Query 013325
Match_columns 445
No_of_seqs 318 out of 1252
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1364 Predicted ubiquitin re 100.0 2.9E-43 6.3E-48 339.3 17.9 345 8-445 4-356 (356)
2 KOG1363 Predicted regulator of 100.0 4.6E-32 1E-36 277.7 10.2 285 149-444 147-459 (460)
3 cd02991 UAS_ETEA UAS family, E 99.9 5.8E-26 1.3E-30 193.7 14.5 114 164-278 1-116 (116)
4 smart00594 UAS UAS domain. 99.9 1.1E-25 2.3E-30 194.3 12.5 116 156-272 2-122 (122)
5 cd02958 UAS UAS family; UAS is 99.9 9.8E-25 2.1E-29 185.9 13.7 113 164-277 1-113 (114)
6 cd02990 UAS_FAF1 UAS family, F 99.9 7.9E-24 1.7E-28 183.8 13.8 114 164-278 1-136 (136)
7 KOG2507 Ubiquitin regulatory p 99.9 1.7E-23 3.8E-28 205.6 15.2 110 163-275 2-111 (506)
8 cd01770 p47_UBX p47-like ubiqu 99.9 3.8E-21 8.3E-26 152.5 10.3 77 366-445 3-79 (79)
9 cd01774 Faf1_like2_UBX Faf1 ik 99.8 1.3E-19 2.9E-24 145.6 10.0 79 365-445 2-84 (85)
10 cd01773 Faf1_like1_UBX Faf1 ik 99.8 1.5E-19 3.3E-24 142.9 10.0 76 365-443 3-78 (82)
11 cd01767 UBX UBX (ubiquitin reg 99.8 1.5E-19 3.2E-24 143.2 10.0 75 367-445 2-77 (77)
12 cd01771 Faf1_UBX Faf1 UBX doma 99.8 3.2E-19 6.9E-24 141.7 10.0 76 365-443 2-78 (80)
13 smart00166 UBX Domain present 99.7 7.5E-18 1.6E-22 134.4 9.8 77 366-444 3-80 (80)
14 PF00789 UBX: UBX domain; Int 99.7 7.2E-18 1.6E-22 135.2 8.8 79 364-444 3-82 (82)
15 cd01772 SAKS1_UBX SAKS1-like U 99.7 1.4E-17 2.9E-22 132.5 9.5 76 365-443 2-77 (79)
16 PF13899 Thioredoxin_7: Thiore 99.5 1.9E-13 4.1E-18 109.4 9.7 80 166-249 3-82 (82)
17 cd02960 AGR Anterior Gradient 99.4 1.2E-12 2.7E-17 113.1 7.3 92 165-261 8-99 (130)
18 cd02955 SSP411 TRX domain, SSP 99.3 1.4E-11 3.1E-16 106.3 12.0 90 170-261 5-100 (124)
19 KOG2086 Protein tyrosine phosp 99.3 1.4E-12 3.1E-17 129.0 6.6 78 365-445 303-380 (380)
20 PF14555 UBA_4: UBA-like domai 99.3 1.3E-12 2.9E-17 91.3 4.5 42 11-53 1-42 (43)
21 cd02951 SoxW SoxW family; SoxW 99.3 3E-11 6.6E-16 104.2 12.6 108 169-277 2-121 (125)
22 KOG2689 Predicted ubiquitin re 99.3 8.2E-12 1.8E-16 117.8 8.4 78 365-444 208-286 (290)
23 cd02953 DsbDgamma DsbD gamma f 99.2 1.8E-10 3.9E-15 96.0 10.1 100 171-271 2-103 (104)
24 PF03190 Thioredox_DsbH: Prote 99.1 6.9E-10 1.5E-14 99.4 9.1 107 165-276 22-142 (163)
25 COG2143 Thioredoxin-related pr 99.0 4.2E-09 9.2E-14 92.0 10.3 105 168-274 30-148 (182)
26 PF13098 Thioredoxin_2: Thiore 99.0 6.5E-10 1.4E-14 93.6 4.9 94 176-271 1-112 (112)
27 cd02959 ERp19 Endoplasmic reti 98.8 7.3E-09 1.6E-13 88.6 6.8 103 168-276 7-114 (117)
28 PRK00293 dipZ thiol:disulfide 98.8 2.6E-08 5.7E-13 107.2 11.3 105 167-274 461-569 (571)
29 cd02950 TxlA TRX-like protein 98.7 3.4E-07 7.3E-12 81.1 12.2 101 174-279 14-114 (142)
30 cd02956 ybbN ybbN protein fami 98.4 5.5E-06 1.2E-10 67.5 11.2 93 169-271 3-95 (96)
31 KOG0910 Thioredoxin-like prote 98.4 3.6E-06 7.9E-11 74.0 10.5 105 161-276 42-149 (150)
32 cd02997 PDI_a_PDIR PDIa family 98.3 6.1E-06 1.3E-10 68.0 10.5 90 175-270 12-103 (104)
33 cd02949 TRX_NTR TRX domain, no 98.3 1.2E-05 2.5E-10 66.0 11.8 95 168-271 2-96 (97)
34 cd02985 TRX_CDSP32 TRX family, 98.3 9.5E-06 2.1E-10 67.5 11.0 93 168-272 5-100 (103)
35 PRK10996 thioredoxin 2; Provis 98.3 1.3E-05 2.7E-10 70.7 12.4 92 175-274 47-138 (139)
36 PF00085 Thioredoxin: Thioredo 98.3 1.2E-05 2.7E-10 65.7 11.0 96 167-273 7-102 (103)
37 COG4232 Thiol:disulfide interc 98.2 6.7E-06 1.5E-10 86.5 9.8 102 170-274 462-567 (569)
38 cd02948 TRX_NDPK TRX domain, T 98.2 3.7E-05 8E-10 63.8 11.8 88 176-273 13-101 (102)
39 cd02963 TRX_DnaJ TRX domain, D 98.1 3.2E-05 6.9E-10 65.3 11.3 100 165-272 7-109 (111)
40 cd02993 PDI_a_APS_reductase PD 98.1 2.3E-05 4.9E-10 65.9 9.9 95 168-269 10-107 (109)
41 COG1331 Highly conserved prote 98.1 1.2E-05 2.5E-10 86.0 9.6 105 170-276 33-151 (667)
42 PHA02278 thioredoxin-like prot 98.1 5.9E-05 1.3E-09 63.0 11.1 83 178-269 12-99 (103)
43 cd02984 TRX_PICOT TRX domain, 98.0 4E-05 8.6E-10 62.4 9.8 93 168-271 4-96 (97)
44 TIGR01068 thioredoxin thioredo 98.0 0.00011 2.3E-09 59.7 12.0 90 177-274 11-100 (101)
45 cd03002 PDI_a_MPD1_like PDI fa 98.0 4.2E-05 9.1E-10 63.7 9.7 99 166-271 7-108 (109)
46 cd03006 PDI_a_EFP1_N PDIa fami 98.0 7.4E-05 1.6E-09 63.5 10.5 96 165-269 15-111 (113)
47 TIGR00385 dsbE periplasmic pro 97.9 6.3E-05 1.4E-09 68.6 10.1 92 177-276 60-172 (173)
48 PLN00410 U5 snRNP protein, DIM 97.9 0.00011 2.3E-09 64.9 10.9 98 168-277 13-122 (142)
49 TIGR01126 pdi_dom protein disu 97.9 0.00012 2.6E-09 59.8 10.1 94 168-273 5-100 (102)
50 cd02947 TRX_family TRX family; 97.9 0.00014 3.1E-09 57.3 10.1 86 175-271 5-92 (93)
51 KOG0907 Thioredoxin [Posttrans 97.9 0.00015 3.2E-09 60.9 10.4 85 167-262 8-94 (106)
52 cd03000 PDI_a_TMX3 PDIa family 97.9 0.00012 2.5E-09 60.9 9.5 96 168-273 4-102 (104)
53 cd02961 PDI_a_family Protein D 97.9 0.00013 2.8E-09 58.8 9.6 91 172-269 7-99 (101)
54 PRK09381 trxA thioredoxin; Pro 97.9 0.00024 5.3E-09 59.3 11.5 89 178-274 19-107 (109)
55 cd03004 PDI_a_ERdj5_C PDIa fam 97.8 0.00022 4.8E-09 58.9 10.8 93 167-269 9-102 (104)
56 cd03003 PDI_a_ERdj5_N PDIa fam 97.8 0.00021 4.5E-09 58.9 9.9 90 168-269 10-99 (101)
57 cd02996 PDI_a_ERp44 PDIa famil 97.8 0.00023 4.9E-09 59.5 10.1 92 167-270 9-107 (108)
58 cd02954 DIM1 Dim1 family; Dim1 97.8 0.0002 4.3E-09 60.9 9.7 85 179-274 13-110 (114)
59 cd02999 PDI_a_ERp44_like PDIa 97.7 0.00016 3.4E-09 59.9 8.2 84 177-269 15-98 (100)
60 cd03011 TlpA_like_ScsD_MtbDsbE 97.7 0.00011 2.4E-09 62.5 7.5 94 173-271 13-122 (123)
61 PRK15412 thiol:disulfide inter 97.7 0.00026 5.5E-09 65.4 10.1 91 179-277 67-178 (185)
62 PTZ00051 thioredoxin; Provisio 97.7 0.00055 1.2E-08 55.8 10.6 84 171-266 9-94 (98)
63 TIGR02740 TraF-like TraF-like 97.7 0.00055 1.2E-08 67.2 12.3 94 176-276 162-265 (271)
64 cd02986 DLP Dim1 family, Dim1- 97.7 0.00047 1E-08 58.4 10.0 96 167-275 3-111 (114)
65 cd02995 PDI_a_PDI_a'_C PDIa fa 97.6 0.00039 8.4E-09 57.0 8.9 86 177-270 15-103 (104)
66 cd03065 PDI_b_Calsequestrin_N 97.6 0.0011 2.4E-08 56.8 11.8 96 167-275 17-119 (120)
67 TIGR02738 TrbB type-F conjugat 97.6 0.00047 1E-08 61.8 9.8 91 177-274 47-152 (153)
68 cd03005 PDI_a_ERp46 PDIa famil 97.6 0.00084 1.8E-08 54.9 10.6 89 168-269 9-100 (102)
69 cd02994 PDI_a_TMX PDIa family, 97.6 0.00077 1.7E-08 55.3 10.2 92 166-272 8-100 (101)
70 cd02998 PDI_a_ERp38 PDIa famil 97.5 0.00053 1.1E-08 56.2 8.4 88 176-269 14-103 (105)
71 cd02957 Phd_like Phosducin (Ph 97.5 0.00059 1.3E-08 57.6 8.5 70 180-261 24-95 (113)
72 PTZ00443 Thioredoxin domain-co 97.5 0.001 2.2E-08 63.3 10.9 104 165-276 36-140 (224)
73 cd03001 PDI_a_P5 PDIa family, 97.5 0.0016 3.5E-08 53.3 10.7 86 178-270 16-101 (103)
74 PRK03147 thiol-disulfide oxido 97.4 0.0011 2.3E-08 60.0 10.2 88 178-273 59-170 (173)
75 TIGR01295 PedC_BrcD bacterioci 97.4 0.0022 4.8E-08 55.2 11.5 93 168-270 12-119 (122)
76 cd02975 PfPDO_like_N Pyrococcu 97.4 0.0018 4E-08 54.8 10.7 94 174-276 16-111 (113)
77 cd02989 Phd_like_TxnDC9 Phosdu 97.4 0.0015 3.2E-08 55.4 10.0 77 174-261 16-94 (113)
78 cd02965 HyaE HyaE family; HyaE 97.3 0.0042 9.2E-08 52.5 11.9 101 151-268 4-109 (111)
79 cd03010 TlpA_like_DsbE TlpA-li 97.3 0.00078 1.7E-08 57.7 7.6 83 176-266 21-125 (127)
80 cd02966 TlpA_like_family TlpA- 97.3 0.0011 2.3E-08 54.5 7.5 79 174-260 13-116 (116)
81 cd03009 TryX_like_TryX_NRX Try 97.2 0.0018 4E-08 55.8 8.8 72 178-257 16-115 (131)
82 cd02987 Phd_like_Phd Phosducin 97.2 0.0035 7.6E-08 57.4 11.0 70 180-261 83-154 (175)
83 TIGR00424 APS_reduc 5'-adenyly 97.1 0.0028 6.2E-08 66.4 10.8 114 153-272 344-460 (463)
84 cd02982 PDI_b'_family Protein 97.1 0.0028 6.1E-08 52.0 8.5 89 180-274 12-102 (103)
85 TIGR01130 ER_PDI_fam protein d 97.1 0.0034 7.4E-08 65.5 10.7 92 177-276 15-110 (462)
86 TIGR02739 TraF type-F conjugat 97.0 0.0067 1.4E-07 58.8 11.5 93 179-278 149-251 (256)
87 cd02962 TMX2 TMX2 family; comp 97.0 0.0059 1.3E-07 54.6 10.0 80 168-260 37-126 (152)
88 PF03943 TAP_C: TAP C-terminal 97.0 0.0006 1.3E-08 49.3 2.9 41 12-53 2-42 (51)
89 smart00804 TAP_C C-terminal do 97.0 0.0014 3.1E-08 49.4 5.0 45 5-51 8-52 (63)
90 PRK14018 trifunctional thiored 97.0 0.0042 9.1E-08 66.1 10.4 86 179-272 55-170 (521)
91 PTZ00102 disulphide isomerase; 97.0 0.0033 7.1E-08 66.3 9.7 97 167-276 40-139 (477)
92 cd02992 PDI_a_QSOX PDIa family 96.9 0.007 1.5E-07 51.3 9.2 77 167-250 9-88 (114)
93 PRK13703 conjugal pilus assemb 96.9 0.0072 1.6E-07 58.3 10.2 92 180-278 143-244 (248)
94 cd02964 TryX_like_family Trypa 96.9 0.0056 1.2E-07 53.0 8.5 79 171-257 8-115 (132)
95 PLN02309 5'-adenylylsulfate re 96.9 0.0084 1.8E-07 62.9 11.1 91 177-273 362-455 (457)
96 cd02952 TRP14_like Human TRX-r 96.8 0.008 1.7E-07 51.5 8.9 63 179-248 20-98 (119)
97 cd03008 TryX_like_RdCVF Trypar 96.8 0.0042 9.1E-08 55.2 7.3 72 178-257 23-128 (146)
98 PF13728 TraF: F plasmid trans 96.7 0.013 2.9E-07 55.4 10.7 86 179-271 119-214 (215)
99 PTZ00062 glutaredoxin; Provisi 96.6 0.021 4.4E-07 53.7 10.9 87 169-275 6-94 (204)
100 PRK13728 conjugal transfer pro 96.6 0.016 3.5E-07 53.2 10.0 86 184-277 73-173 (181)
101 cd01806 Nedd8 Nebb8-like ubiq 96.6 0.013 2.8E-07 45.4 8.2 69 369-444 2-71 (76)
102 PTZ00102 disulphide isomerase; 96.6 0.0083 1.8E-07 63.2 9.0 102 166-277 364-467 (477)
103 cd00194 UBA Ubiquitin Associat 96.6 0.0052 1.1E-07 41.3 4.8 36 12-49 3-38 (38)
104 PF00627 UBA: UBA/TS-N domain; 96.6 0.0043 9.3E-08 41.6 4.3 34 11-46 3-36 (37)
105 PLN02919 haloacid dehalogenase 96.5 0.012 2.6E-07 68.3 10.6 92 179-278 419-539 (1057)
106 PF13905 Thioredoxin_8: Thiore 96.5 0.014 3E-07 47.2 8.1 69 180-253 1-94 (95)
107 cd01791 Ubl5 UBL5 ubiquitin-li 96.5 0.024 5.1E-07 44.2 8.9 70 368-444 2-72 (73)
108 smart00165 UBA Ubiquitin assoc 96.5 0.0056 1.2E-07 40.9 4.5 35 12-48 3-37 (37)
109 PTZ00056 glutathione peroxidas 96.5 0.024 5.2E-07 53.0 10.3 90 178-276 37-179 (199)
110 cd03012 TlpA_like_DipZ_like Tl 96.5 0.016 3.5E-07 49.6 8.4 80 174-261 17-125 (126)
111 cd01792 ISG15_repeat1 ISG15 ub 96.4 0.022 4.7E-07 45.1 8.5 72 368-444 3-75 (80)
112 KOG0908 Thioredoxin-like prote 96.4 0.017 3.7E-07 55.0 9.0 90 176-277 17-108 (288)
113 cd02988 Phd_like_VIAF Phosduci 96.4 0.037 8.1E-07 51.5 11.1 68 180-261 102-171 (192)
114 PF11543 UN_NPL4: Nuclear pore 96.4 0.0073 1.6E-07 48.0 5.2 73 367-442 4-77 (80)
115 TIGR02187 GlrX_arch Glutaredox 96.3 0.026 5.7E-07 53.3 9.6 89 179-276 19-112 (215)
116 TIGR02661 MauD methylamine deh 96.3 0.033 7.3E-07 51.5 10.0 88 178-277 72-180 (189)
117 cd01809 Scythe_N Ubiquitin-lik 96.3 0.023 4.9E-07 43.6 7.4 70 368-444 1-71 (72)
118 COG3118 Thioredoxin domain-con 96.2 0.024 5.3E-07 55.5 9.0 98 167-276 31-131 (304)
119 cd02969 PRX_like1 Peroxiredoxi 96.2 0.05 1.1E-06 49.2 10.6 96 179-279 24-156 (171)
120 cd01807 GDX_N ubiquitin-like d 96.2 0.029 6.3E-07 43.6 7.6 69 369-444 2-71 (74)
121 cd03017 PRX_BCP Peroxiredoxin 96.1 0.047 1E-06 47.2 9.5 88 179-270 22-138 (140)
122 PHA02125 thioredoxin-like prot 96.1 0.029 6.2E-07 43.7 7.1 71 184-271 2-73 (75)
123 cd02967 mauD Methylamine utili 96.0 0.051 1.1E-06 45.3 8.9 72 179-255 20-109 (114)
124 PRK11509 hydrogenase-1 operon 95.9 0.059 1.3E-06 47.0 9.1 59 216-278 69-127 (132)
125 PTZ00044 ubiquitin; Provisiona 95.9 0.046 1E-06 42.5 7.6 69 369-444 2-71 (76)
126 cd03007 PDI_a_ERp29_N PDIa fam 95.9 0.067 1.4E-06 45.6 9.0 92 167-272 9-113 (116)
127 cd01794 DC_UbP_C dendritic cel 95.8 0.036 7.8E-07 42.8 6.6 66 370-442 1-67 (70)
128 TIGR00411 redox_disulf_1 small 95.8 0.1 2.2E-06 40.6 9.4 75 185-274 4-81 (82)
129 cd01763 Sumo Small ubiquitin-r 95.8 0.11 2.4E-06 41.7 9.6 72 364-442 8-80 (87)
130 PLN02399 phospholipid hydroper 95.7 0.099 2.1E-06 50.2 10.8 35 241-276 201-235 (236)
131 PF08534 Redoxin: Redoxin; In 95.6 0.078 1.7E-06 46.3 8.8 78 178-263 26-136 (146)
132 cd01803 Ubiquitin Ubiquitin. U 95.5 0.073 1.6E-06 41.1 7.6 69 369-444 2-71 (76)
133 TIGR01130 ER_PDI_fam protein d 95.5 0.056 1.2E-06 56.4 9.1 97 166-274 353-453 (462)
134 cd01804 midnolin_N Ubiquitin-l 95.5 0.091 2E-06 41.4 8.0 68 368-443 2-70 (78)
135 KOG2244 Highly conserved prote 95.3 0.023 5.1E-07 59.3 5.1 81 169-250 101-187 (786)
136 PLN02412 probable glutathione 95.3 0.086 1.9E-06 47.7 8.4 90 179-276 28-165 (167)
137 cd01798 parkin_N amino-termina 95.2 0.083 1.8E-06 40.5 6.9 67 370-443 1-68 (70)
138 cd01814 NTGP5 Ubiquitin-like N 95.2 0.051 1.1E-06 45.6 5.9 64 366-435 3-73 (113)
139 PF13881 Rad60-SLD_2: Ubiquiti 95.2 0.11 2.3E-06 44.0 7.9 64 367-436 2-72 (111)
140 cd01805 RAD23_N Ubiquitin-like 95.1 0.14 3E-06 39.9 7.9 67 369-442 2-71 (77)
141 cd00340 GSH_Peroxidase Glutath 95.0 0.14 3.1E-06 45.3 8.8 84 176-268 18-149 (152)
142 cd01812 BAG1_N Ubiquitin-like 95.0 0.14 3E-06 39.1 7.5 68 368-443 1-69 (71)
143 cd01810 ISG15_repeat2 ISG15 ub 95.0 0.12 2.5E-06 40.2 7.1 68 370-444 1-69 (74)
144 TIGR01626 ytfJ_HI0045 conserve 94.8 0.29 6.2E-06 45.2 10.3 83 179-269 58-174 (184)
145 PRK00522 tpx lipid hydroperoxi 94.7 0.3 6.4E-06 44.2 10.0 85 179-271 43-165 (167)
146 PRK10382 alkyl hydroperoxide r 94.7 0.43 9.3E-06 44.2 11.2 91 179-273 30-154 (187)
147 PRK09437 bcp thioredoxin-depen 94.6 0.34 7.4E-06 42.8 10.1 24 242-266 121-144 (154)
148 TIGR02540 gpx7 putative glutat 94.4 0.44 9.5E-06 42.2 10.4 34 240-274 115-152 (153)
149 KOG2501 Thioredoxin, nucleored 94.4 0.18 3.9E-06 45.0 7.6 75 176-255 29-129 (157)
150 cd01796 DDI1_N DNA damage indu 94.3 0.16 3.5E-06 39.1 6.4 67 370-442 1-69 (71)
151 cd01808 hPLIC_N Ubiquitin-like 94.3 0.23 5E-06 38.1 7.2 69 368-444 1-70 (71)
152 PF00578 AhpC-TSA: AhpC/TSA fa 94.3 0.19 4.1E-06 42.2 7.4 70 179-256 24-123 (124)
153 cd01802 AN1_N ubiquitin-like d 94.3 0.32 6.9E-06 40.6 8.5 72 366-444 26-98 (103)
154 PF00240 ubiquitin: Ubiquitin 94.3 0.19 4.1E-06 38.1 6.6 63 373-442 1-64 (69)
155 TIGR00412 redox_disulf_2 small 94.2 0.24 5.1E-06 38.6 7.2 69 185-271 3-75 (76)
156 TIGR02187 GlrX_arch Glutaredox 94.2 0.39 8.5E-06 45.2 10.1 83 177-273 129-214 (215)
157 cd03015 PRX_Typ2cys Peroxiredo 94.1 0.39 8.5E-06 43.5 9.6 94 176-273 25-155 (173)
158 TIGR03137 AhpC peroxiredoxin. 93.9 0.35 7.6E-06 44.6 8.9 90 179-272 30-153 (187)
159 PRK15000 peroxidase; Provision 93.8 0.41 8.9E-06 44.7 9.3 91 179-273 33-160 (200)
160 PF11976 Rad60-SLD: Ubiquitin- 93.3 0.42 9.1E-06 36.6 7.0 67 368-441 1-69 (72)
161 PF02845 CUE: CUE domain; Int 92.9 0.22 4.7E-06 34.3 4.4 38 12-49 3-40 (42)
162 PF14836 Ubiquitin_3: Ubiquiti 92.8 0.38 8.2E-06 38.8 6.3 63 379-443 15-78 (88)
163 KOG4351 Uncharacterized conser 92.5 0.02 4.2E-07 53.7 -1.7 49 4-52 17-67 (244)
164 cd01769 UBL Ubiquitin-like dom 92.3 0.86 1.9E-05 34.0 7.5 66 372-444 2-68 (69)
165 cd03026 AhpF_NTD_C TRX-GRX-lik 92.3 1.3 2.9E-05 35.7 8.9 82 175-269 6-88 (89)
166 smart00546 CUE Domain that may 92.1 0.43 9.4E-06 32.9 5.1 38 13-50 5-42 (43)
167 PRK13190 putative peroxiredoxi 92.1 1.1 2.4E-05 41.8 9.6 93 178-274 25-153 (202)
168 KOG0190 Protein disulfide isom 92.1 0.48 1E-05 50.0 7.6 97 166-274 32-131 (493)
169 PTZ00256 glutathione peroxidas 92.1 1.3 2.7E-05 40.7 9.7 38 238-276 142-182 (183)
170 smart00213 UBQ Ubiquitin homol 92.0 0.62 1.3E-05 34.2 6.3 62 369-438 2-63 (64)
171 KOG0912 Thiol-disulfide isomer 91.9 0.38 8.3E-06 47.3 6.2 93 179-275 12-106 (375)
172 KOG0191 Thioredoxin/protein di 91.7 0.98 2.1E-05 46.5 9.5 94 175-276 42-135 (383)
173 cd01797 NIRF_N amino-terminal 91.6 1.2 2.5E-05 35.1 7.7 69 369-444 2-73 (78)
174 PTZ00253 tryparedoxin peroxida 91.3 1.4 3.1E-05 40.9 9.3 90 179-272 35-161 (199)
175 KOG2086 Protein tyrosine phosp 91.2 0.07 1.5E-06 53.9 0.4 41 10-51 4-44 (380)
176 cd03014 PRX_Atyp2cys Peroxired 91.1 1.1 2.4E-05 38.8 7.9 74 179-260 25-128 (143)
177 cd02971 PRX_family Peroxiredox 90.9 1.9 4.1E-05 37.0 9.2 80 179-262 21-130 (140)
178 TIGR00601 rad23 UV excision re 90.9 0.82 1.8E-05 47.0 7.8 68 369-442 2-72 (378)
179 PTZ00137 2-Cys peroxiredoxin; 89.8 3.7 7.9E-05 40.1 10.9 91 179-273 97-223 (261)
180 PRK06369 nac nascent polypepti 89.6 0.65 1.4E-05 39.3 4.8 33 13-46 79-111 (115)
181 PF13848 Thioredoxin_6: Thiore 89.3 2.1 4.6E-05 38.4 8.5 90 177-272 91-183 (184)
182 TIGR00264 alpha-NAC-related pr 89.0 0.57 1.2E-05 39.6 4.0 31 14-45 82-112 (116)
183 cd01793 Fubi Fubi ubiquitin-li 88.9 2.9 6.3E-05 32.2 7.8 67 369-444 2-69 (74)
184 PRK10606 btuE putative glutath 88.7 4.1 8.8E-05 37.6 9.9 68 175-252 20-101 (183)
185 PRK13191 putative peroxiredoxi 88.5 5 0.00011 37.9 10.7 91 179-273 32-159 (215)
186 cd00196 UBQ Ubiquitin-like pro 87.6 2.6 5.7E-05 29.3 6.5 64 372-442 2-66 (69)
187 cd02970 PRX_like2 Peroxiredoxi 87.4 5.2 0.00011 34.4 9.5 60 180-249 24-88 (149)
188 cd02968 SCO SCO (an acronym fo 87.3 1.9 4.2E-05 37.0 6.6 19 179-197 21-40 (142)
189 PRK13189 peroxiredoxin; Provis 86.9 4.1 8.9E-05 38.7 9.1 91 179-273 34-161 (222)
190 PRK13599 putative peroxiredoxi 86.9 3.1 6.8E-05 39.3 8.2 91 179-273 27-154 (215)
191 cd01790 Herp_N Homocysteine-re 86.5 4.4 9.5E-05 32.1 7.5 71 368-444 2-78 (79)
192 cd01659 TRX_superfamily Thiore 86.4 1.9 4.1E-05 29.9 5.2 62 184-250 1-63 (69)
193 cd01813 UBP_N UBP ubiquitin pr 86.4 5 0.00011 31.1 7.8 69 369-442 2-71 (74)
194 cd03018 PRX_AhpE_like Peroxire 86.3 5.7 0.00012 34.4 9.1 30 231-261 98-133 (149)
195 cd03016 PRX_1cys Peroxiredoxin 85.9 2.9 6.3E-05 39.0 7.4 89 181-273 26-152 (203)
196 COG1308 EGD2 Transcription fac 85.6 1.7 3.6E-05 37.1 4.9 38 4-46 82-119 (122)
197 cd02973 TRX_GRX_like Thioredox 84.8 3.8 8.2E-05 30.4 6.3 56 184-246 3-58 (67)
198 PF06110 DUF953: Eukaryotic pr 84.7 2.5 5.4E-05 36.2 5.7 73 169-248 8-97 (119)
199 cd01800 SF3a120_C Ubiquitin-li 83.7 4.2 9.1E-05 31.5 6.3 62 376-444 6-68 (76)
200 PF08817 YukD: WXG100 protein 82.7 3.2 7E-05 32.5 5.3 71 367-442 2-77 (79)
201 KOG3763 mRNA export factor TAP 82.7 2 4.4E-05 45.7 5.2 43 10-53 535-577 (585)
202 COG1225 Bcp Peroxiredoxin [Pos 82.5 12 0.00026 33.6 9.4 97 173-273 23-154 (157)
203 PRK10877 protein disulfide iso 82.1 7.1 0.00015 37.4 8.4 38 230-273 192-229 (232)
204 PF09379 FERM_N: FERM N-termin 81.7 5.7 0.00012 30.8 6.4 63 372-436 1-65 (80)
205 PF02114 Phosducin: Phosducin; 81.6 6.7 0.00015 38.4 8.1 91 180-280 146-239 (265)
206 PF13192 Thioredoxin_3: Thiore 81.5 7.5 0.00016 30.0 6.9 69 188-271 6-75 (76)
207 cd01799 Hoil1_N Ubiquitin-like 81.4 5.9 0.00013 30.9 6.2 63 373-442 8-72 (75)
208 PF14560 Ubiquitin_2: Ubiquiti 80.0 13 0.00028 29.6 8.0 73 368-441 2-78 (87)
209 TIGR02196 GlrX_YruB Glutaredox 79.3 16 0.00034 26.9 8.0 67 185-270 3-72 (74)
210 KOG4277 Uncharacterized conser 77.5 5.6 0.00012 39.2 6.0 102 165-274 29-131 (468)
211 PRK11657 dsbG disulfide isomer 77.4 8.4 0.00018 37.3 7.3 40 231-272 210-249 (251)
212 PF11009 DUF2847: Protein of u 76.7 20 0.00044 29.9 8.4 81 178-267 17-104 (105)
213 cd02983 P5_C P5 family, C-term 75.7 13 0.00027 32.2 7.3 66 209-277 49-117 (130)
214 cd01815 BMSC_UbP_N Ubiquitin-l 73.7 9.9 0.00022 29.8 5.4 52 385-442 18-72 (75)
215 KOG1364 Predicted ubiquitin re 71.8 0.59 1.3E-05 46.7 -2.3 79 176-255 7-93 (356)
216 KOG3414 Component of the U4/U6 71.5 56 0.0012 28.3 9.7 98 172-276 13-121 (142)
217 PF11547 E3_UbLigase_EDD: E3 u 70.7 12 0.00026 26.5 4.6 40 11-50 10-49 (53)
218 smart00295 B41 Band 4.1 homolo 70.3 30 0.00065 31.5 9.0 70 367-436 3-72 (207)
219 KOG0190 Protein disulfide isom 69.5 11 0.00024 40.0 6.4 93 174-278 378-472 (493)
220 PF00462 Glutaredoxin: Glutare 69.2 15 0.00032 26.6 5.4 50 186-246 3-55 (60)
221 KOG0191 Thioredoxin/protein di 69.0 14 0.00031 37.9 7.1 97 175-278 157-255 (383)
222 CHL00098 tsf elongation factor 69.0 6.4 0.00014 36.8 4.1 39 12-51 3-41 (200)
223 COG5100 NPL4 Nuclear pore prot 68.5 18 0.00039 37.0 7.3 75 369-444 2-78 (571)
224 PLN02560 enoyl-CoA reductase 67.8 30 0.00065 34.6 8.8 72 369-443 2-81 (308)
225 COG0526 TrxA Thiol-disulfide i 67.2 25 0.00054 27.4 6.9 61 180-248 32-97 (127)
226 PRK12332 tsf elongation factor 66.9 7.5 0.00016 36.3 4.1 39 12-51 6-44 (198)
227 cd01801 Tsc13_N Ubiquitin-like 66.8 24 0.00052 27.3 6.4 55 385-443 20-75 (77)
228 KOG2792 Putative cytochrome C 66.7 21 0.00046 34.6 7.1 48 230-278 216-278 (280)
229 TIGR00116 tsf translation elon 66.1 7.4 0.00016 38.5 4.1 39 12-51 6-44 (290)
230 PF11470 TUG-UBL1: GLUT4 regul 66.1 15 0.00033 27.9 4.9 59 374-439 3-61 (65)
231 PRK09377 tsf elongation factor 65.7 7.7 0.00017 38.4 4.1 39 12-51 7-45 (290)
232 cd03028 GRX_PICOT_like Glutare 65.1 24 0.00052 28.2 6.3 56 180-248 7-70 (90)
233 PF03765 CRAL_TRIO_N: CRAL/TRI 62.8 12 0.00026 26.9 3.7 27 22-48 27-53 (55)
234 cd01795 USP48_C USP ubiquitin- 62.5 22 0.00047 29.4 5.4 55 384-444 21-75 (107)
235 KOG2756 Predicted Mg2+-depende 62.5 5 0.00011 39.0 2.0 35 16-50 30-64 (349)
236 PF02809 UIM: Ubiquitin intera 61.9 10 0.00022 21.2 2.4 16 308-323 2-17 (18)
237 cd01789 Alp11_N Ubiquitin-like 60.4 72 0.0016 25.2 8.1 74 368-443 2-79 (84)
238 TIGR03143 AhpF_homolog putativ 59.9 37 0.00081 36.7 8.5 84 173-271 468-554 (555)
239 PF14595 Thioredoxin_9: Thiore 58.2 9.3 0.0002 33.1 2.8 76 177-261 38-117 (129)
240 TIGR02200 GlrX_actino Glutared 56.3 33 0.00072 25.6 5.5 69 186-272 4-76 (77)
241 cd03020 DsbA_DsbC_DsbG DsbA fa 55.5 24 0.00052 32.5 5.3 37 228-270 160-196 (197)
242 smart00726 UIM Ubiquitin-inter 55.3 12 0.00027 22.9 2.2 18 308-325 1-18 (26)
243 PF06972 DUF1296: Protein of u 54.7 36 0.00078 25.3 4.9 39 11-50 6-45 (60)
244 TIGR00365 monothiol glutaredox 54.0 74 0.0016 25.8 7.4 55 180-248 11-74 (97)
245 TIGR02180 GRX_euk Glutaredoxin 53.2 23 0.00051 27.0 4.2 57 185-248 2-61 (84)
246 KOG1731 FAD-dependent sulfhydr 52.5 12 0.00026 40.1 3.1 101 166-276 46-154 (606)
247 KOG3077 Uncharacterized conser 51.5 7.3 0.00016 37.8 1.2 37 11-48 9-46 (260)
248 cd03072 PDI_b'_ERp44 PDIb' fam 51.4 40 0.00088 28.1 5.6 60 215-276 48-109 (111)
249 cd01777 SNX27_RA Ubiquitin dom 50.9 32 0.0007 27.7 4.5 34 368-401 2-35 (87)
250 COG0264 Tsf Translation elonga 50.0 21 0.00047 35.2 4.1 39 12-51 7-45 (296)
251 PF07449 HyaE: Hydrogenase-1 e 49.8 67 0.0015 26.9 6.5 52 208-263 52-103 (107)
252 cd03419 GRX_GRXh_1_2_like Glut 48.3 79 0.0017 23.9 6.5 55 185-248 3-60 (82)
253 cd03013 PRX5_like Peroxiredoxi 46.1 68 0.0015 28.4 6.5 67 179-249 28-98 (155)
254 PF03474 DMA: DMRTA motif; In 45.9 35 0.00075 23.2 3.4 25 23-47 14-38 (39)
255 KOG1071 Mitochondrial translat 44.9 28 0.00061 34.7 4.1 38 11-49 47-84 (340)
256 PRK15317 alkyl hydroperoxide r 44.6 1.1E+02 0.0023 32.8 8.9 88 173-273 108-196 (517)
257 KOG2456 Aldehyde dehydrogenase 43.7 24 0.00051 36.5 3.4 40 154-193 334-373 (477)
258 cd02066 GRX_family Glutaredoxi 43.2 95 0.0021 22.2 6.1 52 183-246 2-56 (72)
259 PF02401 LYTB: LytB protein; 43.1 65 0.0014 31.8 6.4 104 166-276 167-279 (281)
260 cd02976 NrdH NrdH-redoxin (Nrd 42.6 95 0.0021 22.4 6.0 51 185-246 3-56 (73)
261 PF02966 DIM1: Mitosis protein 42.5 1.6E+02 0.0036 25.6 7.9 92 177-276 17-118 (133)
262 KOG0011 Nucleotide excision re 42.1 75 0.0016 31.9 6.5 68 369-442 2-71 (340)
263 TIGR03140 AhpF alkyl hydropero 39.9 1.4E+02 0.0031 31.9 9.0 91 171-274 107-198 (515)
264 cd03027 GRX_DEP Glutaredoxin ( 39.8 1.1E+02 0.0024 22.9 6.0 48 189-248 8-58 (73)
265 cd03418 GRX_GRXb_1_3_like Glut 39.3 1.1E+02 0.0023 22.8 5.9 48 188-248 6-58 (75)
266 PRK05441 murQ N-acetylmuramic 39.1 35 0.00076 33.9 3.9 38 12-50 237-274 (299)
267 cd03029 GRX_hybridPRX5 Glutare 38.4 1.1E+02 0.0025 22.7 5.9 48 188-248 7-57 (72)
268 TIGR02183 GRXA Glutaredoxin, G 37.8 1.1E+02 0.0024 24.0 5.9 51 186-248 4-64 (86)
269 KOG1672 ATP binding protein [P 36.9 57 0.0012 30.4 4.5 84 168-261 73-156 (211)
270 PRK10824 glutaredoxin-4; Provi 36.7 1.9E+02 0.0041 24.5 7.4 64 170-246 5-76 (115)
271 cd04598 CBS_pair_GGDEF_assoc T 36.0 2.2E+02 0.0048 22.6 7.9 60 204-268 58-117 (119)
272 COG2103 Predicted sugar phosph 35.7 55 0.0012 32.0 4.4 40 11-51 234-273 (298)
273 TIGR02181 GRX_bact Glutaredoxi 35.5 1E+02 0.0023 23.3 5.3 48 189-248 6-56 (79)
274 TIGR00274 N-acetylmuramic acid 34.8 46 0.00099 33.0 3.9 39 11-50 231-269 (291)
275 PRK01045 ispH 4-hydroxy-3-meth 34.8 1.1E+02 0.0023 30.6 6.5 107 165-278 167-282 (298)
276 KOG0010 Ubiquitin-like protein 34.7 1.1E+02 0.0024 32.4 6.7 70 366-443 14-84 (493)
277 COG3531 Predicted protein-disu 33.9 86 0.0019 29.3 5.1 47 228-276 162-210 (212)
278 KOG0944 Ubiquitin-specific pro 31.5 52 0.0011 36.1 3.8 40 11-52 636-675 (763)
279 PRK12570 N-acetylmuramic acid- 30.5 56 0.0012 32.5 3.7 39 11-50 232-270 (296)
280 PF05768 DUF836: Glutaredoxin- 30.3 2.4E+02 0.0051 21.8 6.6 79 184-272 2-81 (81)
281 PRK11200 grxA glutaredoxin 1; 30.3 2E+02 0.0042 22.2 6.2 68 185-273 4-81 (85)
282 TIGR00216 ispH_lytB (E)-4-hydr 29.4 1.7E+02 0.0038 28.8 6.9 105 166-277 166-279 (280)
283 PF01216 Calsequestrin: Calseq 29.4 3.8E+02 0.0083 27.4 9.2 94 176-276 47-145 (383)
284 PHA03050 glutaredoxin; Provisi 28.9 2.8E+02 0.006 23.0 7.1 55 181-248 13-76 (108)
285 PTZ00062 glutaredoxin; Provisi 28.6 2.6E+02 0.0057 26.1 7.7 55 179-246 111-174 (204)
286 TIGR00601 rad23 UV excision re 28.4 97 0.0021 32.0 5.1 44 5-50 151-194 (378)
287 PRK10638 glutaredoxin 3; Provi 28.1 1.9E+02 0.0042 22.2 5.8 47 188-248 8-59 (83)
288 PRK12360 4-hydroxy-3-methylbut 27.8 1.9E+02 0.0042 28.5 6.9 102 166-276 169-279 (281)
289 TIGR02190 GlrX-dom Glutaredoxi 27.3 2.2E+02 0.0047 21.7 5.9 46 188-246 14-63 (79)
290 COG1999 Uncharacterized protei 26.1 1.5E+02 0.0033 27.7 5.6 40 236-276 166-205 (207)
291 KOG0005 Ubiquitin-like protein 25.5 1.6E+02 0.0036 21.9 4.4 66 369-441 2-67 (70)
292 PRK10329 glutaredoxin-like pro 25.1 2.8E+02 0.0061 21.5 6.2 63 188-269 7-71 (81)
293 PF00571 CBS: CBS domain CBS d 25.0 1.1E+02 0.0023 21.3 3.5 56 209-272 1-56 (57)
294 cd03073 PDI_b'_ERp72_ERp57 PDI 24.5 2.3E+02 0.005 23.6 5.9 62 209-274 43-110 (111)
295 KOG1752 Glutaredoxin and relat 24.0 1.1E+02 0.0024 25.5 3.8 57 180-246 13-73 (104)
296 cd01760 RBD Ubiquitin-like dom 23.9 2.4E+02 0.0052 21.8 5.4 44 370-414 2-45 (72)
297 KOG3425 Uncharacterized conser 23.2 2.2E+02 0.0048 24.5 5.4 54 167-228 13-77 (128)
298 cd04640 CBS_pair_27 The CBS do 22.8 4.2E+02 0.009 21.5 7.4 98 166-268 9-124 (126)
299 KOG0911 Glutaredoxin-related p 22.0 45 0.00098 31.7 1.2 77 179-264 16-92 (227)
300 TIGR02194 GlrX_NrdH Glutaredox 21.9 2.5E+02 0.0055 20.8 5.3 60 188-267 5-68 (72)
301 PF08207 EFP_N: Elongation fac 21.3 1.4E+02 0.0031 21.8 3.6 26 365-390 32-58 (58)
302 TIGR02189 GlrX-like_plant Glut 20.9 1.8E+02 0.0039 23.6 4.5 53 181-248 8-68 (99)
303 cd01818 TIAM1_RBD Ubiquitin do 20.9 2.1E+02 0.0046 22.5 4.5 39 372-411 4-42 (77)
304 PF07912 ERp29_N: ERp29, N-ter 20.1 2.9E+02 0.0062 23.9 5.5 46 226-272 67-116 (126)
No 1
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-43 Score=339.32 Aligned_cols=345 Identities=37% Similarity=0.687 Sum_probs=242.9
Q ss_pred hhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCCCCCccCCCCCCCCCccccCCCCCCCC
Q 013325 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANPGPEENSVTAGQEIGDEV 87 (445)
Q Consensus 8 ~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~V 87 (445)
.+...+|++||+||..++.+.|++||.+++|||+.||++||+........+ ....+
T Consensus 4 ~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s------------------------~~~~a 59 (356)
T KOG1364|consen 4 GAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYS------------------------SSSAA 59 (356)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccC------------------------CcccC
Confidence 344669999999955589999999999999999999999999765422111 01122
Q ss_pred CCCCcccccccccccccccCCCCCCCCCCCCccc-ccccchhhhcCCCcccCcCCCCCCCcchHHHHHhhcCCCCcCccc
Q 013325 88 RAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLI-AFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFN 166 (445)
Q Consensus 88 raP~~~~~~~Lv~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~f~pp~~~~~~ 166 (445)
..|+++++++|+.+. |-+ . . .+.++. +-. +|++. +...+++.+|+++|+||+.|++.
T Consensus 60 ~sp~~~~re~l~~~~---~~~--d--~-~~~s~~~p~~----------~~~~~----s~~~~~~srL~slfrpp~~i~~~ 117 (356)
T KOG1364|consen 60 PSPIEPQREVLFDPL---GIM--D--Q-STSSILDPSE----------NQDDE----SEHASSQSRLASLFRPPTDILSH 117 (356)
T ss_pred CCcccccceeeeccc---ccc--c--c-CcccccCccc----------ccchh----hhhccccchhhhhcCCCcchhhc
Confidence 348888999997642 100 0 0 001110 111 11111 11234567899999999999999
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
|++++|+..|.++.+||||+ .++.+|.++..+|++...|+|+|
T Consensus 118 gsld~ak~~a~sk~~wllV~-------------------------------------~Dtseg~~~~~Fy~~~~~P~i~i 160 (356)
T KOG1364|consen 118 GSLDAAKSTASSKQRWLLVL-------------------------------------DDTSEGQPFSAFYHISSLPHIAI 160 (356)
T ss_pred CChhhhhhcccccceEEEEe-------------------------------------eccCCCCchhhheeccCCceEEE
Confidence 99999999999999999993 45567777888999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhhhcCCccccccccCCCCCCCCCCccccCCCCCc-chHHHHHHHHHHhHHHhc
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPD-IENEELLQALAASMETIK 325 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~~~~~~~~~~~~r~~~e~~~~~~~~~~~r~-~ede~~~~al~~sl~~~~ 325 (445)
|||+||+.+++|.|.+.+..|++.|..|++.+++++-+.+...|++... ...-.. +|+.+++.|+.+++-.-.
T Consensus 161 iDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~d~vas~t~n~~~p~~------e~~~~ss~e~~~~elai~~sv~~~~ 234 (356)
T KOG1364|consen 161 IDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPHDEVASLTRNRKRPKT------EPTCLSSEEDMQMELAIKNSVVNPS 234 (356)
T ss_pred ECCchhhhhhhhccccCHHHHHHHHHHHHhcCCccccccccccccCCCC------CccccccccchhhhcccccccccCC
Confidence 9999999999999999999999999999999998854444333322211 001112 367766777777765432
Q ss_pred ccCCCCCCcccccCc-chhhhhh-hcCCCCCCCCCCCCC--CCCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhc
Q 013325 326 DASGVSSSDTDVAST-DKDEASA-TEKPAYPILPEEPKV--DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL 401 (445)
Q Consensus 326 ~~~~~~ee~~~~~~~-e~~e~~~-~~~~~~~~lp~EP~~--~~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~ 401 (445)
-... .++ +-... ++.|... ...-..+.+..||.. ..+-+|+|+||||||+|.+|||.++++++.||.||.++.
T Consensus 235 ~~~e--~e~-~~~s~~ee~e~~~e~~~~~~~~a~~ep~~~~~~svvt~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~ 311 (356)
T KOG1364|consen 235 SGTE--FEG-QGASDEEELETVLEEDLFVFPVATVEPKGDCDRSVVTSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHM 311 (356)
T ss_pred Cccc--ccC-CCCcccchhhccccccccccceeeecCCCCCCccceeEEEEecCCccHHHHhhccccHHHHHHHHHHHhh
Confidence 1101 000 00000 0001000 001122333344433 335588899999999999999999999999999999999
Q ss_pred CCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCc--eEEEEeC
Q 013325 402 EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA--MISVTWE 445 (445)
Q Consensus 402 ~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~--~v~v~~~ 445 (445)
+++....|+|++.||++ +++.++.+.||+|+||.|+ .+.++|+
T Consensus 312 dg~~k~~FkLv~a~P~~-k~l~~~~daT~~eaGL~nS~~~~~~e~e 356 (356)
T KOG1364|consen 312 DGSDKKRFKLVQAIPAS-KTLDYGADATFKEAGLANSETLLSVEWE 356 (356)
T ss_pred cccccccceeeecccch-hhhhccccchHHHhccCccccccccccC
Confidence 99999999999999976 6888889999999999998 5666664
No 2
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=99.97 E-value=4.6e-32 Score=277.72 Aligned_cols=285 Identities=20% Similarity=0.278 Sum_probs=203.0
Q ss_pred hHHHHHhhcCCCCcCcccCcHHHHHHHHHHc----CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeec
Q 013325 149 SRDNLASLYRPPFHLMFNGSFEKAKDAASVQ----DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYD 224 (445)
Q Consensus 149 ~~~~l~~~f~pp~~~~~~gs~~eA~~~Ak~~----~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~ 224 (445)
..+.|.+.|+..++.||.|.+..|...|..+ .|+|++|+|++...+... ||..||||+.|++||+++||+|.+++
T Consensus 147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~-F~~~iL~~e~v~~~l~~~~llw~~dv 225 (460)
T KOG1363|consen 147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNV-FCGQILCNEAVVDYLRENFLLWGWDV 225 (460)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHH-HHHhhhhhHHHHHHHhhceeeecccc
Confidence 3466889999999999999999888888654 599999999999999999 99999999999999999999999999
Q ss_pred CChhHHHHHHHcCCC----------------CCcEEEEEeCCC-C-ceeEEEecCCChHHHHHHHHhhhhcCCccccccc
Q 013325 225 DTSEGKKVCTYYKLD----------------SIPVVLVVDPIT-G-QKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKV 286 (445)
Q Consensus 225 ~s~eg~~~~~~y~v~----------------~~P~l~ii~p~t-g-~~~~~~~G~~~~~~~l~~L~~~~~~~~~~~~~~~ 286 (445)
.+++++.+.+.+.+. .||.+.++.... . +++..++|.++.++.+..+..++..+...
T Consensus 226 t~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~----- 300 (460)
T KOG1363|consen 226 TESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERR----- 300 (460)
T ss_pred cCchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHH-----
Confidence 999999999988877 455554433211 1 23444455555555555554444433211
Q ss_pred cCCCCCCCCCCccccCCCCCcchHHHHHHHHHHhHHHhcccCCCCCCccc----ccCcchhhhhhhcCCCCCCCCCCCCC
Q 013325 287 SHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDTD----VASTDKDEASATEKPAYPILPEEPKV 362 (445)
Q Consensus 287 ~~~r~~~e~~~~~~~~~~~r~~ede~~~~al~~sl~~~~~~~~~~ee~~~----~~~~e~~e~~~~~~~~~~~lp~EP~~ 362 (445)
.+.+.+.+. ..+ ....++++||.+|++.++++..+..+++.+.++.+. +++++++|......+....+|+||.+
T Consensus 301 ~q~~~~~~~-er~-~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a 378 (460)
T KOG1363|consen 301 LQMRRSEQD-ERE-ARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSA 378 (460)
T ss_pred Hhhcccchh-HHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCc
Confidence 011111110 000 011245667999999999988872222111111111 11111222222234567789999977
Q ss_pred CCCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC--ceE
Q 013325 363 DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN--AMI 440 (445)
Q Consensus 363 ~~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~--~~v 440 (445)
...++++|+||+|+|.|..|||..+++++.||+||.++ +.....|.|+++|||+.+. ......||++.||.+ .+|
T Consensus 379 ~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~--~~~~~e~~~~~~fPr~~~~-~~~~~~sl~~~~l~p~qe~l 455 (460)
T KOG1363|consen 379 SEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN--GFHPEEYSLNTSFPRRPLG-DYEHSSSLQDIGLTPRQETL 455 (460)
T ss_pred CcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc--cCCchhhccccCCCccccc-ccccccccccCCccccccee
Confidence 78899999999999999999999999999999999997 4678899999999999733 344689999999975 778
Q ss_pred EEEe
Q 013325 441 SVTW 444 (445)
Q Consensus 441 ~v~~ 444 (445)
.++|
T Consensus 456 flE~ 459 (460)
T KOG1363|consen 456 FLEE 459 (460)
T ss_pred eeec
Confidence 8877
No 3
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.94 E-value=5.8e-26 Score=193.73 Aligned_cols=114 Identities=23% Similarity=0.417 Sum_probs=109.1
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 164 ~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
||+|+|++|++.||++.|+||||||++.|.+|.. |||+||+|++|+++|++|||+|++|+.++||+++++.+++.+||+
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~-fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~ 79 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDE-FCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPF 79 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHH-HHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCE
Confidence 6999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCc--eeEEEecCCChHHHHHHHHhhhhcC
Q 013325 244 VLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 244 l~ii~p~tg~--~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
++||+|++++ ++.+++|.+++++|+..|+.+++.+
T Consensus 80 ~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 80 LAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 9999988764 6899999999999999999998753
No 4
>smart00594 UAS UAS domain.
Probab=99.93 E-value=1.1e-25 Score=194.33 Aligned_cols=116 Identities=48% Similarity=0.744 Sum_probs=109.3
Q ss_pred hcCCCC-cCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHH
Q 013325 156 LYRPPF-HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCT 234 (445)
Q Consensus 156 ~f~pp~-~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~ 234 (445)
.|.||+ |.||.|+|++|++.|++++|++|||||+++|..|+. |||+||+|++|+++|++|||+|++++.++||..+++
T Consensus 2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~-~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~ 80 (122)
T smart00594 2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQV-FNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQ 80 (122)
T ss_pred CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHH-HHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHH
Confidence 466777 889999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEEeCCCCc----eeEEEecCCChHHHHHHHH
Q 013325 235 YYKLDSIPVVLVVDPITGQ----KMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 235 ~y~v~~~P~l~ii~p~tg~----~~~~~~G~~~~~~~l~~L~ 272 (445)
.|++.+||+++||+|.+|+ ++.++.|.+++++|+..|.
T Consensus 81 ~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 81 FYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred hcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhhC
Confidence 9999999999999999874 5778899999999998773
No 5
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.92 E-value=9.8e-25 Score=185.93 Aligned_cols=113 Identities=48% Similarity=0.900 Sum_probs=109.8
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 164 ~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
||.|+|++|++.|++++||||||||+++|..|+. |+++||+|++|+++|++|||+|.+++++++|..++..|++..+|+
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~-~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~ 79 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQV-LNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPH 79 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHH-HHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCe
Confidence 6899999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
++||+|++|+++.++.|.+++++|+..|..++..
T Consensus 80 ~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 80 IAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 9999998899999999999999999999998764
No 6
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.91 E-value=7.9e-24 Score=183.82 Aligned_cols=114 Identities=23% Similarity=0.297 Sum_probs=106.1
Q ss_pred cccCcHHHHHHHH----HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh-----------
Q 013325 164 MFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE----------- 228 (445)
Q Consensus 164 ~~~gs~~eA~~~A----k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e----------- 228 (445)
||.|+|++|++.| +++.|+|+||||++++.+|.. |||++|||+.|++||++|||+|++|+..++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~-Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~ 79 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNV-FCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTR 79 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHH-HHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhh
Confidence 6999999999999 999999999999999999999 999999999999999999999999999987
Q ss_pred -----HHHHHHHcCCCCCcEEEEEeCCCC--ceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 229 -----GKKVCTYYKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 229 -----g~~~~~~y~v~~~P~l~ii~p~tg--~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+.+.++.++++.||+++||.+..+ +++.+++|.++++++++.|..+++.|
T Consensus 80 ~~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 80 HFGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred hhhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 455777889999999999998765 58899999999999999999998754
No 7
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=205.61 Aligned_cols=110 Identities=22% Similarity=0.406 Sum_probs=103.1
Q ss_pred CcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 163 ~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
+||+|++.+|+..||..++.++|||.++++. ++. |+|-+|.+..|.+.+...||...+...+..+.+|+..|++...|
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gddE~-s~k-l~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vP 79 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGDDEE-SDK-LNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVP 79 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecCchH-hhH-HhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccccccc
Confidence 6899999999999999999999999997654 677 89999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 243 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
++++|+ .+|..+.++.|++++++|.+.|.+++
T Consensus 80 s~ffIg-~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 80 SIFFIG-FSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred ceeeec-CCCceeEEeeccccHHHHHHHHHHHH
Confidence 999999 58999999999999999998887764
No 8
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.85 E-value=3.8e-21 Score=152.53 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=70.0
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEEeC
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 445 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~~~ 445 (445)
++|+||||||||+|++|||+.+|||++||+||.++.++....+|.|+++||+|. +.++ ++||+|+||.|++|+++|.
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~--l~~~-~~Tl~eagL~~s~v~q~~~ 79 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKE--LSDE-SLTLKEANLLNAVIVQRLK 79 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcc--cCCC-CCcHHHCCCcCcEEEEEeC
Confidence 579999999999999999999999999999999976555568999999999987 5544 9999999999999999995
No 9
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.81 E-value=1.3e-19 Score=145.57 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=68.0
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccC----CCCcCCchhhcCCcCceE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSL----DYDSKLTFEDSGLANAMI 440 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l----~~~~~~Tl~e~gL~~~~v 440 (445)
+++|+|+||||||+|++|||+.+++|++||+||.+. +..+..|+|+++||||.+.- ..+.++||+|+||.++++
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~--~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~ 79 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL--KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV 79 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC--CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence 468999999999999999999999999999999764 44678999999999997321 136789999999999988
Q ss_pred EEEeC
Q 013325 441 SVTWE 445 (445)
Q Consensus 441 ~v~~~ 445 (445)
|++++
T Consensus 80 L~V~d 84 (85)
T cd01774 80 LFVQD 84 (85)
T ss_pred EEEec
Confidence 88764
No 10
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.81 E-value=1.5e-19 Score=142.88 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=67.2
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~ 443 (445)
.++|+|+||||||+|++|||..+++|++||.||.++ ++...+|+|+++||||++. ..+.++||+|+||+|++++++
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~--g~~~~~f~L~t~FPRr~~~-~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK--GYPNERFELLTNFPRRKLS-HLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCcccC-CcccCCCHHHcCCCCCcEEEE
Confidence 568999999999999999999999999999999995 5678999999999999854 367789999999997665543
No 11
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=99.81 E-value=1.5e-19 Score=143.21 Aligned_cols=75 Identities=27% Similarity=0.510 Sum_probs=68.2
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCC-CcCCchhhcCCcCceEEEEeC
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDY-DSKLTFEDSGLANAMISVTWE 445 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~-~~~~Tl~e~gL~~~~v~v~~~ 445 (445)
+|+|+||||||+|++|||+.+++|++||+||.++. ....+|.|+++|||+. +.+ +.++||+|+||.|++++|+|.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~--~~~~~f~L~t~~Pr~~--~~~~~~~~TL~e~gL~~s~~~~~~~ 77 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNG--PPAEPFTLMTSFPRRV--LTDLDYELTLQEAGLVNEVVFQRLK 77 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcC--CCCCCEEEEeCCCCcc--CCCCCccCcHHHcCCccceEEEEeC
Confidence 79999999999999999999999999999999874 3478899999999997 433 589999999999999999995
No 12
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.80 E-value=3.2e-19 Score=141.71 Aligned_cols=76 Identities=22% Similarity=0.442 Sum_probs=65.9
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCce-EEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-v~v~ 443 (445)
.++|+|+||||||+|++|||+.+++|++||+||.++ ++...+|+|+++||||++. ..+.++||+|+||.++. |+|+
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEE
Confidence 468999999999999999999999999999999986 6677899999999999843 35778999999999654 5553
No 13
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=99.74 E-value=7.5e-18 Score=134.43 Aligned_cols=77 Identities=26% Similarity=0.471 Sum_probs=64.9
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
+.|+|+||||||+|++|+|+.+++|++||+||.... +....+|.|+++|||+.+. ..+.++||+|+||. +++|+|+|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~-~~~~~~f~L~t~~Prk~l~-~~d~~~tL~e~gL~p~~~l~v~~ 80 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL-TDGNDPFTLNSPFPRRTFT-KDDYSKTLLELALLPSSTLVLEP 80 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc-cCCCCCEEEEeCCCCcCCc-cccccCCHHHCCCCCceEEEEeC
Confidence 589999999999999999999999999999996643 4456789999999999722 23458999999998 56677776
No 14
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=99.74 E-value=7.2e-18 Score=135.15 Aligned_cols=79 Identities=38% Similarity=0.563 Sum_probs=65.8
Q ss_pred CCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 364 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
..+.|+|+||||||++++|+|+.++||++||+||..+........|.|+++|||+. +..+.++||+|+||. +++|+|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~--l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRE--LTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEE--CCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcC--CCccccccHHHhcCCCCeEEEE
Confidence 35689999999999999999999999999999999986543333499999999987 333336999999998 577888
Q ss_pred Ee
Q 013325 443 TW 444 (445)
Q Consensus 443 ~~ 444 (445)
+|
T Consensus 81 ~~ 82 (82)
T PF00789_consen 81 EK 82 (82)
T ss_dssp E-
T ss_pred EC
Confidence 88
No 15
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.73 E-value=1.4e-17 Score=132.47 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=65.4
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~ 443 (445)
...|+|+||||||+|++++|+.+++|++||+||.++. ....+|.|+++||||.+. .++.++||+|+||.|++++++
T Consensus 2 ~~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~--~~~~~f~L~t~fPrk~~~-~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 2 YTETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNT--GNGGPFTLMTPFPRKVFT-EDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred CcEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcC--CCCCCEEEEeCCCCeECC-cccccCCHHHCCCCCceEEEE
Confidence 3579999999999999999999999999999999864 235789999999999733 346789999999998776664
No 16
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.48 E-value=1.9e-13 Score=109.36 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=71.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
..+|++|++.|++++|||||++++++|..|+. |.+.+|.++.|.++++++||++.++++..++...... ..+|+++
T Consensus 3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~-l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~ 78 (82)
T PF13899_consen 3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKK-LEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFF 78 (82)
T ss_dssp ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHH-HHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEE
T ss_pred hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHH-HHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEE
Confidence 46899999999999999999999999999999 9999999999999999999999999988776542222 4499999
Q ss_pred EEeC
Q 013325 246 VVDP 249 (445)
Q Consensus 246 ii~p 249 (445)
|++|
T Consensus 79 ~ldp 82 (82)
T PF13899_consen 79 FLDP 82 (82)
T ss_dssp EEET
T ss_pred EeCC
Confidence 9997
No 17
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.36 E-value=1.2e-12 Score=113.14 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=77.2
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
+..+|++|++.|++++|+|||+++++||..|+. |.+.+|.+++|+++++++||...++.+.++...- .. ...+|++
T Consensus 8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~-l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~--~~-g~~vPti 83 (130)
T cd02960 8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQA-LKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS--PD-GQYVPRI 83 (130)
T ss_pred chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHH-HHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC--cc-CcccCeE
Confidence 445999999999999999999999999999999 9999999999999999999988888765531110 01 1469999
Q ss_pred EEEeCCCCceeEEEecC
Q 013325 245 LVVDPITGQKMRSWCGM 261 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~ 261 (445)
+|+++ +|+++.++.|.
T Consensus 84 vFld~-~g~vi~~i~Gy 99 (130)
T cd02960 84 MFVDP-SLTVRADITGR 99 (130)
T ss_pred EEECC-CCCCccccccc
Confidence 99998 48888888874
No 18
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.33 E-value=1.4e-11 Score=106.30 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh-HHH-HH----HHcCCCCCcE
Q 013325 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE-GKK-VC----TYYKLDSIPV 243 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e-g~~-~~----~~y~v~~~P~ 243 (445)
++|++.|++++|+|||+++.+||..|+. |.+.+|.+++|.++|+++||+..+|++... -.. +. ..|++..+|+
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~-me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHV-MEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHH-HHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 5789999999999999999999999999 999999999999999999999999986532 111 21 2468899999
Q ss_pred EEEEeCCCCceeEEEecC
Q 013325 244 VLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~ 261 (445)
++|++| +|+.+....+.
T Consensus 84 ~vfl~~-~G~~~~~~~~~ 100 (124)
T cd02955 84 NVFLTP-DLKPFFGGTYF 100 (124)
T ss_pred EEEECC-CCCEEeeeeec
Confidence 999998 58888665543
No 19
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=99.33 E-value=1.4e-12 Score=128.98 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=71.8
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEEe
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 444 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~~ 444 (445)
+++|.|||||+||+|++-+|+.++||.+||.||....++.....|.|+++||.+. | .|.+.||++|||.|++|+++|
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~--l-~D~sqTle~AgL~Nsvlvqr~ 379 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKP--L-SDDSQTLEEAGLLNSVLVQRL 379 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcc--c-CCcchhHHhccchhhhhhhhc
Confidence 4589999999999999999999999999999999988877778999999999986 5 578999999999999999987
Q ss_pred C
Q 013325 445 E 445 (445)
Q Consensus 445 ~ 445 (445)
.
T Consensus 380 ~ 380 (380)
T KOG2086|consen 380 A 380 (380)
T ss_pred C
Confidence 4
No 20
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.33 E-value=1.3e-12 Score=91.34 Aligned_cols=42 Identities=26% Similarity=0.706 Sum_probs=36.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
+++|.+||+| ||+++++|++||+++||||+.||++||+.+++
T Consensus 1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3589999999 79999999999999999999999999997654
No 21
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.31 E-value=3e-11 Score=104.19 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcC-CeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh-----------hHHHHHHHc
Q 013325 169 FEKAKDAASVQD-KWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS-----------EGKKVCTYY 236 (445)
Q Consensus 169 ~~eA~~~Ak~~~-K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~-----------eg~~~~~~y 236 (445)
+-++++.|++++ |++||+++++||..|+. |...++.++.+...++++|+++.++++.. ....++..|
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~-~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDK-LKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHH-HHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 567899999999 99999999999999999 99999999999999999999999998754 346789999
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
++..+|+++|+++..|+++.++.|..+.+.|...|..+++.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999999985479999999999999998888887764
No 22
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8.2e-12 Score=117.78 Aligned_cols=78 Identities=18% Similarity=0.387 Sum_probs=67.6
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCce-EEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-v~v~ 443 (445)
...|+||||||||+.+...|+...+|..|..||+.+. +.+..+|.|.++|||+.|. ..|..++|+++||.|++ |++.
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~-~~~~~P~~f~t~fPR~tf~-edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNR-GDGLDPYSFHTGFPRVTFT-EDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred ccceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhc-cCCCCCeeeecCCCceecc-cccccccHHHhccccchheecc
Confidence 4799999999999999999999999999999999875 3345699999999999866 46899999999999755 4544
Q ss_pred e
Q 013325 444 W 444 (445)
Q Consensus 444 ~ 444 (445)
|
T Consensus 286 ~ 286 (290)
T KOG2689|consen 286 P 286 (290)
T ss_pred c
Confidence 4
No 23
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.17 E-value=1.8e-10 Score=96.00 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh--hHHHHHHHcCCCCCcEEEEEe
Q 013325 171 KAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 171 eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~--eg~~~~~~y~v~~~P~l~ii~ 248 (445)
+++..|.+++|++||+++.+||..|+. |...++.++.+.+.++.++++..++++.. ....+++.|++..+|+++|++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~-~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKV-NEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHH-HHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 567788899999999999999999999 98888888999999988999999988653 257899999999999999999
Q ss_pred CCCCceeEEEecCCChHHHHHHH
Q 013325 249 PITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
+-+|+.+.++.|..+.++|...|
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHh
Confidence 74578888899999999888765
No 24
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.05 E-value=6.9e-10 Score=99.44 Aligned_cols=107 Identities=17% Similarity=0.288 Sum_probs=70.5
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHc--------
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY-------- 236 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y-------- 236 (445)
+..-.++|++.|++++|+|||.|..++|..|++ |.++++.|++|.++||++||...+|.+.... +...|
T Consensus 22 W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChv-M~~esf~d~eVa~~lN~~FI~VkvDree~Pd--id~~y~~~~~~~~ 98 (163)
T PF03190_consen 22 WQPWGEEALEKAKKENKPIFLSIGYSWCHWCHV-MERESFSDPEVAEYLNRNFIPVKVDREERPD--IDKIYMNAVQAMS 98 (163)
T ss_dssp -B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHH-HHHHTTT-HHHHHHHHHH-EEEEEETTT-HH--HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHhcCCcEEEEEEecCCcchhh-hcccCcCCHHHHHHHhCCEEEEEeccccCcc--HHHHHHHHHHHhc
Confidence 444457999999999999999999999999999 9999999999999999999999988766322 22222
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCCh------HHHHHHHHhhhh
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQP------ESLLEDLVPFMD 276 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~------~~~l~~L~~~~~ 276 (445)
+..++|..+|++| .|+.+.. .++..+ ..|+..|..+-+
T Consensus 99 ~~gGwPl~vfltP-dg~p~~~-~tY~P~~~~~g~~~f~~~l~~i~~ 142 (163)
T PF03190_consen 99 GSGGWPLTVFLTP-DGKPFFG-GTYFPPEDRYGRPGFLQLLERIAE 142 (163)
T ss_dssp S---SSEEEEE-T-TS-EEEE-ESS--SS-BTTB--HHHHHHHHHH
T ss_pred CCCCCCceEEECC-CCCeeee-eeecCCCCCCCCccHHHHHHHHHH
Confidence 6789999999999 5776644 223433 256655555544
No 25
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.2e-09 Score=92.00 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh--------------HHHHH
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------GKKVC 233 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e--------------g~~~~ 233 (445)
+.-++.+.|.-.+|.||+-+.+..|..|.. |.+++...+.+++++..||.++-+++...+ -..++
T Consensus 30 ~~~~d~ksi~~~~Kylllmfes~~C~yC~~-~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa 108 (182)
T COG2143 30 DVFDDNKSISPNDKYLLLMFESNGCSYCER-FKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELA 108 (182)
T ss_pred hhHHHHHhcCccCcEEEEEEcCCCChHHHH-HHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHH
Confidence 345677778889999999999999999999 999999999999999999999998876532 14789
Q ss_pred HHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 234 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 234 ~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+.|++.++|++++.| .+|+.+..+.|+++|+.|+..|.-+
T Consensus 109 ~kf~vrstPtfvFfd-k~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 109 QKFAVRSTPTFVFFD-KTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred HHhccccCceEEEEc-CCCCEEEecCCCCCHHHHHHHHHHH
Confidence 999999999999999 5899999999999999999876544
No 26
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.96 E-value=6.5e-10 Score=93.60 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=77.6
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh------------------HHHHHHHcC
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------------GKKVCTYYK 237 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e------------------g~~~~~~y~ 237 (445)
|+.++|+++|++.+++|..|+. |.+.++.++++...++.+|.++.++.+... ...++..|+
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKK-LEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHH-HHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEEECCCCHHHHH-HHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 4678999999999999999999 999999999999999988988888887654 245888999
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHH
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
+..+|+++++++ .|+++.++.|..++++|++.|
T Consensus 80 v~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred CCccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 999999999994 699999999999999998876
No 27
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.83 E-value=7.3e-09 Score=88.62 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCC--CcEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVL 245 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~--~P~l~ 245 (445)
+|++|++.|+.++|++||+++.+||..|+. |...+...+.+.. ++.+||...++.+.. .....|++.. +|+++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~-~~~~~~~~~~~~~-~~~~fv~v~vd~~~~---~~~~~~~~~g~~vPt~~ 81 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKA-LKPKFAESKEISE-LSHNFVMVNLEDDEE---PKDEEFSPDGGYIPRIL 81 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHH-HHHHHhhhHHHHh-hcCcEEEEEecCCCC---chhhhcccCCCccceEE
Confidence 799999999999999999999999999999 9888777666655 677899886655432 1234677765 99999
Q ss_pred EEeCCCCceeEEE---ecCCChHHHHHHHHhhhh
Q 013325 246 VVDPITGQKMRSW---CGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 246 ii~p~tg~~~~~~---~G~~~~~~~l~~L~~~~~ 276 (445)
|+++ +|+++.++ .|+.....|.+.|..+++
T Consensus 82 f~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 82 FLDP-SGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred EECC-CCCCchhhccCCCCccccccCCCHHHHHh
Confidence 9997 58877644 456666666665555443
No 28
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.80 E-value=2.6e-08 Score=107.25 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=92.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC--hhHHHHHHHcCCCCCcEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s--~eg~~~~~~y~v~~~P~l 244 (445)
.+++++++.|+.++|+++|+++.+||..|+. +.+.++.+++|.+.++ +|++.++|++. .+...+++.|++..+|++
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~-~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~ 538 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKE-FEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTI 538 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHH-HHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEE
Confidence 4678999999999999999999999999999 9999999999999986 68999999875 356789999999999999
Q ss_pred EEEeCCCCce--eEEEecCCChHHHHHHHHhh
Q 013325 245 LVVDPITGQK--MRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 245 ~ii~p~tg~~--~~~~~G~~~~~~~l~~L~~~ 274 (445)
+++++ +|+. ..++.|..++++|++.|.+.
T Consensus 539 ~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 539 LFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence 99996 5776 46788999999999888764
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.66 E-value=3.4e-07 Score=81.07 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=78.6
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
+.|...+|++||+++.+||..|+. |...+- .+.+-....+-|+.++++..+...++..|++..+|+++|+++ +|+
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~-~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~ 88 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQE-MAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGN 88 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHH-hHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCC
Confidence 445678999999999999999998 643221 233333344556666777666667889999999999999985 699
Q ss_pred eeEEEecCCChHHHHHHHHhhhhcCC
Q 013325 254 KMRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
++.++.|..+.++|...|...+...+
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999988888887553
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.37 E-value=5.5e-06 Score=67.54 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013325 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 169 ~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 248 (445)
|++.+. ...++++||+++.+||..|+. +...+ ..+...+...+.+..++.+. ...++..|++..+|+++|+.
T Consensus 3 f~~~i~--~~~~~~vlv~f~a~wC~~C~~-~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 3 FQQVLQ--ESTQVPVVVDFWAPRSPPSKE-LLPLL---ERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred hHHHHH--hcCCCeEEEEEECCCChHHHH-HHHHH---HHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEe
Confidence 444443 235889999999999999999 64432 34444455567788777755 45789999999999999997
Q ss_pred CCCCceeEEEecCCChHHHHHHH
Q 013325 249 PITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
.|+.+.++.|..+.+++...|
T Consensus 75 --~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 --AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --CCEEeeeecCCCCHHHHHHHh
Confidence 688888899988888776654
No 31
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.6e-06 Score=73.99 Aligned_cols=105 Identities=24% Similarity=0.337 Sum_probs=84.9
Q ss_pred CcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhHHHHHHHcC
Q 013325 161 FHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYK 237 (445)
Q Consensus 161 ~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg~~~~~~y~ 237 (445)
..++-.-+..+-...-.+..+|+||.+|.+||.+|+. |. |-+-++.. ..|-||.+|.+ +...++..|.
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~-l~------P~l~~~~~~~~g~~k~~kvdtD--~~~ela~~Y~ 112 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKM-LG------PILEELVSEYAGKFKLYKVDTD--EHPELAEDYE 112 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhH-hh------HHHHHHHHhhcCeEEEEEEccc--cccchHhhcc
Confidence 3444556778888888999999999999999999999 63 44444444 46899976664 4567899999
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|..+|+++++. +|+.+.++.|..+.+.+.+.+.+++.
T Consensus 113 I~avPtvlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 113 ISAVPTVLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeeEEEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999998 69999999999999888888887764
No 32
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.32 E-value=6.1e-06 Score=67.97 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=69.5
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 252 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg 252 (445)
.+.+++++++|+++++||..|+. +...+ ..+.+.+. ..+++..++.+..+...++..|++..+|++.++. .|
T Consensus 12 ~~~~~~~~~~v~f~a~wC~~C~~-~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~--~g 85 (104)
T cd02997 12 KFLKKEKHVLVMFYAPWCGHCKK-MKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE--NG 85 (104)
T ss_pred HHHhhCCCEEEEEECCCCHHHHH-hCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe--CC
Confidence 33456779999999999999998 65443 24444454 5688888888776677889999999999987775 57
Q ss_pred ceeEEEecCCChHHHHHH
Q 013325 253 QKMRSWCGMVQPESLLED 270 (445)
Q Consensus 253 ~~~~~~~G~~~~~~~l~~ 270 (445)
+++..+.|..+++.++..
T Consensus 86 ~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 86 KFVEKYEGERTAEDIIEF 103 (104)
T ss_pred CeeEEeCCCCCHHHHHhh
Confidence 888889999888877653
No 33
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.30 E-value=1.2e-05 Score=66.05 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
+|.=....++ .+|+++|++.++||..|+. +... + +++.+-++.++.++.+|++.. ..++..|++..+|+++|+
T Consensus 2 ~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~-~~~~-l--~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 2 SYALRKLYHE-SDRLILVLYTSPTCGPCRT-LKPI-L--NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred chhHHHHHHh-CCCeEEEEEECCCChhHHH-HHHH-H--HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEE
Confidence 4433333334 8899999999999999998 6443 2 455556666788888887653 357889999999999999
Q ss_pred eCCCCceeEEEecCCChHHHHHHH
Q 013325 248 DPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
. .|+++..+.|..+.++|.+.|
T Consensus 75 ~--~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 75 K--DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred E--CCeEEEEEeCCccHHHHHHhh
Confidence 6 589999999988888877654
No 34
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.29 E-value=9.5e-06 Score=67.54 Aligned_cols=93 Identities=17% Similarity=0.340 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCCh-hHHHHHHHcCCCCCcEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTS-EGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~-eg~~~~~~y~v~~~P~l 244 (445)
.|++++..+ .+|++||+++.+||..|+. +. +.+.++-+ .++.|..++.+.. +...++..|++..+|++
T Consensus 5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~-~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~ 75 (103)
T cd02985 5 ELDEALKKA--KGRLVVLEFALKHSGPSVK-IY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHF 75 (103)
T ss_pred HHHHHHHHc--CCCEEEEEEECCCCHhHHH-Hh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEE
Confidence 455555433 4899999999999999998 63 44444433 3678888888764 34679999999999998
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
.|+. .|+++.++.|. .+.++...+.
T Consensus 76 ~~~~--~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 76 LFYK--DGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred EEEe--CCeEEEEEeCC-CHHHHHHHHH
Confidence 7773 79999999994 5666665544
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=98.28 E-value=1.3e-05 Score=70.70 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=72.8
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.+.+++|+++|+++.+||..|+. |.. +| ..+.+-+..++.+..++.+.. ..++..|++..+|+++|+. +|++
T Consensus 47 ~~i~~~k~vvv~F~a~wC~~C~~-~~~-~l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~~ 118 (139)
T PRK10996 47 KLLQDDLPVVIDFWAPWCGPCRN-FAP-IF--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQV 118 (139)
T ss_pred HHHhCCCeEEEEEECCCCHHHHH-HHH-HH--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCEE
Confidence 34467899999999999999998 643 33 335555566788888777653 4688999999999998886 6999
Q ss_pred eEEEecCCChHHHHHHHHhh
Q 013325 255 MRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~~ 274 (445)
+..+.|..+.+.|...|.+.
T Consensus 119 v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 119 VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEcCCCCHHHHHHHHHHh
Confidence 99999998888888777654
No 36
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.26 E-value=1.2e-05 Score=65.74 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=74.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
-+|++.+.. .+++++|+++.++|..|+. |...+ ..+.+....++.++.+|.+ +...+++.|++..+|++.+
T Consensus 7 ~~f~~~i~~---~~~~vvv~f~~~~C~~C~~-~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 7 ENFEKFINE---SDKPVVVYFYAPWCPPCKA-FKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp TTHHHHHTT---TSSEEEEEEESTTSHHHHH-HHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEE
T ss_pred HHHHHHHHc---cCCCEEEEEeCCCCCcccc-cccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEE
Confidence 355555544 5799999999999999999 63221 2334444457888877775 5578999999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
+. .|+.+.++.|..+++.+.+.|.+
T Consensus 78 ~~--~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 78 FK--NGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EE--TTEEEEEEESSSSHHHHHHHHHH
T ss_pred EE--CCcEEEEEECCCCHHHHHHHHHc
Confidence 98 58888899999999998887754
No 37
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.19 E-value=6.7e-06 Score=86.53 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCC--eEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC--hhHHHHHHHcCCCCCcEEE
Q 013325 170 EKAKDAASVQDK--WLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 170 ~eA~~~Ak~~~K--~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s--~eg~~~~~~y~v~~~P~l~ 245 (445)
...++.+..++| |+||+++.+||..|+. +.+.+++++.|..-+. ++|+.+.|+.. ++-..+...|++-..|++.
T Consensus 462 ~~~L~~~la~~~~~pVmlDfyAdWCvtCK~-~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ 539 (569)
T COG4232 462 LAELDQALAEAKAKPVMLDFYADWCVTCKE-NEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYL 539 (569)
T ss_pred HHHHHHHHHhCCCCcEEEeeehhHHHHhHh-hhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEE
Confidence 336677776666 9999999999999999 9999999888887776 89999999854 5557788899999999999
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+.++...+... +.|.++.+.|++.|+++
T Consensus 540 ff~~~g~e~~~-l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 540 FFGPQGSEPEI-LTGFLTADAFLEHLERA 567 (569)
T ss_pred EECCCCCcCcC-CcceecHHHHHHHHHHh
Confidence 99986555444 89999999999998875
No 38
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.15 E-value=3.7e-05 Score=63.80 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=64.7
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
+.+.+++++|+++.+||..|+. +... + ..+.+-... ...|..++.+. ..+++.|++..+|+++++. .|+.
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~-~~p~-l--~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~--~g~~ 83 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKA-VVSL-F--KKIKNELGDDLLHFATAEADT---IDTLKRYRGKCEPTFLFYK--NGEL 83 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHH-HhHH-H--HHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEE--CCEE
Confidence 4457999999999999999998 6432 2 223333332 34566677773 3578999999999988886 6999
Q ss_pred eEEEecCCChHHHHHHHHh
Q 013325 255 MRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~ 273 (445)
+.++.|. +++.+.+.|.+
T Consensus 84 ~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEecC-ChHHHHHHHhh
Confidence 9999995 77777766643
No 39
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.14 E-value=3.2e-05 Score=65.29 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=72.4
Q ss_pred ccCcHHHHHHHHH--HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCC
Q 013325 165 FNGSFEKAKDAAS--VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSI 241 (445)
Q Consensus 165 ~~gs~~eA~~~Ak--~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~ 241 (445)
|.-+.++..+.+. ..++++||+++++||..|+. +... |. ++.+.+.. ++.+..++.+.. ..++..|++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~-~~p~-~~--~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~ 80 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIH-IEPV-WK--EVIQELEPLGVGIATVNAGHE--RRLARKLGAHSV 80 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHH-hhHH-HH--HHHHHHHhcCceEEEEecccc--HHHHHHcCCccC
Confidence 3344555554453 47899999999999999998 6443 22 34444443 577777776643 467899999999
Q ss_pred cEEEEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
|+++|+. .|+.+....|..+.+.+...|.
T Consensus 81 Pt~~i~~--~g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 81 PAIVGII--NGQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred CEEEEEE--CCEEEEEecCCCCHHHHHHHHh
Confidence 9999986 6888888899888877666554
No 40
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.11 E-value=2.3e-05 Score=65.88 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHH-HcCCCCCcEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCT-YYKLDSIPVVL 245 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~-~y~v~~~P~l~ 245 (445)
+|+ ++..+++.+|++||+++.+||..|+. |... | ..+.+.++. ++.+..++.+.. ...++. .|++..||++.
T Consensus 10 ~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~-~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 10 EIE-ALAKGERRNQSTLVVLYAPWCPFCQA-MEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTIL 83 (109)
T ss_pred HHH-HHHhhhhcCCCEEEEEECCCCHHHHH-HhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEE
Confidence 444 56666788999999999999999999 7544 4 346666665 599998888763 234564 69999999999
Q ss_pred EEeCCCCceeEEEecC-CChHHHHH
Q 013325 246 VVDPITGQKMRSWCGM-VQPESLLE 269 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~-~~~~~~l~ 269 (445)
++.+. +..+..+.|. .+.+.|+.
T Consensus 84 ~f~~~-~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 84 FFPKN-SRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred EEcCC-CCCceeccCCCCCHHHHHh
Confidence 99864 3445667784 67777654
No 41
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.2e-05 Score=86.02 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-hhH----HHHHHHcC-CCCCcE
Q 013325 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-SEG----KKVCTYYK-LDSIPV 243 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-~eg----~~~~~~y~-v~~~P~ 243 (445)
++|.+.|++++|||||.|--++|..||+ |.++.+.||+|-.+||++||..++|-.. |+- ..+++... -...|.
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChV-M~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHV-MAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHH-HhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 7899999999999999999999999999 9999999999999999999999887643 322 12333333 367999
Q ss_pred EEEEeCCCCceeEEEe--------cCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQKMRSWC--------GMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~--------G~~~~~~~l~~L~~~~~ 276 (445)
-+|+.| .|+.+..-. |...--++|..|.....
T Consensus 112 tVfLTP-d~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 112 TVFLTP-DGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred eEEECC-CCceeeeeeecCCcccCCCcCHHHHHHHHHHHHH
Confidence 999999 577652211 22233455666655554
No 42
>PHA02278 thioredoxin-like protein
Probab=98.05 E-value=5.9e-05 Score=62.98 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=63.1
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChh--HHHHHHHcCCCCCcEEEEEeCCCC
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSE--GKKVCTYYKLDSIPVVLVVDPITG 252 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~e--g~~~~~~y~v~~~P~l~ii~p~tg 252 (445)
+++++++|+++.+||.+|+. |. |.+.++-.+ ..-++.++++..+ ...++..|++.+.|+++++. +|
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~-m~------p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G 82 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEI-LK------SVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DG 82 (103)
T ss_pred hCCCcEEEEEECCCCHHHHh-HH------HHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CC
Confidence 58999999999999999998 63 334443322 2335666776532 45689999999999999998 59
Q ss_pred ceeEEEecCCChHHHHH
Q 013325 253 QKMRSWCGMVQPESLLE 269 (445)
Q Consensus 253 ~~~~~~~G~~~~~~~l~ 269 (445)
+.+.++.|..+++.+.+
T Consensus 83 ~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQE 99 (103)
T ss_pred EEEEEEeCCCCHHHHHh
Confidence 99999999888776543
No 43
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.05 E-value=4e-05 Score=62.41 Aligned_cols=93 Identities=14% Similarity=0.340 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
.|++++..+. +|+++|+++.+||..|+. |.. +| +.+..-+..++.++.++.+ +...++..|++..+|+++|+
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~-~~~-~l--~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~ 75 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQ-MNQ-VF--EELAKEAFPSVLFLSIEAE--ELPEISEKFEITAVPTFVFF 75 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHH-HhH-HH--HHHHHHhCCceEEEEEccc--cCHHHHHhcCCccccEEEEE
Confidence 4556555554 799999999999999999 644 23 2233333447888877765 34567889999999999999
Q ss_pred eCCCCceeEEEecCCChHHHHHHH
Q 013325 248 DPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
. .|+.+.++.|. .++.+.+.|
T Consensus 76 ~--~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 76 R--NGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred E--CCEEEEEEeCC-CHHHHHHhh
Confidence 6 58889999985 455555443
No 44
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.02 E-value=0.00011 Score=59.74 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=68.3
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeE
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 256 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~ 256 (445)
+..+++++|++++++|..|.. +... | ..+.+-++.++.++.++.+.. ..+++.|++..+|+++++. .|+.+.
T Consensus 11 ~~~~~~vvi~f~~~~C~~C~~-~~~~-l--~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g~~~~ 82 (101)
T TIGR01068 11 ASSDKPVLVDFWAPWCGPCKM-IAPI-L--EELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK--NGKEVD 82 (101)
T ss_pred hhcCCcEEEEEECCCCHHHHH-hCHH-H--HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe--CCcEee
Confidence 345789999999999999998 6432 2 244444455688888787654 3568899999999999995 588888
Q ss_pred EEecCCChHHHHHHHHhh
Q 013325 257 SWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 257 ~~~G~~~~~~~l~~L~~~ 274 (445)
...|..+.+.+...|.+.
T Consensus 83 ~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 83 RSVGALPKAALKQLINKN 100 (101)
T ss_pred eecCCCCHHHHHHHHHhh
Confidence 888988888877777654
No 45
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.02 E-value=4.2e-05 Score=63.69 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=71.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
..+|++.+. +.++++||+++++||..|+. +... | ..+.+-++..+.+..++.+..+...++..|++..+|++.
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~-~~~~-~--~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKN-LKPE-Y--AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHh-hChH-H--HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 345665553 56899999999999999998 6432 2 234444555677777788776677899999999999999
Q ss_pred EEeCCC---CceeEEEecCCChHHHHHHH
Q 013325 246 VVDPIT---GQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 246 ii~p~t---g~~~~~~~G~~~~~~~l~~L 271 (445)
|+.+.. +.....+.|..+.+.+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 998643 13456678888888776543
No 46
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.98 E-value=7.4e-05 Score=63.48 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=72.0
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHH-HHcCCCCCcE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC-TYYKLDSIPV 243 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~-~~y~v~~~P~ 243 (445)
-..+|+++... .++++++||.++.+||..|+. |.. +| +++.+.++....|.++|.+... .++ ..|++.+||+
T Consensus 15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~-l~p-~~--~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PT 87 (113)
T cd03006 15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQA-ARQ-EF--EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPV 87 (113)
T ss_pred chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHH-HHH-HH--HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCE
Confidence 35677776553 788999999999999999998 643 12 3455555667778888876543 456 5899999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHH
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLE 269 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~ 269 (445)
+.++. +|+......|..+++.++.
T Consensus 88 l~lf~--~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 88 IHLYY--RSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEE--CCccceEEeCCCCHHHHHh
Confidence 98884 5776777889888888764
No 47
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.94 E-value=6.3e-05 Score=68.64 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=71.2
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh--H-------------------HHHHHH
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE--G-------------------KKVCTY 235 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e--g-------------------~~~~~~ 235 (445)
...+|+++|++..+||..|+. + .+.+.++.+.++.++.++.+... . ..++..
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~-~------~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~ 132 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRA-E------HPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD 132 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHH-H------HHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence 346899999999999999988 4 24566666667777777764321 1 123456
Q ss_pred cCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 236 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 236 y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|++..+|+.++|++ +|+++.++.|..+.+++.+.|.+++.
T Consensus 133 ~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 133 LGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred cCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence 77788999999996 59999999999999999998888764
No 48
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.93 E-value=0.00011 Score=64.86 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHH---hhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQT---ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~---l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
.|++++..+ .+|+++|.+..+||.+|.. | +|-+.++ +++...|+.+|+|. ...++..|++.+.|.+
T Consensus 13 e~d~~I~~~--~~~lVVvdF~A~WCgpCk~-m------~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~ 81 (142)
T PLN00410 13 AVDQAILAE--EERLVVIRFGHDWDETCMQ-M------DEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTV 81 (142)
T ss_pred HHHHHHHhc--CCCEEEEEEECCCChhHHH-H------HHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcE
Confidence 455665533 7899999999999999998 5 3333333 33345668888874 4589999999977666
Q ss_pred EEEeCCCCc-eeEEEec--------CCChHHHHHHHHhhhhc
Q 013325 245 LVVDPITGQ-KMRSWCG--------MVQPESLLEDLVPFMDG 277 (445)
Q Consensus 245 ~ii~p~tg~-~~~~~~G--------~~~~~~~l~~L~~~~~~ 277 (445)
+++- ++|+ .+.+..| ..+.++|+..+..++..
T Consensus 82 ~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 82 MFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred EEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 6444 2677 7888888 56888999988888753
No 49
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.89 E-value=0.00012 Score=59.76 Aligned_cols=94 Identities=13% Similarity=0.191 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
+|++++ .++++++|++++++|..|+. | ...| +.+.+.+.. ++.+..++. .+...++..|++..+|+++
T Consensus 5 ~~~~~~----~~~~~~~i~f~~~~C~~c~~-~-~~~~--~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 5 NFDDIV----LSNKDVLVEFYAPWCGHCKN-L-APEY--EKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIK 74 (102)
T ss_pred hHHHHh----ccCCcEEEEEECCCCHHHHh-h-ChHH--HHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEE
Confidence 455554 37999999999999999998 6 3344 335555554 466665444 5567788999999999999
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
++++. +. +..+.|..+.+.|...|.+
T Consensus 75 ~~~~~-~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 75 FFPKG-KK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred EecCC-Cc-ceeecCCCCHHHHHHHHHh
Confidence 99952 33 6678898888887766654
No 50
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.88 E-value=0.00014 Score=57.31 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=65.0
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 252 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg 252 (445)
.+.++.+++||++++++|..|+. +.+ .+.++.+ .++.++.++.+. ...++..|++..+|+++++. .|
T Consensus 5 ~~~~~~~~~ll~~~~~~C~~C~~-~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g 73 (93)
T cd02947 5 ELIKSAKPVVVDFWAPWCGPCKA-IAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NG 73 (93)
T ss_pred HHHhcCCcEEEEEECCCChhHHH-hhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CC
Confidence 34445599999999999999988 533 3344433 578888777765 45678899999999999996 57
Q ss_pred ceeEEEecCCChHHHHHHH
Q 013325 253 QKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 253 ~~~~~~~G~~~~~~~l~~L 271 (445)
+.+..+.|..+.+.+...|
T Consensus 74 ~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 74 KEVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEEecCCCHHHHHHHh
Confidence 8888999988877766544
No 51
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00015 Score=60.89 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=71.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
.+++.....+...+|+++|+++++||.+|.. + .|.+.++-.+ +-+|+.+|++. ...+++.|++...|++
T Consensus 8 ~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~-i------~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf 78 (106)
T KOG0907|consen 8 SDLDLVLSAAEAGDKLVVVDFYATWCGPCKA-I------APKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTF 78 (106)
T ss_pred hhHHHHHHHhhCCCCeEEEEEECCCCcchhh-h------hhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEE
Confidence 4667777777777899999999999999998 5 4667666654 47899999988 8889999999999999
Q ss_pred EEEeCCCCceeEEEecCC
Q 013325 245 LVVDPITGQKMRSWCGMV 262 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~ 262 (445)
.++. .|+.+..+.|..
T Consensus 79 ~f~k--~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 79 VFYK--GGEEVDEVVGAN 94 (106)
T ss_pred EEEE--CCEEEEEEecCC
Confidence 9995 689898888853
No 52
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.86 E-value=0.00012 Score=60.87 Aligned_cols=96 Identities=8% Similarity=0.136 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
+|+++...+++ ++++||+++.+||..|+. +.. +|. .+.+-++. ++.+..++.+. ...+++.|++.++|++
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~-~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~ 76 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKK-LEP-VWN--EVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTI 76 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHh-hCh-HHH--HHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEE
Confidence 56677777644 678999999999999998 654 332 34443432 46677666654 3467889999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
.++. .| .+....|..+.+.+...+.+
T Consensus 77 ~l~~--~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 77 KLLK--GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred EEEc--CC-CceeecCCCCHHHHHHHHHh
Confidence 9995 34 44567898888877766654
No 53
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.85 E-value=0.00013 Score=58.80 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=68.1
Q ss_pred HHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh--hccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 172 AKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 172 A~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l--~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
.+..+.+++++++|++++++|..|+. +.. +| ..+.+-+ +.++.+..++.+. ...++..|++..+|+++++.+
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~-~~~-~~--~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKA-LAP-EY--EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHh-hhH-HH--HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcC
Confidence 44556666779999999999999998 643 33 2445556 4678888776654 567899999999999999986
Q ss_pred CCCceeEEEecCCChHHHHH
Q 013325 250 ITGQKMRSWCGMVQPESLLE 269 (445)
Q Consensus 250 ~tg~~~~~~~G~~~~~~~l~ 269 (445)
. |..+.+..|..+++++++
T Consensus 81 ~-~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 81 G-SKEPVKYEGPRTLESLVE 99 (101)
T ss_pred C-CcccccCCCCcCHHHHHh
Confidence 3 366677788778887765
No 54
>PRK09381 trxA thioredoxin; Provisional
Probab=97.85 E-value=0.00024 Score=59.25 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=65.6
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
+.+++++|+++++||..|.. +... | ..+.+-...++.+..++.+.. ..++..|++..+|+++|+. .|+.+.+
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~-~~p~-~--~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~--~G~~~~~ 90 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKM-IAPI-L--DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLFK--NGEVAAT 90 (109)
T ss_pred cCCCeEEEEEECCCCHHHHH-HhHH-H--HHHHHHhCCCcEEEEEECCCC--hhHHHhCCCCcCCEEEEEe--CCeEEEE
Confidence 45889999999999999998 5321 1 123333444567777777654 3467889999999999995 6888889
Q ss_pred EecCCChHHHHHHHHhh
Q 013325 258 WCGMVQPESLLEDLVPF 274 (445)
Q Consensus 258 ~~G~~~~~~~l~~L~~~ 274 (445)
..|..+.+++...|...
T Consensus 91 ~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 91 KVGALSKGQLKEFLDAN 107 (109)
T ss_pred ecCCCCHHHHHHHHHHh
Confidence 99988888776666554
No 55
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.84 E-value=0.00022 Score=58.94 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++.+ ...++++||+++++||..|+. |.. +| ..+.+-+...+.+..+|.+. ...+++.|++..+|++.+
T Consensus 9 ~~f~~~i---~~~~~~v~v~f~a~wC~~C~~-~~p-~~--~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 9 EDFPELV---LNRKEPWLVDFYAPWCGPCQA-LLP-EL--RKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRL 79 (104)
T ss_pred HHHHHHH---hcCCCeEEEEEECCCCHHHHH-HHH-HH--HHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEE
Confidence 3455544 356779999999999999998 632 22 22333334456777777765 456889999999999999
Q ss_pred EeCCCCceeEEEecCCC-hHHHHH
Q 013325 247 VDPITGQKMRSWCGMVQ-PESLLE 269 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~-~~~~l~ 269 (445)
+.. .|+.+..+.|..+ .+++..
T Consensus 80 ~~~-g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 80 YPG-NASKYHSYNGWHRDADSILE 102 (104)
T ss_pred EcC-CCCCceEccCCCCCHHHHHh
Confidence 974 3477888899876 777654
No 56
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.79 E-value=0.00021 Score=58.88 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
+|++.+ ..++++||+++++||..|+. |.. +| ..+.+-++.++.|..++.+.. ..+++.|++..||++.++
T Consensus 10 ~f~~~v----~~~~~~~v~f~a~wC~~C~~-~~p-~~--~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 10 DFDAAV----NSGEIWFVNFYSPRCSHCHD-LAP-TW--REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred hHHHHh----cCCCeEEEEEECCCChHHHH-hHH-HH--HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEE
Confidence 455544 45699999999999999998 643 22 234445566788888888753 568899999999999888
Q ss_pred eCCCCceeEEEecCCChHHHHH
Q 013325 248 DPITGQKMRSWCGMVQPESLLE 269 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~ 269 (445)
. +|+.+..+.|..+.+.+..
T Consensus 80 ~--~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 80 P--SGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred c--CCCCcccCCCCCCHHHHHh
Confidence 4 5777778889888876653
No 57
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.78 E-value=0.00023 Score=59.47 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCChhHHHHHHHcCCCC
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKLDS 240 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s~eg~~~~~~y~v~~ 240 (445)
.+|++++ +.++++||+++++||..|+. |... |. .+.+.+++ ++.+..++.+.. ..++..|++.+
T Consensus 9 ~~f~~~i----~~~~~vlv~F~a~wC~~C~~-~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~ 78 (108)
T cd02996 9 GNIDDIL----QSAELVLVNFYADWCRFSQM-LHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINK 78 (108)
T ss_pred hhHHHHH----hcCCEEEEEEECCCCHHHHh-hHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCc
Confidence 3555543 56789999999999999998 6443 32 22222321 467777777654 46899999999
Q ss_pred CcEEEEEeCCCCc-eeEEEecCCChHHHHHH
Q 013325 241 IPVVLVVDPITGQ-KMRSWCGMVQPESLLED 270 (445)
Q Consensus 241 ~P~l~ii~p~tg~-~~~~~~G~~~~~~~l~~ 270 (445)
||++.++. .|+ ......|..+.+++.+.
T Consensus 79 ~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 79 YPTLKLFR--NGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred CCEEEEEe--CCcCcceecCCCCCHHHHHhh
Confidence 99999885 476 44667788888776653
No 58
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.78 E-value=0.0002 Score=60.85 Aligned_cols=85 Identities=12% Similarity=0.172 Sum_probs=63.8
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
.+++++|+++.+||.+|+. |. |.+.++-.+ ...|+.+|++. -..++..|++.+.|+++++. +|+.+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~-m~------P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk--~G~~v 81 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQ-MD------EVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFF--RNKHM 81 (114)
T ss_pred CCCEEEEEEECCCChhHHH-HH------HHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEE--CCEEE
Confidence 6889999999999999998 63 444444433 34678777765 45789999999999999998 68888
Q ss_pred EEEecCC----------ChHHHHHHHHhh
Q 013325 256 RSWCGMV----------QPESLLEDLVPF 274 (445)
Q Consensus 256 ~~~~G~~----------~~~~~l~~L~~~ 274 (445)
.+..|.. +.++|+..+..+
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 82 KIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 8887732 456676655443
No 59
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.73 E-value=0.00016 Score=59.93 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=61.2
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeE
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 256 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~ 256 (445)
...+|++||+++.+||..|+. +.. +| +.+.+... .+.+..++.+. +...++..|++..||++.+++. | .+.
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~-~~p-~l--~~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~~~ 85 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSAS-FRP-HF--NALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-PRV 85 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHh-HhH-HH--HHHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-cee
Confidence 468999999999999999998 532 12 12333333 46666666542 2346889999999999999984 5 677
Q ss_pred EEecCCChHHHHH
Q 013325 257 SWCGMVQPESLLE 269 (445)
Q Consensus 257 ~~~G~~~~~~~l~ 269 (445)
++.|..+.+.+.+
T Consensus 86 ~~~G~~~~~~l~~ 98 (100)
T cd02999 86 RYNGTRTLDSLAA 98 (100)
T ss_pred EecCCCCHHHHHh
Confidence 8899888887664
No 60
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.72 E-value=0.00011 Score=62.54 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=63.8
Q ss_pred HHHHHHcCCeEEEEEeCCCCcchhhhhhhccc----------------CChhHHHHhhccEEEEEeecCChhHHHHHHHc
Q 013325 173 KDAASVQDKWLLVNLQSTKEFSSHMVLNRDTW----------------ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY 236 (445)
Q Consensus 173 ~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~----------------~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y 236 (445)
+..+...+|+++|++.+++|..|+. +...+- ..+.+..+++++-+-|....+ +...+++.|
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~-~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~ 89 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRF-TSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARW 89 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhh-hChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhC
Confidence 3344456799999999999999998 532211 123444444443333332222 224588899
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHH
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
++..+|++.||++ +| ++.++.|..+++.+.+.+
T Consensus 90 ~i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 90 GVSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred CCCcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence 9999999999996 46 888899999999887653
No 61
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.70 E-value=0.00026 Score=65.40 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=68.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-hh-HH-------------------HHHHHcC
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-SE-GK-------------------KVCTYYK 237 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-~e-g~-------------------~~~~~y~ 237 (445)
.+|+++||+..+||..|.. . .+.+.++-+.++.++.++.+. .+ .. .++..|+
T Consensus 67 ~gk~vvv~FwatwC~~C~~-e------~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRA-E------HQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred CCCEEEEEEECCCCHHHHH-H------HHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 6899999999999999988 4 345566655577777777543 22 22 1344678
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+..+|+.+|||+ +|+++.++.|..+.+++-..+...+..
T Consensus 140 v~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 140 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 889999999996 599999999999888887777777653
No 62
>PTZ00051 thioredoxin; Provisional
Probab=97.67 E-value=0.00055 Score=55.76 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013325 171 KAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 171 eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 248 (445)
+.+....+.+++++|+++.+||..|+. +. +.+.++.++ ++.+..++.+ +...++..|++..+|+++++.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~-~~------~~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKR-IA------PFYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHH-Hh------HHHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe
Confidence 345556678999999999999999998 53 233333332 4666666654 456789999999999987774
Q ss_pred CCCCceeEEEecCCChHH
Q 013325 249 PITGQKMRSWCGMVQPES 266 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~ 266 (445)
.|+++.++.|. .+++
T Consensus 80 --~g~~~~~~~G~-~~~~ 94 (98)
T PTZ00051 80 --NGSVVDTLLGA-NDEA 94 (98)
T ss_pred --CCeEEEEEeCC-CHHH
Confidence 78999999995 4443
No 63
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.66 E-value=0.00055 Score=67.17 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=71.7
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChh---------HHHHHHHcCCCCCcEEE
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSE---------GKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~e---------g~~~~~~y~v~~~P~l~ 245 (445)
+.-.+|+.||++..+||..|+. + .+.+.++-++ ++.+..++++... ...++..|++..+|+++
T Consensus 162 ~~l~~k~~Lv~F~AswCp~C~~-~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~ 234 (271)
T TIGR02740 162 KDLAKKSGLFFFFKSDCPYCHQ-Q------APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF 234 (271)
T ss_pred HHhcCCeEEEEEECCCCccHHH-H------hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence 3446899999999999999998 4 4666666654 4666666765421 13468899999999999
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|+++.+|++.....|.++.++|.+.+.....
T Consensus 235 Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 235 LADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 9998767666666799999999888876644
No 64
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.66 E-value=0.00047 Score=58.37 Aligned_cols=96 Identities=16% Similarity=0.280 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--cc-EEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TN-FIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~-FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..|++++..+ ++|+++|.+..+||.+|.. | +|-+.++-+ .+ .+|+.+|++ |...++..|.+...|+
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~-m------dp~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPt 71 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQ-L------DDILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPS 71 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHH-H------HHHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcE
Confidence 4577888877 8999999999999999998 6 454444444 25 889988886 5667999999999999
Q ss_pred EEEEeCCCCcee---------EEEecCC-ChHHHHHHHHhhh
Q 013325 244 VLVVDPITGQKM---------RSWCGMV-QPESLLEDLVPFM 275 (445)
Q Consensus 244 l~ii~p~tg~~~---------~~~~G~~-~~~~~l~~L~~~~ 275 (445)
.+++- +|+.+ ..|.|.+ +.++|+..+..++
T Consensus 72 fvffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 72 TIFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 99877 35433 2334433 6688888766543
No 65
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.61 E-value=0.00039 Score=56.98 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=63.4
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC-c
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG-Q 253 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg-~ 253 (445)
++.++++||+++++||..|+. |...+ ..+.+.++. ++.+..+|.+.. .++..+++..+|++.++.. ++ .
T Consensus 15 ~~~~~~~~v~f~~~~C~~C~~-~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~-~~~~ 86 (104)
T cd02995 15 LDSDKDVLVEFYAPWCGHCKA-LAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFFPA-GDKS 86 (104)
T ss_pred hCCCCcEEEEEECCCCHHHHH-HhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEEcC-CCcC
Confidence 455789999999999999999 75433 455566654 688988887654 4677888899999999974 22 2
Q ss_pred eeEEEecCCChHHHHHH
Q 013325 254 KMRSWCGMVQPESLLED 270 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~~ 270 (445)
......|..+...|+..
T Consensus 87 ~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 87 NPIKYEGDRTLEDLIKF 103 (104)
T ss_pred CceEccCCcCHHHHHhh
Confidence 45567788787777653
No 66
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.60 E-value=0.0011 Score=56.84 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=70.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcc--hhhhhhhcccCC----hhHHHHh-hccEEEEEeecCChhHHHHHHHcCCC
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFS--SHMVLNRDTWAN----EAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLD 239 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~--~~~~~~rdv~~~----~~V~~~l-~~~FV~~~~~~~s~eg~~~~~~y~v~ 239 (445)
.+|++. -++..++++|++...+|.+ |+. | .-. +.-.+++ .....+..+|++. ...+++.|++.
T Consensus 17 ~nF~~~---v~~~~~~vvv~f~a~wc~p~~Ck~-~----~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~ 86 (120)
T cd03065 17 KNYKQV---LKKYDVLCLLYHEPVESDKEAQKQ-F----QMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLD 86 (120)
T ss_pred hhHHHH---HHhCCceEEEEECCCcCChhhChh-h----cchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCc
Confidence 445544 4566779999999999976 763 2 233 2233344 3468888877764 47899999999
Q ss_pred CCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 240 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 240 ~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
++|++.++. +|+.+. +.|..+.+.+.+.|...+
T Consensus 87 ~iPTl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999987 688877 899999999888887654
No 67
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.60 E-value=0.00047 Score=61.78 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=63.3
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChh-----------HHHHHHHc---CCCCC
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSE-----------GKKVCTYY---KLDSI 241 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~e-----------g~~~~~~y---~v~~~ 241 (445)
....++.|||+..+||..|+. . .|.+.++-++ +|.+..++.+... +......| ++..+
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~-e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i 119 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQ-F------APVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT 119 (153)
T ss_pred hhcCCCEEEEEECCCChhHHH-H------HHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC
Confidence 344566799999999999998 3 4666666554 3555555555321 22223445 78899
Q ss_pred cEEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
|+.+|||+..|.+..+..|.++.+++...+...
T Consensus 120 PTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 120 PATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 999999986555666788999988887776654
No 68
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.59 E-value=0.00084 Score=54.90 Aligned_cols=89 Identities=16% Similarity=0.316 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
+|++++ ..+ ++||+++++||..|+. +... |. .+.+..+. ++.+..++.+.. ..+++.|++..+|++
T Consensus 9 ~f~~~~----~~~-~~lv~f~a~wC~~C~~-~~p~-~~--~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 9 NFDHHI----AEG-NHFVKFFAPWCGHCKR-LAPT-WE--QLAKKFNNENPSVKIAKVDCTQH--RELCSEFQVRGYPTL 77 (102)
T ss_pred HHHHHh----hcC-CEEEEEECCCCHHHHH-hCHH-HH--HHHHHHhccCCcEEEEEEECCCC--hhhHhhcCCCcCCEE
Confidence 455555 233 5999999999999998 6432 21 23333333 678887776543 367889999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHH
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLE 269 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~ 269 (445)
.++. .|..+....|..+.+++..
T Consensus 78 ~~~~--~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 78 LLFK--DGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred EEEe--CCCeeeEeeCCCCHHHHHh
Confidence 9995 4777788899888776543
No 69
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.58 E-value=0.00077 Score=55.34 Aligned_cols=92 Identities=11% Similarity=0.234 Sum_probs=63.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
..+|++++ +++| ||+++.+||..|+. +... |. .+.+..+. ++.+..++.+.. ..++..|++..+|++
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~-~~p~-~~--~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQ-LQPE-WE--EFADWSDDLGINVAKVDVTQE--PGLSGRFFVTALPTI 75 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHH-HhHH-HH--HHHHhhccCCeEEEEEEccCC--HhHHHHcCCcccCEE
Confidence 34566544 3455 69999999999998 6432 22 23333332 577888877653 357889999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
.++. .|++ ....|..+.+++.+.|.
T Consensus 76 ~~~~--~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 76 YHAK--DGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred EEeC--CCCE-EEecCCCCHHHHHHHHh
Confidence 8873 5764 67889888887776554
No 70
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.51 E-value=0.00053 Score=56.21 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
.+..+|+++|++++++|..|+. |... | ..+.+.+. .++.+..++.+.. ...+++.|++..+|++.++.+ .|.
T Consensus 14 ~~~~~~~~~v~f~a~~C~~C~~-~~~~-~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~-~~~ 87 (105)
T cd02998 14 VGDDKKDVLVEFYAPWCGHCKN-LAPE-Y--EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPK-GST 87 (105)
T ss_pred hcCCCCcEEEEEECCCCHHHHh-hChH-H--HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeC-CCC
Confidence 3445789999999999999988 6321 1 22333333 3688887776553 457889999999999999985 345
Q ss_pred eeEEEecCCChHHHHH
Q 013325 254 KMRSWCGMVQPESLLE 269 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~ 269 (445)
....+.|..+.+.+.+
T Consensus 88 ~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 88 EPVKYEGGRDLEDLVK 103 (105)
T ss_pred CccccCCccCHHHHHh
Confidence 5666788877777654
No 71
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.48 E-value=0.00059 Score=57.62 Aligned_cols=70 Identities=13% Similarity=0.300 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
+++++|+++++||..|+. |. +.+.++..+ +..|+.++++.. .+++.|++..+|+++++. .|+.+.+
T Consensus 24 ~~~vvv~F~a~~c~~C~~-l~------~~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f~--~G~~v~~ 91 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKI-LD------SHLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLLVYK--NGELIDN 91 (113)
T ss_pred CCEEEEEEeCCCCCcHHH-HH------HHHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEEEEE--CCEEEEE
Confidence 589999999999999998 63 334444333 355666676543 889999999999999887 5899999
Q ss_pred EecC
Q 013325 258 WCGM 261 (445)
Q Consensus 258 ~~G~ 261 (445)
+.|.
T Consensus 92 ~~G~ 95 (113)
T cd02957 92 IVGF 95 (113)
T ss_pred EecH
Confidence 9884
No 72
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.48 E-value=0.001 Score=63.34 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=75.9
Q ss_pred ccCcHHHHHHHHH-HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 165 FNGSFEKAKDAAS-VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 165 ~~gs~~eA~~~Ak-~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
-..+|++.+.... ...+++||+++.+||..|+. +... | +++.+-++..+.+..+|.+ +...+++.|++..||+
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~-~~P~-~--e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRK-MAPA-W--ERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPT 109 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHH-HHHH-H--HHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCE
Confidence 3457777665543 35688999999999999998 6543 3 4555555656666655544 4567899999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+.++. .|+.+....|..+.+++...+..-+.
T Consensus 110 l~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 110 LLLFD--KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 99998 58877777788888887766655553
No 73
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.46 E-value=0.0016 Score=53.28 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=60.7
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
+.+++++|++++++|..|+. |... | ..+.+-+...+.+..++.+ +...+++.|++..+|++.++.+. ......
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~-~~~~-~--~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~-~~~~~~ 88 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKN-LAPE-W--KKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAG-KNSPQD 88 (103)
T ss_pred cCCCcEEEEEECCCCHHHHH-HhHH-H--HHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCC-Ccceee
Confidence 45778999999999999998 6322 2 2233334445666656654 44568899999999999999843 245566
Q ss_pred EecCCChHHHHHH
Q 013325 258 WCGMVQPESLLED 270 (445)
Q Consensus 258 ~~G~~~~~~~l~~ 270 (445)
+.|..+.+.+...
T Consensus 89 ~~g~~~~~~l~~~ 101 (103)
T cd03001 89 YQGGRTAKAIVSA 101 (103)
T ss_pred cCCCCCHHHHHHH
Confidence 7788888877654
No 74
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.44 E-value=0.0011 Score=59.97 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=65.7
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChh--------------------HHHHH
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSE--------------------GKKVC 233 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~e--------------------g~~~~ 233 (445)
-.+|+++|++.+++|..|.. .. +.+.++. +.++.++.++.+... ...++
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~-~~------~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 131 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEK-EM------PYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVI 131 (173)
T ss_pred cCCCEEEEEEECCcCHHHHH-HH------HHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHH
Confidence 35799999999999999987 32 3333333 334777777765432 24567
Q ss_pred HHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 234 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 234 ~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
+.|++..+|+++||++ +|+++..+.|..+.+++.+.|..
T Consensus 132 ~~~~v~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 132 DAYGVGPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred HHcCCCCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence 8899999999999996 68999999999998888776654
No 75
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.43 E-value=0.0022 Score=55.17 Aligned_cols=93 Identities=9% Similarity=0.151 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCCh---------hHHHHHHHcC
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYK 237 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~---------eg~~~~~~y~ 237 (445)
+.++.. ...+.++..+||+..+||.+|+. | .|.+.++.++ +.-+|.++++.. +-..+...|+
T Consensus 12 t~~~~~-~~i~~~~~~iv~f~~~~Cp~C~~-~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 12 TVVRAL-EALDKKETATFFIGRKTCPYCRK-F------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred CHHHHH-HHHHcCCcEEEEEECCCChhHHH-H------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 344433 33466888999999999999999 5 5777777765 344666677632 3345666666
Q ss_pred CC----CCcEEEEEeCCCCceeEEEecC-CChHHHHHH
Q 013325 238 LD----SIPVVLVVDPITGQKMRSWCGM-VQPESLLED 270 (445)
Q Consensus 238 v~----~~P~l~ii~p~tg~~~~~~~G~-~~~~~~l~~ 270 (445)
+. ..|+++++. .|+.+.++.|. .+.+++...
T Consensus 84 i~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 84 IPTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred CcccCCCCCEEEEEe--CCeEEEEEeCCCCCHHHHHHH
Confidence 54 599999988 69999999994 456665543
No 76
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.41 E-value=0.0018 Score=54.78 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=64.4
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
..+....+.++|+++.+||..|+. +. .+|.. +.+.. ...-+..++.+ +...++..|++.+.|+++|... |.
T Consensus 16 ~~~l~~~~~vvv~f~a~wC~~C~~-~~-~~l~~--la~~~-~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~--g~ 86 (113)
T cd02975 16 FKEMKNPVDLVVFSSKEGCQYCEV-TK-QLLEE--LSELS-DKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQD--GG 86 (113)
T ss_pred HHHhCCCeEEEEEeCCCCCCChHH-HH-HHHHH--HHHhc-CceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeC--Ce
Confidence 344566788999999999999997 53 22211 22211 34556666766 4568999999999999999973 32
Q ss_pred eeE--EEecCCChHHHHHHHHhhhh
Q 013325 254 KMR--SWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 254 ~~~--~~~G~~~~~~~l~~L~~~~~ 276 (445)
... ++.|..+..+|.+.|...++
T Consensus 87 ~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecceEEEEecCchHHHHHHHHHHHh
Confidence 222 57798888888887776654
No 77
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.41 E-value=0.0015 Score=55.41 Aligned_cols=77 Identities=9% Similarity=0.220 Sum_probs=58.5
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCC
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 251 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t 251 (445)
..+.++.++++|+++.+||..|+. |. +.+.++.++ +..|+.+|.+. ...+++.|++..+|+++++. .
T Consensus 16 ~~~i~~~~~vvV~f~a~~c~~C~~-~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk--~ 84 (113)
T cd02989 16 FEIVKSSERVVCHFYHPEFFRCKI-MD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFK--N 84 (113)
T ss_pred HHHHhCCCcEEEEEECCCCccHHH-HH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEE--C
Confidence 333456789999999999999998 53 444444443 46777666654 45689999999999999988 5
Q ss_pred CceeEEEecC
Q 013325 252 GQKMRSWCGM 261 (445)
Q Consensus 252 g~~~~~~~G~ 261 (445)
|+.+.++.|.
T Consensus 85 G~~v~~~~g~ 94 (113)
T cd02989 85 GKTVDRIVGF 94 (113)
T ss_pred CEEEEEEECc
Confidence 8999888874
No 78
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.34 E-value=0.0042 Score=52.45 Aligned_cols=101 Identities=9% Similarity=0.066 Sum_probs=74.1
Q ss_pred HHHHhhcCCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCC--CcchhhhhhhcccCChhHHHHhhc---cEEEEEeecC
Q 013325 151 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDD 225 (445)
Q Consensus 151 ~~l~~~f~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~--~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~ 225 (445)
++|.++-+ +|-.-..+|++-+ +.+..++|.++.+| |.+|.. + .+.+.++.++ .+.|+.++++
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~-i------~P~leela~e~~~~v~f~kVdid 70 (111)
T cd02965 4 ARLQTRHG--WPRVDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLD-V------AVVLPELLKAFPGRFRAAVVGRA 70 (111)
T ss_pred HHHHHhcC--CcccccccHHHHH----hCCCCEEEEecCCcccCcchhh-h------HhHHHHHHHHCCCcEEEEEEECC
Confidence 34554443 3334667888655 66777888888885 999988 5 3455555543 4567777776
Q ss_pred ChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHH
Q 013325 226 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 268 (445)
Q Consensus 226 s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l 268 (445)
... .++..|+|.++|+++++. .|+.+..+.|..+.+++.
T Consensus 71 ~~~--~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 71 DEQ--ALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCH--HHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence 653 899999999999999998 699999999988887765
No 79
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.33 E-value=0.00078 Score=57.75 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc-EEEEEeecCC---------------------hhHHHHH
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN-FIFWQVYDDT---------------------SEGKKVC 233 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~-FV~~~~~~~s---------------------~eg~~~~ 233 (445)
+.-.+|+++|++.+++|..|.. +. +.+.++-+.. +.++.++.+. .....++
T Consensus 21 ~~~~gk~vvv~F~a~~C~~C~~-~~------~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (127)
T cd03010 21 ADLKGKPYLLNVWASWCAPCRE-EH------PVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVG 93 (127)
T ss_pred HHcCCCEEEEEEEcCcCHHHHH-HH------HHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHH
Confidence 4445899999999999999987 43 3344443332 4455444321 1223567
Q ss_pred HHcCCCCCcEEEEEeCCCCceeEEEecCCChHH
Q 013325 234 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPES 266 (445)
Q Consensus 234 ~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~ 266 (445)
..|++..+|+.+||++ +|+++.++.|.++.+.
T Consensus 94 ~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 94 IDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV 125 (127)
T ss_pred HhcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence 7899999999999996 6999999999887664
No 80
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.27 E-value=0.0011 Score=54.47 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=56.9
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCCh--hH------------------
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTS--EG------------------ 229 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~--eg------------------ 229 (445)
..+...+|++||++..++|..|+. + .+.+.++.+ .++.++.++.+.. +.
T Consensus 13 ~~~~~~~k~~ll~f~~~~C~~C~~-~------~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 13 SLSDLKGKVVLVNFWASWCPPCRA-E------MPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred ehHHcCCCEEEEEeecccChhHHH-H------hHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 344445899999999999999987 3 234444433 3567777777652 22
Q ss_pred -HHHHHHcCCCCCcEEEEEeCCCCceeEEEec
Q 013325 230 -KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 230 -~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G 260 (445)
..++..|++..+|.++|+++ +|+++....|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDR-DGRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence 56788899999999999997 5888877665
No 81
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.23 E-value=0.0018 Score=55.80 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=51.2
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCChh----------------------H
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDTSE----------------------G 229 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s~e----------------------g 229 (445)
-.+|++|||+..++|..|+. + .+.+.++.++ ++.++.++.+..+ .
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~-~------~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRA-F------TPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERR 88 (131)
T ss_pred hCCcEEEEEEECCCChHHHH-H------hHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHH
Confidence 46899999999999999998 4 3444443321 4656656655432 1
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
..++..|++..+|+++||++ +|+++.+
T Consensus 89 ~~~~~~~~v~~~P~~~lid~-~G~i~~~ 115 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDA-DGEVVTT 115 (131)
T ss_pred HHHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence 45778899999999999996 5876644
No 82
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.23 E-value=0.0035 Score=57.43 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=56.0
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
+++++|+++.+||..|+. |+ +.+..+..+ +..|+.++++.. .++..|++..+|+++|+- .|+.+.+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~-m~------~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTlllyk--~G~~v~~ 150 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAA-LN------SSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALLVYK--GGELIGN 150 (175)
T ss_pred CcEEEEEEECCCCchHHH-HH------HHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEEEEE--CCEEEEE
Confidence 359999999999999998 64 344444443 477888888753 788999999999999988 5999988
Q ss_pred EecC
Q 013325 258 WCGM 261 (445)
Q Consensus 258 ~~G~ 261 (445)
+.|.
T Consensus 151 ~vG~ 154 (175)
T cd02987 151 FVRV 154 (175)
T ss_pred Eech
Confidence 8875
No 83
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.15 E-value=0.0028 Score=66.43 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=76.4
Q ss_pred HHhhcCCCCcC-cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHH
Q 013325 153 LASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGK 230 (445)
Q Consensus 153 l~~~f~pp~~~-~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~ 230 (445)
..++|-.+..+ +-..+|++.+.. +..++++||+++.+||..|+. |... | +++.+-+.. .+.|..++++..+..
T Consensus 344 ~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~-m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~ 418 (463)
T TIGR00424 344 VADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQA-MEAS-Y--LELAEKLAGSGVKVAKFRADGDQKE 418 (463)
T ss_pred cccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHH-HHHH-H--HHHHHHhccCCcEEEEEECCCCccH
Confidence 45788444322 334567776643 678999999999999999999 7543 2 444444443 366777787765433
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCceeEEEe-cCCChHHHHHHHH
Q 013325 231 KVCTYYKLDSIPVVLVVDPITGQKMRSWC-GMVQPESLLEDLV 272 (445)
Q Consensus 231 ~~~~~y~v~~~P~l~ii~p~tg~~~~~~~-G~~~~~~~l~~L~ 272 (445)
..++.|++..||++.|+.... ....... |.-+.+.|+..+.
T Consensus 419 ~~~~~~~I~~~PTii~Fk~g~-~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 419 FAKQELQLGSFPTILFFPKHS-SRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred HHHHHcCCCccceEEEEECCC-CCceeCCCCCCCHHHHHHHHH
Confidence 445789999999999998532 2223454 4678888776554
No 84
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.12 E-value=0.0028 Score=51.95 Aligned_cols=89 Identities=22% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCC--CCcEEEEEeCCCCceeEE
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tg~~~~~ 257 (445)
+++++|.+.+++|..|.. +.. .+ ..|.+-.+..+.|..+|. .+...++..|++. .+|+++++...+|.+...
T Consensus 12 ~~~~~~~f~~~~~~~~~~-~~~-~~--~~vA~~~~~~v~f~~vd~--~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~ 85 (103)
T cd02982 12 GKPLLVLFYNKDDSESEE-LRE-RF--KEVAKKFKGKLLFVVVDA--DDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLM 85 (103)
T ss_pred CCCEEEEEEcCChhhHHH-HHH-HH--HHHHHHhCCeEEEEEEch--HhhHHHHHHcCCChhhCCEEEEEecccccccCC
Confidence 789999999999999988 532 11 234444445666664444 5566799999998 999999999765666555
Q ss_pred EecCCChHHHHHHHHhh
Q 013325 258 WCGMVQPESLLEDLVPF 274 (445)
Q Consensus 258 ~~G~~~~~~~l~~L~~~ 274 (445)
..|..+.+.+.+.|..+
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 45555777766655543
No 85
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.07 E-value=0.0034 Score=65.55 Aligned_cols=92 Identities=11% Similarity=0.213 Sum_probs=68.7
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
.+++++++|+++++||..|+. +... | ..+.+.++. ++.+..++.+. ...++..|++..||++.++. .|+
T Consensus 15 i~~~~~~~v~f~a~wC~~c~~-~~~~-~--~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~--~g~ 86 (462)
T TIGR01130 15 IKSHEFVLVEFYAPWCGHCKS-LAPE-Y--EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTLKIFR--NGE 86 (462)
T ss_pred HhcCCCEEEEEECCCCHHHHh-hhHH-H--HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEEEEEe--CCc
Confidence 356889999999999999998 6433 2 234444442 36777666643 46789999999999999986 466
Q ss_pred e-eEEEecCCChHHHHHHHHhhhh
Q 013325 254 K-MRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 254 ~-~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
. +....|..+.+.|...+...+.
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHhcC
Confidence 5 6778898888888877776654
No 86
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.05 E-value=0.0067 Score=58.84 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=75.9
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCCh--hH-------HHHHHHcCCCCCcEEEEEe
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTS--EG-------KKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~--eg-------~~~~~~y~v~~~P~l~ii~ 248 (445)
.++|-||+++...|..|+. | .+.|+.|-+. +|-++.+++|.. .+ ...++.+++..+|.+++|+
T Consensus 149 a~~~gL~fFy~~~C~~C~~-~------apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQK-M------APVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred HhceeEEEEECCCCchhHH-H------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 3569999999999999999 5 4667777665 577777777754 11 3467789999999999999
Q ss_pred CCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 249 PITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
|.|++..-.-.|.++.++|++.+..+...+
T Consensus 222 ~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 222 PKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 999987777789999999999999888766
No 87
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.00 E-value=0.0059 Score=54.63 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhHHHHHHHcCCCC---
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDS--- 240 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg~~~~~~y~v~~--- 240 (445)
.|++.+. ...+++++|+++.+||..|+. +. +.+.++.+ .++.|..+|.+.. ..+++.|++..
T Consensus 37 ~f~~~l~--~~~~~~vvV~Fya~wC~~Ck~-l~------p~l~~la~~~~~~~v~f~~VDvd~~--~~la~~~~V~~~~~ 105 (152)
T cd02962 37 TLEEELE--RDKRVTWLVEFFTTWSPECVN-FA------PVFAELSLKYNNNNLKFGKIDIGRF--PNVAEKFRVSTSPL 105 (152)
T ss_pred HHHHHHH--hcCCCEEEEEEECCCCHHHHH-HH------HHHHHHHHHcccCCeEEEEEECCCC--HHHHHHcCceecCC
Confidence 4554443 235689999999999999998 53 33444433 3588888887664 36788899877
Q ss_pred ---CcEEEEEeCCCCceeEEEec
Q 013325 241 ---IPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 241 ---~P~l~ii~p~tg~~~~~~~G 260 (445)
+|++.++. .|+.+.++.|
T Consensus 106 v~~~PT~ilf~--~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQ--GGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEE--CCEEEEEEec
Confidence 99998887 6998888886
No 88
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=97.00 E-value=0.0006 Score=49.32 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=36.0
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
++|.+|+.. ||.+.+=|..+|+.+|||++.|+..|......
T Consensus 2 ~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 2 EMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp HHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 489999999 99999999999999999999999999987554
No 89
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=96.99 E-value=0.0014 Score=49.45 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=39.6
Q ss_pred CChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 5 l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
++..| ..+|..|+.. ||.+.+=++.+|+.+|||++.|+..|-+-.
T Consensus 8 ~~~~q-~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk 52 (63)
T smart00804 8 LSPEQ-QEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTELK 52 (63)
T ss_pred CCHHH-HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44445 5599999999 999999999999999999999999999844
No 90
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.99 E-value=0.0042 Score=66.07 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=61.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeec--------------------------CChh
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYD--------------------------DTSE 228 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~--------------------------~s~e 228 (445)
.+|++||++..+||..|.. . -+.+.++-+ ..+.++.+.. ....
T Consensus 55 kGKpVvV~FWATWCppCk~-e------mP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~ 127 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLS-E------LGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN 127 (521)
T ss_pred CCCEEEEEEEcCCCHHHHH-H------HHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc
Confidence 6899999999999999988 4 233333322 1233332221 1112
Q ss_pred HHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 229 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 229 g~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
...++..|++..+|+++||++ .|+++..+.|.++.+++...|.
T Consensus 128 ~~~lak~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 128 GGTLAQSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cHHHHHHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence 345778899999999999996 6999999999999888877666
No 91
>PTZ00102 disulphide isomerase; Provisional
Probab=96.99 E-value=0.0033 Score=66.30 Aligned_cols=97 Identities=10% Similarity=0.218 Sum_probs=71.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
.+|++++ ++++.+||+++++||..|+. |...+ . .+...++ .++.+..++.+ +...++..|++..||+
T Consensus 40 ~~f~~~i----~~~~~~lv~f~a~wC~~Ck~-~~p~~-~--~~a~~~~~~~~~i~~~~vd~~--~~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 40 STFDKFI----TENEIVLVKFYAPWCGHCKR-LAPEY-K--KAAKMLKEKKSEIVLASVDAT--EEMELAQEFGVRGYPT 109 (477)
T ss_pred hhHHHHH----hcCCcEEEEEECCCCHHHHH-hhHHH-H--HHHHHHHhcCCcEEEEEEECC--CCHHHHHhcCCCcccE
Confidence 3455544 56789999999999999998 65442 1 2333333 24777766654 4567899999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+.++.. |..+ ...|..+++.|...|.+.+.
T Consensus 110 ~~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 110 IKFFNK--GNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEEEC--CceE-EecCCCCHHHHHHHHHHhhC
Confidence 999984 5555 78898999999888887765
No 92
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.91 E-value=0.007 Score=51.28 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
.+|++.+. +.+++++|+++++||..|+. |.. +|. .+.+.+++ .+.+..++.+......+++.|++..||+
T Consensus 9 ~~f~~~i~---~~~~~vvV~f~a~wC~~C~~-~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 9 ASFNSALL---GSPSAWLVEFYASWCGHCRA-FAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred HhHHHHHh---cCCCeEEEEEECCCCHHHHH-HhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 34555554 44589999999999999998 744 342 34444443 2555666665556678899999999999
Q ss_pred EEEEeCC
Q 013325 244 VLVVDPI 250 (445)
Q Consensus 244 l~ii~p~ 250 (445)
+.++.+.
T Consensus 82 ~~lf~~~ 88 (114)
T cd02992 82 LRYFPPF 88 (114)
T ss_pred EEEECCC
Confidence 9999754
No 93
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.89 E-value=0.0072 Score=58.28 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=73.8
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChh---------HHHHHHHcCCCCCcEEEEEeC
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSE---------GKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~e---------g~~~~~~y~v~~~P~l~ii~p 249 (445)
++|-||+++..+|..|+. | .+-|+.|-+. +|-++.+++|..- ....+..+++..+|.+++|+|
T Consensus 143 ~~~GL~fFy~s~Cp~C~~-~------aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~ 215 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQ-L------AQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDP 215 (248)
T ss_pred hcceEEEEECCCCchhHH-H------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEEC
Confidence 469999999999999999 5 5777777765 6888878876411 122446889999999999999
Q ss_pred CCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 250 ITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 250 ~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.|++..-.-.|.++.++|.+.+..+...+
T Consensus 216 ~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 216 KSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred CCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 99987777789999999999998887655
No 94
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.86 E-value=0.0056 Score=52.98 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh---hc---cEEEEEeecCCh-----------------
Q 013325 171 KAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI---ST---NFIFWQVYDDTS----------------- 227 (445)
Q Consensus 171 eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~~---~FV~~~~~~~s~----------------- 227 (445)
+-+..+.-.+|++||++..+||..|+. + .+.+.++. .. ++.++.++.+..
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~-~------~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRA-F------TPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHH-H------HHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 344455557899999999999999987 4 23343332 22 344444454432
Q ss_pred ------hHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 228 ------EGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 228 ------eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
....+++.|++..+|+++||++ +|+++.+
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~ 115 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT 115 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence 1245677899999999999995 5876644
No 95
>PLN02309 5'-adenylylsulfate reductase
Probab=96.85 E-value=0.0084 Score=62.90 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=63.8
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhHHHHHH-HcCCCCCcEEEEEeCCCCce
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGKKVCT-YYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg~~~~~-~y~v~~~P~l~ii~p~tg~~ 254 (445)
...+|++||+++.+||..|+. |... | +.+.+-+. .++.|..++.+..+ ..++. .|++..||+|.|+.+.+...
T Consensus 362 ~~~~k~vlV~FyApWC~~Cq~-m~p~-~--e~LA~~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~PTil~f~~g~~~~ 436 (457)
T PLN02309 362 ENRKEPWLVVLYAPWCPFCQA-MEAS-Y--EELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGSFPTILLFPKNSSRP 436 (457)
T ss_pred hcCCCeEEEEEECCCChHHHH-HHHH-H--HHHHHHhccCCeEEEEEECCCcc-hHHHHhhCCCceeeEEEEEeCCCCCe
Confidence 478999999999999999998 7543 2 23444443 35899988887332 34564 69999999999997543333
Q ss_pred eEEEe-cCCChHHHHHHHHh
Q 013325 255 MRSWC-GMVQPESLLEDLVP 273 (445)
Q Consensus 255 ~~~~~-G~~~~~~~l~~L~~ 273 (445)
+ ... |.-+.+.|+..+..
T Consensus 437 v-~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 437 I-KYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred e-ecCCCCcCHHHHHHHHHH
Confidence 3 344 45688877766654
No 96
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.83 E-value=0.008 Score=51.52 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=49.9
Q ss_pred cCCeEEEEEeC-------CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChh-----HHHHHHHcCCC-CCc
Q 013325 179 QDKWLLVNLQS-------TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSE-----GKKVCTYYKLD-SIP 242 (445)
Q Consensus 179 ~~K~LlV~l~~-------~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~e-----g~~~~~~y~v~-~~P 242 (445)
.+++++|+++. +||.+|.. + .+.|.++..+ +..|+.++++... ...++..|++. .+|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~-~------~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iP 92 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVK-A------EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVP 92 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHh-h------chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCC
Confidence 47999999999 99999998 4 4556565543 6788888987632 46788899998 999
Q ss_pred EEEEEe
Q 013325 243 VVLVVD 248 (445)
Q Consensus 243 ~l~ii~ 248 (445)
+++++.
T Consensus 93 T~~~~~ 98 (119)
T cd02952 93 TLLRWK 98 (119)
T ss_pred EEEEEc
Confidence 999995
No 97
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.81 E-value=0.0042 Score=55.19 Aligned_cols=72 Identities=14% Similarity=0.312 Sum_probs=48.7
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh---hc--------cEEEEEeecCCh-------------------
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI---ST--------NFIFWQVYDDTS------------------- 227 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~~--------~FV~~~~~~~s~------------------- 227 (445)
=++|+++||+..+||.+|.. +. |.+.++- ++ +|.++.++.+..
T Consensus 23 ~kgk~vlL~FwAsWCppCr~-e~------P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQL-FA------PKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred hCCCEEEEEEECCCChhHHH-HH------HHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 35799999999999999988 43 2222221 11 244444443322
Q ss_pred ----hHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 228 ----EGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 228 ----eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
.+..++..|++..+|+++||++ +|+++.+
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~-~G~Vv~~ 128 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKP-DGDVLAA 128 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence 2335777899999999999997 4888765
No 98
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.74 E-value=0.013 Score=55.43 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=68.7
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCCh---------hHHHHHHHcCCCCCcEEEEEe
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~---------eg~~~~~~y~v~~~P~l~ii~ 248 (445)
.++|-||++..++|..|+. + .+-|..+-++ +|-++.+++|.. .....+..+++..+|.+++|+
T Consensus 119 a~~~gL~~F~~~~C~~C~~-~------~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQ-Q------APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVN 191 (215)
T ss_pred hhCeEEEEEEcCCCchhHH-H------HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEE
Confidence 4799999999999999998 5 4666777665 577777777631 124467789999999999999
Q ss_pred CCCCceeEEEecCCChHHHHHHH
Q 013325 249 PITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
|.+++..-.-.|.++.++|+..+
T Consensus 192 ~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 192 PNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCCeEEEEeeecCCHHHHHHhh
Confidence 98888777778999999998765
No 99
>PTZ00062 glutaredoxin; Provisional
Probab=96.64 E-value=0.021 Score=53.67 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 169 ~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.++--+..+.....+++|++.+||.+|.. | ++.+.++..+ ++.|+.++.+ |.+...|++++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~-m------~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~ 68 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQ-L------MDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEF 68 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHH-H------HHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEE
Confidence 33333333433467899999999999998 6 2444444443 6888888776 99999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+. +|+.+.++.|. ++.++...|....
T Consensus 69 ~~--~g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 69 YQ--NSQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred EE--CCEEEeeeeCC-CHHHHHHHHHHHc
Confidence 97 68999999985 4666665554443
No 100
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.64 E-value=0.016 Score=53.22 Aligned_cols=86 Identities=10% Similarity=0.117 Sum_probs=65.7
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCCh-----------hHHHHHHHcCC--CCCcEEEEEeC
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTS-----------EGKKVCTYYKL--DSIPVVLVVDP 249 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~-----------eg~~~~~~y~v--~~~P~l~ii~p 249 (445)
||++..+||..|+. ..+.++++-++ .|.++.++.+.. .+..+...|++ ..+|+.+||++
T Consensus 73 lV~FwaswCp~C~~-------e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQ-------FDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred EEEEECCCCHhHHH-------HHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC
Confidence 77899999999998 35677777665 688887776633 23446678884 68999999997
Q ss_pred CCCcee-EEEecCCChHHHHHHHHhhhhc
Q 013325 250 ITGQKM-RSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 250 ~tg~~~-~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
.|.++ ....|.++.+++...+...+..
T Consensus 146 -~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 146 -NTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred -CCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 46664 5789999999998888887765
No 101
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=96.63 E-value=0.013 Score=45.40 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=55.6
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
+|.||..+|+.+..++..++||..|.+.+.... +.+....+|+ |..+. + +.+.||.++|+. +++|.+.+
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~--~~g~~--L--~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLI--YSGKQ--M--NDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEE--ECCeE--c--cCCCCHHHcCCCCCCEEEEEE
Confidence 689999999999999999999999999998764 6667778888 44654 4 456899999998 45665543
No 102
>PTZ00102 disulphide isomerase; Provisional
Probab=96.59 E-value=0.0083 Score=63.25 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=72.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..+|++++ .+.+|++||+++++||..|+. |. .+|. .+..... .++++..++.+..+ ..+..|++..+|+
T Consensus 364 ~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~-~~-p~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt 434 (477)
T PTZ00102 364 GNTFEEIV---FKSDKDVLLEIYAPWCGHCKN-LE-PVYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPT 434 (477)
T ss_pred ccchHHHH---hcCCCCEEEEEECCCCHHHHH-HH-HHHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCe
Confidence 34566543 577899999999999999998 63 2333 2222333 35777777765433 3577899999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+.++.+ ++++...+.|..+.+.+...|......
T Consensus 435 ~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 435 ILFVKA-GERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEEEC-CCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 999985 345545788999999888777776543
No 103
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.57 E-value=0.0052 Score=41.26 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.5
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
+.|++++++ |.+.+.|+..|..++||++.|++..|+
T Consensus 3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 478899998 899999999999999999999987763
No 104
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.56 E-value=0.0043 Score=41.61 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~ 46 (445)
++.|.+.+++ |.+.+.|+..|.+||||++.|++.
T Consensus 3 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 3 EEKVQQLMEM--GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 4588999999 999999999999999999999974
No 105
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.55 E-value=0.012 Score=68.27 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=69.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc----cEEEEEeec---CC---hh-------------------H
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST----NFIFWQVYD---DT---SE-------------------G 229 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~----~FV~~~~~~---~s---~e-------------------g 229 (445)
.+|++||++..+||..|.. ..|.+.++-++ +|+++++.. +. .+ .
T Consensus 419 kGK~vll~FWAsWC~pC~~-------e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~ 491 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMH-------VLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD 491 (1057)
T ss_pred CCCEEEEEEECCcChhHHh-------HhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc
Confidence 5899999999999999987 34666555543 488887742 11 11 1
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
..+...|++..+|+++||++ +|+++.++.|....+.+...|...+..|
T Consensus 492 ~~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 492 MYLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred hHHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 24567889999999999996 5999999999888888888887777644
No 106
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.55 E-value=0.014 Score=47.16 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=42.6
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCCh-----------------------hHHHHHH
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTS-----------------------EGKKVCT 234 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~-----------------------eg~~~~~ 234 (445)
||+++||+.+++|..|.. +...+ .++.+-++ .++.+..++.+.. ....+.+
T Consensus 1 gK~~ll~fwa~~c~~c~~-~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKK-ELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLK 76 (95)
T ss_dssp TSEEEEEEE-TTSHHHHH-HHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHH
Confidence 689999999999999987 43221 11223333 4555554444432 1245667
Q ss_pred HcCCCCCcEEEEEeCCCCc
Q 013325 235 YYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 235 ~y~v~~~P~l~ii~p~tg~ 253 (445)
.|++..+|+++||++ +|+
T Consensus 77 ~~~i~~iP~~~lld~-~G~ 94 (95)
T PF13905_consen 77 KYGINGIPTLVLLDP-DGK 94 (95)
T ss_dssp HTT-TSSSEEEEEET-TSB
T ss_pred HCCCCcCCEEEEECC-CCC
Confidence 889999999999996 565
No 107
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.52 E-value=0.024 Score=44.21 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=56.6
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
.+|.||-..|+.+...+..++||.+|.+-|.... +.....-+|+ |.++. | +.++||++.|+. +++|.+-|
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi--~~Gk~--L--~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLK--KWYTI--F--KDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEE--eCCcC--C--CCCCCHHHcCCCCCCEEEEEe
Confidence 6789999999999999999999999999998764 6677777887 45654 4 446899999998 56676654
No 108
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.48 E-value=0.0056 Score=40.87 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=31.6
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (445)
+.|++++++ |-+.+.|+..|..++||++.|++..|
T Consensus 3 ~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 478899999 89999999999999999999998654
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.47 E-value=0.024 Score=53.03 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=61.8
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeec--------CC-hhHHHHHHHcCCCCCc--
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYD--------DT-SEGKKVCTYYKLDSIP-- 242 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~--------~s-~eg~~~~~~y~v~~~P-- 242 (445)
-.+|++||++..+||..|.. .-+.+.++.+ ..+.+++++. ++ .+...++..+++ .||
T Consensus 37 ~kGkvvlv~fwAswC~~C~~-------e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpvl 108 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKK-------HVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNFF 108 (199)
T ss_pred hCCCEEEEEEECCCCCChHH-------HHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC-Cceee
Confidence 35899999999999999975 1244444433 3588888764 22 345556655543 122
Q ss_pred --------------------------------------EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 243 --------------------------------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 243 --------------------------------------~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+.+||| +.|+++.++.|..+++++...|...+.
T Consensus 109 ~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID-~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 109 EPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVN-KSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred eeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEEC-CCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 466888 479999998898888888777777765
No 110
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.45 E-value=0.016 Score=49.59 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=53.3
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeec------CChhH--------------
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYD------DTSEG-------------- 229 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~------~s~eg-------------- 229 (445)
..+.-.+|+++|++.+++|..|.. . .+.+.++.+ .++.++.+.. ++.+.
T Consensus 17 ~l~~~~gk~vvl~F~a~~C~~C~~-~------~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (126)
T cd03012 17 SLAQLRGKVVLLDFWTYCCINCLH-T------LPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPV 89 (126)
T ss_pred CHHHhCCCEEEEEEECCCCccHHH-H------HHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCE
Confidence 333346899999999999999987 3 344444433 3466666643 12221
Q ss_pred -----HHHHHHcCCCCCcEEEEEeCCCCceeEEEecC
Q 013325 230 -----KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 230 -----~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
..++..|++..+|+.+|||+ .|+++.++.|.
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~-~G~v~~~~~G~ 125 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDP-TGNVRHVHFGE 125 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECC-CCcEEEEEecC
Confidence 22345678888999999996 58988887773
No 111
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.45 E-value=0.022 Score=45.09 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=57.7
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
..|-||..+|+.+...+..++||.+|..-|.... +.+...++|...|.++. | +.+.||.++|+. +++|.+.+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G~~--L--~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSREV--L--QDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCCCC--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 5789999999999999999999999999998764 56778888865566654 4 346799999998 56665544
No 112
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.017 Score=54.98 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=72.4
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
++.-+|.++|.+..+||.+|+. . .|-+.++-+. .+||+.+|+ .+++..+..|+|...|++++.- +|.
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~-I------aP~Fs~lankYp~aVFlkVdV--d~c~~taa~~gV~amPTFiff~--ng~ 85 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKR-I------APIFSDLANKYPGAVFLKVDV--DECRGTAATNGVNAMPTFIFFR--NGV 85 (288)
T ss_pred hccCceEEEEEEEecccchHHh-h------hhHHHHhhhhCcccEEEEEeH--HHhhchhhhcCcccCceEEEEe--cCe
Confidence 4556799999999999999998 3 5777777775 599998777 5677788899999999988876 688
Q ss_pred eeEEEecCCChHHHHHHHHhhhhc
Q 013325 254 KMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
.+.+++|. ++..|-+++..+++.
T Consensus 86 kid~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 86 KIDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred EeeeecCC-CHHHHHHHHHHHhcc
Confidence 99999995 666666666666653
No 113
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.40 E-value=0.037 Score=51.47 Aligned_cols=68 Identities=21% Similarity=0.424 Sum_probs=51.7
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
++|++|+++.+||..|+. |+ +.+..+-.. ...|+.++++. .+..|++..+|+++|+- +|+++.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~-m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTlliyk--~G~~v~~ 167 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRL-LN------QHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTILVYR--NGDIVKQ 167 (192)
T ss_pred CCEEEEEEECCCCchHHH-HH------HHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEEEEEE--CCEEEEE
Confidence 469999999999999999 63 344444433 34566666643 36789999999999997 6999988
Q ss_pred EecC
Q 013325 258 WCGM 261 (445)
Q Consensus 258 ~~G~ 261 (445)
+.|.
T Consensus 168 ivG~ 171 (192)
T cd02988 168 FIGL 171 (192)
T ss_pred EeCc
Confidence 8874
No 114
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.36 E-value=0.0073 Score=47.99 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=42.8
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
..-|+||-|||...+ ....++++..|++-|...+ +.....|.|....++.. .+..+.++||.++||.. ..|.+
T Consensus 4 ~milRvrS~dG~~Ri-e~~~~~t~~~L~~kI~~~l-~~~~~~~~L~~~~~~~~-~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 4 SMILRVRSKDGMKRI-EVSPSSTLSDLKEKISEQL-SIPDSSQSLSKDRNNKE-ELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp --EEEEE-SSEEEEE-EE-TTSBHHHHHHHHHHHS----TTT---BSSGGGGG-CSSS-TT-CCCCT---TT-EEE-
T ss_pred cEEEEEECCCCCEEE-EcCCcccHHHHHHHHHHHc-CCCCcceEEEecCCCCc-ccccCCcCCHHHcCCCCccEEEE
Confidence 456999999997333 5889999999999999876 44556888887765543 34346789999999985 55544
No 115
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.30 E-value=0.026 Score=53.29 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=62.7
Q ss_pred cCCeEEEEEe--CCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 179 QDKWLLVNLQ--STKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 179 ~~K~LlV~l~--~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.++-|+++.. .+||..|+. +. +.+.++... +.-+..++++..+...++..|++..+|+++++. .|+.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~-~~------p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~--~g~~ 89 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKE-TE------QLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILE--EGKD 89 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHH-HH------HHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEe--CCee
Confidence 4555666555 389999998 53 333333222 232334577777889999999999999999988 4777
Q ss_pred eE-EEecCCChHHHHHHHHhhhh
Q 013325 255 MR-SWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 255 ~~-~~~G~~~~~~~l~~L~~~~~ 276 (445)
+. ++.|..+.++|...|...++
T Consensus 90 ~~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 90 GGIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred eEEEEeecCCHHHHHHHHHHHHH
Confidence 64 88998888888777776654
No 116
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.27 E-value=0.033 Score=51.50 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=54.9
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChh------------------HHHHHHHc
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSE------------------GKKVCTYY 236 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~e------------------g~~~~~~y 236 (445)
..+|+++||+.++||..|.. . -+.+.++-++ ++++. ..++.+ ...++..|
T Consensus 72 ~~gk~vvl~F~atwCp~C~~-~------lp~l~~~~~~~~~~vv~I--s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y 142 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDK-L------FPIIKSIARAEETDVVMI--SDGTPAEHRRFLKDHELGGERYVVSAEIGMAF 142 (189)
T ss_pred cCCCEEEEEEECCCChhHHH-H------HHHHHHHHHhcCCcEEEE--eCCCHHHHHHHHHhcCCCcceeechhHHHHhc
Confidence 36799999999999999987 4 2333333322 33433 222211 23456778
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
++..+|+.+|||+ .|+++.+ |.....+-++.|.+.++.
T Consensus 143 ~v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 143 QVGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADRE 180 (189)
T ss_pred cCCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence 8999999999996 5887654 655444445555555543
No 117
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.26 E-value=0.023 Score=43.55 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=55.4
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
.+|-||.++|+.+..++..++||..|..-+.... +.+.....|+. .++. + +.+.||.+.|+. ++.|.+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~~--~g~~--L--~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEV-GIPVEQQRLIY--SGRV--L--KDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEE--CCEE--C--CCcCcHHHCCCCCCCEEEEEe
Confidence 3789999999999999999999999999998764 54556677775 3543 4 446899999998 56777765
No 118
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.024 Score=55.48 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
-+|++.+-++. ..+|+|||+..+||..|.. |. +.+..+.. ..|++-.+|+|.. ..++..+++.++|+
T Consensus 31 anfe~~V~~~S-~~~PVlV~fWap~~~~c~q-L~------p~Lekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPt 100 (304)
T COG3118 31 ANFEQEVIQSS-REVPVLVDFWAPWCGPCKQ-LT------PTLEKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPT 100 (304)
T ss_pred hHHHHHHHHHc-cCCCeEEEecCCCCchHHH-HH------HHHHHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCe
Confidence 35666555443 3479999999999999998 63 44444444 4799998888654 56889999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++.+. .|+.|.-+.|....+.+-..|..++.
T Consensus 101 V~af~--dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 101 VYAFK--DGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEEee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence 97776 59999888887776666555555544
No 119
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.19 E-value=0.05 Score=49.20 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh-hccEEEEEeecCCh--------hH-------------------H
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI-STNFIFWQVYDDTS--------EG-------------------K 230 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l-~~~FV~~~~~~~s~--------eg-------------------~ 230 (445)
.+|++|||+..++|..|.. .-..+ ..+.+-+ +.++.++.+..+.. +. .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~-~~~~l---~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~ 99 (171)
T cd02969 24 DGKALVVMFICNHCPYVKA-IEDRL---NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQ 99 (171)
T ss_pred CCCEEEEEEECCCCccHHH-HHHHH---HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCch
Confidence 6799999999999998865 22111 1222222 24677787776542 11 2
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCceeEEE------e---cCCChHHHHHHHHhhhhcCC
Q 013325 231 KVCTYYKLDSIPVVLVVDPITGQKMRSW------C---GMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 231 ~~~~~y~v~~~P~l~ii~p~tg~~~~~~------~---G~~~~~~~l~~L~~~~~~~~ 279 (445)
.++..|++...|+++|||+ +|+++... . +..+.+++...|...+...+
T Consensus 100 ~~~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 100 EVAKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHHHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 3456788888999999997 68877553 1 12466788888888887654
No 120
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.15 E-value=0.029 Score=43.57 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=56.0
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
+|-||.++|+.+.-....++||.+|.+-+... .+.+.....|+.. ++. | +.+.||.++|+. +++|.+.+
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~-~gi~~~~q~L~~~--G~~--L--~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEH-LNVPEEQQRLLFK--GKA--L--ADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCCHHHCCCCCCCEEEEEE
Confidence 68899999999999999999999999999876 3667778889854 554 4 346999999998 56666553
No 121
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.10 E-value=0.047 Score=47.23 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=52.8
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------HHHHHHcCC
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKVCTYYKL 238 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------~~~~~~y~v 238 (445)
.+|+++|++. +.+|..|.. ....+ +....++-..++.++.+..++.+. ..++..|++
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~-~~~~l--~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 98 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTK-EACDF--RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGV 98 (140)
T ss_pred CCCcEEEEEeCCCCCCchHH-HHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCC
Confidence 4788888887 577887765 32211 011111222345555554444332 245566777
Q ss_pred CCC---------cEEEEEeCCCCceeEEEecCCChHHHHHH
Q 013325 239 DSI---------PVVLVVDPITGQKMRSWCGMVQPESLLED 270 (445)
Q Consensus 239 ~~~---------P~l~ii~p~tg~~~~~~~G~~~~~~~l~~ 270 (445)
..+ |+.+|||+ +|+++.++.|......+-+.
T Consensus 99 ~~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 99 WGEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred ccccccccCCcceeEEEECC-CCEEEEEEecCCccchHHHH
Confidence 666 89999996 69999999998765555443
No 122
>PHA02125 thioredoxin-like protein
Probab=96.05 E-value=0.029 Score=43.68 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=49.8
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecC-C
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-V 262 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~-~ 262 (445)
+|+++.+||..|+. +..- |. + + .|.+..++ ..+...++..|++..+|++. .|+.+..+.|. .
T Consensus 2 iv~f~a~wC~~Ck~-~~~~-l~-----~-~--~~~~~~vd--~~~~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKM-VKPM-LA-----N-V--EYTYVDVD--TDEGVELTAKHHIRSLPTLV-----NTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHH-HHHH-HH-----H-H--hheEEeee--CCCCHHHHHHcCCceeCeEE-----CCEEEEEEeCCCC
Confidence 78999999999998 6442 31 1 1 24555444 45567899999999999986 47788888895 2
Q ss_pred ChHHHHHHH
Q 013325 263 QPESLLEDL 271 (445)
Q Consensus 263 ~~~~~l~~L 271 (445)
+..++.+.|
T Consensus 65 ~~~~l~~~~ 73 (75)
T PHA02125 65 NVAELKEKL 73 (75)
T ss_pred cHHHHHHHh
Confidence 445555544
No 123
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.98 E-value=0.051 Score=45.25 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=40.7
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-hhHHHHHH-----------------HcCCCC
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCT-----------------YYKLDS 240 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-~eg~~~~~-----------------~y~v~~ 240 (445)
++|+++|++.++||..|+. .... + ..+.+.....+.++.+..++ .+...+++ .|++..
T Consensus 20 ~gk~vvl~F~~~wC~~C~~-~~p~-l--~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 95 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKK-LLPV-I--RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK 95 (114)
T ss_pred CCCeEEEEEECCCCcchHh-HhHH-H--HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC
Confidence 5899999999999999987 4322 1 11222223344444443333 23333443 455556
Q ss_pred CcEEEEEeCCCCcee
Q 013325 241 IPVVLVVDPITGQKM 255 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~ 255 (445)
+|+.+|||+ .|+++
T Consensus 96 ~P~~~vid~-~G~v~ 109 (114)
T cd02967 96 LPYAVLLDE-AGVIA 109 (114)
T ss_pred cCeEEEECC-CCeEE
Confidence 677777774 35544
No 124
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.93 E-value=0.059 Score=46.96 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=50.6
Q ss_pred cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 216 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 216 ~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.+.+..++++. ...++..|++.++|+++|+. +|+.+.++.|..+.+++++.|..++++-
T Consensus 69 ~v~~akVDiD~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 69 TWQVAIADLEQ--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ceEEEEEECCC--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 36677767654 46789999999999999998 6999999999999999999999988753
No 125
>PTZ00044 ubiquitin; Provisional
Probab=95.87 E-value=0.046 Score=42.49 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=55.9
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
.|-||.++|+.++-++..++||..|-.-|.... +.+....+|. |-.+. + +.+.||.+.|+. +++|.+.+
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~--~~g~~--L--~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKE-GIDVKQIRLI--YSGKQ--M--SDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHeEEE--ECCEE--c--cCCCcHHHcCCCCCCEEEEEE
Confidence 578999999999999999999999999998864 6667788888 44654 4 457899999998 56666543
No 126
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.86 E-value=0.067 Score=45.61 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=63.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeC--CCCc---chhhhhhhcccCChhHHHHhhccEEEEEeecCC---hhHHHHHHHcCC
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQS--TKEF---SSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT---SEGKKVCTYYKL 238 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~--~~~f---~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s---~eg~~~~~~y~v 238 (445)
.+|++++ ++++.+||-++. +||. .|.. |....-.. ....++-+++.+. ++-..++..|+|
T Consensus 9 ~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~-LA~e~~~a-------a~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 9 VTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTR-LAESSASA-------TDDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred hhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHH-HHHHHHhh-------cCceEEEEEecccccchhhHHHHHHhCC
Confidence 4555544 677999999999 7776 5665 43221110 1137788888765 556889999999
Q ss_pred C--CCcEEEEEeCCCCc--eeEEEecC-CChHHHHHHHH
Q 013325 239 D--SIPVVLVVDPITGQ--KMRSWCGM-VQPESLLEDLV 272 (445)
Q Consensus 239 ~--~~P~l~ii~p~tg~--~~~~~~G~-~~~~~~l~~L~ 272 (445)
. .||+|.+... |. ......|. .+.+.|+..+.
T Consensus 77 ~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 77 DKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred CcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHHH
Confidence 9 9999988883 42 33456786 88888886554
No 127
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.81 E-value=0.036 Score=42.78 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=52.8
Q ss_pred EEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 370 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 370 I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+.||+++|+.+.-.+..++||.+|...|... .+.+....+|+. -++. | +.+.||.++|+.+ ++|.|
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~-~gi~~~~q~Li~--~G~~--L--~D~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAA-EGVDPCCQRWFF--SGKL--L--TDKTRLQETKIQKDYVVQV 67 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeE--C--CCCCCHHHcCCCCCCEEEE
Confidence 3589999999999999999999999999875 466777788874 3553 4 5579999999984 55544
No 128
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.78 E-value=0.1 Score=40.56 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=52.2
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHh---hccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecC
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
.-+++++|..|+. +. +.+.++. +..+-+..+|.+ +....+..|++..+|++.+ .|+ ..+.|.
T Consensus 4 ~~f~~~~C~~C~~-~~------~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~----~g~--~~~~G~ 68 (82)
T TIGR00411 4 ELFTSPTCPYCPA-AK------RVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI----NGD--VEFIGA 68 (82)
T ss_pred EEEECCCCcchHH-HH------HHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE----CCE--EEEecC
Confidence 3456789999998 42 3333333 334666766764 3446778899999999975 354 268898
Q ss_pred CChHHHHHHHHhh
Q 013325 262 VQPESLLEDLVPF 274 (445)
Q Consensus 262 ~~~~~~l~~L~~~ 274 (445)
.+++++...|..+
T Consensus 69 ~~~~~l~~~l~~~ 81 (82)
T TIGR00411 69 PTKEELVEAIKKR 81 (82)
T ss_pred CCHHHHHHHHHhh
Confidence 8999988877765
No 129
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=95.75 E-value=0.11 Score=41.74 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=57.5
Q ss_pred CCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 364 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
.+..+.|.|+.++|+.+.-+...+++|+.|++-+... .+.+...++|+.. .+. + +.+.|+.++|+.. ++|-|
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~-~gi~~~~~rf~f~--G~~--L--~~~~T~~~l~m~d~d~I~v 80 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-QGLSMNSVRFLFD--GQR--I--RDNQTPDDLGMEDGDEIEV 80 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHH-hCCCccceEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEE
Confidence 4568999999999999999999999999999987765 3556677877775 443 3 4578999999984 55544
No 130
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.74 E-value=0.099 Score=50.22 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 241 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.|+.+|||+ .|+++.++.|.++++++...|...+.
T Consensus 201 ~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 201 NFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 588999995 69999999999999888887777653
No 131
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.58 E-value=0.078 Score=46.34 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=51.5
Q ss_pred HcCCeEEEEEeCC-CCcchhhhhhhcccCChhHHHH---hh-ccEEEEEeecCChh-H------------------HHHH
Q 013325 178 VQDKWLLVNLQST-KEFSSHMVLNRDTWANEAVSQT---IS-TNFIFWQVYDDTSE-G------------------KKVC 233 (445)
Q Consensus 178 ~~~K~LlV~l~~~-~~f~~~~~~~rdv~~~~~V~~~---l~-~~FV~~~~~~~s~e-g------------------~~~~ 233 (445)
-.+|+++|++..+ ||..|.. ..+.+.++ .+ ..+.+..+..+... . ..++
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~-------~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 98 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRK-------ELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA 98 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHH-------HHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH
T ss_pred hCCCeEEEEEEccCCCCcchh-------hhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH
Confidence 3578899999988 9999976 22233333 22 23444444443322 2 3355
Q ss_pred HHcCCC---------CCcEEEEEeCCCCceeEEEecCCC
Q 013325 234 TYYKLD---------SIPVVLVVDPITGQKMRSWCGMVQ 263 (445)
Q Consensus 234 ~~y~v~---------~~P~l~ii~p~tg~~~~~~~G~~~ 263 (445)
..|++. .+|+++||++ .|+++....|..+
T Consensus 99 ~~~~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 99 KALGVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp HHTTCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred HHhCCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 677777 8999999995 7999988888654
No 132
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=95.54 E-value=0.073 Score=41.12 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=54.5
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
.|-||.++|+.+.-.+..++||..|..-|.... +.+.....|. |..+. + +.+.||.++|+. +++|.+.+
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-g~~~~~q~L~--~~g~~--L--~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLI--FAGKQ--L--EDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHh-CCCHHHeEEE--ECCEE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence 588999999999999999999999999998864 5566677787 44553 4 456899999998 46666653
No 133
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.54 E-value=0.056 Score=56.38 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=69.0
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
..+|.+.+ ...++.+||+++.+||..|+. |... | ..+.+.++. ++.+..+|.+..+ +.. |++..+|
T Consensus 353 ~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~-~~p~-~--~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~P 421 (462)
T TIGR01130 353 GKNFDEIV---LDETKDVLVEFYAPWCGHCKN-LAPI-Y--EELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGFP 421 (462)
T ss_pred CcCHHHHh---ccCCCeEEEEEECCCCHhHHH-HHHH-H--HHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCccccC
Confidence 45666654 456899999999999999998 6543 3 445555665 6888888887654 333 8999999
Q ss_pred EEEEEeCCCCc-eeEEEecCCChHHHHHHHHhh
Q 013325 243 VVLVVDPITGQ-KMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 243 ~l~ii~p~tg~-~~~~~~G~~~~~~~l~~L~~~ 274 (445)
++.++.. ++. ....+.|..+.+.++..|.+.
T Consensus 422 t~~~~~~-~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 422 TIKFVPA-GKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred EEEEEeC-CCCcCceEecCcCCHHHHHHHHHhc
Confidence 9999973 233 234567888887777655544
No 134
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.50 E-value=0.091 Score=41.36 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
.+|.||..+|+...-.+..++||.+|..-|.... +......+|+ |.++. |. | + ||+++|+. +++|.+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~--~~Gk~--L~-d-~-~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALL--HRETR--LS-S-G-KLQDLGLGDGSKLTLV 70 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEE--ECCcC--CC-C-C-cHHHcCCCCCCEEEEE
Confidence 4789999999999999999999999999998764 5566677776 55664 53 3 4 89999998 5666553
No 135
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=95.33 E-value=0.023 Score=59.33 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-hhHHH-----HHHHcCCCCCc
Q 013325 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKK-----VCTYYKLDSIP 242 (445)
Q Consensus 169 ~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-~eg~~-----~~~~y~v~~~P 242 (445)
=++|.+.|+.++||+++-+--+.|..|++ |.+.-|.|++...++++|||-..+|-.. ++--+ +...++-...|
T Consensus 101 gqeaf~kar~enkpifLsvgystchwchv-mekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 101 GQEAFNKARAENKPIFLSVGYSTCHWCHV-MEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred hHHHHHHHHhcCCCEEEEcccccchheee-eecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 37899999999999999998888999999 9999999999999999999999765432 33322 22345567899
Q ss_pred EEEEEeCC
Q 013325 243 VVLVVDPI 250 (445)
Q Consensus 243 ~l~ii~p~ 250 (445)
.-+++.|.
T Consensus 180 msV~LTPd 187 (786)
T KOG2244|consen 180 MSVFLTPD 187 (786)
T ss_pred eeEEeCCC
Confidence 99999886
No 136
>PLN02412 probable glutathione peroxidase
Probab=95.32 E-value=0.086 Score=47.74 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=58.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHH----hhccEEEEEeecC--------Ch-hHHHH-HHHcC-------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQT----ISTNFIFWQVYDD--------TS-EGKKV-CTYYK------- 237 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~----l~~~FV~~~~~~~--------s~-eg~~~-~~~y~------- 237 (445)
.+|++||++..++|.+|.. - -+.+.++ -..+|.+++++.+ +. +.... +..++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~-e------~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~ 100 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDS-N------YKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFD 100 (167)
T ss_pred CCCEEEEEEeCCCCCChHH-H------HHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEe
Confidence 5799999999999999974 1 1222222 2235777777653 21 11121 22211
Q ss_pred ---------------------------CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 238 ---------------------------LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 238 ---------------------------v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+...|+.+|||+ .|+++.++.|..+++++...+...++
T Consensus 101 ~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 101 KVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred EEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 222478888996 69999999999999888887777765
No 137
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=95.24 E-value=0.083 Score=40.46 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=53.9
Q ss_pred EEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 370 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 370 I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
|-||.++|+.+.-....+++|..|...+.... +.+.....|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~Li~~--G~~--L--~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQ-GVPPDQLRVIFA--GKE--L--RNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHH-CCCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 45899999999999999999999999998863 566778888754 554 4 456999999998 5666554
No 138
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=95.22 E-value=0.051 Score=45.63 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=48.7
Q ss_pred CceEEEEECCCCce-EEEeeCCCCchHHHHHHHHhhcC-C-----CCCcCeEEEcCCCCCcccCCCCcCCchhhcCC
Q 013325 366 LLCRVGVRLPDGRR-MQRNFLRTDPIQLLWSYCYSQLE-G-----SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 435 (445)
Q Consensus 366 ~~~~I~iRlP~G~r-~~rrF~~~d~l~~l~~fv~~~~~-~-----~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL 435 (445)
..+.|+|||+||+- =-.+|..++||..|..-|....+ + +....-+|+.. +|. | ..++||+++++
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys--GKi--L--eD~~TL~d~~~ 73 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA--GKI--L--ENSKTVGECRS 73 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC--Cee--c--CCCCcHHHhCC
Confidence 46889999999964 56899999999999999987653 2 33445566654 554 4 56799999993
No 139
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=95.18 E-value=0.11 Score=44.00 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=47.6
Q ss_pred ceEEEEECCCCc-eEEEeeCCCCchHHHHHHHHhhcCCC------CCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 367 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGS------EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 367 ~~~I~iRlP~G~-r~~rrF~~~d~l~~l~~fv~~~~~~~------~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
.+.|+|||.||+ +..-+|..++||.+|-++|....+.. .....+|+.. +|. | +.++||+++++.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~--Gri--L--~d~~tL~~~~~~ 72 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA--GRI--L--EDNKTLSDCRLP 72 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET--TEE--E---SSSBTGGGT--
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC--Cee--c--CCcCcHHHhCCC
Confidence 478999999999 99999999999999999999876431 2345677775 442 4 468899999987
No 140
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=95.10 E-value=0.14 Score=39.86 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=52.2
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCC--CCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+|.||.++|+.+.-....++||..|...+.... +. +.....|+. .++. | +.+.||.++|+.+ +.|++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~-~i~~~~~~q~L~~--~G~~--L--~d~~~L~~~~i~~~~~i~~ 71 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEK-GCDYPPEQQKLIY--SGKI--L--KDDTTLEEYKIDEKDFVVV 71 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCCChhHeEEEE--CCEE--c--cCCCCHHHcCCCCCCEEEE
Confidence 588999999999999999999999999998753 43 556667774 4654 5 3468999999985 55544
No 141
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.03 E-value=0.14 Score=45.34 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=50.3
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCC--------h-hHHHHHHH-cC----
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDT--------S-EGKKVCTY-YK---- 237 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s--------~-eg~~~~~~-y~---- 237 (445)
+.-.+|+++|++..+||. |.. - -+.+.++.+ .++.+++++.++ . +...++.. ++
T Consensus 18 ~~~~Gk~vvl~fwatwC~-C~~-e------~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp 89 (152)
T cd00340 18 SKYKGKVLLIVNVASKCG-FTP-Q------YEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFP 89 (152)
T ss_pred HHhCCCEEEEEEEcCCCC-chH-H------HHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCce
Confidence 333589999999999999 865 1 133333322 346666665421 2 22333322 22
Q ss_pred -------------------CCCCc-----------EEEEEeCCCCceeEEEecCCChHHHH
Q 013325 238 -------------------LDSIP-----------VVLVVDPITGQKMRSWCGMVQPESLL 268 (445)
Q Consensus 238 -------------------v~~~P-----------~l~ii~p~tg~~~~~~~G~~~~~~~l 268 (445)
+..+| +.+|||+ .|+++.++.|.++++++.
T Consensus 90 ~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~-~G~i~~~~~G~~~~~~l~ 149 (152)
T cd00340 90 MFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDR-DGEVVKRFAPTTDPEELE 149 (152)
T ss_pred eeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECC-CCcEEEEECCCCCHHHHH
Confidence 12345 6788885 688888888988777654
No 142
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=94.97 E-value=0.14 Score=39.05 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=53.0
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
++|.||.. |+....++..++||..|.+-+... .+.+....+|... .+. + +.+.||.++|+.+ .+|+|.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~~--g~~--l--~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPV-TGVEPRDQKLIFK--GKE--R--DDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHh-hCCChHHeEEeeC--Ccc--c--CccCcHHHcCCCCCCEEEEe
Confidence 47889997 888999999999999999999875 4666777888754 443 4 3478999999984 556553
No 143
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.96 E-value=0.12 Score=40.16 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=54.2
Q ss_pred EEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 370 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 370 I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
|-||.++|+.+.-....++||..|..-|... .+.+...+.|... .+. | ..+.||.+.|+. +++|.+.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~--G~~--L--~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQR-ERVQADQFWLSFE--GRP--M--EDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 5689999999999999999999999999875 4667788889854 554 5 345899999998 56665543
No 144
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=94.83 E-value=0.29 Score=45.23 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=59.8
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEE------EEeecCChh--HH--------------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIF------WQVYDDTSE--GK-------------------- 230 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~------~~~~~~s~e--g~-------------------- 230 (445)
.+|..|||+-..||.+|.. ..|.+..+=..+|-+ .+++.+... ..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~-------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEX-------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred CCCEEEEEEEecCCChhhc-------cchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 3788899999999998886 556565554456777 666665421 11
Q ss_pred -----HHHHHcCCCCCcEE-EEEeCCCCceeEEEecCCChHHHHH
Q 013325 231 -----KVCTYYKLDSIPVV-LVVDPITGQKMRSWCGMVQPESLLE 269 (445)
Q Consensus 231 -----~~~~~y~v~~~P~l-~ii~p~tg~~~~~~~G~~~~~~~l~ 269 (445)
.++..|++..+|.. +|||+ .|+++.+..|.++.+++-.
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH
Confidence 13446778889877 89995 7999999999988876644
No 145
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=94.67 E-value=0.3 Score=44.17 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=50.3
Q ss_pred cCCeEEEEEeCCC-CcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhH---------------------HHHHH
Q 013325 179 QDKWLLVNLQSTK-EFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~-~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg---------------------~~~~~ 234 (445)
.+|+++|++...| |+.|.. - -+.+.++.+ .++.+++++.+++.. ..++.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~-e------~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~ 115 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCAT-S------VRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGK 115 (167)
T ss_pred CCCEEEEEEEcCCCCCccHH-H------HHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence 5789999999887 888866 2 122333322 256666666665432 24455
Q ss_pred HcCCCCCc---------EEEEEeCCCCceeEEEecC-----CChHHHHHHH
Q 013325 235 YYKLDSIP---------VVLVVDPITGQKMRSWCGM-----VQPESLLEDL 271 (445)
Q Consensus 235 ~y~v~~~P---------~l~ii~p~tg~~~~~~~G~-----~~~~~~l~~L 271 (445)
.|++...| +.+|||+ +|.++..+.+. ...++++..|
T Consensus 116 ~~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 116 AYGVAIAEGPLKGLLARAVFVLDE-NNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred HhCCeecccccCCceeeEEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 66665455 7788884 67777666432 2445555444
No 146
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.65 E-value=0.43 Score=44.18 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=59.5
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-----------------------HHHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-----------------------~~~~~ 234 (445)
.+||++|+++ ..+|+.|.. =... + ++...+|-+.++.+++++.++.+. ..+++
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~-el~~-l-~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~ 106 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPT-ELGD-V-ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTR 106 (187)
T ss_pred CCCeEEEEEECCCCCCcCHH-HHHH-H-HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHH
Confidence 5789999998 788998865 2111 1 223333444577888888877543 24567
Q ss_pred HcCC----CCC--cEEEEEeCCCCceeEEEecC----CChHHHHHHHHh
Q 013325 235 YYKL----DSI--PVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 273 (445)
Q Consensus 235 ~y~v----~~~--P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~ 273 (445)
.|++ ..+ |..+|||| .|.+...+... .+.++++..|..
T Consensus 107 ~ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 107 NFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred HcCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 7776 245 99999997 58776665432 367777776643
No 147
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=94.61 E-value=0.34 Score=42.76 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=18.2
Q ss_pred cEEEEEeCCCCceeEEEecCCChHH
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPES 266 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~ 266 (445)
|+.+|||+ .|.++..+.|....+.
T Consensus 121 ~~~~lid~-~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 121 RISFLIDA-DGKIEHVFDKFKTSNH 144 (154)
T ss_pred eEEEEECC-CCEEEEEEcCCCcchh
Confidence 67889996 5899999998754443
No 148
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.44 E-value=0.44 Score=42.19 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=27.8
Q ss_pred CCcE----EEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 240 SIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 240 ~~P~----l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
.+|. .+|||+ .|+++.++.|..+++++...|...
T Consensus 115 ~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 115 KEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence 4776 899995 699999999999998887777654
No 149
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=94.37 E-value=0.18 Score=45.04 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=52.8
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCChhH-----------------------
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDTSEG----------------------- 229 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s~eg----------------------- 229 (445)
..=+||.+.+|+...||.+|.. | ++.=.+|-+.|.++ |-+.-++.|..+.
T Consensus 29 ~~l~gKvV~lyFsA~wC~pCR~-F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~ 104 (157)
T KOG2501|consen 29 EALQGKVVGLYFSAHWCPPCRD-F---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLI 104 (157)
T ss_pred HhhCCcEEEEEEEEEECCchhh-C---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHH
Confidence 3446899999999999999998 6 34444555556666 6554455554333
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
..+...|.+...|.+.+|.| +|..|
T Consensus 105 ~~l~~ky~v~~iP~l~i~~~-dG~~v 129 (157)
T KOG2501|consen 105 QKLSEKYEVKGIPALVILKP-DGTVV 129 (157)
T ss_pred HHHHHhcccCcCceeEEecC-CCCEe
Confidence 34567899999999999998 56543
No 150
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.33 E-value=0.16 Score=39.14 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEECC-CCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCc-eEEE
Q 013325 370 VGVRLP-DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA-MISV 442 (445)
Q Consensus 370 I~iRlP-~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~-~v~v 442 (445)
|-|+++ +|+.+.-....+.||..|...|... .+.+.....|+.. .+. | .|...+|+++|+.+. .|++
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~-~gip~~~q~Li~~--Gk~--L-~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAE-SGIPASQQQLIYN--GRE--L-VDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--c-cCCcccHHHcCCCCCCEEEE
Confidence 457999 9999999999999999999999875 4667777888865 553 4 455689999999854 4444
No 151
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=94.30 E-value=0.23 Score=38.10 Aligned_cols=69 Identities=10% Similarity=0.183 Sum_probs=53.2
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
++|-||.++|+ ..-.+..++||..|..-+.... +.+...++|+. .++. | +.+.||.++|+. +++|.+.+
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~-~i~~~~~~Li~--~Gk~--L--~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKF-KANQEQLVLIF--AGKI--L--KDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHh-CCCHHHEEEEE--CCeE--c--CCCCcHHHcCCCCCCEEEEEE
Confidence 35889999996 5778889999999999998764 55677788864 4654 4 346799999998 57776664
No 152
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=94.29 E-value=0.19 Score=42.22 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=47.7
Q ss_pred cCCeEEEEEeCC-CCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhH-------------------HHHHH
Q 013325 179 QDKWLLVNLQST-KEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEG-------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~-~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg-------------------~~~~~ 234 (445)
.+||++|++... +|..|.. - .+.+.++.+ .++-++.+..++.+. ..++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~-~------l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 96 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQA-E------LPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAK 96 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHH-H------HHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHH
T ss_pred CCCcEEEEEeCccCcccccc-c------hhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHH
Confidence 569999999888 9998877 2 233444432 367777778777653 23455
Q ss_pred HcCCC------CCcEEEEEeCCCCceeE
Q 013325 235 YYKLD------SIPVVLVVDPITGQKMR 256 (445)
Q Consensus 235 ~y~v~------~~P~l~ii~p~tg~~~~ 256 (445)
.|++. .+|.++|||+ .|.++.
T Consensus 97 ~~~~~~~~~~~~~p~~~lid~-~g~I~~ 123 (124)
T PF00578_consen 97 AFGIEDEKDTLALPAVFLIDP-DGKIRY 123 (124)
T ss_dssp HTTCEETTTSEESEEEEEEET-TSBEEE
T ss_pred HcCCccccCCceEeEEEEECC-CCEEEe
Confidence 66665 7899999996 466543
No 153
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=94.27 E-value=0.32 Score=40.55 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=58.9
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
+.-.|-||..+|+.+.-....++||..|...|... .+.+....+|+.. ++. | +.+.||.+.|+. +++|.+.+
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRL-EGIPVAQQHLIWN--NME--L--EDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence 46889999999999999999999999999999875 4667778999854 553 4 456899999998 57776654
No 154
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=94.25 E-value=0.19 Score=38.07 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=51.3
Q ss_pred ECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 373 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 373 RlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
|.++|+.+.-.+..++||.+|-.-|.... +.+.....|+.+ ++. | +.+.||.+.|+.+ ++|.+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~~~~~~~~L~~~--G~~--L--~d~~tL~~~~i~~~~~I~l 64 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEET-GIPPEQQRLIYN--GKE--L--DDDKTLSDYGIKDGSTIHL 64 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHH-TSTGGGEEEEET--TEE--E--STTSBTGGGTTSTTEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhccccc-ccccccceeeee--eec--c--cCcCcHHHcCCCCCCEEEE
Confidence 56899999999999999999999999875 567788888875 443 4 6789999999995 44544
No 155
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.21 E-value=0.24 Score=38.63 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=46.5
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecC
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
|.++++||..|+. + .+.+.+++.+ .+.+..++ ..+ .+..|++.+.|+++| +|+++ +.|.
T Consensus 3 i~~~a~~C~~C~~-~------~~~~~~~~~e~~~~~~~~~v~--~~~---~a~~~~v~~vPti~i----~G~~~--~~G~ 64 (76)
T TIGR00412 3 IQIYGTGCANCQM-T------EKNVKKAVEELGIDAEFEKVT--DMN---EILEAGVTATPGVAV----DGELV--IMGK 64 (76)
T ss_pred EEEECCCCcCHHH-H------HHHHHHHHHHcCCCeEEEEeC--CHH---HHHHcCCCcCCEEEE----CCEEE--EEec
Confidence 6778899999998 4 3455666654 35665444 332 266799999999998 57766 7785
Q ss_pred -CChHHHHHHH
Q 013325 262 -VQPESLLEDL 271 (445)
Q Consensus 262 -~~~~~~l~~L 271 (445)
.+.+++.+.|
T Consensus 65 ~~~~~~l~~~l 75 (76)
T TIGR00412 65 IPSKEEIKEIL 75 (76)
T ss_pred cCCHHHHHHHh
Confidence 3445555443
No 156
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.20 E-value=0.39 Score=45.24 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=57.1
Q ss_pred HHcCCeEEEE-EeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 177 SVQDKWLLVN-LQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 177 k~~~K~LlV~-l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
+...+++.|. +.++||..|.. +. +.+.++..+ +..+..+|.+ +...++..|++.++|++.|.. .|+
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~-~~------~~l~~l~~~~~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~--~~~ 197 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPY-AV------LMAHKFALANDKILGEMIEAN--ENPDLAEKYGVMSVPKIVINK--GVE 197 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHH-HH------HHHHHHHHhcCceEEEEEeCC--CCHHHHHHhCCccCCEEEEec--CCE
Confidence 3456776665 68899999998 53 333444332 4555555554 456788899999999999865 344
Q ss_pred eeEEEecCCChHHHHHHHHh
Q 013325 254 KMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~~L~~ 273 (445)
. +.|..+.++|...|..
T Consensus 198 ~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 E---FVGAYPEEQFLEYILS 214 (215)
T ss_pred E---EECCCCHHHHHHHHHh
Confidence 2 7898888888877764
No 157
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=94.10 E-value=0.39 Score=43.49 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=56.8
Q ss_pred HHHcCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------------
Q 013325 176 ASVQDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG------------------------- 229 (445)
Q Consensus 176 Ak~~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg------------------------- 229 (445)
+.-.+|+++|++. ..+|..|.. -...+ +....+|-+.++.++.++.+..+.
T Consensus 25 ~~~~Gk~vvl~F~~~~~c~~C~~-~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 101 (173)
T cd03015 25 SDYKGKWVVLFFYPLDFTFVCPT-EIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADP 101 (173)
T ss_pred HHhCCCEEEEEEECCCCCCcCHH-HHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECC
Confidence 3346899999998 678998876 32221 111222323467677776665421
Q ss_pred -HHHHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHh
Q 013325 230 -KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 273 (445)
Q Consensus 230 -~~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~ 273 (445)
..+++.|++. ..|+.+|||+ .|.++..+.+.. +.++++..|..
T Consensus 102 ~~~~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 102 KKKISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred chhHHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 1234456653 4789999997 588887776542 44566666644
No 158
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=93.86 E-value=0.35 Score=44.57 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=56.8
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-----------------------HHHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-----------------------~~~~~ 234 (445)
.+||++||++ ..+|+.|.. -...+ ++...+|-+.++.+++++.++.+. ..+++
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~-el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPT-ELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred CCCEEEEEEECCCcCCcCHH-HHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 5899999998 889998876 21111 112223333577777777776432 23456
Q ss_pred HcCCC------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHH
Q 013325 235 YYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLV 272 (445)
Q Consensus 235 ~y~v~------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~ 272 (445)
.|++. ..|+.+|||+ .|.+...+.+. ...++++..|.
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred HhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 67763 3599999996 58877776432 25666666553
No 159
>PRK15000 peroxidase; Provisional
Probab=93.80 E-value=0.41 Score=44.75 Aligned_cols=91 Identities=9% Similarity=0.023 Sum_probs=59.4
Q ss_pred cCCeEEEEEeC-CCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHH--------------------------H
Q 013325 179 QDKWLLVNLQS-TKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------K 231 (445)
Q Consensus 179 ~~K~LlV~l~~-~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~--------------------------~ 231 (445)
.+||++|+++. ++|+.|.. =... -++...+|-+.++.+++++.++.+.. .
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~-El~~--l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ 109 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPS-ELIA--FDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKRE 109 (200)
T ss_pred CCCEEEEEEECCCCCCCCHH-HHHH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcH
Confidence 58999999998 47898876 2111 11223333445788888888875431 2
Q ss_pred HHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHh
Q 013325 232 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 273 (445)
Q Consensus 232 ~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~ 273 (445)
+++.|++. .+|..+|||| .|.+...+.|.. +.++++..|..
T Consensus 110 ia~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 110 IQKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 34556664 5899999997 588777766642 56677766643
No 160
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=93.27 E-value=0.42 Score=36.57 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=50.8
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCC-cCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMIS 441 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~ 441 (445)
.+|.++..+|+.+.-+-..+++++.|++...... +... ..+.|.-. ++. | +.+.|++++||.. ..|-
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~i~~~~~~~l~fd--G~~--L--~~~~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKK-GIPPEESIRLIFD--GKR--L--DPNDTPEDLGIEDGDTID 69 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHH-TTTT-TTEEEEET--TEE--E---TTSCHHHHT-STTEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCccceEEEEEC--CEE--c--CCCCCHHHCCCCCCCEEE
Confidence 4788999999999999999999999999876654 4455 78877764 432 3 6788999999984 4443
No 161
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=92.93 E-value=0.22 Score=34.28 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
+.|.+..++--..+.+.-+..|+.++||+|.||+..++
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46777788877779999999999999999999998875
No 162
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=92.84 E-value=0.38 Score=38.79 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=39.7
Q ss_pred eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCce-EEEE
Q 013325 379 RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISVT 443 (445)
Q Consensus 379 r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-v~v~ 443 (445)
.+++.|.++|||..|-..+...+ .. ...-+|-.-|=...+.+..+...|++||||..+. |+++
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf-~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE 78 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLF-NI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIE 78 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHC-T--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHh-CC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEE
Confidence 68999999999999999988754 33 5556665543322333335678999999999655 4443
No 163
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.55 E-value=0.02 Score=53.68 Aligned_cols=49 Identities=16% Similarity=0.389 Sum_probs=42.1
Q ss_pred CCChhhHHHHHHhhhccccCC-CH-HHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 4 VLSANDKQSMVSSFLEIAVGQ-TA-ETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iTt~~-~~-~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
.++..+++.+|.+|..++..+ .+ ..|+.||++.||+|.+|++.||..+.
T Consensus 17 ~~tt~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 17 PMTTTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCCCCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 456778899999999996555 34 89999999999999999999999765
No 164
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=92.27 E-value=0.86 Score=33.96 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=50.0
Q ss_pred EECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEEe
Q 013325 372 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVTW 444 (445)
Q Consensus 372 iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~~ 444 (445)
||..+|+.+..++..+.||..|...|.... +.+.....|..+ .+. + +.+.||.++|+.+ +.|+|.+
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~-~~~~~~~~l~~~--g~~--l--~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKE-GVPPEQQRLIYA--GKI--L--KDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CcC--C--CCcCCHHHCCCCCCCEEEEEE
Confidence 567789999999999999999999998864 455666777443 443 4 4578999999984 5677655
No 165
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.25 E-value=1.3 Score=35.65 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=50.8
Q ss_pred HHHHcCCeEEE-EEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 175 AASVQDKWLLV-NLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 175 ~Ak~~~K~LlV-~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
.++.-++++=| -+.+++|..|.. . ..++ +.+... +.++-+..++.+ +...++..|++.+.|++++ +|+
T Consensus 6 ~~~~l~~pv~i~~F~~~~C~~C~~-~-~~~~--~~l~~~-~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi----dG~ 74 (89)
T cd03026 6 QIRRLNGPINFETYVSLSCHNCPD-V-VQAL--NLMAVL-NPNIEHEMIDGA--LFQDEVEERGIMSVPAIFL----NGE 74 (89)
T ss_pred HHHhcCCCEEEEEEECCCCCCcHH-H-HHHH--HHHHHH-CCCceEEEEEhH--hCHHHHHHcCCccCCEEEE----CCE
Confidence 34455566444 446688999987 3 3333 233322 224555555554 4456888999999999964 477
Q ss_pred eeEEEecCCChHHHHH
Q 013325 254 KMRSWCGMVQPESLLE 269 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~ 269 (445)
++. .|..+.++++.
T Consensus 75 ~~~--~G~~~~~e~~~ 88 (89)
T cd03026 75 LFG--FGRMTLEEILA 88 (89)
T ss_pred EEE--eCCCCHHHHhh
Confidence 654 48777777654
No 166
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=92.15 E-value=0.43 Score=32.89 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 13 ~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
.|.+.+++=-..+....+..|++++||+|.||+..++.
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45555566566699999999999999999999998764
No 167
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.14 E-value=1.1 Score=41.82 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=55.3
Q ss_pred HcCCeEEEE-EeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------------HH
Q 013325 178 VQDKWLLVN-LQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KK 231 (445)
Q Consensus 178 ~~~K~LlV~-l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------------~~ 231 (445)
-.+||++|+ +-.++|+.|.. =... + .....+|-+.++.+++++.++.+. ..
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~-El~~-l-~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ 101 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTT-EFIA-F-SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKE 101 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHH-HHHH-H-HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChH
Confidence 368888775 56788998875 1111 0 111122223467777777665421 23
Q ss_pred HHHHcCCC------CCcEEEEEeCCCCceeEEEe----cCCChHHHHHHHHhh
Q 013325 232 VCTYYKLD------SIPVVLVVDPITGQKMRSWC----GMVQPESLLEDLVPF 274 (445)
Q Consensus 232 ~~~~y~v~------~~P~l~ii~p~tg~~~~~~~----G~~~~~~~l~~L~~~ 274 (445)
+++.|++. .+|.++||+| .|.+..... +..+.++++..|...
T Consensus 102 ia~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 102 LAREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 45667763 4899999997 477655442 234778887766554
No 168
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.48 Score=50.03 Aligned_cols=97 Identities=11% Similarity=0.206 Sum_probs=68.5
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
..+|++.+ ..+.++||-++.+||.-|+. |-.+.-.. -+.|.+ ..-+-+ +|-++-..+|+.|.+..||
T Consensus 32 ~dnf~~~i----~~~~~vlVeFYAPWCghck~-LaPey~kA---A~~Lke~~s~i~Lak--VDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 32 KDNFKETI----NGHEFVLVEFYAPWCGHCKA-LAPEYEKA---ATELKEEGSPVKLAK--VDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccHHHHh----ccCceEEEEEEchhhhhhhh-hCcHHHHH---HHHhhccCCCceeEE--eecchhhhhHhhhcCCCCC
Confidence 45666554 46788999999999999999 64333222 223444 344444 4445559999999999999
Q ss_pred EEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 243 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
++-|.- +|.......|.-+++.++..|.+-
T Consensus 102 TlkiFr--nG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 102 TLKIFR--NGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred eEEEEe--cCCcceeccCcccHHHHHHHHHhc
Confidence 999887 677666678888888887776653
No 169
>PTZ00256 glutathione peroxidase; Provisional
Probab=92.08 E-value=1.3 Score=40.69 Aligned_cols=38 Identities=18% Similarity=0.506 Sum_probs=28.8
Q ss_pred CCCCcE---EEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 238 LDSIPV---VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 238 v~~~P~---l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+..+|+ .+|||+ .|.++.++.|.++++.+...|...+.
T Consensus 142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 335684 588995 69999999998888887777766653
No 170
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=91.99 E-value=0.62 Score=34.24 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=48.3
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCc
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA 438 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~ 438 (445)
+|.||.++ +....++..+.||..|..-|.... +.+.....|+.+ ++. + +.+.||.++|+.+.
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~-~~~~~~~~L~~~--g~~--L--~d~~tL~~~~i~~~ 63 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELT-GIPVEQQRLIYK--GKV--L--EDDRTLADYNIQDG 63 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CEE--C--CCCCCHHHcCCcCC
Confidence 68899999 578889999999999999998764 445566777754 443 4 33689999999754
No 171
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.92 E-value=0.38 Score=47.31 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=65.7
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccC-ChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeE-
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWA-NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR- 256 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~-~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~- 256 (445)
.+..++|+++.+||.-|++ |..-.-. ...+++-.=+.=|+|+ .++..--..+++.|.+..||++=|+- +|++++
T Consensus 12 s~elvfv~FyAdWCrFSq~-L~piF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfr--nG~~~~r 87 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQM-LKPIFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFR--NGEMMKR 87 (375)
T ss_pred cceEEeeeeehhhchHHHH-HhHHHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeee--ccchhhh
Confidence 3678999999999998988 5322211 1223333334668886 56555556789999999999998886 698876
Q ss_pred EEecCCChHHHHHHHHhhh
Q 013325 257 SWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 257 ~~~G~~~~~~~l~~L~~~~ 275 (445)
-..|.-+.+.|++.+..-+
T Consensus 88 EYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 88 EYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhccchhHHHHHHHHHHHh
Confidence 4678888887777665544
No 172
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.98 Score=46.49 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=70.4
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.....++..+|.+..+||..|+. +-.. |. .+...++. ++..+.++-.+-..+++.|++..||++.++.+- ..
T Consensus 42 ~~~~~~~~~~v~fyapwc~~c~~-l~~~-~~--~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~--~~ 113 (383)
T KOG0191|consen 42 FLLKDDSPWLVEFYAPWCGHCKK-LAPT-YK--KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG--KK 113 (383)
T ss_pred HhhccCCceEEEEECCCCcchhh-hchH-HH--HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC--Cc
Confidence 34566788999999999999999 6433 32 55566666 555568888889999999999999999999974 33
Q ss_pred eEEEecCCChHHHHHHHHhhhh
Q 013325 255 MRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.....|..+.+.+...+...++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 114 PIDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred eeeccCcccHHHHHHHHHHhhc
Confidence 4445676777777766666554
No 173
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=91.57 E-value=1.2 Score=35.11 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=52.3
Q ss_pred EEEEECCCCce-EEE-eeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRR-MQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r-~~r-rF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
+|-||.++|+. +.- -...++||..|..-|... .+.+....+|+.. ++. | +.+.||.+.|+. +++|.+.+
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-~gi~~~~QrLi~~--Gk~--L--~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-FNVEPECQRLFYR--GKQ--M--EDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-hCCCHHHeEEEeC--CEE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 57899999986 344 356899999999999875 4667778889864 553 4 557899999998 56666554
No 174
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=91.32 E-value=1.4 Score=40.93 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=55.7
Q ss_pred cCCeEEEEEeC-CCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH--------------------------HH
Q 013325 179 QDKWLLVNLQS-TKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KK 231 (445)
Q Consensus 179 ~~K~LlV~l~~-~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg--------------------------~~ 231 (445)
.+||++|+++. .+|+.|...+. . + +....+|-..++-+++++.++.+. ..
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~-~-l-~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEII-Q-F-SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHH-H-H-HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 57899999985 56888876221 1 1 222333444577777777776532 24
Q ss_pred HHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHH
Q 013325 232 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV 272 (445)
Q Consensus 232 ~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~ 272 (445)
+++.|++. .+|..+|||| .|.+...+.+.. +.++++..|.
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 56677763 4799999997 487776665533 3445554443
No 175
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.23 E-value=0.07 Score=53.86 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
..+.|++||++ ||.++..|+.||..++||++.|...++...
T Consensus 4 p~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 4 PLDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred chhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhcccc
Confidence 35689999999 999999999999999999999999999864
No 176
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=91.09 E-value=1.1 Score=38.83 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=45.3
Q ss_pred cCCeEEEEEeCCC-CcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhH---------------------HHHHH
Q 013325 179 QDKWLLVNLQSTK-EFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEG---------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~-~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg---------------------~~~~~ 234 (445)
.+|+++|++...+ |..|.. ..+.+.++..+ ++.++.++.++.+. ..++.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~-------e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 97 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCAT-------QTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGK 97 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHH-------HHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHH
Confidence 5789999999877 687876 23344444333 67888888776531 23344
Q ss_pred HcCCCC------CcEEEEEeCCCCceeEEEec
Q 013325 235 YYKLDS------IPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 235 ~y~v~~------~P~l~ii~p~tg~~~~~~~G 260 (445)
.|++.. .|..+||++ .|.++..+-|
T Consensus 98 ~~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~ 128 (143)
T cd03014 98 AYGVLIKDLGLLARAVFVIDE-NGKVIYVELV 128 (143)
T ss_pred HhCCeeccCCccceEEEEEcC-CCeEEEEEEC
Confidence 455421 467777774 4666666654
No 177
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=90.95 E-value=1.9 Score=36.96 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=44.6
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-H-------------------HHHHHcC
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-K-------------------KVCTYYK 237 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-~-------------------~~~~~y~ 237 (445)
.+|+++|++. +.+|..|.. -...+ +....++=..++.++.+..++.+. . .++..|+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~-~~~~l--~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 97 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTT-ELCAF--RDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYG 97 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHH-HHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcC
Confidence 5788888776 678887766 32221 111111212456666666665442 2 2334444
Q ss_pred CCCC---------cEEEEEeCCCCceeEEEecCC
Q 013325 238 LDSI---------PVVLVVDPITGQKMRSWCGMV 262 (445)
Q Consensus 238 v~~~---------P~l~ii~p~tg~~~~~~~G~~ 262 (445)
+... |+++||++ +|+++..+.|..
T Consensus 98 ~~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~ 130 (140)
T cd02971 98 VLIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL 130 (140)
T ss_pred CccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence 4433 36788885 678877777753
No 178
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.90 E-value=0.82 Score=47.01 Aligned_cols=68 Identities=9% Similarity=0.138 Sum_probs=53.5
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcC--CCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE--GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~--~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+|-||..+|+.+.-.+..++||.+|...|..... ++.....+|+.. +|. | +.++||+++|+.. +.|+|
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~--Gki--L--~Dd~tL~dy~I~e~~~Ivv 72 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS--GKI--L--SDDKTVREYKIKEKDFVVV 72 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEE
Confidence 6889999999999999999999999999988642 156677888854 654 4 4568999999985 44443
No 179
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=89.81 E-value=3.7 Score=40.11 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=57.8
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH--------------------------HH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KK 231 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg--------------------------~~ 231 (445)
.+||++++++ .++|+.|.. =...+ ++...+|-+.++.+++++.|+... ..
T Consensus 97 kgk~vVL~FyPa~ftpvCt~-El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ 173 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPS-ELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISRE 173 (261)
T ss_pred CCCeEEEEEECCCCCCCCHH-HHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChH
Confidence 5789999988 688998866 21111 122233334567777777776421 34
Q ss_pred HHHHcCCC-----CCcEEEEEeCCCCceeEEEec----CCChHHHHHHHHh
Q 013325 232 VCTYYKLD-----SIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVP 273 (445)
Q Consensus 232 ~~~~y~v~-----~~P~l~ii~p~tg~~~~~~~G----~~~~~~~l~~L~~ 273 (445)
+++.|++. ..|..+|||+ .|.+...+.. ..+.++++..|..
T Consensus 174 iakayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 174 VSKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 56677773 4899999997 5887666532 2367777766543
No 180
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=89.64 E-value=0.65 Score=39.33 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=27.7
Q ss_pred HHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 013325 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (445)
Q Consensus 13 ~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~ 46 (445)
.|.-.|+= ||++.+.|+..|+.|||||-.||-.
T Consensus 79 dI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 79 DIELVAEQ-TGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred HHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 34444666 9999999999999999999999864
No 181
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=89.29 E-value=2.1 Score=38.38 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=52.1
Q ss_pred HHcCCe-EEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCC--CCcEEEEEeCCCCc
Q 013325 177 SVQDKW-LLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQ 253 (445)
Q Consensus 177 k~~~K~-LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tg~ 253 (445)
...+++ +++.+...+...... +.. .+ ..+..-.+.+++|.-++.+ ....++..|+++ .+|.++|+++.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~l--~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 91 FSSPKPPVLILFDNKDNESTEA-FKK-EL--QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HSTSSEEEEEEEETTTHHHHHH-HHH-HH--HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred hcCCCceEEEEEEcCCchhHHH-HHH-HH--HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 344555 555554443333333 221 11 2333333455666655665 445578899987 89999999988876
Q ss_pred eeEEEecCCChHHHHHHHH
Q 013325 254 KMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~~L~ 272 (445)
.-..-.|.++++.+...|.
T Consensus 165 ~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 165 YYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp EEE--SSCGCHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHhc
Confidence 4322377788877665553
No 182
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=89.02 E-value=0.57 Score=39.63 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=26.4
Q ss_pred HHhhhccccCCCHHHHHHHHHHcCCCHHHHHH
Q 013325 14 VSSFLEIAVGQTAETAVQFLQATSWKLDEAIQ 45 (445)
Q Consensus 14 v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~ 45 (445)
|.-.++= ||++.+.|+..|+.|||||-.||-
T Consensus 82 I~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 82 IELVMKQ-CNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence 3334555 999999999999999999999985
No 183
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=88.87 E-value=2.9 Score=32.20 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=50.5
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
.|-||. ++.++-....++||.+|..-|... .+.+.....|+.. .+. | +.+.||.++|+. +++|.+.+
T Consensus 2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~Li~~--Gk~--L--~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGL-EGIDVEDQVLLLA--GVP--L--EDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred EEEEEC--CCEEEEEECCcCcHHHHHHHHHhh-hCCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence 466676 467888899999999999999875 4566777888864 553 4 456999999998 56776543
No 184
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=88.73 E-value=4.1 Score=37.58 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecC--------C-hhHHHHHH-HcCCCC
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCT-YYKLDS 240 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~--------s-~eg~~~~~-~y~v~~ 240 (445)
.+.=.+|++||+...++|..|.. + +.+.++.+ ..|.++++..+ + .+...+++ .|++ .
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q-~-------~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~ 90 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQ-Y-------EQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-T 90 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHH-H-------HHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-C
Confidence 34445799999999999987765 4 33444443 36888887663 2 34556665 5665 4
Q ss_pred CcEEEEEeCCCC
Q 013325 241 IPVVLVVDPITG 252 (445)
Q Consensus 241 ~P~l~ii~p~tg 252 (445)
||.+.=++. +|
T Consensus 91 Fpv~~k~dv-nG 101 (183)
T PRK10606 91 FPMFSKIEV-NG 101 (183)
T ss_pred ceeEEEEcc-CC
Confidence 777766663 44
No 185
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.51 E-value=5 Score=37.93 Aligned_cols=91 Identities=10% Similarity=0.071 Sum_probs=56.0
Q ss_pred cCCeEEE-EEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------------HHH
Q 013325 179 QDKWLLV-NLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV 232 (445)
Q Consensus 179 ~~K~LlV-~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------------~~~ 232 (445)
.+||++| +.-.++|+.|.. -... -++...+|-+.++.+++++.++... ..+
T Consensus 32 ~GK~vvLff~pa~ftpvC~t-El~~--l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~i 108 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTT-EFYS--FAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNV 108 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHH-HHHH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHH
Confidence 5788777 445678888876 2111 1222334444577888888877553 234
Q ss_pred HHHcCCC-------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHh
Q 013325 233 CTYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 273 (445)
Q Consensus 233 ~~~y~v~-------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~ 273 (445)
++.|++- ..|..+|||| .|.+...+.+. .+.+++|..|..
T Consensus 109 a~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 109 AKRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5566652 3689999997 57766655432 267777776654
No 186
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=87.60 E-value=2.6 Score=29.34 Aligned_cols=64 Identities=23% Similarity=0.206 Sum_probs=47.2
Q ss_pred EECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 372 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 372 iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
+++++|.....++..+.|+..|...+.... +.....|.|..+.+... ...++.+.++. +..|.+
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~-~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKL-GLPPEQQRLLVNGKILP------DSLTLEDYGLQDGDELVL 66 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHH-CcChHHeEEEECCeECC------CCCcHHHcCCCCCCEEEE
Confidence 677899999999999999999999998864 35677899988765532 23344566666 444443
No 187
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=87.43 E-value=5.2 Score=34.42 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=34.4
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhHHH-HHHHcCCCCCcEEEEEeC
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGKK-VCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg~~-~~~~y~v~~~P~l~ii~p 249 (445)
++.+|+++-..+|..|+. -- +.+.++. ..++.++.+..++.+... +++.++ +|+-++.|+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~-~~------~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~---~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCRE-YL------RALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF---LPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHH-HH------HHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC---CCCeEEECC
Confidence 344555566889998877 32 3333332 347888888887765433 333332 344445564
No 188
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=87.31 E-value=1.9 Score=37.04 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=16.3
Q ss_pred cCCeEEEEEeCCCCcc-hhh
Q 013325 179 QDKWLLVNLQSTKEFS-SHM 197 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~-~~~ 197 (445)
.+||++|++..++|.. |..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~ 40 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPT 40 (142)
T ss_pred CCCEEEEEEEcCCCcccCHH
Confidence 6799999999999986 875
No 189
>PRK13189 peroxiredoxin; Provisional
Probab=86.92 E-value=4.1 Score=38.70 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=51.8
Q ss_pred cCCeEEEEE-eCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------------HHH
Q 013325 179 QDKWLLVNL-QSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV 232 (445)
Q Consensus 179 ~~K~LlV~l-~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------------~~~ 232 (445)
.+||++|+. -.++|+.|.. --.. -+....+|-+.++.+++++.++... ..+
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~t-El~~--l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~i 110 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTT-EFVA--FQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEI 110 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHH-HHHH--HHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHH
Confidence 477776644 4677888865 2111 1222233333466666776665432 234
Q ss_pred HHHcCCC-------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHh
Q 013325 233 CTYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 273 (445)
Q Consensus 233 ~~~y~v~-------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~ 273 (445)
++.|++. ..|.++|||| .|.+...+-+. .+.++++..|..
T Consensus 111 a~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 111 AKKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred HHHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5667653 4689999997 57765554432 246666665544
No 190
>PRK13599 putative peroxiredoxin; Provisional
Probab=86.89 E-value=3.1 Score=39.30 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=49.5
Q ss_pred cCCeEE-EEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------------HHH
Q 013325 179 QDKWLL-VNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV 232 (445)
Q Consensus 179 ~~K~Ll-V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------------~~~ 232 (445)
.+||++ +++-.++|+.|.. -... -+....+|-+.++.+++++.++.+. ..+
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~-El~~--l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~v 103 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTT-EFVE--FARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKV 103 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHH-HHHH--HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchH
Confidence 467754 4555677877765 1110 0111122223456666666666432 234
Q ss_pred HHHcCCC-------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHh
Q 013325 233 CTYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 273 (445)
Q Consensus 233 ~~~y~v~-------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~ 273 (445)
+..|++. ..|+++|||| .|.+...+... ...++++..|..
T Consensus 104 a~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 104 SNQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred HHHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 5667752 5799999997 47766554321 245666665543
No 191
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=86.52 E-value=4.4 Score=32.08 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=51.5
Q ss_pred eEEEEECCCCce--EEEeeCCCCchHHHHHHHHhhcCC-CCCcCeEEEcCCCCCcccCCCCcCCchhhcC--Cc-CceEE
Q 013325 368 CRVGVRLPDGRR--MQRNFLRTDPIQLLWSYCYSQLEG-SEMKPFRLTHAIPGATKSLDYDSKLTFEDSG--LA-NAMIS 441 (445)
Q Consensus 368 ~~I~iRlP~G~r--~~rrF~~~d~l~~l~~fv~~~~~~-~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~g--L~-~~~v~ 441 (445)
++|.||.|+|++ +.-.+..++||.+|-.-|....+. .....-+|+.. +|. | +.+.||++.+ +. .-+|.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~--GKi--L--kD~~tL~~~~~~~~~~~tiH 75 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS--GKL--L--PDHLKLRDVLRKQDEYHMVH 75 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc--Cee--c--cchhhHHHHhhcccCCceEE
Confidence 579999999998 555558999999999999876432 23456677764 554 5 4569999996 55 45565
Q ss_pred EEe
Q 013325 442 VTW 444 (445)
Q Consensus 442 v~~ 444 (445)
+++
T Consensus 76 LV~ 78 (79)
T cd01790 76 LVC 78 (79)
T ss_pred EEe
Confidence 553
No 192
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=86.41 E-value=1.9 Score=29.91 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=42.1
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHH-HHHcCCCCCcEEEEEeCC
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV-CTYYKLDSIPVVLVVDPI 250 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~-~~~y~v~~~P~l~ii~p~ 250 (445)
|++++..+|..|+. +. .++... .+.+.++.+..++.+....... ...+++..+|.+.++++.
T Consensus 1 l~~~~~~~c~~c~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQA-LR-PVLAEL---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHh-hh-hHHHHH---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 45677788988887 42 222222 4556788888888776554333 257888999999999863
No 193
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=86.38 E-value=5 Score=31.12 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=51.2
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+|.|++ +|+.+.-.+..++||.+|-+-+... .+.+...-.|+..=.+.. .+ ..+.||.++|+.+ +.|++
T Consensus 2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~-tgvp~~~QKLi~~~~~Gk-~l--~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTL-TGVLPERQKLLGLKVKGK-PA--EDDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-HCCCHHHEEEEeecccCC-cC--CCCcCHHHcCCCCCCEEEE
Confidence 577777 6778888999999999999999886 467777888886201221 23 4579999999984 55554
No 194
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=86.34 E-value=5.7 Score=34.41 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHHHcCCC----C--CcEEEEEeCCCCceeEEEecC
Q 013325 231 KVCTYYKLD----S--IPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 231 ~~~~~y~v~----~--~P~l~ii~p~tg~~~~~~~G~ 261 (445)
.++..|++. . .|+.+|||+ +|+++..+.|.
T Consensus 98 ~~~~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~ 133 (149)
T cd03018 98 EVAKAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD 133 (149)
T ss_pred HHHHHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence 445555554 2 237778885 57777777664
No 195
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=85.94 E-value=2.9 Score=39.01 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=51.1
Q ss_pred CeEEE-EEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------------HHHHH
Q 013325 181 KWLLV-NLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVCT 234 (445)
Q Consensus 181 K~LlV-~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------------~~~~~ 234 (445)
||++| ++-.++|+.|.. -...+ .....+|=+.++.+++++.++.+. ..+++
T Consensus 26 k~vvlf~~pa~~cp~C~~-el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~ 102 (203)
T cd03016 26 SWGILFSHPADFTPVCTT-ELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAK 102 (203)
T ss_pred CEEEEEEecCCCCCcCHH-HHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHH
Confidence 78766 455678888876 21111 111222223467788887776432 34566
Q ss_pred HcCCC--------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHh
Q 013325 235 YYKLD--------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 273 (445)
Q Consensus 235 ~y~v~--------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~ 273 (445)
.|++. ..|.++|||| .|.+...+.|. .+.++++..|..
T Consensus 103 ~yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 103 LLGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred HcCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 67753 2457999997 48776666553 245666655543
No 196
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=85.57 E-value=1.7 Score=37.07 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=30.3
Q ss_pred CCChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 013325 4 VLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~ 46 (445)
.++.++-+ +| |+= +|.+.+.|+..|+.||+||-.||-.
T Consensus 82 ~i~eeDIk-LV---~eQ-a~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 82 DISEEDIK-LV---MEQ-AGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred CCCHHHHH-HH---HHH-hCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 46666644 44 445 8999999999999999999999854
No 197
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=84.75 E-value=3.8 Score=30.40 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=35.1
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
++.++.++|..|+. +.+ +| +++.. ...++-+..++++.. ..++..|++.++|+++|
T Consensus 3 v~~f~~~~C~~C~~-~~~-~l--~~l~~-~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPD-AVQ-AA--NRIAA-LNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHH-HHH-HH--HHHHH-hCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 34557789999988 522 22 11111 123566666676543 34788999999999865
No 198
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=84.75 E-value=2.5 Score=36.18 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeC-------CCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhH-------HH
Q 013325 169 FEKAKDAASVQDKWLLVNLQS-------TKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEG-------KK 231 (445)
Q Consensus 169 ~~eA~~~Ak~~~K~LlV~l~~-------~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg-------~~ 231 (445)
|.++++.....+++++|++.+ +||.+|.. ..+-|.+.+. ++.++..+.+.+... ++
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~-------aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR 80 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVA-------AEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFR 80 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHH-------HHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHH
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHH-------HHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCce
Confidence 455555555677899998875 46666655 4455655555 366766666644432 22
Q ss_pred HHHHcCCCCCcEEEEEe
Q 013325 232 VCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 232 ~~~~y~v~~~P~l~ii~ 248 (445)
.-..+++..+|+|+-+.
T Consensus 81 ~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 81 TDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp H--CC---SSSEEEECT
T ss_pred EcceeeeeecceEEEEC
Confidence 22368899999999887
No 199
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=83.69 E-value=4.2 Score=31.54 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=47.4
Q ss_pred CCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 376 DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 376 ~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
+|+.+.-.+..++||..|.+-|... .+.+.....|+.. .+. + +.+.||.++|+. +++|.|.+
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEE-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHH-HCCCHHHEEEEEC--CEE--c--CCCCcHHHcCCCCCCEEEEEE
Confidence 5778888999999999999999875 4666777888754 432 3 446899999998 56666543
No 200
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=82.75 E-value=3.2 Score=32.52 Aligned_cols=71 Identities=25% Similarity=0.359 Sum_probs=45.5
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCC--CC---CcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG--SE---MKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 441 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~--~~---~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~ 441 (445)
.|+|-|..++|+++.-....+-+|..|..-+-..+.. .. ...|.|.+. +.+ ..+.+.||.++|+.++.++
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~-~g~----~L~~~~tL~~~gV~dGd~L 76 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARA-GGR----PLDPDQTLADAGVRDGDVL 76 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-G-GTE----EEETTSBCGGGT--TT-EE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEec-CCc----ccCCcCcHhHcCCCCCCEE
Confidence 5899999999999999999999999999887664322 11 125777742 222 3478999999999976655
Q ss_pred E
Q 013325 442 V 442 (445)
Q Consensus 442 v 442 (445)
+
T Consensus 77 ~ 77 (79)
T PF08817_consen 77 V 77 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 201
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.68 E-value=2 Score=45.66 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=38.6
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
.+++|--|++. ||...+=+..+|+.+|||.+.|+++|-+...+
T Consensus 535 ~~e~l~~~~~~-tGln~~~s~~c~e~~nWdy~~A~k~F~~~ks~ 577 (585)
T KOG3763|consen 535 TDEKLLKFQEE-TGLNSEWSTMCLEQNNWDYERALKLFIELKSD 577 (585)
T ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHccCCHHHHHHHHHHhhcC
Confidence 35688899999 99999999999999999999999999986544
No 202
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=12 Score=33.64 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=60.6
Q ss_pred HHHHHHcCCeEEEEEeC-CCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------HHH
Q 013325 173 KDAASVQDKWLLVNLQS-TKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKV 232 (445)
Q Consensus 173 ~~~Ak~~~K~LlV~l~~-~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------~~~ 232 (445)
+..+.-.+||++||++- .+..-|..=.|. -++...+|=+-+.++++++.|+++. ..+
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~---Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v 99 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACD---FRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEV 99 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHH---HHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHH
Confidence 45556678899999985 334444320221 1233344444589999999999776 335
Q ss_pred HHHcCC------------CCCcEEEEEeCCCCceeEEEecC---CChHHHHHHHHh
Q 013325 233 CTYYKL------------DSIPVVLVVDPITGQKMRSWCGM---VQPESLLEDLVP 273 (445)
Q Consensus 233 ~~~y~v------------~~~P~l~ii~p~tg~~~~~~~G~---~~~~~~l~~L~~ 273 (445)
+..|++ ..-+..+||++ .|.+...|... -.+++.++.|..
T Consensus 100 ~~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 100 AEAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred HHHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHH
Confidence 666776 13577889996 68888888542 235566666554
No 203
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=82.13 E-value=7.1 Score=37.36 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.0
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
..+++.+++...|++++-+ |++ +.|..+++.|...|..
T Consensus 192 ~~la~~lgi~gTPtiv~~~---G~~---~~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 192 YALGVQFGVQGTPAIVLSN---GTL---VPGYQGPKEMKAFLDE 229 (232)
T ss_pred HHHHHHcCCccccEEEEcC---CeE---eeCCCCHHHHHHHHHH
Confidence 4456678889999988544 654 4799999988776654
No 204
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=81.73 E-value=5.7 Score=30.76 Aligned_cols=63 Identities=21% Similarity=0.062 Sum_probs=47.2
Q ss_pred EECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEc--CCCCCcccCCCCcCCchhhcCCc
Q 013325 372 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH--AIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 372 iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~--~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
|+||||+.++-....+.+.++|++-|..++.=.+..-|.|.- .-... ..-.+.+++|.+..-.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~--~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGE--HHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSS--EEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCc--ceeccCcccHHHHcCC
Confidence 689999999999999999999999998887434566788877 22221 1234678898888755
No 205
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=81.65 E-value=6.7 Score=38.37 Aligned_cols=91 Identities=14% Similarity=0.240 Sum_probs=60.8
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEe
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 259 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~ 259 (445)
.-|++|.|+.+....|.. |+.-+ ..-..+|..-.||=....... ++..|+...+|+|+|.- .|.++..+-
T Consensus 146 ~~~VVVHiY~~~~~~C~~-mn~~L--~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk--~G~l~~~~V 215 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEI-MNSCL--ECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYK--NGDLIGNFV 215 (265)
T ss_dssp T-EEEEEEE-TTSCCHHH-HHHHH--HHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEE--TTEEEEEEC
T ss_pred CcEEEEEEEeCCCchHHH-HHHHH--HHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEE--CCEEEEeEE
Confidence 469999999999999999 86533 244455666778766543321 45578889999999998 699999887
Q ss_pred cCC---ChHHHHHHHHhhhhcCCc
Q 013325 260 GMV---QPESLLEDLVPFMDGGPR 280 (445)
Q Consensus 260 G~~---~~~~~l~~L~~~~~~~~~ 280 (445)
|.. .-+-+...|..+|..+..
T Consensus 216 ~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 216 GLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TGGGCT-TT--HHHHHHHHHTTTS
T ss_pred ehHHhcCCCCCHHHHHHHHHHcCC
Confidence 742 345567788888887654
No 206
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=81.48 E-value=7.5 Score=30.01 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=39.1
Q ss_pred eCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEec-CCChHH
Q 013325 188 QSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG-MVQPES 266 (445)
Q Consensus 188 ~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G-~~~~~~ 266 (445)
.+++|..|.. +- ..+.+.+.++=+-+.+.. ..+...+ ..|++.+.|++ +|+ |++. +.| ..+.++
T Consensus 6 ~~~~C~~C~~-~~------~~~~~~~~~~~i~~ei~~-~~~~~~~-~~ygv~~vPal-vIn---g~~~--~~G~~p~~~e 70 (76)
T PF13192_consen 6 FSPGCPYCPE-LV------QLLKEAAEELGIEVEIID-IEDFEEI-EKYGVMSVPAL-VIN---GKVV--FVGRVPSKEE 70 (76)
T ss_dssp ECSSCTTHHH-HH------HHHHHHHHHTTEEEEEEE-TTTHHHH-HHTT-SSSSEE-EET---TEEE--EESS--HHHH
T ss_pred eCCCCCCcHH-HH------HHHHHHHHhcCCeEEEEE-ccCHHHH-HHcCCCCCCEE-EEC---CEEE--EEecCCCHHH
Confidence 4666998887 42 233444433213333322 2444455 89999999999 555 6654 678 556666
Q ss_pred HHHHH
Q 013325 267 LLEDL 271 (445)
Q Consensus 267 ~l~~L 271 (445)
|.+.|
T Consensus 71 l~~~l 75 (76)
T PF13192_consen 71 LKELL 75 (76)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 207
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=81.43 E-value=5.9 Score=30.87 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=47.1
Q ss_pred ECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-C-ceEEE
Q 013325 373 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-N-AMISV 442 (445)
Q Consensus 373 RlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~-~~v~v 442 (445)
+...|+.++-.|..++||..|-..|... .+.+....+| |-.+. + .+.+.||.++|+. + .+|++
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~-~gip~~~QrL---~~G~~--L-~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLD-YGFPPAVQRW---VIGQR--L-ARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEE---EcCCe--e-CCCcCCHHHcCCCCCCCEEEE
Confidence 4556778888999999999999999876 4656667788 33443 4 3567899999997 5 55544
No 208
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=80.03 E-value=13 Score=29.58 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=50.0
Q ss_pred eEEEEECCCCc--eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcc--cCCCCcCCchhhcCCcCceEE
Q 013325 368 CRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATK--SLDYDSKLTFEDSGLANAMIS 441 (445)
Q Consensus 368 ~~I~iRlP~G~--r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~--~l~~~~~~Tl~e~gL~~~~v~ 441 (445)
++|.|..++-+ ...+||..+.||..|-.-|.... |......+|.--...... ....+.+++|...|+.+.+.+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i 78 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-GIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRI 78 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-TS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-CCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEE
Confidence 56778887774 89999999999999999998864 656666666542111111 112456899999999965543
No 209
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=79.33 E-value=16 Score=26.86 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=40.2
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCC--hhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecC
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s--~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
..++.++|..|+. . + .++++ +.-+..++++. .....+...+++..+|++.+ + |+. +.|.
T Consensus 3 ~lf~~~~C~~C~~-~-~---------~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g~ 64 (74)
T TIGR02196 3 KVYTTPWCPPCKK-A-K---------EYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVGF 64 (74)
T ss_pred EEEcCCCChhHHH-H-H---------HHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---EeeC
Confidence 3456678998887 3 2 22332 33344456654 23455778899999999876 2 443 6674
Q ss_pred CChHHHHHH
Q 013325 262 VQPESLLED 270 (445)
Q Consensus 262 ~~~~~~l~~ 270 (445)
+++.+...
T Consensus 65 -~~~~i~~~ 72 (74)
T TIGR02196 65 -DPEKLDQL 72 (74)
T ss_pred -CHHHHHHH
Confidence 66655443
No 210
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=77.50 E-value=5.6 Score=39.22 Aligned_cols=102 Identities=11% Similarity=0.173 Sum_probs=69.5
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEE-eecCChhHHHHHHHcCCCCCcE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQ-VYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~-~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
+..++++-...-|.++-|+ |.++.+||.-|++ | .-|| ++|.-.++.-=+... +..+-+.-..+++.+++..||+
T Consensus 29 ~VeDLddkFkdnkdddiW~-VdFYAPWC~HCKk-L-ePiW--deVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPT 103 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWF-VDFYAPWCAHCKK-L-EPIW--DEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPT 103 (468)
T ss_pred hhhhhhHHhhhcccCCeEE-EEeechhhhhccc-c-cchh--HHhCcchhhcCCceeecccccccchhhHhhhccCCCce
Confidence 3455566666666666664 8999999999999 6 3566 345555554322222 2344555677899999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
|.++. |-......|.-..+.+++..+.+
T Consensus 104 Ik~~k---gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 104 IKFFK---GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred EEEec---CCeeeecCCCccHHHHHHHHHhc
Confidence 99987 44455667888888888766554
No 211
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=77.38 E-value=8.4 Score=37.31 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=30.6
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 231 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 231 ~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
.+++.+++...|++++.+. +|+ +..+.|..++++|.+.|.
T Consensus 210 ~l~~~lGv~GTPaiv~~d~-~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 210 KLMDDLGANATPAIYYMDK-DGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHhC
Confidence 3566788999999999985 353 456789999988877663
No 212
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=76.74 E-value=20 Score=29.91 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=49.9
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeec--CChhHHHHHHHcCCC-CCcEEEEEeCCC
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYD--DTSEGKKVCTYYKLD-SIPVVLVVDPIT 251 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~--~s~eg~~~~~~y~v~-~~P~l~ii~p~t 251 (445)
...++++|+=|++.|.-|.+++ ..+..+++.+ .-+|-+++ ..+-...++..|+|. .=|-+++|. +
T Consensus 17 S~~~~~~iFKHSt~C~IS~~a~-------~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~--~ 87 (105)
T PF11009_consen 17 SKEKPVLIFKHSTRCPISAMAL-------REFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK--N 87 (105)
T ss_dssp ---SEEEEEEE-TT-HHHHHHH-------HHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE--T
T ss_pred cccCcEEEEEeCCCChhhHHHH-------HHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE--C
Confidence 3489999999999999887723 5566666532 33443344 334557788899995 589999998 6
Q ss_pred CceeEEEec-CCChHHH
Q 013325 252 GQKMRSWCG-MVQPESL 267 (445)
Q Consensus 252 g~~~~~~~G-~~~~~~~ 267 (445)
|++++.-+. .++++.+
T Consensus 88 g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 88 GKVVWHASHWDITAEAL 104 (105)
T ss_dssp TEEEEEEEGGG-SHHHH
T ss_pred CEEEEECccccCCHHhc
Confidence 998876654 4676654
No 213
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=75.74 E-value=13 Score=32.22 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=44.0
Q ss_pred HHHHhhcc-EEEEEeecCChhHHHHHHHcCCC--CCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 209 VSQTISTN-FIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 209 V~~~l~~~-FV~~~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
|..-.+.. +.|.-++.+. -..+...+++. .||.++++++..+ +-....|.++.+.+.+.+..+++-
T Consensus 49 vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 49 VAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 33333445 5554334443 33388889984 5999999998655 333366888999888888888774
No 214
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=73.72 E-value=9.9 Score=29.75 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHhhcC-C-CCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 385 LRTDPIQLLWSYCYSQLE-G-SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 385 ~~~d~l~~l~~fv~~~~~-~-~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
..++||..|..-|....+ + ++...++|+.. .|. | +.+.||++.|+. +++|.+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~--GKi--L--~D~~TL~dygI~~gstlhL 72 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHC--GRK--L--KDDQTLDFYGIQSGSTIHI 72 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeC--CcC--C--CCCCcHHHcCCCCCCEEEE
Confidence 467999999999988642 2 24667899854 664 4 557899999998 566554
No 215
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=71.81 E-value=0.59 Score=46.74 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=62.9
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh------hHHHHHHHcCCC--CCcEEEEE
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS------EGKKVCTYYKLD--SIPVVLVV 247 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~------eg~~~~~~y~v~--~~P~l~ii 247 (445)
++-..+|+.|.++.+-.++|++ ++...|..+.++.++-+++.+|.+...++ ++++....+... ..++..++
T Consensus 7 ~~lv~~fl~It~~~t~e~A~q~-L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~sp~~~~re~l~~~~~~~d~~~~s~~ 85 (356)
T KOG1364|consen 7 RALVSKFLAITVQQTVEIATQY-LSAADWDLEAAINLFFEHGGFTQVYSSSSAAPSPIEPQREVLFDPLGIMDQSTSSIL 85 (356)
T ss_pred HHHHHHHHHHhccccHHHHHHH-HHhcCCcHHHHHHHHHHhcccccccCCcccCCCcccccceeeeccccccccCccccc
Confidence 3445688999998888999999 99999999999999999999998877333 334444455544 78999999
Q ss_pred eCCCCcee
Q 013325 248 DPITGQKM 255 (445)
Q Consensus 248 ~p~tg~~~ 255 (445)
+|.+|...
T Consensus 86 ~p~~~~~~ 93 (356)
T KOG1364|consen 86 DPSENQDD 93 (356)
T ss_pred Ccccccch
Confidence 99987543
No 216
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=71.51 E-value=56 Score=28.31 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=65.4
Q ss_pred HHHHH--HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 172 AKDAA--SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 172 A~~~A--k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
++.+| ..+.|.++|-+-.++...|-. |. ++| ..+..-+++.-++|-++++ +-..+...|.+...|++.+.-.
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~-mD-~~L--~~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMK-MD-ELL--SSIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFN 86 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhh-HH-HHH--HHHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEc
Confidence 44444 357789999998888888877 52 222 2344445666678877776 6677888999999998876553
Q ss_pred C--------CCceeEEEecC-CChHHHHHHHHhhhh
Q 013325 250 I--------TGQKMRSWCGM-VQPESLLEDLVPFMD 276 (445)
Q Consensus 250 ~--------tg~~~~~~~G~-~~~~~~l~~L~~~~~ 276 (445)
. ||. -..|.|. -+.++|+..+..+..
T Consensus 87 ~kHmkiD~gtgd-n~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 87 NKHMKIDLGTGD-NNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred CceEEEeeCCCC-CceEEEEeccHHHHHHHHHHHHH
Confidence 2 221 1234443 378889988877765
No 217
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=70.72 E-value=12 Score=26.47 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
+++|.|-..+-.|.+.++-+.=|+++|-|+..||+..++.
T Consensus 10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T PF11547_consen 10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence 5688888888899999999999999999999999988764
No 218
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=70.27 E-value=30 Score=31.53 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=49.3
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
...|+|.||||+.+.-++..+.++++|.+-|...+.-....-|.|...-+........+...+|.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4789999999999999999999999999999887533335567776543332110123456677766643
No 219
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=11 Score=39.96 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=61.9
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCC
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 251 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t 251 (445)
..+..++|=+||-++.+||.-|+. |.. + =+++.+.++ ++.|+-.+|....|-. ...++.||+|++.--..
T Consensus 378 ~iv~de~KdVLvEfyAPWCgHCk~-laP-~--~eeLAe~~~~~~~vviAKmDaTaNd~~----~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 378 DIVLDEGKDVLVEFYAPWCGHCKA-LAP-I--YEELAEKYKDDENVVIAKMDATANDVP----SLKVDGFPTILFFPAGH 449 (493)
T ss_pred HHhhccccceEEEEcCcccchhhh-hhh-H--HHHHHHHhcCCCCcEEEEeccccccCc----cccccccceEEEecCCC
Confidence 356788999999999999999998 631 1 245555555 3678888888666532 34567799999887422
Q ss_pred CceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 252 GQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 252 g~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.+......|.-+.++|. .|+..+
T Consensus 450 k~~pv~y~g~R~le~~~----~fi~~~ 472 (493)
T KOG0190|consen 450 KSNPVIYNGDRTLEDLK----KFIKKS 472 (493)
T ss_pred CCCCcccCCCcchHHHH----hhhccC
Confidence 23344556765555544 666654
No 220
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=69.21 E-value=15 Score=26.62 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=31.7
Q ss_pred EEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 186 NLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 186 ~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
....++|..|.. ++++|++ .|-.+-++.+......+...++..++|.+.|
T Consensus 3 vy~~~~C~~C~~-----------~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 3 VYTKPGCPYCKK-----------AKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEESTTSHHHHH-----------HHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEEcCCCcCHHH-----------HHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 345578998887 4555554 3666644444333344555568899999986
No 221
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.95 E-value=14 Score=37.87 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=65.0
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 252 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg 252 (445)
..+..+...||-++.++|..|+. |. -.| ..+...+. .+.-++.++.+ -...+++.+.+..||++.+..+. +
T Consensus 157 ~~~~~~~~~lv~f~aPwc~~ck~-l~-~~~--~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~~-~ 229 (383)
T KOG0191|consen 157 TVKDSDADWLVEFYAPWCGHCKK-LA-PEW--EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPPG-E 229 (383)
T ss_pred hhhccCcceEEEEeccccHHhhh-cC-hHH--HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecCC-C
Confidence 44556777788889999999998 62 222 22333343 45555555554 56678889999999999777653 2
Q ss_pred ceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 253 QKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 253 ~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+......|.-+.+.++..+.......
T Consensus 230 ~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 230 EDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cccccccccccHHHHHHHHHhhcCCC
Confidence 33455567778888888777776653
No 222
>CHL00098 tsf elongation factor Ts
Probab=68.95 E-value=6.4 Score=36.82 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=34.6
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
++|.+.-+. ||+..-.|+.-|..+|||++.|++.--..+
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g 41 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKG 41 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 367888889 999999999999999999999998877653
No 223
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=68.48 E-value=18 Score=37.04 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=52.0
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhc-CCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~-~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
-|+||-++|.+ .-.|..+|.+..|..-+-+.+ .++....|.+.++--.+-.......++|+.++||. +.+|.+++
T Consensus 2 i~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 37899999974 347899999987665544432 24677889887763322222335679999999998 56777765
No 224
>PLN02560 enoyl-CoA reductase
Probab=67.80 E-value=30 Score=34.63 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=48.2
Q ss_pred EEEEECCCCceE---EEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC----CCCCcccCCCCcCCchhhcCCc-CceE
Q 013325 369 RVGVRLPDGRRM---QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA----IPGATKSLDYDSKLTFEDSGLA-NAMI 440 (445)
Q Consensus 369 ~I~iRlP~G~r~---~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~----fPr~~~~l~~~~~~Tl~e~gL~-~~~v 440 (445)
+|.|+..+|+.+ .-....+.||.+|..-+..........+-+|.-. =|+.. ..+.++||.+.|+. .++|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~---~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPT---VLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCcc---ccCCCCCHHhcCCCCCceE
Confidence 477888889876 4678899999999999987632223345556531 12221 23557899999997 4556
Q ss_pred EEE
Q 013325 441 SVT 443 (445)
Q Consensus 441 ~v~ 443 (445)
.|+
T Consensus 79 y~k 81 (308)
T PLN02560 79 VFK 81 (308)
T ss_pred EEE
Confidence 653
No 225
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=67.20 E-value=25 Score=27.40 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=42.8
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcC--CCCCcEEEEEe
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYK--LDSIPVVLVVD 248 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~--v~~~P~l~ii~ 248 (445)
+++++|++.+++|..|+. + .+.+.++-++ ...+..++..+ .....+..|+ +..+|.+.+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~-~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRA-E------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred CceEEEEEEcCcCHHHHh-h------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEe
Confidence 888999877999999988 4 5556655544 35666556641 4556667777 78889887554
No 226
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=66.93 E-value=7.5 Score=36.31 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
++|.+..+. ||+..-.|+.-|..+|||++.|+..--..+
T Consensus 6 ~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g 44 (198)
T PRK12332 6 KLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKG 44 (198)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 478888889 999999999999999999999999887753
No 227
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=66.80 E-value=24 Score=27.32 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=37.2
Q ss_pred CCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 385 LRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 385 ~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
..+.||.+|...+......+.....+|.-.+.++. + ..+.||.+.|+.. ++|+|+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~--L--~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKS--L--KDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcc--c--CCcccHhhcCCCCCCEEEEe
Confidence 45679999999988764333455666765665553 4 3466899999974 556553
No 228
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=66.71 E-value=21 Score=34.58 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=31.9
Q ss_pred HHHHHHcCC---------------CCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 230 KKVCTYYKL---------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 230 ~~~~~~y~v---------------~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.++|+.|+| ++-=++.+|+|. |+.+...--+-+++++...+.+-+..+
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPe-g~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPE-GEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCC-cceehhhcccCCHHHHHHHHHHHHHhc
Confidence 567777775 233467788984 776654322578888888887766544
No 229
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=66.14 E-value=7.4 Score=38.55 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
++|.+..+. ||+..-.|+.-|+.+|||++.|+..-=..+
T Consensus 6 ~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG 44 (290)
T TIGR00116 6 QLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESG 44 (290)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 367888899 999999999999999999999999887753
No 230
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=66.12 E-value=15 Score=27.86 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=36.8
Q ss_pred CCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCce
Q 013325 374 LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM 439 (445)
Q Consensus 374 lP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~ 439 (445)
.++|+|..-+..++.+|.+|..=+-.+. +.+...|.|..+ ++. .|.+.++.=+||.|.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~-~l~~~~~~L~h~--~k~----ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKF-GLDPSSYDLKHN--NKP----LDLSLPFRLSNLPNNA 61 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHT-T--GGG-EEEET--TEE----ESSS-BHHHH---SS-
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHc-CCCccceEEEEC--CEE----eccccceeecCCCCCC
Confidence 4789999999999999999988776653 667779999986 332 3889999999998543
No 231
>PRK09377 tsf elongation factor Ts; Provisional
Probab=65.68 E-value=7.7 Score=38.45 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=35.0
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
.+|.+.-+. ||+..-.|+.-|+.+|||++.|++.--..+
T Consensus 7 ~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G 45 (290)
T PRK09377 7 ALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKG 45 (290)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 378888899 999999999999999999999999887743
No 232
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=65.09 E-value=24 Score=28.15 Aligned_cols=56 Identities=16% Similarity=0.266 Sum_probs=32.8
Q ss_pred CCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhH-HHHHHHcCCCCCcEEEEEe
Q 013325 180 DKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 180 ~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg-~~~~~~y~v~~~P~l~ii~ 248 (445)
.++++|+..+ ++|..|.. ++++|++ .|...-+..+ ++. ..+....+..++|.| +|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~-----------ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRK-----------VVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQL-YVN 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHH-----------HHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE-EEC
Confidence 3567777765 56777766 4555554 3444433333 333 334455677889998 455
No 233
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=62.84 E-value=12 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.397 Sum_probs=21.7
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013325 22 VGQTAETAVQFLQATSWKLDEAIQLFY 48 (445)
Q Consensus 22 t~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (445)
...+......||.+.+||++.|+.++-
T Consensus 27 ~~~~d~~llRFLRARkf~v~~A~~mL~ 53 (55)
T PF03765_consen 27 EDHDDNFLLRFLRARKFDVEKAFKMLK 53 (55)
T ss_dssp SS-SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 345779999999999999999998763
No 234
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=62.55 E-value=22 Score=29.45 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=40.9
Q ss_pred eCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEEe
Q 013325 384 FLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 444 (445)
Q Consensus 384 F~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~~ 444 (445)
-+.++||..|-.-|...+ +..+..=.|+.+ .+. | .|.+.||.+.|+.+.+++.-|
T Consensus 21 V~~~~TVg~LK~lImQ~f-~V~P~dQkL~~d--G~~--L-~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 21 VSANQTLKELKIQIMHAF-SVAPFDQNLSID--GKI--L-SDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred eCccccHHHHHHHHHHHh-cCCcccceeeec--Cce--e-ccCCccHHhcCCCCCCEEEEE
Confidence 678899999999888764 434444467777 553 5 578999999999977765544
No 235
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=62.46 E-value=5 Score=39.03 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=32.0
Q ss_pred hhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 16 SFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 16 ~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
.|.++|+.+++..|+.+|..+.|+++.|++.||..
T Consensus 30 ~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~s 64 (349)
T KOG2756|consen 30 VEFASVASCDAAVAQCFLAENDWEMERALNSYFEP 64 (349)
T ss_pred HHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCc
Confidence 56677799999999999999999999999999983
No 236
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=61.90 E-value=10 Score=21.25 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=13.9
Q ss_pred chHHHHHHHHHHhHHH
Q 013325 308 IENEELLQALAASMET 323 (445)
Q Consensus 308 ~ede~~~~al~~sl~~ 323 (445)
++|+++++|++.|++.
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 5789999999999874
No 237
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=60.44 E-value=72 Score=25.20 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=48.6
Q ss_pred eEEEEECCC-CceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCccc--CCCCcCCchhhcCCcC-ceEEEE
Q 013325 368 CRVGVRLPD-GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKS--LDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 368 ~~I~iRlP~-G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~--l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
++|.|..+. .....|||..+.||..|-.=+... .|.+...-+|.- |..+... ...+.+++|...|+.+ ..|.|+
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-~G~~~~~mrL~l-~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELV-VGTPASSMRLQL-FDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-HCCCccceEEEE-EcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 345555543 446899999999999999988775 355555666632 2233111 1246789999999984 556553
No 238
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=59.88 E-value=37 Score=36.74 Aligned_cols=84 Identities=19% Similarity=0.111 Sum_probs=55.8
Q ss_pred HHHHHHcCCeEEEEE-eCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 173 KDAASVQDKWLLVNL-QSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 173 ~~~Ak~~~K~LlV~l-~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
++.-++-.|++-|-+ .+++|..|.. .. ..+.++..+ +.-.-- ++..+-..++..|++-+.|+++|
T Consensus 468 ~~~i~~~~~~~~i~v~~~~~C~~Cp~-~~------~~~~~~~~~~~~i~~~~--i~~~~~~~~~~~~~v~~vP~~~i--- 535 (555)
T TIGR03143 468 LEKIKKITKPVNIKIGVSLSCTLCPD-VV------LAAQRIASLNPNVEAEM--IDVSHFPDLKDEYGIMSVPAIVV--- 535 (555)
T ss_pred HHHHHhcCCCeEEEEEECCCCCCcHH-HH------HHHHHHHHhCCCceEEE--EECcccHHHHHhCCceecCEEEE---
Confidence 334445567876655 7888998877 32 223344433 344443 34455568899999999999986
Q ss_pred CCCceeEEEecCCChHHHHHHH
Q 013325 250 ITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 250 ~tg~~~~~~~G~~~~~~~l~~L 271 (445)
+|+++ +.|..+.++++..|
T Consensus 536 -~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 -DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred -CCEEE--EeeCCCHHHHHHhh
Confidence 45554 56988999998866
No 239
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=58.17 E-value=9.3 Score=33.06 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=39.4
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc-EEEEEeecCChhHHHHHHHc---CCCCCcEEEEEeCCCC
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN-FIFWQVYDDTSEGKKVCTYY---KLDSIPVVLVVDPITG 252 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~-FV~~~~~~~s~eg~~~~~~y---~v~~~P~l~ii~p~tg 252 (445)
...++.-++.|..+||.+|.. .-|-+..+...+ -|-..+ +...+...+...| +....|.++|++. .|
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~-------~vP~l~kiae~~p~i~~~~-i~rd~~~el~~~~lt~g~~~IP~~I~~d~-~~ 108 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCAR-------NVPVLAKIAEANPNIEVRI-ILRDENKELMDQYLTNGGRSIPTFIFLDK-DG 108 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHH-------HHHHHHHHHHH-TTEEEEE-E-HHHHHHHTTTTTT-SS--SSEEEEE-T-T-
T ss_pred hcCCCcEEEEEECCCchhHHH-------HHHHHHHHHHhCCCCeEEE-EEecCChhHHHHHHhCCCeecCEEEEEcC-CC
Confidence 334555666778899999988 347777776654 222221 1223344444444 3467999999995 48
Q ss_pred ceeEEEecC
Q 013325 253 QKMRSWCGM 261 (445)
Q Consensus 253 ~~~~~~~G~ 261 (445)
+.+.+|-..
T Consensus 109 ~~lg~wger 117 (129)
T PF14595_consen 109 KELGRWGER 117 (129)
T ss_dssp -EEEEEESS
T ss_pred CEeEEEcCC
Confidence 999998653
No 240
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=56.33 E-value=33 Score=25.60 Aligned_cols=69 Identities=12% Similarity=-0.040 Sum_probs=34.8
Q ss_pred EEeCCCCcchhhhhhhcccCChhHHHHhhccEE-EEEeecCCh-hHHHHHHH--cCCCCCcEEEEEeCCCCceeEEEecC
Q 013325 186 NLQSTKEFSSHMVLNRDTWANEAVSQTISTNFI-FWQVYDDTS-EGKKVCTY--YKLDSIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 186 ~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV-~~~~~~~s~-eg~~~~~~--y~v~~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
-+..++|..|.. + ..++.++-+ +..++++.. +....... ++...+|++ +++ +|..+. .
T Consensus 4 ly~~~~C~~C~~-~----------~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~----~ 65 (77)
T TIGR02200 4 VYGTTWCGYCAQ-L----------MRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT----N 65 (77)
T ss_pred EEECCCChhHHH-H----------HHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EEC--CCeEec----C
Confidence 345578998887 3 334444222 223455432 22222222 477899987 444 455432 2
Q ss_pred CChHHHHHHHH
Q 013325 262 VQPESLLEDLV 272 (445)
Q Consensus 262 ~~~~~~l~~L~ 272 (445)
.+..++...|.
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 34455655553
No 241
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=55.50 E-value=24 Score=32.46 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=26.6
Q ss_pred hHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHH
Q 013325 228 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLED 270 (445)
Q Consensus 228 eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~ 270 (445)
+-..++..+++...|++++-+ |.+ +.|..+++.|.+.
T Consensus 160 ~~~~l~~~~gi~gtPtii~~~---G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 160 ANLALGRQLGVNGTPTIVLAD---GRV---VPGAPPAAQLEAL 196 (197)
T ss_pred HHHHHHHHcCCCcccEEEECC---CeE---ecCCCCHHHHHhh
Confidence 345677889999999997433 654 5788888777654
No 242
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=55.28 E-value=12 Score=22.95 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHhHHHhc
Q 013325 308 IENEELLQALAASMETIK 325 (445)
Q Consensus 308 ~ede~~~~al~~sl~~~~ 325 (445)
.+|+++++|++.|+...+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e 18 (26)
T smart00726 1 DEDEDLQLALELSLQEAE 18 (26)
T ss_pred ChHHHHHHHHHHhHHHhh
Confidence 368899999999998754
No 243
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=54.73 E-value=36 Score=25.31 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=34.0
Q ss_pred HHHHHhhhccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~-~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
...|+..-+| +|+ +++.--..|..||-|-+.|++..++.
T Consensus 6 rk~VQ~iKEi-v~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 6 RKTVQSIKEI-VGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHH-hcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3488899999 555 99999999999999999999988874
No 244
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=54.04 E-value=74 Score=25.79 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=31.9
Q ss_pred CCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCC-hhHH-HHHHHcCCCCCcEEEEEe
Q 013325 180 DKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEGK-KVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 180 ~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s-~eg~-~~~~~y~v~~~P~l~ii~ 248 (445)
...++||..+ ++|..|.. ++++|++ .|..+ ++.. ++.+ .+....+-.++|.|. |+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~-----------ak~lL~~~~i~~~~~--di~~~~~~~~~l~~~tg~~tvP~vf-i~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSAR-----------AVQILKACGVPFAYV--NVLEDPEIRQGIKEYSNWPTIPQLY-VK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHH-----------HHHHHHHcCCCEEEE--ECCCCHHHHHHHHHHhCCCCCCEEE-EC
Confidence 3567777765 67888877 4455554 34443 5432 3333 233445567899985 44
No 245
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=53.21 E-value=23 Score=27.03 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=33.3
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh--hHH-HHHHHcCCCCCcEEEEEe
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGK-KVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~--eg~-~~~~~y~v~~~P~l~ii~ 248 (445)
+.+..++|..|+. + +.+|..-. ++..|.++.++.+.. +.. .+.+.++..++|.+. ++
T Consensus 2 ~~f~~~~Cp~C~~-~-~~~L~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~-i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKK-A-KEILAKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF-IN 61 (84)
T ss_pred EEEECCCChhHHH-H-HHHHHHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE-EC
Confidence 3456788999988 3 23332211 222377776666432 222 366778888999984 44
No 246
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=52.53 E-value=12 Score=40.12 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=72.1
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCChhHHHHHHHcCCC
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKLD 239 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s~eg~~~~~~y~v~ 239 (445)
..+|..|+..++ |--||-+.++||..|.. |. |..+++-+. =-.+..+|.-..+...+|+.++|.
T Consensus 46 ~~tf~~~v~~~~---~~~lVEFy~swCGhCr~-FA------Ptfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 46 VDTFNAAVFGSR---KAKLVEFYNSWCGHCRA-FA------PTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred hhhhHHHhcccc---hhHHHHHHHhhhhhhhh-cc------hHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 457777777665 55678899999999998 63 445554332 245667788888899999999999
Q ss_pred CCcEEEEEeCCCCc--eeEEEecCCChHHHHHHHHhhhh
Q 013325 240 SIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 240 ~~P~l~ii~p~tg~--~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.||+|-...|..-. .=..+.|...+.++...|...+.
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999998875211 11235566667777777776665
No 247
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.52 E-value=7.3 Score=37.77 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=33.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHH-HHHHh
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEA-IQLFY 48 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~A-v~~~~ 48 (445)
.+++.+||.. |.++..++..+|.+++|++..| ...||
T Consensus 9 ~d~~~~~~~~-~~~~~~~s~~~~~~~dw~~~~~~~~s~~ 46 (260)
T KOG3077|consen 9 KDKFEQFMSF-TASRKKTSLSCLAACDWNLKYAFNDSYY 46 (260)
T ss_pred HHHHHhhccc-ccccchhhhhhhcccccccchhcccchh
Confidence 5599999999 9999999999999999999999 45554
No 248
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=51.40 E-value=40 Score=28.12 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=36.7
Q ss_pred ccEEEEEeecCChhHHHHHHHcCCCC--CcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 215 TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 215 ~~FV~~~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
....|.-+|.+.-+. .+..++++. +|.++|++...+.+-.-..+.++++.+...+..+++
T Consensus 48 gki~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 48 GAINFLTADGDKFRH--PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred ceEEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 334444334433332 778888865 999999997432322114566788877777776654
No 249
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=50.88 E-value=32 Score=27.70 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=31.0
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhc
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL 401 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~ 401 (445)
+.|+|=||||+++.-+-..+++-..||+=+...+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl 35 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKA 35 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHh
Confidence 5689999999999999999999999999987764
No 250
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=50.02 E-value=21 Score=35.20 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=35.0
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
.+|...-+. ||+..-.|++-|+.+|+|+|.||...=..+
T Consensus 7 ~~VKeLRe~-TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG 45 (296)
T COG0264 7 ALVKELREK-TGAGMMDCKKALEEANGDIEKAIEWLREKG 45 (296)
T ss_pred HHHHHHHHH-hCCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 477888889 999999999999999999999999887754
No 251
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=49.84 E-value=67 Score=26.92 Aligned_cols=52 Identities=8% Similarity=0.162 Sum_probs=36.6
Q ss_pred hHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCC
Q 013325 208 AVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 263 (445)
Q Consensus 208 ~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~ 263 (445)
++.+.....+-.+. +.......+...|++..+|+++++. .|+.++.++|..+
T Consensus 52 EL~~af~~~~~~av--v~~~~e~~L~~r~gv~~~PaLvf~R--~g~~lG~i~gi~d 103 (107)
T PF07449_consen 52 ELVKAFPGRFRGAV--VARAAERALAARFGVRRWPALVFFR--DGRYLGAIEGIRD 103 (107)
T ss_dssp HHHCTSTTSEEEEE--EEHHHHHHHHHHHT-TSSSEEEEEE--TTEEEEEEESSST
T ss_pred HHHHhhhCccceEE--ECchhHHHHHHHhCCccCCeEEEEE--CCEEEEEecCeec
Confidence 33333334555443 3356667899999999999999998 5899999998654
No 252
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=48.33 E-value=79 Score=23.91 Aligned_cols=55 Identities=5% Similarity=0.014 Sum_probs=32.0
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh-hH--HHHHHHcCCCCCcEEEEEe
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS-EG--KKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~-eg--~~~~~~y~v~~~P~l~ii~ 248 (445)
+.++.++|+.|.. + +.+|.. +...|-++.++.+.. .. ..+.+.++..++|.+ +++
T Consensus 3 ~~y~~~~Cp~C~~-~-~~~l~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKR-A-KSLLKE------LGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIG 60 (82)
T ss_pred EEEEcCCCHHHHH-H-HHHHHH------cCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 3445678999987 3 222222 222566776666543 21 235566788899998 444
No 253
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=46.13 E-value=68 Score=28.36 Aligned_cols=67 Identities=7% Similarity=-0.137 Sum_probs=40.6
Q ss_pred cCCeEEEEEe-CCCCcchhhhh-hhcccCChhHHHHhhccE-EEEEeecCChhHHH-HHHHcCCCCCcEEEEEeC
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVL-NRDTWANEAVSQTISTNF-IFWQVYDDTSEGKK-VCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~-~rdv~~~~~V~~~l~~~F-V~~~~~~~s~eg~~-~~~~y~v~~~P~l~ii~p 249 (445)
.+||++|+++ ..+++.|.. = ... -++...+|-+.++ .+++++.++....+ ++..+++. .|+-++-|+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~-e~~~~--~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~-~~f~lLsD~ 98 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSA-QHLPG--YVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAK-DKIRFLADG 98 (155)
T ss_pred CCCcEEEEEeCCCCCCCCch-hHHHH--HHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCC-CcEEEEECC
Confidence 4677777776 467887765 1 111 1222344445577 58999999988765 77777662 244455665
No 254
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=45.87 E-value=35 Score=23.20 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Q 013325 23 GQTAETAVQFLQATSWKLDEAIQLF 47 (445)
Q Consensus 23 ~~~~~~A~~~L~~~~w~le~Av~~~ 47 (445)
.....+-..+|+.||+|+=.||+.+
T Consensus 14 ~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 14 HQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCChHHHHHHHHHcCCcHHHHHHHh
Confidence 3456777889999999999999876
No 255
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=44.89 E-value=28 Score=34.68 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=33.6
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
..+|.+.-+= ||++...|++-|+.|||||..|..---.
T Consensus 47 ~allk~LR~k-Tgas~~ncKkALee~~gDl~~A~~~L~k 84 (340)
T KOG1071|consen 47 KALLKKLREK-TGASMVNCKKALEECGGDLVLAEEWLHK 84 (340)
T ss_pred HHHHHHHHHH-cCCcHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 4588899999 9999999999999999999999875554
No 256
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=44.63 E-value=1.1e+02 Score=32.82 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=55.4
Q ss_pred HHHHHHcCCeE-EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCC
Q 013325 173 KDAASVQDKWL-LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 251 (445)
Q Consensus 173 ~~~Ak~~~K~L-lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t 251 (445)
++..++-.|++ +.-+.++.|+.|.. .- ..+ .-....+.+..+. .++..+-..++..|++.+.|+++| +
T Consensus 108 ~~~i~~~~~~~~i~~fv~~~Cp~Cp~-~v-~~~---~~~a~~~~~i~~~--~id~~~~~~~~~~~~v~~VP~~~i-~--- 176 (517)
T PRK15317 108 IEQIKALDGDFHFETYVSLSCHNCPD-VV-QAL---NLMAVLNPNITHT--MIDGALFQDEVEARNIMAVPTVFL-N--- 176 (517)
T ss_pred HHHHHhcCCCeEEEEEEcCCCCCcHH-HH-HHH---HHHHHhCCCceEE--EEEchhCHhHHHhcCCcccCEEEE-C---
Confidence 34445555665 33556677998765 21 111 1122234444444 346677788999999999999975 3
Q ss_pred CceeEEEecCCChHHHHHHHHh
Q 013325 252 GQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 252 g~~~~~~~G~~~~~~~l~~L~~ 273 (445)
|+.+ +.|..+.++|++.|..
T Consensus 177 ~~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 177 GEEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred CcEE--EecCCCHHHHHHHHhc
Confidence 4443 6688888889888765
No 257
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=43.66 E-value=24 Score=36.49 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=36.6
Q ss_pred HhhcCCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCc
Q 013325 154 ASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEF 193 (445)
Q Consensus 154 ~~~f~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f 193 (445)
++.|+|-.||+---+++||++.-.++.|||.+|+-+.++-
T Consensus 334 eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n~~ 373 (477)
T KOG2456|consen 334 EEIFGPILPIITVQSLDEAINFINEREKPLALYIFSNNEK 373 (477)
T ss_pred hhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecCCHH
Confidence 6899999999999999999999999999999999876443
No 258
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=43.22 E-value=95 Score=22.23 Aligned_cols=52 Identities=6% Similarity=0.036 Sum_probs=28.3
Q ss_pred EEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc-EEEEEeecCChh--HHHHHHHcCCCCCcEEEE
Q 013325 183 LLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN-FIFWQVYDDTSE--GKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 183 LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~-FV~~~~~~~s~e--g~~~~~~y~v~~~P~l~i 246 (445)
+.||. .++|..|+. ++.+|+++ .-+..+++.... ...+....+..++|.+.+
T Consensus 2 v~ly~-~~~Cp~C~~-----------~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFS-KSTCPYCKR-----------AKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEE-CCCCHHHHH-----------HHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 33443 456888877 34444432 222333554433 344556667788998853
No 259
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=43.08 E-value=65 Score=31.81 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=65.1
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
...|.+.+..-++...-+..-+.++-|..+.. .-+.+.++.++ .+++.-+..+|....++.+..+-..-|++
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~-------RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~ 239 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQN-------RQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTY 239 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHH-------HHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHH-------HHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEE
Confidence 34566666666777666665556666665544 34567777665 67777789999999887665444344777
Q ss_pred EEEeCC--------CCceeEEEecCCChHHHHHHHHhhhh
Q 013325 245 LVVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 245 ~ii~p~--------tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.|=++. ....++...|..+|+.+++.+...|.
T Consensus 240 ~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 240 HIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp EESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred EeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 764432 12468888999999999999888775
No 260
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=42.60 E-value=95 Score=22.40 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=27.0
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCC-hh-HHHHHHHcCCCCCcEEEE
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDT-SE-GKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s-~e-g~~~~~~y~v~~~P~l~i 246 (445)
+.++.++|..|.. + ..++.+ ++-+-.++++. .+ ...+....+...+|.+.+
T Consensus 3 ~l~~~~~c~~c~~-~----------~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 3 TVYTKPDCPYCKA-T----------KRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEeCCCChhHHH-H----------HHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 4556778988876 3 233332 22222234443 22 223444446789998864
No 261
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=42.48 E-value=1.6e+02 Score=25.61 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=57.4
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE-EEE--------
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV-LVV-------- 247 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l-~ii-------- 247 (445)
.++.|.++|-+-.+++..|.. |. ++| -.+..-+++..++|.++.+ +-..+.+.|.+. -|+- .+.
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~-mD-eiL--~~~a~~v~~~a~IY~vDi~--~Vpdfn~~yel~-dP~tvmFF~rnkhm~v 89 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQ-MD-EIL--YKIAEKVKNFAVIYLVDID--EVPDFNQMYELY-DPCTVMFFFRNKHMMV 89 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHH-HH-HHH--HHHHHHHTTTEEEEEEETT--TTHCCHHHTTS--SSEEEEEEETTEEEEE
T ss_pred ccCceEEEEEeCCCCCccHHH-HH-HHH--HHHHHHhhcceEEEEEEcc--cchhhhcccccC-CCeEEEEEecCeEEEE
Confidence 467899999999999999987 53 222 2345567778999988886 444567778887 6763 333
Q ss_pred eCCCCceeEEEecC-CChHHHHHHHHhhhh
Q 013325 248 DPITGQKMRSWCGM-VQPESLLEDLVPFMD 276 (445)
Q Consensus 248 ~p~tg~~~~~~~G~-~~~~~~l~~L~~~~~ 276 (445)
|--||.- .+|.+. .+.++|+..+..+..
T Consensus 90 D~Gtgnn-nKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 90 DFGTGNN-NKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp ESSSSSS-SSBCS--SCHHHHHHHHHHHHH
T ss_pred EecCCCc-cEEEEEcCcHHHHHHHHHHHHH
Confidence 2223321 123343 367899988776654
No 262
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=42.06 E-value=75 Score=31.91 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=50.8
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcC-CCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE-GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~-~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
+|-||.=.|.+++-++..+++|..|..-|..... +|....-.|+.+ +++ | ..++|+.+.++. +.-|+|
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~--Gki--L--~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYS--GKI--L--KDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeec--cee--c--cCCcchhhhccccCceEEE
Confidence 5788999999999999999999999999988531 244444455554 443 4 568999999999 444433
No 263
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=39.87 E-value=1.4e+02 Score=31.86 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCeE-EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 171 KAKDAASVQDKWL-LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 171 eA~~~Ak~~~K~L-lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
+.++..++-.+++ +--+.++.|+.|.. . ...+ .-....+-+.... .++..+-..++..|++.+.|+++| +
T Consensus 107 ~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~-~-v~~~---~~~a~~~p~i~~~--~id~~~~~~~~~~~~v~~VP~~~i-~- 177 (515)
T TIGR03140 107 GIIDRIRRLNGPLHFETYVSLTCQNCPD-V-VQAL---NQMALLNPNISHT--MIDGALFQDEVEALGIQGVPAVFL-N- 177 (515)
T ss_pred HHHHHHHhcCCCeEEEEEEeCCCCCCHH-H-HHHH---HHHHHhCCCceEE--EEEchhCHHHHHhcCCcccCEEEE-C-
Confidence 3344445545555 33445667887765 2 1111 1222223343333 366677788999999999999975 3
Q ss_pred CCCceeEEEecCCChHHHHHHHHhh
Q 013325 250 ITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 250 ~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
|+.+ +.|..+.++|+..|...
T Consensus 178 --~~~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 178 --GEEF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred --CcEE--EecCCCHHHHHHHHhhc
Confidence 4443 66888889998888765
No 264
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=39.82 E-value=1.1e+02 Score=22.86 Aligned_cols=48 Identities=4% Similarity=-0.023 Sum_probs=27.8
Q ss_pred CCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013325 189 STKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 189 ~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 248 (445)
.++|..|.. ++.+|+++ |...-+..+...-..+...++...+|.++ ++
T Consensus 8 ~~~C~~C~k-----------a~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~-i~ 58 (73)
T cd03027 8 RLGCEDCTA-----------VRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIF-FN 58 (73)
T ss_pred cCCChhHHH-----------HHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE-EC
Confidence 356888887 45555553 55553333323234456666777899984 44
No 265
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=39.28 E-value=1.1e+02 Score=22.81 Aligned_cols=48 Identities=6% Similarity=0.036 Sum_probs=26.1
Q ss_pred eCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhH-HHHHHHcCCC-CCcEEEEEe
Q 013325 188 QSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLD-SIPVVLVVD 248 (445)
Q Consensus 188 ~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg-~~~~~~y~v~-~~P~l~ii~ 248 (445)
..++|..|.. ++.+|++ .|...-++.+ ++. ..+...++.. ++|.|. |+
T Consensus 6 ~~~~Cp~C~~-----------ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~-i~ 58 (75)
T cd03418 6 TKPNCPYCVR-----------AKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIF-IG 58 (75)
T ss_pred eCCCChHHHH-----------HHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEE-EC
Confidence 4467888877 3444444 3555433332 333 3344555655 899774 54
No 266
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=39.08 E-value=35 Score=33.94 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=32.9
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
..+.-.+.+ ||++.+.|...|+.++|++-.||-.....
T Consensus 237 ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 237 RAVRIVMEA-TGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHHH-HCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 345557888 99999999999999999999999887764
No 267
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=38.37 E-value=1.1e+02 Score=22.69 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=28.3
Q ss_pred eCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013325 188 QSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 188 ~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 248 (445)
..++|..|.. ++++|++ .|..+-++.+. ++..+...++..++|.| +|+
T Consensus 7 s~~~Cp~C~~-----------ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~i-fi~ 57 (72)
T cd03029 7 TKPGCPFCAR-----------AKAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQV-FID 57 (72)
T ss_pred ECCCCHHHHH-----------HHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeE-EEC
Confidence 3467888877 3444544 35554333222 34555556677899998 555
No 268
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=37.75 E-value=1.1e+02 Score=23.98 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=27.1
Q ss_pred EEeCCCCcchhhhhhhcccCChhHHHHhhcc------EEEEEeecCCh--hHHHHHHHcCC--CCCcEEEEEe
Q 013325 186 NLQSTKEFSSHMVLNRDTWANEAVSQTISTN------FIFWQVYDDTS--EGKKVCTYYKL--DSIPVVLVVD 248 (445)
Q Consensus 186 ~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~------FV~~~~~~~s~--eg~~~~~~y~v--~~~P~l~ii~ 248 (445)
-++.++|..|.. ++++|.+. +-+--++++.. +...+...++- .+.|.|+ |+
T Consensus 4 vys~~~Cp~C~~-----------ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i~ 64 (86)
T TIGR02183 4 IFGRPGCPYCVR-----------AKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-VD 64 (86)
T ss_pred EEeCCCCccHHH-----------HHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-EC
Confidence 344568998887 34444432 22333355421 12235555553 6899995 45
No 269
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=36.89 E-value=57 Score=30.40 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
+=.+++...++..|.+ +.++-+.-+.|+. |++..= ---..++...||=. ++ .-+..+++.+++..+|+|+++
T Consensus 73 ~Ekdf~~~~~kS~kVV-cHFY~~~f~RCKi-mDkhLe--~LAk~h~eTrFikv--na--e~~PFlv~kL~IkVLP~v~l~ 144 (211)
T KOG1672|consen 73 SEKDFFEEVKKSEKVV-CHFYRPEFFRCKI-MDKHLE--ILAKRHVETRFIKV--NA--EKAPFLVTKLNIKVLPTVALF 144 (211)
T ss_pred cHHHHHHHhhcCceEE-EEEEcCCCcceeh-HHHHHH--HHHHhcccceEEEE--ec--ccCceeeeeeeeeEeeeEEEE
Confidence 3456667777776644 5566677899998 754320 00122344456544 33 445678889999999999999
Q ss_pred eCCCCceeEEEecC
Q 013325 248 DPITGQKMRSWCGM 261 (445)
Q Consensus 248 ~p~tg~~~~~~~G~ 261 (445)
. +|..+-.+.|+
T Consensus 145 k--~g~~~D~iVGF 156 (211)
T KOG1672|consen 145 K--NGKTVDYVVGF 156 (211)
T ss_pred E--cCEEEEEEeeH
Confidence 8 58888888886
No 270
>PRK10824 glutaredoxin-4; Provisional
Probab=36.68 E-value=1.9e+02 Score=24.48 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHH-HHHHcCCCCC
Q 013325 170 EKAKDAASVQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKK-VCTYYKLDSI 241 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~-~~~~y~v~~~ 241 (445)
.+.++...++ ..++|+..+ +.|+.|.. ++++|++ .|-.+-++.+ ++-+. +.+.-+-.++
T Consensus 5 ~~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~-----------ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TV 71 (115)
T PRK10824 5 IEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQ-----------AVQALSACGERFAYVDILQN-PDIRAELPKYANWPTF 71 (115)
T ss_pred HHHHHHHHhc-CCEEEEECCCCCCCCCchHHH-----------HHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCC
Confidence 3445555555 456677776 57988877 3334433 3444433332 33222 3334455688
Q ss_pred cEEEE
Q 013325 242 PVVLV 246 (445)
Q Consensus 242 P~l~i 246 (445)
|-|+|
T Consensus 72 PQIFI 76 (115)
T PRK10824 72 PQLWV 76 (115)
T ss_pred CeEEE
Confidence 88875
No 271
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=35.99 E-value=2.2e+02 Score=22.63 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=37.9
Q ss_pred cCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHH
Q 013325 204 WANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 268 (445)
Q Consensus 204 ~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l 268 (445)
+.+..+.+++...++....+..-.++..+...++....+.+.+++. .|+.+ |.++..+++
T Consensus 58 ~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~----Gvvs~~di~ 117 (119)
T cd04598 58 YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYL----GIGTVKDLL 117 (119)
T ss_pred HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEE----EEEEHHHHh
Confidence 3455688888888888765555566777766666555555556663 46555 545555554
No 272
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=35.73 E-value=55 Score=32.01 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=33.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
+..+.-.|++ ||++.++|.++|+.++.++-.||=+....-
T Consensus 234 dRa~RIv~~a-T~~~~~~A~~~L~~~~~~vK~AIvm~~~~~ 273 (298)
T COG2103 234 DRAVRIVMEA-TGCSAEEAEALLEEAGGNVKLAIVMLLTGL 273 (298)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCccHhHHHHHHhCC
Confidence 4456667888 999999999999999999999998888743
No 273
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=35.46 E-value=1e+02 Score=23.29 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=27.2
Q ss_pred CCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013325 189 STKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 189 ~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 248 (445)
.++|..|.. +++++++ .|-..-++.+......+....+..++|.|. |+
T Consensus 6 ~~~Cp~C~~-----------a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~-i~ 56 (79)
T TIGR02181 6 KPYCPYCTR-----------AKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF-IG 56 (79)
T ss_pred cCCChhHHH-----------HHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE-EC
Confidence 467888877 3444444 244443333322334455566778899984 44
No 274
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=34.83 E-value=46 Score=33.02 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=33.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
+..+.-.+.+ ||++.+.|..+|+.++|++-.||=+....
T Consensus 231 ~Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 231 ARAVRIVRQA-TDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3345556888 99999999999999999999999887764
No 275
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=34.81 E-value=1.1e+02 Score=30.56 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=67.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
....|.+.+...++...=+-|...++-|..+.. .-+.+.++.++ ..++.-+..+|....++++..+-..-|+
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~-------RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t 239 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQN-------RQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPA 239 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHH-------HHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCE
Confidence 345666666666654433333224444444332 33567777764 6777778888988888766554334455
Q ss_pred EEEEeCC-------CC-ceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 244 VLVVDPI-------TG-QKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 244 l~ii~p~-------tg-~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+.|=++. .| ..++...|..+|+.+++.+...|...
T Consensus 240 ~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 240 YLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred EEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5553321 12 36788889999999999999888764
No 276
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=34.67 E-value=1.1e+02 Score=32.38 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=52.7
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
..++|.||.|++ +..-.-..+.+|+.+.+-|.... +.+...-.|+.. +|+ | +.+.||...|+. +-+|.++
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f-~a~~dqlvLIfa--GrI--L--KD~dTL~~~gI~Dg~TvHLV 84 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF-GAPPDQLVLIYA--GRI--L--KDDDTLKQYGIQDGHTVHLV 84 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhc-CCChhHeeeeec--Ccc--c--cChhhHHHcCCCCCcEEEEE
Confidence 479999999999 56667778889999999887754 545666666654 664 5 467899999998 5666554
No 277
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=86 Score=29.32 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=35.4
Q ss_pred hHHHHHHHcCCCCCcEEEEEeCCCCceeEEEec--CCChHHHHHHHHhhhh
Q 013325 228 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG--MVQPESLLEDLVPFMD 276 (445)
Q Consensus 228 eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G--~~~~~~~l~~L~~~~~ 276 (445)
+++.+++...+..||++++.. +|++-..=.| +.+++.++..|.+.+.
T Consensus 162 ~~r~l~~rlg~~GfPTl~le~--ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 162 DSRRLMQRLGAAGFPTLALER--NGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHHhccCCCCeeeeee--CCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 457889999999999999999 5653222346 4688999998877653
No 278
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=31.49 E-value=52 Score=36.12 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=36.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
++.|+..+++ |-+..+|+.-|.+.|.|||.||+=+|+..+
T Consensus 636 e~~v~si~sm--Gf~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 636 EESVASIVSM--GFSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred hhHheeeeee--cCcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 4477788888 999999999999999999999999999876
No 279
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=30.51 E-value=56 Score=32.45 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
+..+.-.+.+ ||++.+.|...|+.++|++-.||=+....
T Consensus 232 ~Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~ai~~~~~~ 270 (296)
T PRK12570 232 ARAVRIVMQA-TGCSEDEAKELLKESDNDVKLAILMILTG 270 (296)
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHhCCccHHHHHHHHhC
Confidence 3345556888 89999999999999999999999887664
No 280
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=30.31 E-value=2.4e+02 Score=21.79 Aligned_cols=79 Identities=15% Similarity=0.030 Sum_probs=46.7
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHH-hhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCC
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQT-ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 262 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~-l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~ 262 (445)
|+.++.+.|.-|.. . -..+..+ ....|-+-.+|+++.+. +...|+. ..|.+.+-++++........+.+
T Consensus 2 l~l~~k~~C~LC~~-a------~~~L~~~~~~~~~~l~~vDI~~d~~--l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~ 71 (81)
T PF05768_consen 2 LTLYTKPGCHLCDE-A------KEILEEVAAEFPFELEEVDIDEDPE--LFEKYGY-RIPVLHIDGIRQFKEQEELKWRF 71 (81)
T ss_dssp EEEEE-SSSHHHHH-H------HHHHHHCCTTSTCEEEEEETTTTHH--HHHHSCT-STSEEEETT-GGGCTSEEEESSB
T ss_pred EEEEcCCCCChHHH-H------HHHHHHHHhhcCceEEEEECCCCHH--HHHHhcC-CCCEEEEcCcccccccceeCCCC
Confidence 34456667776655 2 1222332 23458888888885443 6778985 79998887754322244456778
Q ss_pred ChHHHHHHHH
Q 013325 263 QPESLLEDLV 272 (445)
Q Consensus 263 ~~~~~l~~L~ 272 (445)
+.+.+.+.|+
T Consensus 72 d~~~L~~~L~ 81 (81)
T PF05768_consen 72 DEEQLRAWLE 81 (81)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 8888877663
No 281
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=30.28 E-value=2e+02 Score=22.24 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=34.7
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCC--hhHHHHHHHcC--CCCCcEEEEEeCCCCce
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDT--SEGKKVCTYYK--LDSIPVVLVVDPITGQK 254 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s--~eg~~~~~~y~--v~~~P~l~ii~p~tg~~ 254 (445)
+-+..++|..|.. ++++|++ ++-+--++++. .+...+...++ +.++|.|+ |+ |+.
T Consensus 4 ~iy~~~~C~~C~~-----------a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if-i~---g~~ 68 (85)
T PRK11200 4 VIFGRPGCPYCVR-----------AKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF-VD---QKH 68 (85)
T ss_pred EEEeCCCChhHHH-----------HHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE-EC---CEE
Confidence 3344567998877 3444443 33233334443 22334444444 47899986 44 554
Q ss_pred eEEEecCCChHHHHHHHHh
Q 013325 255 MRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~ 273 (445)
+ -|+ +++.+.+..
T Consensus 69 i---gg~---~~~~~~~~~ 81 (85)
T PRK11200 69 I---GGC---TDFEAYVKE 81 (85)
T ss_pred E---cCH---HHHHHHHHH
Confidence 3 343 455544443
No 282
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=29.39 E-value=1.7e+02 Score=28.82 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=64.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
...|.+.+...++..--.=+-+.++-|..++. .-+.+.++.++ ..++.-+..+|....++.+...-..-|++
T Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~-------RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~ 238 (280)
T TIGR00216 166 QEDTKEIVAELKARVPQKEVPVFNTICYATQN-------RQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSY 238 (280)
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCCCcccccHH-------HHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEE
Confidence 34555555555543300112233444444433 33567777764 67777788999998887665554445666
Q ss_pred EEEeCC--------CCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 245 LVVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 245 ~ii~p~--------tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
.|=++. ..+.++...|..+|+.+++.+...|..
T Consensus 239 ~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 239 LIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred EECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 653332 124678888999999999998887753
No 283
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=29.37 E-value=3.8e+02 Score=27.41 Aligned_cols=94 Identities=17% Similarity=0.241 Sum_probs=56.2
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhH----HHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCC
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAV----SQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 250 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V----~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~ 250 (445)
+.+..+.|.||.|.+.. .... .-+..-..+.| .+.+.. .+=|. -+++..-.++++.+++..-++|.|..
T Consensus 47 ~lKkyd~l~l~yh~p~~-~dk~-~qkq~~m~E~~LELaAQVlE~~gigfg--~VD~~Kd~klAKKLgv~E~~SiyVfk-- 120 (383)
T PF01216_consen 47 ALKKYDVLVLYYHEPVE-SDKV-SQKQFQMTELVLELAAQVLEDKGIGFG--MVDSKKDAKLAKKLGVEEEGSIYVFK-- 120 (383)
T ss_dssp HHHH-SEEEEEEE--ST-SSHH-HHHHHHHHHHHHHHHHHHCGGCTEEEE--EEETTTTHHHHHHHT--STTEEEEEE--
T ss_pred HHHhhcEEEEEEecCCc-cCHH-HHHHHHHHHHHHHHHHHhccccCcceE--EeccHHHHHHHHhcCccccCcEEEEE--
Confidence 55678899999998632 1111 22222122323 333433 34444 34556667899999999999999987
Q ss_pred CCceeEEEecCCChHHHHHHHHhhhh
Q 013325 251 TGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 251 tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.|+++. ..|..+++.|++.|...++
T Consensus 121 d~~~IE-ydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 121 DGEVIE-YDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp TTEEEE-E-S--SHHHHHHHHHHHHS
T ss_pred CCcEEE-ecCccCHHHHHHHHHHhcc
Confidence 477664 4699999999999999887
No 284
>PHA03050 glutaredoxin; Provisional
Probab=28.87 E-value=2.8e+02 Score=22.99 Aligned_cols=55 Identities=4% Similarity=-0.039 Sum_probs=31.0
Q ss_pred CeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecC--ChhH-HHHHHHcCCCCCcEEEEEe
Q 013325 181 KWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDD--TSEG-KKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 181 K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~--s~eg-~~~~~~y~v~~~P~l~ii~ 248 (445)
..+.||-. ++|+.|.. ++++|++ .|-.+-++.. ..+. ..+....+-.+.|.|+ |+
T Consensus 13 ~~V~vys~-~~CPyC~~-----------ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If-I~ 76 (108)
T PHA03050 13 NKVTIFVK-FTCPFCRN-----------ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF-FG 76 (108)
T ss_pred CCEEEEEC-CCChHHHH-----------HHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE-EC
Confidence 44556555 46999987 4555554 3445533331 2222 2345556677899994 44
No 285
>PTZ00062 glutaredoxin; Provisional
Probab=28.62 E-value=2.6e+02 Score=26.13 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=32.3
Q ss_pred cCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecC-ChhHHHH-HHHcCCCCCcEEEE
Q 013325 179 QDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDD-TSEGKKV-CTYYKLDSIPVVLV 246 (445)
Q Consensus 179 ~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~-s~eg~~~-~~~y~v~~~P~l~i 246 (445)
..++++|+..+ +.|..|+. ++++|++ .|..+ ++. ..+.+.. ....+-.++|.|.|
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~-----------~k~~L~~~~i~y~~~--DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNA-----------VVNMLNSSGVKYETY--NIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHH-----------HHHHHHHcCCCEEEE--EcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 44677888875 45666655 5667765 35544 443 3444333 33445567898874
No 286
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.45 E-value=97 Score=31.98 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=38.9
Q ss_pred CChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 5 l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
++..+.+..|.+.|+| |-+.+....-|.++=+|-|.||+.-+.+
T Consensus 151 ~~g~~~e~~I~~i~eM--Gf~R~qV~~ALRAafNNPdRAVEYL~tG 194 (378)
T TIGR00601 151 VVGSERETTIEEIMEM--GYEREEVERALRAAFNNPDRAVEYLLTG 194 (378)
T ss_pred ccchHHHHHHHHHHHh--CCCHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 3445667899999999 8999999999999999999999988775
No 287
>PRK10638 glutaredoxin 3; Provisional
Probab=28.13 E-value=1.9e+02 Score=22.18 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=27.2
Q ss_pred eCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCChh--HHHHHHHcCCCCCcEEEEEe
Q 013325 188 QSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDTSE--GKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 188 ~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s~e--g~~~~~~y~v~~~P~l~ii~ 248 (445)
..++|..|+. ++.+|+++ |... +++... ...+.+..+..++|.| +++
T Consensus 8 ~~~~Cp~C~~-----------a~~~L~~~gi~y~~~--dv~~~~~~~~~l~~~~g~~~vP~i-~~~ 59 (83)
T PRK10638 8 TKATCPFCHR-----------AKALLNSKGVSFQEI--PIDGDAAKREEMIKRSGRTTVPQI-FID 59 (83)
T ss_pred ECCCChhHHH-----------HHHHHHHcCCCcEEE--ECCCCHHHHHHHHHHhCCCCcCEE-EEC
Confidence 3466888877 45555543 4444 443322 2345566677889987 444
No 288
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.85 E-value=1.9e+02 Score=28.54 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=63.4
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
...|.+.+...++...=+.+ .++-|..++. ..+.+.++-++ .+++.-+..+|....++++...-..-|++
T Consensus 169 ~~~~~~iv~~l~~~~~~~~v--~~TIC~aT~~-------RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~ 239 (281)
T PRK12360 169 PELWEDILNVIKLKSKELVF--FNTICSATKK-------RQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTF 239 (281)
T ss_pred HHHHHHHHHHHHHhCccccc--CCCcchhhhh-------HHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEE
Confidence 45566666666655544433 3444443332 33567777653 67777778889888877654433334555
Q ss_pred EEEeCC-------CC-ceeEEEecCCChHHHHHHHHhhhh
Q 013325 245 LVVDPI-------TG-QKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 245 ~ii~p~-------tg-~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.|=++. .| ..++...|..+|+.+++.+...|.
T Consensus 240 ~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~ 279 (281)
T PRK12360 240 HIETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIK 279 (281)
T ss_pred EECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 553322 11 357888899999999999888775
No 289
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=27.29 E-value=2.2e+02 Score=21.74 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=28.2
Q ss_pred eCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCC-hhHHHHHHHcCCCCCcEEEE
Q 013325 188 QSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 188 ~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s-~eg~~~~~~y~v~~~P~l~i 246 (445)
..++|..|.. ++++|.+ .|... +++. .++..+...++..++|.|.+
T Consensus 14 ~~~~Cp~C~~-----------ak~~L~~~gi~y~~i--di~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 14 TKPGCPFCAK-----------AKATLKEKGYDFEEI--PLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred ECCCCHhHHH-----------HHHHHHHcCCCcEEE--ECCCChHHHHHHHHHCCCCcCeEEE
Confidence 4467998887 4445554 34443 4432 34555666677889999963
No 290
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=26.12 E-value=1.5e+02 Score=27.67 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=31.3
Q ss_pred cCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 236 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 236 y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|.+.+-..+.+|++ .|..+..+.+...+++++..|+..+.
T Consensus 166 y~~~Hs~~~~lid~-~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 166 YTIDHSAGFYLIDA-DGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred ceeeeeeEEEEECC-CCeEEEEecCCCChHHHHHHHHHHhh
Confidence 33445567888997 59988888877779999999988775
No 291
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.48 E-value=1.6e+02 Score=21.94 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=49.7
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 441 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~ 441 (445)
.|.+++-.|+.+.--.-.+|+|..+-+-|+.+ .|.++..-+|+.. .+. + ..++|-+..++...+|+
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEk-eGIPp~qqrli~~--gkq--m--~DD~tA~~Y~~~~GSVl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-EGIPPQQQRLIYA--GKQ--M--NDDKTAAHYNLLGGSVL 67 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhh-cCCCchhhhhhhc--ccc--c--cccccHHHhhhccceeE
Confidence 46788889999999999999999999999886 3555555555432 442 2 45789999998866654
No 292
>PRK10329 glutaredoxin-like protein; Provisional
Probab=25.11 E-value=2.8e+02 Score=21.51 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=35.9
Q ss_pred eCCCCcchhhhhhhcccCChhHHHHhhcc-EEEEEeecC-ChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChH
Q 013325 188 QSTKEFSSHMVLNRDTWANEAVSQTISTN-FIFWQVYDD-TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPE 265 (445)
Q Consensus 188 ~~~~~f~~~~~~~rdv~~~~~V~~~l~~~-FV~~~~~~~-s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~ 265 (445)
..++|..|+. ++.+|.++ +-|--++++ .+++.......+....|.+.+ + + ..|.|+ .++
T Consensus 7 t~~~Cp~C~~-----------ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~---~---~~~~Gf-~~~ 67 (81)
T PRK10329 7 TRNDCVQCHA-----------TKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-G---D---LSWSGF-RPD 67 (81)
T ss_pred eCCCCHhHHH-----------HHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-C---C---EEEecC-CHH
Confidence 3467888877 45566553 222233554 344555555567789999954 3 2 246674 555
Q ss_pred HHHH
Q 013325 266 SLLE 269 (445)
Q Consensus 266 ~~l~ 269 (445)
.+.+
T Consensus 68 ~l~~ 71 (81)
T PRK10329 68 MINR 71 (81)
T ss_pred HHHH
Confidence 5544
No 293
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=25.02 E-value=1.1e+02 Score=21.30 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 209 VSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 209 V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
|.+++..+++...-+..-.++......++ +.++.|++. .|+.+ |.++..+++..|.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~---~~~~~V~d~-~~~~~----G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNG---ISRLPVVDE-DGKLV----GIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHT---SSEEEEEST-TSBEE----EEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcC---CcEEEEEec-CCEEE----EEEEHHHHHhhhh
Confidence 45677778888865655566666666664 677778874 35555 5556677776553
No 294
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=24.52 E-value=2.3e+02 Score=23.58 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHHHhh-ccEEEEEeecCChhHHHHHHHcCCC--C--CcEEEEEeCCCCceeEEEecCC-ChHHHHHHHHhh
Q 013325 209 VSQTIS-TNFIFWQVYDDTSEGKKVCTYYKLD--S--IPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPF 274 (445)
Q Consensus 209 V~~~l~-~~FV~~~~~~~s~eg~~~~~~y~v~--~--~P~l~ii~p~tg~~~~~~~G~~-~~~~~l~~L~~~ 274 (445)
|.+-.+ ..++|.-+|. .+...+...+++. . +|.++|++. .+.+ ....+.+ +++.+.+.+..+
T Consensus 43 vAk~fk~gki~Fv~~D~--~~~~~~l~~fgl~~~~~~~P~~~i~~~-~~~K-Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 43 VAKDFPDRKLNFAVADK--EDFSHELEEFGLDFSGGEKPVVAIRTA-KGKK-YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHCcCCeEEEEEEcH--HHHHHHHHHcCCCcccCCCCEEEEEeC-CCCc-cCCCcccCCHHHHHHHHHHh
Confidence 444455 3555543344 3433477889986 4 999999985 3322 1245556 777766655544
No 295
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=1.1e+02 Score=25.46 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=36.6
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcC----CCCCcEEEE
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK----LDSIPVVLV 246 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~----v~~~P~l~i 246 (445)
..+++|+-- ++|..|+. + +.+|.+ +.-++.++.+|.+ ++|..+-..+. -.++|.|+|
T Consensus 13 ~~~VVifSK-s~C~~c~~-~-k~ll~~------~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 13 ENPVVIFSK-SSCPYCHR-A-KELLSD------LGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred cCCEEEEEC-CcCchHHH-H-HHHHHh------CCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEE
Confidence 345666655 67998987 3 455544 5557788877776 66665544432 358999885
No 296
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=23.93 E-value=2.4e+02 Score=21.78 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=34.9
Q ss_pred EEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC
Q 013325 370 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 414 (445)
Q Consensus 370 I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~ 414 (445)
+.+=||||++..=.-.+..||.++..=+-.+ .+.....+.|...
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~k-r~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKK-RGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHH-cCCCHHHEEEEEe
Confidence 4677999999999999999999998876554 4666667766654
No 297
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.18 E-value=2.2e+02 Score=24.48 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeC--------CCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChh
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQS--------TKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSE 228 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~--------~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~e 228 (445)
.+|+++++.-.+..+ ++|++.+ +||.+|-. .-|.|-+-++ ++..|..+++.+.+
T Consensus 13 e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCPdCV~-------AEPvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 13 ESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCPDCVA-------AEPVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred HHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCchHHH-------hhHHHHHHHHhCCCceEEEEEEecCCC
Confidence 467777777666666 7777654 46777755 4556666676 34555555665543
No 298
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.82 E-value=4.2e+02 Score=21.51 Aligned_cols=98 Identities=16% Similarity=0.122 Sum_probs=49.6
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcc----hhhhhhh-----------cccCChhHHHHhhccEEEEEeec---CCh
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFS----SHMVLNR-----------DTWANEAVSQTISTNFIFWQVYD---DTS 227 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~----~~~~~~r-----------dv~~~~~V~~~l~~~FV~~~~~~---~s~ 227 (445)
..+..+|+..-...+.+.++.+.+...+- -.- +.+ ..+.+..|.++++.+++....+. ...
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~d-l~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~ 87 (126)
T cd04640 9 DTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVD-LLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENA 87 (126)
T ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHH-HhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccC
Confidence 34777888776555544444444333321 111 111 12344558888887765443221 122
Q ss_pred hHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHH
Q 013325 228 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 268 (445)
Q Consensus 228 eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l 268 (445)
........+.-..++++.|++-..|.++ |.++..+++
T Consensus 88 ~l~~~l~~m~~~~~~~lpVvd~~~~~~~----G~it~~di~ 124 (126)
T cd04640 88 SVGDVVETLKASGRQHALVVDREHHQIR----GIISTSDIA 124 (126)
T ss_pred cHHHHHHHHHHCCCceEEEEECCCCEEE----EEEeHHHHh
Confidence 2233444444456788888984313444 555555554
No 299
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=45 Score=31.68 Aligned_cols=77 Identities=13% Similarity=0.284 Sum_probs=53.1
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEE
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 258 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~ 258 (445)
.++.++++++..|+..|.. |+ +|+ +.+..+. .+..+...+. .+-..+++.+.+..-|+..++. .|+.+.++
T Consensus 16 ~~~~~~~~f~a~wa~~~~q-~~-~v~--~~~~~~~-~~~~~~k~~a--~~~~eis~~~~v~~vp~~~~~~--~~~~v~~l 86 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQ-MD-QVF--DHLAEYF-KNAQFLKLEA--EEFPEISNLIAVEAVPYFVFFF--LGEKVDRL 86 (227)
T ss_pred ccchhhhhhhhhhhhhhhh-HH-HHH--HHHHHhh-hhheeeeehh--hhhhHHHHHHHHhcCceeeeee--cchhhhhh
Confidence 7889999999999999988 62 332 2233333 4555554333 3345678889999999998886 47788888
Q ss_pred ecCCCh
Q 013325 259 CGMVQP 264 (445)
Q Consensus 259 ~G~~~~ 264 (445)
.|...+
T Consensus 87 ~~~~~~ 92 (227)
T KOG0911|consen 87 SGADPP 92 (227)
T ss_pred hccCcH
Confidence 886443
No 300
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=21.95 E-value=2.5e+02 Score=20.83 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=32.7
Q ss_pred eCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCC-hhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCC
Q 013325 188 QSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 263 (445)
Q Consensus 188 ~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s-~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~ 263 (445)
..++|..|+. ++++|.++ |-.. +++. ++........+..++|.+. ++ |. ..|.| .+
T Consensus 5 ~~~~Cp~C~~-----------ak~~L~~~~i~~~~~--di~~~~~~~~~~~~~g~~~vP~v~-~~---g~--~~~~G-~~ 64 (72)
T TIGR02194 5 SKNNCVQCKM-----------TKKALEEHGIAFEEI--NIDEQPEAIDYVKAQGFRQVPVIV-AD---GD--LSWSG-FR 64 (72)
T ss_pred eCCCCHHHHH-----------HHHHHHHCCCceEEE--ECCCCHHHHHHHHHcCCcccCEEE-EC---CC--cEEec-cC
Confidence 3456888877 45555543 4444 4433 3444444445777899974 43 32 14566 45
Q ss_pred hHHH
Q 013325 264 PESL 267 (445)
Q Consensus 264 ~~~~ 267 (445)
++.+
T Consensus 65 ~~~~ 68 (72)
T TIGR02194 65 PDKL 68 (72)
T ss_pred HHHH
Confidence 5544
No 301
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=21.31 E-value=1.4e+02 Score=21.75 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=19.1
Q ss_pred CCceEEEEE-CCCCceEEEeeCCCCch
Q 013325 365 SLLCRVGVR-LPDGRRMQRNFLRTDPI 390 (445)
Q Consensus 365 ~~~~~I~iR-lP~G~r~~rrF~~~d~l 390 (445)
...+++.+| |-+|+.+.++|.++|+|
T Consensus 32 ~a~v~~klknl~tG~~~e~tf~s~d~v 58 (58)
T PF08207_consen 32 GAFVRVKLKNLRTGSKVEKTFRSGDKV 58 (58)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred CeEEEEEEEECCCCCEEEEEECCCCcC
Confidence 445666655 57899999999999874
No 302
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=20.95 E-value=1.8e+02 Score=23.59 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=30.6
Q ss_pred CeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecC-ChhHHHH----HHHcCCCCCcEEEEEe
Q 013325 181 KWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDD-TSEGKKV----CTYYKLDSIPVVLVVD 248 (445)
Q Consensus 181 K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~-s~eg~~~----~~~y~v~~~P~l~ii~ 248 (445)
.++.||-. ++|+.|.. ++++|+++ |-.+ +++ .+++..+ ....+..++|.| +|+
T Consensus 8 ~~Vvvysk-~~Cp~C~~-----------ak~~L~~~~i~~~~v--did~~~~~~~~~~~l~~~tg~~tvP~V-fi~ 68 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHV-----------VKRLLLTLGVNPAVH--EIDKEPAGKDIENALSRLGCSPAVPAV-FVG 68 (99)
T ss_pred CCEEEEEC-CCCHHHHH-----------HHHHHHHcCCCCEEE--EcCCCccHHHHHHHHHHhcCCCCcCeE-EEC
Confidence 34556655 67998887 34455543 4444 443 3455443 334456789998 455
No 303
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=20.92 E-value=2.1e+02 Score=22.46 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=29.8
Q ss_pred EECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEE
Q 013325 372 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRL 411 (445)
Q Consensus 372 iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L 411 (445)
|=||||.+.+=.-....++.++.+-+-. ..++++..+-|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk-~~~ldp~eh~L 42 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACK-RKQLDPMEHYL 42 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHH-hcCCChhHhee
Confidence 5689999999999999999999987544 34555555434
No 304
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=20.07 E-value=2.9e+02 Score=23.89 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=26.8
Q ss_pred ChhHHHHHHHcCC--CCCcEEEEEeCCCCceeEEE--ecCCChHHHHHHHH
Q 013325 226 TSEGKKVCTYYKL--DSIPVVLVVDPITGQKMRSW--CGMVQPESLLEDLV 272 (445)
Q Consensus 226 s~eg~~~~~~y~v--~~~P~l~ii~p~tg~~~~~~--~G~~~~~~~l~~L~ 272 (445)
..+...++..|++ ..||.+.+.- ...+-.-.. .|.++.+.+...+.
T Consensus 67 ek~N~~Laery~i~ke~fPv~~LF~-~~~~~pv~~p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 67 EKENMELAERYKIDKEDFPVIYLFV-GDKEEPVRYPFDGDVTADNLQRFVK 116 (126)
T ss_dssp S-CCHHHHHHTT-SCCC-SEEEEEE-SSTTSEEEE-TCS-S-HHHHHHHHH
T ss_pred chhHHHHHHHhCCCcccCCEEEEec-CCCCCCccCCccCCccHHHHHHHHH
Confidence 3566789999999 5699998877 333323334 67777776655444
Done!