+...|++++|...+++.... +.. | ....+..+-..+...|++++|...+++.....-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 88899999999999999887642 222 3 3456677888899999999999999998764221 1 2355666
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHH--HHHH
Q 013323 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY--HVAF 264 (445)
Q Consensus 187 li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~li 264 (445)
+-..+...|+. +.|...++......... +. ++..... ....
T Consensus 180 la~~~~~~g~~--~~A~~~l~~a~~~~~~~----------------------------------~~-~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 180 LIQCSLARGDL--DNARSQLNRLENLLGNG----------------------------------KY-HSDWISNANKVRV 222 (373)
T ss_dssp HHHHHHHHTCH--HHHHHHHHHHHHHHTTS----------------------------------CC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHHHhcc----------------------------------Cc-chhHHHHHHHHHH
Confidence 66777777866 88888888765431100 00 0000011 1233
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCCHH-HHHHHHHh
Q 013323 265 HACAELKDVQAMETLLEMLKKDRKSP---DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS----EKFPPAE-LYATLVEG 336 (445)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~-~~~~li~~ 336 (445)
..+...|+.++|...+.........+ ....+..+...+...|++++|...++..... |..++.. .+..+-.
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~- 301 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ- 301 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH-
Confidence 44778999999999998876533211 1235667788899999999999999987653 2111121 2222222
Q ss_pred HhhcCChhhH-HHHHHHHHHHHh
Q 013323 337 AMFGYTPKGM-QLAQDTLVNMNS 358 (445)
Q Consensus 337 ~~~~~~~~g~-~~a~~~~~~m~~ 358 (445)
.+...|+ ++|...+++...
T Consensus 302 ---~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 302 ---LYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHhCCHHHHHHHHHHHHH
Confidence 4567777 888888887654
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.77 E-value=5.3e-07 Score=83.38 Aligned_cols=233 Identities=11% Similarity=0.007 Sum_probs=167.2
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHC--CC---C-CCHHHHHH
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLD----GVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN--GF---L-PDVAVYNY 116 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~---~-p~~~~~~~ 116 (445)
-..+...|++++|.+.|++..+. +-.+ ...+|..+-..+...|+++.|...+++..+. .. . ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34567789999999999998763 1112 2346778888899999999999999987753 11 1 12467888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHc----CC-CCCHHHHHH
Q 013323 117 LISVCGKCKNSDQAIRIFEEMKKY----EVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAA----GA-GLDKFCYAG 186 (445)
Q Consensus 117 ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 186 (445)
+-..|...|++++|...|++..+. +-.+ ...+|..+-..|...|++++|...|++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999999999999887642 1111 2357888999999999999999999998762 33 334667777
Q ss_pred HHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 187 LITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 187 li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
+-..+.+.|+. +.|...++....... ..+. +.....+..+-..
T Consensus 270 l~~~~~~~g~~--~~A~~~~~~al~~~~----------------------------------~~~~-~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 270 ITQIHYKLGKI--DKAHEYHSKGMAYSQ----------------------------------KAGD-VIYLSEFEFLKSL 312 (383)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHHHH----------------------------------HHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH--HHHHHHHHHHHHHHH----------------------------------HcCC-HHHHHHHHHHHHH
Confidence 88888888866 888888877554210 0000 1112235667777
Q ss_pred HHhccc---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 267 CAELKD---VQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 267 ~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
+...|+ +++|..+++.. +..|+ ...+..+-..|...|++++|.+.|+...+
T Consensus 313 ~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 313 YLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888 66666666554 34443 34677788999999999999999998765
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.72 E-value=2.2e-07 Score=81.52 Aligned_cols=134 Identities=11% Similarity=0.110 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHC------C-
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLD------GVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN------G- 106 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g- 106 (445)
..+|..+-..+...|++++|.+.|++..+. +-.| ...+|..+-..+...|++++|...|++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445555555666666666666666555442 1112 2334555555566666666666666655442 0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 107 FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY------EVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
-+....++..+...|...|++++|..+|++.... +-.| ...++..+...+...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0122445555556666666666666666655432 1112 234555555666666666666666665544
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.70 E-value=1.1e-06 Score=87.40 Aligned_cols=162 Identities=9% Similarity=0.014 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNA 155 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~ 155 (445)
..|+.|-..+.+.|++++|.+.|++..+.. +-+..+|+.+-.+|.+.|++++|+..|++..+. .| +...|..+-..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 345555555555666666666665555532 113455555555555566666666555555543 22 24455555555
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchh
Q 013323 156 CAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE 235 (445)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
+.+.|++++|.+.|++..+..
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~----------------------------------------------------------- 107 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN----------------------------------------------------------- 107 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-----------------------------------------------------------
Confidence 555555555555555444321
Q ss_pred hhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHH
Q 013323 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKV 314 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 314 (445)
+.+...|+.+-..+...|++++|...|++..+. .| +...|..+..+|...|++++|.+.
T Consensus 108 ------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 108 ------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 334556777888888889999999999887763 45 466788889999999999999888
Q ss_pred HHHHHh
Q 013323 315 FEDYIC 320 (445)
Q Consensus 315 ~~~m~~ 320 (445)
|++..+
T Consensus 168 ~~kal~ 173 (723)
T 4gyw_A 168 MKKLVS 173 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.70 E-value=6.7e-06 Score=75.51 Aligned_cols=269 Identities=9% Similarity=-0.068 Sum_probs=175.1
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-ccHHHHHHHHH
Q 013323 84 VGTMKGSRLQDTFFFRDQMKANGFLPDV----AVYNYLISVCGKCKNSDQAIRIFEEMKKY----EVK-PNGQTYVCLLN 154 (445)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~y~~li~ 154 (445)
..+...|++++|...+++.....-..+. .+++.+-..+...|++++|...+++.... |.. ....++..+-.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3456789999999999998875422222 25667778888999999999999887642 211 11234667778
Q ss_pred HHHHcCChhhHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccch
Q 013323 155 ACAAAGQLDPVYAIVRDMTAA----GAG--LD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAEN 227 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (445)
.+...|++++|...+++..+. +.. |. ...+..+-..+...|+. +.+...++.......-.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~----------- 168 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL--DEAEASARSGIEVLSSY----------- 168 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTTTS-----------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhhcc-----------
Confidence 889999999999999987652 322 32 34455566677777866 88888888765432100
Q ss_pred hhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHH
Q 013323 228 EMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYIVM----QNIRC 301 (445)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~ 301 (445)
|. .....+|..+-..+...|++++|...++......-.++ ..... .....
T Consensus 169 -----------------------~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 169 -----------------------QP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp -----------------------CG-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred -----------------------Cc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 00 11234677788889999999999999998764311111 12111 23345
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhC----CCCCCcc-hhhHHH
Q 013323 302 YLHSGDIDNGHKVFEDYICSEKFPP---AELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSR----NIFLSPR-MGSDLL 372 (445)
Q Consensus 302 ~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~----~~~p~~~-~~~~ll 372 (445)
+...|++++|...++........++ ...+..+.. .+...|. ++|...+++.... +..++.. .+..+-
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~----~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR----AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 7799999999999988765432211 123333333 4567777 8999988877543 2111111 333333
Q ss_pred HHhhcccCCChhhHHHHHHHHHH
Q 013323 373 LVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 373 ~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
.++. ..|+.++|...+++...
T Consensus 301 ~~~~--~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYW--QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHH--HHTCHHHHHHHHHHHHH
T ss_pred HHHH--HhCCHHHHHHHHHHHHH
Confidence 3344 89999999999988763
No 80
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.69 E-value=4.2e-06 Score=73.43 Aligned_cols=214 Identities=9% Similarity=0.031 Sum_probs=143.5
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
.+++.-.|+.... ..-.|....+..+...+ ..+ |...|++..+.+ .++..++..+-.++...|++
T Consensus 52 ~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~ 116 (310)
T 3mv2_B 52 AKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDL 116 (310)
T ss_dssp HHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 3666666665531 11234443444444333 222 677788777665 46666667888899999999
Q ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHc--cCCCch
Q 013323 128 DQAIRIFEEMKKYEV-KPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-----DKFCYAGLITAHTN--KIPRAD 199 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~--~~~~~~ 199 (445)
++|++++.+....|- .-+...+...+..+.+.|+.+.|.+.++.|.+. .| +..+...+..++.. .|....
T Consensus 117 eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~ 194 (310)
T 3mv2_B 117 DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETA 194 (310)
T ss_dssp HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccH
Confidence 999999999876553 236788899999999999999999999999875 45 35666666666332 232233
Q ss_pred HHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHH
Q 013323 200 DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETL 279 (445)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~ 279 (445)
..+..+|+.+... .|+..+-..++.++.+.|++++|+++
T Consensus 195 q~A~~~f~El~~~-----------------------------------------~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 195 TSNFYYYEELSQT-----------------------------------------FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp THHHHHHHHHHTT-----------------------------------------SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------------------------------------CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 7788888887653 34322333444478888999999999
Q ss_pred HHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 280 LEMLKKD-----RK---SP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 280 ~~~m~~~-----~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
++.+.+. .. .| |..++..+|......|+ +|.+++.++.+.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 8876542 11 24 56677566666666676 778888888775
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.69 E-value=1.1e-05 Score=79.46 Aligned_cols=136 Identities=8% Similarity=0.079 Sum_probs=103.7
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHCC-CCCCHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR---LQDTFFFRDQMKANG-FLPDVAV 113 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~~ 113 (445)
.-|...|..+|..+.+.+.++.+..+|+.+... ++.+...|...+..-.+.++ .+.+..+|+...... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 358889999999999999999999999999876 55567789988988888888 999999999998864 2488889
Q ss_pred HHHHHHHHHccCCH--------HHHHHHHHHHHh-CCC-Ccc-HHHHHHHHHHHHH---------cCChhhHHHHHHHHH
Q 013323 114 YNYLISVCGKCKNS--------DQAIRIFEEMKK-YEV-KPN-GQTYVCLLNACAA---------AGQLDPVYAIVRDMT 173 (445)
Q Consensus 114 ~~~ll~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~-~~~y~~li~~~~~---------~g~~~~a~~~~~~m~ 173 (445)
|..-+.-..+.++. +.+.++|+.... -|. .|+ ...|...+.-... .++++.+..+|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888876665543 344577877554 476 554 4678877765442 345677888998888
Q ss_pred H
Q 013323 174 A 174 (445)
Q Consensus 174 ~ 174 (445)
.
T Consensus 222 ~ 222 (679)
T 4e6h_A 222 C 222 (679)
T ss_dssp T
T ss_pred h
Confidence 5
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.68 E-value=4.6e-06 Score=70.72 Aligned_cols=150 Identities=10% Similarity=-0.014 Sum_probs=115.7
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
.|+..|...-..+...|++++|.+.|+...+..-.++...+..+-.++...|++++|...|+...+.. +-+..+|..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35577777888888999999999999998886544677777778888889999999999999998865 22567888899
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCccH-------HHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC---HHHHHHHH
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNG-------QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD---KFCYAGLI 188 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li 188 (445)
..|.+.|++++|...|++..+... .+. ..|..+-..+...|++++|...|++..+. .|+ ...+..+-
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999998876421 123 45777778888899999999999988875 354 23444444
Q ss_pred HHHH
Q 013323 189 TAHT 192 (445)
Q Consensus 189 ~~~~ 192 (445)
..+.
T Consensus 161 ~~~~ 164 (228)
T 4i17_A 161 VLFY 164 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.66 E-value=2e-06 Score=85.69 Aligned_cols=163 Identities=10% Similarity=0.034 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
+..+|+.+=..+.+.|++++|++.|++..+.. | +...|..+-.++.+.|++++|...|++..+.. +-+...|+.+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 36789999999999999999999999988753 5 46789999999999999999999999998864 23578999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCC
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPR 197 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~ 197 (445)
.+|.+.|++++|++.|++..+.. +-+...|+.+-..+.+.|++++|++.|++..+.. | +...+..+...+...|+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccH
Confidence 99999999999999999988743 1257889999999999999999999999998853 4 477888899999988877
Q ss_pred chHHHHHHHHHHH
Q 013323 198 ADDTATKIIELVE 210 (445)
Q Consensus 198 ~~~~a~~~~~~~~ 210 (445)
+.|.+.++...
T Consensus 162 --~~A~~~~~kal 172 (723)
T 4gyw_A 162 --TDYDERMKKLV 172 (723)
T ss_dssp --TTHHHHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 66766665544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.64 E-value=5.8e-06 Score=70.09 Aligned_cols=210 Identities=10% Similarity=-0.043 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
|...|...-..+...|++++|...|+...+..-+++...+..+-.++.+.|++++|+..|++..+... -+...|..+-.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 44566666666777777777777777777654335666666677777777777777777777766431 24556777777
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccc
Q 013323 155 ACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVS 233 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (445)
.+...|++++|...|++..+.. |+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~--------------------------------------------- 117 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYA--------------------------------------------- 117 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHH---------------------------------------------
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHH---------------------------------------------
Confidence 7777777777777777766642 22 11111111
Q ss_pred hhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhh
Q 013323 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD---VYIVMQNIRCYLHSGDIDN 310 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~ 310 (445)
..|..+-..+...|++++|...++...+. .|+ ...+..+-..|...|
T Consensus 118 ------------------------~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~---- 167 (228)
T 4i17_A 118 ------------------------IYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNG---- 167 (228)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHH----
T ss_pred ------------------------HHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHH----
Confidence 13445555667889999999999998764 565 446666666665544
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHH
Q 013323 311 GHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLL 372 (445)
Q Consensus 311 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll 372 (445)
..+++.+...+ ..+...|..+.. ...+. ++|...+++..+.. |+......++
T Consensus 168 -~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l 220 (228)
T 4i17_A 168 -ADVLRKATPLA-SSNKEKYASEKA------KADAAFKKAVDYLGEAVTLS--PNRTEIKQMQ 220 (228)
T ss_dssp -HHHHHHHGGGT-TTCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred -HHHHHHHHhcc-cCCHHHHHHHHH------HHHHHHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 34455555442 224556665554 34455 88999999988754 5544433333
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.62 E-value=3.9e-06 Score=73.64 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=138.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 60 LRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF-LPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 60 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
+...|++....+ .++..++..+-.++...|+.++|++++.+-...|- .-+...+-.++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677788776655 56667777778889999999999999999877652 1367788899999999999999999999998
Q ss_pred hCCCCc-----cHHHHHHHHHHHHH--cC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHH
Q 013323 139 KYEVKP-----NGQTYVCLLNACAA--AG--QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELV 209 (445)
Q Consensus 139 ~~g~~p-----~~~~y~~li~~~~~--~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~ 209 (445)
+. .| +..+...+..+++. .| +..+|..+|+++.+. .|+..+...++.++...|+. +.|+++++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~--~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI--AEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH--HHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 74 56 35666777766433 34 899999999999775 35644555555577788877 8999999876
Q ss_pred HHhc-CCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCC
Q 013323 210 EQSK-GWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK 288 (445)
Q Consensus 210 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 288 (445)
.+.. .+. .+.+.-+.+..+...+|......|+ .+.++++++++.
T Consensus 238 ~~~~p~~~-------------------------------~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-- 282 (310)
T 3mv2_B 238 LSDYYSVE-------------------------------QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-- 282 (310)
T ss_dssp HSHHHHTT-------------------------------TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--
T ss_pred HHhccccc-------------------------------ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--
Confidence 5421 000 0000004466677566666666777 888999999874
Q ss_pred CCCHH
Q 013323 289 SPDVY 293 (445)
Q Consensus 289 ~p~~~ 293 (445)
.|+..
T Consensus 283 ~P~hp 287 (310)
T 3mv2_B 283 DHEHA 287 (310)
T ss_dssp TCCCH
T ss_pred CCCCh
Confidence 46543
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.61 E-value=8.1e-07 Score=84.05 Aligned_cols=121 Identities=8% Similarity=-0.067 Sum_probs=60.0
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 013323 47 VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123 (445)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 123 (445)
+-..+.+.|++++|.++|++..+.|- |+ .+..|-..+...|+. ++|...|+...+. +...+..|-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CT--GGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45566788999999999998877663 22 233333334445666 8888888888753 55556666664544
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChh---hHHHHHHHHHHcCC
Q 013323 124 CK-----NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD---PVYAIVRDMTAAGA 177 (445)
Q Consensus 124 ~g-----~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~---~a~~~~~~m~~~g~ 177 (445)
.+ ++++|+.+|++..+.|.. ..+..+-..|...+..+ ++.+.+......|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY 140 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC
Confidence 44 678899999888876632 25666666666655443 34444544444443
No 87
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.59 E-value=2.8e-05 Score=73.44 Aligned_cols=302 Identities=13% Similarity=0.067 Sum_probs=176.0
Q ss_pred ChhhHHHHHHHHHhcC-----cHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHCCCCCCH
Q 013323 40 NASEYNTVVTSLTSQR-----RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL---QDTFFFRDQMKANGFLPDV 111 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~g~~p~~ 111 (445)
++..+..+-..+...+ +.++|...|+.-.+.|... .+..|-..+...+.. ..+.+.+....+.|. .
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~ 141 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---P 141 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---T
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---H
Confidence 5555555555444444 6778888888877766433 333344444433332 345555555555442 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG---QLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
..+..|-..|...+.++++..........-...+...+..+-..|...| +.++|+..|+...+.|. ++...+..+-
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 4455566666666644443333222222111223347778888888888 88889999988888773 3444434444
Q ss_pred HHHHcc--CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 189 TAHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 189 ~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
..|... ...+.+.+...++... .+ +...+..+-..
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g------------------------------------------~~~a~~~Lg~~ 257 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG------------------------------------------YPASWVSLAQL 257 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG------------------------------------------STHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC------------------------------------------CHHHHHHHHHH
Confidence 444332 1224467777776644 11 12233333333
Q ss_pred -H--HhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHh
Q 013323 267 -C--AELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSG-----DIDNGHKVFEDYICSEKFPPAELYATLVEGAM 338 (445)
Q Consensus 267 -~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 338 (445)
+ ...++.++|...|+...+.| +...+..|-..|. .| ++++|.++|+... .| ++..+..|=..+.
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYR 329 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHH
Confidence 3 45789999999999888766 5556666666666 55 8999999998877 33 4445544444332
Q ss_pred hcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhh--cccCCChhhHHHHHHHHHHCCCCCCH
Q 013323 339 FGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAA--GEKSGGYTTANYIWDLMQARKITPSL 402 (445)
Q Consensus 339 ~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~ 402 (445)
.+.....+ ++|...|++..+.|. +.....+-..|. .....+.++|...|++-.+.|.....
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~ 393 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEAN 393 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 23332335 899999999888773 344444444443 11246888999999888877754333
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.59 E-value=4e-06 Score=63.95 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
|..+...+...|++++|..+|+++.+.+ +.+..+|..+...+...|++++|..+|+++...+ +.+...|..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444444555555555555544432 1234444444555555555555555555544332 1233344444444555
Q ss_pred cCChhhHHHHHHHHHH
Q 013323 159 AGQLDPVYAIVRDMTA 174 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~ 174 (445)
.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE 97 (136)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555555544444
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.59 E-value=1e-05 Score=74.58 Aligned_cols=231 Identities=8% Similarity=0.002 Sum_probs=156.6
Q ss_pred HHHhcCcHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHC----C-CCC-CHHHHHHHH
Q 013323 50 SLTSQRRFFLLRDVYDDMMLDGV-QPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN----G-FLP-DVAVYNYLI 118 (445)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g-~~p-~~~~~~~ll 118 (445)
.+...|++++|.+.|++..+.-- .++ ..++..+-..+...|+++.|...+++..+. + ..+ ...+++.+-
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 45678999999999998876311 133 345777778888999999999999887642 1 111 256788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CCC-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKY----EVK-PNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA----GAGLDKFCYAGLIT 189 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~ 189 (445)
..|...|++++|.+.|++..+. +-. ....++..+-..|...|++++|...|++..+. +.+....++..+-.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 9999999999999999877642 211 12457888888999999999999999988761 22223566777777
Q ss_pred HHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHh
Q 013323 190 AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAE 269 (445)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~ 269 (445)
.+.+.|+. +.|...++.......-. +. +.....+..+-..+..
T Consensus 270 ~~~~~g~~--~~A~~~~~~al~~~~~~----------------------------------~~-~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 270 TLCKAGQT--QKAFQFIEEGLDHITAR----------------------------------SH-KFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHHTTCH--HHHHHHHHHHHHHCCTT----------------------------------CC-SCHHHHHHHHHHHHSS
T ss_pred HHHHCCCH--HHHHHHHHHHHHHHHHc----------------------------------CC-HHHHHHHHHHHHHHhC
Confidence 78888865 78888887765432100 00 1122234555555666
Q ss_pred ccc---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 270 LKD---VQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 270 ~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
.++ +.+|...++. .+..|+ ...+..+-..|...|++++|...|+...+
T Consensus 313 ~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666 5666655554 333333 33566777888888999999888887654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.42 E-value=1.3e-05 Score=71.01 Aligned_cols=211 Identities=11% Similarity=-0.033 Sum_probs=140.9
Q ss_pred cHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHH
Q 013323 56 RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN----GFLPD-VAVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 56 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a 130 (445)
++++|.+.|++. ...+...|++++|...|++..+. |-.++ ..+|+.+-.+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888777765 33566788999999888877542 32222 56888899999999999999
Q ss_pred HHHHHHHHhC----CCCc-cHHHHHHHHHHHHHc-CChhhHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCCch
Q 013323 131 IRIFEEMKKY----EVKP-NGQTYVCLLNACAAA-GQLDPVYAIVRDMTAAGA-GLD----KFCYAGLITAHTNKIPRAD 199 (445)
Q Consensus 131 ~~~~~~m~~~----g~~p-~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~ 199 (445)
+..|++..+. |-.+ -..+|+.+-..|... |++++|...|++..+..- ..+ ..++..+-..+...|+.
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-- 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY-- 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH--
Confidence 9888877542 2111 145788888888886 999999999988765310 011 34577777888888866
Q ss_pred HHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCccc-CchhHHHHHHHHHHhcccHHHHHH
Q 013323 200 DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLS-RLLTVYHVAFHACAELKDVQAMET 278 (445)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~li~~~~~~g~~~~a~~ 278 (445)
+.|...++.......-... .. .....|..+..++...|++++|..
T Consensus 175 ~~A~~~~~~al~~~~~~~~----------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRL----------------------------------SQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTT----------------------------------TGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCc----------------------------------ccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888877654211000 00 001256777788889999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHH--hcCChhhHHHHHHHHH
Q 013323 279 LLEMLKKDRKSPDV------YIVMQNIRCYL--HSGDIDNGHKVFEDYI 319 (445)
Q Consensus 279 ~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~ 319 (445)
.++...+ +.|+. ..+..++.+|. ..+++++|.+.|+.+.
T Consensus 221 ~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 221 TLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9998765 23321 23455666664 3466777877776543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.39 E-value=8.8e-06 Score=72.02 Aligned_cols=167 Identities=10% Similarity=0.006 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLD----GVQPT-RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN----GFLP-DV 111 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~ 111 (445)
..|+.....|...|++++|.+.|++.... |-.++ ..+|+.+-.++.+.|++++|...|+...+. |-.+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35777788889999999999999877652 32222 457888999999999999999999987653 2111 14
Q ss_pred HHHHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCH----
Q 013323 112 AVYNYLISVCGKC-KNSDQAIRIFEEMKKY----EVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDK---- 181 (445)
Q Consensus 112 ~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~----g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---- 181 (445)
.+|+.+-..|... |++++|+..|++..+. +-.+. ..+|..+...+.+.|++++|...|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788999999996 9999999999987652 11111 457888999999999999999999999885432221
Q ss_pred --HHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 182 --FCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 182 --~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
..|..+...+...|+. +.|...++...
T Consensus 198 ~~~~~~~lg~~~~~~g~~--~~A~~~~~~al 226 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDA--VAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 1455666667777765 88888877644
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.38 E-value=1.7e-05 Score=66.21 Aligned_cols=77 Identities=13% Similarity=-0.004 Sum_probs=54.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTN 193 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 193 (445)
+.+-.+|.+.|++++|...|++..+.. +-+...|..+-..+...|++++|...|++..+.. +-+...+..+-..+..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 347778888888888888888887643 2256778888888888888888888888887753 1235555555555443
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.36 E-value=2.4e-05 Score=65.32 Aligned_cols=129 Identities=8% Similarity=-0.088 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 122 (445)
.+..+-..+...|++++|.+.|++. +.|+...|..+-..+.+.|++++|...|+...+.. +.+...|..+-.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3455667788999999999999876 46788999999999999999999999999998764 346788999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCC--------------Cc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 123 KCKNSDQAIRIFEEMKKYEV--------------KP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~--------------~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
+.|++++|...|++..+..- .| +...|..+...+.+.|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999987421 12 23778899999999999999999999998864
No 94
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.33 E-value=0.00028 Score=69.59 Aligned_cols=247 Identities=10% Similarity=0.006 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHhcC-------cHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHH-HHHHHHHHCCCCCCHHH
Q 013323 42 SEYNTVVTSLTSQR-------RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTF-FFRDQMKANGFLPDVAV 113 (445)
Q Consensus 42 ~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~ 113 (445)
..|...|..--..+ ..+.+..+|++.... ++-+...|-.....+.+.|+.++|. ++|+..... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45666665544332 134456778887764 3346777888888888889999996 999999864 3456777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC---------CCc------------cHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKYE---------VKP------------NGQTYVCLLNACAAAGQLDPVYAIVRDM 172 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g---------~~p------------~~~~y~~li~~~~~~g~~~~a~~~~~~m 172 (445)
|-..+...-+.|+++.|.++|+...... -.| ....|...+....+.|+.+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888899999999999999987631 013 2346888888888999999999999999
Q ss_pred HHc-C-CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhc
Q 013323 173 TAA-G-AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRG 250 (445)
Q Consensus 173 ~~~-g-~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (445)
.+. + ..+......+.+.... .++. +.|.++|+...+.-
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~-~~d~--e~Ar~ife~~Lk~~------------------------------------- 500 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHI-SKDT--KTACKVLELGLKYF------------------------------------- 500 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTT-TSCC--HHHHHHHHHHHHHH-------------------------------------
T ss_pred HHhcCCCChHHHHHHHHHHHHh-CCCH--HHHHHHHHHHHHHC-------------------------------------
Confidence 876 3 2333444444444322 2223 88999999876541
Q ss_pred CcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 013323 251 GFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328 (445)
Q Consensus 251 g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 328 (445)
+.+...|...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.++.+++.+. .|+..
T Consensus 501 ---p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~ 575 (679)
T 4e6h_A 501 ---ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVN 575 (679)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCC
T ss_pred ---CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCc
Confidence 3455567778888888899999999999987654322 3457888888888999999999999999886 35555
Q ss_pred HHHHHHH
Q 013323 329 LYATLVE 335 (445)
Q Consensus 329 ~~~~li~ 335 (445)
....+++
T Consensus 576 ~~~~f~~ 582 (679)
T 4e6h_A 576 KLEEFTN 582 (679)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666666
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.30 E-value=0.0006 Score=60.19 Aligned_cols=241 Identities=7% Similarity=0.015 Sum_probs=163.1
Q ss_pred HHHHhcC-cHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 013323 49 TSLTSQR-RFFLLRDVYDDMMLDGVQPTRD-LFHSLIVGTMKGS--RLQDTFFFRDQMKANGFLPDVAVYNYLISVC--- 121 (445)
Q Consensus 49 ~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--- 121 (445)
.+..+.| ..++|+++++.+...+ |+.. .|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 3334444 4579999999998854 6544 4777777777777 9999999999999865 23455676654444
Q ss_pred -Hcc---CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChh--hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 013323 122 -GKC---KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD--PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKI 195 (445)
Q Consensus 122 -~~~---g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 195 (445)
... +++++++.+++.+.+.. +-|..+|+.---.+.+.|.++ ++++.++.+.+.... |...|+.--..+.+.+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 444 78999999999998764 347888888888888889888 999999999987543 5666665444444443
Q ss_pred CCc----hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcc
Q 013323 196 PRA----DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELK 271 (445)
Q Consensus 196 ~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g 271 (445)
... .+.+...++...... +.|...|+-.-..+.+.|
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~----------------------------------------p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC----------------------------------------PQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC----------------------------------------SSCHHHHHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHhC----------------------------------------CCCccHHHHHHHHHHhcC
Confidence 210 133333333322221 667778888777777777
Q ss_pred c-HHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 013323 272 D-VQAMETLLEMLKKDR--KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLV 334 (445)
Q Consensus 272 ~-~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 334 (445)
+ .+.+..+...+.+.+ -..+...+..+...|.+.|+.++|.++++.+.+.-=+.....|+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 235 RSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp CCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 6 444555666554432 13467788889999999999999999999988641122344444433
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.28 E-value=1.8e-05 Score=63.99 Aligned_cols=161 Identities=8% Similarity=-0.012 Sum_probs=99.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA-HTN 193 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~ 193 (445)
..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...|+...... |+...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344455666677777777776654421 1235566666666777777777777776655432 233222211101 111
Q ss_pred cCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccH
Q 013323 194 KIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDV 273 (445)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~ 273 (445)
.+.. ..+...++...... +.+...+..+-..+...|++
T Consensus 87 ~~~~--~~a~~~~~~al~~~----------------------------------------P~~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 87 QAAE--SPELKRLEQELAAN----------------------------------------PDNFELACELAVQYNQVGRD 124 (176)
T ss_dssp HHTS--CHHHHHHHHHHHHS----------------------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred hccc--chHHHHHHHHHHhC----------------------------------------CCCHHHHHHHHHHHHHcccH
Confidence 1111 22344444433321 44567788888889999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 274 QAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 274 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
++|...|+...+....+ +...+..+...+...|+.++|...|+....
T Consensus 125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999988754332 356788889999999999999999987654
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.27 E-value=6.6e-05 Score=64.99 Aligned_cols=170 Identities=11% Similarity=-0.033 Sum_probs=125.1
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-CC-CHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF-LP-DVA 112 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~ 112 (445)
.+...+-.+-..+.+.|++++|...|+...+.. |+ ...+..+-.++.+.|++++|...|+...+..- .| ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456666677788889999999999999998753 43 56777888889999999999999999988531 12 245
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCcc-HHHH-----------------HHHHHHHHHcCChhhHH
Q 013323 113 VYNYLISVCGK--------CKNSDQAIRIFEEMKKYEVKPN-GQTY-----------------VCLLNACAAAGQLDPVY 166 (445)
Q Consensus 113 ~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~p~-~~~y-----------------~~li~~~~~~g~~~~a~ 166 (445)
.+..+-.++.+ .|++++|...|++..+.. |+ ...+ ..+-..|.+.|++++|.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 67777888888 999999999999998742 33 2223 45577889999999999
Q ss_pred HHHHHHHHcCCC-C-CHHHHHHHHHHHHccCCC--------chHHHHHHHHHHHHh
Q 013323 167 AIVRDMTAAGAG-L-DKFCYAGLITAHTNKIPR--------ADDTATKIIELVEQS 212 (445)
Q Consensus 167 ~~~~~m~~~g~~-p-~~~~~~~li~~~~~~~~~--------~~~~a~~~~~~~~~~ 212 (445)
..|++..+..-. + ....+..+..++...|.. ..+.|...++.+...
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999886321 1 234556666666654211 226777777776654
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.27 E-value=6.4e-05 Score=65.07 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhc----------CChhhHHHHHHHHHhC
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKDRKS-P-DVYIVMQNIRCYLHS----------GDIDNGHKVFEDYICS 321 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 321 (445)
.+-..+.+.|++++|...|+.+.+.... + ....+..+..+|... |++++|...|+.+.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3445556666666666666665543211 1 123444455555544 5556666666665553
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.26 E-value=4.3e-05 Score=67.35 Aligned_cols=168 Identities=8% Similarity=-0.028 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 013323 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187 (445)
Q Consensus 108 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 187 (445)
+.+...+..+-..+.+.|++++|...|++..... +-+...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3455667778888889999999999999987753 225678888999999999999999999988665 3554433222
Q ss_pred HH-HHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 188 IT-AHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 188 i~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
.. .+...+.. +.+...++...... +.+...+..+-..
T Consensus 191 ~~~~l~~~~~~--~~a~~~l~~al~~~----------------------------------------P~~~~~~~~la~~ 228 (287)
T 3qou_A 191 AQIELLXQAAD--TPEIQQLQQQVAEN----------------------------------------PEDAALATQLALQ 228 (287)
T ss_dssp HHHHHHHHHTS--CHHHHHHHHHHHHC----------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHhhccc--CccHHHHHHHHhcC----------------------------------------CccHHHHHHHHHH
Confidence 22 23333433 44555555544331 5567788888999
Q ss_pred HHhcccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 267 CAELKDVQAMETLLEMLKKDRKS-PDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 267 ~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
+...|++++|...+..+.+..-. .+...+..+...|...|+.++|...|++...
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999988874322 2366888899999999999999988876543
No 100
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.26 E-value=3.7e-05 Score=57.55 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
..|..+...+...|+++.|.+.|++..+.. +.+..++..+...+.+.|++++|...|+.+.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555555555566666666555555432 1234445555555555555555555555555432 12344555555555
Q ss_pred HccCCHHHHHHHHHHHHh
Q 013323 122 GKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~ 139 (445)
.+.|++++|...|++..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555543
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.25 E-value=0.00012 Score=60.89 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=90.8
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhc
Q 013323 151 CLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMM 230 (445)
Q Consensus 151 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (445)
.+-..+.+.|++++|...|++..+.. +-+...+..+-..+...|+. +.|...++......
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~----------------- 118 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQE--KDALRMYEKILQLE----------------- 118 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcC-----------------
Confidence 37888899999999999999988864 22577777788888888866 88888888876642
Q ss_pred ccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhccc--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 013323 231 GVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD--VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDI 308 (445)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 308 (445)
+.+...|..+-..+...|. ...+...+..... ..|....+...-.++...|++
T Consensus 119 -----------------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~ 173 (208)
T 3urz_A 119 -----------------------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRY 173 (208)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCH
Confidence 4456667777666655553 3344444444321 222223333344556667889
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 309 DNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 309 ~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
++|...|++..+. .|+......+.+
T Consensus 174 ~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 174 EKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 9999999887764 566655554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.22 E-value=3.3e-05 Score=76.97 Aligned_cols=173 Identities=10% Similarity=-0.065 Sum_probs=126.2
Q ss_pred hcCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 87 MKGSRLQDTFFFRDQMK--------ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 87 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
...|++++|.+.+++.. +.. +.+...|..+-.++.+.|++++|...|++..+.. +-+...|..+-..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888999999999887 322 3456778888888999999999999999887643 2356788888888999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhc
Q 013323 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (445)
.|++++|...|++..+.. +-+...+..+-..+.+.|+. +. ...++...+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~------------------------- 530 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNT--DE-HKFYQTVWSTN------------------------- 530 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHC-------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhC-------------------------
Confidence 999999999999988753 12456667777777777776 55 66666655432
Q ss_pred chhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013323 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGD 307 (445)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 307 (445)
+.+...|..+-.++.+.|++++|...|++..+ +.|+ ...+..+..++...|+
T Consensus 531 ---------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 ---------------DGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred ---------------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 45566788888889999999999998887655 4564 4566667777766554
No 103
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.20 E-value=7.2e-05 Score=55.87 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|..+|+++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4677888888999999999999999998764 3467889999999999999999999999998753 3467889999999
Q ss_pred HHHcCChhhHHHHHHHHHHcC
Q 013323 156 CAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g 176 (445)
+...|++++|...|+++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999998753
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.18 E-value=6.3e-05 Score=66.29 Aligned_cols=174 Identities=6% Similarity=-0.059 Sum_probs=132.5
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 013323 29 AEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFL 108 (445)
Q Consensus 29 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 108 (445)
..+........+...+..+-..+.+.|++++|.+.|++..+.. +-+...+..+-..+.+.|++++|...++......
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-- 181 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-- 181 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--
Confidence 3444444455556677778888899999999999999988753 2256778888899999999999999999987653
Q ss_pred CCHHHHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC-CCHHHHHH
Q 013323 109 PDVAVYNYLIS-VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG-LDKFCYAG 186 (445)
Q Consensus 109 p~~~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ 186 (445)
|+......... .+.+.++.+.|...|++..... +.+...+..+-..+...|++++|...|++..+..-. .+...+..
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 66544333333 3667788888999998887753 246788999999999999999999999999886422 23677888
Q ss_pred HHHHHHccCCCchHHHHHHHHH
Q 013323 187 LITAHTNKIPRADDTATKIIEL 208 (445)
Q Consensus 187 li~~~~~~~~~~~~~a~~~~~~ 208 (445)
+...+...|+. +.+...++.
T Consensus 261 l~~~~~~~g~~--~~a~~~~r~ 280 (287)
T 3qou_A 261 FQEILAALGTG--DALASXYRR 280 (287)
T ss_dssp HHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHcCCC--CcHHHHHHH
Confidence 88888888876 556555554
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=7.6e-05 Score=59.23 Aligned_cols=130 Identities=8% Similarity=-0.033 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
...|..+-..+...|+++.|...|+...+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445666667777777777777777766542 2245666666677777777777777777776643 2346667777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHH--HHHHHHHHcCChhhHHHHHHHHH
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYV--CLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~--~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
+.+.|++++|...|++..+... .+...+. .....+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777665421 1333332 23333556667777776666543
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.17 E-value=0.00031 Score=58.66 Aligned_cols=180 Identities=10% Similarity=-0.028 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC----ChhhHHHHH
Q 013323 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG----QLDPVYAIV 169 (445)
Q Consensus 94 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g----~~~~a~~~~ 169 (445)
+|.+.|+...+.| +...+..|-..|...+++++|..+|++..+.| +...+..+-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555543 44555555555555666666666666665543 33444444444444 4 566666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHh
Q 013323 170 RDMTAAGAGLDKFCYAGLITAHTNK--IPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247 (445)
Q Consensus 170 ~~m~~~g~~p~~~~~~~li~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (445)
++..+.| +...+..+-..|... ...+.+.+...++.....+..
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-------------------------------- 121 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES-------------------------------- 121 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS--------------------------------
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC--------------------------------
Confidence 6655544 333333333333320 011234444444443322100
Q ss_pred hhcCcccCchhHHHHHHHHHHh----cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----ChhhHHHHHHH
Q 013323 248 RRGGFLSRLLTVYHVAFHACAE----LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHS-G-----DIDNGHKVFED 317 (445)
Q Consensus 248 ~~~g~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~ 317 (445)
..+...+..+-..|.. .++.++|...|+...+. ..+...+..|-..|... | +.++|..+|+.
T Consensus 122 ------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 122 ------DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp ------HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 0013345555555555 66788888888887765 22344555566666553 3 78888888888
Q ss_pred HHhCCC
Q 013323 318 YICSEK 323 (445)
Q Consensus 318 m~~~~~ 323 (445)
..+.|.
T Consensus 194 A~~~g~ 199 (212)
T 3rjv_A 194 SCLEGF 199 (212)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 777653
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.15 E-value=0.00031 Score=59.19 Aligned_cols=56 Identities=16% Similarity=0.017 Sum_probs=32.1
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 264 FHACAELKDVQAMETLLEMLKKDRKSPD----VYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 264 i~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
-..+.+.|++++|...|+.+.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 344555666666666666655431 22 134555666666666666666666665554
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.14 E-value=8.7e-05 Score=66.10 Aligned_cols=119 Identities=8% Similarity=-0.041 Sum_probs=56.4
Q ss_pred cCcHhHHHHHHHHHHHC------CCCCCHH----HHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 013323 54 QRRFFLLRDVYDDMMLD------GVQPTRD----LFHSLIVGTMKGSRLQDTFFFRDQMKAN----GFLP-DVAVYNYLI 118 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~------g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll 118 (445)
.|++++|.+++++-.+. +..++.. .|......+...|++++|...|....+. |-.+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777776655431 1112211 2333344455556666666555554432 1000 123555555
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKY----EVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
..|.+.|++++|...|++..+. |-.. -..+|+.+-..|.. |++++|+..|++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 5555566666665555544321 1110 12344555555555 66666665555544
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.14 E-value=0.00079 Score=59.31 Aligned_cols=163 Identities=8% Similarity=-0.038 Sum_probs=108.1
Q ss_pred CCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhcCCChhHHHHHHHHHHHCC-CCCCH-
Q 013323 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLF---HSLIVGTMKGSRLQDTFFFRDQMKANG-FLPDV- 111 (445)
Q Consensus 37 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~- 111 (445)
..|+..+...+...+.-.-+ +++ .....++...+ ...+..+...|++++|..++++..+.. ..|+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~-----~~~----~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPII-----HFY----EVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTH-----HHH----HTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHH-----HHh----CCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 46777777666665543321 111 22222333333 334667888999999999999988743 22332
Q ss_pred ---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-cc----HHHHHHHHHHHHHcCChhhHHHHHHHHHH----c-CCC
Q 013323 112 ---AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVK-PN----GQTYVCLLNACAAAGQLDPVYAIVRDMTA----A-GAG 178 (445)
Q Consensus 112 ---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~ 178 (445)
..+..+...+...+++++|...|++....... ++ ..+|+.+-..|...|++++|...|++..+ . +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 23445777777888999999999998874222 22 34689999999999999999999999874 1 222
Q ss_pred CC-HHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 179 LD-KFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 179 p~-~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
+. ..++..+-..|.+.|+. +.|...++...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y--~~A~~~~~~al 223 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRY--EESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHH
Confidence 22 23667777788888866 77777776544
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.13 E-value=9.1e-05 Score=72.23 Aligned_cols=152 Identities=9% Similarity=-0.107 Sum_probs=95.3
Q ss_pred cCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 013323 54 QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRI 133 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 133 (445)
.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888776542 1246677777778888888888888888887754 23567788888888888888888888
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCCchHHHHHHHHHHH
Q 013323 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK---IPRADDTATKIIELVE 210 (445)
Q Consensus 134 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~~~a~~~~~~~~ 210 (445)
|++..+.. +.+...|..+-..+.+.|++++|.+.|++..+.. +.+...+..+...+... |+. +.|...++...
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~--~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL--DVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH--HHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH--HHHHHHHHHHH
Confidence 88877643 2246778888888888888888888888877753 22456666666666666 544 66666666554
Q ss_pred H
Q 013323 211 Q 211 (445)
Q Consensus 211 ~ 211 (445)
+
T Consensus 156 ~ 156 (568)
T 2vsy_A 156 A 156 (568)
T ss_dssp H
T ss_pred h
Confidence 4
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.13 E-value=9.8e-05 Score=55.66 Aligned_cols=119 Identities=9% Similarity=-0.028 Sum_probs=67.3
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+...+...|+++.|.+.|+...+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455555666666666666666666665532 1245555556666666666666666666665542 223555666666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ 161 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 161 (445)
.+.+.|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666655432 1234455555555555544
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.12 E-value=0.00015 Score=61.18 Aligned_cols=166 Identities=13% Similarity=0.026 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV-QPT-RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV----AV 113 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~ 113 (445)
+...+..+-..+.+.|++++|...|+.+.+..- .|. ...+..+..++.+.|++++|...|+.+.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 344555666778899999999999999987531 121 3567778889999999999999999998754 332 23
Q ss_pred HHHHHHHHH------------------ccCCHHHHHHHHHHHHhCCCCccH-HHH-----------------HHHHHHHH
Q 013323 114 YNYLISVCG------------------KCKNSDQAIRIFEEMKKYEVKPNG-QTY-----------------VCLLNACA 157 (445)
Q Consensus 114 ~~~ll~~~~------------------~~g~~~~a~~~~~~m~~~g~~p~~-~~y-----------------~~li~~~~ 157 (445)
+-.+-.++. ..|++++|...|++..+.. |+. ..+ -.+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443 2578999999999998752 432 122 23455678
Q ss_pred HcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhc
Q 013323 158 AAGQLDPVYAIVRDMTAAGAGLD----KFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213 (445)
Q Consensus 158 ~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~ 213 (445)
+.|++++|...|+.+.+.. |+ ...+..+..++.+.|+. +.|.+.++.+....
T Consensus 159 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~--~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMN--AQAEKVAKIIAANS 214 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHCC
T ss_pred HcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhC
Confidence 8999999999999998863 33 24577778888898876 89999999877653
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.11 E-value=0.00099 Score=63.41 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=71.5
Q ss_pred CCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHC-CCC-CCHHH
Q 013323 37 YANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR-LQDTFFFRDQMKAN-GFL-PDVAV 113 (445)
Q Consensus 37 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-g~~-p~~~~ 113 (445)
+..-...|...+..+-. |+++.+..+|++-... .|+...|...+.-..+.++ .+....+|+..... |.. ++...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 33444566667766655 8899999999988774 4899999888887776653 45677788877753 533 46788
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHhC
Q 013323 114 YNYLISVCGK----CKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 114 ~~~ll~~~~~----~g~~~~a~~~~~~m~~~ 140 (445)
|...+..+.. .++++.+.++|++....
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 8888876542 45688899999998873
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.10 E-value=6.8e-05 Score=74.73 Aligned_cols=152 Identities=13% Similarity=-0.011 Sum_probs=125.7
Q ss_pred HhcCcHhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 013323 52 TSQRRFFLLRDVYDDMM--------LDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 123 (445)
...|++++|++.+++.. +. -+.+...|..+-.++.+.|++++|...|++..+.+ +-+...|..+-.++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999987 32 23356678888889999999999999999998754 2467889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHH
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTAT 203 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~ 203 (445)
.|++++|...|++..+.. +-+...|..+-.++.+.|++++ .+.|++..+.. +-+...|..+-.++.+.|+. +.|.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~--~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR--VGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH--HHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH--HHHH
Confidence 999999999999988753 1256788999999999999999 99999998864 23567888888889888876 8888
Q ss_pred HHHHHHH
Q 013323 204 KIIELVE 210 (445)
Q Consensus 204 ~~~~~~~ 210 (445)
..++...
T Consensus 555 ~~~~~al 561 (681)
T 2pzi_A 555 RTLDEVP 561 (681)
T ss_dssp HHHHTSC
T ss_pred HHHHhhc
Confidence 8887644
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.10 E-value=0.00012 Score=55.50 Aligned_cols=119 Identities=8% Similarity=-0.017 Sum_probs=76.0
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
..+...|..+-..+.+.|++++|.+.|++..+.. +.+...+..+-..+...|++++|...++...+.. +.+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456667777777777777777777777776542 2255666666777777777777777777776643 2346667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHc
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA 159 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 159 (445)
..++.+.|++++|...|++..+.. +.+...+..+...+.+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 777777777777777777766532 11234444444444443
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.07 E-value=0.0003 Score=62.06 Aligned_cols=164 Identities=9% Similarity=0.001 Sum_probs=119.7
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhcCCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDG-VQPTRD----LFHSLIVGTMKGSRLQDTFFFRDQMKANGFL-PD----VAVYN 115 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~ 115 (445)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...+++++|...|+...+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34678889999999999999987743 223322 2334666677888999999999999874322 22 34799
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh----C-CCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHH----cCCCCC-HHHH
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKK----Y-EVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTA----AGAGLD-KFCY 184 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~ 184 (445)
.+-..|...|++++|+..|++..+ . +..+. ..+|..+...|.+.|++++|...+++..+ .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999873 1 22222 34788999999999999999999998764 233333 5677
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 185 AGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 185 ~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
..+-..+.+.|+. .+.|...++...
T Consensus 240 ~~lg~~~~~~g~~-~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYE-EAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHH
Confidence 7777788877731 256666665543
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.06 E-value=5.4e-05 Score=61.19 Aligned_cols=161 Identities=9% Similarity=0.004 Sum_probs=115.5
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV-C 121 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~ 121 (445)
.+...-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...|+...+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556677888999999999998876532 2256678888888999999999999999887643 444433332211 2
Q ss_pred HccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCCch
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL-DKFCYAGLITAHTNKIPRAD 199 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 199 (445)
.+.++...|...|++..+. .| +...+..+-..+...|++++|...|++..+..-.+ +...+..+...+...|+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~-- 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG-- 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS--
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC--
Confidence 2223334577888887764 34 57888889999999999999999999998864332 356778888888888877
Q ss_pred HHHHHHHHHHH
Q 013323 200 DTATKIIELVE 210 (445)
Q Consensus 200 ~~a~~~~~~~~ 210 (445)
+.+...++...
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66777776543
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.06 E-value=0.00013 Score=71.23 Aligned_cols=154 Identities=6% Similarity=-0.090 Sum_probs=110.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHH
Q 013323 89 GSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAI 168 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~ 168 (445)
.|++++|.+.|++..+.. +.+...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-..+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988754 2357889999999999999999999999998754 23578899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhh
Q 013323 169 VRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHR 248 (445)
Q Consensus 169 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (445)
|++..+.. +.+...+..+-..+.+.|+. +.|...++...+..
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~----------------------------------- 121 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQA--EAAAAAYTRAHQLL----------------------------------- 121 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-----------------------------------
Confidence 99998864 23577788888888888866 88888888766542
Q ss_pred hcCcccCchhHHHHHHHHHHhc---ccHHHHHHHHHHHHhCC
Q 013323 249 RGGFLSRLLTVYHVAFHACAEL---KDVQAMETLLEMLKKDR 287 (445)
Q Consensus 249 ~~g~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 287 (445)
+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 122 -----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 122 -----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 44566788888888888 99999999999887653
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.05 E-value=4.7e-05 Score=59.78 Aligned_cols=138 Identities=7% Similarity=-0.099 Sum_probs=104.1
Q ss_pred HHhcCcHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 013323 51 LTSQRRFFLLRDVYDDMMLDGVQPTRD-LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ 129 (445)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 129 (445)
+...|++++|++.+...... .|+.. .+-.+-..|.+.|++++|.+.|+...+.. +-+..+|..+-.+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 34568889999888876542 34332 35566778899999999999999998864 2468899999999999999999
Q ss_pred HHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 013323 130 AIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAI-VRDMTAAGAGL-DKFCYAGLITAHTNKI 195 (445)
Q Consensus 130 a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~~~~~li~~~~~~~ 195 (445)
|...|++..+. .| +..+|..+-..+.+.|+++++... ++...+. .| +..+|...-..+...|
T Consensus 84 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 99999998875 34 577899999999999999877665 4777664 24 4555655555555544
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.03 E-value=0.0003 Score=62.56 Aligned_cols=194 Identities=9% Similarity=0.032 Sum_probs=108.6
Q ss_pred CCChhHHHHHHHHHHHC------CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCc-cHHHHHHHH
Q 013323 89 GSRLQDTFFFRDQMKAN------GFLPDV----AVYNYLISVCGKCKNSDQAIRIFEEMKKY----EVKP-NGQTYVCLL 153 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~------g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~y~~li 153 (445)
.|++++|.+++++..+. ++.++. ..|+.....|...|++++|...|.+..+. |-.+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777766542 112332 35666677788888888888888776542 2111 145777888
Q ss_pred HHHHHcCChhhHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchh
Q 013323 154 NACAAAGQLDPVYAIVRDMTAAG--A-GLD--KFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENE 228 (445)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g--~-~p~--~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (445)
..|.+.|++++|...|++..+.- . .|. ..++..+-..|.. |+. +.|...++.......
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~--~~A~~~~~~Al~~~~-------------- 146 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL--SKAVHLYQQAAAVFE-------------- 146 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH--HHHHHHHHHHHHHHH--------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH--HHHHHHHHHHHHHHH--------------
Confidence 88888888888888888765421 0 111 2344445555555 543 666666655432100
Q ss_pred hcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHH
Q 013323 229 MMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSPDV-YIVMQNIRCYL 303 (445)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~ 303 (445)
..|.......+++.+-..+.+.|++++|...|+...+. +..++. ..+..+...+.
T Consensus 147 --------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 147 --------------------NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 00000011234556666666677777777666655432 111111 24444555555
Q ss_pred hcCChhhHHHHHHHHH
Q 013323 304 HSGDIDNGHKVFEDYI 319 (445)
Q Consensus 304 ~~g~~~~a~~~~~~m~ 319 (445)
..|++++|...|++..
T Consensus 207 ~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHh
Confidence 6677777777766665
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.01 E-value=0.0018 Score=57.04 Aligned_cols=191 Identities=8% Similarity=-0.018 Sum_probs=116.7
Q ss_pred cccccccccceeecchHHHHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 013323 12 KSVGGALGRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR 91 (445)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 91 (445)
......++... .+....-.+......|+..+...+...+... ++........-. +.....+...+..+...|+
T Consensus 18 ~~tq~~la~~~-~s~~~is~~e~g~~~~~~~~l~~l~~~l~~~--~~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 90 (293)
T 2qfc_A 18 GLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIP--IIHFYEVLIYSD----IERKKQFKDQVIMLCKQKR 90 (293)
T ss_dssp TCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCC--THHHHHHHHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHH-cCHHHHHHHHCCCCCCCHHHHHHHHHHhCcC--HHHHhccccccc----hhHHHHHHHHHHHHHHhhh
Confidence 33444555555 4443333333333457776554443333221 122111111110 1123455667778889999
Q ss_pred hhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---Ccc--HHHHHHHHHHHHHcCC
Q 013323 92 LQDTFFFRDQMKANGFLP-D----VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV---KPN--GQTYVCLLNACAAAGQ 161 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~~y~~li~~~~~~g~ 161 (445)
+++|.+.+++..+..-.. + ...+..+...+...|++++|...|++..+... .+. ..+|+.+-..|...|+
T Consensus 91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 170 (293)
T 2qfc_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY 170 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999887753221 1 12344456667888999999999998875321 122 4588999999999999
Q ss_pred hhhHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 162 LDPVYAIVRDMTA---A-GAGL--DKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 162 ~~~a~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
+++|...|++..+ . +-.+ ...++..+-..|...|+. +.|...++....
T Consensus 171 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--~~Al~~~~kal~ 224 (293)
T 2qfc_A 171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--EESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH--HHHHHHHHHHHH
Confidence 9999999998873 2 1111 125777777788888866 778877776543
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.99 E-value=0.00018 Score=54.48 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013323 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153 (445)
Q Consensus 74 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 153 (445)
.+...|..+-..+.+.|++++|...|+...+.. +.+..+|..+...+...|++++|...|++..+.. +.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 355678888889999999999999999998764 2468889999999999999999999999988753 23678899999
Q ss_pred HHHHHcCChhhHHHHHHHHHHc
Q 013323 154 NACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
..+.+.|++++|...|++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.98 E-value=0.00061 Score=56.56 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
+..+-..+...|++++|...|++.. .|+..+|..+-..|.+.|++++|...|++..... +.+...|..+-..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344445566777777777776553 4566677777777777777777777777666542 2345666667777777
Q ss_pred cCChhhHHHHHHHHHHc
Q 013323 159 AGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~~ 175 (445)
.|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 77777777777766653
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.97 E-value=0.0011 Score=58.25 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=121.0
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhcCCChhHHHHHHHHHHHCCC---CCC--
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT-R----DLFHSLIVGTMKGSRLQDTFFFRDQMKANGF---LPD-- 110 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---~p~-- 110 (445)
...+...+..+...|++++|.+.++...+..-..+ . ..+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455677888999999999999988776532211 1 1233445566788999999999999875421 122
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHHc----CCCCC
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKK----YEVKP--NGQTYVCLLNACAAAGQLDPVYAIVRDMTAA----GAGLD 180 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~ 180 (445)
..+|+.+-..|...|++++|...|++..+ .+-.+ ...+|..+...|.+.|++++|...+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45899999999999999999999998762 11112 2268899999999999999999999987653 22222
Q ss_pred -HHHHHHHHHHHHccCCCchHHH-HHHHHHH
Q 013323 181 -KFCYAGLITAHTNKIPRADDTA-TKIIELV 209 (445)
Q Consensus 181 -~~~~~~li~~~~~~~~~~~~~a-~~~~~~~ 209 (445)
..+|..+-..+.+.|+. +.| ...++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~--~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYE--EAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 56777777888888876 667 6655543
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.96 E-value=0.00034 Score=52.52 Aligned_cols=119 Identities=10% Similarity=-0.006 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+...+..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...+++..... +.+...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44567777888899999999999999998754 3468889999999999999999999999988753 235778899999
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 155 ACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
.+.+.|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 9999999999999999998864 2255666666666665543
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.95 E-value=0.0027 Score=52.84 Aligned_cols=166 Identities=7% Similarity=-0.021 Sum_probs=128.7
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHCCCCCCHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS----RLQDTFFFRDQMKANGFLPDVAVY 114 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~ 114 (445)
-++.++..+=..+...+++++|.+.|+...+.| +...+..|-..+.. + +.++|.+.|+...+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 467778888888888999999999999998876 56667777777777 6 8999999999998865 56778
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCHHHHH
Q 013323 115 NYLISVCGK----CKNSDQAIRIFEEMKKYEVK-PNGQTYVCLLNACAA----AGQLDPVYAIVRDMTAAGAGLDKFCYA 185 (445)
Q Consensus 115 ~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 185 (445)
..|-..|.. .+++++|..+|++..+.|.. .+...+..+-..|.. .+++++|...|++..+.+ .+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHH
Confidence 888888877 88999999999999887632 126788888888888 789999999999998872 2333455
Q ss_pred HHHHHHHcc-C---CCchHHHHHHHHHHHHhc
Q 013323 186 GLITAHTNK-I---PRADDTATKIIELVEQSK 213 (445)
Q Consensus 186 ~li~~~~~~-~---~~~~~~a~~~~~~~~~~~ 213 (445)
.+-..|... | ..+.+.|...++.....+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555555432 2 335588888888876654
No 127
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.94 E-value=9.8e-05 Score=57.90 Aligned_cols=122 Identities=8% Similarity=-0.072 Sum_probs=92.6
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChh
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGFLPD-VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~ 163 (445)
.+...|++++|...++..... .|+ ...+-.+-..|.+.|++++|++.|++..+.. +-+..+|..+-..+.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 445667889999888887653 243 3456678889999999999999999998753 236789999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 164 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
+|...|++..+.. +-+...+..+-..+.+.|+.+ +.+...++...+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~-~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTD-GRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSS-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Confidence 9999999998863 225778888888888888651 334444555444
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.94 E-value=0.00012 Score=57.49 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 013323 77 DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 77 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~ 156 (445)
..+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|++..... +-+...|..+-.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 356666677888999999999999998765 2468889999999999999999999999988753 22567888899999
Q ss_pred HHcCChhhHHHHHHHHHHcC
Q 013323 157 AAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 157 ~~~g~~~~a~~~~~~m~~~g 176 (445)
.+.|++++|...|+...+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988853
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.92 E-value=7.2e-05 Score=60.39 Aligned_cols=122 Identities=8% Similarity=0.026 Sum_probs=96.1
Q ss_pred HhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--H
Q 013323 52 TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV-CGKCKNS--D 128 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~--~ 128 (445)
...|++++|...++...+.. +.+...|..+-..+...|++++|...|+...+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45788888998888877653 2467788888899999999999999999988754 2367778888888 7789998 9
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
+|...|++..... +.+...|..+...+...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988753 2346788889999999999999999999988853
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00035 Score=52.77 Aligned_cols=96 Identities=7% Similarity=-0.026 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 157 (445)
.+...-..+.+.|++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|+..|++..+.+ +.+...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34455556667777777777777776643 2356677777777777777777777777766543 224566777777777
Q ss_pred HcCChhhHHHHHHHHHHc
Q 013323 158 AAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 158 ~~g~~~~a~~~~~~m~~~ 175 (445)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777664
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.92 E-value=0.00021 Score=64.47 Aligned_cols=128 Identities=7% Similarity=-0.113 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----------------RDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (445)
...|..+-..+.+.|++++|...|++..+.. |+ ...|..+-.++.+.|++++|...|+...+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666666777777777777777766543 22 35555666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhH-HHHHHHH
Q 013323 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV-YAIVRDM 172 (445)
Q Consensus 105 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a-~~~~~~m 172 (445)
.. +.+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+.+.|+.+++ ..+|+.|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2345566666666666666666666666665532 12345555566666666666555 3344444
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.88 E-value=0.008 Score=53.75 Aligned_cols=233 Identities=9% Similarity=0.041 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT-RDLFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
++.+-....+.+..++|+++++.+...+ |+ ...|+.--..+...+ .+++++.+++.+.... +-+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3333344444556679999999998864 54 445777666666677 5999999999999876 24677888877777
Q ss_pred Hcc-C-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChh--------hHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 013323 122 GKC-K-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD--------PVYAIVRDMTAAGAGLDKFCYAGLITAH 191 (445)
Q Consensus 122 ~~~-g-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~ 191 (445)
.+. + ++++++++++.+.+... .|...|+--.....+.|.++ ++++.++++.+... -|...|+.--..+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 776 6 88999999999997653 47778877666666666666 89999999988753 3677777766666
Q ss_pred HccCCC--c---hHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHH
Q 013323 192 TNKIPR--A---DDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHA 266 (445)
Q Consensus 192 ~~~~~~--~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~ 266 (445)
.+.+.. . .+.+...++..... .+-|...|+-+-..
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~----------------------------------------~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL----------------------------------------IPHNVSAWNYLRGF 251 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH----------------------------------------CTTCHHHHHHHHHH
T ss_pred HhccccccchHHHHHHHHHHHHHHHh----------------------------------------CCCCHHHHHHHHHH
Confidence 665531 1 12222222222211 14556666655555
Q ss_pred HHhcccH--------------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 013323 267 CAELKDV--------------------QAMETLLEMLKKDR-----KSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 267 ~~~~g~~--------------------~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 321 (445)
+.+.|+. .....+...+...+ -.+.......|...|...|+.++|.++++.+.+.
T Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 252 LKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 5444432 23333333332221 1357778888999999999999999999998755
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.88 E-value=0.00014 Score=63.86 Aligned_cols=99 Identities=8% Similarity=-0.025 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+...+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666677778888888888888877653 2367788888888888888888888888887653 235677888888
Q ss_pred HHHHcCChhhHHHHHHHHHHc
Q 013323 155 ACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~ 175 (445)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887653
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.84 E-value=0.00074 Score=49.54 Aligned_cols=95 Identities=7% Similarity=-0.036 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 157 (445)
.+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444444445555555555555554432 1234455555555555555555555555554432 123445555555555
Q ss_pred HcCChhhHHHHHHHHHH
Q 013323 158 AAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 158 ~~g~~~~a~~~~~~m~~ 174 (445)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.84 E-value=0.013 Score=51.50 Aligned_cols=224 Identities=8% Similarity=-0.038 Sum_probs=138.1
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCccHHHHHHHHHHH----HH
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLP-DVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNAC----AA 158 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~----~~ 158 (445)
..+....++|+.+++.+...+ | +..+||.--..+...| ++++++++++.+..... -+..+|+.--..+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 334455578999999999865 5 4567888888888888 99999999999987532 2455666544444 44
Q ss_pred c---CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchh
Q 013323 159 A---GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKE 235 (445)
Q Consensus 159 ~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (445)
. +++++++++++.+.+.. +-+-..|+.--..+.+.+....+.+...++.+....
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---------------------- 176 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---------------------- 176 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC----------------------
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC----------------------
Confidence 4 78999999999998864 235666665555555555542125666666665442
Q ss_pred hhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhccc------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 013323 236 ELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD------VQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDID 309 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 309 (445)
+.|...|+.--..+.+.+. ++++.+.++.+.... +-|...|+-+-..+.+.|+..
T Consensus 177 ------------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~ 237 (306)
T 3dra_A 177 ------------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSI 237 (306)
T ss_dssp ------------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCG
T ss_pred ------------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCCh
Confidence 4566667665555555555 677777776665532 226666776666666666633
Q ss_pred h-HHHHHHHHHhCC--CCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHh
Q 013323 310 N-GHKVFEDYICSE--KFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNS 358 (445)
Q Consensus 310 ~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~ 358 (445)
. +..+...+...+ -..+...+..+.+ .|.+.|. ++|.++++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~s~~al~~la~----~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 238 TQLEEFSLQFVDLEKDQVTSSFALETLAK----IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGHHHHHTTEEGGGTEESCHHHHHHHHH----HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHH----HHHccCCHHHHHHHHHHHHh
Confidence 3 344444443322 1123444444444 3344455 566666666554
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.84 E-value=0.00042 Score=56.93 Aligned_cols=63 Identities=13% Similarity=0.003 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKK----YEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
..+++.+-..+...|++++|...+++... .|..| ...++..+-..+...|++++|...+++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555554433 11111 23344455555555555555555555443
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.82 E-value=0.008 Score=57.13 Aligned_cols=345 Identities=10% Similarity=-0.003 Sum_probs=181.6
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHhcCc-HhHHHHHHHHHHH-CCCC-CCHHHHHHHHHHHhc----CCChhHHHHH
Q 013323 28 GAEEYARRNY--ANNASEYNTVVTSLTSQRR-FFLLRDVYDDMML-DGVQ-PTRDLFHSLIVGTMK----GSRLQDTFFF 98 (445)
Q Consensus 28 ~~~~~~~~~~--~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~-~g~~-p~~~~~~~ll~~~~~----~~~~~~a~~~ 98 (445)
......++.+ .|++..|...+....+.+. .+.+..+|+.... .|.. ++...|...+..+.. .++.+.+..+
T Consensus 32 ~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~i 111 (493)
T 2uy1_A 32 SLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNG 111 (493)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHH
Confidence 4455555555 4899999999988888764 3556777877665 3533 366778888876543 4567888999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-------------ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC-C---
Q 013323 99 RDQMKANGFLPDVAVYNYLISVCG-------------KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG-Q--- 161 (445)
Q Consensus 99 ~~~m~~~g~~p~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g-~--- 161 (445)
|+.........-...|......-. ..+.+..|..+++.....--..+...|...+.--...+ .
T Consensus 112 y~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~ 191 (493)
T 2uy1_A 112 YMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGG 191 (493)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCH
T ss_pred HHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcc
Confidence 999887321111122222221100 01122233333333322000012234444443322211 0
Q ss_pred ---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhc
Q 013323 162 ---LDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238 (445)
Q Consensus 162 ---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (445)
.+.+..+|+++.... +.+...|-..+..+.+.|+. +.+..+++..... ..+..... ...... ..+..+
T Consensus 192 ~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~--~~ar~i~erAi~~-P~~~~l~~---~y~~~~--e~~~~~ 262 (493)
T 2uy1_A 192 RPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK--EKAKKVVERGIEM-SDGMFLSL---YYGLVM--DEEAVY 262 (493)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH-CCSSHHHH---HHHHHT--TCTHHH
T ss_pred hhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC-CCcHHHHH---HHHhhc--chhHHH
Confidence 233556677766642 33455555555555555543 6777777766655 22111100 000000 000000
Q ss_pred -chhhhh--HHhhhcC--cccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhhHH
Q 013323 239 -NLPTAE--YVHRRGG--FLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLH-SGDIDNGH 312 (445)
Q Consensus 239 -~~~~~~--~~~~~~g--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~ 312 (445)
.+.... ......+ ........|...+....+.++++.|..+|+.. +.. ..+..+|......-.. .++.+.|.
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHH
Confidence 000000 0000000 00112345777777777888999999999988 321 1233444322222222 34799999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHH
Q 013323 313 KVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWD 391 (445)
Q Consensus 313 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~ 391 (445)
.+|+...+.- .-++..+...++ -..+.|. +.|..+|+... .....|...+..-. ..|+.+.+..+++
T Consensus 341 ~ife~al~~~-~~~~~~~~~yid----~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~--~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 341 NIFSSGLLKH-PDSTLLKEEFFL----FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEF--MVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHH----HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHH--HHSCHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 9999988762 112444555555 2345666 88999999973 13556777776555 7899999999998
Q ss_pred HHHH
Q 013323 392 LMQA 395 (445)
Q Consensus 392 ~m~~ 395 (445)
++..
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8873
No 138
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.0008 Score=49.38 Aligned_cols=100 Identities=13% Similarity=-0.027 Sum_probs=85.7
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
++..|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45677888889999999999999999988753 2367788888889999999999999999998764 246788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYE 141 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g 141 (445)
++.+.|++++|...|++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999988753
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.81 E-value=0.00025 Score=58.33 Aligned_cols=157 Identities=11% Similarity=-0.017 Sum_probs=104.3
Q ss_pred HhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCC
Q 013323 52 TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKA----NGFLP-DVAVYNYLISVCGKCKN 126 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~ 126 (445)
...|++++|.+.++.+... .......+..+-..+...|++++|...+++..+ .+..| ...+++.+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678889998855555432 122455677788888889999999999888765 22222 34577888888899999
Q ss_pred HHHHHHHHHHHHhC----CCCc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHccC
Q 013323 127 SDQAIRIFEEMKKY----EVKP--NGQTYVCLLNACAAAGQLDPVYAIVRDMTAA---GAGLD--KFCYAGLITAHTNKI 195 (445)
Q Consensus 127 ~~~a~~~~~~m~~~----g~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~--~~~~~~li~~~~~~~ 195 (445)
+++|...+++.... +-.| ....+..+-..+...|++++|...+++..+. .-.+. ..++..+-..+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999988876542 2112 2456777888888899999999998887642 11111 223455666677777
Q ss_pred CCchHHHHHHHHHHHH
Q 013323 196 PRADDTATKIIELVEQ 211 (445)
Q Consensus 196 ~~~~~~a~~~~~~~~~ 211 (445)
+. +.|...++....
T Consensus 162 ~~--~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NL--LEAQQHWLRARD 175 (203)
T ss_dssp CH--HHHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHH
Confidence 65 777777766543
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.81 E-value=0.0014 Score=51.56 Aligned_cols=96 Identities=9% Similarity=0.007 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 157 (445)
.|..+-..+...|++++|...|+...+.. +.+..+|..+..++...|++++|...|++..... +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555666677777777776666543 2345666666666666677777777666665532 224556666666666
Q ss_pred HcCChhhHHHHHHHHHHc
Q 013323 158 AAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 158 ~~g~~~~a~~~~~~m~~~ 175 (445)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 666666666666666554
No 141
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.80 E-value=0.00021 Score=53.79 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--Ccc----HHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV--KPN----GQTYVCL 152 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~y~~l 152 (445)
|..+-..+...|++++|...|+...+.. +.+...+..+...+...|++++|...|++...... .++ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444455555555555444432 12344445555555555555555555555443210 011 3445555
Q ss_pred HHHHHHcCChhhHHHHHHHHHHc
Q 013323 153 LNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
...+.+.|++++|...|+...+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555555555555555555543
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.79 E-value=0.00028 Score=55.22 Aligned_cols=104 Identities=11% Similarity=-0.064 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...|..+-..+.+.|++++|...|+...... +-+...|..+-.++...|++++|...|+...+.. +-+...|..+-.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45567777888999999999999999998864 2367788889999999999999999999999865 235778899999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNGQ 147 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 147 (445)
+|.+.|++++|...|++..+. .||..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999875 35543
No 143
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00056 Score=51.63 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
..|...=..+.+.|++++|++.|++..+.. +.+...|..+-.++.+.|++++|...|+...+.+ +.+...|..+-.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456666678899999999999999988754 2367788889999999999999999999998865 24578899999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCcc-HHHHHH
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPN-GQTYVC 151 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~ 151 (445)
...|++++|.+.|++..+. .|+ ...+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~~a~~~ 120 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNEEAREG 120 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCHHHHHH
Confidence 9999999999999998874 354 334433
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.79 E-value=0.00025 Score=51.68 Aligned_cols=96 Identities=7% Similarity=-0.091 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP--DVAVYNYLIS 119 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~ 119 (445)
..|..+-..+.+.|++++|...|++..+.. +.+...|..+-..+...|++++|...|++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344444455555555555555555554432 1233444444444445555555555555544432 11 2444444445
Q ss_pred HHHcc-CCHHHHHHHHHHHHh
Q 013323 120 VCGKC-KNSDQAIRIFEEMKK 139 (445)
Q Consensus 120 ~~~~~-g~~~~a~~~~~~m~~ 139 (445)
++.+. |++++|.+.|+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 55555 555555555554443
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.79 E-value=0.00054 Score=52.26 Aligned_cols=98 Identities=8% Similarity=-0.021 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+...|..+-..+...|++++|...|+...+.. +.+...|..+-.++...|++++|...|++..... +.+...|..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45566666666677777777777777766543 2346667777777777777777777777766543 224566777777
Q ss_pred HHHHcCChhhHHHHHHHHHH
Q 013323 155 ACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~ 174 (445)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777655
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.79 E-value=0.00031 Score=54.82 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 157 (445)
.+..+-..+.+.|++++|...|+...... +.+...|..+-.+|.+.|++++|...|++..... +.+...|..+-.++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 44555556667777777777777776543 2356667777777777777777777777776542 124566677777777
Q ss_pred HcCChhhHHHHHHHHHHc
Q 013323 158 AAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 158 ~~g~~~~a~~~~~~m~~~ 175 (445)
..|++++|...|+...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776653
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.78 E-value=0.00039 Score=50.61 Aligned_cols=99 Identities=5% Similarity=-0.061 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc--cHHHHHHHH
Q 013323 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP--NGQTYVCLL 153 (445)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~y~~li 153 (445)
...|..+-..+.+.|++++|...|+...+.. +.+...|..+-..+.+.|++++|...|++..+.. +. +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 4456677778889999999999999998764 3467889999999999999999999999998763 22 578899999
Q ss_pred HHHHHc-CChhhHHHHHHHHHHcC
Q 013323 154 NACAAA-GQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 154 ~~~~~~-g~~~~a~~~~~~m~~~g 176 (445)
..+.+. |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999998764
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.0017 Score=50.02 Aligned_cols=97 Identities=11% Similarity=-0.050 Sum_probs=46.9
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYN 115 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 115 (445)
+...|..+-..+...|+++.|.+.|++..+. .|+ ...|..+-..+...|++++|...++...+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555555555566666666666555443 243 2334444444445555555555555444432 12334444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
.+-.++...|++++|...|++...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444445555555555444443
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00085 Score=50.40 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACA 157 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~ 157 (445)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|+..|++..+.. +.+...|..+-.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445555666677777777776666543 2345667777777777777777777777666542 124556666777777
Q ss_pred HcCChhhHHHHHHHHHHc
Q 013323 158 AAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 158 ~~g~~~~a~~~~~~m~~~ 175 (445)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777766553
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.75 E-value=0.00041 Score=53.63 Aligned_cols=94 Identities=11% Similarity=-0.029 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
+..+-..+.+.|++++|...|+...... +.+...|..+-.+|.+.|++++|...|++..... +.+...|..+-.++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3334445566677777777777666543 2355666666666777777777777777666543 1244556666666777
Q ss_pred cCChhhHHHHHHHHHH
Q 013323 159 AGQLDPVYAIVRDMTA 174 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~ 174 (445)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766655
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.73 E-value=0.00068 Score=50.89 Aligned_cols=112 Identities=10% Similarity=-0.008 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC--CCC----HHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF--LPD----VAVY 114 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~ 114 (445)
...|..+-..+...|+++.|...|+...+.. +.+...+..+...+...|++++|...++...+... .++ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567788889999999999999999988764 34677888888899999999999999999886531 122 7788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 115 NYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 115 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
..+..++.+.|++++|.+.|+...+. .|+...+..+-..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 89999999999999999999999875 3565555554443
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.70 E-value=0.0011 Score=51.73 Aligned_cols=99 Identities=4% Similarity=-0.096 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...+..+-..+.+.|++++|...|+...... +.+...|..+-.++...|++++|...|+...+.. +.+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45667777888999999999999999988754 2367788888889999999999999999998864 235678888999
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~ 140 (445)
+|...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988763
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.69 E-value=0.0013 Score=52.10 Aligned_cols=99 Identities=9% Similarity=-0.058 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLN 154 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~ 154 (445)
+...|..+-..+.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|+..|++..+.. +-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666667777888888888888777654 2367778888888888888888888888877653 224677888888
Q ss_pred HHHHcCChhhHHHHHHHHHHc
Q 013323 155 ACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 155 ~~~~~g~~~~a~~~~~~m~~~ 175 (445)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888887764
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.68 E-value=0.00076 Score=50.96 Aligned_cols=104 Identities=12% Similarity=0.036 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCcc----HHHHHH
Q 013323 78 LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYE--VKPN----GQTYVC 151 (445)
Q Consensus 78 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~y~~ 151 (445)
.+..+-..+.+.|++++|...|++..+.. +-+...|+.+-.+|.+.|++++|+..|++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35556666777888888888888877653 2346777888888888888888888887766421 1111 235666
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHH
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCY 184 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 184 (445)
+-.++...|++++|.+.|++.... .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 777777888888888888877664 3454443
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.0015 Score=50.38 Aligned_cols=109 Identities=10% Similarity=-0.029 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHH
Q 013323 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD----VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTY 149 (445)
Q Consensus 74 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y 149 (445)
.+...+..+-..+...|++++|...|+...+.. |+ ...|..+-.+|.+.|++++|...+++..+.. +.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 467778888889999999999999999998864 66 6888999999999999999999999987753 2357788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-HHHHHHH
Q 013323 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLD-KFCYAGL 187 (445)
Q Consensus 150 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 187 (445)
..+..++...|++++|...|++..+.. |+ ...+..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 139 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 899999999999999999999998753 44 4444433
No 156
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.67 E-value=0.00076 Score=54.19 Aligned_cols=122 Identities=9% Similarity=0.001 Sum_probs=94.8
Q ss_pred HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH-HHHcCCh--
Q 013323 86 TMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA-CAAAGQL-- 162 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~-~~~~g~~-- 162 (445)
+...|++++|...++...+.. +.+...|..+-..|...|++++|...|++..... +.+...|..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345788999999999988754 3467899999999999999999999999987643 2356778888888 7789998
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 163 DPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 163 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
++|...|++..+.. +-+...+..+-..+...|+. +.|...++.....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANY--AQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccH--HHHHHHHHHHHhh
Confidence 99999999998864 23467777787888888866 8899998887654
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.65 E-value=0.001 Score=54.68 Aligned_cols=124 Identities=6% Similarity=-0.149 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCC-CCC--------------HHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV-QPT--------------RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (445)
...|..+-..+.+.|++++|.+.|++..+..- .|+ ...|..+-.++.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455666677777888888888877765321 110 145555555566666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHH
Q 013323 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166 (445)
Q Consensus 106 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~ 166 (445)
. +.+...|..+-.+|...|++++|...|++..+.. +-+...+..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345556666666666666666666666655432 113444555555555544444444
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.64 E-value=0.0012 Score=50.22 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=86.8
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
..+...|..+-..+...|++++|...|+...+.. +.+...|..+-..+...|++++|...++...+.. +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3567788888999999999999999999988764 2357788888999999999999999999998865 2467889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~ 139 (445)
-.++...|++++|...|++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.0018 Score=48.56 Aligned_cols=98 Identities=9% Similarity=0.006 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|...|+...+.. +.+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4566777788899999999999999988754 2367788899999999999999999999999865 2457889999999
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 013323 121 CGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~ 140 (445)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.63 E-value=0.00077 Score=52.01 Aligned_cols=99 Identities=5% Similarity=-0.084 Sum_probs=83.0
Q ss_pred ChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013323 40 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLIS 119 (445)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 119 (445)
+...+..+-..+.+.|++++|...|+...... +.+...|..+-.++.+.|++++|...|+...+.. +.+...|..+-.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455666778889999999999999988754 2367778888889999999999999999999865 245678888999
Q ss_pred HHHccCCHHHHHHHHHHHHhC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~ 140 (445)
+|...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.59 E-value=0.0005 Score=53.84 Aligned_cols=134 Identities=10% Similarity=-0.012 Sum_probs=94.6
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-C
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGV-QPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN----GFLP-D 110 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 110 (445)
..++..+-..+...|++++|.+.+++..+..- .++ ..++..+-..+...|++++|...+++..+. +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34667777888889999999998888765311 012 135677777788899999999988887642 1111 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKY----EVK-PNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
..++..+-..+...|++++|...+++..+. +-. ....++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777888888899999998888876532 211 1245677778888888999999888887655
No 162
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.57 E-value=0.00021 Score=53.13 Aligned_cols=103 Identities=12% Similarity=-0.048 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHH
Q 013323 89 GSRLQDTFFFRDQMKANG--FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166 (445)
Q Consensus 89 ~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~ 166 (445)
.|++++|...|++..+.+ -+.+...|..+-.+|.+.|++++|...|++..+... -+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 467778888888877753 122456677777888888888888888888776532 24667777888888888888888
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 013323 167 AIVRDMTAAG-AGLDKFCYAGLITAHT 192 (445)
Q Consensus 167 ~~~~~m~~~g-~~p~~~~~~~li~~~~ 192 (445)
..|++..+.. -.|+...|...+..+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 8888776642 2333444444554444
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.57 E-value=0.0011 Score=57.20 Aligned_cols=138 Identities=11% Similarity=-0.086 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD--VAVYNYLISVCG 122 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~ 122 (445)
-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...+.. .|. ...+..+-.++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 345678889999999999999887644 654444444457889999999999998555432 111 246777888999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPN--GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 187 (445)
+.|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++.... |+......|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 99999999999999985443253 4466777788889999999999999999864 554444444
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.56 E-value=0.0015 Score=57.19 Aligned_cols=98 Identities=9% Similarity=-0.121 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
+...+..+-..+.+.|++++|...|++..... +-+...|..+-.++.+.|++++|...+++..+.. +-+...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56678888899999999999999999988753 2267889999999999999999999999988753 235677788888
Q ss_pred HHHccCCCchHHHHHHHHHHHH
Q 013323 190 AHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
++...|+. +.|...++....
T Consensus 81 ~~~~~g~~--~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESY--DEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHcCCH--HHHHHHHHHHHH
Confidence 88888866 888888877654
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.55 E-value=0.0027 Score=57.15 Aligned_cols=98 Identities=10% Similarity=-0.066 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc--------------HHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN--------------GQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
...|..+-..|.+.|++++|...|++.....-... ...|..+-.++.+.|++++|...|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666677777777777777777777665321111 3667777777777777777777777776643
Q ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 177 AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 177 ~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
+.+...+..+-.++...|+. +.|...++....
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~ 258 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDF--ELARADFQKVLQ 258 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
Confidence 22455555565666666654 666666665544
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.54 E-value=0.0019 Score=51.07 Aligned_cols=100 Identities=5% Similarity=-0.046 Sum_probs=86.8
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
.+...|..+-..+.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|...|+...+.. +.+...|..+-
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356678888899999999999999999988754 2367788889999999999999999999999865 23588999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhC
Q 013323 119 SVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
.+|.+.|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.52 E-value=0.0012 Score=62.72 Aligned_cols=160 Identities=8% Similarity=-0.022 Sum_probs=115.1
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSD 128 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 128 (445)
..+.+.|++++|.+.|++..+.. +-+...|..+-.++.+.|++++|...+++..+.. +.+..+|..+-.+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988753 2357789999999999999999999999999875 246788999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHH--HHHcCChhhHHHHHHH-----------HHHc-----CC-----CCCHHHHH
Q 013323 129 QAIRIFEEMKKYEVKPNGQTYVCLLNA--CAAAGQLDPVYAIVRD-----------MTAA-----GA-----GLDKFCYA 185 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~y~~li~~--~~~~g~~~~a~~~~~~-----------m~~~-----g~-----~p~~~~~~ 185 (445)
+|++.|++..+..- -+...+..+-.+ +.+.|++++|.+.+++ .... |. ..+.....
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 99999999877421 133455555555 8888999999999882 2110 00 12455667
Q ss_pred HHHHHHHccCCCchHHHHHHHHHHHH
Q 013323 186 GLITAHTNKIPRADDTATKIIELVEQ 211 (445)
Q Consensus 186 ~li~~~~~~~~~~~~~a~~~~~~~~~ 211 (445)
.++..+.+.+....+.+..++.....
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a~e 196 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQVKE 196 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 78888877777766666666655443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.018 Score=53.49 Aligned_cols=199 Identities=11% Similarity=0.023 Sum_probs=113.6
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCc-c---------------HHHHHHHHHHHHHcCChhhHHHHHHHHHHc-CCCCCHH
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKP-N---------------GQTYVCLLNACAAAGQLDPVYAIVRDMTAA-GAGLDKF 182 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ 182 (445)
.+.+.|++++|++.|....+..-.. + ...+..+...|...|++++|.+.+...... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3455666667776666665432110 0 123566777778888888888877776542 1112222
Q ss_pred ---HHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhH
Q 013323 183 ---CYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTV 259 (445)
Q Consensus 183 ---~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 259 (445)
.....+..+... ....+.+..+++...... ...+....-..+
T Consensus 93 ~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~----------------------------------~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQV-PDSLDDQIFVCEKSIEFA----------------------------------KREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHHCSC-CSCHHHHHHHHHHHHHHH----------------------------------HHSSCCSSHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH----------------------------------HHhCccHHHHHH
Confidence 222223322221 113356666655543321 000111223456
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhC--C--CCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCH----H
Q 013323 260 YHVAFHACAELKDVQAMETLLEMLKKD--R--KSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS--EKFPPA----E 328 (445)
Q Consensus 260 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~----~ 328 (445)
+..+...+...|++++|..++...... + -.| ...+|..++..|...|++++|..+++..... .+..+. .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778889999999999999999877543 2 122 2457888999999999999999999887653 222122 2
Q ss_pred HHHHHHHhHhhcCChhhH-HHHHHHHHHHH
Q 013323 329 LYATLVEGAMFGYTPKGM-QLAQDTLVNMN 357 (445)
Q Consensus 329 ~~~~li~~~~~~~~~~g~-~~a~~~~~~m~ 357 (445)
.+..+.. .+...+. +.|...|.+..
T Consensus 218 ~~~~~g~----~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGI----LHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHH----HTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHhHHHHHHHHHHHH
Confidence 2222222 3556665 77766665543
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.45 E-value=0.0062 Score=52.61 Aligned_cols=199 Identities=9% Similarity=-0.022 Sum_probs=115.7
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHHHhCCCCcc---------------
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPDVAVYNYL-------ISVCGKCKNSDQAIRIFEEMKKYEVKPN--------------- 145 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 145 (445)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.+...+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677888888888877754 1235666666 3444444444444444433322 2221
Q ss_pred -------HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccc
Q 013323 146 -------GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 218 (445)
Q Consensus 146 -------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 218 (445)
...+-.....+...|++++|.++|+.+...+ |+....-.+-..+.+.++. +.+...++.... ++
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~--~dA~~~l~~a~~---~~-- 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERW--TDVIDQVKSAGK---WP-- 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCH--HHHHHHHTTGGG---CS--
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCH--HHHHHHHHHhhc---cC--
Confidence 1223445566777788888888887776643 4333222222234444544 666666642111 00
Q ss_pred cccccccchhhcccchhhhcchhhhhHHhhhcCcccC--chhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC--HHH
Q 013323 219 ETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSR--LLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPD--VYI 294 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~ 294 (445)
.| ....+..+-.++...|++++|...|++.......|. ...
T Consensus 166 -----------------------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da 210 (282)
T 4f3v_A 166 -----------------------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAI 210 (282)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHH
T ss_pred -----------------------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHH
Confidence 01 122455677778889999999999998775433254 224
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 295 VMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 295 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
....-.++.+.|+.++|..+|+++... .|+...+..|..
T Consensus 211 ~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL~~ 249 (282)
T 4f3v_A 211 AWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHhC
Confidence 455667788899999999999998876 355555555544
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.43 E-value=0.0026 Score=47.67 Aligned_cols=87 Identities=7% Similarity=-0.093 Sum_probs=37.4
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTR----DLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD----VAVYNYLISV 120 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~ 120 (445)
..+.+.|++++|.+.|+...+.. |+. ..+..+-.++.+.|++++|...|+...+.. |+ ..++..+-.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 33444555555555555544421 111 233333344444444444444444444322 21 2334444444
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 013323 121 CGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~ 139 (445)
+.+.|++++|...|+....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444443
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.42 E-value=0.0012 Score=49.40 Aligned_cols=94 Identities=10% Similarity=0.002 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK 123 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 123 (445)
+..+-..+.+.|++++|...|+...+.. +-+...|..+-.++...|++++|...|+...+.. +-+...+..+-.++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344445555666666666666655532 1144445555555555666666666666555533 1234455555555666
Q ss_pred cCCHHHHHHHHHHHHh
Q 013323 124 CKNSDQAIRIFEEMKK 139 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~ 139 (445)
.|++++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655543
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0079 Score=55.95 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 257 LTVYHVAFHACAELKDVQAMETLLEMLKKD----RKSPD--VYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
..+|..++..|...|++++|..+++..... +.+|. ...+..+...+...|++++|...|.+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346777788888888888888888765432 11111 23556666677778888888777766543
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.37 E-value=0.002 Score=48.54 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCCC----HHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG--FLPD----VAVYN 115 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~ 115 (445)
.+|..+=..+.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|.+.++...+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666678889999999999999988753 2356778888899999999999999999987642 1122 24677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVC 151 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~ 151 (445)
.+-.++...|++++|++.|++.... .||..+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 7888899999999999999988763 466655443
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.36 E-value=0.00039 Score=51.63 Aligned_cols=104 Identities=9% Similarity=-0.061 Sum_probs=75.0
Q ss_pred hcCcHhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 013323 53 SQRRFFLLRDVYDDMMLDGV-QP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 130 (445)
..|++++|+..|++..+.+. .| +...|..+-..+.+.|++++|...|++..+.. +-+..++..+-.++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46888999999999887541 13 34567888888999999999999999998865 23578889999999999999999
Q ss_pred HHHHHHHHhCC-CCccHHHHHHHHHHHH
Q 013323 131 IRIFEEMKKYE-VKPNGQTYVCLLNACA 157 (445)
Q Consensus 131 ~~~~~~m~~~g-~~p~~~~y~~li~~~~ 157 (445)
...|++..... -.|+...|...+..+.
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999887642 2233444444444443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.36 E-value=0.0022 Score=48.06 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=73.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc----HHHHHHHH
Q 013323 82 LIVGTMKGSRLQDTFFFRDQMKANGFLPD-V---AVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPN----GQTYVCLL 153 (445)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~y~~li 153 (445)
+-..+.+.|++++|...|+...+.. |+ . ..+..+-.++.+.|++++|...|+...... |+ ...+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445678899999999999988754 33 2 477778888999999999999999987743 33 56788888
Q ss_pred HHHHHcCChhhHHHHHHHHHHcC
Q 013323 154 NACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
.++...|++++|...|+...+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88999999999999999988763
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.34 E-value=0.0018 Score=48.29 Aligned_cols=95 Identities=8% Similarity=-0.007 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
+..+-..+.+.|++++|...|+...+.. +.+...|..+-.++.+.|++++|+..|++..+... -+...|..+...+.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4445566788999999999999999864 23688899999999999999999999999887531 257788999999999
Q ss_pred cCChhhHHHHHHHHHHc
Q 013323 159 AGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~~ 175 (445)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.19 E-value=0.0038 Score=58.87 Aligned_cols=122 Identities=10% Similarity=-0.077 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----------------RDLFHSLIVGTMKGSRLQDTFFFRDQMKA 104 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (445)
...|..+-..+.+.|+++.|...|++..+.. |+ ...|..+-.++.+.|++++|...++...+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3355566666777777777777777766532 22 34555566666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHH
Q 013323 105 NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVY 166 (445)
Q Consensus 105 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~ 166 (445)
.. +.+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-..+.+.++.+++.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2245566666666666666666666666665532 113345555555555555555443
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.17 E-value=0.014 Score=47.66 Aligned_cols=126 Identities=12% Similarity=-0.025 Sum_probs=70.7
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-CCC--------------HH
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF-LPD--------------VA 112 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~--------------~~ 112 (445)
+......|+++.+.+.|+.-.... ......+..+-..+.+.|++++|...|++..+..- .|+ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 333444555555555554222110 01233455566667777888888888887776421 110 25
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+|..+-.+|.+.|++++|+..++...... +.+...|..+-.++...|++++|...|++..+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 66667777777777777777777766542 234566777777777777777777777776654
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.14 E-value=0.003 Score=59.76 Aligned_cols=124 Identities=4% Similarity=-0.120 Sum_probs=62.5
Q ss_pred HHhcCcHhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHhcCCChhHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 013323 51 LTSQRRFFLLRDVYDDMMLD---GVQP----TRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-----G-FLPD-VAVYNY 116 (445)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ 116 (445)
+...|++++|..++++..+. -+-| ...+++.|..+|...|++++|..++++..+. | --|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33456666666666554431 1111 1224556666666666666666666654421 2 0122 345666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh-----CCC-Ccc-HHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 117 LISVCGKCKNSDQAIRIFEEMKK-----YEV-KPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 117 ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
|-..|...|++++|+.++++... .|- .|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655432 121 121 23344455555555566666666666544
No 180
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.14 E-value=0.13 Score=45.93 Aligned_cols=175 Identities=9% Similarity=-0.015 Sum_probs=112.0
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHc-C-Chhh
Q 013323 88 KGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK-NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA-G-QLDP 164 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~-g-~~~~ 164 (445)
+.+..++|+++++.+...+ +-+..+||.--..+...| .+++++.+++.+..... -+..+|+.--..+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 3445568999999999865 234667888777777778 59999999999998653 3677888877777776 6 8899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCc---h---HHHHHHHHHHHHhcCCccccccccccchhhcccchhhhc
Q 013323 165 VYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRA---D---DTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELY 238 (445)
Q Consensus 165 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~---~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (445)
++++++.+.+... -+-..|+.--..+.+.+..+ . ..+...++.+....
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d------------------------- 197 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD------------------------- 197 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------------------------
Confidence 9999999987542 25555554333332222221 0 13334444333321
Q ss_pred chhhhhHHhhhcCcccCchhHHHHHHHHHHhccc-------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 013323 239 NLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKD-------VQAMETLLEMLKKDRKSP-DVYIVMQNIRCYLHSGD 307 (445)
Q Consensus 239 ~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 307 (445)
+.|...|+..-..+.+.++ ++++.+.+...... .| |...|+-+-..+.+.|+
T Consensus 198 ---------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 198 ---------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp ---------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred ---------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 5566677776666666664 56677676666552 34 56666655555555554
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.09 E-value=0.033 Score=42.48 Aligned_cols=113 Identities=9% Similarity=-0.037 Sum_probs=91.4
Q ss_pred cCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHH
Q 013323 54 QRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGK----CKNSDQ 129 (445)
Q Consensus 54 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~ 129 (445)
.+++++|++.|++-.+.|. |+.. |-..+...+..+.|.+.|+...+.| +...+..|-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4578899999999988873 4444 5566677778888999999998875 56777788888887 789999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHH----cCChhhHHHHHHHHHHcCC
Q 013323 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAA----AGQLDPVYAIVRDMTAAGA 177 (445)
Q Consensus 130 a~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 177 (445)
|..+|++..+.| +...+..+-..|.. .++.++|...|+...+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998865 56777888888888 7899999999999888763
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.06 E-value=0.0067 Score=47.14 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=34.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-Ccc----HHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEV-KPN----GQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
++..+-..+...|++++|...+++..+..- .++ ..++..+-..+...|++++|...+++..+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555566666666666666665543200 001 13556666666666777776666666543
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.01 E-value=0.0087 Score=47.06 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
..+|..+-.+|.+.|++++|+..++...... +.+...|..+-.++...|++++|...|+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888888999999999999998887753 235778888889999999999999999888775
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.88 E-value=0.0096 Score=54.29 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 111 VAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
..+|+.+-.+|.+.|++++|+..+++..+.. +-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4455555566666666666666666655532 123455555566666666666666666665553
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0078 Score=43.47 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 76 RDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 76 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
...|..+-..+.+.|++++|...|+...+.. +.+...|..+-.++.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555556666666666666666665543 234556666666666667777777766666653
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.81 E-value=0.011 Score=43.23 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 94 DTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 94 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
.+...|+...+.. +.+...|..+-..|.+.|++++|...|++..... +.+...|..+-.++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677766643 2356777778888888888888888888877643 2346677778888888888888888888776
Q ss_pred H
Q 013323 174 A 174 (445)
Q Consensus 174 ~ 174 (445)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.80 E-value=0.043 Score=42.68 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCcc
Q 013323 84 VGTMKGSRLQDTFFFRDQMKANGFLPD-------------VAVYNYLISVCGKCKNSDQAIRIFEEMKKY-----EVKPN 145 (445)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~p~ 145 (445)
..+.+.|++++|...|+...+.. |+ ...|+.+-.++.+.|++++|+..+++..+. .+.|+
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 34455566666666666655432 22 238888888888889988888888887763 12454
Q ss_pred -HHHH----HHHHHHHHHcCChhhHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 013323 146 -GQTY----VCLLNACAAAGQLDPVYAIVRDMTA-----AGAGLDKFCYAGLI 188 (445)
Q Consensus 146 -~~~y----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li 188 (445)
...| ...-.++...|++++|+..|++..+ .|+.+........+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4567 7888888899999999999988865 35555554444443
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.79 E-value=0.0071 Score=57.27 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=78.2
Q ss_pred HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhh
Q 013323 85 GTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDP 164 (445)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 164 (445)
.+.+.|++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|+..+++..+.. +-+..+|..+-.+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4567899999999999998864 2358899999999999999999999999998864 2357889999999999999999
Q ss_pred HHHHHHHHHHcC
Q 013323 165 VYAIVRDMTAAG 176 (445)
Q Consensus 165 a~~~~~~m~~~g 176 (445)
|.+.|++..+..
T Consensus 93 A~~~~~~al~~~ 104 (477)
T 1wao_1 93 ALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999988753
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.78 E-value=0.0051 Score=55.33 Aligned_cols=113 Identities=16% Similarity=0.015 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013323 42 SEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVC 121 (445)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 121 (445)
..|..+-..+.+.|++++|...|++..+. .|+... +...++.+++...+ ....|+.+-.+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 33455555666667777777777765543 233321 11111111111111 012556666666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.+.|++++|+..|++..+.. +.+...|..+-.+|...|++++|...|++..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665532 12455666666666666666666666666544
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.70 E-value=0.054 Score=42.36 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-------GV---------QP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~---------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
+..|...=..+.+.|+++.|+..|...... .- .| +...|..+-.++.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666677888999999999999887764 00 12 23467778888999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH
Q 013323 104 ANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNG 146 (445)
Q Consensus 104 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 146 (445)
+.. +.+...|..+-.+|...|++++|...|+..... .|+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 864 346788999999999999999999999998874 4554
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.67 E-value=0.023 Score=53.67 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=65.2
Q ss_pred HhcCCChhHHHHHHHHHHHC--C-CCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCcc-HHHHHH
Q 013323 86 TMKGSRLQDTFFFRDQMKAN--G-FLP----DVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-----E-VKPN-GQTYVC 151 (445)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~--g-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~y~~ 151 (445)
+...|++++|..++++..+. . +-| ...+++.|..+|...|++++|+.++++...- | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45788899999888877642 1 112 2467888888999999999998888876531 2 1233 567888
Q ss_pred HHHHHHHcCChhhHHHHHHHHHH
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
+-..|...|++++|..++++..+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888899999999888887654
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.60 E-value=0.023 Score=51.74 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLD--------------GVQP-TRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN 105 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (445)
...|..+-..+.+.|++++|.+.|++..+. ...| +...|..+-.++.+.|++++|...+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345777778889999999999999988761 0223 3456788888899999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHH
Q 013323 106 GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVY 166 (445)
Q Consensus 106 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~ 166 (445)
. +.+...|..+-.+|.+.|++++|...|++..+. .| +...+..+-..+...++.+++.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 236788999999999999999999999998774 34 5566666666666666665554
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.52 E-value=0.4 Score=42.51 Aligned_cols=150 Identities=5% Similarity=-0.025 Sum_probs=104.2
Q ss_pred CChhhHHHHHHHH---HhcCcHh-HHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCC----------hhHHHHHHHHHH
Q 013323 39 NNASEYNTVVTSL---TSQRRFF-LLRDVYDDMMLDGVQPTRDL-FHSLIVGTMKGSR----------LQDTFFFRDQMK 103 (445)
Q Consensus 39 p~~~~~~~li~~~---~~~~~~~-~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~m~ 103 (445)
.-+..|..+...+ .+.|.++ +|+++++.+...+ |+..| |+.-=..+...+. +++++.+++.+.
T Consensus 24 ~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L 101 (331)
T 3dss_A 24 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 101 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 4455666655443 3456654 8999999998754 65444 5543222222222 678889999988
Q ss_pred HCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHcCCCCC
Q 013323 104 ANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ-LDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 104 ~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~ 180 (445)
... +-+..+|+.---.+.+.+ ++++++.+++.+.+... -|...|+.--......|. ++++++.++.+.+... -|
T Consensus 102 ~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N 178 (331)
T 3dss_A 102 RVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SN 178 (331)
T ss_dssp HHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CC
T ss_pred HhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CC
Confidence 754 347788888777777777 48999999999998653 478888888777788888 5899999999998753 36
Q ss_pred HHHHHHHHHHHHc
Q 013323 181 KFCYAGLITAHTN 193 (445)
Q Consensus 181 ~~~~~~li~~~~~ 193 (445)
...|+..-..+.+
T Consensus 179 ~SAW~~R~~ll~~ 191 (331)
T 3dss_A 179 YSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655444443
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.52 E-value=0.01 Score=53.30 Aligned_cols=112 Identities=8% Similarity=-0.096 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 79 FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
+..+-..+.+.|++++|...|+...+.. |+... +...++.+++...+ . ...|..+-.++.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHHH
Confidence 4444455566666666666666655432 33221 12222333322211 1 1378889999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHh
Q 013323 159 AGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQS 212 (445)
Q Consensus 159 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~ 212 (445)
.|++++|...++...+.. +.+...|..+-.++...|+. +.|...++.....
T Consensus 243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~--~~A~~~l~~al~l 293 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQM--DSARDDFRKAQKY 293 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH--HHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 999999999999998853 23677888888899998876 8898888876543
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.49 E-value=0.044 Score=51.53 Aligned_cols=61 Identities=8% Similarity=-0.093 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 147 QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 147 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
..|..+-.+|.+.|++++|+..|++..+.. +.+...|..+-.++...|+. +.|...|+...
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~--~~A~~~~~~al 378 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEF--ESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCH--HHHHHHHHHHH
Confidence 444555555555555555555555554432 11344444444444444433 44554444443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0045 Score=44.82 Aligned_cols=94 Identities=10% Similarity=0.008 Sum_probs=70.8
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-------H
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPD-------V 111 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~ 111 (445)
++...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|...|+...+.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 456678888899999999999999999988753 2367788888889999999999999999998754 54 4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFE 135 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~ 135 (445)
..+..+-.++...|+.+.|...|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 445555555555555555444333
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.35 E-value=0.04 Score=37.84 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=10.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEM 137 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m 137 (445)
++..+-.++.+.|++++|...|++.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333444444444444444444433
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.29 E-value=0.063 Score=41.76 Aligned_cols=95 Identities=7% Similarity=-0.080 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHhcCCChhHHHHHHHHHHHC----
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT--------R-----DLFHSLIVGTMKGSRLQDTFFFRDQMKAN---- 105 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---- 105 (445)
.+...-..+.+.|++++|++.|+...+.. |+ . ..|..+-.++.+.|++++|...++...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34455567788999999999999987743 33 2 27888888999999999999999999874
Q ss_pred -CCCCC-HHHH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 106 -GFLPD-VAVY----NYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 106 -g~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
.+.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12465 4577 8888999999999999999998864
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.21 E-value=0.064 Score=36.72 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
+...|..+-..+.+.|++++|...|++..+.. +.+...|..+-..+.+.|++++|...|++..+.. +.+...+..+-.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35677888888999999999999999987653 2357788899999999999999999999988753 123444444444
Q ss_pred HH
Q 013323 190 AH 191 (445)
Q Consensus 190 ~~ 191 (445)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.18 E-value=0.035 Score=40.48 Aligned_cols=79 Identities=9% Similarity=0.006 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 59 LLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 59 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
.+++.|+...+.. +.+...|..+-..+...|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777766543 2356778888888899999999999999988754 2457788889999999999999999998876
Q ss_pred h
Q 013323 139 K 139 (445)
Q Consensus 139 ~ 139 (445)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.15 E-value=0.031 Score=39.69 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
+...|..+-.+|.+.|++++|...|++..+... -+...|..+-.+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777888888888877766431 2455677777777788888888877777654
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.94 E-value=0.032 Score=39.59 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
+...+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666666777777777777777776654 12455677777777777777777777776553
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.88 E-value=0.11 Score=39.45 Aligned_cols=116 Identities=8% Similarity=-0.225 Sum_probs=83.8
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHH
Q 013323 271 KDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLA 349 (445)
Q Consensus 271 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a 349 (445)
++.++|.+.|+...+.| .|+.. |-..|...+.+++|.++|+...+.| ++..+..|=..+..+..-.++ ++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 57889999999888877 44444 5566777788899999999988875 445555554433223333455 999
Q ss_pred HHHHHHHHhCCCCCCcchhhHHHHHhhccc----CCChhhHHHHHHHHHHCCCC
Q 013323 350 QDTLVNMNSRNIFLSPRMGSDLLLVAAGEK----SGGYTTANYIWDLMQARKIT 399 (445)
Q Consensus 350 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~g~~~~A~~~~~~m~~~~~~ 399 (445)
.+.|++..+.| ++..+..+-..|. . .+++++|...|++-.+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~--~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQY--AGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHH--HTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHH--CCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999998887 4555555555554 5 78999999999998887743
No 204
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.68 E-value=0.44 Score=35.46 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=57.4
Q ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 013323 255 RLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKF 324 (445)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 324 (445)
.+...+...+..+...|+-++..++...+.. +.+|+....-.+-.+|.+.|+..+|.+++.+.-+.|++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3455678888999999999999999998644 35678888888999999999999999999999988874
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.68 E-value=0.78 Score=41.08 Aligned_cols=151 Identities=6% Similarity=-0.071 Sum_probs=101.8
Q ss_pred HHhcCCCCChhhHHHHHHHHHhc-----CcHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh----cCC-ChhHHH---H
Q 013323 32 YARRNYANNASEYNTVVTSLTSQ-----RRFFLLRDVYDDMMLDGVQPTR-DLFHSLIVGTM----KGS-RLQDTF---F 97 (445)
Q Consensus 32 ~~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~----~~~-~~~~a~---~ 97 (445)
...+....+..+|...+.+.... ....+|.++|++..+. .|+- ..|..+--++. ... ...... .
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 34455677899999999766542 3457899999998875 4652 33333222221 111 111111 1
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 98 FRDQMKAN-GFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 98 ~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
.++..... .-+.+..+|.++-..+...|++++|...+++....+ |+...|..+-..+...|++++|.+.|++....
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL- 339 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL- 339 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 22221111 224678888888777888899999999999999875 88888888888889999999999999988885
Q ss_pred CCCCHHHHHHHH
Q 013323 177 AGLDKFCYAGLI 188 (445)
Q Consensus 177 ~~p~~~~~~~li 188 (445)
.|...||...=
T Consensus 340 -~P~~~t~~~~~ 350 (372)
T 3ly7_A 340 -RPGANTLYWIE 350 (372)
T ss_dssp -SCSHHHHHHHH
T ss_pred -CCCcChHHHHh
Confidence 47776665443
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.49 E-value=0.057 Score=50.13 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=67.0
Q ss_pred cCCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCcc-HHHHHHHH
Q 013323 88 KGSRLQDTFFFRDQMKAN---GFLPD----VAVYNYLISVCGKCKNSDQAIRIFEEMKK-----YE-VKPN-GQTYVCLL 153 (445)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~-~~~y~~li 153 (445)
..|++++|..++++..+. -+-|+ ..+++.|..+|...|++++|+.++++... .| -.|+ ..+|+.+-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467889999999887642 12232 46789999999999999999999988753 12 2333 56799999
Q ss_pred HHHHHcCChhhHHHHHHHHHH
Q 013323 154 NACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~ 174 (445)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.43 E-value=1 Score=43.38 Aligned_cols=127 Identities=6% Similarity=-0.039 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 57 FFLLRDVYDDMMLDGVQPT-RDLFHSLIVGTMKGSR----------LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 57 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
.++|++.++.+...+ |+ ...|+.-=.++...++ ++++.+.++.+.+.. +-+..+|+.---++.+.+
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 356677777777643 43 3345543333333344 677777777777654 235666776666666677
Q ss_pred --CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 126 --NSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAG-QLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 126 --~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
++++++++++++.+... -|...|+.--..+.+.| .++++++.++++.+... -+...|+..-
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~ 185 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRS 185 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHH
Confidence 55777777777776543 35666766666666666 66666666666665432 1344444333
No 208
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.43 E-value=1.3 Score=39.19 Aligned_cols=222 Identities=8% Similarity=0.014 Sum_probs=134.1
Q ss_pred cCCChh-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 88 KGSRLQ-DTFFFRDQMKANGFLPD-VAVYNYLISVCGKCKN----------SDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 88 ~~~~~~-~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
+.|.++ +|+.+++.+...+ |+ ..+||.-=..+...+. +++++.+++.+.... +-+..+|+.--..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455544 8999999999865 54 4556653333332222 678899999988754 2377888887777
Q ss_pred HHHcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccc
Q 013323 156 CAAAG--QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVS 233 (445)
Q Consensus 156 ~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (445)
+.+.+ .+++++.+++.+.+... -|-..|+.--..+...|.. .+.+...++.+....
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~-~~eel~~~~~~I~~~-------------------- 175 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVA-PAEELAFTDSLITRN-------------------- 175 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHC--------------------
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcC-HHHHHHHHHHHHHHC--------------------
Confidence 77777 48999999999998643 3566666555555555542 245555555554432
Q ss_pred hhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhc--------------ccHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 013323 234 KEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAEL--------------KDVQAMETLLEMLKKDRKSP-DVYIVMQN 298 (445)
Q Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 298 (445)
+.|...|+..-..+.+. +.++++.+.+...... .| |...|+-+
T Consensus 176 --------------------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~ 233 (331)
T 3dss_A 176 --------------------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYH 233 (331)
T ss_dssp --------------------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 45556666555544443 4577777777766652 35 66666644
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHh-hcCChhhH-HHHHHHHHHHHhC
Q 013323 299 IRCYLHS-----------GDIDNGHKVFEDYICSEKFPPAELYATLVEGAM-FGYTPKGM-QLAQDTLVNMNSR 359 (445)
Q Consensus 299 i~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~g~-~~a~~~~~~m~~~ 359 (445)
-..+.+. +.++++++.++++.+. .||. .|..+-.+++ .+....+. +++...+.++.+-
T Consensus 234 r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 234 RWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4444443 3567888888888875 3544 3432211110 01123344 6677777777653
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.39 E-value=0.086 Score=48.91 Aligned_cols=92 Identities=9% Similarity=0.062 Sum_probs=68.4
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCcc-HHH
Q 013323 83 IVGTMKGSRLQDTFFFRDQMKANG---FLP----DVAVYNYLISVCGKCKNSDQAIRIFEEMKK-----YE-VKPN-GQT 148 (445)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~g---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~-~~~ 148 (445)
+..+.+.|++++|..++++..+.. +.| ...+++.|..+|...|++++|+.++++... .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788999999998887531 222 246788899999999999999998887653 12 2233 567
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 149 YVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 149 y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
|+.+-..|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888999999999999988887654
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.28 E-value=0.065 Score=41.61 Aligned_cols=70 Identities=9% Similarity=-0.061 Sum_probs=34.8
Q ss_pred HhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh----------hHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 013323 52 TSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRL----------QDTFFFRDQMKANGFLP-DVAVYNYLISV 120 (445)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 120 (445)
.+.+.+++|.+.++...+.. +-+...|..+-.++...+++ ++|...|++..+.. | +...|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 34455666666666665543 12444455444444444433 35555555555432 2 34455555555
Q ss_pred HHcc
Q 013323 121 CGKC 124 (445)
Q Consensus 121 ~~~~ 124 (445)
|...
T Consensus 90 y~~l 93 (158)
T 1zu2_A 90 YTSF 93 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.01 E-value=0.084 Score=48.98 Aligned_cols=87 Identities=3% Similarity=-0.026 Sum_probs=67.8
Q ss_pred hcCcHhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 013323 53 SQRRFFLLRDVYDDMMLD---GVQPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-----G-FLPD-VAVYNYLI 118 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ll 118 (445)
..|++++|..++++..+. -+-|+ ..+++.|..+|...|++++|..++++..+. | --|+ ..++|.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999887652 12233 346899999999999999999999987642 3 1233 46799999
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 013323 119 SVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~ 139 (445)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987653
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.97 E-value=0.086 Score=48.93 Aligned_cols=93 Identities=6% Similarity=0.025 Sum_probs=72.8
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhcCCChhHHHHHHHHHHHC-----C-CCCC-H
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDG---VQPT----RDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-----G-FLPD-V 111 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~ 111 (445)
..+..+.+.|++++|.+++++..+.. +.|+ ..+++.+..+|...|++++|..++++..+. | --|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33566778899999999999887631 2232 346889999999999999999999987642 3 1233 4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
.+++.|-..|...|++++|+.++++..
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 679999999999999999999998765
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.93 E-value=0.059 Score=41.86 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=79.1
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHHHHhCCCCc-cHHHHHHHHHH
Q 013323 87 MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS----------DQAIRIFEEMKKYEVKP-NGQTYVCLLNA 155 (445)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~g~~p-~~~~y~~li~~ 155 (445)
.+.+.+++|.+.++...+.. +.+...|+.+-.++.+.+++ ++|+..|++..+. .| +...|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 34467888999999888765 34778888888888877664 5999999998875 34 46789999999
Q ss_pred HHHcC-----------ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 013323 156 CAAAG-----------QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHT 192 (445)
Q Consensus 156 ~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 192 (445)
|...| ++++|.+.|++..+. .|+...|...+...-
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 98764 899999999999885 588777777776553
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.99 Score=35.56 Aligned_cols=104 Identities=7% Similarity=-0.018 Sum_probs=78.9
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
.....+.|+++.|.++.+.+ -+...|..|-..+.+.|+++-|.+.|..... |..|.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456789999999998876 3678899999999999999999999988754 34466667778888
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 013323 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDM 172 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m 172 (445)
++..++-+.-...| -++.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 77776665555544 2667777777889999999888543
No 215
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.79 E-value=1.9 Score=41.61 Aligned_cols=99 Identities=4% Similarity=-0.029 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHH
Q 013323 57 FFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK-NSDQAIRI 133 (445)
Q Consensus 57 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~ 133 (445)
++++++.++.+.+..- -+..+|+.--.++.+.+ +++++.+.++.+.+.. +-+..+|+.--.++.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 6677777777766442 25556666666666666 5577777777777654 245666766666666666 66777777
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHH
Q 013323 134 FEEMKKYEVKPNGQTYVCLLNACAA 158 (445)
Q Consensus 134 ~~~m~~~g~~p~~~~y~~li~~~~~ 158 (445)
++++.+... -|...|+..-..+.+
T Consensus 167 ~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 167 TDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCccHHHHHHHHHHh
Confidence 777666542 255566655555444
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.77 E-value=0.81 Score=46.21 Aligned_cols=102 Identities=8% Similarity=0.010 Sum_probs=73.6
Q ss_pred HHHHhcCcHhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 013323 49 TSLTSQRRFFLLRD-VYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNS 127 (445)
Q Consensus 49 ~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 127 (445)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.++-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456889999877 55222 212334777788888899999887664221 113345678999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 128 DQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
+.|.++.+.+ .+...|..+-..+.+.|+++.|.++|..+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 9999986554 3678899999999999999999999998754
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.02 E-value=3.2 Score=37.13 Aligned_cols=78 Identities=8% Similarity=-0.047 Sum_probs=60.6
Q ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 013323 254 SRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333 (445)
Q Consensus 254 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 333 (445)
+.+..+|..+-..+...|++++|...++.....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5566778777777777799999999999888764 77777777777888899999999999877765 5677776554
Q ss_pred HH
Q 013323 334 VE 335 (445)
Q Consensus 334 i~ 335 (445)
=.
T Consensus 350 ~~ 351 (372)
T 3ly7_A 350 EN 351 (372)
T ss_dssp HH
T ss_pred hC
Confidence 43
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.85 E-value=1.5 Score=32.69 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=77.4
Q ss_pred hcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC-C----------------CCCCHHHHH
Q 013323 53 SQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-G----------------FLPDVAVYN 115 (445)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g----------------~~p~~~~~~ 115 (445)
-.|.+++..++..+..+. -+..-||-+|--....-+-+...++++.+-+. + ...+....+
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd 95 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 95 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence 346666666666666553 23444444444433333333333333332110 0 013455667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 116 YLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 116 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
..++.....|+-+.-.+++..+.. +-+|++...-.+-.+|.+.|+..++.+++.+..+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 778888888888888888888643 23678888888999999999999999999999998864
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.63 E-value=1.2 Score=34.07 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHHHcCChhhH
Q 013323 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK---NSDQAIRIFEEMKKYEVKP--NGQTYVCLLNACAAAGQLDPV 165 (445)
Q Consensus 91 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~y~~li~~~~~~g~~~~a 165 (445)
.+..+.+-|.+..+.|. ++..+.-.+--++++++ +.+++..+|++..+.+ .| +...+-.+--+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666664 67777666777778877 5668888888887754 24 344555566667888999999
Q ss_pred HHHHHHHHHc
Q 013323 166 YAIVRDMTAA 175 (445)
Q Consensus 166 ~~~~~~m~~~ 175 (445)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9988888875
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.44 E-value=0.71 Score=35.40 Aligned_cols=86 Identities=8% Similarity=0.157 Sum_probs=62.0
Q ss_pred cHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHH
Q 013323 56 RFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS---RLQDTFFFRDQMKANGFLP--DVAVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 56 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a 130 (445)
....+.+-|.+..+.|. ++..+--.+-.++++.+ +.+++..+|++..+.+ .| ....+=.|--+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34456666666666655 67777666667777777 6779999999998865 24 244444455667999999999
Q ss_pred HHHHHHHHhCCCCcc
Q 013323 131 IRIFEEMKKYEVKPN 145 (445)
Q Consensus 131 ~~~~~~m~~~g~~p~ 145 (445)
.+.++...+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 9999999874 453
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.33 E-value=0.53 Score=47.53 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCG 122 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 122 (445)
....++..+.+.|..+.|+++.+. |. .-+......|++++|+++.+.+ .+...|..|-..+.
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al 692 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHH
Confidence 337788888888999988877632 11 1123345678999998885433 56789999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTA 202 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a 202 (445)
+.++++.|++.|..+.. |..+...+...|+.+...++-+.....|- ++....++.+.|+. +.|
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~--~~a 755 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDI--QGA 755 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCH--HHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCH--HHH
Confidence 99999999999998864 55566666667777776666666655542 13333344455644 677
Q ss_pred HHHHHHHHH
Q 013323 203 TKIIELVEQ 211 (445)
Q Consensus 203 ~~~~~~~~~ 211 (445)
.+++..+.+
T Consensus 756 ~~~~~~~~~ 764 (814)
T 3mkq_A 756 KDLLIKSQR 764 (814)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 777666553
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.29 E-value=0.31 Score=33.87 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=22.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHH-HHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQ-TYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
+.+.|++++|...|++..+.. +.+.. .|..+-.++...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444443321 11223 344444444444444444444444443
No 223
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.12 E-value=1.3 Score=30.97 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=58.3
Q ss_pred HHHHHHhcc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 263 AFHACAELK-DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 263 li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
....|.+.. |.-++.+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++.+ +.+...+|..+++
T Consensus 15 y~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 15 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 334444555 66778888888888899999999999999999999999999999999877 2334567888887
No 224
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.45 E-value=1.1 Score=30.91 Aligned_cols=58 Identities=7% Similarity=0.102 Sum_probs=48.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 013323 83 IVGTMKGSRLQDTFFFRDQMKANGFLPDVA-VYNYLISVCGKCKNSDQAIRIFEEMKKYE 141 (445)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 141 (445)
...+.+.|++++|...|+...+.. +.+.. .|..+-.+|.+.|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345678899999999999998864 23567 88899999999999999999999998753
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.04 E-value=1.7 Score=30.03 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 92 LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
.++|..++++..+.. +-+......+-..+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555555533 123444444555555566666666666655553
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.92 E-value=1.2 Score=31.43 Aligned_cols=66 Identities=12% Similarity=-0.010 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKY------EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
+..-+-.|-..+.+.++++.|..+|+...+. +-.+....|..+..++.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344445666666777777777777665432 11234566777777777777777777777777653
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.51 E-value=2.3 Score=36.54 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHc-CCh
Q 013323 92 LQDTFFFRDQMKANGFLPD---VAVYNYLISVCGKC-----KNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAA-GQL 162 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~-g~~ 162 (445)
...|...+++..+. .|+ ...|..|...|.+. |+.++|.+.|++-.+.+-.-+..++...-..+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566667777664 466 56899999999994 99999999999998853222477888888888885 999
Q ss_pred hhHHHHHHHHHHcCCC--CCHHHHHHH
Q 013323 163 DPVYAIVRDMTAAGAG--LDKFCYAGL 187 (445)
Q Consensus 163 ~~a~~~~~~m~~~g~~--p~~~~~~~l 187 (445)
+++.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999997665 765544444
No 228
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.18 E-value=2.4 Score=31.39 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHHHHhcc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013323 263 AFHACAELK-DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVE 335 (445)
Q Consensus 263 li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 335 (445)
....|.+.. |.-+..+-++.+....+.|+..+..+.+.+|-+.+++..|.++|+-++.+ +.+....|..+++
T Consensus 58 y~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 58 WVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 344444555 66677888888888889999999999999999999999999999999877 3345667988887
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.11 E-value=4.6 Score=31.75 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=65.6
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChh
Q 013323 84 VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLD 163 (445)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~ 163 (445)
....+.|+++.|.++-+++ -+...|..|-+...+.|+++-|++.|..... |..+.--|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445678888888887665 3677888888888888888888888887764 566666666677777
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHH
Q 013323 164 PVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIE 207 (445)
Q Consensus 164 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~ 207 (445)
+...+-+.....|- ++.....+...|+. +.+.+++.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv--~~~i~lL~ 113 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNST--KERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCH--HHHHHHHH
Confidence 76655555554441 33334444445543 55555543
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.82 E-value=2.1 Score=29.55 Aligned_cols=68 Identities=7% Similarity=-0.040 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcC
Q 013323 108 LPDVAVYNYLISVCGKCKN---SDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAG 176 (445)
Q Consensus 108 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 176 (445)
+.|...+..+-.++...++ .++|..+|++..... +-+......+-..+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3567777777777765554 699999999998754 2356778888889999999999999999999864
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.75 E-value=1.6 Score=30.90 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 75 TRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG------FLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
+...+-.+-..+.+.++++.|...|+...+.- -.+...++..|-.++.+.|+++.|..++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444555566667777777777777665420 124566777888888888888888888887765
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.66 E-value=3.5 Score=31.38 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=24.0
Q ss_pred CChhhHHHHHHHHHhcCcH------hHHHHHHHHHHHCCCCCC
Q 013323 39 NNASEYNTVVTSLTSQRRF------FLLRDVYDDMMLDGVQPT 75 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~ 75 (445)
-|..+|-..+...-+.|+. ++..++|++-.. .++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCcc
Confidence 4567777777777777777 677777776654 34554
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.45 E-value=2.1 Score=38.88 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHh---cCCChhHHHHHHHHHHHC--C-CCCCH------------------HHHHHHHHHHHccCCHHHH
Q 013323 75 TRDLFHSLIVGTM---KGSRLQDTFFFRDQMKAN--G-FLPDV------------------AVYNYLISVCGKCKNSDQA 130 (445)
Q Consensus 75 ~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~--g-~~p~~------------------~~~~~ll~~~~~~g~~~~a 130 (445)
|...|..++.... ..|+.+.+...+++.... | +-++. .+...++..+...|+++++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3334555444322 346677777777666542 2 11111 1234466677789999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH-----cCCCCCHHHHHHHHHHH
Q 013323 131 IRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA-----AGAGLDKFCYAGLITAH 191 (445)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~ 191 (445)
...+....... +.+...|..+|.++.+.|+..+|++.|+.+.+ -|+.|+..+-...-..+
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99988887643 34778999999999999999999999998754 49999988755544433
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.41 E-value=16 Score=33.87 Aligned_cols=120 Identities=9% Similarity=0.062 Sum_probs=61.0
Q ss_pred CcHhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCCCHHH--HHHHHHHHHccCC
Q 013323 55 RRFFLLRDVYDDMML-----DGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKAN-GFLPDVAV--YNYLISVCGKCKN 126 (445)
Q Consensus 55 ~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~--~~~ll~~~~~~g~ 126 (445)
|+++.|++-+-.+.+ ....-+......++..|...++++...+.+..+.+. |..+...+ -+.++......+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 677777777665553 223345666777888888888888887777666543 43222221 1222222222333
Q ss_pred HHHHH--HHHHHHHh--CC-CCc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 127 SDQAI--RIFEEMKK--YE-VKP---NGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 127 ~~~a~--~~~~~m~~--~g-~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.+... .+.+.... .| +-. .......+...+-..|++.+|..++.++..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~ 165 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV 165 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22211 11111110 01 101 122334556666667777777777776654
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.86 E-value=5.1 Score=34.45 Aligned_cols=111 Identities=7% Similarity=-0.031 Sum_probs=80.5
Q ss_pred ChhhHHHHHH-HHHhc--Cc------HhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc-----CCChhHHHHHHHHH
Q 013323 40 NASEYNTVVT-SLTSQ--RR------FFLLRDVYDDMMLDGVQPT---RDLFHSLIVGTMK-----GSRLQDTFFFRDQM 102 (445)
Q Consensus 40 ~~~~~~~li~-~~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~m 102 (445)
....|..++. .+... |. ...|..++++..+ +.|+ -..|..+-..|.+ .|+.+.|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 3455666554 33332 33 3456666666655 3476 4578888888888 59999999999999
Q ss_pred HHCCCCC--CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--ccHHHHHHHHH
Q 013323 103 KANGFLP--DVAVYNYLISVCGKC-KNSDQAIRIFEEMKKYEVK--PNGQTYVCLLN 154 (445)
Q Consensus 103 ~~~g~~p--~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~~y~~li~ 154 (445)
.+.+ | +..++...-..+++. |+.+++.+.+++....... |+....+.+-+
T Consensus 231 L~Ln--P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 231 TRYC--SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHC--CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHhC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 9865 6 478888888989885 9999999999999987666 66555555443
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.73 E-value=2.3 Score=38.67 Aligned_cols=74 Identities=16% Similarity=0.011 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHHHHHH
Q 013323 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYIC-----SEKFPPAELYATL 333 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 333 (445)
....++.++...|+++++...+..+... -+.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4556777788899999999888877653 234788999999999999999999999998764 2899988764443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.71 E-value=3.7 Score=40.71 Aligned_cols=124 Identities=9% Similarity=0.072 Sum_probs=78.7
Q ss_pred HHHHHHHhcCc-HhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhcCCC-hhHHHHHHHHHHHC------CCCC-CHHH-
Q 013323 46 TVVTSLTSQRR-FFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSR-LQDTFFFRDQMKAN------GFLP-DVAV- 113 (445)
Q Consensus 46 ~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~-~~~a~~~~~~m~~~------g~~p-~~~~- 113 (445)
.++..+...++ .+.|.++|+.+.... |...+ ...++....+.++ --+|.+++.+..+. ...+ +...
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34455555666 588999999998864 43333 2344444444332 22344444443321 1111 1110
Q ss_pred --H---HHHH----HHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 114 --Y---NYLI----SVCGKCKNSDQAIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 114 --~---~~ll----~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
. ..|+ +.|...|+++.|+++-++-... .|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 1133 3456789999999999998774 455 6799999999999999999999999873
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.35 E-value=5.2 Score=29.40 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=9.7
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 013323 120 VCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~ 139 (445)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555544443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.12 E-value=4.6 Score=40.09 Aligned_cols=54 Identities=7% Similarity=-0.006 Sum_probs=45.3
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 013323 264 FHACAELKDVQAMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYI 319 (445)
Q Consensus 264 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 319 (445)
..-|...|+++.|..+-+.... ..|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4446678999999999888765 5675 5599999999999999999999999874
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.66 E-value=6.4 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 95 TFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 95 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
..+-++.+....+.|++.+..+.+++|-|.+++..|.++|+-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555544444
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.91 E-value=27 Score=32.28 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 013323 260 YHVAFHACAELKDVQAMETLLEMLKKD--RKSPD---VYIVMQNIRCYLHSGDIDNGHKVFEDYIC 320 (445)
Q Consensus 260 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 320 (445)
...+...+-..|++.+|..++..+... |..+. ...|...++.|...+++..|..++..+..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677788889999999999988643 32222 34677788999999999999999998754
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.53 E-value=12 Score=27.84 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 129 QAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
+..+-++.+...++.|++....+.+++|-|.+++..|..+|+-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 445555555566677777777777777777777777777777766542 22233455554
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.91 E-value=8.4 Score=29.35 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHhcCCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHccCCHHHHHHHHHHHHhCC
Q 013323 75 TRDLFHSLIVGTMKGSRL------QDTFFFRDQMKANGFLPDVA-VYNYLIS------VCGKCKNSDQAIRIFEEMKKYE 141 (445)
Q Consensus 75 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~ll~------~~~~~g~~~~a~~~~~~m~~~g 141 (445)
|..+|-..+...-+.|+. +...++|+.... .++|+.. .|..-|. .+...+++++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566777777777766777 777788887665 3455421 1111111 1123479999999999997643
Q ss_pred CCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 013323 142 VKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190 (445)
Q Consensus 142 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 190 (445)
-+- ...|-..-.--.+.|++.+|.+++......+-+| .....+.|.-
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 233 6777777777889999999999999999877553 4444444443
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.31 E-value=26 Score=29.59 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=78.1
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHhHhhcCC
Q 013323 265 HACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICS--EKFPPAELYATLVEGAMFGYT 342 (445)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~ 342 (445)
....+.|+++.+..-...-.+.. +-|...=..|+..+|-.|++++|.+-++...+. ...|...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34567788898887777655542 347888888999999999999999988887765 344556677777762
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCc-----chhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 343 PKGMQLAQDTLVNMNSRNIFLSP-----RMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 343 ~~g~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
+..=.+....+-.|.. .-...++.+......|+.++|..+-.+..+
T Consensus 78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 2222223333333322 123345555555578999999999888864
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.88 E-value=18 Score=26.51 Aligned_cols=83 Identities=13% Similarity=0.011 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCc--cHHHHHHHHHHHHHcCChhhH
Q 013323 91 RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQ---AIRIFEEMKKYEVKP--NGQTYVCLLNACAAAGQLDPV 165 (445)
Q Consensus 91 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~y~~li~~~~~~g~~~~a 165 (445)
.+..+.+-|......|. |+..+--.+--++.++..... ++.+++.....+ .| .....-.+--++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 44455566665555454 666666666667777776655 888888887764 23 344455677789999999999
Q ss_pred HHHHHHHHHc
Q 013323 166 YAIVRDMTAA 175 (445)
Q Consensus 166 ~~~~~~m~~~ 175 (445)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999885
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.32 E-value=11 Score=26.28 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQ 350 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~ 350 (445)
..++|.-|-+.+...+- ...+--+=+..+.+.|++++|..+.+.+ ..||...|-+|-. .+.|. +++.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce------~rlGl~s~le 89 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE------YRLGLGSALE 89 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH------HHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH------HhcccHHHHH
Confidence 47888888888877653 2222222345677899999999887644 4799999999976 67777 6666
Q ss_pred HHHHHHHhCC
Q 013323 351 DTLVNMNSRN 360 (445)
Q Consensus 351 ~~~~~m~~~~ 360 (445)
.-+.++..+|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 6666777766
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.43 E-value=75 Score=33.51 Aligned_cols=163 Identities=13% Similarity=0.038 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHhC-CCC-CC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEMLKKD-RKS-PD--VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATL 333 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~-p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 333 (445)
.-|..++..|-+.+.++.+.++-....+. +-. ++ ...|..++.++...|++++|...+-.+.....+ ......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 45788888899999888888777654443 212 22 225888999999999999999999888766443 4556666
Q ss_pred HHhHhh--------cCChhhH-HHHHHHHHHHHhCC-CCCCcchhhHHHHHhhcccCCChhhHHH-HHHHHHHCC----C
Q 013323 334 VEGAMF--------GYTPKGM-QLAQDTLVNMNSRN-IFLSPRMGSDLLLVAAGEKSGGYTTANY-IWDLMQARK----I 398 (445)
Q Consensus 334 i~~~~~--------~~~~~g~-~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~g~~~~A~~-~~~~m~~~~----~ 398 (445)
|..++. .+.-.|. +++.+++..--+.. ...+...|..++-++- ...|++.+|-. +|++..+.+ .
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~r-i~r~dyR~AA~vmYe~~~RL~~~~~~ 1056 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWR-YKHQNYRDAAAIIYEKLSRYISTTEL 1056 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHH-HHHHTTSCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhh-hccCChHHHHHHHHHHHHHhhhcccc
Confidence 654321 1222344 55556654432211 1112224555555553 35677776544 455554321 1
Q ss_pred -CC-----CHHHHHHHHhhhhccCCCCCCCch
Q 013323 399 -TP-----SLPAVEAYYNGLKDREVPADDPRL 424 (445)
Q Consensus 399 -~p-----~~~~~~~l~~~~~~~~~~~~a~~~ 424 (445)
.+ -...|-+.|+++.-.. +++|-.+
T Consensus 1057 ~~~~~~~~q~~~yL~~INaLslvd-~~~aWIl 1087 (1139)
T 4fhn_B 1057 IGKKERTFIIEHYLIVLNTLELLP-KEDTWIL 1087 (1139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSC-SSCCCCC
T ss_pred ccchhHHHHHHHHHHHHHHHhcCC-hhhCEEE
Confidence 11 1345777777775553 4455444
No 248
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.05 E-value=3.1 Score=35.31 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=54.4
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHH
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD---LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV---AVYNYLIS 119 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~ 119 (445)
+.+...++.|+++.+..++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++. .-. +.+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGA-TPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCC-CHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCC-CHHH
Confidence 4556667788876555444 445444322 1123344445566654 44455555654432 122 2334
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccH---HHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 120 VCGKCKNSDQAIRIFEEMKKYEVKPNG---QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
..++.|+.+- ++.+.+.|..++. ..++. +...+..|+. ++++.+.+.|..++
T Consensus 78 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~ 132 (285)
T 1wdy_A 78 LAAIAGSVKL----LKLFLSKGADVNECDFYGFTA-FMEAAVYGKV----KALKFLYKRGANVN 132 (285)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCccCcccCCH-HHHHHHhCCH----HHHHHHHHhCCCcc
Confidence 4445566543 3344445544432 22222 3334445553 34555555555443
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.79 E-value=36 Score=31.20 Aligned_cols=63 Identities=6% Similarity=-0.047 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 013323 112 AVYNYLISVCGKCKNSDQAIRIFEEMKKY--EVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 174 (445)
.+...+-..|.+.|++++|.+.|.++... +..--...|-.+|+.+...+++..+...+++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36677889999999999999999999864 3333467788899999999999999999988754
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.10 E-value=10 Score=26.35 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHH
Q 013323 272 DVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQ 350 (445)
Q Consensus 272 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~ 350 (445)
..++|.-|-+.+...+- ...+--+=+..+.+.|++++|.++.+.+ ..||...|-+|-. .+.|. +++.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce------~rlGl~s~le 88 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE------WHLGLGAALD 88 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH------HHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH------HhcccHHHHH
Confidence 47888888888877553 2222222345677899999998876543 4799999999876 56777 6666
Q ss_pred HHHHHHHhCC
Q 013323 351 DTLVNMNSRN 360 (445)
Q Consensus 351 ~~~~~m~~~~ 360 (445)
.-+.++..+|
T Consensus 89 ~rL~~la~sg 98 (115)
T 2uwj_G 89 RRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHhCC
Confidence 6666777776
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.64 E-value=3.9 Score=34.69 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=8.2
Q ss_pred HHHHHhcCCChhHHHHH
Q 013323 82 LIVGTMKGSRLQDTFFF 98 (445)
Q Consensus 82 ll~~~~~~~~~~~a~~~ 98 (445)
.+...++.|+.+.+..+
T Consensus 8 ~L~~A~~~g~~~~v~~L 24 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL 24 (285)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 34444556665544333
No 252
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.54 E-value=13 Score=31.67 Aligned_cols=113 Identities=5% Similarity=-0.118 Sum_probs=51.3
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcc
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV---AVYNYLISVCGKC 124 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~ 124 (445)
+...+..|+.+.+..++ +.|..++...-.+.+...+..|+.+-+.. +.+.|..++. .-++. +...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~-L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTA-LYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcH-HHHHHHc
Confidence 34445567765544443 44544433222334445556666654433 3444544332 22223 3344556
Q ss_pred CCHHHHHHHHHHHHhCCCCccHH---HHHHHHHHHHHcCChhhHHHHHHHHHHcCC
Q 013323 125 KNSDQAIRIFEEMKKYEVKPNGQ---TYVCLLNACAAAGQLDPVYAIVRDMTAAGA 177 (445)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 177 (445)
|+.+-+.-+++. |..++.. .|.+.+...+..|+.+ +.+.+.+.|.
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~ 153 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIP 153 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSC
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCC
Confidence 666544444433 4333322 2234455555556543 4444444443
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.93 E-value=1.5e+02 Score=31.24 Aligned_cols=142 Identities=11% Similarity=-0.019 Sum_probs=80.4
Q ss_pred HHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC----------------
Q 013323 46 TVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLP---------------- 109 (445)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p---------------- 109 (445)
.++..+...+..+.+.++..... -|...--.+-.++...|++++|.+.|++... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 45566666677766666544332 2333222233456678899999888876421 1100
Q ss_pred -------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCC-cc--HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 013323 110 -------DVAVYNYLISVCGKCKNSDQAIRIFEEMKKY-EVK-PN--GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 110 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~-p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 178 (445)
-..-|..++..+-+.+.++.+.++-..-.+. +-. ++ ...|..+.+++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 1123566677777777777777666554432 111 11 22577777778888888888777777765433
Q ss_pred CCHHHHHHHHHHHHccC
Q 013323 179 LDKFCYAGLITAHTNKI 195 (445)
Q Consensus 179 p~~~~~~~li~~~~~~~ 195 (445)
-......++...|..+
T Consensus 970 -r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp -CHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhCC
Confidence 2344555555555443
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.30 E-value=35 Score=23.76 Aligned_cols=84 Identities=13% Similarity=0.012 Sum_probs=46.3
Q ss_pred CcHhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 013323 55 RRFFLLRDVYDDMMLDGVQPTRDLFHSL--IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132 (445)
Q Consensus 55 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 132 (445)
...++|.-+-+.+...+. .-...+ ++.+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..
T Consensus 20 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 345666666666655432 222222 234556677777766665544 367766665543 35666666666
Q ss_pred HHHHHHhCCCCccHHHH
Q 013323 133 IFEEMKKYEVKPNGQTY 149 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y 149 (445)
.+.++..+|- |....|
T Consensus 90 rL~~la~sg~-p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSSD-PALADF 105 (115)
T ss_dssp HHHHHHTCSS-HHHHHH
T ss_pred HHHHHHhCCC-HHHHHH
Confidence 6666666552 343333
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.27 E-value=37 Score=23.69 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=43.5
Q ss_pred CcHhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 013323 55 RRFFLLRDVYDDMMLDGVQPTRDLFHSL--IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIR 132 (445)
Q Consensus 55 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 132 (445)
...++|.-+-+.+...+. .-...+ ++.+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..
T Consensus 21 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 345666666666655432 222222 234556677777766665554 367766666543 35566666666
Q ss_pred HHHHHHhCC
Q 013323 133 IFEEMKKYE 141 (445)
Q Consensus 133 ~~~~m~~~g 141 (445)
.+.++..+|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 666666655
No 256
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.96 E-value=7.4 Score=32.00 Aligned_cols=125 Identities=8% Similarity=-0.018 Sum_probs=68.9
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 013323 47 VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV--YNYLISVCG 122 (445)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~ 122 (445)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566788999999888888877776655332 122344455567665 4555556665543221 123445556
Q ss_pred ccCCHHHHHHHHHHHHhCCCCc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKP---NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
+.|+.+-+..+++.....++.+ |...++. +...++.|+. ++++.+.+.|..++
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~ 143 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQ----ETVQLLLERGADID 143 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCH----HHHHHHHHcCCCcc
Confidence 7788777666666543222222 2222233 3334455554 45566666676554
No 257
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.67 E-value=53 Score=24.96 Aligned_cols=66 Identities=0% Similarity=-0.012 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHCCCCCC
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKANGFLPD 110 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~ 110 (445)
.+.+|.-|...|+.++|.+.++++....+ -...+...+..++-+.+ ..+.+..++..+.+.|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35677778888888888888888742111 12233444555555532 24556667777776665443
No 258
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.30 E-value=8.4 Score=32.23 Aligned_cols=200 Identities=12% Similarity=-0.010 Sum_probs=97.4
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--ccCCCchHHHHHHHHHHHHhcCCcccccccc
Q 013323 153 LNACAAAGQLDPVYAIVRDMTAAGAGLDKFC-------YAGLITAHT--NKIPRADDTATKIIELVEQSKGWSSVETSGN 223 (445)
Q Consensus 153 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 223 (445)
+...++.|+.+.+..+++.+.+.|..++... .+.+..+.. +.|.. +.++.+++.-..........
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~--~~v~~Ll~~g~~~~~~~~~~---- 82 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRN--DTIPILLDIAEKTGNMREFI---- 82 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBC--THHHHHHHHHHHTTCHHHHH----
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCH--HHHHHHHHhcccccchHhhh----
Confidence 4455666888877777777777666555332 233444432 44544 55555555433221100000
Q ss_pred ccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHH---------
Q 013323 224 NAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYI--------- 294 (445)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------- 294 (445)
.......|..-++ .+...+..|+.+-+..++ +.|..++...
T Consensus 83 -------------------------~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~ 132 (260)
T 3jxi_A 83 -------------------------NSPFRDVYYRGQT-ALHIAIERRCKHYVELLV----EKGADVHAQARGRFFQPKD 132 (260)
T ss_dssp -------------------------TCCBCCSSEESBC-HHHHHHHTTCHHHHHHHH----HTTCCTTCCCEECCCSSSC
T ss_pred -------------------------cccccccccCCCC-HHHHHHHcCCHHHHHHHH----hCCCCcCccccccccCccc
Confidence 0000011112222 334445567776555444 4455554332
Q ss_pred -------HHHHHHHHHhcCChhhHHHHHHHHHh---CCCCC---CHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCC
Q 013323 295 -------VMQNIRCYLHSGDIDNGHKVFEDYIC---SEKFP---PAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRN 360 (445)
Q Consensus 295 -------~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p---~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~ 360 (445)
-.+.+...+..|+.+-+ +.+.+ .|..+ |..-.+.|..++..+....+. +...++++.+.+.|
T Consensus 133 ~~~~~~~g~tpL~~A~~~g~~~~v----~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g 208 (260)
T 3jxi_A 133 EGGYFYFGELPLSLAACTNQPHIV----HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208 (260)
T ss_dssp CCCSCCSCSSHHHHHHHTTCHHHH----HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHcCCHHHH----HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC
Confidence 12233344556775544 44455 45443 333444555433222323333 44456666666665
Q ss_pred CCC----------CcchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 361 IFL----------SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 361 ~~p----------~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
..+ |..-.+.+..++ +.|+.+-+..++++-..
T Consensus 209 a~~~~~~~~~~~~d~~g~tpL~~A~---~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 209 AKLFPDTNLEALLNNDGLSPLMMAA---KTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHCTTCCGGGCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred cccccccchhhcccCCCCCHHHHHH---HcCCHHHHHHHHHhCCC
Confidence 433 334445555555 68888877777766654
No 259
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=59.50 E-value=1.6e+02 Score=30.11 Aligned_cols=158 Identities=8% Similarity=-0.034 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCh---hhHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCcccccc
Q 013323 149 YVCLLNACAAAGQL---DPVYAIVRDMTAAG----AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221 (445)
Q Consensus 149 y~~li~~~~~~g~~---~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (445)
-..++...|+.|.. +.|.+.|+.....+ +.||... .+...-.+.|.. +....+++.....
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~--~~~~~l~~~~~~~--------- 755 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQ--DQWDFAWGQLQQA--------- 755 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCH--HHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCH--HHHHHHHHHHHcc---------
Confidence 34567777887764 56777887776532 5566432 222222334432 5566666666542
Q ss_pred ccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 013323 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDR-KSPDVYIVMQNIR 300 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~ 300 (445)
.+..--..++.+++...+.+...++++...... +++.. ... ++.
T Consensus 756 ---------------------------------~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~-~~~ 800 (909)
T 4fke_A 756 ---------------------------------QLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQD-ATS-TIN 800 (909)
T ss_dssp ---------------------------------CSHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHH-HHH
T ss_pred ---------------------------------CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHH-HHH
Confidence 222334568888888888888888888776543 44422 222 333
Q ss_pred HHHhcC-ChhhHHHHHHHHHhC---CCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHH
Q 013323 301 CYLHSG-DIDNGHKVFEDYICS---EKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLV 354 (445)
Q Consensus 301 ~~~~~g-~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~ 354 (445)
+...+. ..+.|++.+.+=-+. ....+...+..+|..+...+..... ++..++|+
T Consensus 801 ~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 801 SIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 333321 133444444331111 1223444667777755444544444 55555543
No 260
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.28 E-value=72 Score=27.63 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhc
Q 013323 149 YVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 213 (445)
Q Consensus 149 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~ 213 (445)
.+.++.-|...|+.++|...++++....+. ...+...+..++-+.++...+...+++..+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 567888899999999999999998643222 2344555555665543333455666666666543
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=59.07 E-value=51 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 013323 146 GQTYVCLLNACAAAGQLDPVYAIVRDMT 173 (445)
Q Consensus 146 ~~~y~~li~~~~~~g~~~~a~~~~~~m~ 173 (445)
.+.---+-.||...+++++|+.+++.+.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444447777888888888888877553
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.83 E-value=1.4e+02 Score=28.89 Aligned_cols=320 Identities=11% Similarity=0.052 Sum_probs=162.2
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANG-FLPDVAVYNYLISVC 121 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~ 121 (445)
.|.....+ .+.|+++.+..+...+...-+.| ...|..+..... ....+ ++-..+.+.. .+.....=+.-+..+
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 34444444 45688888887777664433322 235555554432 12333 4444444432 212223335566777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHH
Q 013323 122 GKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDT 201 (445)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 201 (445)
.+.+++...+.++.. .+.|...-.....+....|+..+|....+.+-..|- ........++..+.+.|....+.
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHH
Confidence 888888877765553 133555556677778888988888888888777663 34556778888888777766554
Q ss_pred HHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHH--------------HHHHHHH
Q 013323 202 ATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVY--------------HVAFHAC 267 (445)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~li~~~ 267 (445)
.+.=++.+-..+...... .+..... ................ +++.... ...+.-+
T Consensus 157 ~~~R~~~al~~~~~~~a~-------~l~~~l~-~~~~~~a~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVT-------VLAGQMP-ADYQTIASAIISLANN---PNTVLTFARTTGATDFTRQMAAVAFASV 225 (618)
T ss_dssp HHHHHHHHHHTTCHHHHH-------HHHHTCC-GGGHHHHHHHHHHHHC---GGGHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHH-------HHHHhCC-HHHHHHHHHHHHHHhC---hHhHHHHHhccCCChhhHHHHHHHHHHH
Confidence 444334333332211100 0000000 0000000000011110 1121111 1122223
Q ss_pred HhcccHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChh
Q 013323 268 AELKDVQAMETLLEMLKKDR-KSPDVY--IVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPK 344 (445)
Q Consensus 268 ~~~g~~~~a~~~~~~m~~~~-~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 344 (445)
.+ .+.+.|...+....+.. +.+... ....+.......+...++...+....... ++.....-.+.. + .+.
T Consensus 226 ar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~---A-lr~ 298 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRM---A-LGT 298 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHH---H-HHH
T ss_pred Hh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHH---H-HHC
Confidence 33 36788888888776432 322221 22222323334453556666666654432 344444444442 2 355
Q ss_pred hH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHH
Q 013323 345 GM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQA 395 (445)
Q Consensus 345 g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~ 395 (445)
|+ +.|...|+.|...... ...-.-.+-.+.. ..|+.++|..+|.+...
T Consensus 299 ~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~--~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKE-KDEWRYWQADLLL--ERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccc-cHhHHHHHHHHHH--HcCCHHHHHHHHHHHhc
Confidence 66 8899999888653321 1111222333334 78999999999988864
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.66 E-value=53 Score=30.07 Aligned_cols=99 Identities=14% Similarity=-0.063 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 013323 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNIRCYLHSGDIDNGHKVFEDYICS-EKFPPAELYATLVE 335 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 335 (445)
+...+-.-|.+.|+++.|.+.+.++...-..+ -...+-.+|..+...+++..+....+..... .-.++...-+.+-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567788999999999999999998753333 3457788899999999999999999987654 11223332222221
Q ss_pred hHhhcCChhhH-HHHHHHHHHHH
Q 013323 336 GAMFGYTPKGM-QLAQDTLVNMN 357 (445)
Q Consensus 336 ~~~~~~~~~g~-~~a~~~~~~m~ 357 (445)
+....+...+. ..|...|-+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 11112334444 66666665543
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.55 E-value=47 Score=28.07 Aligned_cols=51 Identities=10% Similarity=0.028 Sum_probs=24.1
Q ss_pred hcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 87 MKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
.+.|++++++.....-.+.. +-|...=..|+..+|-.|+++.|.+=++...
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455555555444444433 2344444445555555555555554444443
No 265
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.43 E-value=40 Score=22.14 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=44.5
Q ss_pred HHHHhCCCCCCcchhhHHHHHhhcccCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 354 VNMNSRNIFLSPRMGSDLLLVAAGEKSG-GYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 354 ~~m~~~~~~p~~~~~~~ll~~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
+.|.+.|+++++.- ..++.... ..+ ..-.+.++++.+.+.+...+..|....++.+.+.|..
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~--~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQ--EPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHT--SGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHH--hCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 44677787766544 33444443 443 5667889999998887778888888899988888865
No 266
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.34 E-value=12 Score=30.74 Aligned_cols=47 Identities=6% Similarity=-0.051 Sum_probs=25.2
Q ss_pred HHHHhcCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHH
Q 013323 83 IVGTMKGSRLQDTFFFRDQMKANGFLPDVAV--YNYLISVCGKCKNSDQ 129 (445)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~ 129 (445)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 61 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH
Confidence 3445566777777777776666654443211 1123444455666543
No 267
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=53.98 E-value=0.57 Score=43.39 Aligned_cols=234 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 013323 110 DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 189 (445)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 189 (445)
|+..|..+|.+..+.|.+++-.+++...++..-.|...| .++.+|++.+++.+..+.+. .|+..-...+=+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDt--eLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTH--HHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHH--HHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Q ss_pred HHHccCCCchHHHHHHHHHHHHhcCCcc-ccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHH
Q 013323 190 AHTNKIPRADDTATKIIELVEQSKGWSS-VETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268 (445)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 268 (445)
-|...|.. +.|+-+|..+.....+.. ......+......+.. ..++.||.-+-.+|.
T Consensus 153 rcf~e~lY--eAAKilys~isN~akLAstLV~L~~yq~AVdaArK--------------------Ans~ktWKeV~~ACv 210 (624)
T 3lvg_A 153 RCYDEKMY--DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK--------------------ANSTRTWKEVCFACV 210 (624)
T ss_dssp HHHHSCCS--TTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT--------------------CCSSCSHHHHTHHHH
T ss_pred HHHHccCH--HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh--------------------cCChhHHHHHHHHHh
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhHHH
Q 013323 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQL 348 (445)
Q Consensus 269 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~~~ 348 (445)
..+.+..|.-.--.+.-..-..+. ++.-|-..|.+++-+.+++.-... -+.-...|+-|-- .|++-..++
T Consensus 211 d~~EfrLAqicGLniIvhadeL~e-----lv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI----LYsKY~PeK 280 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVVHADELEE-----LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI----LYSKFKPQK 280 (624)
T ss_dssp HSCTTTTTTHHHHHHHCCSSCCSG-----GGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH----HHHSSCTTH
T ss_pred CchHHHHHHHhcchhcccHHHHHH-----HHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH----HHHhcCHHH
Q ss_pred HHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHH
Q 013323 349 AQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDL 392 (445)
Q Consensus 349 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~ 392 (445)
.++.++. -.+..-.-.+|++|. +..-|.++.-++..
T Consensus 281 lmEHlkl------f~sriNipKviracE--~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 281 MREHLEL------FWSRVNIPKVLRAAE--QAHLWAELVFLYDK 316 (624)
T ss_dssp HHHHHTT------SSSSSCCTTTHHHHT--TTTCHHHHHHHHHH
T ss_pred HHHHHHH------HHHhccHHHHHHHHH--HHhhHHHHHHHHhc
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=53.47 E-value=2e+02 Score=29.43 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHH
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMML 69 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 69 (445)
-|..++....+.++.+.+.++|+.+.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777777888888888888753
No 269
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=52.63 E-value=15 Score=27.99 Aligned_cols=18 Identities=0% Similarity=0.001 Sum_probs=10.7
Q ss_pred HHHHHhcCcHhHHHHHHH
Q 013323 48 VTSLTSQRRFFLLRDVYD 65 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~ 65 (445)
+...++.|+.+.+..+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 444466677766666554
No 270
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.65 E-value=68 Score=26.47 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=15.5
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHH
Q 013323 47 VVTSLTSQRRFFLLRDVYDDMML 69 (445)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~ 69 (445)
-|+.+....+|++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666777777777777776554
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=51.40 E-value=71 Score=23.61 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCC-Cc-chhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHH
Q 013323 347 QLAQDTLVNMNSRNIFL-SP-RMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLP 403 (445)
Q Consensus 347 ~~a~~~~~~m~~~~~~p-~~-~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 403 (445)
..+..++++..+.+ | .. ...-.+-.++ .|.|++++|.+..+.+.+ +.|+..
T Consensus 60 ~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~--yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 60 RLGVKILTDIYKEA--ESRRRECLYYLTIGC--YKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHC--GGGHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HHHHHHHHHHHhcC--cchhHHHHHHHHHHH--HHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 56666666666544 3 11 2222222333 377777777777776663 445443
No 272
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.30 E-value=69 Score=23.44 Aligned_cols=68 Identities=0% Similarity=-0.026 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHCCCCCCHH
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGS--RLQDTFFFRDQMKANGFLPDVA 112 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~ 112 (445)
.+.+|.-|...|+.++|.+.++++....+ -.......+..++-+.+ ..+.+.+++..+.+.|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35678888888888888888888742111 12234455555565543 2456777777777777544433
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.90 E-value=1.3e+02 Score=26.61 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCC
Q 013323 259 VYHVAFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD--IDNGHKVFEDYICSEKFP 325 (445)
Q Consensus 259 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 325 (445)
..+.+|.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+...|+-+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3567888888999999999999888532211 23345555555555433 355777777777776543
No 274
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=49.84 E-value=1.5e+02 Score=26.88 Aligned_cols=157 Identities=9% Similarity=-0.016 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCC---hhhHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccc
Q 013323 148 TYVCLLNACAAAGQ---LDPVYAIVRDMTAAG----AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVET 220 (445)
Q Consensus 148 ~y~~li~~~~~~g~---~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 220 (445)
.-..++...|..|+ .++|.+.|+.....+ ++||... .+...-.+. .+....+++.....
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~~----~~~~~~l~~~y~~s-------- 264 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQS----TEGWDFLYSKYQFS-------- 264 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTTS----HHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeCC----HHHHHHHHHHHhcC--------
Confidence 34566777778776 356777888776542 5555432 111111121 25556666665542
Q ss_pred cccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 013323 221 SGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDRK-SPDVYIVMQNI 299 (445)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li 299 (445)
.+..-=..++.+++...+.+...++++......+ ++.. ... ++
T Consensus 265 ----------------------------------~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD-~~~-~~ 308 (419)
T 3rjo_A 265 ----------------------------------LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQE-FPQ-IL 308 (419)
T ss_dssp ----------------------------------CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGG-HHH-HH
T ss_pred ----------------------------------CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhH-HHH-HH
Confidence 2333455688888888898888888888776543 4422 222 33
Q ss_pred HHHHhc-CChhhHHHHHH----HHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHH
Q 013323 300 RCYLHS-GDIDNGHKVFE----DYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVN 355 (445)
Q Consensus 300 ~~~~~~-g~~~~a~~~~~----~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~ 355 (445)
.+.+.+ --.+.|++.+. .+.+. ..++...+..+|.++...+..... ++..++|+.
T Consensus 309 ~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~~~~~~t~~~l~e~~~Ff~~ 369 (419)
T 3rjo_A 309 TLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSS 369 (419)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHT
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHHhhcCCCHHHHHHHHHHHHh
Confidence 344332 22344555543 23332 223456778888755444555555 666666654
No 275
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=49.65 E-value=76 Score=23.45 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 92 LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
..++..+++++.+.+-.-....+=-|--++.+.|++++|.++.+.+.+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334555555555433111233333344455555555555555555554
No 276
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=49.19 E-value=1.3e+02 Score=26.12 Aligned_cols=116 Identities=7% Similarity=-0.003 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-----CHHHHHHHHHhHhhcCChhhH-H
Q 013323 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP-----PAELYATLVEGAMFGYTPKGM-Q 347 (445)
Q Consensus 274 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~~~~~g~-~ 347 (445)
..|..+++.+.+ |.-.|..++..++.. ....++....+.|+.+-...+.- ....|..++.+++ .+.+... .
T Consensus 176 ~dA~~L~~A~~~-~~Gtde~~li~Il~~-Rs~~~L~~i~~~Y~~~~g~~Le~~I~~e~sGd~~~~Llalv-~~~~~~~~~ 252 (322)
T 2zhj_A 176 QDAQDLYEAGEK-RWGTDEVKFLSILCS-RNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIV-KCMRNKPAY 252 (322)
T ss_dssp HHHHHHHHHTTT-SSSCCHHHHHHHHHH-SCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHhhhc-CCCCchHHHhHhHHh-CCHHHHHHHHHHHHHHHCcCHHHHHHHhcCccHHHHHHHHH-HHhcCccHH
Confidence 356666666532 334566655555422 11223344444444433221110 1112333333222 2333333 6
Q ss_pred HHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCC
Q 013323 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARK 397 (445)
Q Consensus 348 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~ 397 (445)
.|..+++.|...| .|..++..++..- ..-+.......|+++-...
T Consensus 253 ~A~~L~~a~~g~G--tde~~lirilv~R---s~~dl~~i~~~Y~~~yg~~ 297 (322)
T 2zhj_A 253 FAERLYKSMKGLG--TDDSTLIRVMVSR---AEIDMLDIRANFKRLYGKS 297 (322)
T ss_dssp HHHHHHHHHSSSS--CCHHHHHHHHHHH---TTTTHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhccCC--CCHHHHHHHHHHc---CHHHHHHHHHHHHHHhCCc
Confidence 7888888887544 5666666666443 3456666666676665433
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.55 E-value=16 Score=29.67 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=51.6
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHc
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAV---YNYLISVCGK 123 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~ 123 (445)
...++.|+++.+..++ +.|..++... -...+...++.|+.+-+. .+.+.|..++... -.+.+...++
T Consensus 14 ~~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 14 VKATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred HHHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHH
Confidence 3446677765554444 4554443221 123445555667765444 4444443222111 1223444555
Q ss_pred cCCHHHHHHHHHHHHhCCCCccH---HHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC
Q 013323 124 CKNSDQAIRIFEEMKKYEVKPNG---QTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGL 179 (445)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 179 (445)
.|+.+-+. .+.+.|..++. ..+ +.+...+..|+.+ +++.+.+.|..+
T Consensus 86 ~~~~~~v~----~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~----~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 86 QGHLSMVV----QLMKYGADPSLIDGEGC-SCIHLAAQFGHTS----IVAYLIAKGQDV 135 (240)
T ss_dssp HTCHHHHH----HHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred cCCHHHHH----HHHHcCCCCcccCCCCC-CHHHHHHHcCHHH----HHHHHHhcCCCc
Confidence 66655443 33444544432 222 2334444555543 445555555544
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.64 E-value=19 Score=29.88 Aligned_cols=58 Identities=10% Similarity=0.007 Sum_probs=39.8
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHh--cCCChhHHHHHHHHHHH
Q 013323 47 VVTSLTSQRRFFLLRDVYDDMMLDGVQPTRD-------LFHSLIVGTM--KGSRLQDTFFFRDQMKA 104 (445)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~~ 104 (445)
.|...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence 3555678899998888888888877666633 2344554442 67888888877776543
No 279
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.43 E-value=1.6e+02 Score=25.86 Aligned_cols=66 Identities=6% Similarity=-0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-CChhHHHHHHHHHHHCCCCCC
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKG-SRLQDTFFFRDQMKANGFLPD 110 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~ 110 (445)
...+|.-|...|+.++|.+.++++...... .......+..++-+. ...+.+-.++..+.+.|+-+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 367888999999999999999888432111 122333344444332 234556677777777665443
No 280
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.30 E-value=96 Score=23.34 Aligned_cols=63 Identities=10% Similarity=-0.015 Sum_probs=42.9
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
+-+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 14 ~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344567788876653 345666666777788899999999888766777776666677766654
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.88 E-value=74 Score=26.26 Aligned_cols=90 Identities=7% Similarity=-0.031 Sum_probs=54.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 013323 82 LIVGTMKGSRLQDTFFFRDQMKAN--GFLP----DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNA 155 (445)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~ 155 (445)
-++.+....++++|.+++++..+. ++++ +.......++.-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466788889999999988877642 2322 112222333333333334445555555533 3455566677788
Q ss_pred HHHcCChhhHHHHHHHHHH
Q 013323 156 CAAAGQLDPVYAIVRDMTA 174 (445)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~ 174 (445)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8888888888888866543
No 282
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.49 E-value=96 Score=23.13 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=42.4
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 134 FEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 134 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
.+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345667787766543 44555566667778888899988887766677776666666666654
No 283
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.20 E-value=79 Score=23.63 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=43.4
Q ss_pred HHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 353 LVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 353 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
.+.+.+.|+++++.=. .++.... ..+..-.|.++++.+.+.+...+..|.-.-++.|.+.|..
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~--~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLV--NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHH--HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHH--hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456778877665432 2333333 4566677999999998887777888877777777777765
No 284
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=42.66 E-value=42 Score=27.66 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=31.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHc--cCCCchHHHHHHHHHHH
Q 013323 152 LLNACAAAGQLDPVYAIVRDMTAAGAGLDK-------FCYAGLITAHTN--KIPRADDTATKIIELVE 210 (445)
Q Consensus 152 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~--~~~~~~~~a~~~~~~~~ 210 (445)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.+..+... .|.. +.++.+++.-.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~--~~v~~Ll~~g~ 70 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN--ACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBC--TTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchH--HHHHHHHhcCC
Confidence 344556678888777777777777654433 333444444432 1444 55555555433
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.48 E-value=85 Score=23.83 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 130 AIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 130 a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
+..+|..|...|+-- -+..|...-..+-..|++.+|.++|+.=.+.+-+|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 667777777665543 345566666666777777777777777766666654
No 286
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.29 E-value=90 Score=23.32 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=40.8
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 133 IFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 133 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
+-+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 6 ~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3345667788776543 34455555556 77888999999888766677666666666666553
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.94 E-value=1.3e+02 Score=24.02 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc
Q 013323 90 SRLQDTFFFRDQMKANGFLP-DVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKP 144 (445)
Q Consensus 90 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 144 (445)
++..++.++|..|...||-- -...|-..-..+...|++.+|.++|+.-.+.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556666666666665432 24455555556666666666666666666665555
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.82 E-value=1e+02 Score=22.65 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=40.1
Q ss_pred HHHhCCCCccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 136 EMKKYEVKPNGQTYVCLLNACAAAG-QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 136 ~m~~~g~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.--.++.+...|-
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4666787766543 34555555555 677889999999888766677666666666666553
No 289
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.52 E-value=67 Score=23.69 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=41.1
Q ss_pred HHHhCCCCCCcchhhHHHHHhhcccCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 355 NMNSRNIFLSPRMGSDLLLVAAGEKSG-GYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 355 ~m~~~~~~p~~~~~~~ll~~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
.+.+.|+++++.=. .++.... ..+ ..-.|.++++.+.+.+...+..|.-.-++.|.+.|..
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~--~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLD--SAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHH--CC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHH--hCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 46677877665432 2333333 455 6778999999999887777888877777777776655
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.77 E-value=1e+02 Score=22.47 Aligned_cols=64 Identities=8% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCC--hhhHHHHHHHHHHcCCC
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ--LDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 178 (445)
.+.+|.-|...|+.++|.+-++++..... -...++..+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45677778888888888888888752111 122333444444444332 34566777777766654
No 291
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.94 E-value=67 Score=24.21 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=42.6
Q ss_pred HHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 352 TLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 352 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
+-+.+.+.|+++++.=. .++.... ..+..-.|.++++.+.+.+...+..|.-.-++.|.+.|..
T Consensus 14 ~~~~l~~~g~r~T~qR~-~IL~~l~--~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQRE-EVVSVLY--RSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCC--CHHHHH-HHHHHHH--HCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHH--hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34457778877655432 2333333 4566778999999998877777888877777778777765
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.92 E-value=32 Score=30.40 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHH
Q 013323 258 TVYHVAFHACAELKDVQAMETLLEM 282 (445)
Q Consensus 258 ~~~~~li~~~~~~g~~~~a~~~~~~ 282 (445)
.....++..+.+....+.+.++|..
T Consensus 142 ~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 142 SLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4455566666666666766666653
No 293
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.17 E-value=1.5e+02 Score=23.76 Aligned_cols=74 Identities=9% Similarity=-0.041 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 107 FLPDVAVYNYLISVCGK--CKNSDQAIRIFEEMKKYEVKP-NGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 107 ~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
..-|..-...-|...-. ++....+..+|..|...|+-- -+..|...-..+-..|++.+|.++|+.=.+.+-+|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33455443433332222 455779999999999887654 466788888999999999999999999988876663
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.05 E-value=88 Score=23.71 Aligned_cols=64 Identities=8% Similarity=0.153 Sum_probs=32.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCC--hhhHHHHHHHHHHcCCC
Q 013323 114 YNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQ--LDPVYAIVRDMTAAGAG 178 (445)
Q Consensus 114 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 178 (445)
.+.+|.-|...|+.++|.+.++++..... -...++..+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566667677777777777777652111 112233333334333222 23455666666655543
No 295
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=38.71 E-value=3.4e+02 Score=27.82 Aligned_cols=148 Identities=13% Similarity=0.006 Sum_probs=79.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCC
Q 013323 263 AFHACAELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYT 342 (445)
Q Consensus 263 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 342 (445)
+-.+|+..|+.....+++..+.... ..++.-...+--++...|+.+.+.++++.+.+.+ .|.+..-.++--++ .++
T Consensus 566 lglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGl--i~a 641 (963)
T 4ady_A 566 IALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGI--ACA 641 (963)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHH--HTS
T ss_pred HHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH--hcc
Confidence 4456778889888888888887542 2334434433345556788888888887776653 33333222222222 344
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhh----HHHHHHHHH---H-CCCCCCHHHHHHHHhhhhc
Q 013323 343 PKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTT----ANYIWDLMQ---A-RKITPSLPAVEAYYNGLKD 414 (445)
Q Consensus 343 ~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~----A~~~~~~m~---~-~~~~p~~~~~~~l~~~~~~ 414 (445)
.++...+.+++..+... +|..+-...+.+.+..-.|..+. ...+++++. . +.-.|+...-..+..|+..
T Consensus 642 Gn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 642 GKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 44557888888888752 23333333333344233443332 334444333 2 2333555555666666665
Q ss_pred cCC
Q 013323 415 REV 417 (445)
Q Consensus 415 ~~~ 417 (445)
.|.
T Consensus 719 aG~ 721 (963)
T 4ady_A 719 AGG 721 (963)
T ss_dssp TGG
T ss_pred cCC
Confidence 553
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.60 E-value=1.3e+02 Score=23.09 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCcc-HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 013323 130 AIRIFEEMKKYEVKPN-GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLD 180 (445)
Q Consensus 130 a~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 180 (445)
+.++|..|...|+--. +..|...-..+-..|++.+|.++|+.=.+.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3345555555443322 33344444444455555555555555555444443
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=38.21 E-value=35 Score=26.80 Aligned_cols=155 Identities=3% Similarity=-0.014 Sum_probs=84.0
Q ss_pred HHHHhcCcHhHHHHHHHHHHHCCCCCCHH-H-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHc
Q 013323 49 TSLTSQRRFFLLRDVYDDMMLDGVQPTRD-L-FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDV---AVYNYLISVCGK 123 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~ 123 (445)
...++.|+++....+++. ++. ... . -.+.+...+..|+.+.-.++.+.+.+.|..++. .-++.|.-++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~~----~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEK----GYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHHHHSCHHHHHHHHHH----SSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc----Ccc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 344677888876666543 322 222 1 224455556667777677788888888876654 233444443332
Q ss_pred -cCCHHHHHHHHHHHHhCCCCccHH---HHHHHHHHHHHcCCh-hhHHHHHHHHHH-cCCCCCHHHH--HHHHHHHHccC
Q 013323 124 -CKNSDQAIRIFEEMKKYEVKPNGQ---TYVCLLNACAAAGQL-DPVYAIVRDMTA-AGAGLDKFCY--AGLITAHTNKI 195 (445)
Q Consensus 124 -~g~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~g~~-~~a~~~~~~m~~-~g~~p~~~~~--~~li~~~~~~~ 195 (445)
..+.....++.+.+.+.|..++.. -.++.+...+..+.. ..-..+++.+.+ .|..++.... .+.+....+.|
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence 334555677788888888766532 231334444444433 345667777887 7766543221 12334444555
Q ss_pred CCchHHHHHHHHHHH
Q 013323 196 PRADDTATKIIELVE 210 (445)
Q Consensus 196 ~~~~~~a~~~~~~~~ 210 (445)
.. +..+-+.+.+.
T Consensus 166 ~~--~~v~~L~~~~~ 178 (186)
T 3t8k_A 166 KP--IALKMMEDYIK 178 (186)
T ss_dssp CH--HHHHHHHHHHH
T ss_pred CH--HHHHHHHHHHH
Confidence 43 44444444443
No 298
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=38.03 E-value=56 Score=29.12 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPT----RDLFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLI 118 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll 118 (445)
-.++|.-|...|++++|.+.++++.. |+ ...+..+..++-+.. ..+.+-.++..+...|+-+.......+.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~ 90 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFL 90 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 36889999999999999999999843 43 234445555554432 2345567777788777655555545444
Q ss_pred HHHHcc
Q 013323 119 SVCGKC 124 (445)
Q Consensus 119 ~~~~~~ 124 (445)
..+...
T Consensus 91 ~lle~l 96 (364)
T 3l6a_A 91 NVLDQC 96 (364)
T ss_dssp HHHHTH
T ss_pred HHHhhC
Confidence 444433
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.78 E-value=1.3e+02 Score=22.88 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 013323 275 AMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP 326 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 326 (445)
....+|..|..+|+-.. ...|..--..+-..|++.+|.++|..=++.+-+|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 37788888888877664 44677777778888999999999998888766663
No 300
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=37.62 E-value=1.3e+02 Score=22.58 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 92 LQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 92 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
..++..+++++.+.+-.-.....=-|--++.+.|++++|.++.+.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345555666655533111222333344455566666666666666555
No 301
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.56 E-value=91 Score=23.46 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=41.2
Q ss_pred HHHHhCCCCCCcchhhHHHHHhhcccCC-ChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 354 VNMNSRNIFLSPRMGSDLLLVAAGEKSG-GYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 354 ~~m~~~~~~p~~~~~~~ll~~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
+.|.+.|+++++.=. .++.... ..+ ..-.|.++++.+.+.+...+..|.-.-++.|.+.|..
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~--~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQ--QPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHT--SGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHH--hCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446777776655432 2333333 444 5667889999998877777888777777777777765
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=37.56 E-value=69 Score=25.03 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=10.9
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCC
Q 013323 156 CAAAGQLDPVYAIVRDMTAAGAGL 179 (445)
Q Consensus 156 ~~~~g~~~~a~~~~~~m~~~g~~p 179 (445)
.+..|+.+.-.++.+.+.+.|..+
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCC
Confidence 333444444444455555555443
No 303
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.47 E-value=1.2e+02 Score=22.85 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=40.3
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 134 FEEMKKYEVKPNGQTYVCLLNACAAAG-QLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 134 ~~~m~~~g~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
.+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 5 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 5 NQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344667777766543 34455555555 677788888888887766676666666666666654
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.54 E-value=8.8 Score=32.86 Aligned_cols=47 Identities=4% Similarity=0.072 Sum_probs=21.5
Q ss_pred HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 013323 84 VGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIF 134 (445)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 134 (445)
...+..|+.+.+..++ +.|..++..--.+.+...+..|+.+-+.-++
T Consensus 36 ~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 36 YYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3344466665544443 4443333222223445555666655444333
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.25 E-value=88 Score=20.33 Aligned_cols=58 Identities=7% Similarity=-0.045 Sum_probs=23.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 013323 67 MMLDGVQPTRDLFHSLIVGTMKGS-RLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK 125 (445)
Q Consensus 67 m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 125 (445)
|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|---.|+.+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444333 22333333332 33344455555544433333333333344444333
No 306
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.14 E-value=1.1e+02 Score=21.19 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH-----HhCCCCCCHHHHHHHH
Q 013323 275 AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDY-----ICSEKFPPAELYATLV 334 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~li 334 (445)
.+.++.+++..-|+.|+..+..-++..|...+- + +.++.++. ...|..|+..+.+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 456677777777999988888999988887774 2 33333322 2347777777666553
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.26 E-value=30 Score=27.98 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=14.5
Q ss_pred HHHHHHhcCcHhHHHHHHHHH
Q 013323 47 VVTSLTSQRRFFLLRDVYDDM 67 (445)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m 67 (445)
.+...++.|+++.+..+++.-
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred hHHHHHHhCCHHHHHHHHHhc
Confidence 356667788887777777653
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.87 E-value=1.5e+02 Score=22.60 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=43.6
Q ss_pred HHHHHHHH-HHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCC
Q 013323 128 DQAIRIFE-EMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA--GAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 128 ~~a~~~~~-~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~ 196 (445)
+.+.+-+. .+.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.---|+.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 33443333 345567776553 355666666777788888888888877 666676666666666666653
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.70 E-value=18 Score=32.02 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=50.4
Q ss_pred CChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 013323 39 NNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDL--FHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNY 116 (445)
Q Consensus 39 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 116 (445)
.|..-++.|. ..+..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.. +.+.|..++...-.+
T Consensus 16 ~d~~g~t~L~-~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIH-VAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTBC
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCCC
Confidence 4555555544 445677766555554 4565554322 1123344445666654444 444443333322223
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCcc
Q 013323 117 LISVCGKCKNSDQAIRIFEEMKKYEVKPN 145 (445)
Q Consensus 117 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 145 (445)
.+...+..|+.+-+..+++.-...|..|+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 44455667888877777776555454443
No 310
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.33 E-value=1.7e+02 Score=22.72 Aligned_cols=153 Identities=7% Similarity=-0.106 Sum_probs=95.9
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 013323 28 GAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107 (445)
Q Consensus 28 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 107 (445)
+...+.+.--.+|...-...+.++.+.+..+..-.+.+.+ + .+|...-...+.++.+.++.+....+. .+..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~--- 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLI-KALK--- 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---
Confidence 3444455555677777777888888877654444444433 3 256666666666777666654443333 3443
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 013323 108 LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGL 187 (445)
Q Consensus 108 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 187 (445)
.++..+-...+.++.+.++.+....+.+ +.. .+|..+-...+.++.+.++. ++...+..+.. .++..+-...
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A 158 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSA 158 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHH
Confidence 3777787888888888887654444444 433 46777777778888887764 34444444444 3577777788
Q ss_pred HHHHHccCC
Q 013323 188 ITAHTNKIP 196 (445)
Q Consensus 188 i~~~~~~~~ 196 (445)
+.++.+.+.
T Consensus 159 ~~aL~~~~~ 167 (201)
T 3ltj_A 159 ADALGEIGG 167 (201)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCc
Confidence 888877764
No 311
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.69 E-value=3e+02 Score=26.87 Aligned_cols=84 Identities=11% Similarity=-0.093 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCCCcchhhHHHHHhh
Q 013323 297 QNIRCYLHSGDIDNGHKVFEDYICSEKFPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPRMGSDLLLVAA 376 (445)
Q Consensus 297 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 376 (445)
....++.-.|++|.|.+.+-.. ...+.+++.+.+.-+ ++.+.+ ..++.. . .+ .| ..-+..+|..|.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~--gLL~~~----~~lls~-~-~~-~~-~lN~arLI~~Yt 364 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL--KLFKID----SSTRLT-K-KP-KR-DIRFANILANYT 364 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT--TC-------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc--CCccCC----Cccccc-C-CC-cc-cccHHHHHHHHH
Confidence 3556667799999999988754 356778887777632 222221 111100 0 01 12 344667776665
Q ss_pred -cccCCChhhHHHHHHHHH
Q 013323 377 -GEKSGGYTTANYIWDLMQ 394 (445)
Q Consensus 377 -~~~~g~~~~A~~~~~~m~ 394 (445)
..+..+..+|...|-.+.
T Consensus 365 ~~F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 365 KSFRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTTTTCHHHHHHHHHGGG
T ss_pred HHhhcCCHHHHHHHHHHHh
Confidence 346788888988887774
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.53 E-value=96 Score=23.15 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCCh
Q 013323 99 RDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQL 162 (445)
Q Consensus 99 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 162 (445)
-+.+.+.|+.++..= ..++..+...+ .-.|.++++.+.+.+...+..|.---|..+...|-+
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345566777766543 23344444455 567888888888776666666655555666665544
No 313
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.28 E-value=39 Score=27.89 Aligned_cols=58 Identities=10% Similarity=-0.078 Sum_probs=38.0
Q ss_pred HHHHHHhcCcHhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhc--CCChhHHHHHHHHHHH
Q 013323 47 VVTSLTSQRRFFLLRDVYDDMMLDGVQPTR-------DLFHSLIVGTMK--GSRLQDTFFFRDQMKA 104 (445)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~m~~ 104 (445)
.+...++.|+.+.+..+++.+.+.|..++. .-++.|..++.. .|+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 455667888988888888888777766553 334444444432 3788777777766554
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.53 E-value=1.7e+02 Score=22.49 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 013323 275 AMETLLEMLKKDRKSPD-VYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPPAE 328 (445)
Q Consensus 275 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 328 (445)
....+|..|..+|+-.. ...|..--..+-..|++.+|.++|..=++.+-+|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36678888888877664 4467777777788899999999999888887776544
No 315
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.39 E-value=1.3e+02 Score=20.77 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHcC
Q 013323 130 AIRIFEEMKKYEVKPNGQTYVCLLNACAAAG 160 (445)
Q Consensus 130 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g 160 (445)
|.++.+++..-|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444455555555555555554444
No 316
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.16 E-value=4.4e+02 Score=26.86 Aligned_cols=46 Identities=13% Similarity=-0.098 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 013323 90 SRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMK 138 (445)
Q Consensus 90 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 138 (445)
|+.++-..+++..... .+..--..++.+++...+.+...++++...
T Consensus 740 g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 740 GGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp SCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4444444444444442 122223344555544455444444444443
No 317
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.91 E-value=88 Score=25.99 Aligned_cols=86 Identities=10% Similarity=-0.040 Sum_probs=41.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHh---CCCCCC---HHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCC--------
Q 013323 299 IRCYLHSGDIDNGHKVFEDYIC---SEKFPP---AELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFL-------- 363 (445)
Q Consensus 299 i~~~~~~g~~~~a~~~~~~m~~---~~~~p~---~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p-------- 363 (445)
+...+..|+.+-+ +.+.+ .|..++ ..-.+.|..++..+....+. +...++++.+.+.|..+
T Consensus 152 L~~A~~~g~~~~v----~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~ 227 (273)
T 2pnn_A 152 LSLAACTNQLAIV----KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227 (273)
T ss_dssp HHHHHHTTCHHHH----HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGG
T ss_pred HHHHHHcCCHHHH----HHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccc
Confidence 3334556666544 44445 444333 23334444432212322333 44456666666655433
Q ss_pred --CcchhhHHHHHhhcccCCChhhHHHHHH
Q 013323 364 --SPRMGSDLLLVAAGEKSGGYTTANYIWD 391 (445)
Q Consensus 364 --~~~~~~~ll~~~~~~~~g~~~~A~~~~~ 391 (445)
|..-.+.+..+. +.|+.+-+..+++
T Consensus 228 ~~d~~g~TpL~~A~---~~g~~~iv~~Ll~ 254 (273)
T 2pnn_A 228 ITNRKGLTPLALAA---SSGKIGVLAYILQ 254 (273)
T ss_dssp CCCTTSCCHHHHHH---HTTCHHHHHHHHH
T ss_pred ccCCCCCCHHHHHH---HhChHHHHHHHHH
Confidence 333445555444 6788755544443
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.96 E-value=1.2e+02 Score=23.14 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=41.1
Q ss_pred HHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHC--CCCCCHHHHHHHHhhhhccCCC
Q 013323 354 VNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQAR--KITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 354 ~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
+.+.+.|+++++.= ..++.... ..+..-.|.++++.+.+. +...+..|.-.-++.|.+.|..
T Consensus 22 ~~L~~~g~r~T~qR-~~IL~~L~--~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 22 KILRQGGLKYTKQR-EVLLKTLY--HSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHTCCCCHHH-HHHHHHHH--SCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHH--hCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34566777765432 33444444 566777888999999877 6667777766677777776654
No 319
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=29.88 E-value=1.4e+02 Score=22.93 Aligned_cols=24 Identities=4% Similarity=0.104 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHH
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMM 68 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~ 68 (445)
..+|.-|...++.++|.+.++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 456777777788888888887775
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.76 E-value=1.4e+02 Score=21.72 Aligned_cols=47 Identities=2% Similarity=0.013 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 150 VCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 150 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566666677788899999999888767777777777777777664
No 321
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=28.28 E-value=2.9e+02 Score=23.89 Aligned_cols=274 Identities=7% Similarity=0.016 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHH-----HHHHHHHHHHcCChhhHHH
Q 013323 93 QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQT-----YVCLLNACAAAGQLDPVYA 167 (445)
Q Consensus 93 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-----y~~li~~~~~~g~~~~a~~ 167 (445)
..|..+.+-|...| .|..+...++... ...+.......|+.+-...+.-+... |..++.+++....-..|..
T Consensus 18 ~Da~~L~~A~kG~G--tde~~lieIL~~r-s~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA~~ 94 (320)
T 1yii_A 18 ADAEALRKAMKGMG--TDEETILKILTSR-NNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHA 94 (320)
T ss_dssp HHHHHHHHHHSSSS--CCHHHHHHHHHHS-CHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHh
Q 013323 168 IVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVH 247 (445)
Q Consensus 168 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (445)
+.+.| .|.-.|..++..++..-... ......+.|...-...-...+.
T Consensus 95 L~~A~--kg~Gtde~~lieIL~~Rs~~---ql~~I~~aY~~~y~~~Le~di~---------------------------- 141 (320)
T 1yii_A 95 LKHAI--KGAGTNEKVLTEILASRTPA---EVQNIKQVYMQEYEANLEDKIT---------------------------- 141 (320)
T ss_dssp HHHHH--SSSSCCHHHHHHHHHHSCHH---HHHHHHHHHHHHHSSCHHHHHH----------------------------
T ss_pred HHHHh--ccCCCchHHHhHHHhcCCHH---HHHHHHHHHHHhhCcCHHHHHH----------------------------
Q ss_pred hhcCcccCchhHHHHHHHHHHh-----------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 013323 248 RRGGFLSRLLTVYHVAFHACAE-----------LKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFE 316 (445)
Q Consensus 248 ~~~g~~~~~~~~~~~li~~~~~-----------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 316 (445)
....-.|..++-++.. .---..|..+++.+.. +.-.|..++..++.. ....++....+.|.
T Consensus 142 ------~e~sG~~~~~l~~l~~~~r~~~~~vd~~~a~~dA~~L~~A~~~-~~Gtde~~li~Il~t-Rs~~~L~~i~~~Y~ 213 (320)
T 1yii_A 142 ------GETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGEL-KWGTDEETFITILGT-RSVSHLRRVFDKYM 213 (320)
T ss_dssp ------HHCCHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHHHHHHT-TTCSSHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred ------hhcCCcHHHHHHHHHhhccCccccCCchHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHh-CCHHHHHHHHHHHH
Q ss_pred HHHhCCC-----CCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHH
Q 013323 317 DYICSEK-----FPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIW 390 (445)
Q Consensus 317 ~m~~~~~-----~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~ 390 (445)
.+-...+ .-....|..++.+++ .+.+... -.|..+.+.|...| .|..++..++-.. ..-+......-|
T Consensus 214 ~~~g~~L~~~I~~e~sGd~~~~Llalv-~~~~~~~~~~A~~L~~a~~g~G--td~~~Lirilv~R---se~dl~~Ik~~y 287 (320)
T 1yii_A 214 TISGFQIEETIDRETSGDLEKLLLAVV-KCIRSVPAYFAETLYYSMKGAG--TDDDTLIRVMVSR---SEIDLLDIRHEF 287 (320)
T ss_dssp HHHSSCHHHHHCCTTCCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHSSSS--CCHHHHHHHHHHH---TTTTHHHHHHHH
T ss_pred HHHCcCHHHHHhhhcCchHHHHHHHHH-HhccCCcHHHHHHHHHhhccCC--CcHHHHHHHHHhc---CHHHHHHHHHHH
Q ss_pred HHHHHCCCCCCHHH-----HHHHHhhhhccC
Q 013323 391 DLMQARKITPSLPA-----VEAYYNGLKDRE 416 (445)
Q Consensus 391 ~~m~~~~~~p~~~~-----~~~l~~~~~~~~ 416 (445)
+++-...+.-.... |..++-+++..+
T Consensus 288 ~~~yg~~L~~~I~~etsGdy~~~Llal~~~~ 318 (320)
T 1yii_A 288 RKNFAKSLYQMIQKDTSGDYRKALLLLCGGD 318 (320)
T ss_dssp HHHHSSCHHHHHHHHCCHHHHHHHHHHHC--
T ss_pred HHhcCCCHHHHHhhcCChHHHHHHHHHhCCC
No 322
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.07 E-value=3.1e+02 Score=24.04 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=48.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHH----hCC--CCccHHHHHHHHHHHHHcCChhhHHHHH
Q 013323 97 FFRDQMKANGFLPDVAVYNYLISVCGKCKNSD-QAIRIFEEMK----KYE--VKPNGQTYVCLLNACAAAGQLDPVYAIV 169 (445)
Q Consensus 97 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~----~~g--~~p~~~~y~~li~~~~~~g~~~~a~~~~ 169 (445)
-+.+-..+.++++|.....-|+..+.....-+ .=.++.+++. +.| -.-|......+-..|.+.+++.+|..-|
T Consensus 80 llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 80 LLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34455666777788877777777776655321 1122333332 111 2235555666667777777776666555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHH
Q 013323 170 RDMTAAGAGLDKFCYAGLITAH 191 (445)
Q Consensus 170 ~~m~~~g~~p~~~~~~~li~~~ 191 (445)
- .|-.++...|..++.-+
T Consensus 160 i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 160 V----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp T----TSCTTHHHHHHHHHHHH
T ss_pred H----hcCCchHHHHHHHHHHH
Confidence 2 23333334554444333
No 323
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.05 E-value=3.1e+02 Score=24.04 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhH----HHHHHHHHHcCCCCCHHHHHHHH
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPV----YAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~~~~~li 188 (445)
+|.++..=|.+.+++++|.+++..-- ..+.+.|+...+ .-+++.+.+.++++|.....-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455666777888888887754322 122333444333 33445566677888887777777
Q ss_pred HHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHH
Q 013323 189 TAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 268 (445)
Q Consensus 189 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~ 268 (445)
..+.......++. .++.+.+.+ |+. ...+...-|...-..+-..|.
T Consensus 102 ~L~~~~~~~~p~r-~~fi~~ai~---WS~------------------------------~~g~~~~Gdp~LH~~ig~~~~ 147 (336)
T 3lpz_A 102 GCLRLFQPGEPVR-KRFVKEMID---WSK------------------------------KFGDYPAGDPELHHVVGTLYV 147 (336)
T ss_dssp HHHTTSCTTCHHH-HHHHHHHHH---HHH------------------------------HHSSCTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHH-HHHHHHHHH---HHh------------------------------hcCCCCCCCHHHHHHHHHHHH
Confidence 7776654432221 222222221 110 000111334444556677788
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013323 269 ELKDVQAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGD 307 (445)
Q Consensus 269 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 307 (445)
+.+++.+|+.-|- .|-.+...+|..++..+...+.
T Consensus 148 ~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 148 EEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcC
Confidence 8899999887762 2444444677666655555443
No 324
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.89 E-value=2.8e+02 Score=24.04 Aligned_cols=129 Identities=9% Similarity=0.072 Sum_probs=76.5
Q ss_pred CcHhHHHHHHHHHHHC-----CCCCCHHHHHHH---HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 013323 55 RRFFLLRDVYDDMMLD-----GVQPTRDLFHSL---IVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKN 126 (445)
Q Consensus 55 ~~~~~a~~~~~~m~~~-----g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 126 (445)
-+-++|..+|..+... -..|+....... +..+.+..+ -++++.+.+.|+.|...++.=++..+++.=.
T Consensus 163 ~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 163 MSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp SCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 3556788888877643 233443332222 222222112 3678888899999999999999999988878
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHH----HHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 013323 127 SDQAIRIFEEMKKYEVKPNGQTYVCLLNAC----AAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITA 190 (445)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~y~~li~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 190 (445)
++.+.++|+.+...|...-....-+++..+ ....+.++....++.... ..+......++.-
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~ 303 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQ 303 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHH
Confidence 999999999998877542222222233222 223356666655554222 2344555666643
No 325
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.88 E-value=1.1e+02 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=31.7
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 379 KSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
..+..-.|.++++.+.+.+...+..|.-.-++.|.+.|..
T Consensus 25 ~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 25 EVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp TCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 5556677899999998888778888877788888887765
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.85 E-value=3.5e+02 Score=24.71 Aligned_cols=118 Identities=10% Similarity=-0.024 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CccHHHHHHHHHHHHH
Q 013323 91 RLQDTFFFRDQMKA--------NGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEV----KPNGQTYVCLLNACAA 158 (445)
Q Consensus 91 ~~~~a~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~y~~li~~~~~ 158 (445)
..++...+++...+ .++..+......++.. -.|+...++.+++....... .....+-..+-....+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 013323 159 A------------------------GQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVE 210 (445)
Q Consensus 159 ~------------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~ 210 (445)
. ++.+.|+..+..|.+.|..|....-..++.+.-.-|..++.........+.
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~ 319 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWD 319 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHH
No 327
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=27.35 E-value=2e+02 Score=21.58 Aligned_cols=76 Identities=13% Similarity=0.017 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHhHhhcCChhhHHHHHHHHHHHHhCCCCC-CcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCCCCCH
Q 013323 324 FPPAELYATLVEGAMFGYTPKGMQLAQDTLVNMNSRNIFL-SPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSL 402 (445)
Q Consensus 324 ~p~~~~~~~li~~~~~~~~~~g~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 402 (445)
.|+..+--.+--+++.+-.+....++..++++..+.+ | +..-+-+.+ +.++.|.|++++|.+..+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyL-Avg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYL-TIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHH-HHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHH-HHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 3455544444333432333333378888888887754 3 233333333 2334499999999999998885 45654
Q ss_pred HH
Q 013323 403 PA 404 (445)
Q Consensus 403 ~~ 404 (445)
.-
T Consensus 111 ~Q 112 (144)
T 1y8m_A 111 KQ 112 (144)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 328
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.76 E-value=5.8e+02 Score=26.53 Aligned_cols=58 Identities=5% Similarity=0.119 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCC
Q 013323 44 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGF 107 (445)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 107 (445)
|..|+.. .+.=+.+...++++++... + ..-..+++++...|..+...-+.+.+....+
T Consensus 313 f~~Lv~~-lR~~~~e~L~~l~~~~~~~---~--~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l 370 (1056)
T 1lsh_A 313 FLRLTAF-LRNVDAGVLQSIWHKLHQQ---K--DYRRWILDAVPAMATSEALLFLKRTLASEQL 370 (1056)
T ss_dssp HHHHHHH-HTTSCHHHHHHHHHHHTTS---H--HHHHHHHHHHHHHCSHHHHHHHHHHHHTTCS
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHhcc---H--HHHHHHHHHhHhcCCHHHHHHHHHHHHcCCC
Confidence 3333333 3444555566666665431 2 2223467777777776655555555554443
No 329
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.65 E-value=2.2e+02 Score=21.64 Aligned_cols=131 Identities=8% Similarity=0.094 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013323 41 ASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISV 120 (445)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 120 (445)
...++..+..++...... .++-+.+.+.|+.+ +.+..+++.+.+.|+.-|...-...+..
T Consensus 17 ~~a~~~Al~~Ls~r~~s~--~EL~~KL~~kg~~~------------------e~Ie~vl~~l~~~g~ldD~rfA~~~v~~ 76 (162)
T 3dfg_A 17 QTPVQRALGLLVHREHSK--KELNRKLQARGIEP------------------EAAQAAVERLAGEGWQDDVRFAASVVRN 76 (162)
T ss_dssp CCHHHHHHHHHHHSCCCH--HHHHHHHHHTTCCH------------------HHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchhhhH--HHHHHHHHhcCCCH------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356778888877765543 35666777777643 3456677777777776555555556666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 121 CGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
..+.|. ....+-.++...|+..+ +....+..+ .....+.|..+.+.-.......+.....-++..+.+.|-
T Consensus 77 ~~~~~~--G~~~I~~eL~~KGI~~~--~I~~al~~~-~~de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF 147 (162)
T 3dfg_A 77 RASSGY--GPLHIRAELGTHGLDSD--AVSAAMATF-EGDWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGF 147 (162)
T ss_dssp HHTTTC--CHHHHHHHHHHTTCCHH--HHHHHHTTC-CSCHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTC
T ss_pred HHHccc--cHHHHHHHHHHcCCCHH--HHHHHHHhC-cHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 555332 33567778888887433 233333322 111122344443321111112344555666666666653
No 330
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.55 E-value=43 Score=20.65 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=11.0
Q ss_pred HHHHHHHHHHh-CCCCccHHHHHHHHHHH
Q 013323 129 QAIRIFEEMKK-YEVKPNGQTYVCLLNAC 156 (445)
Q Consensus 129 ~a~~~~~~m~~-~g~~p~~~~y~~li~~~ 156 (445)
+|++.|.+|.. .+| ++..||.-.|...
T Consensus 4 Eae~aF~~lL~~~~V-~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQV-DSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTC-CSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCCCcHHHHHHHh
Confidence 44444444433 233 2333444444444
No 331
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.54 E-value=2e+02 Score=25.51 Aligned_cols=24 Identities=4% Similarity=0.115 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHH
Q 013323 80 HSLIVGTMKGSRLQDTFFFRDQMK 103 (445)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~m~ 103 (445)
..+|.=|...++.++|.+.++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 334444444445555555554443
No 332
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.15 E-value=2.4e+02 Score=21.81 Aligned_cols=80 Identities=13% Similarity=-0.012 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 013323 109 PDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 188 (445)
Q Consensus 109 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 188 (445)
++..+-...+.++++.++.+....+.+ +.. .++...-...+.++.+.++.+. ...+..+.. .++..+-...+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 455555555666666665433333333 332 3566666666666666665433 223333332 34555555666
Q ss_pred HHHHccCC
Q 013323 189 TAHTNKIP 196 (445)
Q Consensus 189 ~~~~~~~~ 196 (445)
.++.+.+.
T Consensus 129 ~aL~~~~~ 136 (201)
T 3ltj_A 129 FALGEIGD 136 (201)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhCC
Confidence 66655543
No 333
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.72 E-value=2.8e+02 Score=23.93 Aligned_cols=64 Identities=2% Similarity=0.033 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHCCCCC
Q 013323 45 NTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSR--LQDTFFFRDQMKANGFLP 109 (445)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~p 109 (445)
+.+|.-|...|+.++|.+.++++....+. .......+..+.-+.++ .+...+++..+.+.|+-+
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 45667777777777777777776421111 12233444444444322 344556666666555433
No 334
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.49 E-value=2.7e+02 Score=22.22 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=9.3
Q ss_pred CcHhHHHHHHHHHHHCC
Q 013323 55 RRFFLLRDVYDDMMLDG 71 (445)
Q Consensus 55 ~~~~~a~~~~~~m~~~g 71 (445)
.+.+.|+-.+-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.34 E-value=1.2e+02 Score=22.08 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=30.7
Q ss_pred cCCChhhHHHHHHHHHHCCCCCCHHHHHHHHhhhhccCCC
Q 013323 379 KSGGYTTANYIWDLMQARKITPSLPAVEAYYNGLKDREVP 418 (445)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (445)
..+..-.|.++++.+.+.+...+..|.-..++.+.+.|..
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4455667889999998887777888877778777777765
No 336
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.30 E-value=2.5e+02 Score=21.85 Aligned_cols=143 Identities=7% Similarity=-0.142 Sum_probs=80.1
Q ss_pred CCChhhHHHHHHHHHhcCcHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 013323 38 ANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYL 117 (445)
Q Consensus 38 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 117 (445)
.++...=...+..+.+.+..+..-.+.+ +.+. +|...-...+.++.+.++.+.. ..+..+.. .+|..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIK-ALKD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHH-HHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHH
Confidence 5666666666667776666433333333 3332 4655555566666666654333 33333333 2666676777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 118 ISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 118 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
+.++.+.++.+.... +..+.. .++..+-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 102 AVALGQIGDERAVEP-LIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHHHHHH-HHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 777777777543333 333433 366666667777777776643 3444444443 3566666677777766653
No 337
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.18 E-value=4e+02 Score=24.02 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=13.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 013323 113 VYNYLISVCGKCKNSDQAIRIFEEMKK 139 (445)
Q Consensus 113 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 139 (445)
--+.++.+++...+.+...++++....
T Consensus 269 ek~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 269 EKSQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 344455555555555555555544443
No 338
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.12 E-value=66 Score=25.08 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=7.6
Q ss_pred HhcCcHhHHHHHHH
Q 013323 52 TSQRRFFLLRDVYD 65 (445)
Q Consensus 52 ~~~~~~~~a~~~~~ 65 (445)
+..|+.+.+..++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 45566555555543
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.01 E-value=2.4e+02 Score=21.54 Aligned_cols=61 Identities=7% Similarity=-0.025 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChhhHHHHHHHHHhC
Q 013323 260 YHVAFHACAELKDVQAMETLLEMLKKDRKSP--DVYIVMQNIR-C-----YLHSGDIDNGHKVFEDYICS 321 (445)
Q Consensus 260 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~~ 321 (445)
|...+..|-. |++-+|.++++..-...-.+ ....|-.||. . ..+.|+...|..++.+....
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4444444444 99999999999988765555 5567777777 2 23579999999999987664
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.84 E-value=1.3e+02 Score=22.30 Aligned_cols=58 Identities=3% Similarity=-0.024 Sum_probs=36.7
Q ss_pred HhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 138 KKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 138 ~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
.+.|++++. .=..++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 6 r~~g~r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 6 PPVKGRATR-QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp ----CHHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344554433 2345566666666778889999999888766777776666666666654
No 341
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=23.64 E-value=3.6e+02 Score=23.40 Aligned_cols=273 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCccHHH-----HHHHHHHHHHcCChhhH
Q 013323 93 QDTFFFRDQMKANGFLPDVAVYNYLISVCGKCK--NSDQAIRIFEEMKKYEVKPNGQT-----YVCLLNACAAAGQLDPV 165 (445)
Q Consensus 93 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~-----y~~li~~~~~~g~~~~a 165 (445)
..|..+.+.|...| .|..+ ||..++... +.....+.|+.+-...+.-+... |..++-++...---.+|
T Consensus 25 ~DA~~L~kA~kG~G--tdE~~---lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~DA 99 (327)
T 1w3w_A 25 PDAETLYKAMKGIG--TNEQA---IIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYEA 99 (327)
T ss_dssp HHHHHHHHHHSSSS--CCHHH---HHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHHH
T ss_pred HHHHHHHHHhcCCC--CCHHH---HHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHHH
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCccccccccccchhhcccchhhhcchhhhhH
Q 013323 166 YAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEY 245 (445)
Q Consensus 166 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (445)
..+++.|. |.-.|..++..++..-... ......+.|...-...-...+.
T Consensus 100 ~~L~~A~~--g~Gtde~~lieIL~tRs~~---ql~~i~~~Y~~~yg~sLe~dI~-------------------------- 148 (327)
T 1w3w_A 100 KELHDAMK--GLGTKEGVIIEILASRTKN---QLREIMKAYEEDYGSSLEEDIQ-------------------------- 148 (327)
T ss_dssp HHHHHHHH--SSSCCHHHHHHHHHHSCHH---HHHHHHHHHHHHHSSCHHHHHH--------------------------
T ss_pred HHHHHHhh--ccCCCHHHHHHHHHhCCHH---HHHHHHHHHHHHhCccHHHHHh--------------------------
Q ss_pred HhhhcCcccCchhHHHHHHHHHHhcccHH------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 013323 246 VHRRGGFLSRLLTVYHVAFHACAELKDVQ------------AMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHK 313 (445)
Q Consensus 246 ~~~~~g~~~~~~~~~~~li~~~~~~g~~~------------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 313 (445)
....-.|..++.+..+..+.+ .|..+++.+.. +.-.|..++..++.. ....++....+
T Consensus 149 --------~e~sG~~~~~L~~lv~~~r~~~~~~vd~~~a~~DA~~L~~A~~~-~~GTde~~lirIl~t-Rs~~~L~~i~~ 218 (327)
T 1w3w_A 149 --------ADTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEK-IRGTDEMKFITILCT-RSATHLLRVFE 218 (327)
T ss_dssp --------HHCCHHHHHHHHHHHSCCCCCCCSCCCHHHHHHHHHHHHHHHHC-SSSCCHHHHHHHHHH-SCHHHHHHHHH
T ss_pred --------hccCchHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHHHhhC-cCCCcHhHhhHHHhc-CCHHHHHHHHH
Q ss_pred HHHHHHhCCCCCCHHH-----HHHHHHhHhhcCChhhH-HHHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHH
Q 013323 314 VFEDYICSEKFPPAEL-----YATLVEGAMFGYTPKGM-QLAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTAN 387 (445)
Q Consensus 314 ~~~~m~~~~~~p~~~~-----~~~li~~~~~~~~~~g~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~ 387 (445)
.|..+-...+.-.... |..++.+++ .+..+.. --|..+.+.|. |...|..+...++-..+ .-+.....
T Consensus 219 ~Y~~~~g~~L~~~I~~e~sGd~~~~Llalv-~~~~~~~~~fA~~L~~amk--g~GTdd~~LiriivsR~---e~dl~~Ik 292 (327)
T 1w3w_A 219 EYEKIANKSIEDSIKSETHGSLEEAMLTVV-KCTQNLHSYFAERLYYAMK--GAGTRDGTLIRNIVSRS---EIDLNLIK 292 (327)
T ss_dssp HHHHHHSSCHHHHHHHHCCHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHS--SSSCCHHHHHHHHHHHT---TTTHHHHH
T ss_pred HHHHHHCCCHHHHHhhhcCCcHHHHHHHHH-HHcCCHHHHHHHHHHhhcc--CCCCChhHeeeeeeECC---HHHHHHHH
Q ss_pred HHHHHHHHCCCCCCHHH-----HHHHHhhhhccCCC
Q 013323 388 YIWDLMQARKITPSLPA-----VEAYYNGLKDREVP 418 (445)
Q Consensus 388 ~~~~~m~~~~~~p~~~~-----~~~l~~~~~~~~~~ 418 (445)
..|+++-...+.-.... |..++-+++..+ |
T Consensus 293 ~~y~~~yg~sL~~~I~~~tsGdy~~~LlaL~~~~-~ 327 (327)
T 1w3w_A 293 CHFKKMYGKTLSSMIMEDTSGDYKNALLSLVGSD-P 327 (327)
T ss_dssp HHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHCCC-C
T ss_pred HHHHHHhCCcHHHHHhhhCChHHHHHHHHHhCCC-C
No 342
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.28 E-value=70 Score=21.27 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=13.1
Q ss_pred hhHHHHHHHHH-HCCCCCCHHHHHHHHhhhh
Q 013323 384 TTANYIWDLMQ-ARKITPSLPAVEAYYNGLK 413 (445)
Q Consensus 384 ~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~ 413 (445)
++|...|.+|+ +.+|.|+. ||...+..++
T Consensus 17 eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~ 46 (82)
T 2dod_A 17 EARMKQFKDMLLERGVSAFS-TWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHTTCCSSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 44555555555 34444432 4444444333
No 343
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.04 E-value=2.2e+02 Score=23.24 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 013323 276 METLLEMLKKDRKSP-DVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFP 325 (445)
Q Consensus 276 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 325 (445)
...+|..|..+|+-- -...|...-..+-..|++.+|.++|..=++.+-+|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.79 E-value=2.6e+02 Score=21.39 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=7.9
Q ss_pred CcHhHHHHHHHHHHHC
Q 013323 55 RRFFLLRDVYDDMMLD 70 (445)
Q Consensus 55 ~~~~~a~~~~~~m~~~ 70 (445)
|++-+|.++|+..-..
T Consensus 46 g~yfeaHEvLEe~W~~ 61 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYN 61 (161)
T ss_dssp TCHHHHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHh
Confidence 4555555555554443
No 345
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.76 E-value=64 Score=25.15 Aligned_cols=14 Identities=7% Similarity=0.321 Sum_probs=7.0
Q ss_pred HccCCHHHHHHHHH
Q 013323 122 GKCKNSDQAIRIFE 135 (445)
Q Consensus 122 ~~~g~~~~a~~~~~ 135 (445)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44555555554443
No 346
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=21.88 E-value=3.9e+02 Score=23.13 Aligned_cols=117 Identities=7% Similarity=-0.024 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-----HHHHHHHHHhHhhcCChhhH-H
Q 013323 274 QAMETLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSEKFPP-----AELYATLVEGAMFGYTPKGM-Q 347 (445)
Q Consensus 274 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~g~-~ 347 (445)
..|..+++.+.. +...|..++..++.. ....++....+.|..+-...+.-+ ...|..++.+++ .+.+... .
T Consensus 177 ~DA~~L~~A~~~-~~Gtde~~li~Il~t-Rs~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~~Ll~lv-~~~r~~~~~ 253 (323)
T 1axn_A 177 QDAQILYKAGEN-RWGTDEDKFTEILCL-RSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIV-NCVRNTPAF 253 (323)
T ss_dssp HHHHHHHHHTTT-SSSCCHHHHHHHHHH-SCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCCCCHHHHHHHHHh-CCHHHHHHHHHHHHHHHCcCHHHHHhHhcCchHHHHHHHHH-HhcCCccHH
Confidence 466677776642 334566655554422 112334444555554433221100 112333333222 1333333 5
Q ss_pred HHHHHHHHHHhCCCCCCcchhhHHHHHhhcccCCChhhHHHHHHHHHHCCC
Q 013323 348 LAQDTLVNMNSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKI 398 (445)
Q Consensus 348 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~g~~~~A~~~~~~m~~~~~ 398 (445)
.|..+++.|. |...|..++..++..- ..-++......|+++-...+
T Consensus 254 ~A~~L~~A~~--g~GTde~~lirilv~R---s~~~L~~i~~~Y~~~yg~~L 299 (323)
T 1axn_A 254 LAERLHRALK--GIGTDEFTLNRIMVSR---SEIDLLDIRTEFKKHYGYSL 299 (323)
T ss_dssp HHHHHHHHHS--SSSCCHHHHHHHHHHH---TTTTHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhcc--cCCCCHHHhhhhhhhC---CHHHHHHHHHHHHHHcCCcH
Confidence 6888888885 4456777777776543 34566667777776654433
No 347
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.75 E-value=2.9e+02 Score=21.53 Aligned_cols=111 Identities=10% Similarity=-0.091 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 013323 74 PTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLL 153 (445)
Q Consensus 74 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~y~~li 153 (445)
||...-...+..+.+.++.+....+. .+.. .+|..+-...+.++.+.++.+....+.+ +.. .+|..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHH
Confidence 44444444455555555433222222 3333 2455555566666666665433333333 322 35555556666
Q ss_pred HHHHHcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 013323 154 NACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIP 196 (445)
Q Consensus 154 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 196 (445)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 6666666543 2333333332 2455555555666555543
No 348
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.17 E-value=2.3e+02 Score=20.28 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 013323 132 RIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAA 175 (445)
Q Consensus 132 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 175 (445)
-+|+.+.+..+.|+...--.-|..+...++++.|.++...+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34555666666666555555566667777888888887777653
No 349
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=21.15 E-value=1.3e+02 Score=22.79 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=10.7
Q ss_pred HHHHhcCcHhHHHHHHHH
Q 013323 49 TSLTSQRRFFLLRDVYDD 66 (445)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~ 66 (445)
...++.|+.+.+..+++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~ 27 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDN 27 (179)
T ss_dssp HHHHHHTCHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 344566777666666553
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.00 E-value=1.8e+02 Score=25.33 Aligned_cols=113 Identities=10% Similarity=0.070 Sum_probs=55.1
Q ss_pred HHHHHhcc--cHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhhHHHHHHHHHhC-CC---CCCHHHHHHHH
Q 013323 264 FHACAELK--DVQAMETLLEMLKKDRKSPDVY---IVMQNIRCYLHSGDIDNGHKVFEDYICS-EK---FPPAELYATLV 334 (445)
Q Consensus 264 i~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~---~p~~~~~~~li 334 (445)
+...+..| +.+-+..+++. |..++.. -.+. +...+..|+.+-+..+++.-... +. ..|..-.+.|.
T Consensus 142 L~~A~~~g~~~~~~v~~Ll~~----ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~ 216 (364)
T 3ljn_A 142 LHWCVGLGPEYLEMIKILVQL----GASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH 216 (364)
T ss_dssp HHHHHHSCGGGHHHHHHHHHH----TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH
T ss_pred HHHHHHcCCchHHHHHHHHHc----CCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH
Confidence 33344556 66655555543 4444322 2333 33345667776655555432210 11 11223334444
Q ss_pred HhHhhcCChhhHHHHHHHHHHHHhCCCCCCcc---hhhHHHHHhhcccCCChhhHHHHHHH
Q 013323 335 EGAMFGYTPKGMQLAQDTLVNMNSRNIFLSPR---MGSDLLLVAAGEKSGGYTTANYIWDL 392 (445)
Q Consensus 335 ~~~~~~~~~~g~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~g~~~~A~~~~~~ 392 (445)
.+ +..|.. ++++.+.+.|..++.. -.+.+..++ +.|..+-+..+++.
T Consensus 217 ~A-----~~~g~~---~~v~~Ll~~gad~~~~d~~g~tpL~~A~---~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 217 WA-----ILINWE---DVAMRFVEMGIDVNMEDNEHTVPLYLSV---RAAMVLLTKELLQK 266 (364)
T ss_dssp HH-----HTTTCH---HHHHHHHTTTCCTTCCCTTSCCHHHHHH---HTCCHHHHHHHHHH
T ss_pred HH-----HHcCCH---HHHHHHHHcCCCCCCCCCCCCCHHHHHH---HhChHHHHHHHHHc
Confidence 42 233442 3444456677665543 334555554 68888777777665
No 351
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.99 E-value=2.8e+02 Score=24.10 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 013323 278 TLLEMLKKDRKSPDVYIVMQNIRCYLHSGDIDNGHKVFEDYICSE 322 (445)
Q Consensus 278 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 322 (445)
++++.+.+.|+.|..+++.-++..+++.=.++.+.++|+.+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 355566667888888887777777777777888888888877765
No 352
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=20.89 E-value=2.9e+02 Score=21.27 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhcCcHhHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHhcCCChhHHHHHHHHHHHC--CC-----
Q 013323 43 EYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTR-------DLFHSLIVGTMKGSRLQDTFFFRDQMKAN--GF----- 107 (445)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~----- 107 (445)
.+-.-+..+...+.++.|.-+.+.+... +..|+. .++..+-+++...+++..|...|++..+. .+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3344578888999999988887775542 123432 24556667888999999999999985321 01
Q ss_pred -----------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 013323 108 -----------------LPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKY 140 (445)
Q Consensus 108 -----------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 140 (445)
.++...-=-+-.+|.+.+++++|+.+++.+..+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 011122223667889999999999998877543
No 353
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.41 E-value=1.2e+02 Score=26.06 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=60.6
Q ss_pred HHHHHhcCcHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH
Q 013323 48 VTSLTSQRRFFLLRDVYDDMMLDGVQPTRD---LFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVA--VYNYLISVCG 122 (445)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~ 122 (445)
|...++.|+.+-+..+++ +.|..|+.. ..+.+..++.. +.......+.+.+.+.|..++.. .-.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 444567788766555543 245444322 22233332221 22233344555667777655432 1123445566
Q ss_pred ccCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCHHH
Q 013323 123 KCKNSDQAIRIFEEMKKYEVKPN---GQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFC 183 (445)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 183 (445)
+.|..+.+..+++. .|..++ ..-++.|. ..++.|+.+ +.+.+.+.|..++..+
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTDCGD 303 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHTTSCSSTTCC
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCC
Confidence 77887766554432 233332 22233333 344556643 5566677787776544
No 354
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=20.18 E-value=7.2e+02 Score=25.55 Aligned_cols=157 Identities=8% Similarity=0.021 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcCC---hhhHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCCchHHHHHHHHHHHHhcCCcccccc
Q 013323 149 YVCLLNACAAAGQ---LDPVYAIVRDMTAAG----AGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETS 221 (445)
Q Consensus 149 y~~li~~~~~~g~---~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (445)
-..++...|+.|. .++|.+.|++....+ ++||.. ..+...-.+ . .+....+++.....
T Consensus 751 R~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr--~~Vyc~~~~--~--~~~~~~l~~~y~~s--------- 815 (967)
T 3se6_A 751 RSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVL--KIVYSVGAQ--T--TAGWNYLLEQYELS--------- 815 (967)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHH--HHHHHHHTT--S--HHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhh--hHhHhhhhc--c--HHHHHHHHHHHhcc---------
Confidence 3456777778776 467888888877643 334432 222221111 1 25556666665542
Q ss_pred ccccchhhcccchhhhcchhhhhHHhhhcCcccCchhHHHHHHHHHHhcccHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 013323 222 GNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACAELKDVQAMETLLEMLKKDR-KSPDVYIVMQNIR 300 (445)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~ 300 (445)
.+..-=..++.+++...+.+...++++...... +++ ..... ++.
T Consensus 816 ---------------------------------~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~~i~~-qd~~~-~~~ 860 (967)
T 3se6_A 816 ---------------------------------MSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKT-QNLAA-LLH 860 (967)
T ss_dssp ---------------------------------SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCG-GGHHH-HHH
T ss_pred ---------------------------------CCHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCcCcH-hHHHH-HHH
Confidence 233334578899999999999999998877543 343 22222 334
Q ss_pred HHHhcC-ChhhHHHHHH----HHHhCCCCCCHHHHHHHHHhHhhcCChhhH-HHHHHHHHHH
Q 013323 301 CYLHSG-DIDNGHKVFE----DYICSEKFPPAELYATLVEGAMFGYTPKGM-QLAQDTLVNM 356 (445)
Q Consensus 301 ~~~~~g-~~~~a~~~~~----~m~~~~~~p~~~~~~~li~~~~~~~~~~g~-~~a~~~~~~m 356 (445)
+.+.+. -.+.|++.+. .+.+. ..++...+..+|.++...+..... ++..++|+.-
T Consensus 861 ~v~~n~~g~~~~w~f~~~nw~~i~~~-~~~~~~~~~~~i~~~~~~~~t~~~l~~~~~f~~~~ 921 (967)
T 3se6_A 861 AIARRPKGQQLAWDFVRENWTHLLKK-FDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESL 921 (967)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHTTTTTCCSHHHHHHHHHHHHHS
T ss_pred HHHcChhHHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Confidence 444332 2344555443 33332 334556788888755444555555 6666666543
No 355
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=20.00 E-value=4.8e+02 Score=23.41 Aligned_cols=94 Identities=7% Similarity=0.012 Sum_probs=59.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHH
Q 013323 262 VAFHACAELKDVQAMETLLEMLKKD--RKSPD---VYIVMQNIRCYLHSGDIDNGHKVFEDYICS--EKFPPAELYATLV 334 (445)
Q Consensus 262 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li 334 (445)
-+...|...|++.+|..++..+.+. ..... ..+|-.-+..|...+++.++...+...... .+.|++..-..+-
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4778889999999998888887653 22111 235666788889999999999999887654 3434554444443
Q ss_pred HhHhhcCC-hhhH-HHHHHHHHH
Q 013323 335 EGAMFGYT-PKGM-QLAQDTLVN 355 (445)
Q Consensus 335 ~~~~~~~~-~~g~-~~a~~~~~~ 355 (445)
.+.-..+. ..++ ..|...|-+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHH
Confidence 32111233 3444 555555444
Done!