Query 013325
Match_columns 445
No_of_seqs 318 out of 1252
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ec4_A FAS-associated factor 1 99.9 9.3E-28 3.2E-32 218.9 13.3 129 150-279 21-171 (178)
2 2dlx_A UBX domain-containing p 99.9 3.2E-27 1.1E-31 210.4 13.3 132 146-279 8-139 (153)
3 2cr5_A Reproduction 8; UBX dom 99.9 1.7E-21 5.8E-26 163.3 12.1 88 352-443 8-95 (109)
4 2dzk_A UBX domain-containing p 99.8 1.5E-18 5.2E-23 145.2 11.4 84 360-445 6-90 (109)
5 3qx1_A FAS-associated factor 1 99.8 2.2E-18 7.4E-23 137.7 10.3 75 365-442 5-79 (84)
6 1s3s_G P47 protein; AAA ATPase 99.8 1.1E-18 3.6E-23 150.1 8.7 78 365-445 50-127 (127)
7 1wj4_A KIAA0794 protein; UBX d 99.7 2.3E-17 7.8E-22 141.0 10.2 81 360-444 36-118 (124)
8 3f9u_A Putative exported cytoc 99.3 1E-11 3.4E-16 111.2 10.1 113 164-278 31-168 (172)
9 2kuc_A Putative disulphide-iso 99.3 5.8E-11 2E-15 100.7 13.1 112 164-277 11-122 (130)
10 2dal_A Protein KIAA0794; FAS a 99.2 1.6E-11 5.5E-16 91.7 6.5 49 3-53 9-57 (62)
11 3ph9_A Anterior gradient prote 99.2 1.9E-11 6.5E-16 108.1 7.7 111 163-278 27-147 (151)
12 3e21_A HFAF1, FAS-associated f 99.2 4E-12 1.4E-16 87.8 2.3 42 7-49 2-44 (45)
13 2ju5_A Thioredoxin disulfide i 99.2 2.4E-10 8.2E-15 100.7 13.9 107 167-276 34-152 (154)
14 1v92_A NSFL1 cofactor P47; 3-h 99.2 1.7E-11 5.9E-16 86.0 4.8 41 10-51 5-45 (46)
15 2dam_A ETEA protein; KIAA0887, 99.2 2.6E-11 9E-16 91.8 5.8 49 3-53 12-61 (67)
16 2lst_A Thioredoxin; structural 98.8 2.4E-12 8.2E-17 109.5 0.0 109 170-279 9-119 (130)
17 3ira_A Conserved protein; meth 99.1 1.1E-10 3.9E-15 105.3 9.5 110 165-278 24-146 (173)
18 3fk8_A Disulphide isomerase; A 99.0 1.6E-09 5.5E-14 92.3 10.6 105 167-274 16-131 (133)
19 2dzl_A Protein FAM100B; UBA-li 99.0 4.9E-10 1.7E-14 84.4 5.4 40 12-52 19-58 (66)
20 2fwh_A Thiol:disulfide interch 99.0 2.7E-09 9.1E-14 91.5 10.4 113 159-276 11-128 (134)
21 1ep7_A Thioredoxin CH1, H-type 98.7 1.5E-07 5E-12 77.0 11.1 101 167-276 11-111 (112)
22 2l57_A Uncharacterized protein 98.7 1.2E-07 4.3E-12 79.6 10.3 98 176-278 22-119 (126)
23 1xfl_A Thioredoxin H1; AT3G510 98.6 2.9E-07 1E-11 77.6 11.8 98 166-275 24-123 (124)
24 2voc_A Thioredoxin; electron t 98.6 4.5E-07 1.5E-11 74.7 12.2 101 165-278 7-107 (112)
25 3tco_A Thioredoxin (TRXA-1); d 98.6 2.6E-07 9E-12 74.8 10.3 99 165-275 10-108 (109)
26 3qfa_C Thioredoxin; protein-pr 98.6 3E-07 1E-11 76.5 10.6 101 160-274 13-115 (116)
27 3die_A Thioredoxin, TRX; elect 98.6 5.9E-07 2E-11 72.4 11.2 97 165-274 9-105 (106)
28 2vlu_A Thioredoxin, thioredoxi 98.5 5.5E-07 1.9E-11 75.0 11.2 106 161-276 15-120 (122)
29 2vm1_A Thioredoxin, thioredoxi 98.5 4.5E-07 1.5E-11 74.7 10.4 101 165-277 13-115 (118)
30 1nsw_A Thioredoxin, TRX; therm 98.5 3.2E-07 1.1E-11 74.1 9.2 93 175-275 12-104 (105)
31 1w4v_A Thioredoxin, mitochondr 98.5 5.6E-07 1.9E-11 75.0 10.9 98 170-275 21-118 (119)
32 3gnj_A Thioredoxin domain prot 98.5 8.6E-07 2.9E-11 72.1 11.9 91 178-276 20-110 (111)
33 3dml_A Putative uncharacterize 98.5 8.7E-08 3E-12 80.5 5.8 95 180-278 18-112 (116)
34 2yzu_A Thioredoxin; redox prot 98.5 8.1E-07 2.8E-11 71.7 11.4 98 167-276 9-106 (109)
35 3zzx_A Thioredoxin; oxidoreduc 98.5 5.4E-07 1.8E-11 74.1 10.2 91 168-272 10-102 (105)
36 2i4a_A Thioredoxin; acidophIle 98.5 8.7E-07 3E-11 71.5 11.3 97 167-274 10-106 (107)
37 1thx_A Thioredoxin, thioredoxi 98.5 7.5E-07 2.6E-11 72.9 11.0 99 167-276 15-113 (115)
38 1ti3_A Thioredoxin H, PTTRXH1; 98.5 4.6E-07 1.6E-11 74.0 9.6 99 166-276 12-112 (113)
39 3d22_A TRXH4, thioredoxin H-ty 98.5 6.3E-07 2.2E-11 76.5 10.8 101 165-277 31-133 (139)
40 1dby_A Chloroplast thioredoxin 98.5 9.2E-07 3.1E-11 71.6 11.0 94 174-275 13-106 (107)
41 2trx_A Thioredoxin; electron t 98.5 1E-06 3.4E-11 71.5 11.0 98 167-275 10-107 (108)
42 2e0q_A Thioredoxin; electron t 98.5 1.9E-06 6.5E-11 68.8 11.9 98 166-276 6-103 (104)
43 3p2a_A Thioredoxin 2, putative 98.5 1.4E-06 5E-11 75.3 11.8 102 165-278 44-145 (148)
44 3ul3_B Thioredoxin, thioredoxi 98.5 6.8E-07 2.3E-11 75.5 9.4 91 175-273 37-127 (128)
45 1t00_A Thioredoxin, TRX; redox 98.4 8.6E-07 2.9E-11 72.5 9.3 92 177-276 20-111 (112)
46 2dml_A Protein disulfide-isome 98.4 9.8E-07 3.3E-11 74.3 9.8 103 166-278 24-126 (130)
47 2i1u_A Thioredoxin, TRX, MPT46 98.4 7E-07 2.4E-11 74.0 8.6 93 175-275 25-117 (121)
48 3f3q_A Thioredoxin-1; His TAG, 98.4 1.9E-06 6.3E-11 70.7 10.9 90 173-274 17-108 (109)
49 3hxs_A Thioredoxin, TRXP; elec 98.4 1.7E-06 5.7E-11 74.0 11.0 90 179-276 50-139 (141)
50 1xwb_A Thioredoxin; dimerizati 98.4 3.4E-06 1.1E-10 67.8 12.3 96 168-274 10-105 (106)
51 3hz4_A Thioredoxin; NYSGXRC, P 98.4 1.2E-06 4.2E-11 75.2 10.1 102 168-277 12-113 (140)
52 2o8v_B Thioredoxin 1; disulfid 98.4 8.2E-07 2.8E-11 75.3 8.9 98 167-275 30-127 (128)
53 1fb6_A Thioredoxin M; electron 98.4 1.1E-06 3.6E-11 70.7 9.1 97 167-274 8-104 (105)
54 4euy_A Uncharacterized protein 98.4 1.1E-06 3.8E-11 71.3 9.1 87 178-275 16-104 (105)
55 1x5d_A Protein disulfide-isome 98.4 1.4E-06 4.6E-11 73.5 10.0 93 177-277 22-118 (133)
56 1r26_A Thioredoxin; redox-acti 98.4 2.1E-06 7.2E-11 72.5 10.5 94 167-276 28-123 (125)
57 1syr_A Thioredoxin; SGPP, stru 98.4 4.3E-06 1.5E-10 68.6 12.0 97 165-275 15-111 (112)
58 2f51_A Thioredoxin; electron t 98.4 2.6E-06 8.9E-11 71.0 10.8 102 165-274 8-111 (118)
59 3m9j_A Thioredoxin; oxidoreduc 98.4 3.1E-06 1E-10 68.1 10.9 95 168-274 10-104 (105)
60 2ppt_A Thioredoxin-2; thiredox 98.4 2.1E-06 7.2E-11 75.4 10.7 91 178-276 62-152 (155)
61 2oe3_A Thioredoxin-3; electron 98.3 3.3E-06 1.1E-10 69.9 11.1 91 170-272 20-112 (114)
62 3d6i_A Monothiol glutaredoxin- 98.3 1.9E-06 6.4E-11 70.5 9.4 97 167-276 9-109 (112)
63 1sen_A Thioredoxin-like protei 98.3 6.6E-07 2.2E-11 79.5 6.6 113 155-278 24-150 (164)
64 1gh2_A Thioredoxin-like protei 98.3 4.2E-06 1.4E-10 67.9 11.0 97 167-275 10-106 (107)
65 2dj1_A Protein disulfide-isome 98.3 3.4E-06 1.2E-10 71.8 10.8 101 165-278 23-126 (140)
66 2kzr_A Ubiquitin thioesterase 98.3 7.1E-07 2.4E-11 70.8 5.9 71 369-442 2-74 (86)
67 2l5l_A Thioredoxin; structural 98.3 4.5E-06 1.5E-10 71.2 11.3 92 179-278 37-128 (136)
68 2j23_A Thioredoxin; immune pro 98.3 3.2E-06 1.1E-10 70.6 10.1 90 177-275 30-120 (121)
69 3uvt_A Thioredoxin domain-cont 98.3 6.9E-06 2.4E-10 66.5 11.4 93 165-273 11-109 (111)
70 2xc2_A Thioredoxinn; oxidoredu 98.3 5.3E-06 1.8E-10 68.5 10.4 94 167-274 22-116 (117)
71 2b5x_A YKUV protein, TRXY; thi 98.3 6.3E-06 2.2E-10 70.1 11.1 98 175-277 24-146 (148)
72 3bq3_A Defective in cullin ned 98.3 3.9E-07 1.3E-11 87.4 3.6 48 4-53 10-57 (270)
73 1zma_A Bacterocin transport ac 98.2 6.3E-06 2.2E-10 68.2 10.4 88 176-272 25-117 (118)
74 1v98_A Thioredoxin; oxidoreduc 98.2 5.9E-06 2E-10 70.7 10.5 90 178-276 49-138 (140)
75 2vim_A Thioredoxin, TRX; thior 98.2 1.3E-05 4.5E-10 64.0 12.0 93 168-274 9-103 (104)
76 3aps_A DNAJ homolog subfamily 98.2 4.2E-06 1.4E-10 69.5 9.1 101 170-278 11-115 (122)
77 3qou_A Protein YBBN; thioredox 98.2 4.3E-06 1.5E-10 80.4 10.5 101 165-275 13-113 (287)
78 3raz_A Thioredoxin-related pro 98.2 7.2E-06 2.5E-10 70.8 10.8 93 179-279 23-143 (151)
79 1oaz_A Thioredoxin 1; immune s 98.2 1.7E-06 6E-11 72.8 6.7 98 167-275 11-122 (123)
80 2f9s_A Thiol-disulfide oxidore 98.2 5.4E-06 1.8E-10 71.4 10.0 95 179-278 25-140 (151)
81 3dxb_A Thioredoxin N-terminall 98.2 3.5E-06 1.2E-10 78.4 9.3 102 166-278 19-120 (222)
82 3apq_A DNAJ homolog subfamily 98.2 8E-06 2.7E-10 75.1 11.5 100 167-278 105-204 (210)
83 2wz9_A Glutaredoxin-3; protein 98.2 9.8E-06 3.3E-10 70.6 11.2 97 167-277 21-119 (153)
84 2l6c_A Thioredoxin; oxidoreduc 98.2 8.5E-06 2.9E-10 66.7 9.9 88 178-276 17-106 (110)
85 1zzo_A RV1677; thioredoxin fol 98.2 5.6E-06 1.9E-10 69.2 8.9 89 179-276 24-135 (136)
86 2lja_A Putative thiol-disulfid 98.2 1E-05 3.4E-10 69.6 10.7 96 179-279 29-146 (152)
87 3gix_A Thioredoxin-like protei 98.2 7.2E-06 2.5E-10 71.5 9.7 91 178-276 21-121 (149)
88 1lu4_A Soluble secreted antige 98.2 6.1E-06 2.1E-10 69.3 8.7 88 179-275 23-135 (136)
89 4evm_A Thioredoxin family prot 98.2 1.1E-05 3.6E-10 67.4 10.1 90 179-273 21-136 (138)
90 2qsi_A Putative hydrogenase ex 98.1 2.4E-05 8.3E-10 67.4 12.3 113 148-276 6-123 (137)
91 3erw_A Sporulation thiol-disul 98.1 7.6E-06 2.6E-10 69.3 8.8 88 179-271 33-144 (145)
92 1faa_A Thioredoxin F; electron 98.1 2.5E-05 8.7E-10 64.9 11.6 97 165-274 24-122 (124)
93 1wmj_A Thioredoxin H-type; str 98.1 8E-07 2.7E-11 74.6 2.0 101 165-277 21-123 (130)
94 3emx_A Thioredoxin; structural 98.1 9.2E-06 3.2E-10 69.2 8.8 88 182-278 33-128 (135)
95 2pu9_C TRX-F, thioredoxin F-ty 98.1 1.3E-05 4.3E-10 65.4 9.2 97 166-275 12-110 (111)
96 1mek_A Protein disulfide isome 98.1 5.5E-06 1.9E-10 67.9 6.9 100 165-276 13-117 (120)
97 3cxg_A Putative thioredoxin; m 98.1 1.3E-05 4.4E-10 68.2 8.8 98 167-276 29-129 (133)
98 1kng_A Thiol:disulfide interch 98.0 1.4E-05 4.7E-10 68.9 8.9 90 179-276 41-152 (156)
99 3kh7_A Thiol:disulfide interch 98.0 1.2E-05 4.2E-10 71.7 8.8 92 178-277 56-168 (176)
100 2yj7_A LPBCA thioredoxin; oxid 97.3 6.6E-07 2.3E-11 71.8 0.0 92 175-274 14-105 (106)
101 2av4_A Thioredoxin-like protei 98.0 1.3E-05 4.6E-10 70.5 8.3 100 167-276 30-139 (160)
102 3fkf_A Thiol-disulfide oxidore 98.0 1.7E-05 5.8E-10 67.5 8.6 90 179-276 32-146 (148)
103 2b1k_A Thiol:disulfide interch 98.0 9.8E-06 3.4E-10 71.2 7.3 90 179-276 50-160 (168)
104 1qgv_A Spliceosomal protein U5 98.0 2.1E-05 7.3E-10 67.9 9.3 91 179-277 22-122 (142)
105 3or5_A Thiol:disulfide interch 98.0 6.3E-05 2.2E-09 65.3 12.0 95 179-278 33-153 (165)
106 3kcm_A Thioredoxin family prot 98.0 5.8E-05 2E-09 64.8 11.5 95 179-278 27-145 (154)
107 2l5o_A Putative thioredoxin; s 98.0 2.9E-05 9.8E-10 66.7 9.4 96 178-278 26-143 (153)
108 3lor_A Thiol-disulfide isomera 98.0 0.00011 3.8E-09 63.5 13.2 97 174-277 24-156 (160)
109 3h79_A Thioredoxin-like protei 98.0 4E-05 1.4E-09 64.2 10.0 98 166-273 22-125 (127)
110 3eyt_A Uncharacterized protein 98.0 3.5E-05 1.2E-09 66.6 9.9 92 179-277 27-153 (158)
111 2qgv_A Hydrogenase-1 operon pr 98.0 4.1E-05 1.4E-09 66.2 10.2 111 148-276 9-125 (140)
112 3hcz_A Possible thiol-disulfid 98.0 1.4E-05 4.9E-10 67.9 7.3 93 179-276 30-146 (148)
113 3lwa_A Secreted thiol-disulfid 97.9 6.5E-05 2.2E-09 66.9 11.4 93 179-276 58-181 (183)
114 3gl3_A Putative thiol:disulfid 97.9 0.00012 4.1E-09 62.7 12.5 96 178-278 26-144 (152)
115 2dj0_A Thioredoxin-related tra 97.9 3E-05 1E-09 66.0 8.1 92 165-266 13-111 (137)
116 2lrn_A Thiol:disulfide interch 97.9 0.00011 3.9E-09 63.2 11.7 92 179-278 28-143 (152)
117 2h30_A Thioredoxin, peptide me 97.9 3.1E-05 1.1E-09 67.3 8.0 91 178-276 36-156 (164)
118 2ggt_A SCO1 protein homolog, m 97.9 8.4E-05 2.9E-09 64.5 10.8 95 179-278 22-163 (164)
119 1x5e_A Thioredoxin domain cont 97.9 7E-05 2.4E-09 62.4 9.8 97 166-277 14-111 (126)
120 2dbc_A PDCL2, unnamed protein 97.9 1.9E-05 6.4E-10 67.5 6.3 92 167-273 18-118 (135)
121 3ed3_A Protein disulfide-isome 97.9 8.6E-05 3E-09 72.3 11.7 101 167-276 25-142 (298)
122 3ia1_A THIO-disulfide isomeras 97.9 7.1E-05 2.4E-09 64.4 9.9 89 181-277 31-145 (154)
123 1a8l_A Protein disulfide oxido 97.9 0.00014 4.8E-09 67.0 12.5 94 174-275 127-225 (226)
124 3q6o_A Sulfhydryl oxidase 1; p 97.9 4.9E-05 1.7E-09 71.4 9.5 116 155-279 6-130 (244)
125 2djj_A PDI, protein disulfide- 97.8 2.3E-05 7.7E-10 64.8 6.3 89 178-276 23-117 (121)
126 1jfu_A Thiol:disulfide interch 97.8 0.00021 7.2E-09 63.7 12.1 93 179-276 59-180 (186)
127 3hdc_A Thioredoxin family prot 97.8 0.0001 3.5E-09 64.0 9.7 91 179-274 40-150 (158)
128 2dj3_A Protein disulfide-isome 97.8 5.8E-05 2E-09 63.4 7.6 93 179-278 24-120 (133)
129 3ha9_A Uncharacterized thiored 97.7 0.00016 5.6E-09 63.0 10.6 87 179-275 36-163 (165)
130 2rli_A SCO2 protein homolog, m 97.7 0.00027 9.3E-09 61.7 11.9 95 179-278 25-166 (171)
131 3t58_A Sulfhydryl oxidase 1; o 97.7 0.00012 4.1E-09 76.8 11.2 118 155-279 6-130 (519)
132 3fw2_A Thiol-disulfide oxidore 97.7 0.00012 4.1E-09 62.9 9.4 87 179-276 32-148 (150)
133 3idv_A Protein disulfide-isome 97.7 0.00014 4.8E-09 67.4 10.5 100 165-277 21-123 (241)
134 3ewl_A Uncharacterized conserv 97.7 0.00015 5E-09 61.4 9.8 91 179-274 26-139 (142)
135 2lrt_A Uncharacterized protein 97.7 0.00016 5.6E-09 62.5 10.2 91 179-274 34-146 (152)
136 3iv4_A Putative oxidoreductase 97.7 0.00023 8E-09 59.0 10.1 88 174-270 18-110 (112)
137 3s9f_A Tryparedoxin; thioredox 97.7 0.00016 5.6E-09 63.6 9.2 77 177-257 45-145 (165)
138 1i5g_A Tryparedoxin II; electr 97.6 0.00026 8.8E-09 60.2 10.0 75 179-257 27-125 (144)
139 1nho_A Probable thioredoxin; b 97.6 0.00012 4.3E-09 56.0 7.2 81 183-275 4-84 (85)
140 2es7_A Q8ZP25_salty, putative 97.6 0.00015 5.1E-09 62.8 8.2 99 164-277 22-126 (142)
141 1o8x_A Tryparedoxin, TRYX, TXN 97.6 0.00026 9E-09 60.4 9.8 77 178-258 26-126 (146)
142 1o73_A Tryparedoxin; electron 97.6 0.00029 9.8E-09 59.8 9.4 77 178-258 26-126 (144)
143 1fo5_A Thioredoxin; disulfide 97.6 0.00016 5.6E-09 55.3 6.9 82 181-274 3-84 (85)
144 3eur_A Uncharacterized protein 97.6 0.0002 6.7E-09 60.9 8.1 80 179-260 30-132 (142)
145 1wou_A Thioredoxin -related pr 97.6 0.00013 4.5E-09 60.8 6.8 64 179-249 23-101 (123)
146 1wj7_A Hypothetical protein (R 97.5 0.00011 3.8E-09 59.5 5.5 43 8-51 37-79 (104)
147 2r2j_A Thioredoxin domain-cont 97.5 0.00047 1.6E-08 69.2 11.3 100 166-277 12-118 (382)
148 3kp8_A Vkorc1/thioredoxin doma 97.5 8.7E-05 3E-09 60.8 4.6 86 171-271 3-90 (106)
149 2hyx_A Protein DIPZ; thioredox 97.5 0.00043 1.5E-08 69.1 10.5 94 179-277 81-200 (352)
150 2b5e_A Protein disulfide-isome 97.5 0.00056 1.9E-08 71.1 11.6 100 165-276 20-122 (504)
151 1z96_A DNA-damage, UBA-domain 97.4 0.00017 5.7E-09 48.3 4.8 37 10-48 4-40 (40)
152 3idv_A Protein disulfide-isome 97.4 0.00088 3E-08 61.9 11.2 99 165-276 136-237 (241)
153 1oai_A Nuclear RNA export fact 97.4 0.00019 6.5E-09 52.5 5.0 45 4-50 2-46 (59)
154 3f8u_A Protein disulfide-isome 97.4 0.00026 8.9E-09 73.1 7.6 102 166-276 8-109 (481)
155 1sji_A Calsequestrin 2, calseq 97.4 0.00094 3.2E-08 66.1 11.3 96 168-276 20-122 (350)
156 3evi_A Phosducin-like protein 97.4 0.00033 1.1E-08 58.6 6.8 82 166-262 10-93 (118)
157 1a0r_P Phosducin, MEKA, PP33; 97.3 0.00015 5E-09 68.8 4.7 98 168-278 122-224 (245)
158 1ilo_A Conserved hypothetical 97.3 0.0007 2.4E-08 50.9 7.8 74 183-271 2-76 (77)
159 3drn_A Peroxiredoxin, bacterio 97.3 0.0011 3.7E-08 57.7 10.1 92 179-275 27-144 (161)
160 2trc_P Phosducin, MEKA, PP33; 97.3 0.0005 1.7E-08 63.8 8.1 99 167-278 108-211 (217)
161 2k6v_A Putative cytochrome C o 97.3 0.00065 2.2E-08 59.2 8.3 87 179-274 34-171 (172)
162 2bmx_A Alkyl hydroperoxidase C 97.3 0.00084 2.9E-08 60.5 9.3 93 179-276 44-170 (195)
163 4fo5_A Thioredoxin-like protei 97.3 0.00023 7.7E-09 60.6 5.1 83 179-272 31-141 (143)
164 2cvb_A Probable thiol-disulfid 97.3 0.00064 2.2E-08 60.6 8.2 90 179-278 32-161 (188)
165 3cmi_A Peroxiredoxin HYR1; thi 97.3 0.00076 2.6E-08 59.3 8.5 89 179-276 31-168 (171)
166 2ywi_A Hypothetical conserved 97.3 0.00052 1.8E-08 61.5 7.5 92 179-278 44-176 (196)
167 1we0_A Alkyl hydroperoxide red 97.3 0.00087 3E-08 59.9 8.9 90 179-276 30-157 (187)
168 2jp7_A MRNA export factor MEX6 97.2 0.00031 1.1E-08 50.9 4.4 44 5-50 2-45 (57)
169 1zof_A Alkyl hydroperoxide-red 97.2 0.0008 2.7E-08 60.8 8.2 89 179-275 32-160 (198)
170 2p5q_A Glutathione peroxidase 97.2 0.002 6.8E-08 56.0 10.5 90 179-276 31-168 (170)
171 3uem_A Protein disulfide-isome 97.2 0.00059 2E-08 67.6 7.9 98 166-274 256-355 (361)
172 3us3_A Calsequestrin-1; calciu 97.2 0.0017 5.7E-08 64.9 11.1 101 165-276 19-124 (367)
173 1xvw_A Hypothetical protein RV 97.2 0.00079 2.7E-08 58.2 7.6 85 180-272 35-156 (160)
174 2vup_A Glutathione peroxidase- 97.2 0.0015 5.2E-08 58.5 9.5 91 179-277 47-186 (190)
175 3f8u_A Protein disulfide-isome 97.1 0.00081 2.8E-08 69.3 8.3 100 166-276 359-461 (481)
176 2ywm_A Glutaredoxin-like prote 97.1 0.0027 9.3E-08 58.4 10.9 84 179-276 135-220 (229)
177 2v1m_A Glutathione peroxidase; 97.1 0.0026 8.8E-08 55.2 9.9 90 179-276 30-167 (169)
178 2h01_A 2-Cys peroxiredoxin; th 97.0 0.0024 8.3E-08 57.2 9.0 89 179-275 30-158 (192)
179 1zye_A Thioredoxin-dependent p 97.0 0.0024 8.4E-08 58.9 9.1 94 179-276 55-185 (220)
180 1ttn_A DC-UBP, dendritic cell- 97.0 0.0023 7.8E-08 52.4 7.9 80 358-444 14-94 (106)
181 1a8l_A Protein disulfide oxido 97.0 0.0055 1.9E-07 56.0 11.4 91 179-276 21-113 (226)
182 1qmv_A Human thioredoxin perox 97.0 0.0034 1.1E-07 56.6 9.7 92 179-275 33-162 (197)
183 1uul_A Tryparedoxin peroxidase 96.9 0.0029 9.8E-08 57.4 9.2 89 179-275 35-164 (202)
184 2pjh_A Protein NPL4, nuclear p 96.9 0.00076 2.6E-08 52.5 4.4 72 368-442 5-77 (80)
185 1ify_A HHR23A, UV excision rep 96.9 0.001 3.5E-08 46.7 4.7 43 6-50 4-46 (49)
186 3apo_A DNAJ homolog subfamily 96.9 0.00083 2.8E-08 73.7 6.1 97 168-276 125-221 (780)
187 2b7k_A SCO1 protein; metalloch 96.9 0.0043 1.5E-07 56.2 9.8 92 179-278 40-181 (200)
188 1dv0_A DNA repair protein HHR2 96.9 0.00095 3.3E-08 46.4 4.0 40 11-52 5-44 (47)
189 2obi_A PHGPX, GPX-4, phospholi 96.9 0.0044 1.5E-07 55.0 9.6 88 179-274 46-182 (183)
190 2djk_A PDI, protein disulfide- 96.8 0.0033 1.1E-07 53.1 8.2 89 177-276 20-115 (133)
191 2i81_A 2-Cys peroxiredoxin; st 96.8 0.0047 1.6E-07 56.7 9.8 89 179-275 51-179 (213)
192 1wju_A NEDD8 ultimate buster-1 96.8 0.0039 1.3E-07 50.5 8.0 71 365-442 13-88 (100)
193 3dwv_A Glutathione peroxidase- 96.8 0.0029 1E-07 56.6 8.2 91 179-277 45-184 (187)
194 1vg5_A RSGI RUH-014, rhomboid 96.8 0.0016 5.6E-08 49.5 5.4 39 11-51 30-68 (73)
195 2knz_A Ubiquilin-4; cytoplasm, 96.8 0.0024 8.3E-08 45.5 5.8 41 9-51 10-51 (53)
196 3kij_A Probable glutathione pe 96.8 0.0057 1.9E-07 54.2 9.7 90 179-276 37-170 (180)
197 2g3q_A Protein YBL047C; endocy 96.8 0.0022 7.5E-08 43.6 5.1 38 11-50 5-42 (43)
198 2f8a_A Glutathione peroxidase 96.7 0.0059 2E-07 55.9 9.6 90 179-276 46-207 (208)
199 1wji_A Tudor domain containing 96.7 0.004 1.4E-07 46.0 6.7 41 11-53 10-50 (63)
200 3apo_A DNAJ homolog subfamily 96.7 0.0038 1.3E-07 68.4 9.5 116 153-278 650-769 (780)
201 1xzo_A BSSCO, hypothetical pro 96.7 0.0074 2.5E-07 52.5 9.4 39 237-276 132-172 (174)
202 4gew_A 5'-tyrosyl-DNA phosphod 96.7 0.00072 2.5E-08 67.6 3.0 39 11-50 46-84 (362)
203 2jy5_A Ubiquilin-1; UBA, alter 96.6 0.0032 1.1E-07 44.7 5.0 38 11-50 13-51 (52)
204 3u5r_E Uncharacterized protein 96.6 0.0054 1.9E-07 56.4 8.1 93 179-279 57-190 (218)
205 3ga4_A Dolichyl-diphosphooligo 96.6 0.012 4E-07 52.8 10.0 104 165-276 24-153 (178)
206 2p31_A CL683, glutathione pero 96.6 0.0042 1.4E-07 55.1 7.1 89 179-275 48-180 (181)
207 1veg_A NEDD8 ultimate buster-1 96.5 0.0026 8.9E-08 49.6 4.7 40 11-52 30-69 (83)
208 2gs3_A PHGPX, GPX-4, phospholi 96.5 0.0072 2.4E-07 53.8 8.4 88 179-274 48-184 (185)
209 2b5e_A Protein disulfide-isome 96.5 0.0023 7.8E-08 66.5 5.7 97 167-276 366-467 (504)
210 2hls_A Protein disulfide oxido 96.5 0.013 4.5E-07 54.9 10.4 88 179-278 137-228 (243)
211 2dah_A Ubiquilin-3; UBA domain 96.5 0.0037 1.3E-07 44.7 4.9 41 11-52 10-50 (54)
212 3qcp_A QSOX from trypanosoma b 96.5 0.0045 1.5E-07 63.8 7.5 93 178-276 40-152 (470)
213 2bwb_A Ubiquitin-like protein 96.5 0.0046 1.6E-07 42.7 5.1 38 11-49 8-45 (46)
214 3me7_A Putative uncharacterize 96.4 0.013 4.6E-07 51.4 9.3 51 228-279 105-165 (170)
215 3ztl_A Thioredoxin peroxidase; 96.4 0.0047 1.6E-07 57.0 6.6 86 179-272 68-194 (222)
216 3v6c_B Ubiquitin; structural g 96.4 0.024 8.1E-07 44.6 9.8 73 365-444 15-88 (91)
217 1z6n_A Hypothetical protein PA 96.4 0.006 2.1E-07 54.0 7.0 73 178-260 52-129 (167)
218 1ndd_A NEDD8, protein (ubiquit 96.4 0.019 6.5E-07 43.0 8.8 68 369-443 2-70 (76)
219 1wgn_A UBAP1, ubiquitin associ 96.4 0.0041 1.4E-07 45.0 4.5 48 3-53 13-60 (63)
220 2jsy_A Probable thiol peroxida 96.3 0.019 6.5E-07 49.8 9.9 89 179-275 43-166 (167)
221 2qc7_A ERP31, ERP28, endoplasm 96.3 0.018 6E-07 54.2 10.2 97 165-275 11-118 (240)
222 2ls5_A Uncharacterized protein 95.3 0.00059 2E-08 58.9 0.0 95 173-271 26-143 (159)
223 3gkn_A Bacterioferritin comigr 96.3 0.013 4.5E-07 50.5 8.5 87 179-273 34-159 (163)
224 3a9j_A Ubiquitin; protein comp 96.3 0.021 7.3E-07 42.7 8.5 69 369-444 2-71 (76)
225 2dzi_A Ubiquitin-like protein 96.3 0.021 7.3E-07 43.5 8.6 72 365-443 5-77 (81)
226 1wiv_A UBP14, ubiquitin-specif 96.2 0.0072 2.5E-07 46.0 5.7 41 11-53 30-70 (73)
227 3a2v_A Probable peroxiredoxin; 96.2 0.011 3.9E-07 55.8 8.3 93 179-275 32-161 (249)
228 3mtn_B UBA80, ubcep1, ubiquiti 96.2 0.023 7.8E-07 43.7 8.7 70 367-443 3-73 (85)
229 2c0g_A ERP29 homolog, windbeut 96.2 0.031 1.1E-06 52.8 11.2 98 165-277 22-133 (248)
230 4dwf_A HLA-B-associated transc 96.2 0.03 1E-06 43.8 9.4 73 365-444 3-75 (90)
231 2l2d_A OTU domain-containing p 96.2 0.0064 2.2E-07 44.1 4.7 40 9-49 16-55 (73)
232 1wr1_B Ubiquitin-like protein 96.1 0.0076 2.6E-07 43.7 4.9 40 10-50 17-56 (58)
233 4gqc_A Thiol peroxidase, perox 96.1 0.023 7.8E-07 49.7 9.1 95 178-276 31-160 (164)
234 2wyq_A HHR23A, UV excision rep 96.1 0.036 1.2E-06 42.7 9.3 73 365-443 3-78 (85)
235 2lus_A Thioredoxion; CR-Trp16, 95.1 0.00096 3.3E-08 56.2 0.0 74 179-257 24-124 (143)
236 1vej_A Riken cDNA 4931431F19; 96.1 0.011 3.8E-07 45.0 5.9 42 10-52 29-70 (74)
237 1wh3_A 59 kDa 2'-5'-oligoadeny 96.1 0.033 1.1E-06 43.2 9.0 71 366-443 6-77 (87)
238 2ywm_A Glutaredoxin-like prote 96.1 0.057 1.9E-06 49.3 12.0 102 167-276 5-115 (229)
239 2i3y_A Epididymal secretory gl 96.1 0.053 1.8E-06 49.9 11.8 34 242-276 178-211 (215)
240 2dkl_A Trinucleotide repeat co 96.1 0.0093 3.2E-07 46.8 5.5 41 11-53 22-62 (85)
241 2hj8_A Interferon-induced 17 k 96.0 0.037 1.3E-06 43.3 9.0 70 367-443 4-74 (88)
242 1yx5_B Ubiquitin; proteasome, 96.0 0.033 1.1E-06 44.4 8.7 68 369-443 2-70 (98)
243 1xvq_A Thiol peroxidase; thior 96.0 0.031 1.1E-06 49.2 9.3 87 179-273 43-165 (175)
244 1n8j_A AHPC, alkyl hydroperoxi 96.0 0.033 1.1E-06 49.6 9.7 89 179-275 29-155 (186)
245 4g2e_A Peroxiredoxin; redox pr 95.9 0.028 9.6E-07 48.6 8.7 90 179-272 29-154 (157)
246 2pn8_A Peroxiredoxin-4; thiore 95.9 0.03 1E-06 51.2 9.2 89 179-275 47-176 (211)
247 1uel_A HHR23B, UV excision rep 95.9 0.042 1.5E-06 43.6 8.9 69 369-443 2-73 (95)
248 2bwf_A Ubiquitin-like protein 95.9 0.039 1.3E-06 41.5 8.4 69 368-444 5-74 (77)
249 3dbh_I NEDD8; cell cycle, acti 95.9 0.045 1.5E-06 42.4 9.0 72 365-443 10-82 (88)
250 3ixr_A Bacterioferritin comigr 95.9 0.028 9.7E-07 49.7 8.7 88 179-274 50-176 (179)
251 2dak_A Ubiquitin carboxyl-term 95.8 0.0075 2.6E-07 44.5 4.0 40 11-52 10-49 (63)
252 2r37_A Glutathione peroxidase 95.8 0.079 2.7E-06 48.3 11.6 34 242-276 160-193 (207)
253 2cwb_A Chimera of immunoglobul 95.8 0.013 4.4E-07 48.0 5.4 41 11-52 67-107 (108)
254 3phx_B Ubiquitin-like protein 95.8 0.072 2.5E-06 40.4 9.5 71 367-444 4-75 (79)
255 4hcn_B Polyubiquitin, ubiquiti 95.7 0.034 1.2E-06 44.5 7.9 72 365-443 20-92 (98)
256 1wyw_B Ubiquitin-like protein 95.7 0.046 1.6E-06 43.7 8.6 72 365-443 19-91 (97)
257 2c0d_A Thioredoxin peroxidase 95.7 0.059 2E-06 49.7 10.5 89 179-275 55-183 (221)
258 1wjn_A Tubulin-folding protein 95.7 0.054 1.8E-06 43.2 8.8 78 365-444 7-91 (97)
259 3keb_A Probable thiol peroxida 95.7 0.037 1.3E-06 51.4 8.9 91 179-278 47-178 (224)
260 1uh6_A Ubiquitin-like 5; beta- 95.6 0.07 2.4E-06 43.0 9.2 73 365-444 26-99 (100)
261 2yzh_A Probable thiol peroxida 95.6 0.1 3.5E-06 45.3 11.2 88 179-274 46-170 (171)
262 4eew_A Large proline-rich prot 95.6 0.066 2.3E-06 41.6 8.9 73 365-444 15-87 (88)
263 1wjk_A C330018D20RIK protein; 95.5 0.049 1.7E-06 43.5 8.1 82 180-276 15-96 (100)
264 2faz_A Ubiquitin-like containi 95.5 0.063 2.1E-06 40.6 8.3 71 367-444 2-75 (78)
265 2e7p_A Glutaredoxin; thioredox 95.5 0.021 7.4E-07 46.2 5.8 88 171-272 11-104 (116)
266 3k9o_B Ubiquitin, UBB+1; E2-25 95.4 0.064 2.2E-06 42.4 8.4 69 368-443 2-71 (96)
267 3n3k_B Ubiquitin; hydrolase, p 95.4 0.06 2E-06 41.3 7.9 70 367-443 3-73 (85)
268 3qpm_A Peroxiredoxin; oxidored 95.4 0.031 1.1E-06 52.3 7.4 88 179-274 76-204 (240)
269 2cpw_A CBL-interacting protein 95.4 0.027 9.3E-07 41.6 5.5 40 12-53 21-61 (64)
270 2ooa_A E3 ubiquitin-protein li 95.3 0.027 9.3E-07 39.4 4.9 38 10-49 11-48 (52)
271 3p7x_A Probable thiol peroxida 95.3 0.036 1.2E-06 48.2 7.1 87 179-273 45-165 (166)
272 1j8c_A Ubiquitin-like protein 95.3 0.12 4.2E-06 43.3 10.0 71 365-443 30-101 (125)
273 2dai_A Ubadc1, ubiquitin assoc 95.3 0.021 7.3E-07 44.5 4.8 41 11-53 30-70 (83)
274 1psq_A Probable thiol peroxida 95.2 0.12 4.1E-06 44.6 10.2 87 179-273 41-162 (163)
275 1whc_A RSGI RUH-027, UBA/UBX 3 95.2 0.026 8.8E-07 41.7 4.8 40 12-53 11-51 (64)
276 1ttz_A Conserved hypothetical 95.1 0.084 2.9E-06 41.3 8.0 75 184-276 3-77 (87)
277 1wia_A Hypothetical ubiquitin- 95.1 0.07 2.4E-06 42.2 7.7 69 366-443 6-75 (95)
278 1we6_A Splicing factor, putati 95.1 0.14 4.8E-06 41.8 9.7 71 366-443 26-101 (111)
279 2dna_A Unnamed protein product 95.1 0.048 1.6E-06 40.6 6.0 42 11-53 20-61 (67)
280 3uem_A Protein disulfide-isome 95.1 0.085 2.9E-06 51.8 9.9 111 158-277 116-231 (361)
281 4f9z_D Endoplasmic reticulum r 95.0 0.29 9.9E-06 44.8 12.8 108 164-276 115-225 (227)
282 2ekk_A UBA domain from E3 ubiq 95.0 0.031 1.1E-06 38.5 4.6 37 11-50 10-46 (47)
283 2uyz_B Small ubiquitin-related 95.0 0.12 4.2E-06 39.1 8.5 70 367-443 3-73 (79)
284 1wx7_A Ubiquilin 3; ubiquitin- 95.0 0.18 6E-06 40.8 9.9 71 365-443 15-86 (106)
285 1sif_A Ubiquitin; hydrophobic 95.0 0.088 3E-06 41.1 7.8 70 367-443 9-79 (88)
286 2a4v_A Peroxiredoxin DOT5; yea 95.0 0.14 4.9E-06 43.8 9.9 88 180-277 35-155 (159)
287 1wx8_A Riken cDNA 4931431F19; 95.0 0.074 2.5E-06 42.1 7.4 72 364-443 14-86 (96)
288 2klc_A Ubiquilin-1; ubiquitin- 94.9 0.14 4.7E-06 41.2 9.0 70 366-443 24-94 (101)
289 2kc2_A Talin-1, F1; FERM, adhe 94.9 0.094 3.2E-06 44.2 8.2 77 368-444 12-121 (128)
290 2ojr_A Ubiquitin; lanthide-bin 94.9 0.17 5.8E-06 41.3 9.6 71 366-443 34-105 (111)
291 2kan_A Uncharacterized protein 94.9 0.14 4.6E-06 40.7 8.7 72 365-443 13-85 (94)
292 1wy8_A NP95-like ring finger p 94.9 0.21 7.2E-06 38.7 9.8 72 366-444 6-80 (89)
293 3tjj_A Peroxiredoxin-4; thiore 94.8 0.042 1.4E-06 52.0 6.6 87 179-273 90-217 (254)
294 4fbj_B NEDD8; effector-HOST ta 94.8 0.12 4.2E-06 40.2 8.2 68 369-443 2-70 (88)
295 2d9s_A CBL E3 ubiquitin protei 94.8 0.039 1.3E-06 38.7 4.5 39 10-50 9-47 (53)
296 3vdz_A Ubiquitin-40S ribosomal 94.8 0.14 4.7E-06 42.0 8.7 71 366-443 34-105 (111)
297 4hde_A SCO1/SENC family lipopr 94.7 0.23 8E-06 43.4 10.7 35 240-275 133-169 (170)
298 1yqb_A Ubiquilin 3; structural 94.7 0.15 5.1E-06 40.9 8.6 71 365-443 20-91 (100)
299 1we7_A SF3A1 protein; structur 94.7 0.14 4.7E-06 42.2 8.5 71 366-443 24-105 (115)
300 3plu_A Ubiquitin-like modifier 94.6 0.22 7.4E-06 39.6 9.1 71 365-442 19-90 (93)
301 2cp8_A NEXT to BRCA1 gene 1 pr 94.6 0.054 1.8E-06 38.4 4.9 42 11-53 10-51 (54)
302 2dag_A Ubiquitin carboxyl-term 94.5 0.042 1.5E-06 41.8 4.6 41 11-53 10-51 (74)
303 1otr_A Protein CUE2; protein-p 94.5 0.046 1.6E-06 38.1 4.4 41 11-51 5-45 (49)
304 1tp9_A Peroxiredoxin, PRX D (t 94.5 0.074 2.5E-06 46.1 6.9 74 179-261 34-146 (162)
305 1q98_A Thiol peroxidase, TPX; 94.5 0.097 3.3E-06 45.3 7.6 74 179-260 42-148 (165)
306 3zrd_A Thiol peroxidase; oxido 94.4 0.23 7.7E-06 44.8 10.1 85 179-271 77-199 (200)
307 2kk8_A Uncharacterized protein 94.3 0.17 5.8E-06 39.2 7.8 71 367-443 10-81 (84)
308 2d07_B Ubiquitin-like protein 94.2 0.29 9.9E-06 38.7 9.1 73 365-444 15-88 (93)
309 2cp9_A EF-TS, EF-TSMT, elongat 94.2 0.048 1.7E-06 40.2 4.1 38 12-50 11-48 (64)
310 1v86_A DNA segment, CHR 7, way 94.1 0.18 6.1E-06 40.0 7.8 69 365-442 15-84 (95)
311 3m62_B UV excision repair prot 94.1 0.16 5.6E-06 41.1 7.6 69 368-443 2-71 (106)
312 1wgl_A TOLL-interacting protei 94.0 0.096 3.3E-06 38.0 5.4 42 12-53 11-52 (59)
313 3kp9_A Vkorc1/thioredoxin doma 94.0 0.03 1E-06 54.1 3.5 89 166-271 185-275 (291)
314 1wz0_A Ubiquitin-like protein 94.0 0.47 1.6E-05 38.4 10.1 73 365-444 22-95 (104)
315 4a20_A Ubiquitin-like protein 94.0 0.27 9.2E-06 39.4 8.6 74 364-443 16-93 (98)
316 2kdb_A Homocysteine-responsive 93.9 0.16 5.3E-06 40.9 7.1 72 365-442 21-98 (99)
317 1v2y_A 3300001G02RIK protein; 93.9 0.16 5.5E-06 41.3 7.2 72 366-443 6-93 (105)
318 2kdi_A Ubiquitin, vacuolar pro 93.8 0.3 1E-05 40.1 8.9 71 366-443 8-79 (114)
319 3u30_A Ubiquitin, linear DI-ub 93.8 0.23 8E-06 43.7 8.8 73 364-443 17-90 (172)
320 1eej_A Thiol:disulfide interch 93.8 0.11 3.9E-06 47.4 6.9 86 178-276 84-211 (216)
321 2kjr_A CG11242; UBL, ubiquitin 93.8 0.25 8.5E-06 39.3 8.0 76 365-442 13-92 (95)
322 2lxa_A Ubiquitin-like protein 93.7 0.24 8.3E-06 38.7 7.7 70 368-444 2-76 (87)
323 4eo3_A Bacterioferritin comigr 93.7 0.22 7.5E-06 48.7 9.1 87 179-276 23-139 (322)
324 1wxv_A BAG-family molecular ch 93.7 0.4 1.4E-05 37.4 9.0 71 366-443 6-82 (92)
325 1vek_A UBP14, ubiquitin-specif 93.6 0.087 3E-06 41.1 4.9 41 11-53 30-71 (84)
326 3b08_A Polyubiquitin-C, ubiqui 93.6 0.3 1E-05 41.6 8.9 70 367-443 76-146 (152)
327 1nm3_A Protein HI0572; hybrid, 93.6 0.21 7E-06 46.2 8.4 86 179-273 32-164 (241)
328 2eke_C Ubiquitin-like protein 93.6 0.56 1.9E-05 38.1 9.8 72 364-443 28-100 (106)
329 1v58_A Thiol:disulfide interch 93.6 0.21 7.3E-06 46.4 8.5 91 179-278 96-235 (241)
330 2io0_B Small ubiquitin-related 93.4 0.55 1.9E-05 37.0 9.3 71 366-443 4-75 (91)
331 3gyk_A 27KDA outer membrane pr 93.3 0.32 1.1E-05 42.2 8.8 40 230-276 134-173 (175)
332 3b08_A Polyubiquitin-C, ubiqui 93.3 0.31 1E-05 41.5 8.5 68 369-443 2-70 (152)
333 2io1_B Small ubiquitin-related 93.3 0.47 1.6E-05 37.6 8.9 73 365-444 5-78 (94)
334 2gow_A HCG-1 protein, ubiquiti 93.2 0.46 1.6E-05 39.8 9.1 66 365-436 15-87 (125)
335 2v2g_A Peroxiredoxin 6; oxidor 93.1 0.27 9.3E-06 45.7 8.4 88 180-275 28-164 (233)
336 1se9_A Ubiquitin family; ubiqu 93.1 0.73 2.5E-05 38.6 10.1 67 366-438 15-88 (126)
337 1wgd_A Homocysteine-responsive 92.9 0.53 1.8E-05 36.8 8.7 72 366-443 6-83 (93)
338 2k8h_A Small ubiquitin protein 92.8 0.5 1.7E-05 38.6 8.6 72 365-443 24-96 (110)
339 1jkg_B TAP; NTF2-like domain, 92.8 0.02 6.8E-07 54.2 0.0 46 5-52 194-239 (250)
340 2kd0_A LRR repeats and ubiquit 92.7 0.39 1.3E-05 37.1 7.5 69 367-443 12-81 (85)
341 1v5o_A 1700011N24RIK protein; 92.7 0.35 1.2E-05 38.7 7.5 72 366-443 6-82 (102)
342 2l7r_A Ubiquitin-like protein 92.5 0.42 1.5E-05 37.5 7.6 69 366-443 18-87 (93)
343 3sbc_A Peroxiredoxin TSA1; alp 92.5 0.52 1.8E-05 43.3 9.2 92 179-274 51-179 (216)
344 1x1m_A Ubiquitin-like protein 92.2 0.5 1.7E-05 38.2 7.8 72 366-443 11-97 (107)
345 3a4r_A Nfatc2-interacting prot 92.2 1.1 3.8E-05 34.1 9.4 69 366-441 6-75 (79)
346 3rt3_B Ubiquitin-like protein 92.0 0.63 2.2E-05 40.1 8.8 70 368-443 3-74 (159)
347 1wm3_A Ubiquitin-like protein 92.0 1.2 4E-05 33.2 9.1 66 368-440 2-67 (72)
348 1wgh_A Ubiquitin-like 3, HCG-1 91.9 1.1 3.7E-05 37.0 9.6 65 366-436 15-86 (116)
349 1vdl_A Ubiquitin carboxyl-term 91.8 0.71 2.4E-05 34.6 7.3 42 11-52 25-66 (80)
350 3b1l_X E3 ubiquitin-protein li 91.1 0.031 1.1E-06 42.1 0.0 67 369-442 2-69 (76)
351 2lbc_A Ubiquitin carboxyl-term 91.8 0.2 6.9E-06 42.0 5.1 40 11-52 79-118 (126)
352 3rt3_B Ubiquitin-like protein 91.7 0.96 3.3E-05 38.9 9.7 70 367-443 81-151 (159)
353 1hyu_A AHPF, alkyl hydroperoxi 91.4 1.1 3.9E-05 46.3 11.5 81 179-274 116-198 (521)
354 3tue_A Tryparedoxin peroxidase 91.1 0.9 3.1E-05 41.8 9.2 92 179-274 55-183 (219)
355 1wgg_A Ubiquitin carboxyl-term 91.0 0.39 1.3E-05 38.1 5.8 68 366-442 6-75 (96)
356 2hls_A Protein disulfide oxido 91.0 0.76 2.6E-05 42.6 8.7 84 179-276 24-117 (243)
357 2fgx_A Putative thioredoxin; N 90.7 0.52 1.8E-05 38.3 6.3 75 183-271 31-106 (107)
358 2daj_A KIAA0977 protein, COBL- 90.6 1.1 3.7E-05 34.7 7.5 68 365-436 8-75 (91)
359 2crn_A Ubash3A protein; compac 90.4 0.3 1E-05 35.9 4.3 40 12-53 11-51 (64)
360 3m63_B Ubiquitin domain-contai 90.4 0.38 1.3E-05 38.6 5.3 69 367-443 28-97 (101)
361 3l0w_B Monoubiquitinated proli 90.3 1.3 4.4E-05 38.9 9.2 68 369-443 2-70 (169)
362 3q3f_A Ribonuclease/ubiquitin 90.3 0.76 2.6E-05 41.3 7.6 70 367-443 105-175 (189)
363 4a3p_A Ubiquitin carboxyl-term 90.3 0.45 1.6E-05 43.7 6.4 72 372-444 133-207 (217)
364 2dhy_A CUE domain-containing p 90.1 0.4 1.4E-05 35.6 4.7 44 8-51 16-59 (67)
365 4ae4_A Ubiquitin-associated pr 89.9 0.38 1.3E-05 39.9 4.9 37 12-50 78-114 (118)
366 3jyu_A Ubiquitin carboxyl-term 89.8 0.98 3.4E-05 41.9 8.2 63 380-443 154-218 (231)
367 1t3b_A Thiol:disulfide interch 89.7 0.98 3.4E-05 40.9 8.1 82 179-273 85-208 (211)
368 2k8s_A Thioredoxin; dimer, str 89.6 0.48 1.6E-05 35.5 5.0 59 185-255 5-66 (80)
369 1v5t_A 8430435I17RIK protein; 89.5 1.1 3.6E-05 34.9 7.1 71 366-442 6-79 (90)
370 1wf9_A NPL4 family protein; be 89.5 0.9 3.1E-05 36.7 6.9 74 368-443 8-92 (107)
371 3uma_A Hypothetical peroxiredo 89.3 0.89 3.1E-05 40.4 7.4 84 179-270 55-183 (184)
372 3ai5_A Yeast enhanced green fl 89.2 1.4 4.8E-05 42.6 9.1 71 366-443 232-303 (307)
373 2al3_A TUG long isoform; TUG U 89.1 1.3 4.5E-05 34.7 7.2 67 369-442 11-78 (90)
374 3mng_A Peroxiredoxin-5, mitoch 89.0 1.2 4.3E-05 39.0 8.0 18 241-260 138-155 (173)
375 2kj6_A Tubulin folding cofacto 89.0 2.9 0.0001 33.1 9.4 76 365-442 12-92 (97)
376 1oqy_A HHR23A, UV excision rep 88.7 0.87 3E-05 45.3 7.5 69 366-440 6-77 (368)
377 1prx_A HORF6; peroxiredoxin, h 88.7 2.7 9.2E-05 38.4 10.4 87 181-275 32-168 (224)
378 2dzj_A Synaptic glycoprotein S 88.5 1.5 5E-05 34.1 7.2 71 368-442 11-85 (88)
379 2wfc_A Peroxiredoxin 5, PRDX5; 88.2 1.7 5.8E-05 37.7 8.3 84 179-271 30-159 (167)
380 4ae4_A Ubiquitin-associated pr 88.2 0.69 2.4E-05 38.3 5.3 45 3-50 2-46 (118)
381 3kyd_D Small ubiquitin-related 88.0 2.8 9.7E-05 34.4 8.9 71 365-442 38-109 (115)
382 3h93_A Thiol:disulfide interch 87.7 1.8 6.1E-05 38.1 8.3 41 232-276 144-184 (192)
383 2daf_A FLJ35834 protein; hypot 87.7 3.1 0.00011 34.3 8.9 71 366-443 14-86 (118)
384 4b6w_A Tubulin-specific chaper 87.6 2.7 9.3E-05 32.5 8.3 71 367-442 2-80 (86)
385 2juj_A E3 ubiquitin-protein li 87.6 0.84 2.9E-05 32.1 4.5 43 8-52 5-47 (56)
386 3u30_A Ubiquitin, linear DI-ub 86.7 1.7 5.9E-05 37.9 7.5 70 367-443 96-166 (172)
387 3u5e_m 60S ribosomal protein L 86.2 0.14 4.8E-06 43.0 0.0 68 369-443 2-70 (128)
388 2cq9_A GLRX2 protein, glutared 85.9 1.8 6E-05 36.0 6.8 78 165-256 12-92 (130)
389 1xcc_A 1-Cys peroxiredoxin; un 85.4 2 7E-05 39.1 7.6 88 180-275 30-165 (220)
390 3pge_A SUMO-modified prolifera 85.3 4.2 0.00014 36.7 9.3 72 364-443 26-98 (200)
391 2lva_A Ubiquitin carboxyl-term 85.4 0.17 5.8E-06 41.8 0.0 42 12-53 20-61 (129)
392 2dzm_A FAS-associated factor 1 84.7 4.1 0.00014 32.5 8.1 71 366-443 8-79 (100)
393 1v6e_A Cytoskeleton-associated 84.5 4.4 0.00015 31.7 8.1 74 367-442 7-84 (95)
394 2oo9_A E3 ubiquitin-protein li 84.5 1.9 6.4E-05 29.2 4.8 39 9-49 3-41 (46)
395 1ego_A Glutaredoxin; electron 83.8 2.5 8.5E-05 31.4 6.3 73 184-273 3-81 (85)
396 2pwj_A Mitochondrial peroxired 83.1 2.1 7.3E-05 37.1 6.3 52 181-238 45-102 (171)
397 3tix_A Ubiquitin-like protein 83.0 3.9 0.00013 36.7 7.8 71 364-442 54-125 (207)
398 2jxx_A Nfatc2-interacting prot 82.5 8.6 0.00029 30.5 9.0 71 365-442 23-94 (97)
399 2fnj_B Transcription elongatio 81.6 2.9 9.8E-05 34.5 6.1 67 370-443 3-78 (118)
400 3u5c_f 40S ribosomal protein S 81.1 0.31 1.1E-05 42.3 0.0 68 369-443 2-70 (152)
401 1t0y_A Tubulin folding cofacto 80.2 8.4 0.00029 31.6 8.7 76 366-443 5-84 (122)
402 1tr8_A Conserved protein (MTH1 79.4 1.9 6.4E-05 34.7 4.1 31 14-45 69-99 (102)
403 3hd5_A Thiol:disulfide interch 79.4 5.7 0.0002 34.7 7.9 39 232-276 143-184 (195)
404 2di0_A Activating signal coint 78.8 5 0.00017 30.0 5.9 48 4-51 7-54 (71)
405 3q6o_A Sulfhydryl oxidase 1; p 77.9 9.9 0.00034 34.5 9.3 66 177-255 154-219 (244)
406 2ht9_A Glutaredoxin-2; thiored 76.7 7.8 0.00027 32.8 7.6 74 168-255 37-113 (146)
407 1oqy_A HHR23A, UV excision rep 76.4 1.5 5.3E-05 43.5 3.4 42 8-51 166-207 (368)
408 2qho_B E3 ubiquitin-protein li 75.5 6.5 0.00022 26.9 5.2 41 11-51 10-50 (53)
409 3rhb_A ATGRXC5, glutaredoxin-C 75.2 8.1 0.00028 30.6 7.0 72 167-255 6-84 (113)
410 3shq_A UBLCP1; phosphatase, hy 74.4 7.7 0.00026 37.6 7.8 71 366-442 4-76 (320)
411 2znm_A Thiol:disulfide interch 74.2 26 0.00091 30.2 10.8 42 230-277 140-181 (195)
412 4dbg_A Ranbp-type and C3HC4-ty 73.9 13 0.00043 29.9 7.7 75 361-442 16-96 (105)
413 2yan_A Glutaredoxin-3; oxidore 73.8 8.9 0.00031 30.0 6.9 66 172-255 9-83 (105)
414 3bj5_A Protein disulfide-isome 72.1 19 0.00064 30.3 8.9 62 215-277 63-128 (147)
415 1r7h_A NRDH-redoxin; thioredox 71.7 19 0.00066 25.4 7.9 66 185-271 4-73 (75)
416 1aip_C EF-TS, elongation facto 71.3 3.5 0.00012 37.0 4.1 38 12-50 5-42 (196)
417 2hze_A Glutaredoxin-1; thiored 70.0 14 0.00047 29.4 7.2 63 184-255 21-86 (114)
418 1wik_A Thioredoxin-like protei 69.7 11 0.00038 29.8 6.6 60 178-255 13-81 (109)
419 2lqo_A Putative glutaredoxin R 69.1 16 0.00054 28.3 7.1 73 183-276 6-84 (92)
420 4ajy_B Transcription elongatio 69.1 9.2 0.00031 31.5 5.9 59 372-437 5-64 (118)
421 3c1r_A Glutaredoxin-1; oxidize 68.9 8.9 0.00031 30.9 5.9 77 163-255 8-93 (118)
422 1kte_A Thioltransferase; redox 68.2 12 0.00039 29.0 6.3 59 185-255 15-79 (105)
423 1xb2_B EF-TS, elongation facto 68.1 4.1 0.00014 39.0 4.1 38 11-49 5-42 (291)
424 2wci_A Glutaredoxin-4; redox-a 66.9 14 0.00048 30.9 6.9 70 168-254 23-100 (135)
425 1h75_A Glutaredoxin-like prote 66.7 11 0.00037 27.5 5.6 71 184-276 3-74 (81)
426 1p3q_Q VPS9P, vacuolar protein 66.1 2.8 9.7E-05 29.6 1.9 44 7-50 9-52 (54)
427 3ic4_A Glutaredoxin (GRX-1); s 65.5 30 0.001 25.7 8.1 69 187-271 17-90 (92)
428 2rem_A Disulfide oxidoreductas 65.1 45 0.0015 28.5 10.2 39 231-276 146-184 (193)
429 1xiy_A Peroxiredoxin, pfaop; a 63.9 35 0.0012 29.9 9.2 30 241-272 136-178 (182)
430 3gv1_A Disulfide interchange p 63.4 9.3 0.00032 32.4 5.1 46 227-278 96-141 (147)
431 3ipz_A Monothiol glutaredoxin- 61.5 19 0.00066 28.5 6.5 65 169-246 7-79 (109)
432 1fov_A Glutaredoxin 3, GRX3; a 60.5 22 0.00076 25.7 6.3 53 185-245 4-56 (82)
433 3gx8_A Monothiol glutaredoxin- 60.0 27 0.00092 28.3 7.2 64 170-246 6-80 (121)
434 2in3_A Hypothetical protein; D 59.9 19 0.00066 31.7 6.9 47 230-278 166-212 (216)
435 2khp_A Glutaredoxin; thioredox 59.7 13 0.00044 27.9 5.0 48 184-244 8-60 (92)
436 3msz_A Glutaredoxin 1; alpha-b 59.4 18 0.0006 26.7 5.6 57 184-255 6-72 (89)
437 2wem_A Glutaredoxin-related pr 56.3 21 0.00072 28.9 5.9 65 168-246 8-82 (118)
438 3ivf_A Talin-1; FERM domain, c 52.6 55 0.0019 31.9 9.4 71 366-436 84-157 (371)
439 2klx_A Glutaredoxin; thioredox 52.0 29 0.001 25.7 5.8 52 184-245 8-60 (89)
440 1sji_A Calsequestrin 2, calseq 50.1 43 0.0015 32.0 8.1 84 187-276 252-346 (350)
441 3kzq_A Putative uncharacterize 48.5 31 0.0011 30.3 6.3 46 230-277 159-204 (208)
442 2lbc_A Ubiquitin carboxyl-term 47.0 17 0.00057 30.0 3.9 40 12-53 5-45 (126)
443 3h8q_A Thioredoxin reductase 3 46.1 54 0.0018 25.9 6.8 68 169-255 6-81 (114)
444 3qmx_A Glutaredoxin A, glutare 45.5 37 0.0013 26.3 5.5 56 182-255 17-78 (99)
445 4f82_A Thioredoxin reductase; 44.6 49 0.0017 28.9 6.7 47 180-229 47-96 (176)
446 3q8g_A CRAL-TRIO domain-contai 44.4 26 0.00089 33.6 5.4 45 4-49 34-84 (320)
447 3onh_A Ubiquitin-activating en 42.6 41 0.0014 27.8 5.4 53 388-442 20-75 (127)
448 3qij_A Protein 4.1; cytoskelet 42.2 42 0.0014 31.7 6.4 68 366-434 16-83 (296)
449 3ctg_A Glutaredoxin-2; reduced 42.1 44 0.0015 27.3 5.8 72 168-255 25-105 (129)
450 3ivf_A Talin-1; FERM domain, c 41.7 51 0.0017 32.1 7.1 69 367-438 3-76 (371)
451 1q02_A Sequestosome 1; helical 40.7 18 0.00061 25.1 2.4 36 11-48 11-48 (52)
452 1ufz_A Hypothetical protein BA 40.6 55 0.0019 25.0 5.4 46 5-50 26-75 (83)
453 1h4r_A Merlin; FERM, neurofibr 40.4 79 0.0027 29.8 8.1 69 365-436 20-88 (314)
454 3feu_A Putative lipoprotein; a 40.0 32 0.0011 29.9 4.8 43 230-276 142-184 (185)
455 2r2j_A Thioredoxin domain-cont 38.4 1E+02 0.0035 29.8 8.7 103 164-276 221-329 (382)
456 4dvc_A Thiol:disulfide interch 38.3 35 0.0012 28.8 4.7 43 230-276 140-182 (184)
457 4dbg_B Ring finger protein 31; 36.8 26 0.00087 30.3 3.4 38 9-47 101-138 (162)
458 2cos_A Serine/threonine protei 36.8 39 0.0013 23.6 3.7 37 11-49 10-47 (54)
459 2xzm_9 RPS31E; ribosome, trans 36.8 7.3 0.00025 34.8 0.0 63 369-442 2-64 (189)
460 1vkf_A Glycerol uptake operon 36.6 24 0.00083 31.4 3.4 72 167-249 43-114 (188)
461 1r5l_A Alpha-TTP, protein (alp 36.4 20 0.0007 32.8 3.1 45 4-49 3-56 (262)
462 3us3_A Calsequestrin-1; calciu 36.4 1.6E+02 0.0054 28.3 9.7 94 180-277 247-349 (367)
463 2i1j_A Moesin; FERM, coiled-co 35.8 1.1E+02 0.0036 32.0 8.7 69 366-436 3-71 (575)
464 1aua_A Phosphatidylinositol tr 35.7 49 0.0017 30.9 5.7 45 4-49 25-75 (296)
465 3zyw_A Glutaredoxin-3; metal b 33.9 91 0.0031 24.6 6.3 65 169-246 5-77 (111)
466 2h8l_A Protein disulfide-isome 33.8 1.1E+02 0.0038 27.5 7.7 56 217-276 169-230 (252)
467 1ef1_A Moesin; membrane, FERM 33.5 1.3E+02 0.0043 28.0 8.2 67 368-436 2-68 (294)
468 3bci_A Disulfide bond protein 32.2 50 0.0017 28.2 4.8 40 230-276 139-178 (186)
469 3f4s_A Alpha-DSBA1, putative u 31.4 72 0.0025 28.7 5.9 47 230-277 160-212 (226)
470 3nzn_A Glutaredoxin; structura 31.4 1.7E+02 0.0058 22.2 8.5 71 186-271 26-101 (103)
471 2j9u_A VPS28, vacuolar protein 30.4 26 0.00089 27.6 2.2 26 20-49 68-93 (96)
472 3kts_A Glycerol uptake operon 30.3 43 0.0015 29.8 4.0 99 166-276 40-150 (192)
473 3l4n_A Monothiol glutaredoxin- 30.2 1.1E+02 0.0037 24.9 6.3 62 172-246 6-76 (127)
474 2j9w_A VPS28, VPS28-PROV prote 30.1 26 0.00089 27.9 2.2 25 21-49 74-98 (102)
475 3gha_A Disulfide bond formatio 29.4 70 0.0024 28.1 5.4 42 230-278 153-194 (202)
476 2h8l_A Protein disulfide-isome 28.3 2.9E+02 0.0099 24.6 9.6 93 167-273 12-110 (252)
477 3gmf_A Protein-disulfide isome 27.9 69 0.0024 28.4 5.0 42 230-278 157-199 (205)
478 1olm_A SEC14-like protein 2; l 27.8 76 0.0026 31.1 5.8 46 3-49 6-58 (403)
479 4gqw_A CBS domain-containing p 27.5 1.7E+02 0.0059 23.1 7.2 61 207-275 85-145 (152)
480 3v7o_A Minor nucleoprotein VP3 26.5 14 0.00047 33.7 0.0 68 365-440 19-87 (227)
481 2l9b_A MRNA 3'-END-processing 26.3 29 0.001 28.0 1.9 34 3-37 47-80 (109)
482 3gn3_A Putative protein-disulf 25.3 42 0.0015 29.2 3.0 38 230-271 144-181 (182)
483 1aba_A Glutaredoxin; electron 25.1 1.1E+02 0.0038 22.4 5.1 45 191-246 13-70 (87)
484 3p04_A Uncharacterized BCR; SE 24.1 42 0.0014 25.9 2.3 36 162-197 8-45 (87)
485 3pvl_A Myosin VIIA isoform 1; 23.3 1.3E+02 0.0044 31.9 6.8 48 367-414 263-310 (655)
486 3sl7_A CBS domain-containing p 22.3 1.7E+02 0.006 24.0 6.4 64 206-277 97-160 (180)
487 2p9m_A Hypothetical protein MJ 22.0 1.8E+02 0.0062 22.7 6.2 101 165-273 23-136 (138)
488 1t1v_A SH3BGRL3, SH3 domain-bi 21.9 1.7E+02 0.0057 21.8 5.6 56 183-246 4-66 (93)
489 3lqn_A CBS domain protein; csg 21.6 1E+02 0.0035 24.8 4.6 62 205-276 85-146 (150)
490 3dnf_A ISPH, LYTB, 4-hydroxy-3 21.6 2.6E+02 0.009 26.5 7.9 104 166-278 169-281 (297)
491 1z6m_A Conserved hypothetical 21.4 1.1E+02 0.0037 25.5 4.9 36 230-272 139-174 (175)
492 2xhf_A Peroxiredoxin 5; oxidor 21.3 1.9E+02 0.0064 24.8 6.4 57 179-238 41-100 (171)
493 3dwa_A SUBB, subtilase cytotox 21.2 1.8E+02 0.006 23.8 5.6 49 165-225 53-104 (126)
494 2d3g_P Ubiquitin interacting m 21.0 70 0.0024 18.7 2.2 16 309-324 3-18 (26)
495 2o16_A Acetoin utilization pro 21.0 3.3E+02 0.011 22.0 7.9 64 204-276 75-138 (160)
496 3hz8_A Thiol:disulfide interch 20.7 1.4E+02 0.0049 25.6 5.7 42 228-276 142-183 (193)
497 3uf8_A Ubiquitin-like protein 20.6 3.9E+02 0.013 23.5 8.6 69 358-437 14-83 (209)
498 3kxr_A Magnesium transporter, 20.2 1.3E+02 0.0044 26.3 5.3 102 166-276 70-177 (205)
499 3t58_A Sulfhydryl oxidase 1; o 20.0 2.3E+02 0.0079 28.9 7.8 78 178-269 155-232 (519)
No 1
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=9.3e-28 Score=218.88 Aligned_cols=129 Identities=21% Similarity=0.280 Sum_probs=120.0
Q ss_pred HHHHHhhcCCCCcCcccCcHHHHHHHH----HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecC
Q 013325 150 RDNLASLYRPPFHLMFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDD 225 (445)
Q Consensus 150 ~~~l~~~f~pp~~~~~~gs~~eA~~~A----k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~ 225 (445)
.+.|+++|+++||.||.|+|++|++.| ++++||||||||+++|++|+. ||++||||++|+++|++|||+|++|++
T Consensus 21 ~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~-f~~~~L~~~~V~~~l~~nfV~w~~dv~ 99 (178)
T 2ec4_A 21 TAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNV-FCSQMLCAESIVSYLSQNFITWAWDLT 99 (178)
T ss_dssp HHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHH-HHHHTTTCHHHHHHHHHTEEEEEEECC
T ss_pred HHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHH-HHHHhcCCHHHHHHHHcCEEEEEEeCC
Confidence 456889999999999999999999999 999999999999999999999 999999999999999999999999999
Q ss_pred Chh-------------HHHHHHH---cCCCCCcEEEEEeCCCC--ceeEEEecCCChHHHHHHHHhhhhcCC
Q 013325 226 TSE-------------GKKVCTY---YKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 226 s~e-------------g~~~~~~---y~v~~~P~l~ii~p~tg--~~~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
++| |+.++.. |++..||+++||+++.+ +++.++.|.+++++|++.|+.+++.+.
T Consensus 100 ~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~ 171 (178)
T 2ec4_A 100 KDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT 171 (178)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999 5567665 89999999999998744 578999999999999999999999773
No 2
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.94 E-value=3.2e-27 Score=210.37 Aligned_cols=132 Identities=43% Similarity=0.862 Sum_probs=125.4
Q ss_pred CcchHHHHHhhcCCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecC
Q 013325 146 ADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDD 225 (445)
Q Consensus 146 ~~~~~~~l~~~f~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~ 225 (445)
++++..+|+.+|+||+.++|.++|++|++.|++++|||||+++++||+.|+. |+++||+|++|.++|++|||+|+++++
T Consensus 8 ~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~-me~~vf~d~~V~~~l~~~fv~v~~d~~ 86 (153)
T 2dlx_A 8 IDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQC-LNRDVWSNEAVKNIIREHFIFWQVYHD 86 (153)
T ss_dssp CCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHH-HHHHTTTCHHHHHHHHHTEEEEEEESS
T ss_pred CCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHH-HHHHhcCCHHHHHHHHcCeEEEEEecC
Confidence 4566778999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcCC
Q 013325 226 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 226 s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
++++..+++.|++..+|+++||+|.+|+.+..|.| +++++|+..|..+++.+.
T Consensus 87 ~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~ 139 (153)
T 2dlx_A 87 SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG 139 (153)
T ss_dssp SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred CHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988988888877 899999999999999874
No 3
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.86 E-value=1.7e-21 Score=163.35 Aligned_cols=88 Identities=26% Similarity=0.473 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCCCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchh
Q 013325 352 AYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFE 431 (445)
Q Consensus 352 ~~~~lp~EP~~~~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~ 431 (445)
+...+|+||..+.+++|+||||||||+|++|||+.+++|++||+||+++ ++....|.|+++||||. +..+.++||+
T Consensus 8 ~~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~--l~~d~~~TL~ 83 (109)
T 2cr5_A 8 EVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRA--LEVEGGSSLE 83 (109)
T ss_dssp CCCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCB--CCCCSSCBHH
T ss_pred ccccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEEeCCCCcC--CCCCCCCCHH
Confidence 4568999999887889999999999999999999999999999999986 45678999999999997 5557899999
Q ss_pred hcCCcCceEEEE
Q 013325 432 DSGLANAMISVT 443 (445)
Q Consensus 432 e~gL~~~~v~v~ 443 (445)
|+||.|+++|++
T Consensus 84 e~gL~p~a~L~V 95 (109)
T 2cr5_A 84 DIGITVDTVLNV 95 (109)
T ss_dssp HHTCSSCEEEEE
T ss_pred HcCCCCCeEEEE
Confidence 999998665543
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.77 E-value=1.5e-18 Score=145.23 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=71.0
Q ss_pred CCCCCCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-c
Q 013325 360 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-A 438 (445)
Q Consensus 360 P~~~~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~ 438 (445)
|..+.++.|+||||||||+|++|||+.++||++||+||+++. +....+|.|+++||||.+. ..|.++||+|+||.| +
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~-~~~~~~f~L~t~fPrk~l~-~~d~~~TL~elgL~psa 83 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTV-GNTYGNFSLATMFPRREFT-REDYKRRLLDLELAPSA 83 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHH-TTSSCSCEEECSSSCCBCC-TTTTTSBTGGGTCSSEE
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcc-CCCCCceEEEcCCCCcCCc-ccccCCCHHHCCCCCce
Confidence 344556799999999999999999999999999999999975 4456899999999999733 236899999999997 5
Q ss_pred eEEEEeC
Q 013325 439 MISVTWE 445 (445)
Q Consensus 439 ~v~v~~~ 445 (445)
+|+|+|.
T Consensus 84 ~L~v~~~ 90 (109)
T 2dzk_A 84 SVVLLPA 90 (109)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 6777773
No 5
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.76 E-value=2.2e-18 Score=137.70 Aligned_cols=75 Identities=17% Similarity=0.390 Sum_probs=65.6
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 442 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v 442 (445)
+++|+||||||||+|++|||+.+++|++||+||.+. ++...+|.|+++||||.+. ..|.++||+|+||.|+++++
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~ 79 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLF 79 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT--TCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc--CCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEE
Confidence 568999999999999999999999999999999985 4568899999999999732 35789999999999755443
No 6
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.76 E-value=1.1e-18 Score=150.13 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEEe
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 444 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~~ 444 (445)
.+.|+||||||||+|++|||+.+++|++||+||+++..++....|.|+++|||+. +. +.++||+|+||.|++|+++|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~--l~-d~~~TL~eagL~psavl~k~ 126 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKE--LA-DENQTLKEANLLNAVIVQRL 126 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEE--CC-STTCBHHHHTCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCC--CC-CCCCcHHHCCCcCceEEEEe
Confidence 4589999999999999999999999999999999976555578999999999986 43 67999999999999999999
Q ss_pred C
Q 013325 445 E 445 (445)
Q Consensus 445 ~ 445 (445)
+
T Consensus 127 ~ 127 (127)
T 1s3s_G 127 T 127 (127)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.71 E-value=2.3e-17 Score=141.03 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCCCCCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCC-CCcCCchhhcCCcC-
Q 013325 360 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN- 437 (445)
Q Consensus 360 P~~~~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~-~~~~~Tl~e~gL~~- 437 (445)
|..+.++.|+||||||||+|++|||+.+++|++||+||+++ ++....|.|+++||||. +. .|.++||+|+||.|
T Consensus 36 ~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~--l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 36 GIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRK--LSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp CCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCE--ETSSCSSSCTTTTTCCSS
T ss_pred ccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcC--CccCCCCCCHHHCCCCCc
Confidence 33445679999999999999999999999999999999986 55678999999999997 43 47899999999996
Q ss_pred ceEEEEe
Q 013325 438 AMISVTW 444 (445)
Q Consensus 438 ~~v~v~~ 444 (445)
++|+|++
T Consensus 112 a~Liv~~ 118 (124)
T 1wj4_A 112 ETVFVQE 118 (124)
T ss_dssp BCCEEEE
T ss_pred eEEEEEE
Confidence 6667664
No 8
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.28 E-value=1e-11 Score=111.19 Aligned_cols=113 Identities=11% Similarity=0.208 Sum_probs=99.6
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh---------------
Q 013325 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------- 228 (445)
Q Consensus 164 ~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e--------------- 228 (445)
....+|++++..|+.++|++||+++.+||..|+. |...+|.++.+.++++++|++..++.+...
T Consensus 31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~-~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~ 109 (172)
T 3f9u_A 31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRK-MELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTER 109 (172)
T ss_dssp CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHH-HHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEE
T ss_pred cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHH-HHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhh
Confidence 3557899999999999999999999999999999 999999999999999999999999987543
Q ss_pred ---------HHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCC-hHHHHHHHHhhhhcC
Q 013325 229 ---------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ-PESLLEDLVPFMDGG 278 (445)
Q Consensus 229 ---------g~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~-~~~~l~~L~~~~~~~ 278 (445)
+...+..|++..+|+++||++ .|+++.++.|..+ +++|+..|.+.++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~~~G~~~~~~~l~~~l~~~l~~~ 168 (172)
T 3f9u_A 110 TLRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNKSYAYDEDISKYINFLQTGLENY 168 (172)
T ss_dssp EEEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence 111267899999999999996 6998888889988 999999999988754
No 9
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=5.8e-11 Score=100.73 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=101.1
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 164 ~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
+...+|++++..|...+|++||++.++||..|+. +...++.++.+.++++.+|+++.++.+..+...++..|++..+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~-~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt 89 (130)
T 2kuc_A 11 FRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKR-LSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPT 89 (130)
T ss_dssp CBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHH-HHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCE
T ss_pred cccCCHHHHHHHHHhcCCeEEEEEECCCCccHHH-HHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCE
Confidence 3568999999999999999999999999999999 988888889999999999999999988767788999999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
++|+++ .|+++.++.|..+.++|...|...+..
T Consensus 90 ~~~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 90 LLFINS-SGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp EEEECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred EEEECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 999985 689999999999999999888887763
No 10
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.6e-11 Score=91.65 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=43.6
Q ss_pred CCCChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 3 ~~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
..|++.+ +++|.+||+| ||+++++|++||+++||||+.||++||+.++.
T Consensus 9 ~~~s~~~-~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 9 SAASSAL-KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp CSSCHHH-HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred hhcCccH-HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 4677777 5599999999 89999999999999999999999999997654
No 11
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.21 E-value=1.9e-11 Score=108.10 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=93.7
Q ss_pred CcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 163 ~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
+-+..+|++|++.|++++|++||+++.+||.+|+. |...++.++.+.++++.+||...++.+..+ .+..|++..+|
T Consensus 27 i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~-m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~~~v~~~P 102 (151)
T 3ph9_A 27 ITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQA-LKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLSPDGQYVP 102 (151)
T ss_dssp SCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHH-HHHHHHHCHHHHHHHHHTCEEEEESSCCSC---GGGCTTCCCSS
T ss_pred CcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHH-HHHHHhcCHHHHHHhhcCeEEEEecCCchh---hHhhcCCCCCC
Confidence 34668999999999999999999999999999999 999999999999999889999987744333 35678899999
Q ss_pred EEEEEeCCCCceeEEEecC-------C---ChHHHHHHHHhhhhcC
Q 013325 243 VVLVVDPITGQKMRSWCGM-------V---QPESLLEDLVPFMDGG 278 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~-------~---~~~~~l~~L~~~~~~~ 278 (445)
+++|+++ .|+++.++.|. . +.+.+++.+..++.++
T Consensus 103 T~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 103 RIMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp EEEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred EEEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 9999997 58888888887 3 4566777777777655
No 12
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.20 E-value=4e-12 Score=87.85 Aligned_cols=42 Identities=21% Similarity=0.427 Sum_probs=35.9
Q ss_pred hhhHHHHHHhhhccccCCC-HHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 7 ANDKQSMVSSFLEIAVGQT-AETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 7 ~~~~~~~v~~F~~iTt~~~-~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
+.+++++|++|++| ||++ +++|++||++|||||+.||+.||-
T Consensus 2 ~~d~de~ia~F~~i-TG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 2 SMDREMILADFQAC-TGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp -CCHHHHHHHHHHH-HCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cccHHHHHHHHHHH-HCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 34678899999999 7776 599999999999999999999984
No 13
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.19 E-value=2.4e-10 Score=100.73 Aligned_cols=107 Identities=10% Similarity=0.163 Sum_probs=96.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh---------hHHHHHHHc
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS---------EGKKVCTYY 236 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~---------eg~~~~~~y 236 (445)
.++.+++..++.++|++||++. .+||..|+. +...++.++.+.++.+.+|+++.++.+.. ....++..|
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~-~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~ 112 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIK-MQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQY 112 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHH-HHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHH-HHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHc
Confidence 8899999999999999999999 899999999 99999998999998888999999998763 356789999
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCC--ChHHHHHHHHhhhh
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD 276 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~--~~~~~l~~L~~~~~ 276 (445)
++..+|+++|+++ +|+++.++ |.. +.+.|+..|...+.
T Consensus 113 ~v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 113 KVTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp TCCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 9999999999995 69999999 988 89999998888765
No 14
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.18 E-value=1.7e-11 Score=86.01 Aligned_cols=41 Identities=27% Similarity=0.598 Sum_probs=38.3
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
++++|.+|++| ||+++++|++||+++||||+.||+.||+.+
T Consensus 5 ~~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 46699999999 899999999999999999999999999864
No 15
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.6e-11 Score=91.80 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=43.4
Q ss_pred CCCChhhHHHHHHhhhccccC-CCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 3 SVLSANDKQSMVSSFLEIAVG-QTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 3 ~~l~~~~~~~~v~~F~~iTt~-~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
..|+..+ +++|.+||+| || +++++|++||+++||||+.||+.||+..++
T Consensus 12 ~~Ls~~~-~e~i~qF~~I-Tg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 12 RDLTQEQ-TEKLLQFQDL-TGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEG 61 (67)
T ss_dssp CCCCHHH-HHHHHHHHHH-HCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred hhcChhH-HHHHHHHHHH-hCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4678876 5599999999 67 899999999999999999999999997654
No 16
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.79 E-value=2.4e-12 Score=109.53 Aligned_cols=109 Identities=19% Similarity=0.282 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
.+++..|..++|++||+++++||..|+. +...++.++.+.+.++.+|+++.++.+..+...++..|++..+|+++|+++
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~-~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~ 87 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQ-MNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVP 87 (130)
Confidence 8999999999999999999999999999 999999999999999989999999998788888999999999999999998
Q ss_pred CCCce--eEEEecCCChHHHHHHHHhhhhcCC
Q 013325 250 ITGQK--MRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 250 ~tg~~--~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
.+|++ +.++.|..+++.|...|...+....
T Consensus 88 ~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~ 119 (130)
T 2lst_A 88 KAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG 119 (130)
Confidence 88988 8899999999999988888877553
No 17
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=99.14 E-value=1.1e-10 Score=105.33 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=87.2
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHc--------
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY-------- 236 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y-------- 236 (445)
+.-.+++|++.|++++|++||++..+||..|+. |...+|.+++|.++++++||++.+|.+.. ..++..|
T Consensus 24 W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~-m~~~~f~~~~va~~l~~~fv~ikVD~de~--~~l~~~y~~~~q~~~ 100 (173)
T 3ira_A 24 WYPWGEEAFEKARKENKPVFLSIGYSTCHWCHM-MAHESFEDEEVAGLMNEAFVSIKVDREER--PDIDNIYMTVCQIIL 100 (173)
T ss_dssp CBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHH-HHHHTTTCHHHHHHHHHHCEEEEEETTTC--HHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCEEEecccchhHhhcc-ccccccCCHHHHHHHHhcCceeeeCCccc--CcHHHHHHHHHHHHc
Confidence 556679999999999999999999999999999 99999999999999999999999988642 3344445
Q ss_pred CCCCCcEEEEEeCCCCceeEEEe-----cCCChHHHHHHHHhhhhcC
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWC-----GMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~-----G~~~~~~~l~~L~~~~~~~ 278 (445)
++..+|+++|++| .|+.+.... |..+...|+..|..+.+.+
T Consensus 101 gv~g~Pt~v~l~~-dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~ 146 (173)
T 3ira_A 101 GRGGWPLNIIMTP-GKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIW 146 (173)
T ss_dssp SCCCSSEEEEECT-TSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHH
T ss_pred CCCCCcceeeECC-CCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHH
Confidence 8999999999997 588776532 1123345666666555433
No 18
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.01 E-value=1.6e-09 Score=92.27 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-hhHHHHHHHcCC---CCCc
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKL---DSIP 242 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-~eg~~~~~~y~v---~~~P 242 (445)
.+|++++..|+.++|++||+++++||..|+. +.. +|.++.+...++.++.++.++++. .+...++..|++ ..+|
T Consensus 16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~-~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~P 93 (133)
T 3fk8_A 16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRA-LDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIP 93 (133)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHH-HHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSS
T ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHH-HHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccc
Confidence 4789999999999999999999999999999 765 688889999998899999988843 345678999999 9999
Q ss_pred EEEEEeCCCCceeEEEec-------CCChHHHHHHHHhh
Q 013325 243 VVLVVDPITGQKMRSWCG-------MVQPESLLEDLVPF 274 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G-------~~~~~~~l~~L~~~ 274 (445)
+++++++ +|+++.+..| ..+.+++.+.|...
T Consensus 94 t~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 94 AVVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp EEEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred eEEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 9999995 6999988888 56777666655543
No 19
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=4.9e-10 Score=84.41 Aligned_cols=40 Identities=30% Similarity=0.610 Sum_probs=37.9
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
++|.+|++| ||+++++|++||++++||||.||+.||+.++
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 699999999 8999999999999999999999999998654
No 20
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=98.97 E-value=2.7e-09 Score=91.48 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=89.8
Q ss_pred CCCc-CcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC--hhHHHHHHH
Q 013325 159 PPFH-LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTY 235 (445)
Q Consensus 159 pp~~-~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s--~eg~~~~~~ 235 (445)
|+|. +--...|..++..+ .+|++||+++++||..|+. +...++.++.+.+.++ ++.++.++.+. .+...++..
T Consensus 11 ~~f~~~~~~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~-~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~ 86 (134)
T 2fwh_A 11 LNFTQIKTVDELNQALVEA--KGKPVMLDLYADWCVACKE-FEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKH 86 (134)
T ss_dssp CCCEECCSHHHHHHHHHHH--TTSCEEEEEECTTCHHHHH-HHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHH
T ss_pred CCcEEecCHHHHHHHHHHh--cCCcEEEEEECCCCHHHHH-HHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHH
Confidence 5553 22234556666544 3899999999999999999 9888889899988887 48888888866 567789999
Q ss_pred cCCCCCcEEEEEeCCCCcee--EEEecCCChHHHHHHHHhhhh
Q 013325 236 YKLDSIPVVLVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 236 y~v~~~P~l~ii~p~tg~~~--~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|++..+|+++|+++ .|+++ .++.|..+.++|.+.|..+--
T Consensus 87 ~~v~~~Pt~~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~~~~ 128 (134)
T 2fwh_A 87 LNVLGLPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRDRQP 128 (134)
T ss_dssp TTCCSSSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred cCCCCCCEEEEECC-CCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence 99999999999995 68887 688999999998887766543
No 21
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=98.68 E-value=1.5e-07 Score=77.04 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=80.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++++..+++.+|+++|+++++||..|+. +...+ ..+.+....++.++.++.+. ...++..|++..+|++++
T Consensus 11 ~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 84 (112)
T 1ep7_A 11 AAWDAQLAKGKEEHKPIVVDFTATWCGPCKM-IAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHV 84 (112)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEE
T ss_pred HHHHHHHHhhcccCCeEEEEEECCCCHHHHH-HHHHH---HHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCcccEEEE
Confidence 5688899888888999999999999999998 65432 33444444578888877754 456889999999999877
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+. +|+.+.++.|. +++++.+.|.+.+.
T Consensus 85 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l~ 111 (112)
T 1ep7_A 85 YK--DGVKADDLVGA-SQDKLKALVAKHAA 111 (112)
T ss_dssp EE--TTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred EE--CCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence 73 79999999998 88888887776653
No 22
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=98.65 E-value=1.2e-07 Score=79.60 Aligned_cols=98 Identities=10% Similarity=0.137 Sum_probs=79.2
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
+...+|++||+++++||..|+. +...+ ..+.+.+..++.++.++.+..+...++..|++..+|+++|+++ +|+++
T Consensus 22 ~~~~~k~~lv~f~a~wC~~C~~-~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~-~G~~~ 96 (126)
T 2l57_A 22 EAKEGIPTIIMFKTDTCPYCVE-MQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDK-EGNKF 96 (126)
T ss_dssp TCCSSSCEEEEEECSSCHHHHH-HHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECT-TCCEE
T ss_pred HHhCCCcEEEEEECCCCccHHH-HHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECC-CCCEE
Confidence 3456899999999999999998 65433 3455555567999988854556678999999999999999996 68989
Q ss_pred EEEecCCChHHHHHHHHhhhhcC
Q 013325 256 RSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 256 ~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.++.|..+.++|.+.|...+...
T Consensus 97 ~~~~G~~~~~~l~~~l~~~~~~~ 119 (126)
T 2l57_A 97 YVHQGLMRKNNIETILNSLGVKE 119 (126)
T ss_dssp EEEESCCCHHHHHHHHHHHCCCC
T ss_pred EEecCCCCHHHHHHHHHHHhccc
Confidence 99999999999988888776643
No 23
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=98.62 E-value=2.9e-07 Score=77.62 Aligned_cols=98 Identities=12% Similarity=0.265 Sum_probs=78.5
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..+|++++..|+..+|+++|+++++||..|+. +.. .+.++.++ ++.++.++.+. ...++..|++..+|+
T Consensus 24 ~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~-~~~------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt 94 (124)
T 1xfl_A 24 VETWNEQLQKANESKTLVVVDFTASWCGPCRF-IAP------FFADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPT 94 (124)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCHHHHH-HHH------HHHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSSE
T ss_pred HHHHHHHHHHhhhcCCEEEEEEECCCCHHHHH-HHH------HHHHHHHHCCCcEEEEEECcc--CHHHHHHcCCCccCE
Confidence 45789999999999999999999999999998 643 33444333 68888877754 457889999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
++|+. .|+.+.++.| .+++++.+.|.+++
T Consensus 95 ~~~~~--~G~~~~~~~G-~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 95 FMFLK--EGKILDKVVG-AKKDELQSTIAKHL 123 (124)
T ss_dssp EEEEE--TTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred EEEEE--CCEEEEEEeC-CCHHHHHHHHHHhc
Confidence 88873 7999999999 48888887776654
No 24
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=98.61 E-value=4.5e-07 Score=74.65 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=80.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
-..+|++++ .+|++||+++++||..|+. +...+ ..+.+.+..++.++.++.+.. ..++..|++..+|++
T Consensus 7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~-~~~~l---~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~ 75 (112)
T 2voc_A 7 TDQSFSAET-----SEGVVLADFWAPWCGPSKM-IAPVL---EELDQEMGDKLKIVKIDVDEN--QETAGKYGVMSIPTL 75 (112)
T ss_dssp CTTTHHHHH-----SSSEEEEEEECTTBGGGGG-HHHHH---HHHHHHHTTTCEEEEEETTTC--CSHHHHTTCCSBSEE
T ss_pred cHHHHHHHh-----CCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCCcccEE
Confidence 345677777 7899999999999999999 65443 455556666788888887653 357889999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+++ .+|+.+.++.|..+.++|.+.|...+...
T Consensus 76 ~~~--~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 107 (112)
T 2voc_A 76 LVL--KDGEVVETSVGFKPKEALQELVNKHLLEH 107 (112)
T ss_dssp EEE--ETTEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred EEE--eCCEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence 999 37999999999999998888777666543
No 25
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.59 E-value=2.6e-07 Score=74.79 Aligned_cols=99 Identities=20% Similarity=0.356 Sum_probs=76.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
-..+|++++ .++|++||+++++||..|+. +... | ..+.+....++.+..++.+ +...++..|++..+|++
T Consensus 10 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~-~~~~-~--~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~~Pt~ 79 (109)
T 3tco_A 10 TEENFDEVI----RNNKLVLVDCWAEWCAPCHL-YEPI-Y--KKVAEKYKGKAVFGRLNVD--ENQKIADKYSVLNIPTT 79 (109)
T ss_dssp CTTTHHHHH----HHSSEEEEEEECTTCHHHHH-HHHH-H--HHHHHHTTTTSEEEEEETT--TCHHHHHHTTCCSSSEE
T ss_pred cHHHHHHHH----hcCCeEEEEEECCCCHHHHh-hhHH-H--HHHHHHhCCCceEEEEccc--cCHHHHHhcCcccCCEE
Confidence 345677666 34899999999999999999 6432 2 3344444456888877775 44578999999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+++ .+|+.+.++.|..+.++|...|...+
T Consensus 80 ~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 80 LIF--VNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEE--ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEE--cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 999 36999999999999999988887765
No 26
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=98.59 E-value=3e-07 Score=76.46 Aligned_cols=101 Identities=25% Similarity=0.307 Sum_probs=77.2
Q ss_pred CCcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcC
Q 013325 160 PFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYK 237 (445)
Q Consensus 160 p~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~ 237 (445)
..+..-..+|++++..+ .+|++||+++.+||..|+. +. +.+.++.++ ++.|..++.+. ...++..|+
T Consensus 13 ~~~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~-~~------p~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~ 81 (116)
T 3qfa_C 13 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKM-IK------PFFHSLSEKYSNVIFLEVDVDD--CQDVASECE 81 (116)
T ss_dssp CBCCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHH-HH------HHHHHHHTTCTTSEEEEEETTT--THHHHHHTT
T ss_pred ccCCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHH-HH------HHHHHHHHHCCCCEEEEEECCC--CHHHHHHcC
Confidence 33344456777776543 7899999999999999998 64 344444443 37888777754 567899999
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+..+|+++|+ ..|+.+.++.|. +++.|.+.|.+.
T Consensus 82 v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 82 VKSMPTFQFF--KKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp CCSSSEEEEE--SSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred CccccEEEEE--eCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 9999999888 469999999998 888888877664
No 27
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.55 E-value=5.9e-07 Score=72.42 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=77.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
-..+|++++ .+|+++|+++++||..|+. +...+ ..+.+.+..++.+..++.+. ...++..|++..+|++
T Consensus 9 ~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~-~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~ 77 (106)
T 3die_A 9 TDADFDSKV-----ESGVQLVDFWATACGPCKM-IAPVL---EELAADYEGKADILKLDVDE--NPSTAAKYEVMSIPTL 77 (106)
T ss_dssp CTTTHHHHS-----CSSEEEEEEECSBCHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSBSEE
T ss_pred CHHHHHHHh-----cCCcEEEEEECCCCHHHHH-HhHHH---HHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcccCEE
Confidence 456777777 7899999999999999999 75433 45555556668888777654 4568899999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+++. .|+.+.++.|..+.+++...|.+.
T Consensus 78 ~~~~--~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 78 IVFK--DGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEEE--TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred EEEe--CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 9996 799999999999999888877654
No 28
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=98.55 E-value=5.5e-07 Score=74.96 Aligned_cols=106 Identities=12% Similarity=0.232 Sum_probs=80.8
Q ss_pred CcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCC
Q 013325 161 FHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS 240 (445)
Q Consensus 161 ~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~ 240 (445)
..+.-..+|++++..|+..+|+++|+++++||..|+. +.. +| ..+.+... ++.+..++.+. ...++..|++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~-~~~-~l--~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~ 87 (122)
T 2vlu_A 15 ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRI-MAP-VF--ADLAKKFP-NAVFLKVDVDE--LKPIAEQFSVEA 87 (122)
T ss_dssp EEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH-HHH-HH--HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCS
T ss_pred eeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHH-HHH-HH--HHHHHHCC-CcEEEEEECCC--CHHHHHHcCCCc
Confidence 3344556899999999999999999999999999998 643 22 12322222 37788777754 456889999999
Q ss_pred CcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 241 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+|+++++. +|+.+.++.|.. .++|...|...+.
T Consensus 88 ~Pt~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 88 MPTFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAA 120 (122)
T ss_dssp SSEEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred ccEEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence 99988773 799999999988 8888888777654
No 29
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=98.54 E-value=4.5e-07 Score=74.71 Aligned_cols=101 Identities=17% Similarity=0.307 Sum_probs=80.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
-..+|++++..|+..+|+++|+++++||..|+. +. +.+.++.++ ++.+..++.+. ...++..|++..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~-~~------~~l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~P 83 (118)
T 2vm1_A 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRV-IA------PVFAEYAKKFPGAIFLKVDVDE--LKDVAEAYNVEAMP 83 (118)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHH-HH------HHHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSBS
T ss_pred CHHHHHHHHHhcccCCCEEEEEEECCCCHhHHH-Hh------HHHHHHHHHCCCcEEEEEEccc--CHHHHHHcCCCcCc
Confidence 346899999999999999999999999999998 64 334444443 67888777754 45788999999999
Q ss_pred EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 243 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+++++. +|+.+.++.| .+++++...|.+++..
T Consensus 84 t~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 84 TFLFIK--DGEKVDSVVG-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp EEEEEE--TTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred EEEEEe--CCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence 998884 7998989999 5888888888877653
No 30
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=98.54 E-value=3.2e-07 Score=74.11 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=72.7
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.+.+.+|+++|+++++||..|+. +...+ ..+.+....++.+..++.+. ...++..|++..+|+++++. .|+.
T Consensus 12 ~~~~~~~~~~v~f~~~~C~~C~~-~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~ 83 (105)
T 1nsw_A 12 QAIQGDGPVLVDFWAAWCGPCRM-MAPVL---EEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILFK--GGRP 83 (105)
T ss_dssp HHHSSSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEE
T ss_pred HHHhCCCcEEEEEECCCCHHHHH-HHHHH---HHHHHHhcCCcEEEEEECcC--CHHHHHHcCCccccEEEEEe--CCeE
Confidence 34467899999999999999998 65433 34555555568888777754 45688999999999999993 6898
Q ss_pred eEEEecCCChHHHHHHHHhhh
Q 013325 255 MRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+.++.|..+++.|...|...+
T Consensus 84 ~~~~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 84 VKQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EEEEESCCCHHHHHHHTTTTT
T ss_pred EEEEecCCCHHHHHHHHHHHh
Confidence 989999999888877766544
No 31
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=98.54 E-value=5.6e-07 Score=75.00 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
++......+.+|++||+++++||..|+. +...+ ..+.+-+..++.++.++.+. ...++..|++..+|+++|+
T Consensus 21 ~~f~~~v~~~~k~vlv~f~a~~C~~C~~-~~~~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-- 92 (119)
T 1w4v_A 21 PDFQDRVVNSETPVVVDFHAQWCGPCKI-LGPRL---EKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSAVPTVLAM-- 92 (119)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTSSEEEEEETTT--THHHHHHTTCCSSSEEEEE--
T ss_pred hhHHHHHHcCCCcEEEEEECCCCHHHHH-HHHHH---HHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCcccEEEEE--
Confidence 3333444567899999999999999999 65432 23444444578888887764 3468899999999999998
Q ss_pred CCCceeEEEecCCChHHHHHHHHhhh
Q 013325 250 ITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 250 ~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
.+|+++.++.|..+.+.|...|.+.+
T Consensus 93 ~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 93 KNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 37999999999999998888887665
No 32
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=98.53 E-value=8.6e-07 Score=72.14 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=74.4
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
..+|+++|+++++||..|+. +...+ +.+.+....++.+..++.+. ...++..|++..+|+++++. .|+.+.+
T Consensus 20 ~~~~~vlv~f~a~~C~~C~~-~~~~~---~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~g~~~~~ 91 (111)
T 3gnj_A 20 DEGKACLVMFSRKNCHVCQK-VTPVL---EELRLNYEESFGFYYVDVEE--EKTLFQRFSLKGVPQILYFK--DGEYKGK 91 (111)
T ss_dssp TSCCCEEEEEECSSCHHHHH-HHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSCEEEEEE--TTEEEEE
T ss_pred hcCCEEEEEEeCCCChhHHH-HHHHH---HHHHHHcCCceEEEEEECCc--ChhHHHhcCCCcCCEEEEEE--CCEEEEE
Confidence 67899999999999999999 75433 44555555578888878765 45788999999999999994 6999999
Q ss_pred EecCCChHHHHHHHHhhhh
Q 013325 258 WCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 258 ~~G~~~~~~~l~~L~~~~~ 276 (445)
+.|..+.+.|...|.+.+.
T Consensus 92 ~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 92 MAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHHhc
Confidence 9999999999988887764
No 33
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=98.53 E-value=8.7e-08 Score=80.54 Aligned_cols=95 Identities=4% Similarity=-0.047 Sum_probs=78.5
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEe
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 259 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~ 259 (445)
.++.||++..+||..|+. |.+.|.....+....+ .+.+..++++......++..|++...|++++++ +|+.+.++.
T Consensus 18 ~~~~LV~F~A~wC~~Ck~-~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~--~G~ev~Ri~ 93 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCAR-WDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELARPVTFTPTFVLMA--GDVESGRLE 93 (116)
T ss_dssp -CEEEEEEECTTCHHHHH-HHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEE--TTEEEEEEE
T ss_pred CCCEEEEEECCCCHHHHH-HHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHCCCCCCCEEEEEE--CCEEEeeec
Confidence 478999999999999999 9988888877655544 355566677765555677789999999999999 799999999
Q ss_pred cCCChHHHHHHHHhhhhcC
Q 013325 260 GMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 260 G~~~~~~~l~~L~~~~~~~ 278 (445)
|+.+++.|+..|...+...
T Consensus 94 G~~~~~~f~~~L~~~l~~~ 112 (116)
T 3dml_A 94 GYPGEDFFWPMLARLIGQA 112 (116)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999887643
No 34
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.53 E-value=8.1e-07 Score=71.74 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=76.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++++ +.+|+++|++++++|..|+. +...+ ..+.+.+..++.++.++.+. ...++..|++..+|++++
T Consensus 9 ~~~~~~~----~~~~~~lv~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 78 (109)
T 2yzu_A 9 QNFDETL----GQHPLVLVDFWAEWCAPCRM-IAPIL---EEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMSIPTVIL 78 (109)
T ss_dssp TTHHHHH----HHCSEEEEEEECTTCHHHHH-HHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred hHHHHHh----cCCCeEEEEEECCCCHHHHH-hhHHH---HHHHHHhhCceEEEEEECCC--CHhHHHhCCCCcCCEEEE
Confidence 4555443 56899999999999999998 75432 44555555578888888765 346889999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+ .+|+.+.++.|..+.+.|...|...+.
T Consensus 79 ~--~~g~~~~~~~g~~~~~~l~~~l~~~l~ 106 (109)
T 2yzu_A 79 F--KDGQPVEVLVGAQPKRNYQAKIEKHLP 106 (109)
T ss_dssp E--ETTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred E--eCCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence 9 379988899999999988888876654
No 35
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=98.52 E-value=5.4e-07 Score=74.13 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
.|++++..+ .+|+++|+++.+||.+|+. |.. .+.++-+ .+++|+.+|++ +...++..|++.++|+++
T Consensus 10 ~f~~~l~~~--~~k~vvv~F~a~wC~~C~~-~~p------~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~V~~~PT~~ 78 (105)
T 3zzx_A 10 DFTKQLNEA--GNKLVVIDFYATWCGPCKM-IAP------KLEELSQSMSDVVFLKVDVD--ECEDIAQDNQIACMPTFL 78 (105)
T ss_dssp HHHHHHHHT--TTSEEEEEEECTTCHHHHH-HHH------HHHHHHHHCTTEEEEEEETT--TCHHHHHHTTCCBSSEEE
T ss_pred HHHHHHHhc--CCCEEEEEEECCCCCCccC-CCc------chhhhhhccCCeEEEEEecc--cCHHHHHHcCCCeecEEE
Confidence 566666543 5799999999999999999 643 3333332 36888877775 456799999999999998
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
++. .|+.+.++.|. ++++|.+.|.
T Consensus 79 ~~~--~G~~v~~~~G~-~~~~l~~~i~ 102 (105)
T 3zzx_A 79 FMK--NGQKLDSLSGA-NYDKLLELVE 102 (105)
T ss_dssp EEE--TTEEEEEEESC-CHHHHHHHHH
T ss_pred EEE--CCEEEEEEeCc-CHHHHHHHHH
Confidence 885 79999999995 7777665554
No 36
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.52 E-value=8.7e-07 Score=71.52 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=76.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|.+++ ...+|+++|+++++||..|+. +...+ ..+.+.+..++.++.++.+.. ..++..|++..+|++++
T Consensus 10 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~-~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 80 (107)
T 2i4a_A 10 SSFDQDV---LKASGLVLVDFWAEWCGPCKM-IGPAL---GEIGKEFAGKVTVAKVNIDDN--PETPNAYQVRSIPTLML 80 (107)
T ss_dssp TTHHHHT---TTCSSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTSEEEEEEETTTC--CHHHHHTTCCSSSEEEE
T ss_pred hhhhHHH---HhCCCEEEEEEECCCChhHHH-HhHHH---HHHHHHhCCcEEEEEEECCCC--HHHHHhcCCCccCEEEE
Confidence 4555444 367899999999999999999 75543 455555666789988887653 46888999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+ .+|+.+.++.|..+.+.+.+.|.+.
T Consensus 81 ~--~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 81 V--RDGKVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp E--ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred E--eCCEEEEEecCCCCHHHHHHHHHhc
Confidence 9 3799999999999999888777654
No 37
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.51 E-value=7.5e-07 Score=72.89 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=77.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|.+.+ ...+++++|+++++||..|+. +...+ +.+.+.+..++.++.++.+. ...++..|++..+|++++
T Consensus 15 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~-~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 85 (115)
T 1thx_A 15 AEFESEV---LKAEQPVLVYFWASWCGPCQL-MSPLI---NLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRL 85 (115)
T ss_dssp GGHHHHT---TTCSSCEEEEEECTTCTTHHH-HHHHH---HHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEE
T ss_pred cchhhHh---hcCCceEEEEEECCCCHHHHH-hHHHH---HHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCceeEEEE
Confidence 3455443 367899999999999999999 75433 45555555568888888764 346889999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+ .+|+.+..+.|..+.+.|...|.+.+.
T Consensus 86 ~--~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 86 V--KGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp E--ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred E--cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 9 379999999999999999888887765
No 38
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=98.51 E-value=4.6e-07 Score=74.05 Aligned_cols=99 Identities=13% Similarity=0.228 Sum_probs=78.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..+|++++..|+..+|+++|+++++||..|+. +.. .+.++.++ ++.++.++.+. ...++..|++..+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~-~~~------~l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt 82 (113)
T 1ti3_A 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKM-IAP------IFAELAKKFPNVTFLKVDVDE--LKAVAEEWNVEAMPT 82 (113)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEEECSSCHHHHH-HHH------HHHHHHHHCSSEEEEEEETTT--CHHHHHHHHCSSTTE
T ss_pred HHHHHHHHHHhhhcCCeEEEEEECCCCHHHHH-HHH------HHHHHHHhCCCcEEEEEEccc--cHHHHHhCCCCcccE
Confidence 45788999999889999999999999999998 643 33444433 68888777754 456788999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++++. .|+.+.++.| .+++.|...|..++.
T Consensus 83 ~~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 83 FIFLK--DGKLVDKTVG-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp EEEEE--TTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred EEEEe--CCEEEEEEec-CCHHHHHHHHHHhhc
Confidence 98884 7999999999 578888887776653
No 39
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=98.51 E-value=6.3e-07 Score=76.54 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=81.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
...+|++++..+...+|+++|+++++||..|+. +.. .+.++.+ .++.++.++.+. ...++..|++..+|
T Consensus 31 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~-~~~------~l~~l~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~P 101 (139)
T 3d22_A 31 TKERWDQKLSEASRDGKIVLANFSARWCGPSRQ-IAP------YYIELSENYPSLMFLVIDVDE--LSDFSASWEIKATP 101 (139)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHH-HHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCEES
T ss_pred CHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHH-HHH------HHHHHHHHCCCCEEEEEeCcc--cHHHHHHcCCCccc
Confidence 346899999999999999999999999999998 643 3344333 357888777764 45788999999999
Q ss_pred EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 243 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+++|+ .+|+++.++.|. ++++|...|...+..
T Consensus 102 t~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 102 TFFFL--RDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEEEE--ETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEEEE--cCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 98888 379999999998 888888888877764
No 40
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=98.50 E-value=9.2e-07 Score=71.57 Aligned_cols=94 Identities=14% Similarity=0.247 Sum_probs=73.1
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
....+.+|+++|+++++||..|+. +...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++++ .+|+
T Consensus 13 ~~~~~~~~~~lv~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~--~~G~ 84 (107)
T 1dby_A 13 NVVLESSVPVLVDFWAPWCGPCRI-IAPVV---DEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVF--KGGK 84 (107)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEE--SSSS
T ss_pred HHHhcCCCcEEEEEECCCCHhHHH-HHHHH---HHHHHHhCCceEEEEEECCC--CHHHHHHCCCCcCCEEEEE--eCCE
Confidence 334567899999999999999998 65432 34445555568888777754 3568889999999998877 3799
Q ss_pred eeEEEecCCChHHHHHHHHhhh
Q 013325 254 KMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
.+.++.|..+.+++.+.|.+++
T Consensus 85 ~~~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 85 KCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEEEeCCCCHHHHHHHHHHHh
Confidence 9999999999998888877664
No 41
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=98.49 E-value=1e-06 Score=71.49 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=75.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|.+.+ .+.+|+++|+++++||..|+. +...+ ..+.+....++.+..++.+.. ..++..|++..+|++++
T Consensus 10 ~~f~~~~---~~~~~~~~v~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 80 (108)
T 2trx_A 10 DSFDTDV---LKADGAILVDFWAEWCGPCKM-IAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL 80 (108)
T ss_dssp TTHHHHT---TTCSSEEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTEEEEEEETTTC--TTHHHHTTCCSSSEEEE
T ss_pred hhHHHHH---HhcCCeEEEEEECCCCHhHHH-HHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCcccCEEEE
Confidence 4455443 467899999999999999998 64432 345555556788888887653 35788999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+ .+|+.+.++.|..++++|...|.+.+
T Consensus 81 ~--~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 81 F--KNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp E--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred E--eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 9 37999999999999998888877654
No 42
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.46 E-value=1.9e-06 Score=68.76 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=74.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
..+|++++ ..+|+++|+++++||..|+. +... | ..+.+.+.. +.+..++.+. ...++..|++..+|+++
T Consensus 6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~-~~~~-~--~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~~Pt~~ 74 (104)
T 2e0q_A 6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLI-LAPI-I--EELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMSLPTVI 74 (104)
T ss_dssp TTTHHHHH----HHSSEEEEEEECTTCHHHHH-HHHH-H--HHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSCEEE
T ss_pred HHHHHHHH----hcCCcEEEEEECCCChhHHH-HhHH-H--HHHHHHcCC-ceEEEEECCC--CHHHHHhCCccccCEEE
Confidence 34677766 46899999999999999998 6432 2 223333333 7777777654 45688999999999999
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++ .+|+.+.++.|..+.+.+...|...+.
T Consensus 75 ~~--~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 75 FF--KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp EE--ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred EE--ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 99 379999999999999988888877664
No 43
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.45 E-value=1.4e-06 Score=75.26 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=80.9
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
-..+|++++ ..+|++||+++++||..|+. +...+ ..+.+.+..++.++.++.+. ...++..|++..+|++
T Consensus 44 ~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~-~~p~l---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~ 113 (148)
T 3p2a_A 44 TAETLDKLL----QDDLPMVIDFWAPWCGPCRS-FAPIF---AETAAERAGKVRFVKVNTEA--EPALSTRFRIRSIPTI 113 (148)
T ss_dssp CTTTHHHHT----TCSSCEEEEEECSSCHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred CHHHHHHHH----hcCCcEEEEEECCCCHHHHH-HHHHH---HHHHHHcCCceEEEEEECcC--CHHHHHHCCCCccCEE
Confidence 345666665 78999999999999999999 64332 34444455678888777754 4578899999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+|+. +|+.+.++.|..+.+.|...|.+.+...
T Consensus 114 ~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 145 (148)
T 3p2a_A 114 MLYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRD 145 (148)
T ss_dssp EEEE--TTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred EEEE--CCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence 9985 7999999999999999999999888743
No 44
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=98.45 E-value=6.8e-07 Score=75.47 Aligned_cols=91 Identities=8% Similarity=0.184 Sum_probs=73.7
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.+..++|++||+++++||..|+. +...+ +.+.+.++.++.+..++.+. ...++..|++..+|+++++. .|+.
T Consensus 37 ~~~~~~k~vlv~F~a~wC~~C~~-~~p~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~--~G~~ 108 (128)
T 3ul3_B 37 GVNMKNTVIVLYFFAKWCQACTM-QSTEM---DKLQKYYGKRIYLLKVDLDK--NESLARKFSVKSLPTIILLK--NKTM 108 (128)
T ss_dssp BTTSCCSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHGGGEEEEEEEGGG--CHHHHHHTTCCSSSEEEEEE--TTEE
T ss_pred HHHccCCEEEEEEECCCCHHHHH-HhHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCCcCEEEEEE--CCEE
Confidence 34557899999999999999999 75443 45555566789999888754 45789999999999999994 6999
Q ss_pred eEEEecCCChHHHHHHHHh
Q 013325 255 MRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~ 273 (445)
+.++.|..+.+++.+.|.+
T Consensus 109 ~~~~~G~~~~~~l~~~l~~ 127 (128)
T 3ul3_B 109 LARKDHFVSSNDLIALIKK 127 (128)
T ss_dssp EEEESSCCCHHHHHHHHTT
T ss_pred EEEecCCCCHHHHHHHHHh
Confidence 9999999999988877654
No 45
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.43 E-value=8.6e-07 Score=72.48 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=72.2
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeE
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 256 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~ 256 (445)
.+.+|+++|+++++||..|+. +...+ ..+.+.+..++.++.++.+. ...++..|++..+|+++++. +|+.+.
T Consensus 20 ~~~~~~~vv~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~~ 91 (112)
T 1t00_A 20 LKNDKPVLVDFWAAWCGPCRQ-IAPSL---EAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMSIPTLNVYQ--GGEVAK 91 (112)
T ss_dssp TTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEE
T ss_pred hhCCCeEEEEEECCCCHhHHh-cCHHH---HHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCcccEEEEEe--CCEEEE
Confidence 356899999999999999998 64332 23444454568888888764 35688999999999988873 799999
Q ss_pred EEecCCChHHHHHHHHhhhh
Q 013325 257 SWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 257 ~~~G~~~~~~~l~~L~~~~~ 276 (445)
++.|..+.+.|...|.+.+.
T Consensus 92 ~~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 92 TIVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp EEESCCCHHHHHHHTHHHHC
T ss_pred EEeCCCCHHHHHHHHHHHhh
Confidence 99999999988888877653
No 46
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.43 E-value=9.8e-07 Score=74.25 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=79.4
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
..+|++.+ .+.+|++||+++++||..|+. +...+ +.+.+.+..++.+..++.+. ...++..|++..+|+++
T Consensus 24 ~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~-~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~ 94 (130)
T 2dml_A 24 PSNFNREV---IQSDGLWLVEFYAPWCGHCQR-LTPEW---KKAATALKDVVKVGAVNADK--HQSLGGQYGVQGFPTIK 94 (130)
T ss_dssp TTTHHHHT---TTCSSCEEEEEECTTCSTTGG-GHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHHTCCSSSEEE
T ss_pred HHHHHHHH---hcCCCeEEEEEECCCCHHHHh-hCHHH---HHHHHHhcCceEEEEEeCCC--CHHHHHHcCCCccCEEE
Confidence 34565544 356899999999999999999 75443 45555556668888777754 45688999999999999
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
++++ .|.++..+.|..+.++|++.|.+.+...
T Consensus 95 ~~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~ 126 (130)
T 2dml_A 95 IFGA-NKNKPEDYQGGRTGEAIVDAALSALRSG 126 (130)
T ss_dssp EESS-CTTSCEECCSCCSHHHHHHHHHHHHHHS
T ss_pred EEeC-CCCeEEEeecCCCHHHHHHHHHHHHhcC
Confidence 9985 4555778899999999999998887654
No 47
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.42 E-value=7e-07 Score=73.97 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=72.8
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.+.+.+|++||++++++|..|+. +...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++++. +|+.
T Consensus 25 ~~~~~~~~~lv~f~~~~C~~C~~-~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~--~g~~ 96 (121)
T 2i1u_A 25 DVLSSNKPVLVDFWATWCGPCKM-VAPVL---EEIATERATDLTVAKLDVDT--NPETARNFQVVSIPTLILFK--DGQP 96 (121)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEE
T ss_pred HHHhCCCcEEEEEECCCCHHHHH-HHHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCcCCEEEEEE--CCEE
Confidence 33457899999999999999999 75443 44555555578888888764 45688999999999998885 7999
Q ss_pred eEEEecCCChHHHHHHHHhhh
Q 013325 255 MRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+.++.|..+.+.|...|...+
T Consensus 97 ~~~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 97 VKRIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp EEEEESCCCHHHHHHHTCSCC
T ss_pred EEEecCCCCHHHHHHHHHHHH
Confidence 999999999888877666544
No 48
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=98.41 E-value=1.9e-06 Score=70.67 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=68.0
Q ss_pred HHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCC
Q 013325 173 KDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 250 (445)
Q Consensus 173 ~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~ 250 (445)
+..+.+++|++||+++++||..|+. +.. .+.++.++ ++.+..++.+ +...++..|++..+|++++++
T Consensus 17 f~~~~~~~k~vlv~f~a~wC~~C~~-~~p------~l~~l~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~-- 85 (109)
T 3f3q_A 17 FDSAIAQDKLVVVDFYATWCGPCKM-IAP------MIEKFSEQYPQADFYKLDVD--ELGDVAQKNEVSAMPTLLLFK-- 85 (109)
T ss_dssp HHHHTTSSSCEEEEEECTTCHHHHH-HHH------HHHHHHHHCTTSEEEEEETT--TCHHHHHHTTCCSSSEEEEEE--
T ss_pred HHHHHhcCCEEEEEEECCcCHhHHH-HHH------HHHHHHHHCCCCEEEEEECC--CCHHHHHHcCCCccCEEEEEE--
Confidence 3445567999999999999999999 643 33444332 4667766665 345688999999999999997
Q ss_pred CCceeEEEecCCChHHHHHHHHhh
Q 013325 251 TGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 251 tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
.|+.+.++.|. +++.|.+.|.+.
T Consensus 86 ~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 86 NGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred CCEEEEEEeCC-CHHHHHHHHHhh
Confidence 69999999998 677777666543
No 49
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=98.41 E-value=1.7e-06 Score=74.00 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=72.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEE
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 258 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~ 258 (445)
.+|++||+++++||..|+. +...+ ..+.+.+..++.++.++.+. ...++..|++..+|+++|+++ .|+++ ..
T Consensus 50 ~~k~vlv~f~a~wC~~C~~-~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~-~g~~~-~~ 121 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKM-VAPIL---EELSKEYAGKIYIYKVNVDK--EPELARDFGIQSIPTIWFVPM-KGEPQ-VN 121 (141)
T ss_dssp CSSCEEEEEECTTCTTHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEECS-SSCCE-EE
T ss_pred CCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHHcCCCCcCEEEEEeC-CCCEE-EE
Confidence 5799999999999999999 75433 45555556678888877754 457899999999999999985 57766 78
Q ss_pred ecCCChHHHHHHHHhhhh
Q 013325 259 CGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 259 ~G~~~~~~~l~~L~~~~~ 276 (445)
.|..+.++|...|...+.
T Consensus 122 ~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 122 MGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp ESCCCHHHHHHHHHHTTC
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 899999999888877764
No 50
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.41 E-value=3.4e-06 Score=67.85 Aligned_cols=96 Identities=15% Similarity=0.268 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
.|++++.. ..+|+++|+++++||..|+. +...+ ..+.+..+.++.++.++.+. ...++..|++..+|+++++
T Consensus 10 ~~~~~l~~--~~~~~~vv~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~ 81 (106)
T 1xwb_A 10 DLDGQLTK--ASGKLVVLDFFATWCGPCKM-ISPKL---VELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFL 81 (106)
T ss_dssp HHHHHHHH--HTTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHh--cCCCEEEEEEECCcCHHHHH-hhHHH---HHHHHHhCCCeEEEEEeccc--hHHHHHHcCCCcccEEEEE
Confidence 45555542 47899999999999999998 65432 23444454678888888764 4568899999999998877
Q ss_pred eCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 248 DPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
. +|+.+.++.| .+++.+.+.|.+.
T Consensus 82 ~--~G~~~~~~~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 82 K--NGVKVEEFAG-ANAKRLEDVIKAN 105 (106)
T ss_dssp E--TTEEEEEEES-CCHHHHHHHHHHT
T ss_pred c--CCcEEEEEcC-CCHHHHHHHHHHh
Confidence 4 6999999999 6888777766554
No 51
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.41 E-value=1.2e-06 Score=75.22 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
+-++..+.....+|++||+++++||..|+. +...+ +.+.+.+..++.|..++.+. ...++..|++..+|+++|+
T Consensus 12 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~-~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~ 85 (140)
T 3hz4_A 12 EDMTWSQQVEDSKKPVVVMFYSPACPYCKA-MEPYF---EEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQGTPTFKFF 85 (140)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCEESEEEEE
T ss_pred chHhHHHHHHhCCCcEEEEEECCCChhHHH-HHHHH---HHHHHHhCCceEEEEEECCc--CHhHHHHCCCCcCCEEEEE
Confidence 334444455667999999999999999999 75433 55666666678888878754 4578899999999999988
Q ss_pred eCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 248 DPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
. +|+.+.++.|..+.+.|...|...+..
T Consensus 86 ~--~G~~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 86 C--HGRPVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp E--TTEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred e--CCcEEEEEcCCCCHHHHHHHHHHHhcc
Confidence 4 699999999999999999999888864
No 52
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.41 E-value=8.2e-07 Score=75.33 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=76.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++.+ .+.+|++||+++++||..|+. +...+ ..+.+.+..++.++.++.+.. ..++..|++..+|++++
T Consensus 30 ~~f~~~~---~~~~k~vlv~F~a~wC~~C~~-~~p~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~ 100 (128)
T 2o8v_B 30 DSFDTDV---LKADGAILVDFWAEWCGPAKM-IAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL 100 (128)
T ss_dssp TTHHHHT---TTCSSEEEEEEECSSCHHHHH-THHHH---HHHHHHTTTTEEEEEEETTTC--CTTSGGGTCCSSSEEEE
T ss_pred hhHHHHH---HhcCCEEEEEEECCCCHHHHH-HhHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCccCEEEE
Confidence 4555443 467899999999999999998 64432 345555555788888887653 35788999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+ .+|+.+.++.|..+.++|...|.+.+
T Consensus 101 ~--~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 101 F--KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp E--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred E--eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 9 37999999999999998888887665
No 53
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.41 E-value=1.1e-06 Score=70.74 Aligned_cols=97 Identities=16% Similarity=0.292 Sum_probs=74.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++.+ .+.+|+++|+++++||..|+. +...+ ..+.+.+..++.++.++.+. ...++..|++..+|++++
T Consensus 8 ~~~~~~~---~~~~~~~~v~f~~~~C~~C~~-~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 78 (105)
T 1fb6_A 8 SSWKEFV---LESEVPVMVDFWAPWCGPCKL-IAPVI---DELAKEYSGKIAVYKLNTDE--APGIATQYNIRSIPTVLF 78 (105)
T ss_dssp TTHHHHT---TTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred hhHHHHH---hcCCCcEEEEEECCCChHHHH-HHHHH---HHHHHHhcCceEEEEEcCcc--hHHHHHhCCCCcccEEEE
Confidence 3455433 346899999999999999999 75443 44555555678888777754 456889999999999887
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+. +|+.+.++.|..+.+.|...|.+.
T Consensus 79 ~~--~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 79 FK--NGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EE--TTEEEEEEEECCCHHHHHHHHHHH
T ss_pred Ee--CCeEEEEEecCCCHHHHHHHHHhh
Confidence 74 799999999999999888877654
No 54
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.40 E-value=1.1e-06 Score=71.28 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=63.6
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
+++|+++|+++++||..|+. +. +.+.++.++ ++.+..++.+.. ..++..|++..+|+++++. +|+.+
T Consensus 16 ~~~~~vlv~f~a~wC~~C~~-~~------p~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~ 84 (105)
T 4euy_A 16 EEQQLVLLFIKTENCGVCDV-ML------RKVNYVLENYNYVEKIEILLQDM--QEIAGRYAVFTGPTVLLFY--NGKEI 84 (105)
T ss_dssp TCSSEEEEEEEESSCHHHHH-HH------HHHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEE--TTEEE
T ss_pred hcCCCEEEEEeCCCCcchHH-HH------HHHHHHHHHcCCceEEEEECCCC--HHHHHhcCCCCCCEEEEEe--CCeEE
Confidence 56899999999999999998 64 344444443 688888887643 4678899999999999996 79999
Q ss_pred EEEecCCChHHHHHHHHhhh
Q 013325 256 RSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 256 ~~~~G~~~~~~~l~~L~~~~ 275 (445)
.++.|..+.++|.+.|.+++
T Consensus 85 ~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 85 LRESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEESSCCHHHHHHHHHTTC
T ss_pred EEEeCCcCHHHHHHHHHHhh
Confidence 99999999999998887664
No 55
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.4e-06 Score=73.47 Aligned_cols=93 Identities=9% Similarity=0.133 Sum_probs=75.5
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 252 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg 252 (445)
.+.+|++||+++++||..|+. +...+ ..+.+.+. .++.+..++.+. ...++..|++..+|+++|+++ |
T Consensus 22 ~~~~~~~lv~f~a~wC~~C~~-~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~--g 93 (133)
T 1x5d_A 22 LDSEDVWMVEFYAPWCGHCKN-LEPEW---AAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRGFPTIKIFQK--G 93 (133)
T ss_dssp TTSSSEEEEEEECTTCHHHHT-HHHHH---HHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCSSSEEEEEET--T
T ss_pred hcCCCeEEEEEECCCCHHHHh-hcHHH---HHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCeeCeEEEEeC--C
Confidence 356899999999999999998 65433 34555555 678888887754 346888999999999999995 8
Q ss_pred ceeEEEecCCChHHHHHHHHhhhhc
Q 013325 253 QKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 253 ~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+.+.++.|..+.+.|...|.+.+..
T Consensus 94 ~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (133)
T 1x5d_A 94 ESPVDYDGGRTRSDIVSRALDLFSD 118 (133)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHHHHhhc
Confidence 8888899999999999999888864
No 56
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.37 E-value=2.1e-06 Score=72.53 Aligned_cols=94 Identities=13% Similarity=0.216 Sum_probs=72.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
.+|++++ ..+|++||+++++||..|+. +... +.++.+ .++.|+.++.+. ...++..|++..+|++
T Consensus 28 ~~f~~~~----~~~k~vvv~F~a~wC~~C~~-~~p~------l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~ 94 (125)
T 1r26_A 28 EQFRNIM----SEDILTVAWFTAVWCGPCKT-IERP------MEKIAYEFPTVKFAKVDADN--NSEIVSKCRVLQLPTF 94 (125)
T ss_dssp HHHHHHH----HSSSCEEEEEECTTCHHHHH-THHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred HHHHHHH----ccCCEEEEEEECCcCHhHHH-HHHH------HHHHHHHCCCCEEEEEECCC--CHHHHHHcCCCcccEE
Confidence 3455555 68999999999999999999 6433 333333 368888888764 4568899999999998
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+|+ ..|+.+.++.| .+++.|.+.|...+.
T Consensus 95 ~i~--~~G~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 95 IIA--RSGKMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp EEE--ETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred EEE--eCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence 877 37999999999 688888888877765
No 57
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=98.37 E-value=4.3e-06 Score=68.58 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=72.5
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
-..+|++++ +.+|++||+++++||..|+. +...+ ..+.+... ++.++.++.+. ...++..|++..+|++
T Consensus 15 ~~~~f~~~~----~~~k~vlv~f~a~~C~~C~~-~~~~l---~~l~~~~~-~v~~~~vd~~~--~~~~~~~~~v~~~Pt~ 83 (112)
T 1syr_A 15 SQAEFDSII----SQNELVIVDFFAEWCGPCKR-IAPFY---EECSKTYT-KMVFIKVDVDE--VSEVTEKENITSMPTF 83 (112)
T ss_dssp SHHHHHHHH----HHCSEEEEEEECTTCHHHHH-HHHHH---HHHHHHCT-TSEEEEEETTT--THHHHHHTTCCSSSEE
T ss_pred CHHHHHHHH----ccCCeEEEEEECCCCHHHHH-HHHHH---HHHHHHcC-CCEEEEEECCC--CHHHHHHcCCCcccEE
Confidence 345666666 37899999999999999999 64332 22222222 58888777764 4468899999999998
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+++. +|+.+.++.|. ++++|...|...+
T Consensus 84 ~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l 111 (112)
T 1syr_A 84 KVYK--NGSSVDTLLGA-NDSALKQLIEKYA 111 (112)
T ss_dssp EEEE--TTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred EEEE--CCcEEEEEeCC-CHHHHHHHHHHhh
Confidence 8774 79999999998 8888887776553
No 58
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.36 E-value=2.6e-06 Score=70.95 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=75.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
..|+..+..+..++.+|++||+++++||..|+. +...+ ..+.+.+ .++.|+.++.+.. ..++..|++..+|++
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~-~~~~l---~~l~~~~-~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~ 80 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQR-LGQIL---PSIAEAN-KDVTFIKVDVDKN--GNAADAYGVSSIPAL 80 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHC-TTSEEEEEETTTC--HHHHHHTTCCSSSEE
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHC-CCeEEEEEECCCC--HHHHHhcCCCCCCEE
Confidence 456777777677778999999999999999998 65433 3344433 5788888887643 568899999999999
Q ss_pred EEEeCC--CCceeEEEecCCChHHHHHHHHhh
Q 013325 245 LVVDPI--TGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 245 ~ii~p~--tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
++++.. .|+++.++.|..+. ++...+..+
T Consensus 81 ~~~~~~~~~G~~~~~~~G~~~~-~l~~~~~~~ 111 (118)
T 2f51_A 81 FFVKKEGNEIKTLDQFVGADVS-RIKADIEKF 111 (118)
T ss_dssp EEEEEETTEEEEEEEEESCCHH-HHHHHHHHH
T ss_pred EEEeCCCCcceEEEeecCCCHH-HHHHHHHHh
Confidence 999741 27788999997644 455555444
No 59
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.36 E-value=3.1e-06 Score=68.06 Aligned_cols=95 Identities=27% Similarity=0.369 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
.|++++..+ .+|+++|+++++||..|+. +...+ ..+.+... ++.+..++.+. ...++..|++..+|+++++
T Consensus 10 ~~~~~l~~~--~~~~~~v~f~~~~C~~C~~-~~~~~---~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 80 (105)
T 3m9j_A 10 AFQEALDAA--GDKLVVVDFSATWCGPCKM-IKPFF---HSLSEKYS-NVIFLEVDVDD--CQDVASESEVKSMPTFQFF 80 (105)
T ss_dssp HHHHHHHHT--TTSCEEEEEECTTCHHHHH-HHHHH---HHHHHHST-TSEEEEEETTT--CHHHHHHTTCCBSSEEEEE
T ss_pred HHHHHHHhc--CCCeEEEEEECCCChhhHH-HHHHH---HHHHHHcc-CeEEEEEEhhh--hHHHHHHcCCCcCcEEEEE
Confidence 455555433 6899999999999999998 64322 22333222 47777777654 4578899999999999999
Q ss_pred eCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 248 DPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
. .|+.+.++.|. +++.+.+.|.+.
T Consensus 81 ~--~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 81 K--KGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp E--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred E--CCeEEEEEeCC-CHHHHHHHHHHh
Confidence 5 68999999998 888888777654
No 60
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.36 E-value=2.1e-06 Score=75.40 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=74.3
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
+.++++||+++++||..|+. +...+ +.+.+.+..++.|..++.+.. ..++..|++..+|+++++. +|+.+.+
T Consensus 62 ~~~~~vlv~F~a~wC~~C~~-~~p~l---~~la~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~G~~~~~ 133 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPCRQ-MAPQF---QAAAATLAGQVRLAKIDTQAH--PAVAGRHRIQGIPAFILFH--KGRELAR 133 (155)
T ss_dssp TCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTCEEEEEETTTS--THHHHHTTCCSSSEEEEEE--TTEEEEE
T ss_pred hCCCcEEEEEECCCCHHHHH-HHHHH---HHHHHHccCCEEEEEEeCCcc--HHHHHHcCCCcCCEEEEEe--CCeEEEE
Confidence 77899999999999999999 75433 345555555788888887643 4688999999999999984 7999999
Q ss_pred EecCCChHHHHHHHHhhhh
Q 013325 258 WCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 258 ~~G~~~~~~~l~~L~~~~~ 276 (445)
+.|..+.++|...|...+.
T Consensus 134 ~~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 134 AAGARPASELVGFVRGKLG 152 (155)
T ss_dssp EESCCCHHHHHHHHHHHHC
T ss_pred ecCCCCHHHHHHHHHHHhc
Confidence 9999999999888887765
No 61
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.35 E-value=3.3e-06 Score=69.92 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
.+.+..+.+.+|+++|+++++||..|+. +.. .+.++.++ ++.+..++.+. ...++..|++..+|+++|+
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~-~~p------~l~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~ 90 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKM-MQP------HLTKLIQAYPDVRFVKCDVDE--SPDIAKECEVTAMPTFVLG 90 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHH-THH------HHHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSBSEEEEE
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHH-HHH------HHHHHHHHCCCCEEEEEECCC--CHHHHHHCCCCcccEEEEE
Confidence 4445556678999999999999999998 643 33344332 37777777754 3468899999999998876
Q ss_pred eCCCCceeEEEecCCChHHHHHHHH
Q 013325 248 DPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
..|+.+.++.|.. ++.|.+.|.
T Consensus 91 --~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 91 --KDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp --ETTEEEEEEESSC-HHHHHHHHH
T ss_pred --eCCeEEEEEeCCC-HHHHHHHHH
Confidence 3799999999987 777766554
No 62
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.9e-06 Score=70.52 Aligned_cols=97 Identities=12% Similarity=0.326 Sum_probs=70.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
.+|++++.. +..+|+++|+++++||..|+. +.. .+.++.+ .++.++.++.+. ...++..|++..+|
T Consensus 9 ~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~-~~~------~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P 78 (112)
T 3d6i_A 9 EQFTYLTTT-AAGDKLIVLYFHTSWAEPCKA-LKQ------VFEAISNEPSNSNVSFLSIDADE--NSEISELFEISAVP 78 (112)
T ss_dssp HHHHHHHTT-TTTTCCEEEEEECCC--CHHH-HHH------HHHHHHHCGGGTTSEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred HHHHHHHhc-ccCCCEEEEEEECCCCHHHHH-HHH------HHHHHHHhcCCCCEEEEEEeccc--CHHHHHHcCCCccc
Confidence 346665554 456899999999999999999 643 3344433 368888888764 34688899999999
Q ss_pred EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 243 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+++++. .|+.+.++.|. .+++|.+.|...+.
T Consensus 79 t~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~ 109 (112)
T 3d6i_A 79 YFIIIH--KGTILKELSGA-DPKEYVSLLEDCKN 109 (112)
T ss_dssp EEEEEE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred EEEEEE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence 998884 79999999997 45567777666553
No 63
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=98.33 E-value=6.6e-07 Score=79.47 Aligned_cols=113 Identities=18% Similarity=0.251 Sum_probs=82.5
Q ss_pred hhcCCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHH--hhccEEEEEeecCChhHHHH
Q 013325 155 SLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQT--ISTNFIFWQVYDDTSEGKKV 232 (445)
Q Consensus 155 ~~f~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~--l~~~FV~~~~~~~s~eg~~~ 232 (445)
..|++.... .+|++++..+..++|++||+++.+||..|+. +.. +|.. +.+. .+-.|+...++.+... +
T Consensus 24 ~~~~~~i~w---~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~-~~p-~l~~--~~~~~~~~~~~~~v~~d~~~~~---~ 93 (164)
T 1sen_A 24 KGFGDHIHW---RTLEDGKKEAAASGLPLMVIIHKSWCGACKA-LKP-KFAE--STEISELSHNFVMVNLEDEEEP---K 93 (164)
T ss_dssp TTSCTTSCB---CCHHHHHHHHHHHTCCEEEEEECTTCHHHHH-HHH-HHHT--CHHHHHHHTTSEEEEEEGGGSC---S
T ss_pred ccccccccc---cCHHHHHHHHHhcCCeEEEEEECCCCHHHHH-HHH-HHHH--HHHHhhcCCeEEEEEecCCchH---H
Confidence 345555432 7899999999999999999999999999999 755 3433 2222 2346766655443221 4
Q ss_pred HHHcCC--CCCcEEEEEeCCCCceeEEEecC----------CChHHHHHHHHhhhhcC
Q 013325 233 CTYYKL--DSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGG 278 (445)
Q Consensus 233 ~~~y~v--~~~P~l~ii~p~tg~~~~~~~G~----------~~~~~~l~~L~~~~~~~ 278 (445)
+..|.+ ..+|+++|+++ +|+++.++.|. .++++|+..|...+...
T Consensus 94 ~~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 94 DEDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp CGGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 556777 56999999985 68888777884 78899999999988754
No 64
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.33 E-value=4.2e-06 Score=67.87 Aligned_cols=97 Identities=9% Similarity=0.134 Sum_probs=70.4
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++++.. ..+|+++|+++++||..|+. +...+ ..+.+-. .++.+..++.+. ...++..|++..+|++++
T Consensus 10 ~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~-~~~~~---~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 80 (107)
T 1gh2_A 10 PDFQPELSG--AGSRLAVVKFTMRGCGPCLR-IAPAF---SSMSNKY-PQAVFLEVDVHQ--CQGTAATNNISATPTFQF 80 (107)
T ss_dssp GGHHHHHHH--TTTSCEEEEEECSSCHHHHH-HHHHH---HHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCChhhHH-HHHHH---HHHHHHC-CCcEEEEEECcc--CHHHHHhcCCCcccEEEE
Confidence 467776653 57899999999999999999 64322 1222222 368888878764 456889999999999988
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+. .|+.+.++.|. .+++|.+.|.+.+
T Consensus 81 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l 106 (107)
T 1gh2_A 81 FR--NKVRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp EE--TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred EE--CCeEEEEEeCC-CHHHHHHHHHHhc
Confidence 84 68989999995 4455666665543
No 65
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.32 E-value=3.4e-06 Score=71.78 Aligned_cols=101 Identities=11% Similarity=0.224 Sum_probs=76.7
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCChhHHHHHHHcCCCCC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSI 241 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s~eg~~~~~~y~v~~~ 241 (445)
-..+|++++ +.+|++||+++.+||..|+. +...+ ..+.+.+... +.+..++.+. ...++..|++..+
T Consensus 23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~-~~p~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~ 92 (140)
T 2dj1_A 23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQ-FAPEY---EKIASTLKDNDPPIAVAKIDATS--ASMLASKFDVSGY 92 (140)
T ss_dssp CTTTHHHHH----TTCSEEEEEECCTTCHHHHT-THHHH---HHHHHHHHSSSSCCEEEEECTTT--CHHHHHHTTCCSS
T ss_pred ChHhHHHHH----hcCCeEEEEEECCCCHHHHH-hhHHH---HHHHHHHhccCCceEEEEEeCcc--cHHHHHHCCCCcc
Confidence 345666655 46899999999999999998 64432 2344444443 8888777654 4678899999999
Q ss_pred cEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
|+++|+. .|+ +..+.|..+.+.|...|...+...
T Consensus 93 Pt~~~~~--~G~-~~~~~g~~~~~~l~~~l~~~~~~~ 126 (140)
T 2dj1_A 93 PTIKILK--KGQ-AVDYDGSRTQEEIVAKVREVSQPD 126 (140)
T ss_dssp SEEEEEE--TTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred CeEEEEE--CCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence 9999994 588 677889999999999998887643
No 66
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.32 E-value=7.1e-07 Score=70.81 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=57.9
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCC-CCcCCchhhcCCcC-ceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~-~~~~~Tl~e~gL~~-~~v~v 442 (445)
+|+||+++|+.+...|..++||.+|..+|.... +.....++|..+||++. +. .+.++||+++||.+ ++|+|
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~-gi~~~~qrL~~~~p~k~--l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAIT-GIAPGSQRILVGYPPEC--LDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHT-CCCTTTCCCEESSCCCC--CCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHh-CCCccceEEEeCCCCcc--cccCCCCCCHHHcCCCCCCEEEE
Confidence 589999999877655999999999999999864 55667889999999886 42 23689999999985 55554
No 67
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=98.31 E-value=4.5e-06 Score=71.20 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=73.4
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEE
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 258 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~ 258 (445)
.+|++||+++++||..|+. +...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++++++ .|+.+ .+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~-~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-~G~~~-~~ 108 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKM-VAPIL---DELAKEYDGQIVIYKVDTEK--EQELAGAFGIRSIPSILFIPM-EGKPE-MA 108 (136)
T ss_dssp CSSCEEEEEECTTSHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSCEEEEECS-SSCCE-EE
T ss_pred CCCEEEEEEECCcCHHHHH-HHHHH---HHHHHHhcCCEEEEEEeCCC--CHHHHHHcCCCCCCEEEEECC-CCcEE-EE
Confidence 5799999999999999999 65432 34555555678888888764 346889999999999999985 68776 67
Q ss_pred ecCCChHHHHHHHHhhhhcC
Q 013325 259 CGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 259 ~G~~~~~~~l~~L~~~~~~~ 278 (445)
.|..+.+.|...|.+.+...
T Consensus 109 ~G~~~~~~l~~~l~~~~~~~ 128 (136)
T 2l5l_A 109 QGAMPKASFKKAIDEFLLKK 128 (136)
T ss_dssp ESCCCHHHHHHHHHHHHTSC
T ss_pred eCCCCHHHHHHHHHHHhhcc
Confidence 89999999998888887654
No 68
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.31 E-value=3.2e-06 Score=70.60 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=68.8
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
.+.+|+++|+++++||..|+. +...+ ..+.+.+.. ++.++.++.+. ...++..|++..+|+++++. .|+.+
T Consensus 30 l~~~k~vvv~f~a~~C~~C~~-~~~~l---~~l~~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~~--~G~~~ 101 (121)
T 2j23_A 30 TGGDKVVVIDFWATWCGPCKM-IGPVF---EKISDTPAGDKVGFYKVDVDE--QSQIAQEVGIRAMPTFVFFK--NGQKI 101 (121)
T ss_dssp HSSSSCEEEEEECTTCSTHHH-HHHHH---HHHHTSTHHHHSEEEEEETTT--CHHHHHHHTCCSSSEEEEEE--TTEEE
T ss_pred HcCCCEEEEEEECCCCHhHHH-HHHHH---HHHHHHCcCCcEEEEEEECcC--CHHHHHHcCCCcccEEEEEE--CCeEE
Confidence 378899999999999999999 65432 223333332 38888878765 34688899999999998885 79999
Q ss_pred EEEecCCChHHHHHHHHhhh
Q 013325 256 RSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 256 ~~~~G~~~~~~~l~~L~~~~ 275 (445)
.++.|. ++++|...|.+.+
T Consensus 102 ~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 102 DTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp EEEESS-CHHHHHHHHHHHT
T ss_pred eeEcCC-CHHHHHHHHHHhh
Confidence 999998 8888887776654
No 69
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.29 E-value=6.9e-06 Score=66.54 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=74.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCChhHHHHHHHcCC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKL 238 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s~eg~~~~~~y~v 238 (445)
-..+|++++. ++++||+++++||..|+. +. +.+.++.+. ++.+..++.+. ...++..|++
T Consensus 11 ~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~-~~------~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v 76 (111)
T 3uvt_A 11 TENNFDDTIA-----EGITFIKFYAPWCGHCKT-LA------PTWEELSKKEFPGLAGVKIAEVDCTA--ERNICSKYSV 76 (111)
T ss_dssp CTTTHHHHHH-----SSEEEEEEECSSCHHHHH-HH------HHHHHHHTCCCCC-CCEEEEEEETTT--CHHHHHHTTC
T ss_pred ChhhHHHHhc-----CCcEEEEEECCCChhHHH-hh------HHHHHHHHHhhccCCceEEEEEeccc--cHhHHHhcCC
Confidence 4567887775 789999999999999998 53 455666553 57787777754 4568999999
Q ss_pred CCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 239 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 239 ~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
..+|+++++. .|+.+..+.|..+.+.|...|.+
T Consensus 77 ~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 77 RGYPTLLLFR--GGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp CSSSEEEEEE--TTEEEEEECSCCSHHHHHHHHHH
T ss_pred CcccEEEEEe--CCcEEEeccCCcCHHHHHHHHHh
Confidence 9999998884 68889999999999988887754
No 70
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.27 E-value=5.3e-06 Score=68.50 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
.+|++++.. ..+|+++|+++++||..|+. +. +.+.++.++ ++.++.++.+. ...+++.|++..+|+++
T Consensus 22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~-~~------~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 90 (117)
T 2xc2_A 22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKT-IA------PLFKELSEKYDAIFVKVDVDK--LEETARKYNISAMPTFI 90 (117)
T ss_dssp THHHHHHHH--TTTSCEEEEEECTTCHHHHH-HH------HHHHHHHTTSSSEEEEEETTT--SHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCHhHHH-Hh------HHHHHHHHHcCcEEEEEECCc--cHHHHHHcCCCccceEE
Confidence 567776653 37899999999999999998 64 344555444 67777777754 45688999999999988
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
++. +|+.+.++.| .+++++.+.|.+.
T Consensus 91 ~~~--~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 91 AIK--NGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp EEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred EEe--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence 874 6999999999 5788777766654
No 71
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.26 E-value=6.3e-06 Score=70.11 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=73.4
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-------------------------hhH
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-------------------------SEG 229 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-------------------------~eg 229 (445)
.+.-.+|++||++.+++|..|+. +...+ ..+.+-+...+.++.++.+. ...
T Consensus 24 ~~~~~gk~~lv~f~~~~C~~C~~-~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 99 (148)
T 2b5x_A 24 EQLIGEKPTLIHFWSISCHLCKE-AMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSD 99 (148)
T ss_dssp HHHTTTSCEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSS
T ss_pred hhhcCCCEEEEEEEcCCCHHHHH-HhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCc
Confidence 34456899999999999999988 53322 22333344447777777653 223
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
..+++.|++..+|+++||++ +|+++.++.|..+++++...|...+..
T Consensus 100 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 100 HALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp CHHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred hhHHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 46788999999999999996 699999999988999999888887763
No 72
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.25 E-value=3.9e-07 Score=87.38 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=40.6
Q ss_pred CCChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 4 VLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
+|.+.+ +++|.+||+| ||+++.+|++||+++||||+.|++.||+.+..
T Consensus 10 ~l~~~~-~~~i~qF~~i-Tg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 10 KDASPE-QEAIESFTSL-TKCDPKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp ---CHH-HHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred hhccch-HHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 455565 5599999999 99999999999999999999999999987553
No 73
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.24 E-value=6.3e-06 Score=68.21 Aligned_cols=88 Identities=8% Similarity=0.060 Sum_probs=64.2
Q ss_pred HHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCC--hhHHHHHHHcCCCCCcEEEEEeCC
Q 013325 176 ASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPI 250 (445)
Q Consensus 176 Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s--~eg~~~~~~y~v~~~P~l~ii~p~ 250 (445)
+.+.+++++|+++++||..|+. +. +.+.++.+ ..+++..++... .+...++..|++..+|+++++.
T Consensus 25 ~~~~~~~~~v~f~a~wC~~C~~-~~------p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~-- 95 (118)
T 1zma_A 25 ALDKKETATFFIGRKTCPYCRK-FA------GTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT-- 95 (118)
T ss_dssp HHHTTCCEEEEEECTTCHHHHH-HH------HHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE--
T ss_pred HHhCCCeEEEEEECCCCccHHH-HH------HHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEE--
Confidence 3457899999999999999999 64 33444433 345554322211 3345788999999999999885
Q ss_pred CCceeEEEecCCChHHHHHHHH
Q 013325 251 TGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 251 tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
.|+.+.++.|..++++|...|.
T Consensus 96 ~G~~~~~~~G~~~~~~l~~~l~ 117 (118)
T 1zma_A 96 DGQINVRCDSSMSAQEIKDFAG 117 (118)
T ss_dssp TTEEEEECCTTCCHHHHHHHHT
T ss_pred CCEEEEEecCCCCHHHHHHHhh
Confidence 6888889999999888876653
No 74
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.24 E-value=5.9e-06 Score=70.65 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=71.7
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
+.++ ++|+++++||..|+. +...+ ..+.+.+..++.|+.++.+. ...++..|++..+|+++|+. +|+.+.+
T Consensus 49 ~~~~-vvv~f~~~~C~~C~~-~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~G~~~~~ 119 (140)
T 1v98_A 49 GAPL-TLVDFFAPWCGPCRL-VSPIL---EELARDHAGRLKVVKVNVDE--HPGLAARYGVRSVPTLVLFR--RGAPVAT 119 (140)
T ss_dssp CCCE-EEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEEE
T ss_pred cCCC-EEEEEECCCCHHHHH-HHHHH---HHHHHHccCceEEEEEECCC--CHHHHHHCCCCccCEEEEEe--CCcEEEE
Confidence 4455 999999999999999 75433 34555555578888888764 45688999999999999884 7999999
Q ss_pred EecCCChHHHHHHHHhhhh
Q 013325 258 WCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 258 ~~G~~~~~~~l~~L~~~~~ 276 (445)
+.|..+.+.|...|...++
T Consensus 120 ~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 120 WVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp EESCCCHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHc
Confidence 9999999999888887764
No 75
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.24 E-value=1.3e-05 Score=64.04 Aligned_cols=93 Identities=14% Similarity=0.260 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
.|++++.. ..+|+++|+++++||..|+. +.. .+.++.+. ++.++.++.+. ...++..|++..+|+++
T Consensus 9 ~~~~~l~~--~~~~~~~v~f~~~~C~~C~~-~~~------~l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~ 77 (104)
T 2vim_A 9 DLEKLINE--NKGRLIVVDFFAQWCGPCRN-IAP------KVEALAKEIPEVEFAKVDVDQ--NEEAAAKYSVTAMPTFV 77 (104)
T ss_dssp HHHHHHHT--TTTSCEEEEEECTTCHHHHH-HHH------HHHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHh--cCCCeEEEEEECCCCHHHHH-hhH------HHHHHHHHCCCCEEEEEeccC--CHHHHHHcCCccccEEE
Confidence 34454432 37899999999999999998 643 33333332 68888777754 45688999999999988
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
++. +|+.+.++.| .++++|.+.|.+.
T Consensus 78 ~~~--~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 78 FIK--DGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp EEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred EEe--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence 885 6999999999 5888877776654
No 76
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.23 E-value=4.2e-06 Score=69.50 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
++......+.+|++||+++++||..|+. +...+ ..+.+.+..++.+..++.+. ...++..|++..+|++++++.
T Consensus 11 ~~f~~~~~~~~~~~lv~f~a~~C~~C~~-~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~ 84 (122)
T 3aps_A 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQN-FAPEF---ELLARMIKGKVRAGKVDCQA--YPQTCQKAGIKAYPSVKLYQY 84 (122)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEEE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHH-HHHHH---HHHHHHhcCCeEEEEEeCcC--CHHHHHHcCCCccceEEEEeC
Confidence 3444445577899999999999999999 65432 34555566688888888765 346888999999999999984
Q ss_pred CCCceeEEEecC----CChHHHHHHHHhhhhcC
Q 013325 250 ITGQKMRSWCGM----VQPESLLEDLVPFMDGG 278 (445)
Q Consensus 250 ~tg~~~~~~~G~----~~~~~~l~~L~~~~~~~ 278 (445)
.|. +.++.|. .+++.|...|...+...
T Consensus 85 -~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 115 (122)
T 3aps_A 85 -ERA-KKSIWEEQINSRDAKTIAALIYGKLETL 115 (122)
T ss_dssp -EGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred -CCc-cceeeccccCcCCHHHHHHHHHHHHHhh
Confidence 333 5666665 78999999988888744
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.23 E-value=4.3e-06 Score=80.38 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=78.8
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
-..+|++.+ ....+|+++|+++.+||..|+. +...+ +.+.+-...+++|..++++. ...++..|+|.++|++
T Consensus 13 ~~~~f~~~~--~~~~~~~v~v~f~a~wC~~C~~-~~p~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~ 84 (287)
T 3qou_A 13 NESNLQQVL--EQSMTTPVLFYFWSERSQHCLQ-LTPIL---ESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRAIPTV 84 (287)
T ss_dssp CTTTHHHHH--TTTTTSCEEEEEECTTCTTTTT-THHHH---HHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCSSSEE
T ss_pred CHHHHHHHH--HhcCCCeEEEEEECCCChHHHH-HHHHH---HHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCCCCeE
Confidence 445787755 2345899999999999999999 64332 34444455679999888864 3578999999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+++. .|+.+.++.|..+.+.+...|...+
T Consensus 85 ~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 85 YLFQ--NGQPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp EEEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence 9994 6999999999999888887777665
No 78
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.23 E-value=7.2e-06 Score=70.80 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=72.9
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChh----------------------HHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSE----------------------GKKV 232 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~e----------------------g~~~ 232 (445)
.+|++||++..+||..|.. +. +.+.++.+ .++.++.++.++.+ ...+
T Consensus 23 ~gk~vlv~F~a~wC~~C~~-~~------~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRK-EM------PAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNF 95 (151)
T ss_dssp CSSEEEEEEECTTCHHHHH-HH------HHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHH
T ss_pred CCCEEEEEEEcCcCHHHHH-HH------HHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHH
Confidence 6899999999999999988 43 34444433 46888888887543 3456
Q ss_pred HHHcC--CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcCC
Q 013325 233 CTYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 233 ~~~y~--v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
+..|+ +..+|+++||++ .|+++.++.|..+++++.+.|........
T Consensus 96 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~~ 143 (151)
T 3raz_A 96 MKTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKCR 143 (151)
T ss_dssp HHTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred HHHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 77888 889999999996 69999999999999999988888876543
No 79
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=98.22 E-value=1.7e-06 Score=72.78 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=70.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCc--------------chhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHH
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEF--------------SSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV 232 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f--------------~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~ 232 (445)
.+|++.+ .+.+|++||+++++||. .|+. +... | +.+.+-+..++.+..++.+.. ..+
T Consensus 11 ~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~-~~p~-~--~~l~~~~~~~~~~~~vd~d~~--~~l 81 (123)
T 1oaz_A 11 DSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKM-IAPI-L--DEIADEYQGKLTVAKLNIDQN--PGT 81 (123)
T ss_dssp TTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCT-THHH-H--TTC-------CEEEEEETTSC--TTT
T ss_pred hhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHH-HHHH-H--HHHHHHhcCCeEEEEEECCCC--HHH
Confidence 4555443 46799999999999999 7776 5432 2 223333444688888887653 457
Q ss_pred HHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 233 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 233 ~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+..|++..+|+++++ .+|+.+.++.|..++++|.+.|.+.+
T Consensus 82 ~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 82 APKYGIRGIPTLLLF--KNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp GGGGTCCBSSEEEEE--ESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred HHHcCCCccCEEEEE--ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 889999999999999 37999999999999998888776543
No 80
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.22 E-value=5.4e-06 Score=71.42 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=71.8
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChh--------------------HHHHHHHcC
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE--------------------GKKVCTYYK 237 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~e--------------------g~~~~~~y~ 237 (445)
.+|++||++.++||..|.. +...+ ..+.+-+. .++.++.++.+... ...++..|+
T Consensus 25 ~gk~vlv~F~~~~C~~C~~-~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKK-EFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD 100 (151)
T ss_dssp TTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcC
Confidence 5799999999999999987 53322 12223232 35777777776532 235788899
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+..+|+++||++ .|+++.++.|..+.+++...|...+...
T Consensus 101 v~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~~ 140 (151)
T 2f9s_A 101 VSPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPGE 140 (151)
T ss_dssp CCSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred CCCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999996 6999999999999999999888887644
No 81
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.22 E-value=3.5e-06 Score=78.36 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=80.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
..+|++.+ .+.+|++||+++++||..|+. +...+ ..+.+.+..++.+..++.+.. ..++..|++..+|+++
T Consensus 19 ~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~-~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~ 89 (222)
T 3dxb_A 19 DDSFDTDV---LKADGAILVDFWAEWCGPCKM-IAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLL 89 (222)
T ss_dssp TTTHHHHH---TTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTCEEEEEETTTC--TTTGGGGTCCSBSEEE
T ss_pred HHHHHHHH---HhcCCEEEEEEECCcCHHHHH-HHHHH---HHHHHHhcCCcEEEEEECCCC--HHHHHHcCCCcCCEEE
Confidence 34565544 467999999999999999999 65433 445555566688887777653 3568899999999999
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
|+. .|+.+.++.|..+.+.|...|...+...
T Consensus 90 ~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 90 LFK--NGEVAATKVGALSKGQLKEFLDANLAGS 120 (222)
T ss_dssp EEE--TTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred EEE--CCeEEEEeccccChHHHHHHHHhhcccc
Confidence 996 6999999999999999999999888654
No 82
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.21 E-value=8e-06 Score=75.08 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=79.3
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|+.++ ..+|++||+++++||..|+. +... | ..+.+.+..++.+..++.+. ...++..|++..+|+++|
T Consensus 105 ~~f~~~~----~~~~~vlv~F~a~wC~~C~~-~~p~-~--~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~ 174 (210)
T 3apq_A 105 REFDAAV----NSGELWFVNFYSPGCSHCHD-LAPT-W--REFAKEVDGLLRIGAVNCGD--DRMLCRMKGVNSYPSLFI 174 (210)
T ss_dssp HHHHHHH----HHSCCEEEEEECTTCHHHHH-HHHH-H--HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHH----ccCCcEEEEEeCCCChhHHH-HHHH-H--HHHHHHhcCceEEEEEECCc--cHHHHHHcCCCcCCeEEE
Confidence 3455544 67899999999999999999 6543 3 44555556678888888754 456889999999999999
Q ss_pred EeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 247 VDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 247 i~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+ ..|+.+.++.|..+.+.|...|...+...
T Consensus 175 ~--~~G~~~~~~~G~~~~~~l~~~i~~~l~~~ 204 (210)
T 3apq_A 175 F--RSGMAAVKYNGDRSKESLVAFAMQHVRST 204 (210)
T ss_dssp E--CTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred E--ECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence 9 46888889999999999999998887644
No 83
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.20 E-value=9.8e-06 Score=70.64 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
..|++++..+ .+|++||+++.+||..|+. +.. .+.++.+ .++.|..++.+. ...++..|++..+|++
T Consensus 21 ~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~-~~p------~l~~l~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~ 89 (153)
T 2wz9_A 21 GQFEELLRLK--AKSLLVVHFWAPWAPQCAQ-MNE------VMAELAKELPQVSFVKLEAEG--VPEVSEKYEISSVPTF 89 (153)
T ss_dssp HHHHHHHHHT--TTSCEEEEEECTTCHHHHH-HHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSSSEE
T ss_pred HHHHHHHHhc--CCCeEEEEEECCCCHhHHH-HHH------HHHHHHHHcCCeEEEEEECCC--CHHHHHHcCCCCCCEE
Confidence 4455555432 4899999999999999998 643 3344433 368888888754 4568899999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+|++ .|+.+.++.|. +++++...|.+.+..
T Consensus 90 ~~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 90 LFFK--NSQKIDRLDGA-HAPELTKKVQRHASS 119 (153)
T ss_dssp EEEE--TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred EEEE--CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 9999 69999899995 777888888877764
No 84
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.18 E-value=8.5e-06 Score=66.74 Aligned_cols=88 Identities=8% Similarity=0.130 Sum_probs=67.8
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
.++|+++|+++++||..|+. +. +.+.++... ++.+..++.+ +...++..|++..+|+++++ .+|+.+
T Consensus 17 ~~~~~~vv~f~a~wC~~C~~-~~------~~l~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~--~~G~~v 85 (110)
T 2l6c_A 17 EGLSDAIVFFHKNLCPHCKN-ME------KVLDKFGARAPQVAISSVDSE--ARPELMKELGFERVPTLVFI--RDGKVA 85 (110)
T ss_dssp TTCSEEEEEEECSSCSTHHH-HH------HHHHHHHTTCTTSCEEEEEGG--GCHHHHHHTTCCSSCEEEEE--ESSSEE
T ss_pred HcCCCEEEEEECCCCHhHHH-HH------HHHHHHHHHCCCcEEEEEcCc--CCHHHHHHcCCcccCEEEEE--ECCEEE
Confidence 46799999999999999998 63 334444333 4666666663 45678899999999999999 379999
Q ss_pred EEEecCCChHHHHHHHHhhhh
Q 013325 256 RSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 256 ~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.++.|..++++|...|..+..
T Consensus 86 ~~~~G~~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASIHH 106 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC--
T ss_pred EEEcCCCCHHHHHHHHHHHhh
Confidence 999999999988887777654
No 85
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.18 E-value=5.6e-06 Score=69.25 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=67.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCCh---------------------hHHHHHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTS---------------------EGKKVCTY 235 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~---------------------eg~~~~~~ 235 (445)
.+|++||++.+++|..|.. +. +.+.++.++ ++.++.++.+.. ....++..
T Consensus 24 ~~k~~ll~f~~~~C~~C~~-~~------~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQG-EA------PVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN 96 (136)
T ss_dssp TTSCEEEEEECTTCHHHHH-HH------HHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred CCCeEEEEEEcCCChhHHH-HH------HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence 5799999999999999988 53 333443332 677777776541 23457788
Q ss_pred cCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 236 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 236 y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|++..+|+++||++ +|+++ .+.|..+.+++...|...+.
T Consensus 97 ~~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 97 FGVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp TTCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred cCCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 99999999999996 68888 89999999999888877654
No 86
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.18 E-value=1e-05 Score=69.59 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=72.9
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhH---------------------HHHHHHc
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG---------------------KKVCTYY 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg---------------------~~~~~~y 236 (445)
.+|++||++.++||..|.. +...+ ..+.+-+. .++.++.++.+.... ..++..|
T Consensus 29 ~gk~~lv~f~~~~C~~C~~-~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRG-ELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAY 104 (152)
T ss_dssp TTSEEEEEECCSSCCGGGG-THHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHT
T ss_pred CCCEEEEEEECCcCHhHHH-HhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHc
Confidence 4799999999999999987 43221 12222222 358888888776431 2678889
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcCC
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
++..+|+++||++ +|+++.+..|..+.+++.+.|...+..+.
T Consensus 105 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~~ 146 (152)
T 2lja_A 105 LINGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNELLGLEG 146 (152)
T ss_dssp TCCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred CcCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence 9999999999996 59998888898899999999988887654
No 87
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.17 E-value=7.2e-06 Score=71.49 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=70.6
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee--
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-- 255 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~-- 255 (445)
..+|++||+++.+||..|+. +...+ ..+.+-+..++.++.++++. ...++..|++..+|+++++. .|+.+
T Consensus 21 ~~~k~vlv~F~a~WC~~C~~-~~p~l---~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~--~G~~v~~ 92 (149)
T 3gix_A 21 TAEKVLVLRFGRDEDPVCLQ-LDDIL---SKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFF--NGQHMKV 92 (149)
T ss_dssp CCSSEEEEEEECTTSHHHHH-HHHHH---HHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCSSSEEEEEE--TTEEEEE
T ss_pred cCCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHccCceEEEEEECCc--CHHHHHHcCCCccCeEEEEE--CCeEEEe
Confidence 57899999999999999998 64322 12233334459999888854 44688999999999999554 58888
Q ss_pred -------EEEec-CCChHHHHHHHHhhhh
Q 013325 256 -------RSWCG-MVQPESLLEDLVPFMD 276 (445)
Q Consensus 256 -------~~~~G-~~~~~~~l~~L~~~~~ 276 (445)
.++.| ..+.++|...|...+.
T Consensus 93 ~~g~~~~~~~~G~~~~~~~l~~~l~~~~~ 121 (149)
T 3gix_A 93 DYGSPDHTKFVGSFKTKQDFIDLIEVIYR 121 (149)
T ss_dssp ECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred ecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence 88899 8899999888888764
No 88
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.16 E-value=6.1e-06 Score=69.26 Aligned_cols=88 Identities=10% Similarity=0.065 Sum_probs=67.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCCh--------------------hHHHHHHHc
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTS--------------------EGKKVCTYY 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~--------------------eg~~~~~~y 236 (445)
.+|++||++.+++|..|+. +. +.+.++.++ ++.++.++.+.. ....+++.|
T Consensus 23 ~~k~~lv~f~~~~C~~C~~-~~------~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 95 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNA-EA------PSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY 95 (136)
T ss_dssp TTSCEEEEEECTTCHHHHH-HH------HHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT
T ss_pred CCCEEEEEEECCcChhHHH-HH------HHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc
Confidence 5799999999999999988 53 334444332 677777777652 134577889
Q ss_pred CCCCCcEEEEEeCCCCceeEEEe---cCCChHHHHHHHHhhh
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFM 275 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~---G~~~~~~~l~~L~~~~ 275 (445)
++..+|+++||++ +|+++ ++. |..+++++.+.|.+.+
T Consensus 96 ~i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 96 NVPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp TCCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred CCCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 9999999999996 68888 888 9999999988887654
No 89
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.16 E-value=1.1e-05 Score=67.36 Aligned_cols=90 Identities=14% Similarity=0.259 Sum_probs=66.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC--------------------------hhHHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT--------------------------SEGKKV 232 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s--------------------------~eg~~~ 232 (445)
.+|++||++.+++|..|.. +...+ ..+.+....++.++.++... .....+
T Consensus 21 ~gk~~lv~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLA-SLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL 96 (138)
T ss_dssp TTSEEEEEECCTTCHHHHH-HHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred CCCEEEEEEEcCcCHHHHH-HHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence 5799999999999999988 43322 22233334467777763211 112357
Q ss_pred HHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 233 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 233 ~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
+..|++..+|+++||++ .|+++.++.|..+++++...|..
T Consensus 97 ~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 97 LETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence 88999999999999996 69999999999999988887765
No 90
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.15 E-value=2.4e-05 Score=67.43 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=81.7
Q ss_pred chHHHHHhhcCCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCCC--cchhhhhhhcccCChhHHHHhh---ccEEEEEe
Q 013325 148 SSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE--FSSHMVLNRDTWANEAVSQTIS---TNFIFWQV 222 (445)
Q Consensus 148 ~~~~~l~~~f~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~--f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~ 222 (445)
+.-++|....+-+ .+-..+|++.+. +.++++||++..+|| .+|+. +. |-+-++.+ ..+.++.+
T Consensus 6 ~l~~rl~~~~g~~--~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~-ia------Pvleela~e~~~~v~~~KV 73 (137)
T 2qsi_A 6 SLARAAARPNAPT--LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAAD-LA------VVLPELINAFPGRLVAAEV 73 (137)
T ss_dssp -----------CE--EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHH-HH------HHHHHHHHTSTTTEEEEEE
T ss_pred HHHHHHHHhcCCc--ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhh-HH------hHHHHHHHHccCCcEEEEE
Confidence 3444555555433 456789998773 445699999999999 99998 53 44444444 46888877
Q ss_pred ecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 223 YDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 223 ~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|+ .+...++..|+|.++|+++|+. +|+.+.++.|..+.+++...|...+.
T Consensus 74 dv--De~~~la~~ygV~siPTlilFk--dG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 74 AA--EAERGLMARFGVAVCPSLAVVQ--PERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp CG--GGHHHHHHHHTCCSSSEEEEEE--CCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EC--CCCHHHHHHcCCccCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 76 5677899999999999999997 79999999999999999988888775
No 91
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.13 E-value=7.6e-06 Score=69.34 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=66.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCCh-----------------------hHHHHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTS-----------------------EGKKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~-----------------------eg~~~~~ 234 (445)
.+|++||++.+++|..|+. +...+ ..+.+-+. .++.++.++.+.. ....++.
T Consensus 33 ~gk~~ll~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKK-ELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMK 108 (145)
T ss_dssp TTSEEEEEEECSSCHHHHH-HHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHH
T ss_pred CCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHH
Confidence 6799999999999999988 53322 12222232 4677887777541 1346788
Q ss_pred HcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHH
Q 013325 235 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 235 ~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
.|++..+|+++||++ .|+++..+.|..+.++|.+.|
T Consensus 109 ~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 109 EYHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp HTTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred hcCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence 999999999999996 699999999999999887665
No 92
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.12 E-value=2.5e-05 Score=64.91 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
-..+|.+.+.. ..+|+++|+++++||..|+. +... +.++.++ ++.+..++.+. +...++..|++..+|
T Consensus 24 ~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~-~~~~------l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~~P 93 (124)
T 1faa_A 24 NKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKA-MAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVP 93 (124)
T ss_dssp CTTTHHHHHHH--TTTSCEEEEEECTTCHHHHH-HHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSS
T ss_pred cchhHHHHHHh--cCCCEEEEEEECCcCHhHHH-HhHH------HHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCeee
Confidence 34577776653 47899999999999999998 6433 3333332 47777777753 345688999999999
Q ss_pred EEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 243 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+++++. .|+.+.++.|.. ++++.+.|.++
T Consensus 94 t~~~~~--~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILK--ENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEE--TTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEe--CCcEEEEEcCCC-HHHHHHHHHHh
Confidence 976663 699998999975 77777776654
No 93
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=98.10 E-value=8e-07 Score=74.62 Aligned_cols=101 Identities=15% Similarity=0.275 Sum_probs=78.5
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCc
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIP 242 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P 242 (445)
-...|++++..++..+|+++|+++++||..|+. +. +.+.++.+. ++.++.++.+. ...++..|++..+|
T Consensus 21 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~-~~------~~l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~P 91 (130)
T 1wmj_A 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRF-IA------PVFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMP 91 (130)
T ss_dssp SSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSS-SH------HHHHHHHHHCTTBCCEECCTTT--SGGGHHHHTCCSSC
T ss_pred CHHHHHHHHHHHhhcCCEEEEEEECCCChhHHH-HH------HHHHHHHHHCCCCEEEEEeccc--hHHHHHHcCCCccc
Confidence 346799999999999999999999999999998 64 334444443 57777666653 34678899999999
Q ss_pred EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 243 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 243 ~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+++|+ .+|+.+.++.| .+++++...|...+..
T Consensus 92 t~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 123 (130)
T 1wmj_A 92 TFLFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA 123 (130)
T ss_dssp CCCBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred eEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence 98777 47888888888 4778888888777653
No 94
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=98.10 E-value=9.2e-06 Score=69.25 Aligned_cols=88 Identities=10% Similarity=0.028 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCC-------hhHHHHHHHcCCCCCcEEEEEeCCCCc
Q 013325 182 WLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDT-------SEGKKVCTYYKLDSIPVVLVVDPITGQ 253 (445)
Q Consensus 182 ~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s-------~eg~~~~~~y~v~~~P~l~ii~p~tg~ 253 (445)
+++|+++.+||..|+. +. +.+.++.++ .+.+..++.+. .+...++..|++..+|+++|+. .|+
T Consensus 33 ~vlv~F~a~wC~~C~~-~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~--~G~ 103 (135)
T 3emx_A 33 DAILAVYSKTCPHCHR-DW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYK--EGR 103 (135)
T ss_dssp SEEEEEEETTCHHHHH-HH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEE--TTE
T ss_pred cEEEEEECCcCHhhhH-hC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEc--CCE
Confidence 9999999999999998 63 555666554 26666667644 4567889999999999998888 699
Q ss_pred eeEEEecCCChHHHHHHHHhhhhcC
Q 013325 254 KMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 254 ~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.+.++.|..+.+.+...+...++..
T Consensus 104 ~v~~~~G~~~~~~~~~~i~~~~~~~ 128 (135)
T 3emx_A 104 IVDKLVGATPWSLKVEKAREIYGGE 128 (135)
T ss_dssp EEEEEESCCCHHHHHHHHHHHC---
T ss_pred EEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 9999999999888888777777643
No 95
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.10 E-value=1.3e-05 Score=65.44 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=69.5
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..+|.+++.. ..+|++||+++++||..|+. +... +.++.+. ++.+..++.+. +...++..|++..+|+
T Consensus 12 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~-~~~~------l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~~Pt 81 (111)
T 2pu9_C 12 KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKA-MAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPT 81 (111)
T ss_dssp TTTHHHHHTT--CTTSCEEEEEECTTCHHHHH-HHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSBSSE
T ss_pred hHHHHHHHHh--cCCCEEEEEEECCcCHhHHH-HCHH------HHHHHHHCCCeEEEEEecCc-chHHHHHHcCCCeeeE
Confidence 3466665532 25899999999999999998 6433 3333332 47788777753 3456889999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+++ . ..|+.+.++.|. .++++.+.|..++
T Consensus 82 ~~~-~-~~G~~~~~~~G~-~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 82 FKI-L-KENSVVGEVTGA-KYDKLLEAIQAAR 110 (111)
T ss_dssp EEE-E-SSSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred EEE-E-eCCcEEEEEcCC-CHHHHHHHHHHhh
Confidence 554 4 478989899997 4777777776654
No 96
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.09 E-value=5.5e-06 Score=67.94 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=72.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhHHHHHHHcCCCCC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSI 241 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg~~~~~~y~v~~~ 241 (445)
-..+|++++ +.+|++||+++++||..|+. +...+ ..+.+.+. .++++..++.+.. ..++..|++..+
T Consensus 13 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~-~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~ 82 (120)
T 1mek_A 13 RKSNFAEAL----AAHKYLLVEFYAPWCGHCKA-LAPEY---AKAAGKLKAEGSEIRLAKVDATEE--SDLAQQYGVRGY 82 (120)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECSSCSTTST-THHHH---HHHHHTTTTTCCCCBCEEEETTTC--CSSHHHHTCCSS
T ss_pred chhhHHHHH----ccCCeEEEEEECCCCHHHHH-hhHHH---HHHHHHHhccCCcEEEEEEcCCCC--HHHHHHCCCCcc
Confidence 345677655 46899999999999999998 64322 12333332 2577777776542 357888999999
Q ss_pred cEEEEEeCCCCcee--EEEecCCChHHHHHHHHhhhh
Q 013325 242 PVVLVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 242 P~l~ii~p~tg~~~--~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|+++++. .|+.+ ..+.|..+.+.|...|.+.+.
T Consensus 83 Pt~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 117 (120)
T 1mek_A 83 PTIKFFR--NGDTASPKEYTAGREADDIVNWLKKRTG 117 (120)
T ss_dssp SEEEEEE--SSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred cEEEEEe--CCCcCCcccccCccCHHHHHHHHHhccC
Confidence 9999994 57766 788898899988887776553
No 97
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.06 E-value=1.3e-05 Score=68.24 Aligned_cols=98 Identities=9% Similarity=0.128 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
..|++++. ...+|++||+++.+||..|+. +. +.+.++.++ +++++.++.+. ...++..|++..+|+++
T Consensus 29 ~~~~~~l~--~~~~k~vvv~F~a~wC~~C~~-~~------p~l~~l~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~ 97 (133)
T 3cxg_A 29 GSLNQVFS--STQNSSIVIKFGAVWCKPCNK-IK------EYFKNQLNYYYVTLVDIDVDI--HPKLNDQHNIKALPTFE 97 (133)
T ss_dssp THHHHHHT--C-CCSEEEEEEECTTCHHHHH-TH------HHHHGGGGTEECEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred hHHHHHHH--hcCCCEEEEEEECCCCHHHHH-HH------HHHHHHHHhcCEEEEEEeccc--hHHHHHhcCCCCCCEEE
Confidence 45555553 234789999999999999998 63 334444333 46777666654 46788999999999999
Q ss_pred EEeCCCCc--eeEEEecCCChHHHHHHHHhhhh
Q 013325 246 VVDPITGQ--KMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 246 ii~p~tg~--~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|+...+|+ .+.++.|. ++++|...|...+.
T Consensus 98 ~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 98 FYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp EEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred EEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 98323465 88889998 88888888877654
No 98
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.05 E-value=1.4e-05 Score=68.94 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=69.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCCh---------------------hHHHHHHHc
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------------------EGKKVCTYY 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~---------------------eg~~~~~~y 236 (445)
.+|++||++.+++|..|+. +. +.+.++.++ ++.++.++.+.. ....+++.|
T Consensus 41 ~gk~~ll~f~~~~C~~C~~-~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (156)
T 1kng_A 41 KGKVSLVNVWASWCVPCHD-EA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEW 113 (156)
T ss_dssp TTSCEEEEEECTTCHHHHH-HH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHT
T ss_pred CCCEEEEEEEcccCHhHHH-HH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhc
Confidence 4799999999999999987 42 455555554 466666665432 123577889
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++..+|+++||++ +|+++.++.|..+.+.+...|...+.
T Consensus 114 ~v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~ 152 (156)
T 1kng_A 114 GVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQME 152 (156)
T ss_dssp TCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred CcCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999996 69999999999999988888877765
No 99
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.05 E-value=1.2e-05 Score=71.69 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=73.7
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-hh--------------------HHHHHHHc
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-SE--------------------GKKVCTYY 236 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-~e--------------------g~~~~~~y 236 (445)
-.+|++||++..+||..|.. . .+.+.++.++++.++.++.+. .+ ...++..|
T Consensus 56 ~~gk~vll~F~a~~C~~C~~-~------~~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (176)
T 3kh7_A 56 LKGKPALVNVWGTWCPSCRV-E------HPELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDL 128 (176)
T ss_dssp GCSSCEEEEEECTTCHHHHH-H------HHHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHH
T ss_pred hCCCEEEEEEECCcCHHHHH-H------HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHc
Confidence 34799999999999999988 4 366777777778888777432 21 23466778
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
++..+|+++||++ +|+++.++.|..+.+.+.+.|...++.
T Consensus 129 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 168 (176)
T 3kh7_A 129 GVYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQ 168 (176)
T ss_dssp TCCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred CCCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 9999999999996 699999999999999999888888763
No 100
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=97.29 E-value=6.6e-07 Score=71.77 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=68.8
Q ss_pred HHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 175 AASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 175 ~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.+.+.+|+++|++++++|..|+. +... | ..+.+.+..++.++.++.+ +...++..|++..+|+++++ .+|+.
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~-~~~~-~--~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~--~~g~~ 85 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRM-IAPI-I--EELAKEYEGKVKVVKVNVD--ENPNTAAQYGIRSIPTLLLF--KNGQV 85 (106)
Confidence 34567899999999999999998 6443 2 3344444456777766654 44568889999999999998 36888
Q ss_pred eEEEecCCChHHHHHHHHhh
Q 013325 255 MRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~~ 274 (445)
+..+.|..+.+++.+.|...
T Consensus 86 ~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 86 VDRLVGAQPKEALKERIDKH 105 (106)
Confidence 88889988888777666543
No 101
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=98.02 E-value=1.3e-05 Score=70.54 Aligned_cols=100 Identities=9% Similarity=0.080 Sum_probs=74.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++++.. +..|+++|.+..+||.+|.. +.. ++ +++.+-.....+|+.+|++. ...++..|++.+.|++++
T Consensus 30 ~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~-m~P-vl--eelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT~~f 101 (160)
T 2av4_A 30 WAVDQAIVN--EDERLVCIRFGHDYDPDCMK-MDE-LL--YKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVSVMF 101 (160)
T ss_dssp HHHHHHHHH--CSSSEEEEEEECTTSHHHHH-HHH-HH--HHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEEEEE
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCChhHHH-HHH-HH--HHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCEEEE
Confidence 356666632 57899999999999999998 632 11 22333333458899888864 446899999999999988
Q ss_pred EeCCCCcee--E-------EEecCCC-hHHHHHHHHhhhh
Q 013325 247 VDPITGQKM--R-------SWCGMVQ-PESLLEDLVPFMD 276 (445)
Q Consensus 247 i~p~tg~~~--~-------~~~G~~~-~~~~l~~L~~~~~ 276 (445)
+- +|+.+ . ++.|..+ .++|++.|..++.
T Consensus 102 Fk--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r 139 (160)
T 2av4_A 102 FY--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR 139 (160)
T ss_dssp EE--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred EE--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence 86 58776 4 7889876 8899988888775
No 102
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.01 E-value=1.7e-05 Score=67.50 Aligned_cols=90 Identities=18% Similarity=0.309 Sum_probs=66.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh-hc-cEEEEEeecCChh-----------------------HHHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI-ST-NFIFWQVYDDTSE-----------------------GKKVC 233 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l-~~-~FV~~~~~~~s~e-----------------------g~~~~ 233 (445)
.+|++||++.++||..|.. +...+ ..+.+-+ .. ++.++.++.+... ...++
T Consensus 32 ~gk~vll~F~~~~C~~C~~-~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 107 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPE-ANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETA 107 (148)
T ss_dssp TTSEEEEEEECGGGCCCHH-HHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHH
T ss_pred CCcEEEEEEECCCCHHHHH-HhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHH
Confidence 5799999999999999998 53322 1222223 32 4888888887654 45788
Q ss_pred HHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 234 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 234 ~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
..|++..+|+++||++ .|+++.... +.+++...|...+.
T Consensus 108 ~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 108 KQYAILTLPTNILLSP-TGKILARDI---QGEALTGKLKELLK 146 (148)
T ss_dssp HHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHC-
T ss_pred HhcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHHHHHc
Confidence 9999999999999996 688776644 77888877777654
No 103
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.01 E-value=9.8e-06 Score=71.15 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=70.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC---------------------hhHHHHHHHcC
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT---------------------SEGKKVCTYYK 237 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s---------------------~eg~~~~~~y~ 237 (445)
.+|++||++.++||..|.. +. +.+.++.++++.++.++.+. .....++..|+
T Consensus 50 ~gk~vll~F~a~~C~~C~~-~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 122 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRA-EH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 122 (168)
T ss_dssp CSSCEEEEEECTTCHHHHH-HH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT
T ss_pred CCCEEEEEEECCCCHHHHH-HH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC
Confidence 5799999999999999988 53 55666666677676666432 12235777899
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+..+|+++||++ +|+++.++.|..+++.+...|...++
T Consensus 123 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~ 160 (168)
T 2b1k_A 123 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWE 160 (168)
T ss_dssp CCSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred ccccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999995 69999999999999988887777765
No 104
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.01 E-value=2.1e-05 Score=67.89 Aligned_cols=91 Identities=7% Similarity=0.112 Sum_probs=68.8
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeE--
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR-- 256 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~-- 256 (445)
.+|++||+++.+||..|+. +...+ ..+.+-+..++.++.++++.. ..++..|++..+|+++++. .|+.+.
T Consensus 22 ~~k~vlv~F~a~wC~~C~~-~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~i~~~Pt~~~~~--~G~~v~~~ 93 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMK-MDEVL---YSIAEKVKNFAVIYLVDITEV--PDFNKMYELYDPCTVMFFF--RNKHIMID 93 (142)
T ss_dssp SSSEEEEEEECTTSHHHHH-HHHHH---HHHHHHHTTTEEEEEEETTTC--CTTTTSSCSCSSCEEEEEE--TTEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhCCCeEEEEEccccC--HHHHHHcCCCCCCEEEEEE--CCcEEEEe
Confidence 6899999999999999999 65432 234444555799998888653 3478899999999999986 587665
Q ss_pred -------EEecCCC-hHHHHHHHHhhhhc
Q 013325 257 -------SWCGMVQ-PESLLEDLVPFMDG 277 (445)
Q Consensus 257 -------~~~G~~~-~~~~l~~L~~~~~~ 277 (445)
++.|..+ .++|+..|...+..
T Consensus 94 ~g~~~~~~~~g~~~~~~~l~~~i~~~~~~ 122 (142)
T 1qgv_A 94 LGTGNNNKINWAMEDKQEMVDIIETVYRG 122 (142)
T ss_dssp CC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred cCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence 3556654 88898888887763
No 105
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=97.98 E-value=6.3e-05 Score=65.31 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=69.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChh--HHHHHHH-----------------c--
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE--GKKVCTY-----------------Y-- 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~e--g~~~~~~-----------------y-- 236 (445)
.+|++||++.++||..|.. +...+ ..+.+.+. .++.++.++.+... ...+... |
T Consensus 33 ~gk~vlv~f~~~~C~~C~~-~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRS-EIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNG 108 (165)
T ss_dssp TTCEEEEEEECTTSHHHHH-HHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHT
T ss_pred CCCEEEEEEEcCcCHHHHH-HHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhh
Confidence 5799999999999999998 54322 22333333 35888888876532 2333322 2
Q ss_pred ----CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 237 ----KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 237 ----~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
++..+|+++||++ +|+++..+.|..+++++.+.|...+...
T Consensus 109 ~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 109 YIDGGITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAK 153 (165)
T ss_dssp TSTTCSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred hhccCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence 7889999999996 6999999999999999999999998755
No 106
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=97.97 E-value=5.8e-05 Score=64.85 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=68.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCCh--hH-------------------HHHHHHc
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTS--EG-------------------KKVCTYY 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~--eg-------------------~~~~~~y 236 (445)
.+|++||++.+++|..|.. +...+ ..+.+-+.. ++.++.++.+.. +. ..++..|
T Consensus 27 ~gk~vll~f~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCRE-EIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLY 102 (154)
T ss_dssp TTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHh
Confidence 5799999999999999988 54332 223333333 677777777763 22 2377889
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCC--ChHHHHHHHHhhhhcC
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMDGG 278 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~--~~~~~l~~L~~~~~~~ 278 (445)
++..+|+++||++ .|+++.++.|.. +.+++...|.......
T Consensus 103 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~ 145 (154)
T 3kcm_A 103 GTTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELSKA 145 (154)
T ss_dssp TCCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred CCCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence 9999999999995 799999999975 6678888888776654
No 107
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.97 E-value=2.9e-05 Score=66.72 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=71.0
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecC--Ch-------------------hHHHHHHH
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDD--TS-------------------EGKKVCTY 235 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~--s~-------------------eg~~~~~~ 235 (445)
-.+|++||++.+++|..|+. +...+ ..+.+-+. .++.++.++.+ +. ....++..
T Consensus 26 ~~gk~~lv~f~~~~C~~C~~-~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 101 (153)
T 2l5o_A 26 LQGKVTLINFWFPSCPGCVS-EMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQA 101 (153)
T ss_dssp HTTCEEEEEEECTTCTTHHH-HHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHH
T ss_pred hCCCEEEEEEECCCCccHHH-HHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHH
Confidence 36899999999999999988 53321 12222233 35767666532 21 12457788
Q ss_pred cCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 236 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 236 y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
|++..+|+++||++ .|+++..+.|..+.+.+...|...+...
T Consensus 102 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 143 (153)
T 2l5o_A 102 FGTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNS 143 (153)
T ss_dssp HTCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred cCCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 99999999999996 6899999999999999999999988854
No 108
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=97.97 E-value=0.00011 Score=63.47 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=72.1
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecC-------ChhH-------------
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG------------- 229 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~-------s~eg------------- 229 (445)
..+.-.+|++||++..+||..|.. . ..+.+.++.+ .++.++.++.+ +.+.
T Consensus 24 ~l~~~~gk~vlv~F~a~~C~~C~~-e-----~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
T 3lor_A 24 SNEDLRGKVVVVEVFQMLCPGCVN-H-----GVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFP 97 (160)
T ss_dssp CHHHHTTSEEEEEEECTTCHHHHH-T-----HHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSC
T ss_pred CHHHhCCCEEEEEEEcCCCcchhh-h-----hhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCc
Confidence 344456899999999999999976 1 0244444433 34888877752 2211
Q ss_pred ------H------HHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 230 ------K------KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 230 ------~------~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
. .++..|++..+|+++||++ .|+++.++.|..+.+.+.+.|...+..
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 98 VAVDMPREGQRIPSTMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp EEEECCCTTCSSCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred EEECCccccchhhhHHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 1 2788899999999999996 699999999999999999988888764
No 109
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=97.96 E-value=4e-05 Score=64.23 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=69.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh-----hccEEEEEeecCChhHHHHHHHcCCCC
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI-----STNFIFWQVYDDTSEGKKVCTYYKLDS 240 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l-----~~~FV~~~~~~~s~eg~~~~~~y~v~~ 240 (445)
..+|++.+. +.+|++||+++.+||..|+. |.. +| ..+.+.+ ..++.+..++.+. ...++..|++..
T Consensus 22 ~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~-~~p-~~--~~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~ 92 (127)
T 3h79_A 22 DETFDSIVM---DPEKDVFVLYYVPWSRHSVA-AMR-LW--DDLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRVSG 92 (127)
T ss_dssp TTTHHHHHT---CTTCEEEEEEECTTCHHHHH-HHH-HH--HHHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTCCS
T ss_pred hhhHHHHHh---CCCCCEEEEEECCccHHHHH-HhH-HH--HHHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCCcc
Confidence 346666554 45899999999999999998 643 22 1222211 2468888887764 467899999999
Q ss_pred CcEEEEEeCCCCce-eEEEecCCChHHHHHHHHh
Q 013325 241 IPVVLVVDPITGQK-MRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 241 ~P~l~ii~p~tg~~-~~~~~G~~~~~~~l~~L~~ 273 (445)
||++.++.+ .+.. ...+.|..+.+.|.+.|.+
T Consensus 93 ~Pt~~~~~~-g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 93 FPTMRYYTR-IDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp SSEEEEECS-SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred CCEEEEEeC-CCCCCceEecCCccHHHHHHHHHh
Confidence 999999984 2332 2567898899888877654
No 110
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=97.96 E-value=3.5e-05 Score=66.65 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=70.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecC-------ChhH------------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG------------------ 229 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~-------s~eg------------------ 229 (445)
.+|++||++..+||..|.. . .-+.+.++.+ .++.++.++.+ +.+.
T Consensus 27 ~gk~vlv~f~a~wC~~C~~-~-----~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 100 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVM-H-----GIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQ 100 (158)
T ss_dssp TTSEEEEEEECTTCHHHHH-T-----HHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEEC
T ss_pred CCCEEEEEEECCcCcchhh-h-----hhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcC
Confidence 5799999999999999987 3 0244444433 36777777753 2111
Q ss_pred --H----HHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 230 --K----KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 230 --~----~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
. .++..|++..+|+++||++ .|+++.++.|..+.+++...|...+..
T Consensus 101 ~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 101 PGDGAMPRTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE 153 (158)
T ss_dssp CCSSSSCHHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred ccchhhHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 1 5788999999999999996 699999999999999999988888763
No 111
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=97.96 E-value=4.1e-05 Score=66.22 Aligned_cols=111 Identities=9% Similarity=0.017 Sum_probs=84.5
Q ss_pred chHHHHHhhcCCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCC--CcchhhhhhhcccCChhHHHHhhc---c-EEEEE
Q 013325 148 SSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMVLNRDTWANEAVSQTIST---N-FIFWQ 221 (445)
Q Consensus 148 ~~~~~l~~~f~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~--~f~~~~~~~rdv~~~~~V~~~l~~---~-FV~~~ 221 (445)
+.-++|... + +..+-..+|++.+ ...+++||++..++ |.+|+. + .+-+-++.++ . +.|+.
T Consensus 9 pl~~rl~~~-g--~~~~t~~~F~~~v----~~~~~vlVdF~a~~crCgpCk~-i------aPvleela~e~~g~~v~~~K 74 (140)
T 2qgv_A 9 ALWQRMLAR-G--WTPVSESRLDDWL----TQAPDGVVLLSSDPKRTPEVSD-N------PVMIGELLHEFPDYTWQVAI 74 (140)
T ss_dssp HHHHHHHHT-T--CEECCHHHHHHHH----HTCSSEEEEECCCTTTCTTTTH-H------HHHHHHHHTTCTTSCCEEEE
T ss_pred hHHHHHHhc-C--CccCCHHHHHHHH----hCCCCEEEEEeCCcccCCcHHH-H------HhHHHHHHHHcCCCeEEEEE
Confidence 444555544 3 3334556788776 26778999999988 889988 5 3455555543 4 77886
Q ss_pred eecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 222 VYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 222 ~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+|+ .+...++..|+|.++|+++|+. +|+.+.++.|..+.+.+...|..++.
T Consensus 75 Vdv--De~~~lA~~ygV~sIPTlilFk--~G~~v~~~~G~~~k~~l~~~i~~~l~ 125 (140)
T 2qgv_A 75 ADL--EQSEAIGDRFGAFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVE 125 (140)
T ss_dssp CCH--HHHHHHHHHHTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred EEC--CCCHHHHHHcCCccCCEEEEEE--CCEEEEEEecCCCHHHHHHHHHHHhc
Confidence 665 5778899999999999999997 79999999999999999998888874
No 112
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=97.96 E-value=1.4e-05 Score=67.93 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=68.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhH--HH---------------------HHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEG--KK---------------------VCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg--~~---------------------~~~ 234 (445)
.+|++||++.++||..|+. +...+- .+.+-+.. ++.++.++.+.... .. ++.
T Consensus 30 ~gk~vll~f~~~~C~~C~~-~~~~l~---~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQ-ETPKLY---DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKI 105 (148)
T ss_dssp CCSEEEEEEECGGGCTTCS-HHHHHH---HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHH
T ss_pred CCCEEEEEEECCCCccHHH-HHHHHH---HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHH
Confidence 5799999999999999988 532211 12232333 48888888774322 11 778
Q ss_pred HcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 235 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 235 ~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.|++..+|+++|||+ .|+++.++.|..+.+.+++.|.+.+.
T Consensus 106 ~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 106 TYDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK 146 (148)
T ss_dssp HHCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred hcCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence 899999999999996 69999988888888888888876653
No 113
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=97.93 E-value=6.5e-05 Score=66.91 Aligned_cols=93 Identities=12% Similarity=0.192 Sum_probs=66.9
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cE------EEEEeecCC--hh-HHHHHHHc------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NF------IFWQVYDDT--SE-GKKVCTYY------------ 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~F------V~~~~~~~s--~e-g~~~~~~y------------ 236 (445)
.+|++||++..+||..|.. +...+ ..+.+-+.+ ++ .++.++.+. .+ ...++..+
T Consensus 58 ~gk~vlv~F~a~~C~~C~~-~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 133 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRS-ESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPF 133 (183)
T ss_dssp TTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTC
T ss_pred CCCEEEEEEECCcCHhHHH-HHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcc
Confidence 4799999999999999987 43322 223333333 36 888888776 22 33444332
Q ss_pred ---------CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 237 ---------KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 237 ---------~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++..+|+++||++ .|+++.++.|..+++++...|...+.
T Consensus 134 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 134 MTAASLGGVPASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp GGGGGTTTCCTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred hHHHHhccCCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 5678999999996 69999999999999999988888765
No 114
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=97.92 E-value=0.00012 Score=62.70 Aligned_cols=96 Identities=13% Similarity=0.197 Sum_probs=68.6
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhH-H-------------------HHHHHc
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-K-------------------KVCTYY 236 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg-~-------------------~~~~~y 236 (445)
-.+|++||++.+++|..|.. +...+ ..+.+-+. .++.++.++.+.... . .++..|
T Consensus 26 ~~gk~vll~f~~~~C~~C~~-~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 101 (152)
T 3gl3_A 26 KTGSVVYLDFWASWCGPCRQ-SFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLY 101 (152)
T ss_dssp GTTSEEEEEEECTTCTHHHH-HHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHT
T ss_pred hCCCEEEEEEECCcCHHHHH-HHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHc
Confidence 35899999999999999988 54332 22333333 347777777764321 1 567889
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCC--ChHHHHHHHHhhhhcC
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMDGG 278 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~--~~~~~l~~L~~~~~~~ 278 (445)
++..+|+++||++ .|+++.++.|.. +.+++.+.|.+.+...
T Consensus 102 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 102 GVKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGN 144 (152)
T ss_dssp TCCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred CCCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence 9999999999996 699999999965 4467887777776644
No 115
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=3e-05 Score=65.97 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=68.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCC----
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLD---- 239 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~---- 239 (445)
-..+|++++ +...++++||+++.+||..|+. +...+ ..+.+-... ++.+..++.+. ...++..|++.
T Consensus 13 ~~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~-~~p~~---~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~~~ 84 (137)
T 2dj0_A 13 NDKTIDEEL--ERDKRVTWIVEFFANWSNDCQS-FAPIY---ADLSLKYNCTGLNFGKVDVGR--YTDVSTRYKVSTSPL 84 (137)
T ss_dssp CTTHHHHHH--HHSTTSCEEEEECCTTCSTTTT-THHHH---HHHHHHHCSSSCEEEECCTTT--CHHHHHHTTCCCCSS
T ss_pred cHhhHHHHH--hcCCCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhCCCCeEEEEEeCcc--CHHHHHHccCcccCC
Confidence 345778777 4555779999999999999999 65432 234444443 78888777654 45688999998
Q ss_pred --CCcEEEEEeCCCCceeEEEecCCChHH
Q 013325 240 --SIPVVLVVDPITGQKMRSWCGMVQPES 266 (445)
Q Consensus 240 --~~P~l~ii~p~tg~~~~~~~G~~~~~~ 266 (445)
.+|+++++. .|+.+.++.|..+.+.
T Consensus 85 ~~~~Pt~~~~~--~G~~~~~~~G~~~~~~ 111 (137)
T 2dj0_A 85 TKQLPTLILFQ--GGKEAMRRPQIDKKGR 111 (137)
T ss_dssp SSCSSEEEEES--SSSEEEEESCBCSSSC
T ss_pred cCCCCEEEEEE--CCEEEEEecCcCchHH
Confidence 999999994 6888888888766543
No 116
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=97.88 E-value=0.00011 Score=63.17 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=66.1
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChh-----------------------HHHHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-----------------------GKKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~e-----------------------g~~~~~ 234 (445)
.+|++||++.++||..|.. +...+ ..+.+-+. .++.++.++.+... ...++.
T Consensus 28 ~gk~vll~F~a~~C~~C~~-~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRK-ETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLE 103 (152)
T ss_dssp TTSEEEEEEECTTCTTHHH-HHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHH-HHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHH
Confidence 5799999999999999988 53322 12222233 35888888877532 467888
Q ss_pred HcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 235 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 235 ~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.|++..+|+++|||+ +|+++.+. .+++++.+.|...+...
T Consensus 104 ~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~l~~~~ 143 (152)
T 2lrn_A 104 SYCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVEKFVNGA 143 (152)
T ss_dssp HTTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHHHHHTSS
T ss_pred HhCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHHHHHhhc
Confidence 999999999999996 68887764 35567777777766643
No 117
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=97.88 E-value=3.1e-05 Score=67.34 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=64.6
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc----cEEEEEeecC--------------------------Ch
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST----NFIFWQVYDD--------------------------TS 227 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~----~FV~~~~~~~--------------------------s~ 227 (445)
..+|++||++..+||..|.. +. +.+.++.++ ++.++.++.+ ..
T Consensus 36 ~~gk~vlv~F~a~~C~~C~~-~~------~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 108 (164)
T 2h30_A 36 KKDKPTLIKFWASWCPLCLS-EL------GQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTD 108 (164)
T ss_dssp CTTSCEEEEECCTTCHHHHH-HH------HHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEEC
T ss_pred hCCCEEEEEEECCCCHHHHH-HH------HHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEc
Confidence 46799999999999999987 53 333333322 2222222211 11
Q ss_pred hHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 228 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 228 eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+...++..|++..+|+++||++ .|+++.++.|..+.+++...|...+.
T Consensus 109 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 109 NGGTIAQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNA 156 (164)
T ss_dssp TTCHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred CchHHHHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 2346788999999999999996 69999999999999988888877765
No 118
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.87 E-value=8.4e-05 Score=64.54 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=69.5
Q ss_pred cCCeEEEEEeCCCCcc-hhhhhhhcccCChhHHHHhh-----ccEEEEEeecCC----h---------------------
Q 013325 179 QDKWLLVNLQSTKEFS-SHMVLNRDTWANEAVSQTIS-----TNFIFWQVYDDT----S--------------------- 227 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~-~~~~~~rdv~~~~~V~~~l~-----~~FV~~~~~~~s----~--------------------- 227 (445)
.+||+||++..++|.+ |.. ....+ ..+.+-+. .++.++.++.+. +
T Consensus 22 ~gk~vll~f~~~~C~~~C~~-~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~ 97 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPE-ELEKM---IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTR 97 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHH-HHHHH---HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCH
T ss_pred CCCEEEEEEEeCCCCchhHH-HHHHH---HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCH
Confidence 4799999999999998 976 32211 12333333 267777666653 1
Q ss_pred -hHHHHHHHcCCCCCc---------------EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 228 -EGKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 228 -eg~~~~~~y~v~~~P---------------~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
....+++.|++...| +++||++ .|+++.++.|..+++++.+.|...+..+
T Consensus 98 d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 98 EEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 123578889998889 8999996 6999999999999999999998887654
No 119
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=7e-05 Score=62.45 Aligned_cols=97 Identities=7% Similarity=0.082 Sum_probs=71.2
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
..+|++++. +.+||+++++||..|+. +...+ ..+.+.+.. ++.+..++.+. ...++..|++..+|++
T Consensus 14 ~~~f~~~~~------~~vlv~f~a~wC~~C~~-~~p~~---~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~ 81 (126)
T 1x5e_A 14 DENWRELLE------GDWMIEFYAPWCPACQN-LQPEW---ESFAEWGEDLEVNIAKVDVTE--QPGLSGRFIINALPTI 81 (126)
T ss_dssp TTTHHHHTS------SEEEEEEECSSCHHHHH-HHHHH---HHHHHHHGGGTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred HHHHHHHhC------CCEEEEEECCCCHHHHH-HhHHH---HHHHHHhccCCeEEEEEECcC--CHHHHHHcCCcccCEE
Confidence 456665442 23889999999999998 64432 234444443 78888887764 3468899999999999
Q ss_pred EEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 245 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+++. .|+ +.++.|..+.++|...|...+..
T Consensus 82 ~~~~--~G~-~~~~~G~~~~~~l~~~l~~~~~~ 111 (126)
T 1x5e_A 82 YHCK--DGE-FRRYQGPRTKKDFINFISDKEWK 111 (126)
T ss_dssp EEEE--TTE-EEECCSCCCHHHHHHHHHTCGGG
T ss_pred EEEe--CCe-EEEeecCCCHHHHHHHHHHHhhc
Confidence 9993 687 56788999999888888777653
No 120
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.87 E-value=1.9e-05 Score=67.50 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
..|.+++..+ ..+|++||+++.+||..|+. |. +.+.++.++ ++.|+.++++... ..|++..+|++
T Consensus 18 ~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~-~~------p~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt~ 84 (135)
T 2dbc_A 18 NQYVNEVTNA-EKDLWVVIHLYRSSVPMCLV-VN------QHLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPTI 84 (135)
T ss_dssp HHHHHHTTTC-CSSCEEEEEECCTTCHHHHH-HH------HHHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSEE
T ss_pred HHHHHHHHhc-CCCCEEEEEEECCCChHHHH-HH------HHHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCEE
Confidence 3455544433 34589999999999999999 64 344444443 5788888876642 68999999999
Q ss_pred EEEeCCCCceeEEEecCC-------ChHHHHHHHHh
Q 013325 245 LVVDPITGQKMRSWCGMV-------QPESLLEDLVP 273 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~-------~~~~~l~~L~~ 273 (445)
+++. .|+++.++.|.. +.+++...|..
T Consensus 85 ~~~~--~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~ 118 (135)
T 2dbc_A 85 FVYK--NGQIEGKFIGIIECGGINLKLEELEWKLSE 118 (135)
T ss_dssp EEES--SSSCSEEEESTTTTTCTTCCHHHHHHHHHH
T ss_pred EEEE--CCEEEEEEEeEEeeCCCcCCHHHHHHHHHH
Confidence 9986 799999999975 45555444443
No 121
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=97.86 E-value=8.6e-05 Score=72.31 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=78.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+|++++ ++.++++||+++.+||..|+. +...+ ..+.+.+...+.+..++++..+...++..|++..+|++.+
T Consensus 25 ~~f~~~i---~~~~~~vlV~F~A~wC~~C~~-~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~ 97 (298)
T 3ed3_A 25 KSFDKAI---HNTNYTSLVEFYAPWCGHCKK-LSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97 (298)
T ss_dssp HHHHHHH---TSSSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEE
T ss_pred HHHHHHH---HhCCCeEEEEEECCCCHHHHH-HHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEE
Confidence 3556555 356899999999999999998 65432 4455556666778888888777889999999999999999
Q ss_pred EeCCCCc-----------------eeEEEecCCChHHHHHHHHhhhh
Q 013325 247 VDPITGQ-----------------KMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 247 i~p~tg~-----------------~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+.+ |+ ....+.|..+.+.++..|...+.
T Consensus 98 ~~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~ 142 (298)
T 3ed3_A 98 FRP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR 142 (298)
T ss_dssp EEC--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred EEC--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence 985 43 35667898999999888877664
No 122
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=97.85 E-value=7.1e-05 Score=64.37 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=67.9
Q ss_pred CeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeec---CCh----------------------hHHHHHH
Q 013325 181 KWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYD---DTS----------------------EGKKVCT 234 (445)
Q Consensus 181 K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~---~s~----------------------eg~~~~~ 234 (445)
|++||++.+++|..|.. +.. .+.++.++ ++.++.++. ++. ....++.
T Consensus 31 k~vll~f~~~~C~~C~~-~~~------~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKA-EFP------GLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAA 103 (154)
T ss_dssp SSEEEEEECTTCHHHHH-HHH------HHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHT
T ss_pred CeEEEEEEcccChhHHH-HHH------HHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHH
Confidence 89999999999999988 543 33333322 455555555 221 4567888
Q ss_pred HcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 235 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 235 ~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
.|++..+|+++||++ .|+++..+.|..+++++...|.+....
T Consensus 104 ~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~ 145 (154)
T 3ia1_A 104 RFKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGAD 145 (154)
T ss_dssp TSSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred HhCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCc
Confidence 999999999999996 699999999999999999888887664
No 123
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.85 E-value=0.00014 Score=66.98 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=70.8
Q ss_pred HHHHHcCCeE-EEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013325 174 DAASVQDKWL-LVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 174 ~~Ak~~~K~L-lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 248 (445)
...+..++++ +|+++++||..|+. +... | ..+..... .++.+..++.+ +...++..|++..+|+++|+.
T Consensus 127 ~~~~~~~~~~~~v~F~a~wC~~C~~-~~p~-~--~~l~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~ 200 (226)
T 1a8l_A 127 QAIRNIDQDVRILVFVTPTCPYCPL-AVRM-A--HKFAIENTKAGKGKILGDMVEAI--EYPEWADQYNVMAVPKIVIQV 200 (226)
T ss_dssp HHHTTCCSCEEEEEEECSSCTTHHH-HHHH-H--HHHHHHHHHTTCCCEEEEEEEGG--GCHHHHHHTTCCSSCEEEEEE
T ss_pred HHHHhcCCCcEEEEEeCCCCCccHH-HHHH-H--HHHHHhcccccCCcEEEEEEEcc--cCHHHHHhCCCcccCeEEEEe
Confidence 3344555666 99999999999998 6433 2 33444444 47888877775 445688999999999988875
Q ss_pred CCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 249 PITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
.|+.+.++.|..+.++|.+.|...+
T Consensus 201 --~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 201 --NGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp --TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred --CCceeEEEcCCCCHHHHHHHHHHhh
Confidence 6888888999999998888887664
No 124
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=97.85 E-value=4.9e-05 Score=71.38 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=83.8
Q ss_pred hhcCCCCcC--cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhH
Q 013325 155 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG 229 (445)
Q Consensus 155 ~~f~pp~~~--~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg 229 (445)
.+|.+..++ +-..+|++.+ ...+|+++|+++++||..|+. |...+ ..+.+.+.. ++.+..++.+..+.
T Consensus 6 ~l~~~~~~v~~l~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~-~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~ 78 (244)
T 3q6o_A 6 ALYSPSDPLTLLQADTVRGAV---LGSRSAWAVEFFASWCGHCIA-FAPTW---XALAEDVKAWRPALYLAALDCAEETN 78 (244)
T ss_dssp CCSCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTCHHHHH-HHHHH---HHHHHHTGGGTTTEEEEEEETTSTTT
T ss_pred CCCCCCCCceeCChhhHHHHH---hhCCCeEEEEEECCcCHHHHH-HHHHH---HHHHHHHHhccCcEEEEEEeCCchhh
Confidence 345443332 3345666655 356799999999999999999 64322 344444554 79999999987788
Q ss_pred HHHHHHcCCCCCcEEEEEeCCC----CceeEEEecCCChHHHHHHHHhhhhcCC
Q 013325 230 KKVCTYYKLDSIPVVLVVDPIT----GQKMRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~t----g~~~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
..++..|++..+|++.++++.. |..+ .+.| .+++.+...|...+..+.
T Consensus 79 ~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 79 SAVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp HHHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred HHHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999621 2233 4556 589999999999887653
No 125
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=97.85 E-value=2.3e-05 Score=64.76 Aligned_cols=89 Identities=11% Similarity=0.138 Sum_probs=67.7
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-----cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-----NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 252 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-----~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg 252 (445)
..+|++||+++++||..|+. +... | ..+.+.+.. ++.+..++.+..+ ++. ++..+|+++++++ .|
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~-~~p~-~--~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~--~v~~~Pt~~~~~~-~~ 92 (121)
T 2djj_A 23 DDTKDVLIEFYAPWCGHCKA-LAPK-Y--EELGALYAKSEFKDRVVIAKVDATAND---VPD--EIQGFPTIKLYPA-GA 92 (121)
T ss_dssp CTTSCEEEEEECSSCTTHHH-HHHH-H--HHHHHHHTTSSCTTSSEEEEEETTTSC---CSS--CCSSSSEEEEECS-SC
T ss_pred cCCCCEEEEEECCCCHhHHH-hhHH-H--HHHHHHHhhcccCCceEEEEEECcccc---ccc--ccCcCCeEEEEeC-cC
Confidence 35799999999999999999 7553 3 355555654 7888888887654 343 8999999999985 34
Q ss_pred ce-eEEEecCCChHHHHHHHHhhhh
Q 013325 253 QK-MRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 253 ~~-~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+. +..+.|..+.++|...|.+.+.
T Consensus 93 ~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (121)
T 2djj_A 93 KGQPVTYSGSRTVEDLIKFIAENGK 117 (121)
T ss_dssp TTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred CCCceEecCCCCHHHHHHHHHhccC
Confidence 53 6678898899988887776654
No 126
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.78 E-value=0.00021 Score=63.65 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=68.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCCh---hHHHHHHHcCCC---------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTS---EGKKVCTYYKLD--------------- 239 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~---eg~~~~~~y~v~--------------- 239 (445)
.+|++||++..+||..|.. +...+ ..+.+.+. .++.++.++.+.. ....++..|++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~-~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 134 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRK-EMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD 134 (186)
T ss_dssp TTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred CCCEEEEEEEeCCCHhHHH-HHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHH
Confidence 5799999999999999987 43322 22333333 4677777777653 346677777764
Q ss_pred --------CCcEEEEEeCCCCceeEEEecCCC--hHHHHHHHHhhhh
Q 013325 240 --------SIPVVLVVDPITGQKMRSWCGMVQ--PESLLEDLVPFMD 276 (445)
Q Consensus 240 --------~~P~l~ii~p~tg~~~~~~~G~~~--~~~~l~~L~~~~~ 276 (445)
.+|+++|||+ .|+++.++.|..+ .+++...|...+.
T Consensus 135 ~~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 180 (186)
T 1jfu_A 135 LKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAATG 180 (186)
T ss_dssp HHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred hccccccCCCCEEEEECC-CCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence 7999999996 6999999999764 7888888887765
No 127
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=97.78 E-value=0.0001 Score=63.97 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=67.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCC-----------------hhHHHHHHHcCCCC
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDT-----------------SEGKKVCTYYKLDS 240 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s-----------------~eg~~~~~~y~v~~ 240 (445)
.+|++||++.+++|..|.. +...+ ..+.+-+. .++.++.++.+. .....++..|++..
T Consensus 40 ~gk~vll~F~~~~C~~C~~-~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 115 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRD-EMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANR 115 (158)
T ss_dssp TTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCS
T ss_pred CCCEEEEEEECCcCHHHHH-HHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCC
Confidence 5799999999999999987 43322 12222222 478888888765 12346889999999
Q ss_pred CcEEEEEeCCCCceeEEEecCC--ChHHHHHHHHhh
Q 013325 241 IPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF 274 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~~~~~G~~--~~~~~l~~L~~~ 274 (445)
+|+++||++ .|+++.++.|.. +..++++.+.+-
T Consensus 116 ~P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~~~ 150 (158)
T 3hdc_A 116 LPDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLKSL 150 (158)
T ss_dssp SSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTT
T ss_pred cceEEEEcC-CCCEEEEEeCCCccchHHHHHHHHhh
Confidence 999999996 699999999975 566777666554
No 128
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.76 E-value=5.8e-05 Score=63.41 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=67.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee-
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM- 255 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~- 255 (445)
.+|++||+++++||..|+. +... | ..+.+.+. .++++..++.+.. ..++..|++..+|+++|++. .|.+.
T Consensus 24 ~~~~vlv~f~a~wC~~C~~-~~p~-~--~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~-g~~~~~ 96 (133)
T 2dj3_A 24 PKKDVLIEFYAPWCGHCKQ-LEPI-Y--TSLGKKYKGQKDLVIAKMDATAN--DITNDQYKVEGFPTIYFAPS-GDKKNP 96 (133)
T ss_dssp TTSEEEEEECCTTCSHHHH-HHHH-H--HHHHHHHTTSSSEEEEEECTTTS--CCCCSSCCCSSSSEEEEECT-TCTTSC
T ss_pred CCCcEEEEEECCCChhHHH-HHHH-H--HHHHHHhcCCCCEEEEEecCCcC--HHHHhhcCCCcCCEEEEEeC-CCcccc
Confidence 4799999999999999999 7543 2 34444454 4689988777543 24566799999999999984 33322
Q ss_pred EEEe-cCCChHHHHHHHHhhhhcC
Q 013325 256 RSWC-GMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 256 ~~~~-G~~~~~~~l~~L~~~~~~~ 278 (445)
..+. |..++++|...|...+...
T Consensus 97 ~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 97 IKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp EECCSSCCSTTHHHHHHHHHSSSC
T ss_pred eEecCCCcCHHHHHHHHHHhcccc
Confidence 2355 5688899998888877643
No 129
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=97.75 E-value=0.00016 Score=62.99 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=66.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecC-------------------ChhH--------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDD-------------------TSEG-------- 229 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~-------------------s~eg-------- 229 (445)
.+|++||++.++||..|.. +. +.+.++.++ ++.++.++.+ +.+.
T Consensus 36 ~gk~~lv~F~~~~C~~C~~-~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVY-MA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY 108 (165)
T ss_dssp CSSEEEEEEECTTCTTHHH-HH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCcchhh-hH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence 5799999999999999988 43 555555554 6777777776 2211
Q ss_pred -----------HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCC-ChHHHHHHHHhhh
Q 013325 230 -----------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPFM 275 (445)
Q Consensus 230 -----------~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~-~~~~~l~~L~~~~ 275 (445)
..++..|++..+|+++|||+ .|+++. .|.. +.+.+...|...+
T Consensus 109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp SCTTSEEEECCSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred CCCCeeEEeChHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 26788899999999999996 688777 7888 8888888877654
No 130
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=97.74 E-value=0.00027 Score=61.74 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=70.0
Q ss_pred cCCeEEEEEeCCCCcc-hhhhhhhcccCChhHHHHhh-----ccEEEEEeecCC----hh--------------------
Q 013325 179 QDKWLLVNLQSTKEFS-SHMVLNRDTWANEAVSQTIS-----TNFIFWQVYDDT----SE-------------------- 228 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~-~~~~~~rdv~~~~~V~~~l~-----~~FV~~~~~~~s----~e-------------------- 228 (445)
.+||+||++..+||.+ |.. ....+ ..+.+-+. .++.++.++.+. ++
T Consensus 25 ~gk~vll~F~~~~C~~~C~~-~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~ 100 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPD-ELEKL---VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGST 100 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHH-HHHHH---HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCH
T ss_pred CCCEEEEEEEcCCCCchhHH-HHHHH---HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCH
Confidence 4799999999999998 977 32111 12333332 367777777652 22
Q ss_pred --HHHHHHHcCCCCCc---------------EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 229 --GKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 229 --g~~~~~~y~v~~~P---------------~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
...+++.|++...| +++|||+ .|+++.++.|..+++++...|...+..+
T Consensus 101 ~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 101 KQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF 166 (171)
T ss_dssp HHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 23678889998888 8999996 6999999999999999999998888744
No 131
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=97.74 E-value=0.00012 Score=76.84 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=88.6
Q ss_pred hhcCCCCcC--cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhH
Q 013325 155 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG 229 (445)
Q Consensus 155 ~~f~pp~~~--~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg 229 (445)
.+|.+..++ +-..+|++.+ .+.+|++||+++.+||..|+. +...+ ..+.+.+.. .+.+..++.+..+.
T Consensus 6 ~Ly~~~~~V~~Lt~~~f~~~v---~~~~k~vlV~FyA~WC~pCk~-~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~ 78 (519)
T 3t58_A 6 VLYSSSDPLTLLDADSVRPTV---LGSSSAWAVEFFASWCGHAIA-FAPTW---KELANDVKDWRPALNLAVLDCAEETN 78 (519)
T ss_dssp CSCCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTSHHHHH-HHHHH---HHHHHHHGGGTTTEEEEEEETTSGGG
T ss_pred ccCCCCCCcEECChHHHHHHH---HhCCCeEEEEEECCCCHHHHH-HHHHH---HHHHHHhhCcCCcEEEEEEECCcccc
Confidence 455554433 2345666655 356799999999999999999 65433 445555555 79999999988788
Q ss_pred HHHHHHcCCCCCcEEEEEeCC--CCceeEEEecCCChHHHHHHHHhhhhcCC
Q 013325 230 KKVCTYYKLDSIPVVLVVDPI--TGQKMRSWCGMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~--tg~~~~~~~G~~~~~~~l~~L~~~~~~~~ 279 (445)
..++..|+|..+|++.++++. .|+.+....|..+++.+.+.|...+..+.
T Consensus 79 ~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 79 SAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp HHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 899999999999999999952 34555556677899999999999987653
No 132
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.00012 Score=62.88 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=65.7
Q ss_pred cCCeEEEEEeCCCCcc--hhhhhhhcccCChhHHHHhh-----ccEEEEEeecCChh-----------------------
Q 013325 179 QDKWLLVNLQSTKEFS--SHMVLNRDTWANEAVSQTIS-----TNFIFWQVYDDTSE----------------------- 228 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~--~~~~~~rdv~~~~~V~~~l~-----~~FV~~~~~~~s~e----------------------- 228 (445)
.+|++||++..+||.. |.. .. +.+.++.+ .++.++.++.+...
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~-~~------~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~ 104 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQ-SN------SELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGL 104 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHH-HH------HHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGG
T ss_pred CCCEEEEEEEeCCCCchHHHH-HH------HHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCccc
Confidence 5799999999999999 987 43 34444332 34888888887653
Q ss_pred HHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 229 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 229 g~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
...++..|++..+|+++|||+ .|+++.++. +++++...|...+.
T Consensus 105 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 105 NSEVAKQYSIYKIPANILLSS-DGKILAKNL---RGEELKKKIENIVE 148 (150)
T ss_dssp GCHHHHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHHH
T ss_pred chHHHHHcCCCccCeEEEECC-CCEEEEccC---CHHHHHHHHHHHHh
Confidence 246788999999999999996 688877653 77778777777664
No 133
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=97.73 E-value=0.00014 Score=67.37 Aligned_cols=100 Identities=8% Similarity=0.195 Sum_probs=75.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCChhHHHHHHHcCCCCC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSI 241 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s~eg~~~~~~y~v~~~ 241 (445)
-..+|++++ .++|++||+++.+||..|+. +...+ ..+.+.+... +.+..++.+. ...++..|++..+
T Consensus 21 ~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~-~~p~~---~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~ 90 (241)
T 3idv_A 21 NDANFDNFV----ADKDTVLLEFYAPWCGHCKQ-FAPEY---EKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSGY 90 (241)
T ss_dssp CTTTHHHHH----TTCSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSS
T ss_pred cccCHHHHH----hcCCeEEEEEECCCCHHHHH-hhHHH---HHHHHHHhhcCCceEEEEEeccC--CHHHHHhcCCCcC
Confidence 345666654 56899999999999999998 64332 3333444433 8888777754 4578999999999
Q ss_pred cEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
|+++++. .|+.+ ...|..+.+++...+...+..
T Consensus 91 Pt~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~ 123 (241)
T 3idv_A 91 PTIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQP 123 (241)
T ss_dssp SEEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred CEEEEEc--CCCcc-cccCcccHHHHHHHHhhccCc
Confidence 9999997 47766 478989999999888887664
No 134
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=97.73 E-value=0.00015 Score=61.43 Aligned_cols=91 Identities=10% Similarity=0.162 Sum_probs=64.8
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChh-H-HHH--------------------HHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-G-KKV--------------------CTY 235 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~e-g-~~~--------------------~~~ 235 (445)
.+|++||++..+||..|.. +...+-..+.+.+.+. .++.++.++.+... . ..+ +..
T Consensus 26 ~gk~vll~F~a~~C~~C~~-~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRK-FEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL 104 (142)
T ss_dssp CCSEEEEEECCSSCHHHHH-HHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred CCCEEEEEEECCCCccHHH-HHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence 5799999999999999998 6544444555666554 46888888877432 2 122 337
Q ss_pred cCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 236 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 236 y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
|++..+|+++|||+ .|+++. +..+.+++.+.|.+.
T Consensus 105 ~~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 105 YDIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLATQ 139 (142)
T ss_dssp SCCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHHC-
T ss_pred cCCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHHHH
Confidence 99999999999996 688765 557777777666543
No 135
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=97.73 E-value=0.00016 Score=62.51 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=67.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhHH---------------------HHHHHc
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGK---------------------KVCTYY 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg~---------------------~~~~~y 236 (445)
.+|++||++..+||..|.. ....+ ..+.+-+. .++.++.++.+..+.. .++..|
T Consensus 34 ~gk~vll~F~a~wC~~C~~-~~~~l---~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 109 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAA-HNLAL---RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLY 109 (152)
T ss_dssp GGSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHH
T ss_pred CCCEEEEEEEcCCChhhHH-HHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHc
Confidence 4799999999999999987 43221 12222222 3588888888765431 278889
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
++..+|+++|||+ .|+++.++.|..+.++.+..+.+-
T Consensus 110 ~v~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~~~ 146 (152)
T 2lrt_A 110 NVTNLPSVFLVNR-NNELSARGENIKDLDEAIKKLLEG 146 (152)
T ss_dssp TCCSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHHGG
T ss_pred CcccCceEEEECC-CCeEEEecCCHHHHHHHHHHHHhc
Confidence 9999999999996 699999999988888777666543
No 136
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=97.70 E-value=0.00023 Score=59.00 Aligned_cols=88 Identities=10% Similarity=0.091 Sum_probs=66.0
Q ss_pred HHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhH--HHHHHHcCCCC-CcEEEEEeC
Q 013325 174 DAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--KKVCTYYKLDS-IPVVLVVDP 249 (445)
Q Consensus 174 ~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg--~~~~~~y~v~~-~P~l~ii~p 249 (445)
....+++++++|+.|++||..|.+ + .+.+.++.+ .+.-++.++++.... ..++..|+|.+ .|.++++.
T Consensus 18 ~~ii~~~~~vvi~khatwCgpc~~-~------~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k- 89 (112)
T 3iv4_A 18 EQVIEENKYVFVLKHSETCPISAN-A------YDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFV- 89 (112)
T ss_dssp HHHHHHCSEEEEEEECTTCHHHHH-H------HHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEE-
T ss_pred HHHHhcCCCEEEEEECCcCHhHHH-H------HHHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEE-
Confidence 334445999999999999999998 4 345555553 466777778765433 56899999995 99999997
Q ss_pred CCCceeEEEe-cCCChHHHHHH
Q 013325 250 ITGQKMRSWC-GMVQPESLLED 270 (445)
Q Consensus 250 ~tg~~~~~~~-G~~~~~~~l~~ 270 (445)
+|++++..+ |.++.+.+.+.
T Consensus 90 -~G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 90 -NGEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp -TTEEEEEEEGGGCSHHHHHHH
T ss_pred -CCEEEEEeeccccCHHHHHHh
Confidence 799988754 67888866543
No 137
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=97.66 E-value=0.00016 Score=63.60 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=57.3
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhH----------------------HHH
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEG----------------------KKV 232 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg----------------------~~~ 232 (445)
.-.+|++||++..+||..|.. +...+ ..+.+-+.+ ++.++.++++.... ..+
T Consensus 45 ~~~gk~vll~F~a~wC~~C~~-~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (165)
T 3s9f_A 45 SLSGKTVFFYFSASWCPPCRG-FTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEAL 120 (165)
T ss_dssp GGTTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HcCCCEEEEEEECCcChhHHH-HHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHH
Confidence 335899999999999999988 53322 223333443 67777777776533 678
Q ss_pred HHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 233 CTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 233 ~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
++.|++..+|+++||++.+|+++.+
T Consensus 121 ~~~~~v~~~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 121 TKKYSVESIPTLIGLNADTGDTVTT 145 (165)
T ss_dssp HHHTTCCSSSEEEEEETTTCCEEES
T ss_pred HHHcCCCCCCEEEEEeCCCCEEEec
Confidence 9999999999999999755887765
No 138
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=97.64 E-value=0.00026 Score=60.22 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=56.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChh----------------------HHHHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~e----------------------g~~~~~ 234 (445)
.+|++||++..++|..|+. +...+ ..+.+-+. .++.++.++.+... ...+++
T Consensus 27 ~gk~vll~F~a~wC~~C~~-~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 102 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRA-FTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTT 102 (144)
T ss_dssp TTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHH-HHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHH
Confidence 5799999999999999988 54332 23333344 47888888877532 467889
Q ss_pred HcCCCCCcEEEEEeCCCCceeEE
Q 013325 235 YYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 235 ~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
.|++..+|+++||++.+|+++.+
T Consensus 103 ~~~v~~~P~~~lid~~~G~i~~~ 125 (144)
T 1i5g_A 103 GFDVKSIPTLVGVEADSGNIITT 125 (144)
T ss_dssp HTTCCSSSEEEEEETTTCCEEES
T ss_pred HcCCCCCCEEEEEECCCCcEEec
Confidence 99999999999999556887655
No 139
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=97.64 E-value=0.00012 Score=56.05 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred EEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCC
Q 013325 183 LLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 262 (445)
Q Consensus 183 LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~ 262 (445)
.+|+++++||..|+. +... | +.+.+-...++.+..++.+.. ..++..|++..+|++++ +|+. ++.|..
T Consensus 4 ~vv~f~~~~C~~C~~-~~~~-l--~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~~ 71 (85)
T 1nho_A 4 NIEVFTSPTCPYCPM-AIEV-V--DEAKKEFGDKIDVEKIDIMVD--REKAIEYGLMAVPAIAI----NGVV--RFVGAP 71 (85)
T ss_dssp CEEEESCSSSCCSTT-HHHH-H--HHHHHHHCSSCCEEEECTTTC--GGGGGGTCSSCSSEEEE----TTTE--EEECSS
T ss_pred EEEEEECCCCcchHH-HHHH-H--HHHHHHhcCCeEEEEEECCCC--HHHHHhCCceeeCEEEE----CCEE--EEccCC
Confidence 478899999999998 6442 2 333334444677777777543 35788999999999998 5776 788988
Q ss_pred ChHHHHHHHHhhh
Q 013325 263 QPESLLEDLVPFM 275 (445)
Q Consensus 263 ~~~~~l~~L~~~~ 275 (445)
+.++|.+.|.+.+
T Consensus 72 ~~~~l~~~l~~~l 84 (85)
T 1nho_A 72 SREELFEAINDEM 84 (85)
T ss_dssp CCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHh
Confidence 8998888887664
No 140
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=97.62 E-value=0.00015 Score=62.76 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=60.0
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCC--CcchhhhhhhcccCChhHHHHhh--ccEE--EEEeecCChhHHHHHHHcC
Q 013325 164 MFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMVLNRDTWANEAVSQTIS--TNFI--FWQVYDDTSEGKKVCTYYK 237 (445)
Q Consensus 164 ~~~gs~~eA~~~Ak~~~K~LlV~l~~~~--~f~~~~~~~rdv~~~~~V~~~l~--~~FV--~~~~~~~s~eg~~~~~~y~ 237 (445)
+-..+|++.+. ..+.++|++..++ |..|+. |. |.+.++.+ .++. ++.+++ .+...++..|+
T Consensus 22 l~~~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~-l~------P~l~~la~~~~~v~~~~~~Vd~--d~~~~la~~~~ 88 (142)
T 2es7_A 22 VEASTVDDWIK----RVGDGVILLSSDPRRTPEVSD-NP------VMIAELLREFPQFDWQVAVADL--EQSEAIGDRFN 88 (142)
T ss_dssp CCCC------------CCSEEEEECCCSCC----CC-HH------HHHHHHHHTCTTSCCEEEEECH--HHHHHHHHTTT
T ss_pred cccccHHHHHH----hCCCEEEEEECCCCCCccHHH-HH------HHHHHHHHHhcccceeEEEEEC--CCCHHHHHhcC
Confidence 34567887764 3344677777665 888988 53 34444433 3566 776666 45667999999
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+.++|+++++ +.|+.+.++.|..+.+++.+.|...+..
T Consensus 89 V~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 89 VRRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp CCSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred CCcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999 4799999999999999998888888763
No 141
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=97.62 E-value=0.00026 Score=60.38 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=56.9
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChh----------------------HHHHH
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVC 233 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~e----------------------g~~~~ 233 (445)
-.+|++||++..++|..|.. +...+ ..+.+-+. .++.++.++.+... ...++
T Consensus 26 ~~gk~vll~F~a~wC~~C~~-~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 101 (146)
T 1o8x_A 26 LAGKLVFFYFSASWCPPARG-FTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLS 101 (146)
T ss_dssp GTTCEEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHH
T ss_pred hCCCEEEEEEEccCCHHHHH-HHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHH
Confidence 35899999999999999988 54322 23333344 47777777777532 46788
Q ss_pred HHcCCCCCcEEEEEeCCCCceeEEE
Q 013325 234 TYYKLDSIPVVLVVDPITGQKMRSW 258 (445)
Q Consensus 234 ~~y~v~~~P~l~ii~p~tg~~~~~~ 258 (445)
+.|++..+|+++||++.+|+++.+.
T Consensus 102 ~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 102 KHFNVESIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHhCCCCCCEEEEEECCCCeEEEec
Confidence 9999999999999995568877553
No 142
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=97.58 E-value=0.00029 Score=59.75 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=56.4
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChh----------------------HHHHH
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVC 233 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~e----------------------g~~~~ 233 (445)
-.+|++||++..++|..|+. +...+ ..+.+-+. .++.++.++.+... ...++
T Consensus 26 ~~gk~vll~F~a~wC~~C~~-~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (144)
T 1o73_A 26 LVGKTVFLYFSASWCPPCRG-FTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELG 101 (144)
T ss_dssp GTTCEEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH
T ss_pred hCCCEEEEEEECcCCHHHHH-HHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHH
Confidence 36899999999999999988 53322 12333333 46777777777632 45788
Q ss_pred HHcCCCCCcEEEEEeCCCCceeEEE
Q 013325 234 TYYKLDSIPVVLVVDPITGQKMRSW 258 (445)
Q Consensus 234 ~~y~v~~~P~l~ii~p~tg~~~~~~ 258 (445)
+.|++..+|+++||++.+|+++.+.
T Consensus 102 ~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 102 KTFGVESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHTCCSSSEEEEEETTTCCEEESC
T ss_pred HHcCCCCCCEEEEEECCCCeEEecc
Confidence 9999999999999995578877553
No 143
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=97.56 E-value=0.00016 Score=55.35 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=60.2
Q ss_pred CeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEec
Q 013325 181 KWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 181 K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G 260 (445)
...+|++.++||..|+. +... | ..+.+-...++.+..++.+.. ..++..|++..+|++++ +|+. ++.|
T Consensus 3 ~~~vv~f~~~~C~~C~~-~~~~-l--~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G 70 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPA-AKRV-V--EEVANEMPDAVEVEYINVMEN--PQKAMEYGIMAVPTIVI----NGDV--EFIG 70 (85)
T ss_dssp CEEEEEEECCCSSCCCT-HHHH-H--HHHHHHCSSSEEEEEEESSSS--CCTTTSTTTCCSSEEEE----TTEE--ECCS
T ss_pred ceEEEEEeCCCCCchHH-HHHH-H--HHHHHHcCCceEEEEEECCCC--HHHHHHCCCcccCEEEE----CCEE--eeec
Confidence 46789999999999998 6432 2 223333334788887787643 35678899999999988 5776 7789
Q ss_pred CCChHHHHHHHHhh
Q 013325 261 MVQPESLLEDLVPF 274 (445)
Q Consensus 261 ~~~~~~~l~~L~~~ 274 (445)
..+.+++...|.+.
T Consensus 71 ~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 71 APTKEALVEAIKKR 84 (85)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 88889888877664
No 144
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=97.56 E-value=0.0002 Score=60.87 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=58.8
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhH----------------------HHHHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG----------------------KKVCTY 235 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg----------------------~~~~~~ 235 (445)
.+|++||++.++||..|.. ....+-.++.+.+.++ .++.++.++.+.... ..++..
T Consensus 30 ~gk~vll~F~a~wC~~C~~-~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAE-MIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL 108 (142)
T ss_dssp CCSEEEEEECCSSSHHHHH-HHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred CCCEEEEEEECCCCccHHH-HHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence 3699999999999999988 6544444444555443 578888888776522 125778
Q ss_pred cCCCCCcEEEEEeCCCCceeEEEec
Q 013325 236 YKLDSIPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 236 y~v~~~P~l~ii~p~tg~~~~~~~G 260 (445)
|++..+|+++|||+ .|.++.+..|
T Consensus 109 ~~v~~~P~~~lid~-~G~i~~~~~~ 132 (142)
T 3eur_A 109 YDLRAIPTLYLLDK-NKTVLLKDAT 132 (142)
T ss_dssp SCCTTCSEEEEECT-TCBEEEEEEC
T ss_pred cCCCcCCeEEEECC-CCcEEecCCC
Confidence 99999999999995 6888877654
No 145
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=97.56 E-value=0.00013 Score=60.85 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=50.0
Q ss_pred cCCeEEEEEeCC-------CCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCC-----hhHHHHHHHcCCCCCcE
Q 013325 179 QDKWLLVNLQST-------KEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDT-----SEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 179 ~~K~LlV~l~~~-------~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s-----~eg~~~~~~y~v~~~P~ 243 (445)
.+|+++|++.++ ||..|.. +. +.+.++.+ .++.|+.++++. .+...++..|++..+|+
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~-~~------p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt 95 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQ-AE------PVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPT 95 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHH-HH------HHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSE
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHH-hh------HHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCE
Confidence 489999999999 9999998 53 44455444 478999888853 22345778899999999
Q ss_pred EEEEeC
Q 013325 244 VLVVDP 249 (445)
Q Consensus 244 l~ii~p 249 (445)
+++++.
T Consensus 96 ~~~~~~ 101 (123)
T 1wou_A 96 LLKYGT 101 (123)
T ss_dssp EEETTS
T ss_pred EEEEcC
Confidence 999985
No 146
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.52 E-value=0.00011 Score=59.49 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=39.2
Q ss_pred hhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 8 ~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
.+.++.|...+++ ||++++.|+..|..|||||+.||...|+..
T Consensus 37 ~d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 37 ADFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3456789999999 999999999999999999999999999864
No 147
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=97.51 E-value=0.00047 Score=69.21 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=76.4
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh------hccEEEEEeecCChhHHHHHHHcCCC
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI------STNFIFWQVYDDTSEGKKVCTYYKLD 239 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l------~~~FV~~~~~~~s~eg~~~~~~y~v~ 239 (445)
..+|++++ ..++++||+++.+||..|+. +... | ..+.+.+ +.++.+..++.+. ...++..|++.
T Consensus 12 ~~~f~~~~----~~~~~vlV~F~a~wC~~C~~-~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~--~~~l~~~~~v~ 81 (382)
T 2r2j_A 12 TENIDEIL----NNADVALVNFYADWCRFSQM-LHPI-F--EEASDVIKEEFPNENQVVFARVDCDQ--HSDIAQRYRIS 81 (382)
T ss_dssp TTTHHHHH----HHCSEEEEEEECTTCHHHHH-HHHH-H--HHHHHHHTTCC---CCEEEEEEETTT--CHHHHHHTTCC
T ss_pred HHHHHHHH----hcCCeEEEEEECCCCHHHHH-HHHH-H--HHHHHHHHhhcCCCCceEEEEEECCc--cHHHHHhcCCC
Confidence 45677765 35799999999999999999 6443 3 3444455 2348888877754 35689999999
Q ss_pred CCcEEEEEeCCCCceeE-EEecCCChHHHHHHHHhhhhc
Q 013325 240 SIPVVLVVDPITGQKMR-SWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 240 ~~P~l~ii~p~tg~~~~-~~~G~~~~~~~l~~L~~~~~~ 277 (445)
.||++.++. .|+.+. .+.|..+++.+.+.|...+..
T Consensus 82 ~~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 82 KYPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKSD 118 (382)
T ss_dssp EESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred cCCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhccC
Confidence 999999886 588776 478999999999988887753
No 148
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=97.49 E-value=8.7e-05 Score=60.84 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh--hHHHHHHHcCCCCCcEEEEEe
Q 013325 171 KAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 171 eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~--eg~~~~~~y~v~~~P~l~ii~ 248 (445)
+++..|...+|..+|++..+||..|+. |.. +| .++- +.|-...++.+.. +...++..|++..+|+++|
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~-~~p-~~-----~~~a-~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i-- 72 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQD-QKE-LF-----GAAF-DQVPYVECSPNGPGTPQAQECTEAGITSYPTWII-- 72 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHH-HHH-HH-----GGGG-GGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEE--
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHH-HHH-HH-----HHHH-HhCCEEEEecccccchhHHHHHHcCCeEeCEEEE--
Confidence 456777778888999999999999998 632 22 2222 2222333344333 4567899999999999776
Q ss_pred CCCCceeEEEecCCChHHHHHHH
Q 013325 249 PITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
+|+. +.|..+.++|...+
T Consensus 73 --~G~~---~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 73 --NGRT---YTGVRSLEALAVAS 90 (106)
T ss_dssp --TTEE---EESCCCHHHHHHHH
T ss_pred --CCEE---ecCCCCHHHHHHHh
Confidence 5763 78988888776554
No 149
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=97.48 E-value=0.00043 Score=69.07 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=70.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCC------hh-------------------HHHH
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDT------SE-------------------GKKV 232 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s------~e-------------------g~~~ 232 (445)
.+|++||++..+||..|.. +...+ ..+.+-+. .++.++.++.+. .+ ...+
T Consensus 81 ~GK~vLl~F~atwC~~C~~-~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l 156 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQR-AIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYAT 156 (352)
T ss_dssp TTSEEEEEEECTTCHHHHH-HHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHH
T ss_pred CCCEEEEEEECCCChhHHH-HHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHH
Confidence 4799999999999999988 53322 12222233 368888887542 11 1357
Q ss_pred HHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 233 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 233 ~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
++.|++..+|+++|||+ +|+++.++.|..+.+++...|.+.+..
T Consensus 157 ~~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e 200 (352)
T 2hyx_A 157 WTNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLND 200 (352)
T ss_dssp HHHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 78899999999999996 699999999999999998888888764
No 150
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.47 E-value=0.00056 Score=71.11 Aligned_cols=100 Identities=10% Similarity=0.161 Sum_probs=79.0
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
-..+|++++ +.++++||+++.+||..|+. +... | ..+.+.++. ++.+..++.+.. ..++..|++..||+
T Consensus 20 ~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~-~~p~-~--~~~a~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt 89 (504)
T 2b5e_A 20 ATDSFNEYI----QSHDLVLAEFFAPWCGHCKN-MAPE-Y--VKAAETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPS 89 (504)
T ss_dssp CTTTHHHHH----TTCSEEEEEEECTTCHHHHH-HHHH-H--HHHHHHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSE
T ss_pred CHHHHHHHH----hcCCeEEEEEECCCCHHHHH-hHHH-H--HHHHHHhccCCeEEEEEECCCC--HHHHHhcCCCcCCE
Confidence 456788865 46899999999999999999 6443 3 345555665 488888887554 67999999999999
Q ss_pred EEEEeCCCCce--eEEEecCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~~--~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+.++. .|+. +....|..+.+.+...|...+.
T Consensus 90 ~~~~~--~g~~~~~~~~~G~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 90 LKIFK--NSDVNNSIDYEGPRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp EEEEE--TTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred EEEEe--CCccccceeecCCCCHHHHHHHHHHhcC
Confidence 99997 4765 7788999999999988887764
No 151
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.45 E-value=0.00017 Score=48.27 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=33.6
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (445)
.++.|++++++ |-+.+.|+..|..+|||++.|++..|
T Consensus 4 ~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35589999999 99999999999999999999998764
No 152
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=97.42 E-value=0.00088 Score=61.89 Aligned_cols=99 Identities=10% Similarity=0.203 Sum_probs=72.2
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCChhHHHHHHHcCCCCC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSI 241 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s~eg~~~~~~y~v~~~ 241 (445)
-..+|++++ ..+++++|+++.+||..|+. +... | ..+...+... +.+..++.+. ...++..|++..+
T Consensus 136 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~-~~p~-~--~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~ 205 (241)
T 3idv_A 136 TKENFDEVV----NDADIILVEFYAPWCGHCKK-LAPE-Y--EKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGY 205 (241)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECTTCTGGGG-THHH-H--HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSS
T ss_pred cHHHHHHhh----ccCCeEEEEEECCCCHHHHH-hHHH-H--HHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCccc
Confidence 345677655 45789999999999999998 6432 1 2233333332 7777777654 3568999999999
Q ss_pred cEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|+++++. .|+.+. ..|..+.+.|++.|.+.+.
T Consensus 206 Pt~~~~~--~g~~~~-~~g~~~~~~l~~~l~~~~~ 237 (241)
T 3idv_A 206 PTLKIFR--KGRPYD-YNGPREKYGIVDYMIEQSG 237 (241)
T ss_dssp SEEEEEE--TTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred CEEEEEE--CCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence 9999998 477665 7898999999988877654
No 153
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=97.41 E-value=0.00019 Score=52.48 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=40.5
Q ss_pred CCChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 4 VLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
.||..+ ..+|..|+.. ||...+-+..+|+.+|||++.|+..|-+.
T Consensus 2 ~ls~~q-~~mv~~~s~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 2 TLSPEQ-QEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCCHHH-HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 367755 5599999999 99999999999999999999999999874
No 154
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.37 E-value=0.00026 Score=73.08 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=77.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
..+|++++ .....++++||+++.+||..|+. |... | ..+.+.+...+.+..++.+. ...++..|++..||++.
T Consensus 8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~-~~p~-~--~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~ 80 (481)
T 3f8u_A 8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKR-LAPE-Y--EAAATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLK 80 (481)
T ss_dssp TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHH-HHHH-H--HHHHHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEE
T ss_pred HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHH-hHHH-H--HHHHHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEE
Confidence 34566666 12223499999999999999999 7543 3 45556666667777766654 56789999999999999
Q ss_pred EEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 246 VVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++. .|+.+..+.|..+.+.+...|...+.
T Consensus 81 ~~~--~g~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 81 IFR--DGEEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp EEE--TTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred EEe--CCceeeeecCccCHHHHHHHHHhhcc
Confidence 995 68888888999999999988887765
No 155
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=97.37 E-value=0.00094 Score=66.08 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcc------cCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCC
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDT------WANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDS 240 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv------~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~ 240 (445)
+|++++ ++++++||+++.+||. |+. +.... | +.+.+.++. ++.+..++.+.. ..++..|++..
T Consensus 20 ~f~~~i----~~~~~~lV~F~a~wC~-c~~-~~p~~~~~~~~~--~~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~ 89 (350)
T 1sji_A 20 NFKQVL----KKYDVLCLYYHESVSS-DKV-AQKQFQLKEIVL--ELVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDE 89 (350)
T ss_dssp HHHHHH----TTCSEEEEEEECCSCS-SST-TSHHHHHHHHHH--HHHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCS
T ss_pred HHHHHH----hhCCeEEEEEECCCCc-chh-hCchhhhhhHHH--HHHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCc
Confidence 455544 4689999999999999 866 43321 3 245556665 588888887543 56899999999
Q ss_pred CcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 241 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
||++.++. .|+ +..+.|..+++.+.+.|...+.
T Consensus 90 ~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~~~~ 122 (350)
T 1sji_A 90 EGSLYVLK--GDR-TIEFDGEFAADVLVEFLLDLIE 122 (350)
T ss_dssp TTEEEEEE--TTE-EEEECSCCCHHHHHHHHHTTSS
T ss_pred cceEEEEE--CCc-EEEecCCCCHHHHHHHHHHhcC
Confidence 99999995 577 5578899999988887776654
No 156
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=97.36 E-value=0.00033 Score=58.63 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=60.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..+|.+.+..+ ..+++++|+++.+||.+|+. |. +.+.++-++ +..|+.++++.. +..|++..+|+
T Consensus 10 ~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~-~~------p~l~~la~~~~~v~f~kvd~d~~-----~~~~~v~~~PT 76 (118)
T 3evi_A 10 GNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLL-VN------QHLSLLARKFPETKFVKAIVNSC-----IQHYHDNCLPT 76 (118)
T ss_dssp GGGHHHHTTTC-CTTCEEEEEEECTTSHHHHH-HH------HHHHHHHHHCTTSEEEEEEGGGT-----STTCCGGGCSE
T ss_pred HHHHHHHHHhc-CCCCeEEEEEeCCCChHHHH-HH------HHHHHHHHHCCCCEEEEEEhHHh-----HHHCCCCCCCE
Confidence 34565555322 12459999999999999999 64 444444443 467778888753 57899999999
Q ss_pred EEEEeCCCCceeEEEecCC
Q 013325 244 VLVVDPITGQKMRSWCGMV 262 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~ 262 (445)
++++. +|+.+.++.|..
T Consensus 77 ~~~fk--~G~~v~~~~G~~ 93 (118)
T 3evi_A 77 IFVYK--NGQIEAKFIGII 93 (118)
T ss_dssp EEEEE--TTEEEEEEESTT
T ss_pred EEEEE--CCEEEEEEeChh
Confidence 99997 699999999864
No 157
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=97.33 E-value=0.00015 Score=68.78 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
.|.+++..+ ..++++||+++.+||..|+. +. +.+..+... ++.|+.++++. ..++..|++..+|+++
T Consensus 122 ~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~-l~------p~l~~La~~~~~v~f~kVd~d~---~~l~~~~~I~~~PTll 190 (245)
T 1a0r_P 122 QFLETIEKE-QKITTIVVHIYEDGIKGCDA-LN------SSLICLAAEYPMVKFCKIKASN---TGAGDRFSSDVLPTLL 190 (245)
T ss_dssp HHHHHHHSS-CTTCEEEEEEECTTSTTHHH-HH------HHHHHHHHHCTTSEEEEEEHHH---HCCTTSSCTTTCSEEE
T ss_pred HHHHHHHHh-cCCCEEEEEEECCCChHHHH-HH------HHHHHHHHHCCCCEEEEEeCCc---HHHHHHCCCCCCCEEE
Confidence 444444322 25899999999999999999 64 334444332 47788777744 4477889999999998
Q ss_pred EEeCCCCceeEEEecCCC---hHHHHHHHHhhhhcC
Q 013325 246 VVDPITGQKMRSWCGMVQ---PESLLEDLVPFMDGG 278 (445)
Q Consensus 246 ii~p~tg~~~~~~~G~~~---~~~~l~~L~~~~~~~ 278 (445)
|+. .|+++.++.|..+ .+-....|..+|..+
T Consensus 191 ~~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 191 VYK--GGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp EEE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred EEE--CCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 886 6999999988642 112344566666655
No 158
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=97.33 E-value=0.0007 Score=50.88 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=54.3
Q ss_pred EEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCC
Q 013325 183 LLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 262 (445)
Q Consensus 183 LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~ 262 (445)
+.|++..+||..|+. +...+ ..+.+.+..++.+..++ ...++..|++..+|+++| +|+.+.. |..
T Consensus 2 ~~v~f~a~wC~~C~~-~~~~l---~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G~~~~~--G~~ 66 (77)
T 1ilo_A 2 MKIQIYGTGCANCQM-LEKNA---REAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV----DGELKIM--GRV 66 (77)
T ss_dssp EEEEEECSSSSTTHH-HHHHH---HHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TTEEEEC--SSC
T ss_pred cEEEEEcCCChhHHH-HHHHH---HHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE----CCEEEEc--CCC
Confidence 457888999999998 64433 34444455578888766 346788999999999988 5877655 886
Q ss_pred -ChHHHHHHH
Q 013325 263 -QPESLLEDL 271 (445)
Q Consensus 263 -~~~~~l~~L 271 (445)
+.+++.+.|
T Consensus 67 ~~~~~l~~~l 76 (77)
T 1ilo_A 67 ASKEEIKKIL 76 (77)
T ss_dssp CCHHHHHHHC
T ss_pred CCHHHHHHHh
Confidence 888776543
No 159
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.33 E-value=0.0011 Score=57.72 Aligned_cols=92 Identities=12% Similarity=0.168 Sum_probs=62.4
Q ss_pred cCCe-EEEEEe-CCCCcchhhhhhhcccCChhHHHHh-hccEEEEEeecCChhH-------------------HHHHHHc
Q 013325 179 QDKW-LLVNLQ-STKEFSSHMVLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG-------------------KKVCTYY 236 (445)
Q Consensus 179 ~~K~-LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l-~~~FV~~~~~~~s~eg-------------------~~~~~~y 236 (445)
.+|+ ++|++. .++|..|.. ....+ ..+.+-+ ..++.++.++.++.+. ..++..|
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~-~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTR-EASAF---RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELY 102 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHH-HHHHH---HHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHT
T ss_pred cCCCCEEEEEEcCCCCCchHH-HHHHH---HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHc
Confidence 3566 999999 999999987 43221 1222222 2358888888876532 4567789
Q ss_pred CCCC----CcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 237 KLDS----IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 237 ~v~~----~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
++.. +|+++|||+ .|+++..+.|.......++.+.+.+
T Consensus 103 ~v~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il~~l 144 (161)
T 3drn_A 103 GAKGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEALKAL 144 (161)
T ss_dssp TCCCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHHHHH
T ss_pred CCCCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHHHHH
Confidence 8888 999999996 6999999999544444444444443
No 160
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=97.31 E-value=0.0005 Score=63.81 Aligned_cols=99 Identities=13% Similarity=0.229 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
.+|.+++..+ ..++++||+++.+||..|+. |. +.+..+... ++.|..++++ ...++..|++..+|++
T Consensus 108 ~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~-l~------p~l~~la~~~~~v~f~~vd~~---~~~l~~~~~i~~~PTl 176 (217)
T 2trc_P 108 EQFLETIEKE-QKVTTIVVNIYEDGVRGCDA-LN------SSLECLAAEYPMVKFCKIRAS---NTGAGDRFSSDVLPTL 176 (217)
T ss_dssp HHHHHHHHHS-CTTCEEEEEEECTTSTTHHH-HH------HHHHHHHTTCTTSEEEEEEHH---HHTCSTTSCGGGCSEE
T ss_pred HHHHHHHHhc-CCCcEEEEEEECCCCccHHH-HH------HHHHHHHHHCCCeEEEEEECC---cHHHHHHCCCCCCCEE
Confidence 4555554322 23599999999999999999 64 344444443 5778877875 3457778999999999
Q ss_pred EEEeCCCCceeEEEecCCCh---HHHHHHHHhhhhcC
Q 013325 245 LVVDPITGQKMRSWCGMVQP---ESLLEDLVPFMDGG 278 (445)
Q Consensus 245 ~ii~p~tg~~~~~~~G~~~~---~~~l~~L~~~~~~~ 278 (445)
+|+. .|+++.++.|..+. +-....|..+|..+
T Consensus 177 ~~~~--~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 177 LVYK--GGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp EEEE--TTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred EEEE--CCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 9986 79999999886543 11123444555544
No 161
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.30 E-value=0.00065 Score=59.25 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=63.4
Q ss_pred cCCeEEEEEeCCCCcc-hhhhhhhcccCChhHHHHhhc-------cEEEEEeecCC----hhH-----------------
Q 013325 179 QDKWLLVNLQSTKEFS-SHMVLNRDTWANEAVSQTIST-------NFIFWQVYDDT----SEG----------------- 229 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~-~~~~~~rdv~~~~~V~~~l~~-------~FV~~~~~~~s----~eg----------------- 229 (445)
.+||+||++..+||.+ |.. . .+.+.++.++ ++.++.++.+. ++.
T Consensus 34 ~gk~vll~f~~~~C~~~C~~-~------~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d 106 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPT-T------LLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSG 106 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHH-H------HHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECC
T ss_pred CCCEEEEEEECCCCcchhHH-H------HHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeC
Confidence 5799999999999997 987 3 2444444332 57788777653 221
Q ss_pred -----HHHHHHcCC---------------CCCcEEEEEeCCCCceeEEEecCC--ChHHHHHHHHhh
Q 013325 230 -----KKVCTYYKL---------------DSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF 274 (445)
Q Consensus 230 -----~~~~~~y~v---------------~~~P~l~ii~p~tg~~~~~~~G~~--~~~~~l~~L~~~ 274 (445)
..+++.|++ ..+|+++||+ .|+++..+.|.. +++++++.|.+.
T Consensus 107 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 107 SPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 345555553 4689999999 699999999987 888888887764
No 162
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.30 E-value=0.00084 Score=60.53 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=66.7
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChh-----------------------HHHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-----------------------GKKVC 233 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~e-----------------------g~~~~ 233 (445)
.+|++||++. .++|..|.. ....+ ..+.+-+. .++.++.++.++.+ ...++
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~-~~~~l---~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPT-EIAAF---SKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELS 119 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHH-HHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHH
T ss_pred CCCcEEEEEEcCCCCCCcHH-HHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHH
Confidence 3789999999 999999987 32211 11222222 36888888877643 23466
Q ss_pred HHcCCC-----CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhhh
Q 013325 234 TYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 276 (445)
Q Consensus 234 ~~y~v~-----~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~~ 276 (445)
..|++. .+|+++||++ +|+++..+.|.. ++++++..|.....
T Consensus 120 ~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 120 QAAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS 170 (195)
T ss_dssp HHHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred HHhCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 778888 8999999996 699999888864 67888888877664
No 163
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=97.29 E-value=0.00023 Score=60.57 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=60.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc----cEEEEEeecCChhH------------------------H
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST----NFIFWQVYDDTSEG------------------------K 230 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~----~FV~~~~~~~s~eg------------------------~ 230 (445)
.+|++||++..+||..|.. . .+.+.++.++ ++.++.++.+.... .
T Consensus 31 ~gk~vll~F~a~wC~~C~~-~------~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 103 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRA-R------NVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKES 103 (143)
T ss_dssp SCCEEEEEEECTTCHHHHH-H------HHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGS
T ss_pred CCCEEEEEEEcCcCHHHHH-H------HHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccch
Confidence 5799999999999999987 4 2556665543 58888887774321 3
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 231 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 231 ~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
.++..|++..+|+++||++ .|+++.+. .+++++.+.|.
T Consensus 104 ~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~ 141 (143)
T 4fo5_A 104 ELYKKYDLRKGFKNFLIND-EGVIIAAN---VTPEKLTEILK 141 (143)
T ss_dssp HHHHHTTGGGCCCEEEECT-TSBEEEES---CCHHHHHHHHT
T ss_pred HHHHHcCCCCCCcEEEECC-CCEEEEcc---CCHHHHHHHHH
Confidence 5678899999999999996 68887663 34555554443
No 164
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=97.28 E-value=0.00064 Score=60.64 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=65.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCC--------hh-------------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDT--------SE------------------- 228 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s--------~e------------------- 228 (445)
.+|++||++..++|..|.. .. +.+.++.+ ..+.++.++.+. .+
T Consensus 32 ~gk~vlv~F~a~~C~~C~~-~~------~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~ 104 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKG-SI------GELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDE 104 (188)
T ss_dssp CSSEEEEEEECSSCHHHHT-TH------HHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECS
T ss_pred CCCEEEEEEECCCCccHHH-HH------HHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECC
Confidence 4799999999999999987 32 34444433 237778777732 21
Q ss_pred HHHHHHHcCCCCCcEEEEEeCCCCceeEEEecC----------CChHHHHHHHHhhhhcC
Q 013325 229 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGG 278 (445)
Q Consensus 229 g~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~----------~~~~~~l~~L~~~~~~~ 278 (445)
...++..|++..+|+++||++ .|+++.+ |. .+++++...|...+...
T Consensus 105 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~--g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 105 TQEVAKAYRALRTPEVFLFDE-RRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp SSHHHHHTTCCEESEEEEECT-TCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred cchHHHHcCCCCCCeEEEECC-CCcEEEE--EecCCccccccccCHHHHHHHHHHHHcCC
Confidence 234677899999999999995 6888766 43 36788988888887654
No 165
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00076 Score=59.30 Aligned_cols=89 Identities=15% Similarity=0.208 Sum_probs=62.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecC--------Chh-HHHHH------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDD--------TSE-GKKVC------------ 233 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~--------s~e-g~~~~------------ 233 (445)
.+||+||++..+||..|.. + +.+.++. ..++.++.++.+ +.+ ...++
T Consensus 31 ~Gk~vll~F~a~wC~~C~~-~-------~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~ 102 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTPQ-Y-------KELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMK 102 (171)
T ss_dssp TTCEEEEEEEESSSCCHHH-H-------HHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBC
T ss_pred CCCEEEEEEEecCCCcchh-H-------HHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEe
Confidence 4799999999999998874 5 2333332 235888877653 211 12222
Q ss_pred ------------------HHcCCCCCc------EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 234 ------------------TYYKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 234 ------------------~~y~v~~~P------~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
..|++..+| +++|||+ .|+++.++.|..+++++...|...+.
T Consensus 103 d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (171)
T 3cmi_A 103 KIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLK 168 (171)
T ss_dssp CCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred eccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 236777889 9999996 69999999998899888888887765
No 166
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=97.27 E-value=0.00052 Score=61.51 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=67.7
Q ss_pred cCC-eEEEEEeCCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCC--------hh-----------------
Q 013325 179 QDK-WLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDT--------SE----------------- 228 (445)
Q Consensus 179 ~~K-~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s--------~e----------------- 228 (445)
.+| ++||++..++|..|.. .. +.+.++. ..++.++.++.+. .+
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~-~~------~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 116 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKH-VQ------HELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLY 116 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHH-HH------HHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCeEEEEEeCCCCccHHH-HH------HHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEE
Confidence 566 5999999999999987 43 3333333 2358888888742 21
Q ss_pred --HHHHHHHcCCCCCcEEEEEeCCCCceeEE---------EecCCChHHHHHHHHhhhhcC
Q 013325 229 --GKKVCTYYKLDSIPVVLVVDPITGQKMRS---------WCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 229 --g~~~~~~y~v~~~P~l~ii~p~tg~~~~~---------~~G~~~~~~~l~~L~~~~~~~ 278 (445)
...++..|++..+|+++|||+ +|+++.+ ..|..+.+++...|...+...
T Consensus 117 d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 117 DETQEVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp CSSCHHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CCchHHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 235677899999999999996 6988877 346678899999998888754
No 167
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.27 E-value=0.00087 Score=59.90 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=66.9
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHH---hh-ccEEEEEeecCChh-----------------------HH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQT---IS-TNFIFWQVYDDTSE-----------------------GK 230 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~---l~-~~FV~~~~~~~s~e-----------------------g~ 230 (445)
.+|++||++. .++|..|.. .. +.+.++ +. .++.++.++.++.+ ..
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~-~~------~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 102 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPT-EL------EDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQ 102 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTH-HH------HHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTC
T ss_pred CCCCEEEEEECCCCCcchHH-HH------HHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCch
Confidence 4799999999 999999987 32 333332 22 36888888887642 23
Q ss_pred HHHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhhh
Q 013325 231 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 276 (445)
Q Consensus 231 ~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~~ 276 (445)
.++..|++. .+|+++|||+ .|+++..+.|.. +++++++.|.....
T Consensus 103 ~~~~~~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 103 TISRQFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKAAQY 157 (187)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 467788887 8999999996 699999988864 67888888877654
No 168
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=97.23 E-value=0.00031 Score=50.86 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=40.4
Q ss_pred CChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 5 l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
|+..++ .+|.+|+.. ||...+-+..+|+.+|||++.|+..|-+.
T Consensus 2 l~~~q~-~mv~~~s~~-T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 2 LNPVQL-ELLNKLHLE-TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp CCHHHH-HHHHHHHHH-HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CCHHHH-HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 676674 599999999 99999999999999999999999999985
No 169
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.22 E-value=0.0008 Score=60.78 Aligned_cols=89 Identities=10% Similarity=0.098 Sum_probs=65.8
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHH----hhccEEEEEeecCChh-------------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQT----ISTNFIFWQVYDDTSE------------------------- 228 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~----l~~~FV~~~~~~~s~e------------------------- 228 (445)
.+|+++|++. .++|..|.. .. +.+.++ -..++.++.++.++.+
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~-~~------~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 104 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPT-EI------IAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVAD 104 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCT-HH------HHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEEC
T ss_pred CCCcEEEEEECCCCCCchHH-HH------HHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEEC
Confidence 5799999999 899999977 32 333332 2346888888887643
Q ss_pred -HHHHHHHcCCC-----CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 229 -GKKVCTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 229 -g~~~~~~y~v~-----~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
...+++.|++. .+|+++|||+ +|+++..+.|.. ++++++..|....
T Consensus 105 ~~~~~~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 105 ITKSISRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp TTSHHHHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 23577889988 8999999996 699999888865 5677777776654
No 170
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.22 E-value=0.002 Score=55.97 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=63.8
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh---h-ccEEEEEeecC--------Chh-HHHHHH-Hc--------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI---S-TNFIFWQVYDD--------TSE-GKKVCT-YY-------- 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~-~~FV~~~~~~~--------s~e-g~~~~~-~y-------- 236 (445)
.+||+||++..+||..|.. .. +.+.++. . .++.++.++.+ +.+ ...++. .|
T Consensus 31 ~gk~vll~f~a~~C~~C~~-~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNS-NY------AEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFD 103 (170)
T ss_dssp TTSEEEEEEECSSSTTHHH-HH------HHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBC
T ss_pred CCCEEEEEEEeccCCccHH-HH------HHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEe
Confidence 4799999999999999977 32 3333332 2 35888888764 222 233444 32
Q ss_pred ---------------------CC--CCCc---EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 237 ---------------------KL--DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 237 ---------------------~v--~~~P---~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++ ..+| +++||++ .|+++.++.|..+++++...|...+.
T Consensus 104 ~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (170)
T 2p5q_A 104 KIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE 168 (170)
T ss_dssp CCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred eeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence 23 4578 8999996 69999999998888888888877764
No 171
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.22 E-value=0.00059 Score=67.57 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=72.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..+|++.+ ...+|++||+++.+||..|+. +... | ..+.+.+.. ++++..+|.+..+ +..|++..||+
T Consensus 256 ~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~-~~p~-~--~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~Pt 324 (361)
T 3uem_A 256 GKNFEDVA---FDEKKNVFVEFYAPWCGHCKQ-LAPI-W--DKLGETYKDHENIVIAKMDSTANE----VEAVKVHSFPT 324 (361)
T ss_dssp TTTHHHHH---TCTTCEEEEEEECTTCHHHHH-HHHH-H--HHHHHHTTTCSSEEEEEEETTTCB----CSSCCCCSSSE
T ss_pred cCchhhhc---ccCCCcEEEEEecCcCHhHHH-HHHH-H--HHHHHHhccCCcEEEEEEECCccc----hhhcCCcccCe
Confidence 44666654 457899999999999999998 6432 2 334444444 4888888887665 56899999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+.++....|+.+..+.|..+.+.|++.|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 355 (361)
T 3uem_A 325 LKFFPASADRTVIDYNGERTLDGFKKFLESG 355 (361)
T ss_dssp EEEECSSSSCCCEECCSCSSHHHHHHHHTTT
T ss_pred EEEEECCCCcceeEecCCCCHHHHHHHHHhc
Confidence 9999754456777889998988887655543
No 172
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=97.20 E-value=0.0017 Score=64.88 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=75.2
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhccc----CChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTW----ANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLD 239 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~----~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~ 239 (445)
-..+|++++ +.++++||+++.+||..|. +|+.+- .-+.+...++. ++.+..++.+. ...+|..|+|.
T Consensus 19 t~~~f~~~i----~~~~~vlV~FyApWC~~~~--~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~--~~~l~~~~~V~ 90 (367)
T 3us3_A 19 NAKNYKNVF----KKYEVLALLYHEPPEDDKA--SQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGLT 90 (367)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECCCCSSHH--HHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--THHHHHHHTCC
T ss_pred CHHHHHHHH----hhCCeEEEEEECCCchhHH--HhhhhccccHHHHHHHHHhhcCCceEEEEeCcc--cHHHHHHcCCC
Confidence 456788877 3589999999999998874 454221 11344555554 58888887764 45799999999
Q ss_pred CCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 240 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 240 ~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.||++.++. .|+.+ ...|..+++.+++.|.+.+.
T Consensus 91 ~~PTl~~f~--~G~~~-~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 91 EEDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp STTEEEEEE--TTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred cCceEEEEE--CCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence 999999998 47764 67899999999988877654
No 173
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.19 E-value=0.00079 Score=58.19 Aligned_cols=85 Identities=11% Similarity=-0.029 Sum_probs=61.5
Q ss_pred CC-eEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChh---------------------HHHH
Q 013325 180 DK-WLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSE---------------------GKKV 232 (445)
Q Consensus 180 ~K-~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~e---------------------g~~~ 232 (445)
+| |++|++. .++|..|.. .. +.+.++.+ .++.++.++.++.+ ...+
T Consensus 35 gk~~vvl~F~~a~~C~~C~~-~~------~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 107 (160)
T 1xvw_A 35 GAKNVLLVFFPLAFTGICQG-EL------DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAV 107 (160)
T ss_dssp TTCEEEEEECSCTTSSHHHH-HH------HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHH
T ss_pred CCCCEEEEEECCCCCCchHH-HH------HHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHH
Confidence 55 9999998 999999987 32 44444433 35888888887643 4567
Q ss_pred HHHcCCC----CCc--EEEEEeCCCCceeEEEecCCC----hHHHHHHHH
Q 013325 233 CTYYKLD----SIP--VVLVVDPITGQKMRSWCGMVQ----PESLLEDLV 272 (445)
Q Consensus 233 ~~~y~v~----~~P--~l~ii~p~tg~~~~~~~G~~~----~~~~l~~L~ 272 (445)
+..|++. .+| +++||++ .|+++..+.|..+ .++++..|.
T Consensus 108 ~~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~ 156 (160)
T 1xvw_A 108 SQAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGEVRDQRLWTDALA 156 (160)
T ss_dssp HHHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred HHHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 8889987 899 9999996 6999999888653 344554443
No 174
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.17 E-value=0.0015 Score=58.53 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh---h-ccEEEEEeecC--------Chh-HHHHH-HH---------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI---S-TNFIFWQVYDD--------TSE-GKKVC-TY--------- 235 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~-~~FV~~~~~~~--------s~e-g~~~~-~~--------- 235 (445)
.+||+||++..+||..|.. .. +.+.++. . .++.++.++.+ +.+ ...++ ..
T Consensus 47 ~Gk~vll~F~atwC~~C~~-~~------~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 119 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKG-GY------ETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMA 119 (190)
T ss_dssp TTSCEEEEEECSSSTTHHH-HH------HHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBC
T ss_pred CCCEEEEEEecCCCCccHH-HH------HHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEe
Confidence 4799999999999999966 32 3333332 2 35777777765 332 23344 22
Q ss_pred --------------------cCCCCCc------EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 236 --------------------YKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 236 --------------------y~v~~~P------~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
|++..+| +++||++ .|+++.++.|..+++++...|...+..
T Consensus 120 ~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 120 KINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES 186 (190)
T ss_dssp CCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred ecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3556678 8999996 699999999999999999988888763
No 175
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=97.14 E-value=0.00081 Score=69.33 Aligned_cols=100 Identities=11% Similarity=0.170 Sum_probs=75.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
..+|++++ ...+|++||+++.+||..|+. +...+ ..+.+.+.. ++++..++.+.. .++..|++..||+
T Consensus 359 ~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~-~~p~~---~~l~~~~~~~~~v~~~~id~~~~---~~~~~~~v~~~Pt 428 (481)
T 3f8u_A 359 AENFDEIV---NNENKDVLIEFYAPWCGHCKN-LEPKY---KELGEKLSKDPNIVIAKMDATAN---DVPSPYEVRGFPT 428 (481)
T ss_dssp TTTHHHHH---TCTTCEEEEEEECTTBHHHHH-HHHHH---HHHHHHTTTCSSEEEEEEETTSS---CCCTTCCCCSSSE
T ss_pred ccCHHHHh---hcCCCcEEEEEecCcChhHHH-hhHHH---HHHHHHhccCCCEEEEEEECCch---hhHhhCCCcccCE
Confidence 45676655 456999999999999999998 64432 344454544 699998888665 4667899999999
Q ss_pred EEEEeCCCCc-eeEEEecCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQ-KMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~-~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++++.. .|. .+..+.|..+.++|+..|.+...
T Consensus 429 ~~~~~~-~~~~~~~~~~G~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 429 IYFSPA-NKKLNPKKYEGGRELSDFISYLQREAT 461 (481)
T ss_dssp EEEECT-TCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred EEEEeC-CCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence 998874 444 26778899999999888877654
No 176
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.12 E-value=0.0027 Score=58.41 Aligned_cols=84 Identities=5% Similarity=0.028 Sum_probs=63.7
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeE
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 256 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~ 256 (445)
.+++++|++.++||..|+. +. +.+.++-. .++.+..++.+. ...++..|++..+|+++| +|+ +.
T Consensus 135 ~~~~~~v~F~a~wC~~C~~-~~------~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~----~G~-~~ 200 (229)
T 2ywm_A 135 DIPIEIWVFVTTSCGYCPS-AA------VMAWDFALANDYITSKVIDASE--NQDLAEQFQVVGVPKIVI----NKG-VA 200 (229)
T ss_dssp CSCEEEEEEECTTCTTHHH-HH------HHHHHHHHHCTTEEEEEEEGGG--CHHHHHHTTCCSSSEEEE----GGG-TE
T ss_pred CCCeEEEEEECCCCcchHH-HH------HHHHHHHHHCCCeEEEEEECCC--CHHHHHHcCCcccCEEEE----CCE-EE
Confidence 3455588999999999998 63 33344333 367777777643 456899999999999988 577 56
Q ss_pred EEecCCChHHHHHHHHhhhh
Q 013325 257 SWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 257 ~~~G~~~~~~~l~~L~~~~~ 276 (445)
++.|..+.++|.+.|...+.
T Consensus 201 ~~~G~~~~~~l~~~l~~~~~ 220 (229)
T 2ywm_A 201 EFVGAQPENAFLGYIMAVYE 220 (229)
T ss_dssp EEESCCCHHHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHHHHHHhh
Confidence 68999999999988887775
No 177
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.09 E-value=0.0026 Score=55.16 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=61.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh---h-ccEEEEEeecCC--------h-hHHHH-HHHc--------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI---S-TNFIFWQVYDDT--------S-EGKKV-CTYY-------- 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~-~~FV~~~~~~~s--------~-eg~~~-~~~y-------- 236 (445)
.+||+||++..+||..|.. .. +.+.++. . .++.++.++.+. . +...+ ...+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~-~~------~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDK-NY------RQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFS 102 (169)
T ss_dssp TTSEEEEEEECSSSTTHHH-HH------HHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBC
T ss_pred CCCEEEEEEeeccCCchHH-HH------HHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEE
Confidence 4799999999999999976 32 2333322 2 357777777642 1 22333 1222
Q ss_pred ---------------------C-----CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 237 ---------------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 237 ---------------------~-----v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+ +..+|+++||++ .|+++.++.|..+++++...|...+.
T Consensus 103 ~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 103 KIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp CCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred EEeecCccccHHHHHHHhhcCCccCCcccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence 2 334589999995 69999999998889888888877765
No 178
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=96.98 E-value=0.0024 Score=57.22 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=65.1
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHH----HhhccEEEEEeecCChhH------------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQ----TISTNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~----~l~~~FV~~~~~~~s~eg------------------------ 229 (445)
.+||+||++. .++|..|.. .. +.+.+ |-..++.++.++.++.+.
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~-~~------~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D 102 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPS-EI------IALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISD 102 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCH-HH------HHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEEC
T ss_pred CCCeEEEEEECCCCCCCCHH-HH------HHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEEC
Confidence 5799999999 999999987 32 33333 223568888888876442
Q ss_pred --HHHHHHcCCC-----CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 230 --KKVCTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 230 --~~~~~~y~v~-----~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
..++..|++. .+|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 103 ~~~~~~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 103 ISKSIARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp TTSHHHHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred CcHHHHHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3577889988 8999999996 699988887743 4677777776554
No 179
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=96.98 E-value=0.0024 Score=58.94 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=66.1
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh--------------------------HHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------------GKK 231 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e--------------------------g~~ 231 (445)
.+||+||++. .++|..|.. ....+ ..-..+|-..++.++.++.++.+ ...
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~-~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~ 131 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPT-EIIAF--SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQ 131 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHH-HHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSH
T ss_pred CCCeEEEEEECCCCCCCCHH-HHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHH
Confidence 4699999999 999999987 32211 11112222347888888887643 135
Q ss_pred HHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhhh
Q 013325 232 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 276 (445)
Q Consensus 232 ~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~~ 276 (445)
+++.|++. .+|+++|||+ .|.++..+.|.. +.++++..|.....
T Consensus 132 i~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 132 ISRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQF 185 (220)
T ss_dssp HHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 77888887 8999999996 699888887753 45788877776653
No 180
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.98 E-value=0.0023 Score=52.35 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=58.7
Q ss_pred CCCCCCCCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-
Q 013325 358 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA- 436 (445)
Q Consensus 358 ~EP~~~~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~- 436 (445)
+||........+|.||..+|+.+.-.+..++||..|..-|... .+......+|+.. ++. | +.++||.++|+.
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~ 86 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-EGVEPGSQRWFFS--GRP--L--TDKMKFEELKIPK 86 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-TCCCSTTCEEEET--TEE--C--CTTSHHHHCCCSS
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-HCcCcccEEEEEC--CEE--C--CCCCcHHHcCCCC
Confidence 5666556677899999999999999999999999999999875 4666677778753 443 4 457999999998
Q ss_pred CceEEEEe
Q 013325 437 NAMISVTW 444 (445)
Q Consensus 437 ~~~v~v~~ 444 (445)
+++|.+..
T Consensus 87 g~ti~lv~ 94 (106)
T 1ttn_A 87 DYVVQVIV 94 (106)
T ss_dssp SCEEEEEC
T ss_pred CCEEEEEE
Confidence 56676653
No 181
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=96.97 E-value=0.0055 Score=56.05 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=67.0
Q ss_pred cCCeEEEEEeCC-CCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee-E
Q 013325 179 QDKWLLVNLQST-KEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-R 256 (445)
Q Consensus 179 ~~K~LlV~l~~~-~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~-~ 256 (445)
+++.+||+++++ ||..|+. +.. +| +++.+. ..++.+..++.+.++...++..|++..+|++.|+. .|+.. .
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~-~~~-~~--~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~ 93 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQ-LKQ-LV--QELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ--DGKDFGV 93 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHH-HHH-HH--HHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE--TTBCCSE
T ss_pred CCCeEEEEEecCCCCchhHH-HHH-HH--HHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc--CCceeeE
Confidence 456678999999 9999998 532 22 123322 35788888899887788999999999999999995 46543 6
Q ss_pred EEecCCChHHHHHHHHhhhh
Q 013325 257 SWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 257 ~~~G~~~~~~~l~~L~~~~~ 276 (445)
++.|..+.+.+...+...+.
T Consensus 94 ~~~G~~~~~~l~~~l~~~l~ 113 (226)
T 1a8l_A 94 RYFGLPAGHEFAAFLEDIVD 113 (226)
T ss_dssp EEESCCCTTHHHHHHHHHHH
T ss_pred EEeccCcHHHHHHHHHHHHh
Confidence 77898777777666666553
No 182
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=96.96 E-value=0.0034 Score=56.61 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=65.1
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHh-hccEEEEEeecCChhH--------------------------H
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG--------------------------K 230 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l-~~~FV~~~~~~~s~eg--------------------------~ 230 (445)
.+||+||++. .++|..|.. ....+ ..+.+-+ ..++.++.++.++.+. .
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~-~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 108 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPT-EIIAF---SNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTR 108 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHH-HHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCCCHH-HHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcH
Confidence 4799999999 999999987 42211 1222222 2468888888876531 3
Q ss_pred HHHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 231 KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 231 ~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
.++..|++. .+|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 109 ~~~~~~gv~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~e~l~~l~~l~ 162 (197)
T 1qmv_A 109 RLSEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAFQ 162 (197)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCccCCCCceeeEEEEECC-CCcEEEEEeCCCCCCCCHHHHHHHHHhcc
Confidence 577788887 7999999996 699888888754 4577777766554
No 183
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=96.95 E-value=0.0029 Score=57.36 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=65.2
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHH---h-hccEEEEEeecCChhH------------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQT---I-STNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~---l-~~~FV~~~~~~~s~eg------------------------ 229 (445)
.+||+||++. .++|..|.. .. +.+.++ + ..++.++.++.++.+.
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~-~~------~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D 107 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPT-EI------CQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILAD 107 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHH-HH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEEC
T ss_pred CCCeEEEEEECCCCCCcCHH-HH------HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEEC
Confidence 4799999999 999999987 32 333332 2 2468888888876432
Q ss_pred --HHHHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 230 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 230 --~~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
..+++.|++. .+|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 108 ~~~~~~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 108 KTKCIMKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp TTCHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred CchHHHHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 3467778887 8999999996 699888887753 4578887777655
No 184
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=96.94 E-value=0.00076 Score=52.49 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=56.1
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
..|+||-|+|..... ...++++.+|++.|...+ +.....|.|...||++. .+....+.||+++||. +++|.|
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~-~i~~~~~~l~~~~~p~~-~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEF-GFQNNGFSVYINRNKTG-EITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHT-CCCTTTCCCCCSCCGGG-GSSSCCCCTTTTTCCCTTCCEEC
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHc-CCCCCcceEEecCCCCC-cccCCCCCCHHHcCCCCCCEEEE
Confidence 569999999975444 778899999999999875 34557888999999842 2434578999999997 566665
No 185
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.94 E-value=0.001 Score=46.68 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=38.0
Q ss_pred ChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 6 SANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 6 ~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
+...-++.|++.+++ |-+.+.|+..|.+++||++.|++..|++
T Consensus 4 ~~~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 4 TGSEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp CSHHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 344456799999999 8999999999999999999999999884
No 186
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.91 E-value=0.00083 Score=73.70 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii 247 (445)
+|++++ +.++++||+++++||..|+. |... | +.+.+.+...+.+..++.+.. ..++..|++..||++.++
T Consensus 125 ~f~~~i----~~~~~~lv~Fya~wC~~C~~-~~p~-~--~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~ 194 (780)
T 3apo_A 125 EFDAAV----NSGELWFVNFYSPGSSHSHD-LAPT-W--REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIF 194 (780)
T ss_dssp HHHHHH----TSSSCEEEEEECSSCHHHHH-HHHH-H--HHHHHHTTTTSEEEEEETTTC--SSCC--------CEEEEE
T ss_pred hHHhhh----cCCCcEEEEEeCCCCcchhH-hhHH-H--HHHHHHhcCceEEEEEeCCCc--HHHHHHcCCceeeeEEEE
Confidence 555555 78999999999999999999 7543 3 455556666788888777543 468889999999999888
Q ss_pred eCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 248 DPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
. .|+.+..+.|..+++.+.+.|...+.
T Consensus 195 ~--~g~~~~~~~G~~~~~~l~~~l~~~~~ 221 (780)
T 3apo_A 195 R--SGMAAVKYNGDRSKESLVAFAMQHVR 221 (780)
T ss_dssp C--TTSCCEECCSCSCHHHHHHHHHTTSC
T ss_pred e--CCcEeeEecCCCCHHHHHHHHHHhch
Confidence 4 58777888998898888887776654
No 187
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=96.88 E-value=0.0043 Score=56.16 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=63.7
Q ss_pred cCCeEEEEEeCCCCcc-hhhhhhhcccCChhHHH---Hhh----ccEEEEEeecC----Chh------------------
Q 013325 179 QDKWLLVNLQSTKEFS-SHMVLNRDTWANEAVSQ---TIS----TNFIFWQVYDD----TSE------------------ 228 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~-~~~~~~rdv~~~~~V~~---~l~----~~FV~~~~~~~----s~e------------------ 228 (445)
.+||+||++..++|.+ |.. .. +.+.+ -+. .++.++.++.+ +++
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~-~~------~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~ 112 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPD-EL------DKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTG 112 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHH-HH------HHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEEC
T ss_pred CCCEEEEEEECCCCcchhHH-HH------HHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeC
Confidence 4799999999999997 976 32 22333 222 25666666665 222
Q ss_pred ----HHHHHHHcCCC-CC---------------cEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 229 ----GKKVCTYYKLD-SI---------------PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 229 ----g~~~~~~y~v~-~~---------------P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
...+++.|++. .. |+++|||+ .|+++..+.|..+++.+...|...+...
T Consensus 113 ~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 113 TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp CHHHHHHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 24567778775 33 37899996 6999999989888889999998888754
No 188
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=96.87 E-value=0.00095 Score=46.40 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
++.|++.+++ |-+...|++.|.+||||++.|++..|++..
T Consensus 5 ~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 5 KEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp HHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 4589999999 999999999999999999999999998654
No 189
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=96.86 E-value=0.0044 Score=54.96 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=58.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh---h-ccEEEEEeecC--------Ch-hHHHHHHHc---------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI---S-TNFIFWQVYDD--------TS-EGKKVCTYY--------- 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~-~~FV~~~~~~~--------s~-eg~~~~~~y--------- 236 (445)
.+||+||++..+||..|.. .. +.+.++. . .++.++.++.+ +. +...++..|
T Consensus 46 ~gk~vll~F~atwC~~C~~-~~------~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~ 118 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEV-NY------TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSK 118 (183)
T ss_dssp TTSEEEEEEECSSSTTHHH-HH------HHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCC
T ss_pred CCCEEEEEEeCCCCCCcHH-HH------HHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEee
Confidence 4799999999999999976 32 3333332 2 35777777754 22 223333332
Q ss_pred ----------------------C-----CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 237 ----------------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 237 ----------------------~-----v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
+ +..+|+++|||+ .|+++.++.|..+++++...|...
T Consensus 119 ~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l 182 (183)
T 2obi_A 119 ICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY 182 (183)
T ss_dssp CCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSGGG
T ss_pred eccCCcchhHHHHHhhccCCCCCcccccccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHh
Confidence 2 223599999995 699999999988888776655543
No 190
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=96.85 E-value=0.0033 Score=53.05 Aligned_cols=89 Identities=11% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhHHHHHHHcCCCC--CcEEEEEeCCC
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPIT 251 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p~t 251 (445)
....++++|++..+ |.+|+. +. +.+.++-+ ..+.|..+|++ +...++..|++.+ +|+++|+....
T Consensus 20 ~~~~~pv~v~f~a~-~~~c~~-~~------p~l~~~A~~~~gk~~f~~vd~d--~~~~~a~~~gi~~~~iPtl~i~~~~~ 89 (133)
T 2djk_A 20 MSAGIPLAYIFAET-AEERKE-LS------DKLKPIAEAQRGVINFGTIDAK--AFGAHAGNLNLKTDKFPAFAIQEVAK 89 (133)
T ss_dssp HHTTSCEEEEECSC-SSSHHH-HH------HHHHHHHHSSTTTSEEEEECTT--TTGGGTTTTTCCSSSSSEEEEECTTT
T ss_pred hcCCCCEEEEEecC-hhhHHH-HH------HHHHHHHHHhCCeEEEEEEchH--HhHHHHHHcCCCcccCCEEEEEecCc
Confidence 35678999999988 788887 42 34444443 45777777765 3445888999998 99999998544
Q ss_pred CceeEEEe--cCCChHHHHHHHHhhhh
Q 013325 252 GQKMRSWC--GMVQPESLLEDLVPFMD 276 (445)
Q Consensus 252 g~~~~~~~--G~~~~~~~l~~L~~~~~ 276 (445)
|+.. .+. |..+.+.+...|..+++
T Consensus 90 g~~~-~~~~~g~~~~~~l~~fi~~~l~ 115 (133)
T 2djk_A 90 NQKF-PFDQEKEITFEAIKAFVDDFVA 115 (133)
T ss_dssp CCBC-CCCSSSCCCHHHHHHHHHHHHH
T ss_pred Cccc-CCCCccccCHHHHHHHHHHHHc
Confidence 6653 554 88999999888888886
No 191
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=96.85 E-value=0.0047 Score=56.73 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=65.3
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHH----hhccEEEEEeecCChhH------------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQT----ISTNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~----l~~~FV~~~~~~~s~eg------------------------ 229 (445)
.+||+||++. .++|+.|.. .. +.+.++ -..++.++.++.++.+.
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~-~~------~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D 123 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPS-EI------IALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSD 123 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHH-HH------HHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEEC
T ss_pred CCCeEEEEEEcCCCCCCCHH-HH------HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEEC
Confidence 4799999999 999999987 32 333332 23578888888876432
Q ss_pred --HHHHHHcCCC-----CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 230 --KKVCTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 230 --~~~~~~y~v~-----~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
..+++.|++. .+|.++|||+ .|+++..+.|.. +.++++..|....
T Consensus 124 ~~~~~~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 124 ITKSISKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp TTSHHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred CchHHHHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 3467788887 8999999996 699888877643 4788888777655
No 192
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.84 E-value=0.0039 Score=50.53 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCceEEEEECCC----CceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ce
Q 013325 365 SLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AM 439 (445)
Q Consensus 365 ~~~~~I~iRlP~----G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~ 439 (445)
.++++|+||+|+ |+.+.-....++||..|-.-|... .+.+.....|+.. .|. | +.+.||.+.|+.+ ++
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-~gip~~qQrLI~~--GKi--L--~D~~TL~~y~I~~gst 85 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-FGLQENYIKIVIN--KKQ--L--QLGKTLEEQGVAHNVK 85 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-TTCCSTTCEEEET--TEE--C--CTTSBHHHHTCCSSEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-HCcCHHHeEEEeC--CeE--C--CCCCcHHHcCCCCCCE
Confidence 479999999999 878999999999999999999886 4677788889854 664 4 5579999999985 55
Q ss_pred EEE
Q 013325 440 ISV 442 (445)
Q Consensus 440 v~v 442 (445)
|+|
T Consensus 86 i~v 88 (100)
T 1wju_A 86 AMV 88 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 193
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=96.84 E-value=0.0029 Score=56.56 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=62.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCC--------h-hHHHHHH-----------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDT--------S-EGKKVCT----------- 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s--------~-eg~~~~~----------- 234 (445)
.+|++||++..+||..|.. .. +.+.++.+ .++.++.++++. . +-..++.
T Consensus 45 ~Gk~vlv~F~atwC~~C~~-~~------p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~ 117 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKG-GY------ETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMA 117 (187)
T ss_dssp TTSCEEEEEECCBCSCCTT-HH------HHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBC
T ss_pred CCCEEEEEEecCCCCCcHH-HH------HHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceee
Confidence 5799999999999999987 32 33444332 357777776641 1 2222222
Q ss_pred ----------------------HcCCCCCc---EEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 235 ----------------------YYKLDSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 235 ----------------------~y~v~~~P---~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
.|++..+| +++|||+ .|.++.++.|..+++++...|...+..
T Consensus 118 ~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 118 KINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLGS 184 (187)
T ss_dssp CBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred ccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 12334567 9999996 699999999999999999888888763
No 194
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.84 E-value=0.0016 Score=49.53 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
++.|++.++| |-+.+.|+..|.+++||++.|++..|++.
T Consensus 30 ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 30 EEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 5689999999 89999999999999999999999999854
No 195
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.80 E-value=0.0024 Score=45.51 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=36.3
Q ss_pred hHHHHHHhhhccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 9 DKQSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 9 ~~~~~v~~F~~iTt~~-~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
.-++.|++.+++ |- +.+.|+..|.++|||++.||+..|+.+
T Consensus 10 ~~~~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 10 RFQQQLEQLNSM--GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 345689999999 66 999999999999999999999999854
No 196
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=96.79 E-value=0.0057 Score=54.16 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=64.1
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecC--------C-hhHHHHHHH-cCCC-----
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCTY-YKLD----- 239 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~--------s-~eg~~~~~~-y~v~----- 239 (445)
.+|++||++..+||..|.. . -+.+.++.+ .++.+++++.+ + .+...++.. |++.
T Consensus 37 ~Gk~vlv~F~atwC~~C~~-~------~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 109 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDR-N------YLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFH 109 (180)
T ss_dssp TTSEEEEEEECSSSTTHHH-H------HHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBC
T ss_pred CCCEEEEEEEecCCCCcHH-H------HHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceee
Confidence 5799999999999999987 3 233444333 35888888754 2 233556665 4431
Q ss_pred ---------------------CCcE----EEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 240 ---------------------SIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 240 ---------------------~~P~----l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.+|. .+||++ .|+++.++.|..+++.+...|...+.
T Consensus 110 ~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~ 170 (180)
T 3kij_A 110 KIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVR 170 (180)
T ss_dssp CCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECT-TSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred eeeccCccccHHHHHHHhcCCCCccccceEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 2566 889996 69999999999888887777777765
No 197
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.76 E-value=0.0022 Score=43.56 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=34.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
++.|++.+++ |-+.+.|+..|..+|||++.|++..|++
T Consensus 5 e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4589999999 8999999999999999999999998864
No 198
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=96.74 E-value=0.0059 Score=55.86 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=62.4
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecC--------C-hhHHHHHH------HcCC-
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCT------YYKL- 238 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~--------s-~eg~~~~~------~y~v- 238 (445)
.+|++|||+..+||.+|.. . -+.+.++.+ ..+.+++++.+ + .+...++. .|++
T Consensus 46 ~Gk~vlv~FwatwC~~C~~-e------~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~ 118 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVR-D------YTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPN 118 (208)
T ss_dssp TTSEEEEEEECSSSTTHHH-H------HHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCS
T ss_pred CCCEEEEEEECCCCccHHH-H------HHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccc
Confidence 5799999999999999976 2 233444332 35888888765 2 22344443 3322
Q ss_pred ----------------------------------------------------CCCcEEEEEeCCCCceeEEEecCCChHH
Q 013325 239 ----------------------------------------------------DSIPVVLVVDPITGQKMRSWCGMVQPES 266 (445)
Q Consensus 239 ----------------------------------------------------~~~P~l~ii~p~tg~~~~~~~G~~~~~~ 266 (445)
...|+.+|||+ .|+++.++.|..++++
T Consensus 119 fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~-~G~i~~~~~g~~~~~~ 197 (208)
T 2f8a_A 119 FMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP-DGVPLRRYSRRFQTID 197 (208)
T ss_dssp SEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCGGG
T ss_pred eEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC-CCcEEEEeCCCCCHHH
Confidence 22388999995 7999999999988888
Q ss_pred HHHHHHhhhh
Q 013325 267 LLEDLVPFMD 276 (445)
Q Consensus 267 ~l~~L~~~~~ 276 (445)
+...|...+.
T Consensus 198 l~~~I~~ll~ 207 (208)
T 2f8a_A 198 IEPDIEALLS 207 (208)
T ss_dssp GHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 8887776653
No 199
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.73 E-value=0.004 Score=46.04 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=37.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
++.|++.+++ |-+.+.|+..|.+|+||++.|++..|+....
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 4589999999 9999999999999999999999999986543
No 200
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.72 E-value=0.0038 Score=68.39 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=80.6
Q ss_pred HHhhcCCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHH
Q 013325 153 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV 232 (445)
Q Consensus 153 l~~~f~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~ 232 (445)
|...+.|+. +..-+-++........+|+++|+++.+||..|+. +...+ ..+.+-.+.++.+..++.+. ...+
T Consensus 650 fi~~~~~~~--v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~-~~p~~---~~la~~~~~~~~~~~vd~~~--~~~~ 721 (780)
T 3apo_A 650 WGLGFLPQA--SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQN-FAPEF---ELLARMIKGKVRAGKVDCQA--YPQT 721 (780)
T ss_dssp HHHTTSCCC--SEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHH-HHHHH---HHHHHHHTTTCEEEEEETTT--CHHH
T ss_pred HHhhhcccc--cccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHH-HHHHH---HHHHHHhcCCceEEEEECCC--CHHH
Confidence 334444443 2223444444445577999999999999999998 64332 34445555678888777754 4468
Q ss_pred HHHcCCCCCcEEEEEeCCCCceeEEEec----CCChHHHHHHHHhhhhcC
Q 013325 233 CTYYKLDSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 233 ~~~y~v~~~P~l~ii~p~tg~~~~~~~G----~~~~~~~l~~L~~~~~~~ 278 (445)
+..|++..+|+++|+. .|+.+.++.| ..+.++|...|.+.+...
T Consensus 722 ~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 722 CQKAGIKAYPSVKLYQ--YERAKKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp HHHTTCCSSSEEEEEE--EETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred HHhcCCCcCCEEEEEc--CCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 8999999999999993 5776666666 478999999988887643
No 201
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=96.68 E-value=0.0074 Score=52.52 Aligned_cols=39 Identities=13% Similarity=0.326 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEeCCCCceeEEEecCC--ChHHHHHHHHhhhh
Q 013325 237 KLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD 276 (445)
Q Consensus 237 ~v~~~P~l~ii~p~tg~~~~~~~G~~--~~~~~l~~L~~~~~ 276 (445)
.+...|+++|||+ .|+++.++.|.. +++++++.|...+.
T Consensus 132 ~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 132 QVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp SCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred eeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 4556899999996 699999999975 57888888887664
No 202
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=96.67 E-value=0.00072 Score=67.59 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=36.7
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
++++.+|-+| |++|+..|..||+.++|+|+.|++.||+.
T Consensus 46 ~~~~~~f~~~-~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 46 EQKLHEFAII-TATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHH-HTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 4588999999 99999999999999999999999999975
No 203
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.58 E-value=0.0032 Score=44.72 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHhhhccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~-~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
++.|.+.+++ |- +.+.|+..|.+++||++.||+..|++
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 5689999999 67 99999999999999999999998874
No 204
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=96.58 E-value=0.0054 Score=56.35 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=65.6
Q ss_pred cCCe-EEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCC--------hh-----------------
Q 013325 179 QDKW-LLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDT--------SE----------------- 228 (445)
Q Consensus 179 ~~K~-LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s--------~e----------------- 228 (445)
.+|+ +||++..++|..|.. . -+.+.++.+ .++.++.++.+. .+
T Consensus 57 ~gk~~vll~F~a~~C~~C~~-~------~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 129 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVL-I------REALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLK 129 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHT-T------HHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCeEEEEEECCCCccHHH-H------HHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEE
Confidence 4675 999999999999987 3 244444433 348888888842 11
Q ss_pred --HHHHHHHcCCCCCcEEEEEeCCCCceeEEEe---------cCCChHHHHHHHHhhhhcCC
Q 013325 229 --GKKVCTYYKLDSIPVVLVVDPITGQKMRSWC---------GMVQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 229 --g~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~---------G~~~~~~~l~~L~~~~~~~~ 279 (445)
...++..|++..+|+++|||+ .|+++.+.. |..+.+++...|...+....
T Consensus 130 D~~~~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~ 190 (218)
T 3u5r_E 130 DASQSVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD 190 (218)
T ss_dssp CTTCHHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred CCccHHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence 245778899999999999996 688775421 23457888888888876543
No 205
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=96.57 E-value=0.012 Score=52.81 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=71.0
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeC-------CCCcchhhhhhhcccCChhHHHHhh-----ccEEEEEeecCChhHHHH
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQS-------TKEFSSHMVLNRDTWANEAVSQTIS-----TNFIFWQVYDDTSEGKKV 232 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~-------~~~f~~~~~~~rdv~~~~~V~~~l~-----~~FV~~~~~~~s~eg~~~ 232 (445)
-..+|++.+. ...+.++||.+.. .||..|+. |.. +| +.|.+-.. .+.+|..+|++ +...+
T Consensus 24 t~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~-l~P-~~--e~lA~~~~~~~~~~~v~f~kvD~d--~~~~l 95 (178)
T 3ga4_A 24 TADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHD-FEK-TY--HAVADVIRSQAPQSLNLFFTVDVN--EVPQL 95 (178)
T ss_dssp CTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHH-HHH-HH--HHHHHHHHHHCTTCCEEEEEEETT--TCHHH
T ss_pred CHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHH-HHH-HH--HHHHHHhhhccCCCCEEEEEEECc--cCHHH
Confidence 4567886543 2356799999988 49999998 632 11 23333333 56788877775 57889
Q ss_pred HHHcCCCCCcEEEEEeCCCCce----------eEEE---ec-CCChHHHHHHHHhhhh
Q 013325 233 CTYYKLDSIPVVLVVDPITGQK----------MRSW---CG-MVQPESLLEDLVPFMD 276 (445)
Q Consensus 233 ~~~y~v~~~P~l~ii~p~tg~~----------~~~~---~G-~~~~~~~l~~L~~~~~ 276 (445)
+..|+|.++|+|+++.+-.+.. -..+ .| ..+++.|.+.|.+-+.
T Consensus 96 a~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~ 153 (178)
T 3ga4_A 96 VKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN 153 (178)
T ss_dssp HHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence 9999999999999999754322 1222 24 5688888877776655
No 206
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=96.56 E-value=0.0042 Score=55.13 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=62.2
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecC--------Chh-HHHHHHH-cC-------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDD--------TSE-GKKVCTY-YK------- 237 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~--------s~e-g~~~~~~-y~------- 237 (445)
.+|++||++..+||..|.. .. +.+.++. ..++.++.++.+ +.+ ...++.. ++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~-~~------p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~ 120 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQ-HY------RALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFS 120 (181)
T ss_dssp TTSEEEEEEECSSSTTHHH-HH------HHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBC
T ss_pred CCCEEEEEEeccCCCCcHH-HH------HHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEe
Confidence 4799999999999999986 32 3333333 235888888765 222 2344444 22
Q ss_pred ----------------CCCCc-------EEEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 238 ----------------LDSIP-------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 238 ----------------v~~~P-------~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
+..+| +.+|||+ .|+++.++.|..+++++...|.+.+
T Consensus 121 ~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 121 KIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAP-DGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp CCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred ecccCCccchhhhhhhhhcCCCccccceeEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 22467 8999995 6999999999889998888777654
No 207
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.54 E-value=0.0026 Score=49.55 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=37.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
++.|++.+++ |-+.+.|+..|.+++||++.|++..|++.+
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4689999999 999999999999999999999999999655
No 208
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=96.53 E-value=0.0072 Score=53.81 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=58.9
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCC--------h-hHHHHHHHcCC-------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDT--------S-EGKKVCTYYKL------- 238 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s--------~-eg~~~~~~y~v------- 238 (445)
.+||+||++..+||..|.. .. +.+.++. ..++.++.++.+. . +...++..|++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~-~~------~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 120 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEV-NY------TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSK 120 (185)
T ss_dssp TTSEEEEEEECSSSTTHHH-HH------HHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCC
T ss_pred CCCEEEEEEecCCCCchHH-HH------HHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeee
Confidence 5799999999999999976 32 3333332 2357777777542 2 23444444332
Q ss_pred -----------------------------CCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhh
Q 013325 239 -----------------------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 239 -----------------------------~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~ 274 (445)
..+|+++||++ .|+++.++.|..+++++...|.+.
T Consensus 121 ~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 121 ICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp CBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT-TSCEEEEECTTSCGGGGGGGHHHH
T ss_pred eccCChhhhHHHHHHHhhcccccccCCcccccceEEEECC-CCCEEEeeCCCCCHHHHHHHHHHh
Confidence 12489999996 699999999988887776666543
No 209
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=96.51 E-value=0.0023 Score=66.46 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg~~~~~~y~v~~~P~ 243 (445)
.+|++.+ ...+|++||+++.+||..|+. +...+ ..+.+.+. .++++..++.+..+. .. |++..||+
T Consensus 366 ~~f~~~v---~~~~k~vlv~F~a~wC~~C~~-~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~---~~-~~v~~~Pt 434 (504)
T 2b5e_A 366 KNHDEIV---NDPKKDVLVLYYAPWCGHCKR-LAPTY---QELADTYANATSDVLIAKLDHTENDV---RG-VVIEGYPT 434 (504)
T ss_dssp TTHHHHH---HCTTCCEEEEEECTTCHHHHH-HHHHH---HHHHHHHHHHCSSCEEEEEEGGGCCC---SS-CCCSSSSE
T ss_pred ccHHHhh---ccCCCCEEEEEECCCChhHHH-HhHHH---HHHHHHhhccCCcEEEEEecCCcccc---cc-CCceecCe
Confidence 4566554 557899999999999999999 64432 23333333 379999888765442 23 99999999
Q ss_pred EEEEeCCCCce--eEEEecCCChHHHHHHHHhhhh
Q 013325 244 VLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 244 l~ii~p~tg~~--~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
++++. .|+. +..+.|..+.+.|+..|.+.+.
T Consensus 435 ~~~~~--~G~~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 435 IVLYP--GGKKSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp EEEEC--CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred EEEEe--CCceecceEecCCCCHHHHHHHHHhcCC
Confidence 99993 5654 5667898899988888777644
No 210
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=96.50 E-value=0.013 Score=54.89 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=64.4
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCce
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 254 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~ 254 (445)
.++..+|++..+||..|.. +.. +| ..+..... .++.+..++.+. ...++..|++.++|++.| +|+.
T Consensus 137 ~~~~~vv~F~a~wC~~C~~-~~p-~l--~~la~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~V~~vPt~~i----~G~~ 206 (243)
T 2hls_A 137 KGRVHIETIITPSCPYCPY-AVL-LA--HMFAYEAWKQGNPVILSEAVEAYE--NPDIADKYGVMSVPSIAI----NGYL 206 (243)
T ss_dssp CSCEEEEEEECSSCSSHHH-HHH-HH--HHHHHHHHHTTCCCEEEEEEETTT--CHHHHHHTTCCSSSEEEE----TTEE
T ss_pred CCCcEEEEEECCCCCCcHH-HHH-HH--HHHHHHcccccCCcEEEEEEECcc--CHHHHHHcCCeeeCeEEE----CCEE
Confidence 4677889999999999998 532 22 11222221 467777777654 346788999999999988 5775
Q ss_pred eEEEecCCChHHHHHHHHhhhhcC
Q 013325 255 MRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 255 ~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+ +.|..+.++|+..|.+.+..+
T Consensus 207 ~--~~G~~~~~~l~~~l~~~~~~~ 228 (243)
T 2hls_A 207 V--FVGVPYEEDFLDYVKSAAEGR 228 (243)
T ss_dssp E--EESCCCHHHHHHHHHHHHTTC
T ss_pred E--EeCCCCHHHHHHHHHHHhhcc
Confidence 4 789999999999998888754
No 211
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.48 E-value=0.0037 Score=44.75 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=35.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
++.|++.+++ +=.+...+++.|.++|||++.||+..|+.++
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5589999999 4336777899999999999999999998754
No 212
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=96.47 E-value=0.0045 Score=63.83 Aligned_cols=93 Identities=8% Similarity=0.027 Sum_probs=63.0
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--------ccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--------TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 249 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--------~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p 249 (445)
..+|++||+++.+||..|+. +...+ ..+.+.+. ..+.|..++.+. ...++..|+|..||+++|+.+
T Consensus 40 ~~~k~VlV~FyA~WC~pCk~-~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~--~~~la~~y~V~~~PTlilf~~ 113 (470)
T 3qcp_A 40 APLCPWIVLFYNDGCGACRR-YASTF---SKFAGGLKVEHGKDALQIATAAAVNCAS--EVDLCRKYDINFVPRLFFFYP 113 (470)
T ss_dssp GGGSCEEEEEECTTCHHHHH-HHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTT--CHHHHHHTTCCSSCEEEEEEE
T ss_pred CCCCeEEEEEECCCCHHHHH-HHHHH---HHHHHHHhhhcccccCceEEEEEEECCC--CHHHHHHcCCCccCeEEEEEC
Confidence 45689999999999999999 64322 23333333 148888888764 367899999999999999986
Q ss_pred CCCcee------------EEEecCCChHHHHHHHHhhhh
Q 013325 250 ITGQKM------------RSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 250 ~tg~~~------------~~~~G~~~~~~~l~~L~~~~~ 276 (445)
..+... .-+...++.+++...+...+.
T Consensus 114 gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Lin 152 (470)
T 3qcp_A 114 RDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVN 152 (470)
T ss_dssp SSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHH
T ss_pred CCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 543222 122234667776666655553
No 213
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.46 E-value=0.0046 Score=42.66 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=33.6
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
++.|++.+++ +-.+...++..|.+++||++.||+..|+
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5689999999 4457888999999999999999999886
No 214
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=96.41 E-value=0.013 Score=51.41 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=38.2
Q ss_pred hHHHHHHHcCC---------CCCcEEEEEeCCCCceeEEEecC-CChHHHHHHHHhhhhcCC
Q 013325 228 EGKKVCTYYKL---------DSIPVVLVVDPITGQKMRSWCGM-VQPESLLEDLVPFMDGGP 279 (445)
Q Consensus 228 eg~~~~~~y~v---------~~~P~l~ii~p~tg~~~~~~~G~-~~~~~~l~~L~~~~~~~~ 279 (445)
+...+++.|++ ...|.++|||+ .|+++..+.|. .++++++..|.++.....
T Consensus 105 ~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~ 165 (170)
T 3me7_A 105 DLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEGH 165 (170)
T ss_dssp HHHHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhcccc
Confidence 34556666553 34688999997 69999888995 689999999888876543
No 215
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=96.41 E-value=0.0047 Score=57.04 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=61.1
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhH------------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg------------------------ 229 (445)
.+|++||++. +++|..|.. .. +.+.++.+ .++.++.++.++.+.
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~-~~------p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D 140 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPT-EI------IAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLAD 140 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHH-HH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEEC
T ss_pred CCCeEEEEEECCCCCCchHH-HH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeC
Confidence 5799999999 599999987 32 44444332 358888888887542
Q ss_pred --HHHHHHcCCC------CCcEEEEEeCCCCceeEEEecCCC----hHHHHHHHH
Q 013325 230 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMVQ----PESLLEDLV 272 (445)
Q Consensus 230 --~~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~~----~~~~l~~L~ 272 (445)
..++..|++. .+|+++|||+ .|.++..+.|..+ .+++++.|.
T Consensus 141 ~~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~ 194 (222)
T 3ztl_A 141 RKQEISKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD 194 (222)
T ss_dssp SSSHHHHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred CchHHHHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 2456678886 7999999996 6999888877543 455555554
No 216
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.40 E-value=0.024 Score=44.63 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=58.1
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+...+|.||..+|+.+.-++..++||.+|..-|.... +......+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhhEEEEEC--CeE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 4578999999999999999999999999999998864 556667778763 332 4 457999999998 5667665
Q ss_pred e
Q 013325 444 W 444 (445)
Q Consensus 444 ~ 444 (445)
.
T Consensus 88 ~ 88 (91)
T 3v6c_B 88 L 88 (91)
T ss_dssp C
T ss_pred E
Confidence 3
No 217
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=96.40 E-value=0.006 Score=54.05 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=53.9
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhHHHHHHHcC---CCCCcEEEEEeCCCC
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYK---LDSIPVVLVVDPITG 252 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg~~~~~~y~---v~~~P~l~ii~p~tg 252 (445)
-.+|+++|++..+||.+|.. + .|.+.++.. .++.+..++.+ +...++..|. +.++|+++|++. .|
T Consensus 52 ~~~k~vvv~F~A~WC~pC~~-~------~P~l~~l~~~~~~v~~~~v~~d--~~~~~~~~~~~~~v~~iPt~i~~~~-~G 121 (167)
T 1z6n_A 52 IERRYRLLVAGEMWCPDCQI-N------LAALDFAQRLQPNIELAIISKG--RAEDDLRQRLALERIAIPLVLVLDE-EF 121 (167)
T ss_dssp CCSCEEEEEECCTTCHHHHH-H------HHHHHHHHHHCTTEEEEEECHH--HHHHHTTTTTTCSSCCSSEEEEECT-TC
T ss_pred hCCCEEEEEEECCCChhHHH-H------HHHHHHHHHHCCCcEEEEEECC--CCHHHHHHHHHcCCCCcCeEEEECC-CC
Confidence 35799999999999999998 4 344444433 25677766654 4556777786 899999999995 57
Q ss_pred ceeEEEec
Q 013325 253 QKMRSWCG 260 (445)
Q Consensus 253 ~~~~~~~G 260 (445)
+++.++-|
T Consensus 122 ~~~~~~g~ 129 (167)
T 1z6n_A 122 NLLGRFVE 129 (167)
T ss_dssp CEEEEEES
T ss_pred CEEEEEcC
Confidence 88887743
No 218
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.38 E-value=0.019 Score=43.04 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=54.5
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+|.||.++|+.+.-.+..++||..|..-+.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998764 556677888753 443 4 457899999998 5666654
No 219
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.35 E-value=0.0041 Score=45.04 Aligned_cols=48 Identities=13% Similarity=0.366 Sum_probs=42.1
Q ss_pred CCCChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 3 ~~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
+.||..+.+ .|++.+++ |-+.+.|+.-|+++|.|||.|++=.|++.+.
T Consensus 13 ~~ls~se~e-~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 13 QMLSPSERQ-CVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HTCCHHHHH-HHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HhhCcchHH-HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 357777744 89999999 8999999999999999999999999997653
No 220
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=96.35 E-value=0.019 Score=49.76 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=62.7
Q ss_pred cCCeEEEEEeCCC-CcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChh---------------------HHHHHH
Q 013325 179 QDKWLLVNLQSTK-EFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE---------------------GKKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~~~-~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~e---------------------g~~~~~ 234 (445)
.+||++|++..++ |..|.. . -+.+.++.+ .++.++.++.++++ ...++.
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~-~------~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 115 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDA-Q------TRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGE 115 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHH-T------HHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHH
T ss_pred CCCeEEEEEecCCCCCchHH-H------HHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHH
Confidence 4789999999998 998877 3 233333332 56667767766532 345777
Q ss_pred HcCCCC------CcEEEEEeCCCCceeEEEecC-----CChHHHHHHHHhhh
Q 013325 235 YYKLDS------IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFM 275 (445)
Q Consensus 235 ~y~v~~------~P~l~ii~p~tg~~~~~~~G~-----~~~~~~l~~L~~~~ 275 (445)
.|++.. +|+++|||+ .|.++..+.|. .+.+++++.|.+.+
T Consensus 116 ~~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 116 AFGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp HTTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred HhCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 888864 499999996 69999888763 24578888887654
No 221
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=96.34 E-value=0.018 Score=54.19 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=70.5
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeC--CCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCC---hhHHHHHHHcC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQS--TKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDT---SEGKKVCTYYK 237 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~--~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s---~eg~~~~~~y~ 237 (445)
-..+|++.+ ..++++||+++. +||.-... | +.+...+. .+++|..+|++. .+...++..|+
T Consensus 11 t~~nF~~~i----~~~~~vlV~FyA~~pWCgl~P~------~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~ 78 (240)
T 2qc7_A 11 DTVTFYKVI----PKSKFVLVKFDTQYPYGEKQDE------F--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK 78 (240)
T ss_dssp CTTHHHHHG----GGCSEEEEEECCSSCCSHHHHH------H--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT
T ss_pred CHHHHHHHH----cCCCCEEEEEeCCCCCCcchHH------H--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC
Confidence 345677654 467899999999 99872222 2 23444443 469999999763 34577999999
Q ss_pred CC--CCcEEEEEeCCCCc--eeEEEecCCChHHHHHHHHhhh
Q 013325 238 LD--SIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 238 v~--~~P~l~ii~p~tg~--~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
|. .||++.++. .|+ .+..+.|..+.+.|...|....
T Consensus 79 V~~~~~PTl~~f~--~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 79 LDKESYPVFYLFR--DGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp CCGGGCSEEEEEE--TTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEe--CCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 99 999999996 365 3567789889988888777664
No 222
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=95.34 E-value=0.00059 Score=58.93 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=57.5
Q ss_pred HHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHh-hccEEEEEeecCChh--HHHHH----------------
Q 013325 173 KDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI-STNFIFWQVYDDTSE--GKKVC---------------- 233 (445)
Q Consensus 173 ~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l-~~~FV~~~~~~~s~e--g~~~~---------------- 233 (445)
+..+.-.+|++||++..+||..|.. +... |...-...+- ..++.++.++.+... ...+.
T Consensus 26 ~~l~~~~gk~vll~f~a~~C~~C~~-~~~~-l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~ 103 (159)
T 2ls5_A 26 VTLSSLRGKVVMLQFTASWCGVCRK-EMPF-IEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGAD 103 (159)
Confidence 3344446899999999999999987 4332 2221111222 356777776665431 22233
Q ss_pred --HHcC--CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHH
Q 013325 234 --TYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 234 --~~y~--v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
..|+ +..+|+++|||+ .|+++.++.|. ++.++.+.|
T Consensus 104 ~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~-~~~~l~~~l 143 (159)
T 2ls5_A 104 IFAKYALRDAGITRNVLIDR-EGKIVKLTRLY-NEEEFASLV 143 (159)
Confidence 3344 355999999996 68888887773 444444333
No 223
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=96.30 E-value=0.013 Score=50.53 Aligned_cols=87 Identities=13% Similarity=0.299 Sum_probs=57.7
Q ss_pred cCCeEEEEEeC-CCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhHH-------------------HHHH
Q 013325 179 QDKWLLVNLQS-TKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK-------------------KVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~~-~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg~-------------------~~~~ 234 (445)
.+|+++|++.. ++|..|.. . -+.+.++. ..++.++.++.++.+.. .++.
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~-~------~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATT-E------GLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCR 106 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHH-H------HHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHH
T ss_pred CCCcEEEEEeCCCCCCcHHH-H------HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHH
Confidence 36899999987 89998876 2 23444433 34578888888876542 3455
Q ss_pred HcCCCC------------CcEEEEEeCCCCceeEEEecCCC---hHHHHHHHHh
Q 013325 235 YYKLDS------------IPVVLVVDPITGQKMRSWCGMVQ---PESLLEDLVP 273 (445)
Q Consensus 235 ~y~v~~------------~P~l~ii~p~tg~~~~~~~G~~~---~~~~l~~L~~ 273 (445)
.|++.. .|+++|||+ .|.++..+.|... .+++++.|..
T Consensus 107 ~~~v~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~~~~~~~~~il~~l~~ 159 (163)
T 3gkn_A 107 AFDVIKEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKVKVAGHADAVLAALKA 159 (163)
T ss_dssp HTTCEEEEEETTEEEEEECCEEEEECT-TSCEEEEECSCCSTTHHHHHHHHHHH
T ss_pred HhCCccccccccccccCcceEEEEECC-CCeEEEEEcCCCcccCHHHHHHHHHH
Confidence 676654 899999996 6998888865422 3444444443
No 224
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.26 E-value=0.021 Score=42.73 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=54.9
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
+|.||.++|+.+.-.+..++||.+|..-+.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+..
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence 688999999999999999999999999998864 556677888763 443 4 347899999998 56666653
No 225
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.26 E-value=0.021 Score=43.49 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+...+|.||.++|+.+.-.+..++||.+|..-|.... +.+....+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKL-NVPVRQQRLLFK--GKA--L--ADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHT-CCCTTTCEEEET--TEE--C--CTTSBGGGGTCCSSBCCEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 4568899999999999999999999999999998763 556677778753 443 4 347899999998 4666554
No 226
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.25 E-value=0.0072 Score=46.01 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=37.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
++.|++.+++ |-+.+.|+..|.+++||++.|++..|++.+.
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 5589999999 8999999999999999999999999987553
No 227
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=96.24 E-value=0.011 Score=55.79 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=63.7
Q ss_pred cCCeEE-EEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH-------------------------HHH
Q 013325 179 QDKWLL-VNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV 232 (445)
Q Consensus 179 ~~K~Ll-V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg-------------------------~~~ 232 (445)
.+||++ +++..++|+.|.. ....+ +....+|-+.++.++++++|+.+. ..+
T Consensus 32 ~GK~vVL~~fpa~~CpvC~t-El~~l--~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~i 108 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTT-EFVSF--ARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTV 108 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHH-HHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHH
T ss_pred CCCEEEEEEEcCCCCcChHH-HHHHH--HHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHH
Confidence 578865 4667899999977 32111 111222334579999999887542 246
Q ss_pred HHHcCCC-------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 233 CTYYKLD-------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 233 ~~~y~v~-------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
+..|++. .+|.++|||| .|.++..+.|.. +.++++..|..+.
T Consensus 109 a~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~~~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 109 ARRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALK 161 (249)
T ss_dssp HHHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHhCCccccCCCcccceEEEECC-CCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence 7788876 8999999997 688888777653 5788887776654
No 228
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.22 E-value=0.023 Score=43.71 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=56.4
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
..+|.||.++|+.+.-.+..++||.+|..-|.... +.+....+|+. ..+. | +.+.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 47899999999999999999999999999998864 55667778884 3543 4 357999999998 5666654
No 229
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=96.22 E-value=0.031 Score=52.75 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEe--CCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCC---hhHHHHHHHc
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQ--STKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDT---SEGKKVCTYY 236 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~--~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s---~eg~~~~~~y 236 (445)
-..+|++++ ..++++||.++ .+||.-... | +.+..-+. .+++|..+|++. .+...+|..|
T Consensus 22 t~~nF~~vi----~~~~~vlV~Fy~~ApWCgl~P~------~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~ 89 (248)
T 2c0g_A 22 DELSFEKTV----ERFPYSVVKFDIASPYGEKHEA------F--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY 89 (248)
T ss_dssp CTTTHHHHH----TTSSEEEEEEEESSCCSHHHHH------H--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCCCccHHH------H--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence 446787754 56789999999 999972222 2 23444442 479999999876 2367899999
Q ss_pred CCC--CCcEEEEEeCCCCc--eeEEE--ecCCChHHHHHHHHhhhhc
Q 013325 237 KLD--SIPVVLVVDPITGQ--KMRSW--CGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 237 ~v~--~~P~l~ii~p~tg~--~~~~~--~G~~~~~~~l~~L~~~~~~ 277 (445)
+|. +||++.++. |. ....+ .|..+.+.|...|...+..
T Consensus 90 ~V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~ 133 (248)
T 2c0g_A 90 KVDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTPL 133 (248)
T ss_dssp TCCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred CCCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhcc
Confidence 999 999999885 55 24556 7888999988888877653
No 230
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.20 E-value=0.03 Score=43.82 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=57.9
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEEe
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 444 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~~ 444 (445)
+...+|.||..+|+.+.-.+..++||..|-..|.... +......+|+.. .+. | +.+.||.++|+.+++|.+..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk~--L--~d~~tL~~~~i~g~~i~l~~ 75 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GRV--L--QDDKKLQEYNVGGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCTTEEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCcEEEEEe
Confidence 4578999999999999999999999999999998764 556667788763 443 4 44889999999666666653
No 231
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=96.19 E-value=0.0064 Score=44.09 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=36.8
Q ss_pred hHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 9 ~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
+++..|+.|+-- ||+.+..|+.+|+--||||..|++.|=.
T Consensus 16 dmdavls~fvrs-tgaepgLaRDlleGKnWDl~AAL~D~eq 55 (73)
T 2l2d_A 16 DMDAVLSDFVRS-TGAEPGLARDLLEGKNWDLTAALSDYEQ 55 (73)
T ss_dssp CHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCcchhHHhhccCCccHhHHhhhHHH
Confidence 457789999999 9999999999999999999999999865
No 232
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.12 E-value=0.0076 Score=43.73 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
-++.|++.+++ +-.+...+++.|.+++||++.||+..|+.
T Consensus 17 ~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35689999999 44578899999999999999999999975
No 233
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=96.11 E-value=0.023 Score=49.74 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=62.4
Q ss_pred HcCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHH-------------------HHHHHcC
Q 013325 178 VQDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYK 237 (445)
Q Consensus 178 ~~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~-------------------~~~~~y~ 237 (445)
.++||++|+++ .+||..|.. -...+ ++...+|-+.++.++.++.++++.. .+++.|+
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~-e~~~l--~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~yg 107 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTK-ELCTF--RDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYN 107 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECS-SCEES--CCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTT
T ss_pred cCCCEEEEEEeCCCCCCCccc-chhhh--hhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcC
Confidence 36899999987 899999976 21111 1222334445788888888876642 2345555
Q ss_pred CC----------CCcEEEEEeCCCCceeEEEecC-----CChHHHHHHHHhhhh
Q 013325 238 LD----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFMD 276 (445)
Q Consensus 238 v~----------~~P~l~ii~p~tg~~~~~~~G~-----~~~~~~l~~L~~~~~ 276 (445)
+. .+|+++|||+ +|.+...+.+. .+.++++..|.+...
T Consensus 108 v~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 108 VYHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp CEEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred CcccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 41 3678899996 68887776542 367888888877654
No 234
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.09 E-value=0.036 Score=42.66 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhc--CCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 441 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~ 441 (445)
+...+|.||..+|+.+.-.+..++||.+|..-|.... .+......+|+.. .+. | +.+.||.++|+. +++|.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~ 76 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA--GKI--L--SDDVPIRDYRIDEKNFVV 76 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET--TEE--C--CTTSBGGGGCCCTTSEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC--CEE--C--cCCCCHHHcCCCCCCEEE
Confidence 3468899999999999999999999999999998862 4566777888754 443 4 447899999998 56666
Q ss_pred EE
Q 013325 442 VT 443 (445)
Q Consensus 442 v~ 443 (445)
+.
T Consensus 77 l~ 78 (85)
T 2wyq_A 77 VM 78 (85)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 235
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=95.08 E-value=0.00096 Score=56.16 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=50.2
Q ss_pred cCC-eEEEEEeCCCCcchhhhhhhcccCChhHHHHh---hccEEEEEeecCChh-----------------------HHH
Q 013325 179 QDK-WLLVNLQSTKEFSSHMVLNRDTWANEAVSQTI---STNFIFWQVYDDTSE-----------------------GKK 231 (445)
Q Consensus 179 ~~K-~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l---~~~FV~~~~~~~s~e-----------------------g~~ 231 (445)
.+| ++||++..+||..|.. +...+ ..+.+-+ ..++.++.++.+... ...
T Consensus 24 ~gk~~vll~F~a~wC~~C~~-~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (143)
T 2lus_A 24 KDKDIIGFYFSAHWCPPCRG-FTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN 99 (143)
Confidence 467 9999999999999987 53322 1222222 135666666665432 135
Q ss_pred HHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 232 VCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 232 ~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
++..|++..+|+++||++ .|+++.+
T Consensus 100 ~~~~~~v~~~P~~~lid~-~G~i~~~ 124 (143)
T 2lus_A 100 VTAKYGITGIPALVIVKK-DGTLISM 124 (143)
Confidence 778899999999999996 5877665
No 236
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.09 E-value=0.011 Score=44.98 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
-++.|++.++| +-.+.+.+++.|.+++||++.||+..|...+
T Consensus 29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 35689999999 4458899999999999999999999998644
No 237
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.08 E-value=0.033 Score=43.20 Aligned_cols=71 Identities=21% Similarity=0.148 Sum_probs=57.2
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...+|.||..+|+.+.-.+..++||.+|..-|... .+.+....+|+.. .+. | +.++||.++|+. +++|.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--Gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-QGLPKKQQQLEFQ--GQV--L--QDWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-TCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-hCCChHHEEEEEC--CEE--c--cCCCCHHHCCCCCCCEEEEE
Confidence 46899999999999999999999999999999886 3666778888753 443 4 457999999998 4666654
No 238
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=96.06 E-value=0.057 Score=49.35 Aligned_cols=102 Identities=8% Similarity=0.002 Sum_probs=64.7
Q ss_pred CcHHHHHHHHH--HcCCeEEEEEeCCC--CcchhhhhhhcccCChhHHHH---h--hccEEEEEeecCChhHHHHHHHcC
Q 013325 167 GSFEKAKDAAS--VQDKWLLVNLQSTK--EFSSHMVLNRDTWANEAVSQT---I--STNFIFWQVYDDTSEGKKVCTYYK 237 (445)
Q Consensus 167 gs~~eA~~~Ak--~~~K~LlV~l~~~~--~f~~~~~~~rdv~~~~~V~~~---l--~~~FV~~~~~~~s~eg~~~~~~y~ 237 (445)
+.-.+.++... +..++++|.+..++ |..|.. |+.++. .+.++ + ..++.+..+|.+ +...++..|+
T Consensus 5 ~~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~--c~~~~~--~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~ 78 (229)
T 2ywm_A 5 LDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQT--AEELLK--ETVEVIGEAVGQDKIKLDIYSPF--THKEETEKYG 78 (229)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGH--HHHHHH--HHHHHHHHHHCTTTEEEEEECTT--TCHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEccCCCCcccHH--HHHHHH--HHHHHHhccCCCCceEEEEecCc--ccHHHHHHcC
Confidence 33334444433 45567666666333 555554 343332 23332 2 456777766654 4678999999
Q ss_pred CCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 238 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 238 v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+..||++.++. .|....++.|..+.++|...+...+.
T Consensus 79 v~~~Ptl~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~~ 115 (229)
T 2ywm_A 79 VDRVPTIVIEG--DKDYGIRYIGLPAGLEFTTLINGIFH 115 (229)
T ss_dssp CCBSSEEEEES--SSCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred CCcCcEEEEEC--CCcccceecCCccHHHHHHHHHHHHh
Confidence 99999999996 35667788898888887777766554
No 239
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=96.06 E-value=0.053 Score=49.89 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|+.+|||+ .|+++.++.|..+++++...|...+.
T Consensus 178 pttfLID~-~G~vv~~~~g~~~~~~l~~~I~~ll~ 211 (215)
T 2i3y_A 178 FEKFLVGP-DGIPVMRWSHRATVSSVKTDILAYLK 211 (215)
T ss_dssp TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred ceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67899995 79999999998899988888887765
No 240
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.05 E-value=0.0093 Score=46.78 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=37.5
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
+++|++++++ |-+.+.|+..|..++||++.|++..|+....
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 5689999999 9999999999999999999999999996543
No 241
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.01 E-value=0.037 Score=43.27 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=56.5
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
..+|.||.++|+.+.-.+..++||..|..-|... .+.+....+|+.. .+. | +.++||.++|+. +++|.+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--Gk~--L--~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-TCSCTTTEEEESS--SSC--C--CTTSBHHHHHCSTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-hCCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999886 4666777888753 543 4 457999999998 5666654
No 242
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=95.96 E-value=0.033 Score=44.44 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+|.||.++|+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~-gi~~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHT-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998863 666777888753 443 4 347999999998 5666554
No 243
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=95.96 E-value=0.031 Score=49.15 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=59.2
Q ss_pred cCCeEEEEEeCCC-CcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhH--------------------HHHHHHc
Q 013325 179 QDKWLLVNLQSTK-EFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--------------------KKVCTYY 236 (445)
Q Consensus 179 ~~K~LlV~l~~~~-~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg--------------------~~~~~~y 236 (445)
.+||+||++..++ |..|.. . -+.+.++.+ .++.++.++.++++. ..+++.|
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~-~------~~~l~~l~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 115 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCAT-S------VRTFDERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDY 115 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCH-H------HHHHHHHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHT
T ss_pred CCCEEEEEEEeCCCCchHHH-H------HHHHHHHHhhcCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHh
Confidence 3789999999888 998876 3 244444443 567777777775542 2467788
Q ss_pred CCCCC---------cEEEEEeCCCCceeEEEec-CC----ChHHHHHHHHh
Q 013325 237 KLDSI---------PVVLVVDPITGQKMRSWCG-MV----QPESLLEDLVP 273 (445)
Q Consensus 237 ~v~~~---------P~l~ii~p~tg~~~~~~~G-~~----~~~~~l~~L~~ 273 (445)
++... |.++|||+ +|+++..+.| .. ..+++++.|.+
T Consensus 116 gv~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g~~~~~~~~~~~~l~~l~~ 165 (175)
T 1xvq_A 116 GVTIADGPMAGLLARAIVVIGA-DGNVAYTELVPEIAQEPNYEAALAALGA 165 (175)
T ss_dssp TCBBCSSTTTTSBCSEEEEECT-TSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred CCcccccccCCcccceEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHHHh
Confidence 88655 99999995 6999988864 22 34555555543
No 244
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=95.96 E-value=0.033 Score=49.60 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=59.8
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhH-HHHH-------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-KKVC------------------- 233 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg-~~~~------------------- 233 (445)
.+||+||++. .++|..|.. - -+.+.++. ..++.++.++.++.+. ..++
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~-e------~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 101 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPT-E------LGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG 101 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHH-H------HHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCccHH-H------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCch
Confidence 5799999998 489998876 2 13333332 3468888888777653 2333
Q ss_pred ---HHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 234 ---TYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 234 ---~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
+.|++. ..|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 102 ~~~~~ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~ 155 (186)
T 1n8j_A 102 ALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155 (186)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 334443 2699999996 699888887753 5777877776654
No 245
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=95.90 E-value=0.028 Score=48.65 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=54.1
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHH-H------------------HHHHcCC
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-K------------------VCTYYKL 238 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~-~------------------~~~~y~v 238 (445)
.+|+++|++. .++|..|.. -...+ .....++-..++.++.++.++++.. . +++.|++
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~-e~~~l--~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv 105 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTK-EMCTF--RDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNV 105 (157)
T ss_dssp TTSCEEEEECSCTTCCC-------CC--SCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred CCCeEEEEecCCCCCCcccc-chhhc--ccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCC
Confidence 4789999987 889999976 22221 1222334445788888888887652 2 3445554
Q ss_pred C-----------CCcEEEEEeCCCCceeEEEecC-----CChHHHHHHHH
Q 013325 239 D-----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLV 272 (445)
Q Consensus 239 ~-----------~~P~l~ii~p~tg~~~~~~~G~-----~~~~~~l~~L~ 272 (445)
. ..|+++|||+ .|.+...+.|. .+.+++++.|.
T Consensus 106 ~~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 106 AWEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVVK 154 (157)
T ss_dssp EEECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred ccccccCCCcceeeeeEEEECC-CCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 1 3577889996 58887776542 34566666554
No 246
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=95.90 E-value=0.03 Score=51.18 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=60.5
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhH-H----------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-K---------------------- 230 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg-~---------------------- 230 (445)
.+||+||++. .++|..|.. - -+.+.++. ..++.++.++.++.+. .
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~-e------~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D 119 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPT-E------IIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSD 119 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHH-H------HHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEEC
T ss_pred CCCeEEEEEECCCCCCCCHH-H------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEEC
Confidence 4789999999 999998876 2 13333322 2467777777776542 1
Q ss_pred ---HHHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhhh
Q 013325 231 ---KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 275 (445)
Q Consensus 231 ---~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~~ 275 (445)
.+++.|++. .+|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 120 ~~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 120 LTHQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp TTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred CchHHHHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 234455552 4899999996 699888877643 5678887777654
No 247
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.88 E-value=0.042 Score=43.62 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=54.8
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhc--CCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+|.||.++|+.+.-.+..++||.+|..-|.... .+.+....+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKI--L--NDDTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEE--C--CTTSBGGGGTCCSSSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 688999999999999999999999999998863 4566777888753 553 4 346899999998 5666554
No 248
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=95.88 E-value=0.039 Score=41.54 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=54.4
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
.+|.||. +|+.+.-.+..++||..|..-+.... +.+....+|+. .++. | +.+.||.++|+. +++|.+..
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~qrL~~--~gk~--L--~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIY--SGKI--L--KDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHh-CCCHHHEEEEE--CCeE--c--CCCCCHHHcCCCCCCEEEEEE
Confidence 6788888 99999999999999999999998864 56677788874 3553 4 346899999998 56666653
No 249
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=95.88 E-value=0.045 Score=42.37 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=56.7
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
....+|.||..+|+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TEE--C--CTTSBGGGGTCCTTCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 4568999999999999999999999999999998764 556666777753 332 4 348999999998 4666554
No 250
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=95.87 E-value=0.028 Score=49.70 Aligned_cols=88 Identities=15% Similarity=0.292 Sum_probs=57.1
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhH-H------------------HHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-K------------------KVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg-~------------------~~~~ 234 (445)
.+||++|++. ..+|..|.. - -+.+.++. ..++.++.+..++.+. . .++.
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~-e------l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 122 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSST-E------GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCK 122 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHH-H------HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred CCCCEEEEEEcCCCCCchHH-H------HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHH
Confidence 4788999887 788998876 2 23333333 3468888888887654 2 2344
Q ss_pred HcCCC------------CCcEEEEEeCCCCceeEEEecCC---ChHHHHHHHHhh
Q 013325 235 YYKLD------------SIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVPF 274 (445)
Q Consensus 235 ~y~v~------------~~P~l~ii~p~tg~~~~~~~G~~---~~~~~l~~L~~~ 274 (445)
.|++. ..|+++|||+ .|.++..+.|.. ..+++++.|...
T Consensus 123 ~~gv~~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~il~~l~~l 176 (179)
T 3ixr_A 123 AFDVIKEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVPGHAEEVLNKLKAH 176 (179)
T ss_dssp HTTCEEEECCC--CEEEECCEEEEECT-TSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred HcCCcccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 55552 2588999996 699888886542 345566655543
No 251
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85 E-value=0.0075 Score=44.51 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=36.6
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
++.|.+++++ |-+.+.|+..|.+++||++.|++..|++.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5689999999 899999999999999999999999998643
No 252
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=95.80 E-value=0.079 Score=48.33 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.7
Q ss_pred cEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 242 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
|+.+|||+ .|+++.++.|..+++++...|...+.
T Consensus 160 ~ttflID~-~G~i~~~~~g~~~~~~l~~~I~~ll~ 193 (207)
T 2r37_A 160 FEKFLVGP-DGIPIMRWHHRTTVSNVKMDILSYMR 193 (207)
T ss_dssp TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 67899995 79999999998899888888877765
No 253
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=95.78 E-value=0.013 Score=47.98 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=36.3
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
++.|++..++ +-.+.+.++..|.+++||++.||+..|+.+.
T Consensus 67 ~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 5689999999 5568899999999999999999999998643
No 254
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.76 E-value=0.072 Score=40.40 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=56.5
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
...|.||.++|+.+.-.+..++||..|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+..
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE-GVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhc-CCCHHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEEE
Confidence 47899999999999889999999999999998753 666677788753 443 4 447999999998 56666653
No 255
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.034 Score=44.47 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=56.2
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
+...+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.++||.++|+.+ ++|.+.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBSGGGTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 4578999999999999999999999999999998864 556667778753 443 4 4578999999984 556554
No 256
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.74 E-value=0.046 Score=43.67 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=57.4
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+....|.||..+|+.+.-....++||..|..-+.... +.+....+|+.. .+. | ..+.||.++|+. +++|.+.
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~-gip~~~qrLif~--Gk~--L--~d~~tl~dy~i~~g~~I~l~ 91 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY 91 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTCEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCChhhEEEEEC--CeE--c--CCCCCHHHCCCCCCCEEEEE
Confidence 4578999999999999999999999999999998764 566677777764 553 4 457899999998 5666554
No 257
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=95.71 E-value=0.059 Score=49.68 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=60.4
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhH-H----------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-K---------------------- 230 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg-~---------------------- 230 (445)
.+||+||++. .++|..|.. -. +.+.++. ..++.++.++.++.+. .
T Consensus 55 ~Gk~vvl~F~patwCp~C~~-e~------p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D 127 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPT-EI------IEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSD 127 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHH-HH------HHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEEC
T ss_pred CCCeEEEEEEcCCCCCchHH-HH------HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEEC
Confidence 5799999999 999998876 21 2333322 2467777777766432 1
Q ss_pred ---HHHHHcCC-----CCCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHhhh
Q 013325 231 ---KVCTYYKL-----DSIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM 275 (445)
Q Consensus 231 ---~~~~~y~v-----~~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~~~ 275 (445)
.++..|++ ..+|+++|||+ .|.++..+.|. .+.++++..|....
T Consensus 128 ~~~~~~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 128 INKDISKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp TTSHHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred CchHHHHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 24445666 25799999996 69988887774 35678887777654
No 258
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.68 E-value=0.054 Score=43.20 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCceEEEEECC---CCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC---CCCCcccCCCCcCCchhhcCCc-C
Q 013325 365 SLLCRVGVRLP---DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA---IPGATKSLDYDSKLTFEDSGLA-N 437 (445)
Q Consensus 365 ~~~~~I~iRlP---~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~---fPr~~~~l~~~~~~Tl~e~gL~-~ 437 (445)
.+.++|.|+.| +|..+.++|..+.||+.|-.-|.... +......+|.-. +|.....+ .+...||...|+. +
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~-gip~~~q~L~~~~~~~~~~~~~L-~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLL-KVPVSELLLSYESSKMPGREIEL-ENDLQPLQFYSVENG 84 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTT-TCCTTTCEEEEECTTSCSCEEEC-CCSSSBSGGGTCCTT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHH-CCChhHeEEEEEcCCCCceeecc-CCCcccHhhcCCCCC
Confidence 45789999976 68899999999999999999998864 556666667643 55443223 4778999999997 5
Q ss_pred ceEEEEe
Q 013325 438 AMISVTW 444 (445)
Q Consensus 438 ~~v~v~~ 444 (445)
.+|.|.+
T Consensus 85 ~~I~V~d 91 (97)
T 1wjn_A 85 DCLLVRW 91 (97)
T ss_dssp CEEEEEC
T ss_pred CEEEEEe
Confidence 7788876
No 259
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=95.67 E-value=0.037 Score=51.44 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=55.9
Q ss_pred cCCeEEEEEeCCC-Ccchh-----hhhhhcccCChhHHHHhhccEEEEEeecCChhH---------------------HH
Q 013325 179 QDKWLLVNLQSTK-EFSSH-----MVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG---------------------KK 231 (445)
Q Consensus 179 ~~K~LlV~l~~~~-~f~~~-----~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg---------------------~~ 231 (445)
.+||++||++-.+ |+.|. .-+ +.+.+.. .++.+++++.++++. ..
T Consensus 47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El-------~~~~~~~-~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~ 118 (224)
T 3keb_A 47 SHTPKLIVTLLSVDEDEHAGLLLLRET-------RRFLDSW-PHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRD 118 (224)
T ss_dssp TTCCEEEEECSCTTCSTTTSHHHHHHH-------HHHHTTC-TTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTT
T ss_pred CCCcEEEEEEeCCCCCCCCCCccHHHH-------HHHHHHc-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchH
Confidence 3678888888665 78777 201 1111111 345555566555432 23
Q ss_pred HHHHcCCCC---------CcEEEEEeCCCCceeEEEec-----CCChHHHHHHHHhhhhcC
Q 013325 232 VCTYYKLDS---------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 232 ~~~~y~v~~---------~P~l~ii~p~tg~~~~~~~G-----~~~~~~~l~~L~~~~~~~ 278 (445)
++..|++.. .|+.+|||+ .|.+...+.+ ..+.++++..|.......
T Consensus 119 vak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~ 178 (224)
T 3keb_A 119 FHKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQQA 178 (224)
T ss_dssp HHHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcc
Confidence 556677643 699999996 5887766543 356788888887765533
No 260
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.62 E-value=0.07 Score=43.05 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
.....|-|+.+.|+.+.-....++||.+|..-|... .+.+...-+|+.. .+. | +.+.||.+.|+. .++|.+.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-~Gip~~qQrLi~~--Gk~--L--~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-TGTRWNKIVLKKW--YTI--F--KDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEEEET--TEE--C--CSSCBHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCHHHEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 457899999999999999999999999999999886 4667777888754 664 4 458999999998 4667666
Q ss_pred e
Q 013325 444 W 444 (445)
Q Consensus 444 ~ 444 (445)
+
T Consensus 99 ~ 99 (100)
T 1uh6_A 99 Y 99 (100)
T ss_dssp C
T ss_pred e
Confidence 5
No 261
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=95.59 E-value=0.1 Score=45.34 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=54.9
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhH-HHHHH-------------------H
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG-KKVCT-------------------Y 235 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg-~~~~~-------------------~ 235 (445)
.+||++|++. .++|..|.. - -+.+.++.+ .++.++.++.++++. ..++. .
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~-~------~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 118 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCET-E------TKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEK 118 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHH-H------HHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGGGG
T ss_pred CCCeEEEEEECCCCCCchHH-H------HHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcHHH
Confidence 3689999997 789998875 2 233333322 355555556555442 22333 3
Q ss_pred cCCC---------CCcEEEEEeCCCCceeEEEec-----CCChHHHHHHHHhh
Q 013325 236 YKLD---------SIPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPF 274 (445)
Q Consensus 236 y~v~---------~~P~l~ii~p~tg~~~~~~~G-----~~~~~~~l~~L~~~ 274 (445)
|++. ..|+++|||+ .|.++..+.| ..+++++++.|.+.
T Consensus 119 ~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 119 YGVLIGEGALKGILARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp GTCBBCSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred hCCEecccccCCceeeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 3332 1589999996 6888888765 24578888877654
No 262
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.58 E-value=0.066 Score=41.58 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=58.0
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEEEe
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 444 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v~~ 444 (445)
+...+|.||..+|+.+.-.+..++||..|-..|.... +.+....+|+.. ++. | +.+.||.++|+.+++|.+++
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GRV--L--QDDKKLQEYNVGGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCTTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CEE--C--CCCCcHHHcCCCCcEEEEEE
Confidence 3568999999999999999999999999999998864 566677788753 342 4 34889999999667776654
No 263
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=95.54 E-value=0.049 Score=43.54 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=54.3
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEe
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 259 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~ 259 (445)
.++.++.+..++|..|+. +. .+|. -+..++-+..++++.++...++..|+ ...|.+ +++ |+.+ . .
T Consensus 15 ~~~~v~~f~~~~C~~C~~-~~-~~L~------~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l-~~~---g~~~-~-~ 79 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDE-AK-EVLQ------PYKDRFILQEVDITLPENSTWYERYK-FDIPVF-HLN---GQFL-M-M 79 (100)
T ss_dssp CCCEEEEEECSSCHHHHH-HH-HHTS------TTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEE-EES---SSEE-E-E
T ss_pred CCCEEEEEeCCCCcchHH-HH-HHHH------HhhhCCeEEEEECCCcchHHHHHHHC-CCCCEE-EEC---CEEE-E-e
Confidence 355677788899999998 42 2332 11234566667887556678899999 999976 344 6654 3 3
Q ss_pred cCCChHHHHHHHHhhhh
Q 013325 260 GMVQPESLLEDLVPFMD 276 (445)
Q Consensus 260 G~~~~~~~l~~L~~~~~ 276 (445)
|..+++.+...|..+++
T Consensus 80 ~g~~~~~l~~~l~~~~~ 96 (100)
T 1wjk_A 80 HRVNTSKLEKQLRKLSG 96 (100)
T ss_dssp SSCCHHHHHHHHHSSSC
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 44788877766665543
No 264
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.52 E-value=0.063 Score=40.59 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=55.4
Q ss_pred ceEEEEECCCCceE-EEe-eCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRM-QRN-FLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~-~rr-F~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
..+|.||.++|+.+ .-. +..++||..|..-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~-gip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELF-HVEPGLQRLFYR--GKQ--M--EDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 46899999999885 777 999999999999998864 666777788753 443 4 457899999998 5667665
Q ss_pred e
Q 013325 444 W 444 (445)
Q Consensus 444 ~ 444 (445)
.
T Consensus 75 ~ 75 (78)
T 2faz_A 75 V 75 (78)
T ss_dssp E
T ss_pred E
Confidence 3
No 265
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=95.47 E-value=0.021 Score=46.23 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh---HHHHHHHcCCCCCcEEEEE
Q 013325 171 KAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE---GKKVCTYYKLDSIPVVLVV 247 (445)
Q Consensus 171 eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e---g~~~~~~y~v~~~P~l~ii 247 (445)
+.+....+ ++.++| +..+||..|+. +.. +.+-+...|.+..++.+... ...++..|++..+|++ ++
T Consensus 11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~-~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~ 79 (116)
T 2e7p_A 11 KKAKELAS-SAPVVV-FSKTYCGYCNR-VKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FI 79 (116)
T ss_dssp HHHHHHHT-SSSEEE-EECTTCHHHHH-HHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EE
T ss_pred HHHHHHHc-CCCEEE-EECCCChhHHH-HHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EE
Confidence 33344443 456666 88999999998 532 22223445777655544321 1457888999999999 55
Q ss_pred eCCCCceeEEEecCC---ChHHHHHHHH
Q 013325 248 DPITGQKMRSWCGMV---QPESLLEDLV 272 (445)
Q Consensus 248 ~p~tg~~~~~~~G~~---~~~~~l~~L~ 272 (445)
+|+.+..+.|.. +.+.|...|.
T Consensus 80 ---~g~~v~~~~~~~~~~~~~~l~~~l~ 104 (116)
T 2e7p_A 80 ---GGKQIGGCDTVVEKHQRNELLPLLQ 104 (116)
T ss_dssp ---TTEEEECHHHHHHHHHTTCHHHHHH
T ss_pred ---CCEEECChHHHHHHHhCChHHHHHH
Confidence 477776555543 3334444443
No 266
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=95.44 E-value=0.064 Score=42.37 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=55.0
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
.+|.||..+|+.+.-.+..++||.+|..-|.... +.+....+|+. -.+. | +.+.||.++|+. +++|.+.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-gip~~~qrL~~--~G~~--L--~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhHEEEEE--CCEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 4689999999999999999999999999998864 66667788885 3443 4 457899999998 5666654
No 267
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.40 E-value=0.06 Score=41.31 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=55.8
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
..+|.||.++|+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~ip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--BEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEEEE
Confidence 46899999999999999999999999999998864 566777888864 332 4 457899999998 5666654
No 268
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=95.40 E-value=0.031 Score=52.27 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=59.8
Q ss_pred cCCeEEEEEeC-CCCcchhhhhhhcccCChhHHHHhh----ccEEEEEeecCChhH------------------------
Q 013325 179 QDKWLLVNLQS-TKEFSSHMVLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 179 ~~K~LlV~l~~-~~~f~~~~~~~rdv~~~~~V~~~l~----~~FV~~~~~~~s~eg------------------------ 229 (445)
.+||+||++.. ++|..|.. - -+.+.++.+ .++.+++++.++.+.
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~-e------l~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D 148 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPT-E------IIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSD 148 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHH-H------HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEEC
T ss_pred CCCEEEEEEECCCCCCchHH-H------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeC
Confidence 47999999988 89998876 2 234444332 468888888877554
Q ss_pred --HHHHHHcCCC------CCcEEEEEeCCCCceeEEEecCC----ChHHHHHHHHhh
Q 013325 230 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPF 274 (445)
Q Consensus 230 --~~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~~----~~~~~l~~L~~~ 274 (445)
..++..|++. .+|.++|||+ .|.++..+.|.. ..++++..|...
T Consensus 149 ~~~~v~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~l 204 (240)
T 3qpm_A 149 LTHQISKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQAF 204 (240)
T ss_dssp TTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred chHHHHHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 1244556664 5799999997 698887776632 456776666543
No 269
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.38 E-value=0.027 Score=41.64 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNES 53 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w-~le~Av~~~~~~~~~ 53 (445)
+.|++.+++ |-+.+.|+..|.+++| |+|.|++..|+..+.
T Consensus 21 ~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 21 SALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 478999999 9999999999999999 999999999987543
No 270
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=95.33 E-value=0.027 Score=39.36 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
-++.|++.|++ |-|.+.|++.|..++||++.|.+.-.+
T Consensus 11 ~~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34689999999 999999999999999999999987654
No 271
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=95.30 E-value=0.036 Score=48.16 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=52.0
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh-ccEEEEEeecCChhH-H--------------------HHHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-K--------------------KVCTY 235 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~-~~FV~~~~~~~s~eg-~--------------------~~~~~ 235 (445)
.+|+++|++. +.+|..|.. .-+.+.++.. .++.++.++.++++. . .++..
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~-------~~~~l~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 117 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQ-------QTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGEN 117 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHH-------HHHHHHHHSCTTTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHH
T ss_pred CCCcEEEEEECCCCCCccHH-------HHHHHHHHhhcCCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHH
Confidence 3677778776 567877754 1233444433 345555555555432 1 34455
Q ss_pred cCCCC------CcEEEEEeCCCCceeEEEecC-----CChHHHHHHHHh
Q 013325 236 YKLDS------IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVP 273 (445)
Q Consensus 236 y~v~~------~P~l~ii~p~tg~~~~~~~G~-----~~~~~~l~~L~~ 273 (445)
|++.. .|+++|||+ .|.++..+.+. .+.+++++.|.+
T Consensus 118 ~gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 118 YGVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp HTCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred hCCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 55542 799999996 68888775542 345777776653
No 272
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.28 E-value=0.12 Score=43.30 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=55.8
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
....+|.|+.. |+.+.-++..++||..|..-|.... +......+|+.. .+. | +.++||.++|+.+ ++|.|.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~dygI~~gstI~lv 101 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRF-KSQTDQLVLIFA--GKI--L--KDQDTLIQHGIHDGLTVHLV 101 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHH-CSCSSSEEEEET--TEE--E--STTSCGGGTTCSSSEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHH-CcCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 45789999998 9999999999999999999998864 556677788753 443 4 4578999999984 555554
No 273
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.25 E-value=0.021 Score=44.50 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=37.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
++.|++.+++ |-+.+.|+..|.++|||++.|++..|++.+.
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 4589999999 9999999999999999999999999986543
No 274
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=95.22 E-value=0.12 Score=44.58 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=52.7
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhH---------------------HHHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg---------------------~~~~~ 234 (445)
.+||++|++. +.+|..|.. - -+.+.++.+ .++.++.++.++++. ..++.
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~-~------~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 113 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICST-Q------TRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGR 113 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHH-H------HHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHH
T ss_pred CCCEEEEEEECCCCCCccHH-H------HHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHH
Confidence 4688999997 588888865 2 122333222 245555555544332 23445
Q ss_pred HcCCC----C--CcEEEEEeCCCCceeEEEecC-----CChHHHHHHHHh
Q 013325 235 YYKLD----S--IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVP 273 (445)
Q Consensus 235 ~y~v~----~--~P~l~ii~p~tg~~~~~~~G~-----~~~~~~l~~L~~ 273 (445)
.|++. . .|+++|||+ .|.++..+.|. .+.+++++.|.+
T Consensus 114 ~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 114 DYALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp HHTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred HhCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 55553 2 399999996 69988888763 234777777653
No 275
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.16 E-value=0.026 Score=41.75 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHc-CCCHHHHHHHHhcCCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQAT-SWKLDEAIQLFYVGNES 53 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~-~w~le~Av~~~~~~~~~ 53 (445)
+.|++++++ |-+.+.|+..|.++ |||++.|++..|+..+.
T Consensus 11 ~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 11 TALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 378999999 99999999999999 79999999999997543
No 276
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=95.14 E-value=0.084 Score=41.27 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=49.2
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCC
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 263 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~ 263 (445)
++.+..+||..|.. +. + +.+-+...+ +..+|++. ...++..|++. .|.+.+ .+|+.+. |..+
T Consensus 3 vv~f~a~~C~~C~~-~~------~-~L~~~~~~~-~~~vdid~--~~~l~~~~g~~-vPtl~~---~~G~~v~---g~~~ 64 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQ-AV------E-ALAQARAGA-FFSVFIDD--DAALESAYGLR-VPVLRD---PMGRELD---WPFD 64 (87)
T ss_dssp EEEEECSSCHHHHH-HH------H-HHHHTTCCC-EEEEECTT--CHHHHHHHTTT-CSEEEC---TTCCEEE---SCCC
T ss_pred EEEEECCCCchHHH-HH------H-HHHHHHHhh-eEEEECCC--CHHHHHHhCCC-cCeEEE---ECCEEEe---CCCC
Confidence 56677899999998 52 1 222223322 24457654 33477889997 999987 3587764 8888
Q ss_pred hHHHHHHHHhhhh
Q 013325 264 PESLLEDLVPFMD 276 (445)
Q Consensus 264 ~~~~l~~L~~~~~ 276 (445)
++.+...|...+.
T Consensus 65 ~~~L~~~l~~~~~ 77 (87)
T 1ttz_A 65 APRLRAWLDAAPH 77 (87)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766554
No 277
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.13 E-value=0.07 Score=42.21 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
...+|.||..+|+.+..++..++||..|..-|.... ....+|+. -.+. | .|.+.||.++|+.+ ++|.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~--~Gk~--L-~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ESQMKLIY--QGRL--L-QDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TTTCEEEE--TTEE--C-CCSSCBTTTTTCCTTEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cCcEEEEE--CCEE--c-cCCcCCHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999999987652 45666764 3543 4 34348999999984 556554
No 278
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.10 E-value=0.14 Score=41.81 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=56.3
Q ss_pred CceEEEEECC---CCceEEEeeCC-CCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceE
Q 013325 366 LLCRVGVRLP---DGRRMQRNFLR-TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI 440 (445)
Q Consensus 366 ~~~~I~iRlP---~G~r~~rrF~~-~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v 440 (445)
+.++|.|+.| +|+.+...+.. ++||..|..-|... .+.+...-+|+.. .+. + +.+.||.+.|+. +++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-IQIPANKQKLSGK--AGF--L--KDNMSLAHYNVGAGEIL 98 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-TTCCTTTSEEECS--SSB--C--CTTSBTTTTTCSSSCEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCcHHHCCCCCCCEE
Confidence 4689999999 89999999997 99999999999886 3666667778753 332 3 447999999998 5666
Q ss_pred EEE
Q 013325 441 SVT 443 (445)
Q Consensus 441 ~v~ 443 (445)
.+.
T Consensus 99 ~l~ 101 (111)
T 1we6_A 99 TLS 101 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 279
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.10 E-value=0.048 Score=40.57 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=36.7
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
+..|++.+++ .-.+...+++.|.++++|++.||+..|+..+.
T Consensus 20 ~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5589999999 55678888999999999999999999997654
No 280
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=95.08 E-value=0.085 Score=51.79 Aligned_cols=111 Identities=12% Similarity=0.173 Sum_probs=75.1
Q ss_pred CCCCcCcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcC
Q 013325 158 RPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK 237 (445)
Q Consensus 158 ~pp~~~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~ 237 (445)
.|....+-..++.... ....+.++|++.+++|..|+. +.. .| ..+..-++..+.|..++.+..+...+++.|+
T Consensus 116 ~p~v~~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~-~~~-~~--~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fg 188 (361)
T 3uem_A 116 LPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDG-KLS-NF--KTAAESFKGKILFIFIDSDHTDNQRILEFFG 188 (361)
T ss_dssp SCSEEECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHH-HHH-HH--HHHHGGGTTTCEEEEECTTSGGGHHHHHHTT
T ss_pred CCcceecCcccHHHHh---cCCCCcEEEEEEeCCchhHHH-HHH-HH--HHHHHHccCceEEEEecCChHHHHHHHHHcC
Confidence 4544444455555332 234567788999999999998 531 11 2333344556777777877667888999999
Q ss_pred CCC--CcEEEEEeCCCCceeEEEe---cCCChHHHHHHHHhhhhc
Q 013325 238 LDS--IPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 238 v~~--~P~l~ii~p~tg~~~~~~~---G~~~~~~~l~~L~~~~~~ 277 (445)
+.. +|++.++... .....+. |..+++.+...+..+++.
T Consensus 189 i~~~~~P~~~~~~~~--~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 189 LKKEECPAVRLITLE--EEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp CCTTTCSEEEEEECC----CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred CCccCCccEEEEEcC--CcccccCCCccccCHHHHHHHHHHHhcC
Confidence 987 9999999952 2223333 678999998888888764
No 281
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=95.02 E-value=0.29 Score=44.84 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=69.0
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCC--CC
Q 013325 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SI 241 (445)
Q Consensus 164 ~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~--~~ 241 (445)
+-.-+.+.+-.......+++++.+.+.++..|.. +. ..| ..|.+-.+.++.|.-++.+..+...+++.|++. .+
T Consensus 115 v~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~-~~-~~~--~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~ 190 (227)
T 4f9z_D 115 VTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEE-NM-HRY--QKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQL 190 (227)
T ss_dssp EEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHH-HH-HHH--HHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGC
T ss_pred eeecCcccHHHHhccCCceEEEEEEcCCcchHHH-HH-HHH--HHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccC
Confidence 4455666655554444455656666777777766 32 333 224444555666665677655666788999997 79
Q ss_pred cEEEEEeCCCCceeEEE-ecCCChHHHHHHHHhhhh
Q 013325 242 PVVLVVDPITGQKMRSW-CGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 242 P~l~ii~p~tg~~~~~~-~G~~~~~~~l~~L~~~~~ 276 (445)
|.++|++...+.. ..+ .|.++++.+...+..+++
T Consensus 191 P~~~i~~~~~~~k-y~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 191 PALAIYQTLDDEW-DTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp SEEEEEESSSCCE-EEETTCCCCHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCcc-ccCCcCCCCHHHHHHHHHHHhC
Confidence 9999999764432 233 366888888877777664
No 282
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.00 E-value=0.031 Score=38.52 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=33.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
++.|.+++++ |-+.+.|+..|.++| |+|.|++..|++
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4589999999 999999999999997 999999998874
No 283
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.00 E-value=0.12 Score=39.09 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=55.1
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
...|.||..+|+.+.-....++||..|..-+.... +.+....+|+.. .+. | ..+.||+++|+.+ ++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~-gi~~~~qrL~~~--G~~--L--~d~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CCCcccEEEEEC--CEE--e--CCCCCHHHcCCCCCCEEEEE
Confidence 46899999999999999999999999999988763 556667777654 553 4 4568999999984 555543
No 284
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.99 E-value=0.18 Score=40.79 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=55.4
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
+...+|.||..+|+ +.-.+..++||..|...|.... +......+|+.. .+. | +.++||.++|+.+ .+|.|.
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHH-TCCTTTEEEEET--TEE--C--CTTSCHHHHTCCTTEEEEEE
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence 56789999999996 7889999999999999998764 556677788754 443 4 4578999999984 555554
No 285
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=94.99 E-value=0.088 Score=41.09 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=55.3
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...|.++..+|+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBSGGGTCCTTCEEEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 35789999999999999999999999999998864 556677788753 443 4 347999999998 4666554
No 286
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=94.97 E-value=0.14 Score=43.75 Aligned_cols=88 Identities=5% Similarity=0.078 Sum_probs=56.4
Q ss_pred CCeEEEEEe-CCCCcchhhhhhhcccCChhHHHH---h-hccEEEEEeecCChhH-------------------HHHHHH
Q 013325 180 DKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQT---I-STNFIFWQVYDDTSEG-------------------KKVCTY 235 (445)
Q Consensus 180 ~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~---l-~~~FV~~~~~~~s~eg-------------------~~~~~~ 235 (445)
++|++|++. .++|..|.. . -+.+.++ + ... .++.++.++++. ..++..
T Consensus 35 ~~~vvl~f~~~~~c~~C~~-~------~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 106 (159)
T 2a4v_A 35 NRVVVFFVYPRASTPGSTR-Q------ASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGL 106 (159)
T ss_dssp CSEEEEEECSSSSSHHHHH-H------HHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHH
T ss_pred CCeEEEEEcCCCCCCCHHH-H------HHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 458899886 788998866 2 1223222 2 234 555556665432 235667
Q ss_pred cCCCCCc------EEEEEeCCCCceeEEEecCCC---hHHHHHHHHhhhhc
Q 013325 236 YKLDSIP------VVLVVDPITGQKMRSWCGMVQ---PESLLEDLVPFMDG 277 (445)
Q Consensus 236 y~v~~~P------~l~ii~p~tg~~~~~~~G~~~---~~~~l~~L~~~~~~ 277 (445)
|++...| +.+|| + .|.++..+.|... .+.+++.|...++.
T Consensus 107 ~gv~~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~ 155 (159)
T 2a4v_A 107 LGAKKTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK 155 (159)
T ss_dssp HTCBSSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCcccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHHH
Confidence 8887777 77777 5 7999998888643 46677777776653
No 287
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.96 E-value=0.074 Score=42.13 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=54.7
Q ss_pred CCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 364 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
.+...+|.|+.. |+.+.-++..++||..|..-|.... +......+|+.. .+. | +.++||.++|+.+ ++|.+
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l 85 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYL-HCNADRLVLIFT--GKI--L--RDQDILSQRGILDGSTVHV 85 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHT-CSCTTTBCCEET--TEE--C--CTTSCHHHHTCCTTEEEEC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CEE--C--CCcCCHHHCCCCCCCEEEE
Confidence 346789999998 9999999999999999999998863 555556666643 443 4 4578999999985 55544
Q ss_pred E
Q 013325 443 T 443 (445)
Q Consensus 443 ~ 443 (445)
.
T Consensus 86 ~ 86 (96)
T 1wx8_A 86 V 86 (96)
T ss_dssp C
T ss_pred E
Confidence 3
No 288
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.93 E-value=0.14 Score=41.20 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=55.2
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...+|.|+.. |+.+.-.+..++||.+|..-|.... +.+....+|+.. ++. | +.++||.++|+. +++|.+.
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRF-KSHTDQLVLIFA--GKI--L--KDQDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--E--CTTCCTGGGTCCTTCEEEEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence 4689999999 8889999999999999999998864 556677778753 443 4 457899999998 4556554
No 289
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=94.93 E-value=0.094 Score=44.19 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=58.1
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCC-------------------------cccC
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGA-------------------------TKSL 422 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~-------------------------~~~l 422 (445)
=.|.||||||+..+-+-..+.+|..+...|...+.-+....|.|+...|.. ...|
T Consensus 12 r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 12 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred ccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 359999999999999999999999999998887644444568888755522 0001
Q ss_pred -------CCCcCCchhhcCCc-CceEEEEe
Q 013325 423 -------DYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 423 -------~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
..|.+.||.|-|+. +++|++.+
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 12458999999998 68888775
No 290
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=94.90 E-value=0.17 Score=41.34 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=57.1
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...+|.||.++|+.+.-.+..++||..|..-|.... +......+|+.. .+. | +.++||.++|+. +++|.+.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CSSCBTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCcccEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999999998864 556677888764 443 4 347999999998 5666654
No 291
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.88 E-value=0.14 Score=40.67 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
.....|.||.++| .+.-.+..++||..|..-|... .+.+....+|+. ..+. | .|..+||.++|+.+ ++|.++
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L-~D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-ENTPIKRMQLYY--SGIE--L-ADDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-SSSCTTTEEEEE--TTEE--E-CCTTSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCEE--C-CCCcccHHHCCCCCCCEEEEE
Confidence 3468899999999 7888999999999999999886 466677888874 4553 4 33338999999984 555554
No 292
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.87 E-value=0.21 Score=38.66 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=56.3
Q ss_pred CceEEEEECCCC-ceEEE-eeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 366 LLCRVGVRLPDG-RRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 366 ~~~~I~iRlP~G-~r~~r-rF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
...+|.||.++| +.+.- .+..++||.+|..-|... .+.+....+|+.. .+. | +.++||.++|+. +++|.+
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l 78 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-FDVRPECQRLFYR--GKQ--L--ENGYTLFDYDVGLNDIIQL 78 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-SCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTCEEEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-HCcChhhEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEEE
Confidence 568899999999 67888 599999999999999886 4666777888764 443 4 457999999998 566665
Q ss_pred Ee
Q 013325 443 TW 444 (445)
Q Consensus 443 ~~ 444 (445)
..
T Consensus 79 ~~ 80 (89)
T 1wy8_A 79 LV 80 (89)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 293
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=94.85 E-value=0.042 Score=51.96 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=57.5
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhH------------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg------------------------ 229 (445)
.+||+||++. ..+|+.|.. - -+.+.++. ..++.+++++.++.+.
T Consensus 90 kGK~vvL~F~~a~~cp~C~~-e------l~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D 162 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPT-E------IIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSD 162 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCH-H------HHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEEC
T ss_pred CCCeEEEEEECCCCCCchHH-H------HHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeC
Confidence 4799999998 788998876 2 13333332 3468888888877553
Q ss_pred --HHHHHHcCCC------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHh
Q 013325 230 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 273 (445)
Q Consensus 230 --~~~~~~y~v~------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~ 273 (445)
..++..|++. .+|.++|||+ .|.++..+.|. ...++++..|..
T Consensus 163 ~~~~va~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~a 217 (254)
T 3tjj_A 163 LTHQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQA 217 (254)
T ss_dssp TTSHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred cHHHHHHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence 1234455553 4799999996 68888777653 245666666544
No 294
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.80 E-value=0.12 Score=40.24 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=53.9
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChhHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998764 556667778763 332 4 448999999998 4666554
No 295
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.78 E-value=0.039 Score=38.75 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 10 ~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
-++.|++.|++ |-|.+.|++.|..++||+|.|.+.-.+.
T Consensus 9 ~e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 9 LSSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp SHHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 35579999999 9999999999999999999999988764
No 296
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=94.75 E-value=0.14 Score=41.96 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=56.9
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...+|.||..+|+.+.-++..++||..|-..|.... +.+....+|+. -.+. | +.++||.++|+. +++|.+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~--~Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCChHHEEEEE--CCEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 358899999999999999999999999999998864 55677778875 3443 4 457899999998 5666654
No 297
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=94.68 E-value=0.23 Score=43.37 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=27.0
Q ss_pred CCcEEEEEeCCCCceeEEEecC--CChHHHHHHHHhhh
Q 013325 240 SIPVVLVVDPITGQKMRSWCGM--VQPESLLEDLVPFM 275 (445)
Q Consensus 240 ~~P~l~ii~p~tg~~~~~~~G~--~~~~~~l~~L~~~~ 275 (445)
+-|.++|||| .|.++..+.|. .+.+++++.|...+
T Consensus 133 H~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 133 HGTSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp CCCEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred eeeEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence 3478999997 69999899885 45688888877654
No 298
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.67 E-value=0.15 Score=40.92 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+...+|.||..+|+ ..-.+..++||..|..-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTCEEEEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 45799999999996 7889999999999999998864 556677778753 443 4 457899999998 5666554
No 299
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=94.65 E-value=0.14 Score=42.18 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=56.0
Q ss_pred CceEEEEECCC----------CceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCC
Q 013325 366 LLCRVGVRLPD----------GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 435 (445)
Q Consensus 366 ~~~~I~iRlP~----------G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL 435 (445)
+.++|.|++|+ |+.+.-.+..++||..|..-|... .+.+....+|+.. .+. | +.+.||.++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~i 96 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNM 96 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-SSCCTTTEEEEET--TEE--E--CTTSBHHHHTC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-HCCChHHEEEEEC--CEE--C--CCCCCHHHCCC
Confidence 46999999996 778889999999999999999886 4666777788753 443 4 44789999999
Q ss_pred c-CceEEEE
Q 013325 436 A-NAMISVT 443 (445)
Q Consensus 436 ~-~~~v~v~ 443 (445)
. +++|.+.
T Consensus 97 ~~g~~i~lv 105 (115)
T 1we7_A 97 ASGAVIHLA 105 (115)
T ss_dssp CSSCEEEEE
T ss_pred CCCCEEEEE
Confidence 8 5666654
No 300
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.61 E-value=0.22 Score=39.57 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+....|-|+.+.|+.+.-.+.++|||..|-.-|..+. |.+...-+|... .+. | +...||++.|+.+ ++|-+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~-Gip~~qQrLif~--Gk~--L--kD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQI-GTQPNKIVLQKG--GSV--L--KDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHh-CCCHHHEEEEeC--CEE--c--cCcCCHHHcCCCCCCEEEE
Confidence 4589999999999999999999999999999998763 667778888764 343 4 4578999999985 55544
No 301
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.59 E-value=0.054 Score=38.44 Aligned_cols=42 Identities=5% Similarity=0.147 Sum_probs=37.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
..+|+++.++ +=+|.+.-+..|..+||||+.||+.-+..+.+
T Consensus 10 a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 10 AALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 3489999999 66799999999999999999999999886554
No 302
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.53 E-value=0.042 Score=41.81 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcC-CCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATS-WKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~-w~le~Av~~~~~~~~~ 53 (445)
++.|++.+++ |-+.+.|+..|..++ ||+|.|++..|+..+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 4589999999 999999999999998 5899999999997543
No 303
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.51 E-value=0.046 Score=38.07 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
++.+...+++=-.++..++++.|+.+|||++.||+...+..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 44666777776778999999999999999999999998863
No 304
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=94.50 E-value=0.074 Score=46.06 Aligned_cols=74 Identities=9% Similarity=-0.072 Sum_probs=43.8
Q ss_pred cCCeEEEEEe-CCCCcchh-hhhhhcccCChhHHHHh----hccEE-EEEeecCChhH---------------------H
Q 013325 179 QDKWLLVNLQ-STKEFSSH-MVLNRDTWANEAVSQTI----STNFI-FWQVYDDTSEG---------------------K 230 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~-~~~~rdv~~~~~V~~~l----~~~FV-~~~~~~~s~eg---------------------~ 230 (445)
.+||++|++. .++|..|. .-+ +.+.++. ..++. ++.++.++++. .
T Consensus 34 ~gk~vvl~f~~~~~c~~C~~~e~-------~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~ 106 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCSLKHV-------PGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSA 106 (162)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHH-------HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTS
T ss_pred CCCcEEEEEeCCCCCCCCCHHHH-------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCc
Confidence 5789999998 78999887 302 2222222 23455 55555555432 2
Q ss_pred HHHHHcCCC-----------CCcEEEEEeCCCCceeEEEecC
Q 013325 231 KVCTYYKLD-----------SIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 231 ~~~~~y~v~-----------~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
.+++.|++. ..|+.+||| .|.++..+.|.
T Consensus 107 ~~~~~~gv~~~~~~~g~~~~~~p~~~vid--~G~i~~~~~~~ 146 (162)
T 1tp9_A 107 TYTHALGLELDLQEKGLGTRSRRFALLVD--DLKVKAANIEG 146 (162)
T ss_dssp HHHHHTTCEEEETTTTSEEEECCEEEEEE--TTEEEEEEECS
T ss_pred hHHHHcCcccccccCCCCccceeEEEEEE--CCEEEEEEeeC
Confidence 344556553 268888887 67777666554
No 305
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=94.48 E-value=0.097 Score=45.33 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=45.5
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhH---------------------HHHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg---------------------~~~~~ 234 (445)
.+||++|++. ..+|..|.. - -+.+.++.+ .++.++.++.++++. ..++.
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~-e------~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 114 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCAT-S------VRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHS 114 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCH-H------HHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHH
T ss_pred CCCeEEEEEECCCCCCccHH-H------HHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHH
Confidence 4688888887 688888865 2 122333222 355555555554332 34555
Q ss_pred HcCCCC---------CcEEEEEeCCCCceeEEEec
Q 013325 235 YYKLDS---------IPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 235 ~y~v~~---------~P~l~ii~p~tg~~~~~~~G 260 (445)
.|++.. .|+.+|||+ .|.++..+.|
T Consensus 115 ~~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~ 148 (165)
T 1q98_A 115 QLGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV 148 (165)
T ss_dssp HTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred HhCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence 666532 489999995 6888888765
No 306
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=94.39 E-value=0.23 Score=44.79 Aligned_cols=85 Identities=15% Similarity=0.079 Sum_probs=55.4
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChhH---------------------HHHHH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCT 234 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~eg---------------------~~~~~ 234 (445)
.+|+++|++. +.+|..|.. .-+.+.++.+ .++.+++++.++.+. ..++.
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~-------e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 149 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAA-------SVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQ 149 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCH-------HHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHH
T ss_pred CCCcEEEEEECCCCCchhHH-------HHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHH
Confidence 5789999998 678998865 2244444444 367777777776543 23455
Q ss_pred HcCCC---------CCcEEEEEeCCCCceeEEEecC-----CChHHHHHHH
Q 013325 235 YYKLD---------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDL 271 (445)
Q Consensus 235 ~y~v~---------~~P~l~ii~p~tg~~~~~~~G~-----~~~~~~l~~L 271 (445)
.|++. ..|+++|||+ .|.++..+.|. .+.+++++.|
T Consensus 150 ~ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 150 AYGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL 199 (200)
T ss_dssp HTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred HhCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence 56653 2599999996 68888776543 3455666554
No 307
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.27 E-value=0.17 Score=39.19 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=56.3
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
-.+|-++..+|+.+.-.+..++||.+|..-|.... +.+....+|+.. ++ .+ .+.+.||.+.|+. +++|.+.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk--~l-L~D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQ-HIPVSKQTLIVD--GI--VI-LREDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGEEEEET--TE--EC-CCSSSBHHHHTCCTTSCEEEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CE--Ee-cCCcCCHHHcCCCCCCEEEEE
Confidence 57899999999999999999999999999998864 566777888753 43 21 2457999999998 5666554
No 308
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=94.17 E-value=0.29 Score=38.73 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=55.9
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...++|.|+-.+|+.+..+...+++|+.|++-+.... +.....++|+.. ++. + ..+.|.+++++. +.+|-|.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHh-CCCccceEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4578899999999999999999999999999776653 545566766654 443 3 567899999998 5666554
Q ss_pred e
Q 013325 444 W 444 (445)
Q Consensus 444 ~ 444 (445)
+
T Consensus 88 ~ 88 (93)
T 2d07_B 88 Q 88 (93)
T ss_dssp E
T ss_pred e
Confidence 4
No 309
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.16 E-value=0.048 Score=40.17 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=34.2
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
++|.+..+. ||+....|+..|+.+|||++.||...-..
T Consensus 11 ~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 478888899 99999999999999999999999887654
No 310
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.13 E-value=0.18 Score=40.02 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=52.0
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
....+|.|++ +|+.+.-.+..++||.+|..-|.... +.+...-+|+ |..+. | + +.||.++|+.+ .+|++
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~t-gip~~~QrL~--~~Gk~--L--d-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSIT-GLPPAMQKVM--YKGLV--P--E-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHH-CSCSTTCCCB--SSSBC--C--S-SSBHHHHCCCTTEEEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEE--ECCee--C--C-cCcHHHCCCCCCCEEEE
Confidence 4568899996 58888999999999999999998864 5555666666 55654 4 3 34999999985 44544
No 311
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.16 Score=41.10 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=53.8
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
.+|.||..+|+.+.-.+..++||.+|-..|... .+......+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-ISCEESQIKLIYS--GKV--L--QDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-TTSCGGGCEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCChhhEEEEEC--CEE--C--CCcCCHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999999885 3556666777753 443 4 347999999998 5666554
No 312
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.05 E-value=0.096 Score=37.98 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=35.0
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
+.|+++.++=-+.|.++.+..|++|++|+|.||+..++....
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 356666666566799999999999999999999999997543
No 313
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=93.99 E-value=0.03 Score=54.09 Aligned_cols=89 Identities=11% Similarity=0.074 Sum_probs=56.8
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecC-C-hhHHHHHHHcCCCCCcE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDD-T-SEGKKVCTYYKLDSIPV 243 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~-s-~eg~~~~~~y~v~~~P~ 243 (445)
.+..+.++....++.. +|.+..+||..|+. +. .+|..-. +.+-...++.+ . .+...+++.|++..+|+
T Consensus 185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~-l~-p~le~lA------~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT 254 (291)
T 3kp9_A 185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQD-QK-ELFGAAF------DQVPYVECSPNGPGTPQAQECTEAGITSYPT 254 (291)
T ss_dssp CCSTHHHHHHHHHHTT--CEEEECTTCHHHHH-HH-HHHGGGG------GGSCEEESCSSCSSSCCCHHHHTTTCCSTTE
T ss_pred CCHHHHHHHHHhCCCC--EEEEECCCCHHHHH-HH-HHHHHHH------HHcCEEEEeecCchhhHHHHHHHcCCcccCe
Confidence 3555555555555554 68889999999998 63 2333211 22223334422 2 23567899999999999
Q ss_pred EEEEeCCCCceeEEEecCCChHHHHHHH
Q 013325 244 VLVVDPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 244 l~ii~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
+.+ +|+. +.|..+.+++.+.+
T Consensus 255 ~~i----~G~~---~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 255 WII----NGRT---YTGVRSLEALAVAS 275 (291)
T ss_dssp EEE----TTEE---EESCCCHHHHHHHT
T ss_pred EEE----CCEE---ecCCCCHHHHHHHH
Confidence 655 4763 78988888776544
No 314
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.96 E-value=0.47 Score=38.42 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...++|.|+-.+|+.+..+...+++|..|++.+.... +.....++|+-. .+. + ..+.|.+++++. +.+|-|.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHH-TCCTTTSCEESS--SSB--C--CTTSCTTTTTCCTTEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4578999999999999999999999999999766543 444556655543 443 3 567899999998 5656554
Q ss_pred e
Q 013325 444 W 444 (445)
Q Consensus 444 ~ 444 (445)
+
T Consensus 95 ~ 95 (104)
T 1wz0_A 95 Q 95 (104)
T ss_dssp C
T ss_pred E
Confidence 3
No 315
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=93.96 E-value=0.27 Score=39.39 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCCceEEEEECCCCceEEE--eeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCC-c-Cce
Q 013325 364 RSLLCRVGVRLPDGRRMQR--NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL-A-NAM 439 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~r--rF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL-~-~~~ 439 (445)
.++..+|-||..+|+.+.- .+..++||..|-.-|.....+.+...-+|+.. ++. | +.+.||.++|+ . +++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~g~t 89 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANST 89 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET--TEE--E--CTTCBGGGSCCBTTBCE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC--CEE--C--cCcCCHHHcCcCCCCCE
Confidence 3457899999999997665 56799999999999933345667777888853 443 4 45789999999 6 566
Q ss_pred EEEE
Q 013325 440 ISVT 443 (445)
Q Consensus 440 v~v~ 443 (445)
|++.
T Consensus 90 i~lm 93 (98)
T 4a20_A 90 ITVM 93 (98)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 316
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=93.95 E-value=0.16 Score=40.87 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCceEEEEECCCCc--eEEEeeCCCCchHHHHHHHHhhcCCCC-CcCeEEEcCCCCCcccCCCCcCCchhhc--CCcC-c
Q 013325 365 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSE-MKPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-A 438 (445)
Q Consensus 365 ~~~~~I~iRlP~G~--r~~rrF~~~d~l~~l~~fv~~~~~~~~-~~~f~L~~~fPr~~~~l~~~~~~Tl~e~--gL~~-~ 438 (445)
+..+.|.||.++|+ .+.-....++||..|-.-|....++.. ....+|+.. +|. | +.+.||.+. |+.+ +
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~--Gk~--L--~D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS--GRL--L--PDHLQLKDILRKQDEYH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET--TEE--E--CTTSBTHHHHTTTCSEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC--CEE--C--CCCCCHHHHhcCCCCCC
Confidence 45689999999998 455566999999999999998654433 366777753 553 4 457899999 9985 4
Q ss_pred eEEE
Q 013325 439 MISV 442 (445)
Q Consensus 439 ~v~v 442 (445)
+|.+
T Consensus 95 tihL 98 (99)
T 2kdb_A 95 MVHL 98 (99)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 317
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.88 E-value=0.16 Score=41.28 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=56.1
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCC---------------CcCeEEEcCCCCCcccCCCCcCCch
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSE---------------MKPFRLTHAIPGATKSLDYDSKLTF 430 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~---------------~~~f~L~~~fPr~~~~l~~~~~~Tl 430 (445)
...+|-|+.-+|+.+.-....++||.+|-.-|.... +.. ...|.|+ |..+. | .+.++||
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~-~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~--L-~dD~~tL 79 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYV-QLKQEREGGVQHISWSYVWRTYHLT--SAGEK--L-TEDRKKL 79 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTTCCCCCCHHHHHTTEEEE--SSSCE--E-CCSSSBH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccccCcceeeeeecceeEEEE--eCCcC--c-cCCcCCH
Confidence 458899999999999999999999999999988763 111 1468898 56764 4 3567999
Q ss_pred hhcCCcC-ceEEEE
Q 013325 431 EDSGLAN-AMISVT 443 (445)
Q Consensus 431 ~e~gL~~-~~v~v~ 443 (445)
++.|+.+ ++|.++
T Consensus 80 ~dygI~~g~~l~lv 93 (105)
T 1v2y_A 80 RDYGIRNRDEVSFI 93 (105)
T ss_dssp HHHTCCSSEEEEEE
T ss_pred HHcCCCCCCEEEEE
Confidence 9999984 656554
No 318
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.3 Score=40.11 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=57.4
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+...|.++..+|+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.++||.++|+. +++|.+.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIWA--GKQ--L--EDGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 468999999999999999999999999999998864 666777888754 443 4 457999999998 5666554
No 319
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.80 E-value=0.23 Score=43.65 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=57.0
Q ss_pred CCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 364 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
.+....|.||..+|+.+.-+...++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~QrL~~~--g~~--L--~d~~tL~~~~i~~~~~l~l 89 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL 89 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEEC--Ccc--c--cccCCHhHcCCcccceeee
Confidence 34578999999999999999999999999999998864 666667778753 443 4 457899999998 566655
Q ss_pred E
Q 013325 443 T 443 (445)
Q Consensus 443 ~ 443 (445)
.
T Consensus 90 ~ 90 (172)
T 3u30_A 90 V 90 (172)
T ss_dssp E
T ss_pred e
Confidence 4
No 320
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=93.79 E-value=0.11 Score=47.39 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=58.2
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc--EEEEEeec-------------------------------
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN--FIFWQVYD------------------------------- 224 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~--FV~~~~~~------------------------------- 224 (445)
..+|+.+|.+.+++|..|+. +.. .+.++.+.+ +++..+..
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~-~~~------~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~ 156 (216)
T 1eej_A 84 PQEKHVITVFTDITCGYCHK-LHE------QMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGK 156 (216)
T ss_dssp TTCCEEEEEEECTTCHHHHH-HHT------THHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTC
T ss_pred CCCCEEEEEEECCCCHHHHH-HHH------HHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCC
Confidence 35789999999999999998 643 345555432 33332221
Q ss_pred ---------CChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 225 ---------DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 225 ---------~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.-.+...+++.|++..+|+++|.+ |. .+.|..++++|...|.....
T Consensus 157 ~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~~ 211 (216)
T 1eej_A 157 SVAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQK 211 (216)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhhh
Confidence 112345678889999999995434 53 46799899888887776543
No 321
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=93.77 E-value=0.25 Score=39.32 Aligned_cols=76 Identities=8% Similarity=0.022 Sum_probs=57.4
Q ss_pred CCceEEEEECCCCc--eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcc-cCCCCcCCchhhcCCcC-ceE
Q 013325 365 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATK-SLDYDSKLTFEDSGLAN-AMI 440 (445)
Q Consensus 365 ~~~~~I~iRlP~G~--r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~-~l~~~~~~Tl~e~gL~~-~~v 440 (445)
++.++|.|+.++++ .+.++|..++||..|-.-|... .|.+...-+|+...+.+.. .+ .+.++||.+.|+.+ ++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-~GiP~~~QrL~~~~~g~~~~~L-~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-TGGCAGTMKVQVFKGDTCVSTM-DNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-HCSCTTTEEEEEEETTEEEEEC-CCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-HCcCHHHeEEEEecCCccccee-CCCCCCHhHCCcCCCCEE
Confidence 46889999998885 7999999999999999999886 4666777778765433310 12 35689999999985 555
Q ss_pred EE
Q 013325 441 SV 442 (445)
Q Consensus 441 ~v 442 (445)
.|
T Consensus 91 hl 92 (95)
T 2kjr_A 91 HV 92 (95)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 322
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.24 Score=38.73 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=55.2
Q ss_pred eEEEEECCCCceEEEe--eCCCCchHHHHHHH-HhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCC--cCceEEE
Q 013325 368 CRVGVRLPDGRRMQRN--FLRTDPIQLLWSYC-YSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL--ANAMISV 442 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rr--F~~~d~l~~l~~fv-~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL--~~~~v~v 442 (445)
..|-||..+|+.+.-. +..++||..|-.-| .. ..+.+....+|+.. ++. | +.+.||.++|+ .+++|.|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~-~~gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISE-EKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHT-TSCSSSTTEEEEET--TEE--C--CTTCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHH-hcCCChHHEEEEEC--CEE--C--cCcCCHHHcCCCCCCCEEEE
Confidence 4788999999987766 55999999999999 55 45777788888853 553 4 45789999999 3688877
Q ss_pred Ee
Q 013325 443 TW 444 (445)
Q Consensus 443 ~~ 444 (445)
.+
T Consensus 75 ~~ 76 (87)
T 2lxa_A 75 MI 76 (87)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 323
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=93.68 E-value=0.22 Score=48.66 Aligned_cols=87 Identities=10% Similarity=0.190 Sum_probs=58.0
Q ss_pred cCCeEEEEEeC-CCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhH-------------------HHHHHH
Q 013325 179 QDKWLLVNLQS-TKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEG-------------------KKVCTY 235 (445)
Q Consensus 179 ~~K~LlV~l~~-~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg-------------------~~~~~~ 235 (445)
.|||++||++- .+++.|.. ++..|-+ +++.+++++.|+.+. ..+++.
T Consensus 23 ~Gk~vvl~F~p~~~tp~C~~----------e~~~~~~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ 92 (322)
T 4eo3_A 23 YGKYTILFFFPKAGTSGSTR----------EAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEF 92 (322)
T ss_dssp TTSEEEEEECSSTTSHHHHH----------HHHHHHHSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHH
T ss_pred CCCeEEEEEECCCCCCCCHH----------HHHHHHHHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHh
Confidence 47899999873 34554532 2222322 467788888877665 234567
Q ss_pred cCC----CCCcEEEEEeCCCCceeEEEecCC---ChHHHHHHHHhhhh
Q 013325 236 YKL----DSIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVPFMD 276 (445)
Q Consensus 236 y~v----~~~P~l~ii~p~tg~~~~~~~G~~---~~~~~l~~L~~~~~ 276 (445)
|++ ..+|+.+|||+ .|.+...|.+.. .++++|..|..+..
T Consensus 93 ygv~~~~~~~r~tfiId~-~G~i~~~~~~v~~~~h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 93 FNVLENGKTVRSTFLIDR-WGFVRKEWRRVKVEGHVQEVKEALDRLIE 139 (322)
T ss_dssp TTCEETTEECCEEEEECT-TSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCccEEEEECC-CCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence 777 35789999996 699888888743 35778887777754
No 324
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.65 E-value=0.4 Score=37.44 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=54.1
Q ss_pred CceEEEEECCCCceEEEeeCCC-----CchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ce
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRT-----DPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AM 439 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~-----d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~ 439 (445)
...+|.|+.. |+.+...+..+ +||.+|..-|... .+.+...-+|+.. .+. | .|.++||.++|+.+ .+
T Consensus 6 ~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-~gip~~~qrL~~~--Gk~--L-~D~~~~L~~~~i~~g~~ 78 (92)
T 1wxv_A 6 SGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEV-IGVPQSFQKLIFK--GKS--L-KEMETPLSALGIQDGCR 78 (92)
T ss_dssp SSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--E-CCSSSBHHHHTCCSSEE
T ss_pred CeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHH-HCcCHHHEEEEEC--Cee--c-CCCcccHHHCCCCCCCE
Confidence 4688999984 77888899985 9999999999876 3666677778743 443 4 35578999999984 55
Q ss_pred EEEE
Q 013325 440 ISVT 443 (445)
Q Consensus 440 v~v~ 443 (445)
|++.
T Consensus 79 i~l~ 82 (92)
T 1wxv_A 79 VMLI 82 (92)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 325
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.63 E-value=0.087 Score=41.10 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=36.5
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHc-CCCHHHHHHHHhcCCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQAT-SWKLDEAIQLFYVGNES 53 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~-~w~le~Av~~~~~~~~~ 53 (445)
++.|++.+++ |-+...|++.|..+ |||++.|++..|++.+.
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5589999999 99999999999988 59999999999997543
No 326
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=93.62 E-value=0.3 Score=41.59 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=56.3
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...|.|+..+|+.+...+..++||..|..-+.... +.+.....|+. .++. | +.+.||.+.|+. +++|.+.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHh-CcChhhEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 47889999999999999999999999999998764 56677888874 3553 4 457999999998 5666554
No 327
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=93.57 E-value=0.21 Score=46.17 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=56.2
Q ss_pred cCCeEEEEEe-CCCCcchh-hhhhhcccCChhHHHH----hhccE-EEEEeecCChhH-H-------------------H
Q 013325 179 QDKWLLVNLQ-STKEFSSH-MVLNRDTWANEAVSQT----ISTNF-IFWQVYDDTSEG-K-------------------K 231 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~-~~~~rdv~~~~~V~~~----l~~~F-V~~~~~~~s~eg-~-------------------~ 231 (445)
.+||++||+. .+||..|. . - -+.+.++ -..++ .+++++.++.+. . .
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~-e------~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~ 104 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSS-H------LPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGE 104 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHT-H------HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSH
T ss_pred CCCeEEEEEeCCCCCCCCCHH-H------HHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcH
Confidence 5789999998 89999998 4 1 1333332 23467 777777776543 1 2
Q ss_pred HHHHcCCC-----------CCcEEEEEeCCCCceeEEEecC---------CChHHHHHHHHh
Q 013325 232 VCTYYKLD-----------SIPVVLVVDPITGQKMRSWCGM---------VQPESLLEDLVP 273 (445)
Q Consensus 232 ~~~~y~v~-----------~~P~l~ii~p~tg~~~~~~~G~---------~~~~~~l~~L~~ 273 (445)
+++.|++. ..|+.+|| + .|.++..+.|. .++++++..|..
T Consensus 105 ~~~~~gv~~~~~~~g~~~~~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~ 164 (241)
T 1nm3_A 105 FTEGMGMLVGKEDLGFGKRSWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP 164 (241)
T ss_dssp HHHHTTCEEECTTTTCCEEECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred HHHHhCceeecccccCcccceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence 34455553 34888888 5 79888888774 356777776654
No 328
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=93.55 E-value=0.56 Score=38.12 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 364 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
....+.|.|+- +|+.+..+...+++|+.|++-..... +.....++|.-. ++. + ..+.|.+++++. +.+|-|
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~-gi~~~~~rF~Fd--G~r--l--~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CeE--c--CCCCCHHHcCCCCCCEEEE
Confidence 34678899998 99999999999999999998876543 555567766654 443 3 467899999998 555554
Q ss_pred E
Q 013325 443 T 443 (445)
Q Consensus 443 ~ 443 (445)
.
T Consensus 100 ~ 100 (106)
T 2eke_C 100 H 100 (106)
T ss_dssp E
T ss_pred E
Confidence 4
No 329
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=93.55 E-value=0.21 Score=46.42 Aligned_cols=91 Identities=5% Similarity=-0.019 Sum_probs=59.0
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecC------------------------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDD------------------------------ 225 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~------------------------------ 225 (445)
..|..++.+.+.+|..|.. |.. .+..++++. |++..+..-
T Consensus 96 ~ak~~v~~F~D~~Cp~C~~-~~~------~l~~~~~~g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~ 168 (241)
T 1v58_A 96 DAPVIVYVFADPFCPYCKQ-FWQ------QARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGK 168 (241)
T ss_dssp TCSEEEEEEECTTCHHHHH-HHH------HHHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTC
T ss_pred CCCeEEEEEECCCChhHHH-HHH------HHHHHHhCCcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence 4677888899999999998 643 455566542 332222210
Q ss_pred ---------Ch-------hHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 226 ---------TS-------EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 226 ---------s~-------eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+. +...+++.|++..+|+++|.+. +|+. ..+.|..+++.|...|......+
T Consensus 169 ~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~-~G~~-~~~~G~~~~~~L~~~l~~~~~~~ 235 (241)
T 1v58_A 169 LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENTL-QQAVGLPDQKTLNIIMGNKLQHH 235 (241)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTEE-EEEESSCCHHHHHHHTTC-----
T ss_pred CCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCCE-EEecCCCCHHHHHHHHHHHHHhh
Confidence 01 1234567899999999999874 5754 57889999998888777766644
No 330
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=93.40 E-value=0.55 Score=37.01 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=55.1
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
..++|.|+..+|+.+..+...+++++.|++-.... .+.....++|+-. ++. + ..+.|.+++++. +.+|-|.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-~gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 75 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-QGLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 75 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-TTCCSTTEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-hCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 46889999999999999999999999999887665 3556667777654 443 3 567899999998 5656554
No 331
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=93.33 E-value=0.32 Score=42.25 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
...+..+++..+|+++| +|+ .+.|..+.+.|...|...+.
T Consensus 134 ~~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 134 MALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp HHHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHHHHHHHHh
Confidence 34567899999999886 354 56799999999888877764
No 332
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=93.33 E-value=0.31 Score=41.49 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=54.1
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+|.||.++|+.+.-++..++||.+|..-+.... +.+.....|+.. .+. + +.+.||.+.|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~L~~~--g~~--L--~d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHeEEEEC--CeE--C--cCcccHHHhccCCCCeeEEE
Confidence 588999999999999999999999999998864 556667777753 443 4 457999999998 5666554
No 333
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=93.29 E-value=0.47 Score=37.59 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+..++|.|+-.+|+.+..+...+++|..|++-+.... +.....++|+-. .+. + +.+.|.+++++. +.+|-|.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 3468899999999999999999999999998876653 555667777654 443 3 567899999998 5666554
Q ss_pred e
Q 013325 444 W 444 (445)
Q Consensus 444 ~ 444 (445)
.
T Consensus 78 ~ 78 (94)
T 2io1_B 78 Q 78 (94)
T ss_dssp E
T ss_pred E
Confidence 3
No 334
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=93.24 E-value=0.46 Score=39.81 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcC-----CC--CCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE-----GS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~-----~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
.....|.||+.+|+++.-.+..++||..|-.-|....+ +. .....+|+.. +|. | +.+.||.+.|+.
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~--GK~--L--eD~~TL~~y~I~ 87 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLP 87 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS--SSE--E--ESSCBTGGGCCC
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCC
Confidence 44689999999999999999999999999999987432 22 2456777765 554 4 457899999997
No 335
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=93.15 E-value=0.27 Score=45.66 Aligned_cols=88 Identities=10% Similarity=0.022 Sum_probs=56.7
Q ss_pred CC-eEEEEEe-CCCCcchhhhhhhcccCChhHHH----HhhccEEEEEeecCChhH------------------------
Q 013325 180 DK-WLLVNLQ-STKEFSSHMVLNRDTWANEAVSQ----TISTNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 180 ~K-~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~----~l~~~FV~~~~~~~s~eg------------------------ 229 (445)
+| |++|+++ .++|+.|.. - -+.+.+ |-+.++-++++++++.+.
T Consensus 28 Gk~~vvL~f~pa~~cpvC~~-e------l~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~ 100 (233)
T 2v2g_A 28 GNSWGVLFSHPRDFTPVSTT-E------LGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIA 100 (233)
T ss_dssp CSSEEEEEECSCSSCHHHHH-H------HHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEE
T ss_pred CCCeEEEEEECCCCCCCcHH-H------HHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEE
Confidence 45 9999998 788998866 2 122322 223467777777776542
Q ss_pred ---HHHHHHcCCC------------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHhhh
Q 013325 230 ---KKVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM 275 (445)
Q Consensus 230 ---~~~~~~y~v~------------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~~~ 275 (445)
..+++.|++. .+|.++|||| .|.+...+.|. .+.++++..|....
T Consensus 101 D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~Lq 164 (233)
T 2v2g_A 101 DETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSLQ 164 (233)
T ss_dssp CTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHhCCcCcccccCCCcccccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 1234445552 4799999997 58887777653 25677777766543
No 336
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=93.09 E-value=0.73 Score=38.62 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=51.5
Q ss_pred CceEEEEECCCCceE-EEeeCCCCchHHHHHHHHhhcC----CCCC--cCeEEEcCCCCCcccCCCCcCCchhhcCCcCc
Q 013325 366 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE----GSEM--KPFRLTHAIPGATKSLDYDSKLTFEDSGLANA 438 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~-~rrF~~~d~l~~l~~fv~~~~~----~~~~--~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~ 438 (445)
....|.||+.+|+.+ .-.|..++||..|-.-|....+ +.+. ..-+|+.. +|. | +.+.||.+.++...
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~--GK~--L--eD~~TLsdy~I~~~ 88 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKV--L--ENSKTVKDYRSPVS 88 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEE--C--CTTSBGGGGSCCTT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC--CeE--C--cCCCcHHHcCCCcC
Confidence 578999999999888 6999999999999999976542 2222 45667664 453 4 56799999999843
No 337
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.92 E-value=0.53 Score=36.83 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=53.2
Q ss_pred CceEEEEECCCCc--eEEEeeCCCCchHHHHHHHHhhcC-CCCCcCeEEEcCCCCCcccCCCCcCCchhhc--CCcC-ce
Q 013325 366 LLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLE-GSEMKPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-AM 439 (445)
Q Consensus 366 ~~~~I~iRlP~G~--r~~rrF~~~d~l~~l~~fv~~~~~-~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~--gL~~-~~ 439 (445)
...+|.||.++|+ .+.-....++||.+|..-|....+ +......+|+.. .+. | +.+.||.++ |+.+ ++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~--Gk~--L--~D~~tL~~~~~~i~~~~~ 79 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS--GKL--L--LDHQCLRDLLPKQEKRHV 79 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET--TEE--C--CSSSCHHHHSCSSSCSEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC--CEE--C--cCcCCHHHHhcCCCCCCE
Confidence 4589999999998 444455699999999999988642 556677788753 553 4 346899999 9984 55
Q ss_pred EEEE
Q 013325 440 ISVT 443 (445)
Q Consensus 440 v~v~ 443 (445)
|.++
T Consensus 80 i~lv 83 (93)
T 1wgd_A 80 LHLV 83 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 338
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=92.80 E-value=0.5 Score=38.64 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=54.7
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
...++|.|+..+|+.+..+...+++|+.|++-+.... +.....++|+.. .+. + ..+.|.+++++-. .+|-|.
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~-gi~~~~~rfiFd--G~~--L--~~~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQ-GISRNSVRFLFD--GTP--I--DETKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHH-TCCSSSCEEESS--SCB--C--CSSSHHHHHHCSSEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 3568999999999999999999999999998766543 555566666653 443 3 5678999999984 555443
No 339
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=92.79 E-value=0.02 Score=54.18 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=0.0
Q ss_pred CChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 5 l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
|+..+ ..+|.+|+.. ||...+-|..+|+.+|||++.|+..|-+...
T Consensus 194 ~~~~q-~~~v~~~~~~-T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 239 (250)
T 1jkg_B 194 LSPEQ-QEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 239 (250)
T ss_dssp ------------------------------------------------
T ss_pred CCHHH-HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33434 4599999999 9999999999999999999999999988543
No 340
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=92.74 E-value=0.39 Score=37.12 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=50.5
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
.+.+.+. .+|+.+.-.+..++||.+|..-|.... +.+....+|+. -++. | +.++||.++|+.+ ++|.+.
T Consensus 12 ~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~--~Gk~--L--~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 12 TIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPIT-NVLPRGQKLIF--KGKV--L--VETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHH-CCCTTTCEEEE--TTEE--C--CTTCBTTTTTCCTTEEEEEE
T ss_pred cEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEE--CCeE--C--CCcCCHHHCCCCCCCEEEEE
Confidence 3444444 478888899999999999999998764 55667777874 3543 4 4578999999985 555543
No 341
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.71 E-value=0.35 Score=38.73 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=53.9
Q ss_pred CceEEEEECCCC----ceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceE
Q 013325 366 LLCRVGVRLPDG----RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 440 (445)
Q Consensus 366 ~~~~I~iRlP~G----~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v 440 (445)
...+|.|+.++| +.+.-.+..++||.+|..-|... .+......+|+.. .+. | .|..+||.++|+.+ ++|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--gk~--L-~D~~~tL~~ygI~~g~~l 79 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-SGVPAEEAQIVYM--EQL--L-TDDHCSLGSYGLKDGDMV 79 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-TCCCGGGBCEEET--TEE--E-CCSSSBHHHHTCCTTEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-HCcChHHeEEEEC--CEE--C-CCCcccHHHCCCCCCCEE
Confidence 457889999866 57788899999999999999886 4556667777754 343 4 35568999999985 555
Q ss_pred EEE
Q 013325 441 SVT 443 (445)
Q Consensus 441 ~v~ 443 (445)
+|.
T Consensus 80 ~l~ 82 (102)
T 1v5o_A 80 VLL 82 (102)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 342
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=92.50 E-value=0.42 Score=37.54 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=52.3
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...+|.||. |+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.++||.++|+. +++|.+.
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLE-GIAPEDQVVLLA--GAP--L--EDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHH-TCCGGGCEEEET--TEE--C--CTTSBHHHHTCCSSCEEEEE
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHh-CcChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 346778887 8889899999999999999998864 556677778754 443 4 457999999998 5666654
No 343
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.52 Score=43.33 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=60.5
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH--------------------------HH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KK 231 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg--------------------------~~ 231 (445)
.+||+++|++ .++++.|..-++ --++...+|-+.++.+++++.|+... ..
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~E~~---~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~ 127 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPTEII---AFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHS 127 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH---HHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSH
T ss_pred CCCeEEEEEEcCCCCCcCchhhh---HHHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCH
Confidence 4799999999 678888866121 11233344555689999999988654 24
Q ss_pred HHHHcCC------CCCcEEEEEeCCCCceeEEEec----CCChHHHHHHHHhh
Q 013325 232 VCTYYKL------DSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPF 274 (445)
Q Consensus 232 ~~~~y~v------~~~P~l~ii~p~tg~~~~~~~G----~~~~~~~l~~L~~~ 274 (445)
+++.|++ -.++.++|||| .|.+...+.. .-+.+++|..|..+
T Consensus 128 vak~YGv~~~~~g~~~R~tFiID~-~G~Ir~~~v~~~~~grn~dEiLr~l~Al 179 (216)
T 3sbc_A 128 LSRDYGVLIEEEGVALRGLFIIDP-KGVIRHITINDLPVGRNVDEALRLVEAF 179 (216)
T ss_dssp HHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHcCCeeccCCceeeEEEEECC-CCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 5677776 14688999997 4765444322 13678888766543
No 344
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.21 E-value=0.5 Score=38.20 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=53.8
Q ss_pred CceEEEEECCCC---ceEEEeeCC---------CCchHHHHHHHHhhcC-CCCCcC-eEEEcCCCCCcccCCCCcCCchh
Q 013325 366 LLCRVGVRLPDG---RRMQRNFLR---------TDPIQLLWSYCYSQLE-GSEMKP-FRLTHAIPGATKSLDYDSKLTFE 431 (445)
Q Consensus 366 ~~~~I~iRlP~G---~r~~rrF~~---------~d~l~~l~~fv~~~~~-~~~~~~-f~L~~~fPr~~~~l~~~~~~Tl~ 431 (445)
...+|.||..+| +.+.-.|.. ++||..|...|....+ +..... .+|+. -.+. | +.+.||.
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~--~Gk~--L--~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY--CGRK--L--KDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE--TTEE--C--CTTCBHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE--CCeE--C--CCCCcHH
Confidence 357899999999 778888766 6999999999988642 555666 77874 3553 4 4568999
Q ss_pred hcCCc-CceEEEE
Q 013325 432 DSGLA-NAMISVT 443 (445)
Q Consensus 432 e~gL~-~~~v~v~ 443 (445)
++|+. +++|.+.
T Consensus 85 ~y~i~~g~~i~lv 97 (107)
T 1x1m_A 85 FYGIQPGSTVHVL 97 (107)
T ss_dssp HHTCCTTCEEEEE
T ss_pred HcCCCCCCEEEEE
Confidence 99998 4566554
No 345
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=92.20 E-value=1.1 Score=34.05 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=52.3
Q ss_pred CceEEEEECCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEE
Q 013325 366 LLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 441 (445)
Q Consensus 366 ~~~~I~iRlP~G~-r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~ 441 (445)
..++|.|+-.+|+ .+..+...+++++.|++-..... +.....++|.-. ++. + ..+.|.+++++....++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-GLSGHKLSFFFD--GTK--L--SGKELPADLGLESGDLI 75 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHH-TCTTCCCEEEET--TEE--C--CSCCCHHHHTCCTTCEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEE
Confidence 4689999999996 89999999999999998876653 445556666653 443 3 56789999999854433
No 346
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=92.04 E-value=0.63 Score=40.11 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=55.3
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCC-CCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~f-Pr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
.+|.|+..+|+.+.-.+..++||.+|-.-|.... +.+...-+|+. | .++. | +.+.||.+.|+. +++|.+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~QrL~~-~~~g~~--L--~d~~tL~~y~i~~~~~l~l~ 74 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKI-GVHAFQQRLAV-HPSGVA--L--QDRVPLASQGLGPGSTVLLV 74 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHH-CCCGGGEEEEE-ETTCCB--C--CTTSCGGGGTCCTTCEEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCHHHEEEEE-cCCCCC--C--CCCCCHHHcCCCCCCEEEEE
Confidence 5788999999999999999999999999998864 66666777873 4 3453 4 568999999998 5666543
No 347
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=91.98 E-value=1.2 Score=33.23 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=50.7
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceE
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMI 440 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v 440 (445)
++|.|+-.+|+.+..+...+++++.|++-..... +.....++|.-. ++. + ..+.|.+++|+....+
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDT 67 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHH-TCCTTTCEEEET--TEE--C--CTTCCTTTTTCCTTEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCE
Confidence 5788999999999999999999999998876543 555566666654 443 3 5678999999985443
No 348
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.95 E-value=1.1 Score=37.01 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=52.0
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcC-----CC--CCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE-----GS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~-----~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
..+.|.||+.+|+++.-.+..++||..|-.-|....+ +. .....+|+.. +|. | +.+.||.++++.
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~--GK~--L--eD~~TL~~y~I~ 86 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLP 86 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET--TEE--E--CSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCC
Confidence 4689999999999999999999999999999987421 21 3567778765 553 4 457999999986
No 349
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.83 E-value=0.71 Score=34.57 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=36.5
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
+-+|.|..+||+..|...-.+.|+++++||..||.+.-+.+.
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~ 66 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNA 66 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 448999999955558999999999999999999999988654
No 350
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=91.08 E-value=0.031 Score=42.09 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=50.7
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+|.||.++|+.+.-.+..++||.+|..-+... .+.+.....|+. -.+. | +.+.||.++|+.+ ++|.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~--~gk~--L--~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-QGVPADQLRVIF--AGKE--L--PNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 57789999998888999999999999998875 355555666654 3443 4 4478999999984 55544
No 351
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=91.79 E-value=0.2 Score=41.99 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=36.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
+..|.+.+++ |.+.+.|+..|..++||++.|++..|++.+
T Consensus 79 e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 79 EEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5589999999 999999999999999999999999998655
No 352
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=91.74 E-value=0.96 Score=38.92 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=56.6
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...|.||.++|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.+.|+. +++|.+.
T Consensus 81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~q~L~~~--G~~--L--~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE-GVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHH-CCCHHHEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 47899999999999999999999999999998763 666778888863 443 4 447899999998 5666654
No 353
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=91.42 E-value=1.1 Score=46.28 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=58.5
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHH--hhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeE
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQT--ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 256 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~--l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~ 256 (445)
..+..++.+..+||.+|+. +.. .+.++ .+.+..+..++.+ +...++..|++.+.|+++| +|+.+.
T Consensus 116 ~~~~~i~~f~a~~C~~C~~-~~~------~l~~~a~~~~~v~~~~vd~~--~~~~~~~~~~i~svPt~~i----~g~~~~ 182 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPD-VVQ------ALNLMAVLNPRIKHTAIDGG--TFQNEITERNVMGVPAVFV----NGKEFG 182 (521)
T ss_dssp CSCEEEEEEECTTCSSHHH-HHH------HHHHHHHHCTTEEEEEEETT--TCHHHHHHTTCCSSSEEEE----TTEEEE
T ss_pred CCCcceEEEECCCCcCcHH-HHH------HHHHHHhHcCceEEEEEech--hhHHHHHHhCCCccCEEEE----CCEEEe
Confidence 4556677888999999998 532 22222 2336777766654 5567899999999999976 587764
Q ss_pred EEecCCChHHHHHHHHhh
Q 013325 257 SWCGMVQPESLLEDLVPF 274 (445)
Q Consensus 257 ~~~G~~~~~~~l~~L~~~ 274 (445)
. |..+.++++..|...
T Consensus 183 ~--G~~~~~~l~~~l~~~ 198 (521)
T 1hyu_A 183 Q--GRMTLTEIVAKVDTG 198 (521)
T ss_dssp E--SCCCHHHHHHHHCCS
T ss_pred c--CCCCHHHHHHHHhhc
Confidence 4 988999998887665
No 354
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=91.11 E-value=0.9 Score=41.83 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=59.5
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhH--------------------------HH
Q 013325 179 QDKWLLVNLQ-STKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KK 231 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg--------------------------~~ 231 (445)
.+||++||++ .++++-|..-+| --++...+|-+.++.+++++.|+... ..
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E~~---~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~ 131 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTEVI---AFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKN 131 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHH---HHHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSH
T ss_pred CCCEEEEEEecccCCCCCchhHh---hHHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccH
Confidence 4799999999 567887755121 11233445556689999999998654 23
Q ss_pred HHHHcCC----C--CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHhh
Q 013325 232 VCTYYKL----D--SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPF 274 (445)
Q Consensus 232 ~~~~y~v----~--~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~~ 274 (445)
+++.|++ . .+-.++|||| .|.+...+... -..+++|..|...
T Consensus 132 va~~yGv~~~~~g~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EvLr~l~aL 183 (219)
T 3tue_A 132 IARSYGVLEESQGVAYRGLFIIDP-HGMLRQITVNDMPVGRSVEEVLRLLEAF 183 (219)
T ss_dssp HHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHcCCcccCCCeeEEEEEEECC-CCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 5667776 1 2457889997 57665554321 3678888776544
No 355
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.03 E-value=0.39 Score=38.14 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=51.3
Q ss_pred CceEEEEECCCCceE-EEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 366 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~-~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
...+|.|++ .|+.+ .-.+..++||.+|..-|... .+.....-+|+ |.++. |. | + ||.++|+.+ ++|++
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-tgip~~~QkLi--~~Gk~--L~-D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-TGVQPARQKVM--VKGGT--LK-D-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-TCCCTTTSCCE--ETTEE--CC-S-S-CCCSCCCCSSCEEEC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEE--ECCcC--CC-C-C-CHHHCCCCCCCEEEE
Confidence 467888886 67778 48899999999999999886 46666666677 55654 53 3 4 999999984 55554
No 356
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=90.99 E-value=0.76 Score=42.63 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=55.2
Q ss_pred cCCeEEEEEeCCC--CcchhhhhhhcccCChhHHHHhh--cc------EEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013325 179 QDKWLLVNLQSTK--EFSSHMVLNRDTWANEAVSQTIS--TN------FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 179 ~~K~LlV~l~~~~--~f~~~~~~~rdv~~~~~V~~~l~--~~------FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~ 248 (445)
-.++++|.+..+| |..|.. + .+.+.++-+ .. ..|..++.+ +...++..|++..+|++.|++
T Consensus 24 ~~~pv~v~~~~~~~~c~~c~~-~------~~~l~ela~~~~~~~~~~~v~~~~vd~d--~~~~~~~~~gv~~~Pt~~i~~ 94 (243)
T 2hls_A 24 MVNPVEVHVFLSKSGCETCED-T------LRLMKLFEEESPTRNGGKLLKLNVYYRE--SDSDKFSEFKVERVPTVAFLG 94 (243)
T ss_dssp CCSCEEEEEEECSSSCTTHHH-H------HHHHHHHHHHSCEETTEESEEEEEEETT--TTHHHHHHTTCCSSSEEEETT
T ss_pred CCCCEEEEEEeCCCCCCchHH-H------HHHHHHHHHhccCCCCCceeEEEEecCC--cCHHHHHhcCCCcCCEEEEEC
Confidence 3578888888887 888887 4 222233222 12 444444543 456789999999999999882
Q ss_pred CCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 249 PITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 249 p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
| ..++.|..+..++...+..+++
T Consensus 95 ---g--~~~~~G~~~~~~l~~fv~~~l~ 117 (243)
T 2hls_A 95 ---G--EVRWTGIPAGEEIRALVEVIMR 117 (243)
T ss_dssp ---T--TEEEESCCCTTHHHHHHHHHHH
T ss_pred ---C--ceeEcCCCcHHHHHHHHHHHHh
Confidence 5 5567787666666666655554
No 357
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=90.65 E-value=0.52 Score=38.30 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=49.0
Q ss_pred EEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecC
Q 013325 183 LLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 183 LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
.++.+..++|..|+. +. +-+.++..+ .+-+..+|++.. ..++..|++. .|.|+++. +|+.+ ..|.
T Consensus 31 ~vv~y~~~~C~~C~~-a~------~~L~~l~~e~~i~~~~vDId~d--~~l~~~ygv~-VP~l~~~~--dG~~v--~~g~ 96 (107)
T 2fgx_A 31 KLVVYGREGCHLCEE-MI------ASLRVLQKKSWFELEVINIDGN--EHLTRLYNDR-VPVLFAVN--EDKEL--CHYF 96 (107)
T ss_dssp CEEEEECSSCHHHHH-HH------HHHHHHHHHSCCCCEEEETTTC--HHHHHHSTTS-CSEEEETT--TTEEE--ECSS
T ss_pred EEEEEeCCCChhHHH-HH------HHHHHHHHhcCCeEEEEECCCC--HHHHHHhCCC-CceEEEEE--CCEEE--EecC
Confidence 467778899999998 42 222333222 355556677643 3467789986 99987654 57765 3577
Q ss_pred CChHHHHHHH
Q 013325 262 VQPESLLEDL 271 (445)
Q Consensus 262 ~~~~~~l~~L 271 (445)
.+++.+...|
T Consensus 97 ~~~~~L~~~L 106 (107)
T 2fgx_A 97 LDSDVIGAYL 106 (107)
T ss_dssp CCCHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 8888776654
No 358
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.64 E-value=1.1 Score=34.71 Aligned_cols=68 Identities=15% Similarity=0.072 Sum_probs=57.1
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
+.++|++|-+|--.+.+-|-...-+|+.|+.-|-.+- +.++..|.|....--.. ..|.++||.|+||.
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kc-efdp~~~~Ll~d~~~~e---~LdLskSLndlgir 75 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKC-EFDPLHTLLLKDYQSQE---PLDLTKSLNDLGLR 75 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHT-TCCTTSEEEESCSSCCC---BCCTTSCHHHHTCS
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcc-cCChhhEEEecCCCCCc---ccchhcchhhhhhh
Confidence 3689999999999999999999999999999977653 56788898888654442 45899999999997
No 359
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.44 E-value=0.3 Score=35.92 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=35.4
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNES 53 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w-~le~Av~~~~~~~~~ 53 (445)
+.|++.+++ |-+.+.|++.|..+++ |++.|++-.|++.+.
T Consensus 11 ~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 11 SLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp SSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 378899999 9999999999999975 999999999997554
No 360
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.41 E-value=0.38 Score=38.57 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=51.9
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
.++|.|+. +|+.+.-++..++||.+|-.-|.... +.+....+|+.. ++. | +.+.||.++|+.+ ++|.+.
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GKI--L--KDDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHH-SCCSTTCCEEET--TEE--C--CTTSBTTTTTCCTTEEEEEC
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 46788887 89889999999999999999998864 555566667653 443 4 4489999999984 555543
No 361
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=90.34 E-value=1.3 Score=38.95 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=54.4
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+|.||..+|+.+.-....++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--Ccc--c--cCcCcHHHcCCCCCCEEEEE
Confidence 588999999999999999999999999998864 566777788764 343 4 457899999998 5666554
No 362
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=90.27 E-value=0.76 Score=41.33 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=55.1
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+. -.+. | +.+.||.++|+. +++|.+.
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~-gIp~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEE--TTEE--C--CTTCBGGGGTCCTTCEEEEC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhcc-CCCHHHEEEEE--CCEE--C--CCCCCHHHCCCCCCCEEEEE
Confidence 36899999999999999999999999999998864 55666677774 3553 4 347899999998 4666553
No 363
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.27 E-value=0.45 Score=43.70 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=52.7
Q ss_pred EECCCC-ceEEEeeCCCCchHHHHHHHHhhcCCCCC-cCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEEe
Q 013325 372 VRLPDG-RRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 444 (445)
Q Consensus 372 iRlP~G-~r~~rrF~~~d~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 444 (445)
++.++. ..++..|...+|++.|+..+...+ +... ..++|-.-+....+.+..+.++||+|++|. +..|+|+-
T Consensus 133 ~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 133 CENGNMNNVVTRRFSKADTIDTIEKEIRKIF-SIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EETTEEEEEEEEEECTTSBHHHHHHHHHHHT-TCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred EecCCCCcceEEEEcccchHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 344443 347899999999999999998864 4443 478887755444455556778999999998 67777764
No 364
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.11 E-value=0.4 Score=35.58 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=36.9
Q ss_pred hhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 8 ~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
...++.+.++.++=-..|.++.+..|++|+||++.||+..++..
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 33455777887776777999999999999999999999998753
No 365
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=89.85 E-value=0.38 Score=39.88 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=34.5
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
.+|.+|+++ |-+.+.|+..|..+|+|++.||+..|..
T Consensus 78 ~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 369999999 9999999999999999999999998875
No 366
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=89.75 E-value=0.98 Score=41.85 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=48.7
Q ss_pred EEEeeCCCCchHHHHHHHHhhcCCCCC-cCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 380 MQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 380 ~~rrF~~~d~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
++.+|...+|++.|+..+...+ +... ..++|-.-+-...+.+..+.++||+|++|. +..|+++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLF-NIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHT-TCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHh-CCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 6689999999999999998864 4444 479998766554445556788999999998 5666765
No 367
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=89.71 E-value=0.98 Score=40.87 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=55.7
Q ss_pred cCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecC---C---------------------------
Q 013325 179 QDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDD---T--------------------------- 226 (445)
Q Consensus 179 ~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~---s--------------------------- 226 (445)
.+|..++.+.+.+|..|+. |.. .+.++.+. .+++..+.+. +
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~-~~~------~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~ 157 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHL-LHQ------QLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL 157 (211)
T ss_dssp TCSEEEEEEECTTCHHHHH-HHT------THHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred CCCEEEEEEECCCCHhHHH-HHH------HHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence 5789999999999999999 743 35555443 3333323321 0
Q ss_pred ----------hhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 227 ----------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 227 ----------~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
.+...+++.|++...|+++|. +|+ .+.|..+++.|...|..
T Consensus 158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~---nG~---~~~G~~~~~~l~~~l~~ 208 (211)
T 1t3b_A 158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALEE 208 (211)
T ss_dssp CSSCCCSSHHHHHHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCCcCCEEEEe---CCE---EecCCCCHHHHHHHHHh
Confidence 123456788999999999873 465 45798898888776654
No 368
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=89.58 E-value=0.48 Score=35.51 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=38.4
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
+.+..++|..|+. +. +.+.+++++ .|.++.++.+ .+...++..|++.++|+++| +|+.+
T Consensus 5 ~~f~~~~C~~C~~-~~------~~l~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~gv~~vPt~~i----~g~~~ 66 (80)
T 2k8s_A 5 AIFYHAGCPVCVS-AE------QAVANAIDPSKYTVEIVHLGTD-KARIAEAEKAGVKSVPALVI----DGAAF 66 (80)
T ss_dssp EEEEECSCHHHHH-HH------HHHHHHSCTTTEEEEEEETTTC-SSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred EEEeCCCCCchHH-HH------HHHHHHHHhcCCeEEEEEecCC-hhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence 4456789999998 53 334556654 3555544432 13456778899999999876 47654
No 369
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=89.50 E-value=1.1 Score=34.93 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=52.3
Q ss_pred CceEEEEECCCCceEEE-eeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC-CCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 366 LLCRVGVRLPDGRRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~r-rF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~-fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
...+|.|+. .|+.+.- ....++||.+|..-|... .+.+...-+|+-. |-.+. + +.+.||.++|+.+ ++|++
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-~gip~~~QkLi~~k~~Gk~--L--~D~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKVKGKP--A--ENDVKLGALKLKPNTKIMM 79 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEETTEE--C--CTTSBHHHHTCCTTEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-HCcCHHHeEEEeeccCCcC--c--CCCCCHHHcCCCCCCEEEE
Confidence 357788886 7887777 778999999999999886 4666777788732 32332 4 3478999999985 55554
No 370
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=89.48 E-value=0.9 Score=36.70 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=48.9
Q ss_pred eEEEEECCCCceEEEeeC-CCCchHHHHHHHHhhcCCCCCcCeEEE-cCC------CCCcccCC--CCcCCchhhcCCcC
Q 013325 368 CRVGVRLPDGRRMQRNFL-RTDPIQLLWSYCYSQLEGSEMKPFRLT-HAI------PGATKSLD--YDSKLTFEDSGLAN 437 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~-~~d~l~~l~~fv~~~~~~~~~~~f~L~-~~f------Pr~~~~l~--~~~~~Tl~e~gL~~ 437 (445)
..|+||-++|+. .-... .++||.+|..-|.... +.......|. .+. |.....+. .+.++||.++||.+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~-gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQL-QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHS-CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHh-CcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 569999999964 33567 8899999999998864 4455555563 222 11000121 36789999999984
Q ss_pred -ceEEEE
Q 013325 438 -AMISVT 443 (445)
Q Consensus 438 -~~v~v~ 443 (445)
++|.|+
T Consensus 86 G~~L~l~ 92 (107)
T 1wf9_A 86 GSMVYLA 92 (107)
T ss_dssp TCEEECC
T ss_pred CCEEEEE
Confidence 556554
No 371
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=89.34 E-value=0.89 Score=40.38 Aligned_cols=84 Identities=8% Similarity=-0.030 Sum_probs=47.4
Q ss_pred cCCeEEE-EEeCCCCcchhhhhhhcccCChhHHHHh----hccEE-EEEeecCChhH-H--------------------H
Q 013325 179 QDKWLLV-NLQSTKEFSSHMVLNRDTWANEAVSQTI----STNFI-FWQVYDDTSEG-K--------------------K 231 (445)
Q Consensus 179 ~~K~LlV-~l~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV-~~~~~~~s~eg-~--------------------~ 231 (445)
.+||++| ++-.+||..|.. - .-+.+.++. ..++. +++++.++++. . .
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~-~-----e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~ 128 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSL-N-----HLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAA 128 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHH-T-----HHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCH
T ss_pred CCCCEEEEEEcCCCCCCcCH-H-----HHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchH
Confidence 3666555 455889998865 1 012333322 24566 77777776543 2 2
Q ss_pred HHHHcCCC-----------CCcEEEEEeCCCCceeEEEecC-------CChHHHHHH
Q 013325 232 VCTYYKLD-----------SIPVVLVVDPITGQKMRSWCGM-------VQPESLLED 270 (445)
Q Consensus 232 ~~~~y~v~-----------~~P~l~ii~p~tg~~~~~~~G~-------~~~~~~l~~ 270 (445)
+++.|++. ..|+.+||+ .|.+...+.|. .+++++|+.
T Consensus 129 va~~yGv~~~~~~~g~g~~~~r~tfiId--dG~I~~~~~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 129 FTKAIGMEIDLSAGTLGIRSKRYSMLVE--DGVVKALNIEESPGQATASGAAAMLEL 183 (184)
T ss_dssp HHHHTTCEEEEGGGTCEEEECCEEEEEE--TTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred HHHHcCCceeccccCCcccceeEEEEEC--CCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence 34455552 257788884 78888777653 245555554
No 372
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=89.20 E-value=1.4 Score=42.60 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=56.9
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+..+|.||..+|+.+.-++..++||.+|..-|.... +.....-+|+.. .+. | +.++||.++|+. +++|.+.
T Consensus 232 ~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~-GIp~~~QRLi~~--Gk~--L--~D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEeC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999999998864 556667778753 443 4 457999999998 5666554
No 373
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=89.10 E-value=1.3 Score=34.73 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=54.3
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
.|-|..|+|+|.+-+..++.+|.+|..=+-.+. +.+...|.|..+ ++. .|.+..|.=.||. ++.|-+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~-gl~~~~~~Lkh~--~k~----lDLSlpfRlsgLpnnAkLEL 78 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQ-DFNPSEYDLKFQ--RTV----LDLSLQWRFANLPNNAKLEM 78 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHT-TCCGGGCEEEET--TEE----ESSSCBHHHHCCCSSCEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHh-CCChhhCeEEeC--CEe----ccccceeEecCCCCCCEEEE
Confidence 799999999999999999999999877655543 667889999976 342 3889999999998 465543
No 374
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=89.00 E-value=1.2 Score=38.98 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=13.6
Q ss_pred CcEEEEEeCCCCceeEEEec
Q 013325 241 IPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~~~~~G 260 (445)
.|+.+||| .|.+...+.+
T Consensus 138 ~r~tfvID--dG~I~~~~v~ 155 (173)
T 3mng_A 138 KRFSMVVQ--DGIVKALNVE 155 (173)
T ss_dssp CCEEEEEE--TTEEEEEEEC
T ss_pred EEEEEEEE--CCEEEEEEEe
Confidence 48888888 6887777665
No 375
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=88.97 E-value=2.9 Score=33.14 Aligned_cols=76 Identities=7% Similarity=0.018 Sum_probs=56.0
Q ss_pred CCceEEEEECCCCc--eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCC--CCCcccCCCCcCCchhhcCCcC-ce
Q 013325 365 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI--PGATKSLDYDSKLTFEDSGLAN-AM 439 (445)
Q Consensus 365 ~~~~~I~iRlP~G~--r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~f--Pr~~~~l~~~~~~Tl~e~gL~~-~~ 439 (445)
.+.++|.|..++.+ .+.++|..++||..|-.-|... .|.+...-+|+..= ++....+ .+.++||.+.|+.+ ++
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-~Gip~~~QrLi~~g~~g~~~~~L-~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-CGTSVNSMALELYDDSGSKVAVL-SDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-HCCCTTSEEEEEECSSSCBCCCS-SGGGSCHHHHCCCSCCE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-HCcCHHHeEEEEecCCCccccee-cCCcCCHHHCCCCCCCE
Confidence 56889999987774 7999999999999999999886 46667777776531 1211012 35689999999984 55
Q ss_pred EEE
Q 013325 440 ISV 442 (445)
Q Consensus 440 v~v 442 (445)
|.|
T Consensus 90 Ihl 92 (97)
T 2kj6_A 90 LHI 92 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 376
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=88.71 E-value=0.87 Score=45.26 Aligned_cols=69 Identities=7% Similarity=0.144 Sum_probs=54.5
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhc--CCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 440 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v 440 (445)
...+|.||..+|+.+.-.+..++||.+|...|.... .+......+|+. -+|. | +.++||.++|+.. ++|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~--L--~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKI--L--SDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSE--E--CSSSBTTTTCCCTTSCE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCee--c--CCcCCHHHcCCCCCCEE
Confidence 467899999999999999999999999999998842 345566777874 4654 5 3478999999984 455
No 377
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=88.67 E-value=2.7 Score=38.37 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=54.5
Q ss_pred CeEEEEE-eCCCCcchhhhhhhcccCChhHHHH----hhccEEEEEeecCChhH--------------------------
Q 013325 181 KWLLVNL-QSTKEFSSHMVLNRDTWANEAVSQT----ISTNFIFWQVYDDTSEG-------------------------- 229 (445)
Q Consensus 181 K~LlV~l-~~~~~f~~~~~~~rdv~~~~~V~~~----l~~~FV~~~~~~~s~eg-------------------------- 229 (445)
+|++|++ -.++|+.|.. - -+.+.++ -+.++-+++++.++.+.
T Consensus 32 ~~vvL~~~~a~~cp~C~~-e------l~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~ 104 (224)
T 1prx_A 32 SWGILFSHPRDFTPVCTT-E------LGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIID 104 (224)
T ss_dssp SEEEEEEESCSSCHHHHH-H------HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEE
T ss_pred CeEEEEEECCCCCCCcHH-H------HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceee
Confidence 3755554 5678888865 1 1233332 23467777777776542
Q ss_pred ---HHHHHHcCCC------------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHhhh
Q 013325 230 ---KKVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM 275 (445)
Q Consensus 230 ---~~~~~~y~v~------------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~~~ 275 (445)
..+++.|++. .+|+++|||+ .|.+...+.|. .+.++++..|....
T Consensus 105 D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eil~~i~~l~ 168 (224)
T 1prx_A 105 DRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISLQ 168 (224)
T ss_dssp CTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred cCchHHHHHhCCCCcccccCCCccccceEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 1244556652 3799999997 58888887653 25778877776554
No 378
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.49 E-value=1.5 Score=34.14 Aligned_cols=71 Identities=10% Similarity=-0.031 Sum_probs=50.9
Q ss_pred eEEEEECCCCceEE--E-eeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 368 CRVGVRLPDGRRMQ--R-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 368 ~~I~iRlP~G~r~~--r-rF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
..|-|+...|+... - ....++||.+|..-|....++.....-+|+..+=++. | +.+.||.+.|+.+ ++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~--L--~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKS--L--KDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCC--C--CTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcC--c--CCCCCHHHcCCCCCCEEEE
Confidence 56778888887753 4 7889999999999998743455556666765443443 4 4578999999985 44544
No 379
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=88.19 E-value=1.7 Score=37.67 Aligned_cols=84 Identities=12% Similarity=-0.024 Sum_probs=48.3
Q ss_pred cCCeEEEEEe-CCCCcchhh-hhhhcccCChhHHH----HhhccE-EEEEeecCChhH-H--------------------
Q 013325 179 QDKWLLVNLQ-STKEFSSHM-VLNRDTWANEAVSQ----TISTNF-IFWQVYDDTSEG-K-------------------- 230 (445)
Q Consensus 179 ~~K~LlV~l~-~~~~f~~~~-~~~rdv~~~~~V~~----~l~~~F-V~~~~~~~s~eg-~-------------------- 230 (445)
.+|+++|++. .+||..|.. -+ +.+.+ |-..++ .++.++.++++. .
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~-------p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~ 102 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHL-------PGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGG 102 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHH-------HHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTS
T ss_pred CCCcEEEEEeCCCCCCCCCHHHH-------HHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCC
Confidence 4678888876 788987753 12 22222 223456 666666666542 2
Q ss_pred HHHHHcCCCC-----------CcEEEEEeCCCCceeEEEecC-------CChHHHHHHH
Q 013325 231 KVCTYYKLDS-----------IPVVLVVDPITGQKMRSWCGM-------VQPESLLEDL 271 (445)
Q Consensus 231 ~~~~~y~v~~-----------~P~l~ii~p~tg~~~~~~~G~-------~~~~~~l~~L 271 (445)
.+++.|++.. .|+.+|| + .|.++..+.|. ..++.+++.|
T Consensus 103 ~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~-~G~I~~~~~~~~~~~~~~~~~~~~~~~~ 159 (167)
T 2wfc_A 103 AFTKAVDMELDLSAVLGNVRSKRYSLVI-E-DGVVTKVNVEPDGKGLTCSLAPNILSQL 159 (167)
T ss_dssp HHHHHTTCEECCHHHHSSCEECCEEEEE-E-TTEEEEEEECTTSSSSSTTSHHHHHHHH
T ss_pred cHHHHcCCccccccccCcccceEEEEEE-e-CCEEEEEEecCCCCcceeccHHHHHHHh
Confidence 2344455432 3788888 5 68877766542 2456666555
No 380
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=88.19 E-value=0.69 Score=38.33 Aligned_cols=45 Identities=16% Similarity=0.395 Sum_probs=41.4
Q ss_pred CCCChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 3 ~~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
+.||+.+++ +|.+++++ |-+...|+.-|..++.|++.|++-.|..
T Consensus 2 ~~l~~~e~~-~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 2 SHMSPSERQ-CVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp CCSCHHHHH-HHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 568889866 99999999 9999999999999999999999999985
No 381
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=88.04 E-value=2.8 Score=34.41 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=53.7
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
...++|.|+-.+|+.+.-+...+++|+.|++...... +.....++|.-. ++. + ..+.|.+++++- +.+|-|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~-Gl~~~~irFlFD--G~r--I--~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCTTSEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHh-CCChhhEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEE
Confidence 3578999999999999999999999999998765543 555667766654 443 3 457899999998 455544
No 382
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=87.74 E-value=1.8 Score=38.05 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 232 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 232 ~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.+..+++...|+++| +|+.+....|..+.+.|...|...+.
T Consensus 144 ~a~~~gv~gtPt~~v----ng~~~~~~~G~~~~e~l~~~i~~l~~ 184 (192)
T 3h93_A 144 LAMAYQVTGVPTMVV----NGKYRFDIGSAGGPEETLKLADYLIE 184 (192)
T ss_dssp HHHHHTCCSSSEEEE----TTTEEEEHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEEE----CCEEEecccccCCHHHHHHHHHHHHH
Confidence 356688999999876 57776555688899999888877765
No 383
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.66 E-value=3.1 Score=34.26 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=55.9
Q ss_pred CceEEEEE-CCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 366 LLCRVGVR-LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 366 ~~~~I~iR-lP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
..++|.|. .|+|.+++-.|..+.+|.+|-+.+.... +.+...-+|+.. +|. | ..+.||.+.|+. +.+|.++
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~-~iP~e~qrLIy~--GKi--L--KD~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLL-GIPHSVLQIRYS--GKI--L--KNNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHH-TCCTTTEEEEET--TEE--E--CSSCCHHHHSCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhh-CCChHHEEEEEC--CeE--c--CCcchHHHcCCCCCCEEEEE
Confidence 35778887 8899999999999999999999998875 556667777765 564 5 447799999997 5777544
No 384
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=87.65 E-value=2.7 Score=32.46 Aligned_cols=71 Identities=8% Similarity=0.069 Sum_probs=50.5
Q ss_pred ceEEEEECC--CCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC-----CCCCcccCCCCcCCchhhcCCc-Cc
Q 013325 367 LCRVGVRLP--DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-----IPGATKSLDYDSKLTFEDSGLA-NA 438 (445)
Q Consensus 367 ~~~I~iRlP--~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~-----fPr~~~~l~~~~~~Tl~e~gL~-~~ 438 (445)
+++|.|... .+....|||..++||..|-.-|... .|.+...-+|... |..+ ..+.+.||.+.|+. +.
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-~Gip~~~QrLi~~~~~~~~~g~----~l~d~~tL~~Y~i~~g~ 76 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-FATPPEYMQLQLIDDRGITIEK----NMANDKQLGYYQCRDEF 76 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-SCCCGGGEEEEEECTTSCEEES----SCCTTSBGGGGTCCTTC
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-HCCCHHHEEEEEecCCCCceee----EcCCCCCHHHCCCCCCC
Confidence 456666643 3344689999999999999999875 4666667777642 3333 23668999999998 56
Q ss_pred eEEE
Q 013325 439 MISV 442 (445)
Q Consensus 439 ~v~v 442 (445)
+|.|
T Consensus 77 ~ihl 80 (86)
T 4b6w_A 77 VIHV 80 (86)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6644
No 385
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=87.59 E-value=0.84 Score=32.11 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=37.7
Q ss_pred hhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013325 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (445)
Q Consensus 8 ~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (445)
+.-++.|+..|++ |-|.+.|++-|..++.|++.|.+...+-..
T Consensus 5 ~p~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 5 PQLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred CCChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 3446689999999 999999999999999999999999888543
No 386
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=86.71 E-value=1.7 Score=37.91 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=55.2
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
...|.||..+|+.+.-++..++||..|-.-|.... +.+....+|+.. .+. + +.+.||.+.|+. +++|.+.
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~L~~~--g~~--L--~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TEE--C--CTTSBSGGGTCCTTCEEEEC
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHh-CCCceeEEEEEC--Ccc--C--CCCCcHHHhCCCCCCEEEEE
Confidence 46788899999999999999999999999998864 666777778753 443 4 457899999998 4666553
No 387
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=86.18 E-value=0.14 Score=42.98 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
+|.|+..+|+.+.-.+..++||.+|-.-|... .+.+.....|+ |-.+. | +.+.||.+.|+. +++|.+.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi--~~Gk~--L--~D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLI--FAGKQ--L--EDGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-hCcChHHEEEE--ECCEE--C--CCCCchhhhccCCCCEEEEE
Confidence 47788999999999999999999999998875 35555666676 44553 4 458899999998 4555543
No 388
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.91 E-value=1.8 Score=35.97 Aligned_cols=78 Identities=8% Similarity=0.096 Sum_probs=46.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC--hhH-HHHHHHcCCCCC
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSI 241 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s--~eg-~~~~~~y~v~~~ 241 (445)
......+.+..+.+..+ ++| +..++|..|+. +. .+| +-+.-.|..+-++.+. ++. ..++..|++..+
T Consensus 12 ~~~~~~~~~~~~i~~~~-vvv-f~~~~Cp~C~~-~~-~~L------~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~v 81 (130)
T 2cq9_A 12 LATAPVNQIQETISDNC-VVI-FSKTSCSYCTM-AK-KLF------HDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV 81 (130)
T ss_dssp CSCCHHHHHHHHHHHSS-EEE-EECSSCSHHHH-HH-HHH------HHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCS
T ss_pred ccHHHHHHHHHHHcCCc-EEE-EEcCCChHHHH-HH-HHH------HHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCc
Confidence 34566666676666665 444 56689999988 42 222 2233456666444331 121 247788999999
Q ss_pred cEEEEEeCCCCceeE
Q 013325 242 PVVLVVDPITGQKMR 256 (445)
Q Consensus 242 P~l~ii~p~tg~~~~ 256 (445)
|.|+ + +|+.+.
T Consensus 82 P~l~-i---~G~~ig 92 (130)
T 2cq9_A 82 PRIF-V---NGTFIG 92 (130)
T ss_dssp SEEE-E---TTEEEE
T ss_pred CEEE-E---CCEEEc
Confidence 9984 4 366543
No 389
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=85.41 E-value=2 Score=39.08 Aligned_cols=88 Identities=8% Similarity=0.083 Sum_probs=53.2
Q ss_pred CC-eEEEEE-eCCCCcchhhhhhhcccCChhHHHHh----hccEEEEEeecCChhH------------------------
Q 013325 180 DK-WLLVNL-QSTKEFSSHMVLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------ 229 (445)
Q Consensus 180 ~K-~LlV~l-~~~~~f~~~~~~~rdv~~~~~V~~~l----~~~FV~~~~~~~s~eg------------------------ 229 (445)
+| |++|++ -.++|+.|.. - -+.+.++. +.++.++++++++.+.
T Consensus 30 Gk~~vvL~f~~a~~cp~C~~-e------l~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D 102 (220)
T 1xcc_A 30 ENSWAILFSHPNDFTPVCTT-E------LAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCD 102 (220)
T ss_dssp TTSEEEEECCSCTTCHHHHH-H------HHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEEC
T ss_pred CCCeEEEEEECCCCCCCCHH-H------HHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEEC
Confidence 44 666655 4677887765 1 12233222 3467777777766432
Q ss_pred --HHHHHHcCCC------------CCcEEEEEeCCCCceeEEEecC----CChHHHHHHHHhhh
Q 013325 230 --KKVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM 275 (445)
Q Consensus 230 --~~~~~~y~v~------------~~P~l~ii~p~tg~~~~~~~G~----~~~~~~l~~L~~~~ 275 (445)
..+++.|++. ..|+++|||| .|.+...+.|. .+.++++..|....
T Consensus 103 ~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~lq 165 (220)
T 1xcc_A 103 ESRELANKLKIMDEQEKDITGLPLTCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSLQ 165 (220)
T ss_dssp TTSHHHHHHTCEEEEEECTTSCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred chhHHHHHhCCCCcccccCCCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 2244556652 3799999997 58887777553 35778877766553
No 390
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=85.29 E-value=4.2 Score=36.74 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 364 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+...++|.|+. +|+.+..+...+++|..|+...... .|.....++|.-. ++. + ..+.|.+++|+-. .+|-|
T Consensus 26 ~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er-~Gi~~~~~RF~Fd--G~r--I--~~~~TP~dL~MEdgD~Idv 97 (200)
T 3pge_A 26 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA 97 (200)
T ss_dssp CCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHH-HSSCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHH-hCCChhhEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 34678999986 9999999999999999999765443 3556667766654 443 3 4688999999984 55544
Q ss_pred E
Q 013325 443 T 443 (445)
Q Consensus 443 ~ 443 (445)
.
T Consensus 98 ~ 98 (200)
T 3pge_A 98 H 98 (200)
T ss_dssp E
T ss_pred E
Confidence 3
No 391
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=85.42 E-value=0.17 Score=41.77 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (445)
-+|.|.-+||+..|+..-.+.|+++|+||..||.++-+.+..
T Consensus 20 ~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 20 MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 389999999444479999999999999999999999886543
No 392
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.73 E-value=4.1 Score=32.53 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=50.8
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 443 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v~ 443 (445)
.+..+.+++ .|+.+.-.+..++||..|-.-|.... +.+...=+| ..||... + +.+.||.++||.+ ++|+++
T Consensus 8 ~m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~t-gIpp~~QkL-i~~~~gk--L--~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 8 RMLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENEL-QIPVSKMLL-KGWKTGD--V--EDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp CEEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHH-CCCTTTCCE-ECCSSSC--C--CTTSBHHHHCCCSEEEEEEC
T ss_pred ceEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHH-CCChhHeEE-EccCCCC--C--CCcCCHHHcCCCCCCEEEEE
Confidence 356677777 57778888999999999999988753 545445556 3455543 4 4478999999985 556554
No 393
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.50 E-value=4.4 Score=31.67 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=53.1
Q ss_pred ceEEEEECCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCC-CCcc-cCCCCcCCchhhcCCcC-ceEEE
Q 013325 367 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIP-GATK-SLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 367 ~~~I~iRlP~G~-r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fP-r~~~-~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
.++|.|+..++. ...+++..++||..|..-|... .+.+...-+|...-+ .+.. .+ .+.++||.+.|+.+ ++|.|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-~gip~~~qrL~~~~~~g~~~~~l-~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKL-DQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEEC-CCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-HCCCHHHeEEEEeCCCCcccccc-CCCcCCHhHCCCCCCCEEEE
Confidence 477888876664 6999999999999999999886 466666777766432 2210 12 25689999999985 55554
No 394
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=84.45 E-value=1.9 Score=29.21 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=34.6
Q ss_pred hHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 9 ~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
|-++.|+..|++ |-|.+.|++-|..++.|++.|.+...+
T Consensus 3 ~~e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 3 QLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 446688899998 999999999999999999999987665
No 395
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=83.85 E-value=2.5 Score=31.40 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=42.7
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhh--ccEEEEEeecCChh--HHHHHHHcC--CCCCcEEEEEeCCCCceeEE
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE--GKKVCTYYK--LDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~--~~FV~~~~~~~s~e--g~~~~~~y~--v~~~P~l~ii~p~tg~~~~~ 257 (445)
++.+..++|..|+. +. .+| .++.. .++-+..++++... ...++..|+ +.++|.+ +++ |+.+
T Consensus 3 v~~f~~~~C~~C~~-~~-~~l-----~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i-~~~---g~~i-- 69 (85)
T 1ego_A 3 TVIFGRSGCPYCVR-AK-DLA-----EKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI-FVD---QQHI-- 69 (85)
T ss_dssp EEEECCTTSTHHHH-HH-HHH-----HHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE-EET---TEEE--
T ss_pred EEEEeCCCCCCHHH-HH-HHH-----HHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE-EEC---CEEE--
Confidence 45567789999988 42 222 22211 34555555664322 246788888 8999998 443 6654
Q ss_pred EecCCChHHHHHHHHh
Q 013325 258 WCGMVQPESLLEDLVP 273 (445)
Q Consensus 258 ~~G~~~~~~~l~~L~~ 273 (445)
.|. +++...+.+
T Consensus 70 -~~~---~~l~~~~~~ 81 (85)
T 1ego_A 70 -GGY---TDFAAWVKE 81 (85)
T ss_dssp -ESS---HHHHHHHHH
T ss_pred -ECH---HHHHHHHHH
Confidence 343 455555544
No 396
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=83.13 E-value=2.1 Score=37.12 Aligned_cols=52 Identities=6% Similarity=-0.145 Sum_probs=30.8
Q ss_pred CeEEEEEeCCCCcchhhhhhhcccCChhHHH----HhhccEE-EEEeecCChhH-HHHHHHcCC
Q 013325 181 KWLLVNLQSTKEFSSHMVLNRDTWANEAVSQ----TISTNFI-FWQVYDDTSEG-KKVCTYYKL 238 (445)
Q Consensus 181 K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~----~l~~~FV-~~~~~~~s~eg-~~~~~~y~v 238 (445)
+.+|+++-.+||..|.. = .-+.+.+ |-..++. +++++.++.+. ..+++.+++
T Consensus 45 ~vvl~~~~a~wcp~C~~-e-----h~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSS-K-----HVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA 102 (171)
T ss_dssp EEEEEECSCTTCTTHHH-H-----THHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred CEEEEEecCCCCCCCCH-H-----HHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 46677888999999875 1 0123332 3234677 77777776543 345555554
No 397
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=82.97 E-value=3.9 Score=36.73 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=51.0
Q ss_pred CCCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceEEE
Q 013325 364 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 442 (445)
Q Consensus 364 ~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v~v 442 (445)
+...+.|.|+. +|+.+.-+...+++|..|++..... .+.....++|.-. .+. + +.+.|.+++++-. .+|-|
T Consensus 54 p~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcER-qGL~~~sIRFLFD--GqR--I--~~ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 54 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLTFLYD--GIE--I--QADQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp -CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-TTCCGGGSCEEET--TEE--C--CSSCCTTTTTCCTTEEEEE
T ss_pred CCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHH-hCCCcccEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEE
Confidence 34678899985 9999999999999999999876553 3555555555443 332 3 4688999999985 54443
No 398
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=82.45 E-value=8.6 Score=30.46 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=51.6
Q ss_pred CCceEEEEECCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEE
Q 013325 365 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 442 (445)
Q Consensus 365 ~~~~~I~iRlP~G~-r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v 442 (445)
+..++|.++-.+|+ .+..+...+++++.|++...... +.....+++.-. +.. + ..+.|.+++++-..-++=
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~-g~~~~~vrF~FD--G~r--I--~~~~TP~dLdMEDgD~ID 94 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-GLSGRKLSFFFD--GTK--L--SGRELPADLGMESGDLIE 94 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHT-TCSSSCCEEEET--TEE--C--CSCSCHHHHTCCTTEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHH-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEE
Confidence 46788999999995 78999999999999998755543 444556655543 332 3 567899999998544443
No 399
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=81.60 E-value=2.9 Score=34.54 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=50.2
Q ss_pred EEEECCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc--------CceE
Q 013325 370 VGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA--------NAMI 440 (445)
Q Consensus 370 I~iRlP~G~-r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~--------~~~v 440 (445)
|.||.-.|+ .+.-....++||..|-.-|... .+.+....+|+. -++. | +.++||.+.|+. +++|
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~-egIP~~qQrLi~--~Gk~--L--eD~~TLsdy~I~~~~a~~q~~stL 75 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPEEQRLYK--DDQL--L--DDGKTLGECGFTSQTARPQAPATV 75 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEE--C--CTTSBHHHHTCCTTTSBTTBCEEE
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeE--C--CCCCCHHHcCcccccccCCCCCEE
Confidence 445554565 4777899999999999999886 466778888984 4553 4 567999999998 4666
Q ss_pred EEE
Q 013325 441 SVT 443 (445)
Q Consensus 441 ~v~ 443 (445)
.+.
T Consensus 76 ~L~ 78 (118)
T 2fnj_B 76 GLA 78 (118)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 400
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=81.09 E-value=0.31 Score=42.33 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc-CceEEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 443 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v~ 443 (445)
.|.||..+|+.+.-.+..++||.+|-.-|... .+.+.....|+ |-.+. | +.+.||.+.|+. +++|.+.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-~gip~~~QrLi--~~Gk~--L--~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLI--FAGKQ--L--EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-hCCCHHHEEEE--ECCEE--c--cccCcHHHcCCCCCCEEEEE
Confidence 57889999998888999999999999998875 35555566666 34553 4 457899999998 4555543
No 401
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=80.25 E-value=8.4 Score=31.62 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=54.4
Q ss_pred CceEEEEECCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCC-CCCcc-cCCCCcCCchhhcCCcC-ceEE
Q 013325 366 LLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATK-SLDYDSKLTFEDSGLAN-AMIS 441 (445)
Q Consensus 366 ~~~~I~iRlP~G~-r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~f-Pr~~~-~l~~~~~~Tl~e~gL~~-~~v~ 441 (445)
..++|.|+..++. .+.++|..++||..|..-|... .|.+...-+|+..= ..+.. .+ .+.++||.+.|+.+ ++|.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-~Gip~~~qrL~~~g~~~~~~~~l-~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGEL-TDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEEC-CCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-hCCCHHHeEEEEecCCCcccccc-CCCcCCHHHCCCCCCCEEE
Confidence 3688888877664 6999999999999999999886 46667777777531 11210 12 25689999999985 5565
Q ss_pred EE
Q 013325 442 VT 443 (445)
Q Consensus 442 v~ 443 (445)
|+
T Consensus 83 vv 84 (122)
T 1t0y_A 83 AV 84 (122)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 402
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=79.40 E-value=1.9 Score=34.72 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=26.2
Q ss_pred HHhhhccccCCCHHHHHHHHHHcCCCHHHHHH
Q 013325 14 VSSFLEIAVGQTAETAVQFLQATSWKLDEAIQ 45 (445)
Q Consensus 14 v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~ 45 (445)
|.-.|+= +|++.+.|+..|+.|||||=.||-
T Consensus 69 i~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 69 IELVMNQ-TGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3344555 899999999999999999999984
No 403
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=79.39 E-value=5.7 Score=34.74 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHcCCCCCcEEEEEeCCCCceeEEEecCC--Ch-HHHHHHHHhhhh
Q 013325 232 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMV--QP-ESLLEDLVPFMD 276 (445)
Q Consensus 232 ~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~--~~-~~~l~~L~~~~~ 276 (445)
.++.+++...|+++| +|+.+ +.|.. +. +.|+..|...+.
T Consensus 143 ~a~~~gv~gtPt~vi----ng~~~--~~g~~~~~~~e~~~~~i~~L~~ 184 (195)
T 3hd5_A 143 LAEAAHIDGTPAFAV----GGRYM--TSPVLAGNDYAGALKVVDQLIV 184 (195)
T ss_dssp HHHHTTCCSSSEEEE----TTTEE--ECTTTTTGGGTTHHHHHHHHHH
T ss_pred HHHHhCCCcCceEEE----CCEEE--eCccccCChHHHHHHHHHHHHH
Confidence 355688999999986 46654 34433 34 667766655554
No 404
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=78.83 E-value=5 Score=29.96 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=40.9
Q ss_pred CCChhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 4 VLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
.++..+.+..|.+..+|--.....-...+|+.+|.|+|.+|+..|++.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 345666777888888886667899999999999999999999999963
No 405
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=77.90 E-value=9.9 Score=34.53 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=41.0
Q ss_pred HHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 177 SVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 177 k~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
....+++.+.+.+.++..+.. .+.+++....|....-.++ ...+++.|+++.||+++++.+ +|+..
T Consensus 154 ~~~~~~~al~f~~~~~~~~~~----------~~~d~~~~~~i~v~~~~~~--~~~l~~~f~v~~~Pslvl~~~-~g~~~ 219 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYLARE----------VALDLSQHKGVAVRRVLNT--EANVVRKFGVTDFPSCYLLFR-NGSVS 219 (244)
T ss_dssp HCCCSEEEEEEECTTCCHHHH----------HHHHTTTCTTEEEEEEETT--CHHHHHHHTCCCSSEEEEEET-TSCEE
T ss_pred cCCCceEEEEEEECCcchHHH----------HHHHhccCCceEEEEEeCc--hHHHHHHcCCCCCCeEEEEeC-CCCeE
Confidence 367788888777765543322 2234444333444332222 256889999999999999995 56543
No 406
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=76.75 E-value=7.8 Score=32.82 Aligned_cols=74 Identities=8% Similarity=0.103 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC--hhH-HHHHHHcCCCCCcEE
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVV 244 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s--~eg-~~~~~~y~v~~~P~l 244 (445)
+..+.+..+....+ ++| +..++|..|.. +. .+| +-+.-.|..+-++.+. ++. ..++..|++.++|.|
T Consensus 37 ~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~-~k-~~L------~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i 106 (146)
T 2ht9_A 37 APVNQIQETISDNC-VVI-FSKTSCSYCTM-AK-KLF------HDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI 106 (146)
T ss_dssp CCHHHHHHHHHHCS-EEE-EECTTCHHHHH-HH-HHH------HHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE
T ss_pred HHHHHHHHHhcCCC-EEE-EECCCChhHHH-HH-HHH------HHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE
Confidence 44555555655554 444 56789999988 42 222 2233456665444331 121 247788999999998
Q ss_pred EEEeCCCCcee
Q 013325 245 LVVDPITGQKM 255 (445)
Q Consensus 245 ~ii~p~tg~~~ 255 (445)
+ + +|+.+
T Consensus 107 f-i---~G~~i 113 (146)
T 2ht9_A 107 F-V---NGTFI 113 (146)
T ss_dssp E-E---TTEEE
T ss_pred E-E---CCEEE
Confidence 4 4 36643
No 407
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=76.44 E-value=1.5 Score=43.48 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=38.0
Q ss_pred hhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 8 ~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
...++.|.+.++| |-+.+.|+.-|.+++||++.||+..|++-
T Consensus 166 ~~~~~~i~~l~~M--Gf~~~~~~~AL~a~~nn~~~A~e~L~~gi 207 (368)
T 1oqy_A 166 SEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTGI 207 (368)
T ss_dssp TTHHHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTTTSS
T ss_pred cchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3457799999999 89999999999999999999999999853
No 408
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=75.55 E-value=6.5 Score=26.88 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=35.6
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (445)
+++|.|-..+-.|.+..+-+.=|+++|-|+..||+..++..
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 45888888887999999999999999999999999988754
No 409
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=75.17 E-value=8.1 Score=30.60 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCChhH---HH-HHHHcCCC
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEG---KK-VCTYYKLD 239 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s~eg---~~-~~~~y~v~ 239 (445)
..+.+.++...+.++ ++| +..++|..|+. . +.+|+ -.|..+-++.+.+++ .. +...++..
T Consensus 6 ~~~~~~~~~~i~~~~-v~v-y~~~~Cp~C~~-~----------~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~ 72 (113)
T 3rhb_A 6 SRMEESIRKTVTENT-VVI-YSKTWCSYCTE-V----------KTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQH 72 (113)
T ss_dssp CHHHHHHHHHHHHSS-EEE-EECTTCHHHHH-H----------HHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCC-EEE-EECCCChhHHH-H----------HHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCC
Confidence 456666777777777 444 45578999987 3 33443 346555444432223 22 45567889
Q ss_pred CCcEEEEEeCCCCcee
Q 013325 240 SIPVVLVVDPITGQKM 255 (445)
Q Consensus 240 ~~P~l~ii~p~tg~~~ 255 (445)
++|.|+ |+ |+.+
T Consensus 73 tvP~if-i~---g~~i 84 (113)
T 3rhb_A 73 TVPNVF-VC---GKHI 84 (113)
T ss_dssp SSCEEE-ET---TEEE
T ss_pred CcCEEE-EC---CEEE
Confidence 999994 44 6654
No 410
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=74.37 E-value=7.7 Score=37.62 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=54.6
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC-CCCCcccCCCCcCCchhhcCCc-CceEEE
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLA-NAMISV 442 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~-fPr~~~~l~~~~~~Tl~e~gL~-~~~v~v 442 (445)
..++|.|+. +|+.+.-....++||.+|-.-|.... |.+...-+|+-. |.++. + +.+.||.++||. +++|++
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~t-gVpp~~QkLi~~k~~Gk~--l--~D~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKT-QVRPERQKLLNLKYKGKT--A--ADNVKISALELKPNFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHH-CCCGGGCEETTCBSSSSB--C--CTTSBTTSSCCC--CEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEeecccCCcc--c--CccccHHHcCCCCCCEEEE
Confidence 467899997 78889999999999999999998763 666667778743 55553 4 447899999998 566655
No 411
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=74.15 E-value=26 Score=30.18 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
...+..+++...|++ ||+ |+.+ +.|..+.+.|...|...+..
T Consensus 140 ~~~a~~~gv~gtPt~-vin---g~~~--~~g~~~~~~l~~~i~~~l~~ 181 (195)
T 2znm_A 140 QKLTEQYRIDSTPTV-IVG---GKYR--VIFNNGFDGGVHTIKELVAK 181 (195)
T ss_dssp HHHHHHTTCCSSSEE-EET---TTEE--ECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCeE-EEC---CEEE--EcCCCCHHHHHHHHHHHHHH
Confidence 345678999999995 454 6543 46777788888888887763
No 412
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=73.86 E-value=13 Score=29.93 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=51.8
Q ss_pred CCCCCCceEEEEECCC--C--ceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 361 KVDRSLLCRVGVRLPD--G--RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 361 ~~~~~~~~~I~iRlP~--G--~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
..-+++.++++|.+-| | ..+.-.+..++||..|-+-|.... |.+...-+|+.+ ++ + .+.+.||.+.|+.
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~-Gipp~~QRli~g--gk---l-l~D~~TL~~ygI~ 88 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDY-GFPPVLQQWVIG--QR---L-ARDQETLHSHGVR 88 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TE---E-ECTTCBTGGGTCC
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHh-CCCHHHEEEecc--Ce---E-ccCcCcHHHcCCC
Confidence 3334456777777655 3 578889999999999999998764 666666677754 43 3 3558999999994
Q ss_pred --CceEEE
Q 013325 437 --NAMISV 442 (445)
Q Consensus 437 --~~~v~v 442 (445)
+++|.+
T Consensus 89 ~~G~t~hL 96 (105)
T 4dbg_A 89 QNGDSAYL 96 (105)
T ss_dssp STTCEEEE
T ss_pred CCCCEEEE
Confidence 455544
No 413
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=73.85 E-value=8.9 Score=30.03 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=38.3
Q ss_pred HHHHHHHcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCC-hhH-HHHHHHcCCCCCc
Q 013325 172 AKDAASVQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEG-KKVCTYYKLDSIP 242 (445)
Q Consensus 172 A~~~Ak~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s-~eg-~~~~~~y~v~~~P 242 (445)
-+....+.++ ++||..+ ++|..|+. . +.+|++ .|..+ +++. ++. ..+...++..++|
T Consensus 9 ~~~~~i~~~~-vvvf~~g~~~~~~C~~C~~-~----------~~~L~~~~i~~~~v--di~~~~~~~~~l~~~~g~~~vP 74 (105)
T 2yan_A 9 RLKVLTNKAS-VMLFMKGNKQEAKCGFSKQ-I----------LEILNSTGVEYETF--DILEDEEVRQGLKAYSNWPTYP 74 (105)
T ss_dssp HHHHHHTSSS-EEEEESBCSSSBCTTHHHH-H----------HHHHHHHTCCCEEE--EGGGCHHHHHHHHHHHTCCSSC
T ss_pred HHHHHhccCC-EEEEEecCCCCCCCccHHH-H----------HHHHHHCCCCeEEE--ECCCCHHHHHHHHHHHCCCCCC
Confidence 3444444554 6677652 78998887 3 333332 45555 4433 332 3466778889999
Q ss_pred EEEEEeCCCCcee
Q 013325 243 VVLVVDPITGQKM 255 (445)
Q Consensus 243 ~l~ii~p~tg~~~ 255 (445)
.|+ ++ |+.+
T Consensus 75 ~v~-i~---g~~i 83 (105)
T 2yan_A 75 QLY-VK---GELV 83 (105)
T ss_dssp EEE-ET---TEEE
T ss_pred eEE-EC---CEEE
Confidence 984 44 6643
No 414
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=72.14 E-value=19 Score=30.33 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=42.3
Q ss_pred ccEEEEEeecCChhHHHHHHHcCCCC--CcEEEEEeC-CCCceeEEEe-cCCChHHHHHHHHhhhhc
Q 013325 215 TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDP-ITGQKMRSWC-GMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 215 ~~FV~~~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p-~tg~~~~~~~-G~~~~~~~l~~L~~~~~~ 277 (445)
..++|..++.+..+...++..|++.. +|.++|++. ..+.. .... |.++++.+...+..+++-
T Consensus 63 gki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~K-y~~~~~~~t~~~i~~Fv~d~l~G 128 (147)
T 3bj5_A 63 GKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTK-YKPESEELTAERITEFCHRFLEG 128 (147)
T ss_dssp TTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEE-ECCSCCCCCHHHHHHHHHHHHTT
T ss_pred CceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEeccccccc-CCCCcccCCHHHHHHHHHHHHcC
Confidence 45666655765456566888999974 999999985 33432 1223 677888888777777763
No 415
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=71.70 E-value=19 Score=25.42 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=38.6
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCC-hhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEec
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s-~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G 260 (445)
+.+..++|..|+. + ..+|+ =.|... +++. ++.......|++..+|++.+ .|+. +.|
T Consensus 4 ~~y~~~~C~~C~~-~----------~~~l~~~~i~~~~~--di~~~~~~~~~~~~~~~~~vP~l~~----~g~~---~~g 63 (75)
T 1r7h_A 4 TLYTKPACVQCTA-T----------KKALDRAGLAYNTV--DISLDDEARDYVMALGYVQAPVVEV----DGEH---WSG 63 (75)
T ss_dssp EEEECTTCHHHHH-H----------HHHHHHTTCCCEEE--ETTTCHHHHHHHHHTTCBCCCEEEE----TTEE---EES
T ss_pred EEEeCCCChHHHH-H----------HHHHHHcCCCcEEE--ECCCCHHHHHHHHHcCCCccCEEEE----CCeE---EcC
Confidence 4456788998887 3 22333 245544 5543 33333345799999999873 3553 456
Q ss_pred CCChHHHHHHH
Q 013325 261 MVQPESLLEDL 271 (445)
Q Consensus 261 ~~~~~~~l~~L 271 (445)
. +++.+...|
T Consensus 64 ~-~~~~l~~~l 73 (75)
T 1r7h_A 64 F-RPERIKQLQ 73 (75)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 4 566554443
No 416
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=71.33 E-value=3.5 Score=37.03 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=34.7
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
.+|.+..+. ||+..-.|+..|..+|||++.|+..--..
T Consensus 5 ~~VKeLRe~-TGagmmdCKkAL~e~~GD~ekAie~LR~k 42 (196)
T 1aip_C 5 ELIKKLREA-TGAGMMDVKRALEDAGWDEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 478888999 99999999999999999999999987764
No 417
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=70.01 E-value=14 Score=29.41 Aligned_cols=63 Identities=5% Similarity=-0.062 Sum_probs=35.2
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC--hhH-HHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s--~eg-~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
+|.+..++|..|+. + +.+|..-.+. ..+|..+-++.+. .+. ..++..|++.++|.++ + +|+.+
T Consensus 21 vv~f~~~~Cp~C~~-~-~~~L~~~~~~---~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~-i---~g~~i 86 (114)
T 2hze_A 21 VTIFVKYTCPFCRN-A-LDILNKFSFK---RGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF-F---GKTSI 86 (114)
T ss_dssp EEEEECTTCHHHHH-H-HHHHTTSCBC---TTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE-E---TTEEE
T ss_pred EEEEEeCCChhHHH-H-HHHHHHcCCC---cCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE-E---CCEEE
Confidence 34456789999988 4 2333222111 0116665444332 122 3577889999999874 4 36654
No 418
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=69.68 E-value=11 Score=29.78 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=36.1
Q ss_pred HcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCC-hhH-HHHHHHcCCCCCcEEEEEe
Q 013325 178 VQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEG-KKVCTYYKLDSIPVVLVVD 248 (445)
Q Consensus 178 ~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s-~eg-~~~~~~y~v~~~P~l~ii~ 248 (445)
+..+ ++||..+ ++|..|+. ++.+|++ .|... +++. ++. ..+...++..++|.|+ |+
T Consensus 13 ~~~~-vvvy~~g~~~~~~Cp~C~~-----------ak~~L~~~~i~~~~v--di~~~~~~~~~l~~~~g~~~vP~if-i~ 77 (109)
T 1wik_A 13 NKAS-VMLFMKGNKQEAKCGFSKQ-----------ILEILNSTGVEYETF--DILEDEEVRQGLKTFSNWPTYPQLY-VR 77 (109)
T ss_dssp TTSS-EEEEESSTTTCCCSSTHHH-----------HHHHHHHTCSCEEEE--ESSSCHHHHHHHHHHHSCCSSCEEE-CS
T ss_pred ccCC-EEEEEecCCCCCCCchHHH-----------HHHHHHHcCCCeEEE--ECCCCHHHHHHHHHHhCCCCCCEEE-EC
Confidence 3444 6677775 78998887 3344443 45555 5543 332 3456677888999864 33
Q ss_pred CCCCcee
Q 013325 249 PITGQKM 255 (445)
Q Consensus 249 p~tg~~~ 255 (445)
|+.+
T Consensus 78 ---g~~i 81 (109)
T 1wik_A 78 ---GDLV 81 (109)
T ss_dssp ---SSEE
T ss_pred ---CEEE
Confidence 6643
No 419
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=69.13 E-value=16 Score=28.33 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=45.3
Q ss_pred EEEEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecC-ChhHHHHHHHc--CCCCCcEEEEEeCCCCceeE
Q 013325 183 LLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDD-TSEGKKVCTYY--KLDSIPVVLVVDPITGQKMR 256 (445)
Q Consensus 183 LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~-s~eg~~~~~~y--~v~~~P~l~ii~p~tg~~~~ 256 (445)
|.||- .++|..|.. ++++|+++ |... +++ ++++....... +..+.|.|+|-| |..+
T Consensus 6 I~vYs-~~~Cp~C~~-----------aK~~L~~~gi~y~~i--di~~d~~~~~~~~~~~~G~~tVP~I~i~D---g~~l- 67 (92)
T 2lqo_A 6 LTIYT-TSWCGYCLR-----------LKTALTANRIAYDEV--DIEHNRAAAEFVGSVNGGNRTVPTVKFAD---GSTL- 67 (92)
T ss_dssp EEEEE-CTTCSSHHH-----------HHHHHHHTTCCCEEE--ETTTCHHHHHHHHHHSSSSSCSCEEEETT---SCEE-
T ss_pred EEEEc-CCCCHhHHH-----------HHHHHHhcCCceEEE--EcCCCHHHHHHHHHHcCCCCEeCEEEEeC---CEEE-
Confidence 44444 468999987 45666654 4433 554 35555544332 567899987744 5443
Q ss_pred EEecCCChHHHHHHHHhhhh
Q 013325 257 SWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 257 ~~~G~~~~~~~l~~L~~~~~ 276 (445)
.| .+++++...|.+...
T Consensus 68 --~~-~~~~el~~~L~el~g 84 (92)
T 2lqo_A 68 --TN-PSADEVKAKLVKIAG 84 (92)
T ss_dssp --ES-CCHHHHHHHHHHHHC
T ss_pred --eC-CCHHHHHHHHHHhcC
Confidence 34 578888888877654
No 420
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=69.07 E-value=9.2 Score=31.48 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=44.0
Q ss_pred EECCCCc-eEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC
Q 013325 372 VRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 437 (445)
Q Consensus 372 iRlP~G~-r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~ 437 (445)
||+..|+ .+.-....++||..|-.-|... .+.+...-+|+.. ++. | +.++||.++|+.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~-~giPp~qQrLI~~--Gk~--L--eD~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPDEQRLYKD--DQL--L--DDGKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHH-HCCCHHHeEEEeC--CeE--C--CCcCCHHHcCCCc
Confidence 4444455 5667888999999999999875 3666777788843 443 4 5689999999965
No 421
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=68.86 E-value=8.9 Score=30.95 Aligned_cols=77 Identities=12% Similarity=0.177 Sum_probs=44.9
Q ss_pred CcccCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCCh--h-HHHHH
Q 013325 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDTS--E-GKKVC 233 (445)
Q Consensus 163 ~~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s~--e-g~~~~ 233 (445)
.|......+.++.+.+..+ ++| +..++|..|+. + ++.+|.+ .|..+-++.+.. + ...+.
T Consensus 8 ~~~~~~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~-a---------lk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~ 75 (118)
T 3c1r_A 8 HMVSQETIKHVKDLIAENE-IFV-ASKTYCPYCHA-A---------LNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALY 75 (118)
T ss_dssp CCSCHHHHHHHHHHHHHSS-EEE-EECSSCHHHHH-H---------HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHccCc-EEE-EEcCCCcCHHH-H---------HHHHHHHcCCCCCCeEEEECccCCChHHHHHHHH
Confidence 4555666666777766665 333 55678998887 3 1333332 345443333221 1 13467
Q ss_pred HHcCCCCCcEEEEEeCCCCcee
Q 013325 234 TYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 234 ~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
..|+..++|.| +++ |+.+
T Consensus 76 ~~~g~~tvP~v-fi~---g~~i 93 (118)
T 3c1r_A 76 EINGQRTVPNI-YIN---GKHI 93 (118)
T ss_dssp HHHSCCSSCEE-EET---TEEE
T ss_pred HHhCCCCcCEE-EEC---CEEE
Confidence 78999999987 444 6653
No 422
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=68.21 E-value=12 Score=28.98 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=34.4
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhcc---EEEEEeecCC--hhH-HHHHHHcCCCCCcEEEEEeCCCCcee
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTISTN---FIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~---FV~~~~~~~s--~eg-~~~~~~y~v~~~P~l~ii~p~tg~~~ 255 (445)
+.+..++|..|+. +. .+| +-+... |.++-++.+. ++. ..++..+++.++|.++ ++ |+.+
T Consensus 15 ~~f~~~~C~~C~~-~~-~~L------~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~-~~---g~~i 79 (105)
T 1kte_A 15 VVFIKPTCPFCRK-TQ-ELL------SQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF-IG---KECI 79 (105)
T ss_dssp EEEECSSCHHHHH-HH-HHH------HHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE-ET---TEEE
T ss_pred EEEEcCCCHhHHH-HH-HHH------HHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE-EC---CEEE
Confidence 3456789999988 42 111 112223 7776444432 222 3467789999999984 43 6554
No 423
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=68.14 E-value=4.1 Score=38.98 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=34.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
..+|.+..+. ||+..-.|+.-|..+|||+|.|++.--.
T Consensus 5 a~~VKeLRe~-TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRK-TGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3478889999 9999999999999999999999998876
No 424
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=66.88 E-value=14 Score=30.87 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhH-HHHHHHcCCC
Q 013325 168 SFEKAKDAASVQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLD 239 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg-~~~~~~y~v~ 239 (445)
...+.+....+..+ +.||..+ ++|..|.. ++++|++ .|..+-++.+ ++. ..+...++..
T Consensus 23 ~~~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~-----------ak~~L~~~gv~y~~vdI~~d-~~~~~~L~~~~G~~ 89 (135)
T 2wci_A 23 TTIEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQ-----------AVQALAACGERFAYVDILQN-PDIRAELPKYANWP 89 (135)
T ss_dssp HHHHHHHHHHHHCS-EEEEESBCSSSBSSHHHHH-----------HHHHHHTTCSCCEEEEGGGC-HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCC-EEEEEEecCCCCCCccHHH-----------HHHHHHHcCCceEEEECCCC-HHHHHHHHHHHCCC
Confidence 45666666666665 6678776 67887776 4455554 3555533332 333 3345556778
Q ss_pred CCcEEEEEeCCCCce
Q 013325 240 SIPVVLVVDPITGQK 254 (445)
Q Consensus 240 ~~P~l~ii~p~tg~~ 254 (445)
++|.|+ |+ |+.
T Consensus 90 tvP~Vf-I~---G~~ 100 (135)
T 2wci_A 90 TFPQLW-VD---GEL 100 (135)
T ss_dssp SSCEEE-ET---TEE
T ss_pred CcCEEE-EC---CEE
Confidence 999875 44 554
No 425
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=66.74 E-value=11 Score=27.49 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=39.6
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCC-hhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCC
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 262 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s-~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~ 262 (445)
++.+..++|..|+. +. .+|. -+.-.|.. ++++. ++.......|++..+|++ +++ |+. +.| .
T Consensus 3 v~~f~~~~C~~C~~-~~-~~l~------~~~i~~~~--vdi~~~~~~~~~~~~~g~~~vP~~-~~~---g~~---~~g-~ 64 (81)
T 1h75_A 3 ITIYTRNDCVQCHA-TK-RAME------NRGFDFEM--INVDRVPEAAEALRAQGFRQLPVV-IAG---DLS---WSG-F 64 (81)
T ss_dssp EEEEECTTCHHHHH-HH-HHHH------HTTCCCEE--EETTTCHHHHHHHHHTTCCSSCEE-EET---TEE---EES-C
T ss_pred EEEEcCCCChhHHH-HH-HHHH------HCCCCeEE--EECCCCHHHHHHHHHhCCCccCEE-EEC---CEE---Eec-C
Confidence 34567789999988 42 2221 12224544 46653 454544456899999998 443 553 445 3
Q ss_pred ChHHHHHHHHhhhh
Q 013325 263 QPESLLEDLVPFMD 276 (445)
Q Consensus 263 ~~~~~l~~L~~~~~ 276 (445)
++++ |.+.++
T Consensus 65 ~~~~----l~~~l~ 74 (81)
T 1h75_A 65 RPDM----INRLHP 74 (81)
T ss_dssp CHHH----HGGGSC
T ss_pred CHHH----HHHHHh
Confidence 4443 444444
No 426
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=66.10 E-value=2.8 Score=29.56 Aligned_cols=44 Identities=5% Similarity=0.104 Sum_probs=33.0
Q ss_pred hhhHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 7 ANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 7 ~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
..++.+.|.++.+|=-+.|.++-+..|.+++|+++.||+..++.
T Consensus 9 ~~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 9 ENERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 34567789999999888899999999999999999999887653
No 427
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=65.52 E-value=30 Score=25.75 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=40.8
Q ss_pred EeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChh-H----HHHHHHcCCCCCcEEEEEeCCCCceeEEEecC
Q 013325 187 LQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSE-G----KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 261 (445)
Q Consensus 187 l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~e-g----~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~ 261 (445)
++.++|..|+. . +. +.+-+.-.|...-++....+ . ..+...++..++|.+.+ .|+. +.|+
T Consensus 17 y~~~~Cp~C~~-~-~~------~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~----~g~~---i~G~ 81 (92)
T 3ic4_A 17 YGLSTCPHCKR-T-LE------FLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK----GDKH---VLGY 81 (92)
T ss_dssp EECTTCHHHHH-H-HH------HHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE----TTEE---EESC
T ss_pred EECCCChHHHH-H-HH------HHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE----CCEE---EeCC
Confidence 45678998887 3 11 12222335666544432322 1 45667888899999876 3543 4565
Q ss_pred CChHHHHHHH
Q 013325 262 VQPESLLEDL 271 (445)
Q Consensus 262 ~~~~~~l~~L 271 (445)
+++.+.+.|
T Consensus 82 -~~~~l~~~l 90 (92)
T 3ic4_A 82 -NEEKLKELI 90 (92)
T ss_dssp -CHHHHHHHH
T ss_pred -CHHHHHHHh
Confidence 777776655
No 428
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=65.06 E-value=45 Score=28.55 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=28.8
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 231 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 231 ~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
..++.+++...|+++ |+ |+.+ +.|. +.+.|...|...+.
T Consensus 146 ~~a~~~gv~gtPt~v-in---g~~~--~~g~-~~~~l~~~i~~~~~ 184 (193)
T 2rem_A 146 AYALKVRPVGTPTIV-VN---GRYM--VTGH-DFEDTLRITDYLVS 184 (193)
T ss_dssp HHHHHHCCSSSSEEE-ET---TTEE--ECCS-SHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEE-EC---CEEE--ecCC-CHHHHHHHHHHHHH
Confidence 456788999999954 44 6543 4677 88888888877765
No 429
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=63.87 E-value=35 Score=29.91 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=17.6
Q ss_pred CcEEEEEeCCCCceeEEEecC-------------CChHHHHHHHH
Q 013325 241 IPVVLVVDPITGQKMRSWCGM-------------VQPESLLEDLV 272 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~~~~~G~-------------~~~~~~l~~L~ 272 (445)
..+.+||+ .|.+...+... ..++++++.|.
T Consensus 136 ~R~tfvId--dG~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~ 178 (182)
T 1xiy_A 136 WRFVAIVE--NNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLK 178 (182)
T ss_dssp CCEEEEEE--TTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHH
T ss_pred EEEEEEEc--CCEEEEEEEeCCcccccccCcccCCCHHHHHHHHH
Confidence 45667776 67766555321 34667776664
No 430
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=63.43 E-value=9.3 Score=32.39 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=36.8
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 227 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 227 ~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
.+...+++.|++.++|+++| . +|+ .+.|..+++.|...|...+..+
T Consensus 96 ~~~~~la~~~gI~gtPt~vi-~--nG~---~i~G~~~~~~l~~~i~~~~~~~ 141 (147)
T 3gv1_A 96 AETTSLGEQFGFNGTPTLVF-P--NGR---TQSGYSPMPQLEEIIRKNQQEG 141 (147)
T ss_dssp HHHHHHHHHTTCCSSCEEEC-T--TSC---EEESCCCTTHHHHHHHHTSCC-
T ss_pred HHHHHHHHHhCCCccCEEEE-E--CCE---EeeCCCCHHHHHHHHHHHHHhc
Confidence 35577889999999999998 2 465 4789999999999888887654
No 431
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=61.48 E-value=19 Score=28.46 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhH-HHHHHHcCCCC
Q 013325 169 FEKAKDAASVQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLDS 240 (445)
Q Consensus 169 ~~eA~~~Ak~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg-~~~~~~y~v~~ 240 (445)
..+.++...+.++ ++||..+ ++|..|+. ++++|++ .|..+-++. .++. ..+....+..+
T Consensus 7 ~~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~-----------ak~~L~~~gi~~~~~dI~~-~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 7 LKDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNT-----------VVQILKNLNVPFEDVNILE-NEMLRQGLKEYSNWPT 73 (109)
T ss_dssp HHHHHHHHHTSSS-EEEEESBCSSSBSSHHHHH-----------HHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHccCC-EEEEEecCCCCCCChhHHH-----------HHHHHHHcCCCcEEEECCC-CHHHHHHHHHHHCCCC
Confidence 4455555556665 6677776 47887776 4555554 355553332 2333 34555567789
Q ss_pred CcEEEE
Q 013325 241 IPVVLV 246 (445)
Q Consensus 241 ~P~l~i 246 (445)
+|.|+|
T Consensus 74 vP~ifi 79 (109)
T 3ipz_A 74 FPQLYI 79 (109)
T ss_dssp SCEEEE
T ss_pred CCeEEE
Confidence 997753
No 432
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=60.46 E-value=22 Score=25.67 Aligned_cols=53 Identities=6% Similarity=0.057 Sum_probs=30.6
Q ss_pred EEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 185 VNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 185 V~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
+.++.++|..|+. + +.+|. -..-.|...-++.+......+...+++..+|.+.
T Consensus 4 ~~y~~~~C~~C~~-~-~~~l~------~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 4 EIYTKETCPYCHR-A-KALLS------SKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp EEEECSSCHHHHH-H-HHHHH------HHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred EEEECCCChhHHH-H-HHHHH------HCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 3346678998887 3 22221 1222455553333223334577788999999984
No 433
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=60.02 E-value=27 Score=28.32 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhcc------EEEEEeecCChhHH-HHHHHcCC
Q 013325 170 EKAKDAASVQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTISTN------FIFWQVYDDTSEGK-KVCTYYKL 238 (445)
Q Consensus 170 ~eA~~~Ak~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~~------FV~~~~~~~s~eg~-~~~~~y~v 238 (445)
.+.++...+.++ ++||..+ ++|..|.. ++++|+++ |..+-++. .++.. .+....+.
T Consensus 6 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~-----------ak~lL~~~gv~~~~~~~~dv~~-~~~~~~~l~~~sg~ 72 (121)
T 3gx8_A 6 RKAIEDAIESAP-VVLFMKGTPEFPKCGFSRA-----------TIGLLGNQGVDPAKFAAYNVLE-DPELREGIKEFSEW 72 (121)
T ss_dssp HHHHHHHHHSCS-EEEEESBCSSSBCTTHHHH-----------HHHHHHHHTBCGGGEEEEECTT-CHHHHHHHHHHHTC
T ss_pred HHHHHHHhccCC-EEEEEeccCCCCCCccHHH-----------HHHHHHHcCCCcceEEEEEecC-CHHHHHHHHHHhCC
Confidence 344555555555 6677776 47887776 34555542 55553332 23333 34445677
Q ss_pred CCCcEEEE
Q 013325 239 DSIPVVLV 246 (445)
Q Consensus 239 ~~~P~l~i 246 (445)
.++|.|+|
T Consensus 73 ~tvP~vfI 80 (121)
T 3gx8_A 73 PTIPQLYV 80 (121)
T ss_dssp CSSCEEEE
T ss_pred CCCCeEEE
Confidence 88999854
No 434
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=59.92 E-value=19 Score=31.66 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
...+..+++...|+++|.. +|+.+..+.|..+++.|...|...+..+
T Consensus 166 ~~~a~~~gv~g~Pt~~i~~--~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 166 FQRVAQWGISGFPALVVES--GTDRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcccceEEEEE--CCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 4567789999999998765 5776667889999999999888887653
No 435
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=59.71 E-value=13 Score=27.92 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=29.6
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCC-hh-HHHHHHHcCCCCCcEE
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDT-SE-GKKVCTYYKLDSIPVV 244 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s-~e-g~~~~~~y~v~~~P~l 244 (445)
++.++.++|..|+. + +.+|++ .|... +++. ++ ...+...++...+|.+
T Consensus 8 v~ly~~~~C~~C~~-~----------~~~L~~~~i~~~~~--di~~~~~~~~~l~~~~~~~~vP~l 60 (92)
T 2khp_A 8 VIIYTRPGCPYCAR-A----------KALLARKGAEFNEI--DASATPELRAEMQERSGRNTFPQI 60 (92)
T ss_dssp EEEEECTTCHHHHH-H----------HHHHHHTTCCCEEE--ESTTSHHHHHHHHHHHTSSCCCEE
T ss_pred EEEEECCCChhHHH-H----------HHHHHHcCCCcEEE--ECCCCHHHHHHHHHHhCCCCcCEE
Confidence 34456788998887 3 333433 45555 5543 22 3456778889999965
No 436
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=59.41 E-value=18 Score=26.67 Aligned_cols=57 Identities=7% Similarity=-0.054 Sum_probs=33.0
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCCh--hHHHHHHHcCC-----CCCcEEEEEeCCCCc
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTS--EGKKVCTYYKL-----DSIPVVLVVDPITGQ 253 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~--eg~~~~~~y~v-----~~~P~l~ii~p~tg~ 253 (445)
++.++.++|..|+. . +.+|++ .|-...++.... ....+...++. .++|.+.+ +|+
T Consensus 6 v~ly~~~~Cp~C~~-~----------~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i----~g~ 70 (89)
T 3msz_A 6 VKIYTRNGCPYCVW-A----------KQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI----DDE 70 (89)
T ss_dssp EEEEECTTCHHHHH-H----------HHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE----TTE
T ss_pred EEEEEcCCChhHHH-H----------HHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE----CCE
Confidence 34456678998887 3 333433 355443343322 12456777777 89999964 366
Q ss_pred ee
Q 013325 254 KM 255 (445)
Q Consensus 254 ~~ 255 (445)
.+
T Consensus 71 ~i 72 (89)
T 3msz_A 71 HI 72 (89)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 437
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=56.25 E-value=21 Score=28.95 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc----cEEEEEeecCC-hhHHH-HHHHcC
Q 013325 168 SFEKAKDAASVQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST----NFIFWQVYDDT-SEGKK-VCTYYK 237 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~----~FV~~~~~~~s-~eg~~-~~~~y~ 237 (445)
...+.++...++++ ++||..+ ++|..|.. ++++|++ .|..+ +++. ++... +....+
T Consensus 8 ~~~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~-----------ak~lL~~~gv~~~~~v--dV~~d~~~~~~l~~~tg 73 (118)
T 2wem_A 8 GSAEQLDALVKKDK-VVVFLKGTPEQPQCGFSNA-----------VVQILRLHGVRDYAAY--NVLDDPELRQGIKDYSN 73 (118)
T ss_dssp -CHHHHHHHHHHSS-EEEEESBCSSSBSSHHHHH-----------HHHHHHHTTCCCCEEE--ESSSCHHHHHHHHHHHT
T ss_pred cHHHHHHHHhccCC-EEEEEecCCCCCccHHHHH-----------HHHHHHHcCCCCCEEE--EcCCCHHHHHHHHHHhC
Confidence 44555666666665 6677776 47877766 4555554 25555 4433 34433 344456
Q ss_pred CCCCcEEEE
Q 013325 238 LDSIPVVLV 246 (445)
Q Consensus 238 v~~~P~l~i 246 (445)
..++|.|+|
T Consensus 74 ~~tvP~vfI 82 (118)
T 2wem_A 74 WPTIPQVYL 82 (118)
T ss_dssp CCSSCEEEE
T ss_pred CCCcCeEEE
Confidence 778999853
No 438
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=52.63 E-value=55 Score=31.86 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=50.7
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCC---CcccCCCCcCCchhhcCCc
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG---ATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr---~~~~l~~~~~~Tl~e~gL~ 436 (445)
....+.|.||||+...-.+..+.++++|++-|...+.-....-|.|...-+. .....-.+.++++.+-+..
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 4578999999999999999999999999999988764334667888765441 1111234567888877654
No 439
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=51.98 E-value=29 Score=25.72 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=31.2
Q ss_pred EEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHc-CCCCCcEEE
Q 013325 184 LVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY-KLDSIPVVL 245 (445)
Q Consensus 184 lV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y-~v~~~P~l~ 245 (445)
++.++.++|..|+. + +.+|. -..-.|... +++......+...+ ++.++|.+.
T Consensus 8 v~~y~~~~C~~C~~-~-~~~L~------~~~i~~~~v--dv~~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 8 IILYTRPNCPYCKR-A-RDLLD------KKGVKYTDI--DASTSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp EEEESCSCCTTTHH-H-HHHHH------HHTCCEEEE--CSCHHHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHH-H-HHHHH------HcCCCcEEE--ECCHHHHHHHHHHhCCCCCcCEEE
Confidence 44556788999987 3 22221 122245544 55522234577778 999999985
No 440
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=50.05 E-value=43 Score=32.05 Aligned_cols=84 Identities=11% Similarity=0.098 Sum_probs=47.4
Q ss_pred EeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCChhHHHHH----HHcCCC-CCcEEEEEeCCCCceeEE-E
Q 013325 187 LQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVC----TYYKLD-SIPVVLVVDPITGQKMRS-W 258 (445)
Q Consensus 187 l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~eg~~~~----~~y~v~-~~P~l~ii~p~tg~~~~~-~ 258 (445)
+.+.++..|.. +. +.|. .|..-.+. .+.|.-++.+ +-..++ +.++++ .+|.++|+++.+|..... +
T Consensus 252 f~~~~~~~~~~-~~-~~~~--~vA~~~~~~~~~~f~~id~~--~~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~ 325 (350)
T 1sji_A 252 FAERSDPDGYE-FL-EILK--QVARDNTDNPDLSIVWIDPD--DFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEI 325 (350)
T ss_dssp ECCTTSHHHHH-HH-HHHH--HHHHHGGGCSSCCEEEECGG--GCHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCS
T ss_pred EEcCCCccHHH-HH-HHHH--HHHHHhCCCCceEEEEECch--hhHHHHHHHHhhcCCCccCCcEEEEecccccccccCC
Confidence 55555554555 32 2221 23333332 4444434443 223345 678887 589999999876643321 2
Q ss_pred ---ecCCChHHHHHHHHhhhh
Q 013325 259 ---CGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 259 ---~G~~~~~~~l~~L~~~~~ 276 (445)
.|..+++.+.+.|..+++
T Consensus 326 ~~~~~~~~~~~i~~F~~d~~~ 346 (350)
T 1sji_A 326 PDDDDLPTAEELEDWIEDVLS 346 (350)
T ss_dssp SCCSCCCCHHHHHHHHHHHHT
T ss_pred CcccccCCHHHHHHHHHHHhc
Confidence 246788888877777765
No 441
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=48.47 E-value=31 Score=30.32 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
...+..+++...|+++|-+ +|+.+....|..+++.|++.|...+..
T Consensus 159 ~~~a~~~gv~g~Pt~~v~~--~~~~~~~~~g~~~~e~~~~~i~~~~~~ 204 (208)
T 3kzq_A 159 LSLAKSLGVNSYPSLVLQI--NDAYFPIEVDYLSTEPTLKLIRERIIE 204 (208)
T ss_dssp HHHHHHTTCCSSSEEEEEE--TTEEEEECCCSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHhc
Confidence 3456789999999998865 467776778999999999999888763
No 442
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=47.03 E-value=17 Score=29.99 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 013325 12 SMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNES 53 (445)
Q Consensus 12 ~~v~~F~~iTt~~~~~~A~~~L~~~~w-~le~Av~~~~~~~~~ 53 (445)
+.|.+.+++ |-+...|+.-|..+++ |++.|++-.++..+.
T Consensus 5 ~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 5 SSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp HHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 478899999 9999999999999976 999999999886543
No 443
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=46.14 E-value=54 Score=25.85 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCC-hhH----HHHHHHcCCCC
Q 013325 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEG----KKVCTYYKLDS 240 (445)
Q Consensus 169 ~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s-~eg----~~~~~~y~v~~ 240 (445)
..+.++...+.++.+ | +..++|..|+. ++.+|++ .|-.+ +++. .++ ..+...++..+
T Consensus 6 ~~~~~~~~i~~~~v~-v-y~~~~Cp~C~~-----------ak~~L~~~~i~~~~~--dvd~~~~~~~~~~~l~~~~g~~t 70 (114)
T 3h8q_A 6 LRRHLVGLIERSRVV-I-FSKSYCPHSTR-----------VKELFSSLGVECNVL--ELDQVDDGARVQEVLSEITNQKT 70 (114)
T ss_dssp HHHHHHHHHHHCSEE-E-EECTTCHHHHH-----------HHHHHHHTTCCCEEE--ETTTSTTHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHhccCCEE-E-EEcCCCCcHHH-----------HHHHHHHcCCCcEEE--EecCCCChHHHHHHHHHHhCCCc
Confidence 344555566666643 4 44578998887 3344443 45555 4443 222 23456778889
Q ss_pred CcEEEEEeCCCCcee
Q 013325 241 IPVVLVVDPITGQKM 255 (445)
Q Consensus 241 ~P~l~ii~p~tg~~~ 255 (445)
+|.+.| +|+.+
T Consensus 71 vP~vfi----~g~~i 81 (114)
T 3h8q_A 71 VPNIFV----NKVHV 81 (114)
T ss_dssp SCEEEE----TTEEE
T ss_pred cCEEEE----CCEEE
Confidence 999975 46654
No 444
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=45.50 E-value=37 Score=26.29 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=32.3
Q ss_pred eEEEEEeCCCCcchhhhhhhcccCChhHHHHhh---ccEEEEEeecCC-hhH-HHHHHHc-CCCCCcEEEEEeCCCCcee
Q 013325 182 WLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIS---TNFIFWQVYDDT-SEG-KKVCTYY-KLDSIPVVLVVDPITGQKM 255 (445)
Q Consensus 182 ~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~---~~FV~~~~~~~s-~eg-~~~~~~y-~v~~~P~l~ii~p~tg~~~ 255 (445)
.+.|| ..++|..|.. . +.+|+ -.|... +++. ++. ..+...+ +..++|.++ |+ |+.+
T Consensus 17 ~v~vy-~~~~Cp~C~~-a----------k~~L~~~~i~y~~i--dI~~~~~~~~~l~~~~~g~~~vP~if-i~---g~~i 78 (99)
T 3qmx_A 17 KIEIY-TWSTCPFCMR-A----------LALLKRKGVEFQEY--CIDGDNEAREAMAARANGKRSLPQIF-ID---DQHI 78 (99)
T ss_dssp CEEEE-ECTTCHHHHH-H----------HHHHHHHTCCCEEE--ECTTCHHHHHHHHHHTTTCCCSCEEE-ET---TEEE
T ss_pred CEEEE-EcCCChhHHH-H----------HHHHHHCCCCCEEE--EcCCCHHHHHHHHHHhCCCCCCCEEE-EC---CEEE
Confidence 34444 4567999987 3 33333 246555 4443 333 3355666 888999884 44 6543
No 445
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=44.58 E-value=49 Score=28.90 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=23.1
Q ss_pred CCeEEEE-EeCCCCcchhh-hhhhcccCChhHHHHhhccE-EEEEeecCChhH
Q 013325 180 DKWLLVN-LQSTKEFSSHM-VLNRDTWANEAVSQTISTNF-IFWQVYDDTSEG 229 (445)
Q Consensus 180 ~K~LlV~-l~~~~~f~~~~-~~~rdv~~~~~V~~~l~~~F-V~~~~~~~s~eg 229 (445)
+||++|+ +-..+|+.|.. =++. -++...+|-..++ .+++++.+++..
T Consensus 47 Gk~vVL~fyP~~~tp~Ct~~El~~---f~~~~~ef~~~g~d~VigIS~D~~~~ 96 (176)
T 4f82_A 47 GKRVVIFGLPGAFTPTCSAQHVPG---YVEHAEQLRAAGIDEIWCVSVNDAFV 96 (176)
T ss_dssp TCEEEEEEESCTTCHHHHHTHHHH---HHHHHHHHHHTTCCEEEEEESSCHHH
T ss_pred CCeEEEEEEcCCCCCCCCHHHHHH---HHHHHHHHHhCCCCEEEEEeCCCHHH
Confidence 4655444 44567776632 0210 1122233333456 677777777554
No 446
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=44.43 E-value=26 Score=33.63 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=35.1
Q ss_pred CCChhhHHHHHHhhhccc------cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 4 VLSANDKQSMVSSFLEIA------VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iT------t~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
.||+.|++ .|++|.+.- ...|......||.+++||++.|...+-+
T Consensus 34 ~lt~~q~~-~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 34 NLTKEQEE-ALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp CCCHHHHH-HHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46777744 777776542 2468889999999999999999998854
No 447
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=42.62 E-value=41 Score=27.85 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=34.6
Q ss_pred CchHHHHHHHHhhcCCCCCcCeEEE-cCCCCCc--ccCCCCcCCchhhcCCcCceEEE
Q 013325 388 DPIQLLWSYCYSQLEGSEMKPFRLT-HAIPGAT--KSLDYDSKLTFEDSGLANAMISV 442 (445)
Q Consensus 388 d~l~~l~~fv~~~~~~~~~~~f~L~-~~fPr~~--~~l~~~~~~Tl~e~gL~~~~v~v 442 (445)
-||..|.+.+..++ +|.. .|.+. ++=-|-. +.+.+..++||.++|+.+++++.
T Consensus 20 ~TL~dLV~~l~~~~-gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLt 75 (127)
T 3onh_A 20 MKLSDFVVLIREKY-SYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIIL 75 (127)
T ss_dssp CBHHHHHHHHHHHH-TCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEE
T ss_pred cCHHHHHHHHHHhc-CCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEE
Confidence 48999999987764 6543 78877 2211111 12334468999999999776554
No 448
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=42.24 E-value=42 Score=31.69 Aligned_cols=68 Identities=16% Similarity=-0.019 Sum_probs=47.7
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcC
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSG 434 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~g 434 (445)
....+.|.||||+.+.-.+..+.+.++|++-|...+.-.+..-|-|.-.-+... ..-.+.+++|.+..
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATS-KTWLDSAKEIKKQV 83 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTE-EEECCTTSBHHHHC
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCc-cchhccchhHHHhc
Confidence 468899999999999999999999999999998876433445576654222111 12245667776653
No 449
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=42.13 E-value=44 Score=27.29 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCCh--hH-HHHHHHcCC
Q 013325 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDTS--EG-KKVCTYYKL 238 (445)
Q Consensus 168 s~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s~--eg-~~~~~~y~v 238 (445)
...+.++......+ +.|| ..++|..|.. . ++.+|.+ .|..+-++.+.. +. ..+...++.
T Consensus 25 ~~~~~v~~~i~~~~-Vvvy-~~~~Cp~C~~-a---------~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~ 92 (129)
T 3ctg_A 25 ETVAHVKDLIGQKE-VFVA-AKTYCPYCKA-T---------LSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQ 92 (129)
T ss_dssp HHHHHHHHHHHHSS-EEEE-ECTTCHHHHH-H---------HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCC-EEEE-ECCCCCchHH-H---------HHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCC
Confidence 44555555555665 4455 4578998887 2 2444432 355554444321 11 346777888
Q ss_pred CCCcEEEEEeCCCCcee
Q 013325 239 DSIPVVLVVDPITGQKM 255 (445)
Q Consensus 239 ~~~P~l~ii~p~tg~~~ 255 (445)
.++|.|+ |+ |+.+
T Consensus 93 ~tVP~vf-i~---g~~i 105 (129)
T 3ctg_A 93 KTVPNVY-IN---GKHI 105 (129)
T ss_dssp CSSCEEE-ET---TEEE
T ss_pred CCCCEEE-EC---CEEE
Confidence 9999974 44 5543
No 450
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=41.74 E-value=51 Score=32.10 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=53.5
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCC---CCcCeEEEc--CCCCCcccCCCCcCCchhhcCCcCc
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS---EMKPFRLTH--AIPGATKSLDYDSKLTFEDSGLANA 438 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~---~~~~f~L~~--~fPr~~~~l~~~~~~Tl~e~gL~~~ 438 (445)
...+.|+++ +...+-+|..+.+|.++-..|..++++. +...|-|.- ..|++. .-.+.++||+..|+.+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~--~Wl~~~~~l~~y~~~~~ 76 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKG--IWLEAGKALDYYMLRNG 76 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGC--EECCTTSBGGGGTCCTT
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcC--EeccCCCCHHHhCCCCC
Confidence 357888888 7788899999999999999998876542 577888876 445553 33466889999999753
No 451
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=40.69 E-value=18 Score=25.12 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHhhhccccCCCHHHH--HHHHHHcCCCHHHHHHHHh
Q 013325 11 QSMVSSFLEIAVGQTAETA--VQFLQATSWKLDEAIQLFY 48 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A--~~~L~~~~w~le~Av~~~~ 48 (445)
.+.|.|.+++ |-+.+-+ .++|+..|+|+..|++..-
T Consensus 11 ~~al~qMl~M--GF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSM--GFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTT--TCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 4578888888 5554444 6999999999999998753
No 452
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=40.63 E-value=55 Score=25.00 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=35.6
Q ss_pred CChhhHHHH---HHhhhccccC-CCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013325 5 LSANDKQSM---VSSFLEIAVG-QTAETAVQFLQATSWKLDEAIQLFYVG 50 (445)
Q Consensus 5 l~~~~~~~~---v~~F~~iTt~-~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (445)
||..++..+ |.+..+|.+. +++.+.+...-++++|++.|++.+++.
T Consensus 26 Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 26 LSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 566555433 5677778444 378999999999999999999999985
No 453
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=40.44 E-value=79 Score=29.82 Aligned_cols=69 Identities=16% Similarity=-0.028 Sum_probs=50.2
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
...+.+.|.|+|| .+.-.+..+.++++|++-|...+.=.+..-|-|... .... ..-.+.+++|.+.+..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~-~~wL~~~~~i~~q~~~ 88 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDT-VAWLKMDKKVLDHDVS 88 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTE-EEECCTTSBGGGSSCC
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCc-CeeCCCccCHHHcCCC
Confidence 3568899999999 688899999999999999888764334556777654 3322 2235678888887654
No 454
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=40.03 E-value=32 Score=29.89 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=32.9
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
...++.+++...|+++| +|+.+-...|..+.+.|...|...+.
T Consensus 142 ~~~a~~~gv~GtPtfvv----ng~~~v~~~Ga~~~e~~~~~i~~ll~ 184 (185)
T 3feu_A 142 KMLSEKSGISSVPTFVV----NGKYNVLIGGHDDPKQIADTIRYLLE 184 (185)
T ss_dssp HHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCccCEEEE----CCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 45577899999999986 57655344788899999888876654
No 455
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=38.39 E-value=1e+02 Score=29.82 Aligned_cols=103 Identities=10% Similarity=0.112 Sum_probs=54.5
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCCcc-hhhhhhhcccCChhHHHHh---hccEEEEEeecCChhHHHHHHHcCCC
Q 013325 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFS-SHMVLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLD 239 (445)
Q Consensus 164 ~~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~-~~~~~~rdv~~~~~V~~~l---~~~FV~~~~~~~s~eg~~~~~~y~v~ 239 (445)
+-.-+.+.+.... ..+++++|.+...++.. ++. |. ..+.+.. +..+.|..++.+ +-..++..++++
T Consensus 221 v~elt~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~-~~------~~~~~~~~~~~~~i~f~~id~~--~~~~~~~~~gl~ 290 (382)
T 2r2j_A 221 VREITFENGEELT-EEGLPFLILFHMKEDTESLEI-FQ------NEVARQLISEKGTINFLHADCD--KFRHPLLHIQKT 290 (382)
T ss_dssp SEECCHHHHHHHH-TTCCCEEEEEECTTCCHHHHH-HH------HHHHHHTGGGTTTSEEEEEETT--TTHHHHHHTTCC
T ss_pred eEecChhhHHHHh-cCCCcEEEEEecCCchHHHHH-HH------HHHHHHHHHhCCeeEEEEEchH--HhHHHHHHcCCC
Confidence 3444555554443 45677777666655432 233 21 1222211 234555544544 334567888886
Q ss_pred --CCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 240 --SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 240 --~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.+|.++|++...+-......|..+++.+...|..+++
T Consensus 291 ~~~~P~i~i~~~~~~y~~~~~~~~~~~~~i~~F~~d~~~ 329 (382)
T 2r2j_A 291 PADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHS 329 (382)
T ss_dssp GGGCSEEEEECSSCEEECCCSGGGGSTTHHHHHHHHHHH
T ss_pred ccCCCEEEEEcchhcCCCCccccccCHHHHHHHHHHHHC
Confidence 6999999885322111112344466777777777766
No 456
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=38.26 E-value=35 Score=28.81 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=30.2
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
...++.++|.+.|+++| +|+.+....|..+.++|++.+...+.
T Consensus 140 ~~~a~~~gv~gTPtfiI----NGky~v~~~~~~s~e~~~~~i~~Ll~ 182 (184)
T 4dvc_A 140 DKQFQDSGLTGVPAVVV----NNRYLVQGQSAKSLDEYFDLVNYLLT 182 (184)
T ss_dssp HHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcCCEEEE----CCEEeeCCcCCCCHHHHHHHHHHHHh
Confidence 45678899999999875 57654333456688888877665543
No 457
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=36.83 E-value=26 Score=30.25 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=29.0
Q ss_pred hHHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHH
Q 013325 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLF 47 (445)
Q Consensus 9 ~~~~~v~~F~~iTt~~~~~~A~~~L~~~~w~le~Av~~~ 47 (445)
++..++.+.++. +..+.+.+...|..+++|++.|+...
T Consensus 101 ~R~~K~~eL~s~-G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 101 TRRRKVQELQSL-GFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHHT-TCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 345577777887 67788888888888888888887654
No 458
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.78 E-value=39 Score=23.63 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHhc
Q 013325 11 QSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYV 49 (445)
Q Consensus 11 ~~~v~~F~~iTt~~~~~~A~~~L~~~~w-~le~Av~~~~~ 49 (445)
...+++.+++ |.+.+.|...|+.+|. .|+.|++-..-
T Consensus 10 ~qmlq~L~eM--GFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 10 RQMLQELVNA--GCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3468889999 9999999999999985 59999986554
No 459
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=36.77 E-value=7.3 Score=34.83 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcCceEEE
Q 013325 369 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 442 (445)
Q Consensus 369 ~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~v~v 442 (445)
.|-||.++|+.++-....++||..|-.-|... .+.+....+|+. -.+. | +.+.||. ..++|.+
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~k-eGIP~~qQRLIf--~GK~--L--eD~~TLs----~~STLhL 64 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQD-MGFEIDMMTLVN--NGFI--A--PNTELVT----DDVTYYL 64 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCcChhHEEEEe--cCeE--C--CCCCccc----CCCEEEE
Confidence 47789999999988999999999999999875 455666777764 3553 4 3357777 4455543
No 460
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=36.58 E-value=24 Score=31.37 Aligned_cols=72 Identities=7% Similarity=-0.041 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
+++.+.++..++.+|+++|++-.- ..+=.+..-..|| +++=.+++--....+...++.+++...|.+++
T Consensus 43 ~~L~~iv~~ik~~gK~vivh~DlI----------~GLs~d~~ai~fL-~~~~pdGIIsTk~~~i~~Akk~GL~tIqR~Fl 111 (188)
T 1vkf_A 43 LNLKFHLKILKDRGKTVFVDMDFV----------NGLGEGEEAILFV-KKAGADGIITIKPKNYVVAKKNGIPAVLRFFA 111 (188)
T ss_dssp TTHHHHHHHHHHTTCEEEEEGGGE----------ETCCSSHHHHHHH-HHHTCSEEEESCHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEecCcc----------cccCCCHHHHHHH-HhcCCCEEEcCcHHHHHHHHHcCCEEeeEEEE
Confidence 469999999999999999976432 2223456677788 43333333334567788899999999999999
Q ss_pred EeC
Q 013325 247 VDP 249 (445)
Q Consensus 247 i~p 249 (445)
||-
T Consensus 112 iDs 114 (188)
T 1vkf_A 112 LDS 114 (188)
T ss_dssp CSH
T ss_pred EEe
Confidence 993
No 461
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=36.39 E-value=20 Score=32.78 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=28.5
Q ss_pred CCChhhHHHHHHhhhccc---------cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 4 VLSANDKQSMVSSFLEIA---------VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iT---------t~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
.||+.+++ .|++|.+.. ...|......||.+++||++.|...+-+
T Consensus 3 ~ls~~~~~-~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~ 56 (262)
T 1r5l_A 3 HMSPLLQP-GLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKN 56 (262)
T ss_dssp ------CT-THHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666543 555554331 1258899999999999999999997754
No 462
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=36.36 E-value=1.6e+02 Score=28.32 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=52.6
Q ss_pred CCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc--cEEEEEeecCCh-hHHH-HHHHcCCC-CCcEEEEEeCCCCce
Q 013325 180 DKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST--NFIFWQVYDDTS-EGKK-VCTYYKLD-SIPVVLVVDPITGQK 254 (445)
Q Consensus 180 ~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~--~FV~~~~~~~s~-eg~~-~~~~y~v~-~~P~l~ii~p~tg~~ 254 (445)
.++++|.+.+.++..+.. +.. .+ ..|.+-.+. .+.|.-++.+.. .... +...+++. .+|.++|+++.++..
T Consensus 247 ~~~~~~~f~~~~~~~~~~-~~~-~l--~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~ 322 (367)
T 3us3_A 247 DGIHIVAFAEEADPDGYE-FLE-IL--KSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADS 322 (367)
T ss_dssp TTEEEEEECCTTSHHHHH-HHH-HH--HHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCE
T ss_pred CCcEEEEEEcCCChhHHH-HHH-HH--HHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEecccccc
Confidence 345555565555554555 322 11 223333333 355554455432 1222 24567776 799999999876632
Q ss_pred e-EEEec---CCChHHHHHHHHhhhhc
Q 013325 255 M-RSWCG---MVQPESLLEDLVPFMDG 277 (445)
Q Consensus 255 ~-~~~~G---~~~~~~~l~~L~~~~~~ 277 (445)
. ..+.+ .++++.+...|..+++-
T Consensus 323 ~~y~~~~~~~~~t~~~i~~F~~~~~~G 349 (367)
T 3us3_A 323 VWMEMDDEEDLPSAEELEDWLEDVLEG 349 (367)
T ss_dssp EECCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred eeecCCcccccCCHHHHHHHHHHHHcC
Confidence 2 22343 57899888888888773
No 463
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.77 E-value=1.1e+02 Score=32.03 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=49.4
Q ss_pred CceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 366 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 366 ~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
..+.|.|.|+|| .+.-.+..+.++++|++-|...+.-....-|.|.-.-+... ....+.+++|.+.++.
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~-~~WLd~~k~i~~q~~~ 71 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGD-LTWIKLYKKVMQQDVK 71 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSC-EEECCTTSBGGGSCBC
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcc-hhHhhccccHHHhccc
Confidence 467899999999 57788899999999999988876433455677754323332 2235678888887654
No 464
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=35.71 E-value=49 Score=30.94 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=34.2
Q ss_pred CCChhhHHHHHHhhhccc------cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 4 VLSANDKQSMVSSFLEIA------VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 4 ~l~~~~~~~~v~~F~~iT------t~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
.|++.+ ++.|++|.+.. -..|......||.+++||++.|...+-+
T Consensus 25 ~l~~~q-~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 25 NLDSAQ-EKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp TCCTTH-HHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466666 44777775532 2357899999999999999999988744
No 465
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=33.92 E-value=91 Score=24.56 Aligned_cols=65 Identities=9% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCeEEEEEeC----CCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCChhHHH-HHHHcCCCC
Q 013325 169 FEKAKDAASVQDKWLLVNLQS----TKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKK-VCTYYKLDS 240 (445)
Q Consensus 169 ~~eA~~~Ak~~~K~LlV~l~~----~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s~eg~~-~~~~y~v~~ 240 (445)
..+.++...+.+ +++||..+ ++|..|.. ++++|++ .|..+-++. .++... +....+..+
T Consensus 5 ~~~~v~~~i~~~-~Vvlf~kg~~~~~~Cp~C~~-----------ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~t 71 (111)
T 3zyw_A 5 LNLRLKKLTHAA-PCMLFMKGTPQEPRCGFSKQ-----------MVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPT 71 (111)
T ss_dssp HHHHHHHHHTSS-SEEEEESBCSSSBSSHHHHH-----------HHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhcC-CEEEEEecCCCCCcchhHHH-----------HHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCC
Confidence 455555555555 45577652 56887776 3455554 366553333 244433 444557788
Q ss_pred CcEEEE
Q 013325 241 IPVVLV 246 (445)
Q Consensus 241 ~P~l~i 246 (445)
+|.|.|
T Consensus 72 vP~ifi 77 (111)
T 3zyw_A 72 YPQLYV 77 (111)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 999864
No 466
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=33.76 E-value=1.1e+02 Score=27.54 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=36.6
Q ss_pred EEEEEeecCChhHHHHHHHcCC----CCCcEEEEEeCCCCceeEEEecCCChHH--HHHHHHhhhh
Q 013325 217 FIFWQVYDDTSEGKKVCTYYKL----DSIPVVLVVDPITGQKMRSWCGMVQPES--LLEDLVPFMD 276 (445)
Q Consensus 217 FV~~~~~~~s~eg~~~~~~y~v----~~~P~l~ii~p~tg~~~~~~~G~~~~~~--~l~~L~~~~~ 276 (445)
+.|.-++.+ +-..+...|++ ..+|.|+|++. .+.+ ..+.+.++.+. +...+..+++
T Consensus 169 ~~F~~~d~~--~~~~~~~~fgl~~~~~~~P~v~i~~~-~~~k-y~~~~~~t~~~~~i~~F~~~~~~ 230 (252)
T 2h8l_A 169 LNFAVASRK--TFSHELSDFGLESTAGEIPVVAIRTA-KGEK-FVMQEEFSRDGKALERFLQDYFD 230 (252)
T ss_dssp CEEEEEETT--TTHHHHGGGTCCCCSCSSCEEEEECT-TSCE-EECCSCCCTTSHHHHHHHHHHHH
T ss_pred EEEEEEchH--HHHHHHHHcCCCCccCCCCEEEEEeC-cCcE-ecCCcccCcchHHHHHHHHHHHC
Confidence 655545654 32347888888 36999999985 4442 33456667666 7777777765
No 467
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=33.48 E-value=1.3e+02 Score=27.98 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=47.8
Q ss_pred eEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 368 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 368 ~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
+.|.|.|+|| .+.-.+..+.++++|++-|...+.=.+..-|.|.-.-+... ..-.+.+++|.+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~~~l~~q~~~ 68 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGF-STWLKLNKKVTAQDVR 68 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSC-EEECCSSSBGGGSCBC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCc-eeecccccCHHhhccC
Confidence 5789999999 57788899999999999998876433455677765323322 1224678888887654
No 468
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=32.23 E-value=50 Score=28.22 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
...+..+++...|+++| +|+. +.|..+++.|...|...+.
T Consensus 139 ~~~a~~~gv~GtPt~vv----nG~~---~~G~~~~~~l~~~i~~~~~ 178 (186)
T 3bci_A 139 KKIAKDNHIKTTPTAFI----NGEK---VEDPYDYESYEKLLKDKIK 178 (186)
T ss_dssp HHHHHHTTCCSSSEEEE----TTEE---CSCTTCHHHHHHHHHC---
T ss_pred HHHHHHcCCCCCCeEEE----CCEE---cCCCCCHHHHHHHHHHHHH
Confidence 45678899999999976 4764 4688889988888877664
No 469
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=31.45 E-value=72 Score=28.72 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=35.0
Q ss_pred HHHHHH-cCCCCCcEEEEEeCCCCcee-----EEEecCCChHHHHHHHHhhhhc
Q 013325 230 KKVCTY-YKLDSIPVVLVVDPITGQKM-----RSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 230 ~~~~~~-y~v~~~P~l~ii~p~tg~~~-----~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
...++. +++...|+++|+++ +|+.+ ..+.|..+.+.|...|...+..
T Consensus 160 ~~~a~~~~GV~GtPtfvv~~~-nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l~~ 212 (226)
T 3f4s_A 160 KSLAINKLGITAVPIFFIKLN-DDKSYIEHNKVKHGGYKELKYFTNVIDKLYGK 212 (226)
T ss_dssp HHHHHHHHCCCSSCEEEEEEC-CTTCCCCGGGGEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCEEEEEcC-CCEEeeCCCCcccccccCHHHHHHHHHHHHhc
Confidence 456677 99999999999763 56643 2455666799999988888764
No 470
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=31.44 E-value=1.7e+02 Score=22.16 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=37.7
Q ss_pred EEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCCh-hHHH----HHHHcCCCCCcEEEEEeCCCCceeEEEec
Q 013325 186 NLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTS-EGKK----VCTYYKLDSIPVVLVVDPITGQKMRSWCG 260 (445)
Q Consensus 186 ~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~-eg~~----~~~~y~v~~~P~l~ii~p~tg~~~~~~~G 260 (445)
.++.++|..|+. . +.+| +-+.-.|-..-++.... +... +...++..++|.|.| + .|+. + |
T Consensus 26 ly~~~~Cp~C~~-a-k~~L------~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~--~~~~---i-g 90 (103)
T 3nzn_A 26 MYGLSTCVWCKK-T-KKLL------TDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-N--DEKA---I-V 90 (103)
T ss_dssp EEECSSCHHHHH-H-HHHH------HHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-T--TTEE---E-E
T ss_pred EEcCCCCchHHH-H-HHHH------HHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-C--CCEE---E-E
Confidence 346678999988 3 2222 22233566654444332 2222 234578899999876 2 1232 3 3
Q ss_pred CCChHHHHHHH
Q 013325 261 MVQPESLLEDL 271 (445)
Q Consensus 261 ~~~~~~~l~~L 271 (445)
..+++.+.+.|
T Consensus 91 g~~~~~l~~~L 101 (103)
T 3nzn_A 91 GFKEKEIRESL 101 (103)
T ss_dssp SCCHHHHHHHT
T ss_pred cCCHHHHHHHh
Confidence 45666655443
No 471
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=30.40 E-value=26 Score=27.64 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.0
Q ss_pred cccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 20 IAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 20 iTt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
-+-..++++|+++| +|||.|.+.|+.
T Consensus 68 AsdeL~e~q~Rqll----fDle~aY~~F~~ 93 (96)
T 2j9u_A 68 IGDTLTETQIRELL----FDLELAYKSFYA 93 (96)
T ss_dssp TTCBCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 33455899999999 899999999985
No 472
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=30.30 E-value=43 Score=29.85 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=67.6
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 245 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ 245 (445)
.+++.+.+...++.+|.++|++- +...+=.++.-.+||.+++=..++--........++.+++...|.++
T Consensus 40 i~~l~~~v~~lk~~~K~v~Vh~D----------li~Gls~d~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~tIqR~F 109 (192)
T 3kts_A 40 VAQLKALVKYAQAGGKKVLLHAD----------LVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLF 109 (192)
T ss_dssp TTTHHHHHHHHHHTTCEEEEEGG----------GEETCCCSHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEecC----------chhccCCcHHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCeEEEEEE
Confidence 36899999999999998888432 23333456677888886433333334456677888999999999999
Q ss_pred EEeCCC---C---------ceeEEEecCCChHHHHHHHHhhhh
Q 013325 246 VVDPIT---G---------QKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 246 ii~p~t---g---------~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+||-.. + ..+..+.|.+ | .++..+.+.++
T Consensus 110 liDS~al~~~~~~i~~~~PD~iEiLPGi~-p-~iI~~i~~~~~ 150 (192)
T 3kts_A 110 MIDSSAYNKGVALIQKVQPDCIELLPGII-P-EQVQKMTQKLH 150 (192)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEEECTTC-H-HHHHHHHHHHC
T ss_pred EEEcchHHHHHHHHhhcCCCEEEECCchh-H-HHHHHHHHhcC
Confidence 998331 1 1356667754 4 57887777654
No 473
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=30.18 E-value=1.1e+02 Score=24.94 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=35.2
Q ss_pred HHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc------cEEEEEeecCC--hhHHH-HHHHcCCCCCc
Q 013325 172 AKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST------NFIFWQVYDDT--SEGKK-VCTYYKLDSIP 242 (445)
Q Consensus 172 A~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~------~FV~~~~~~~s--~eg~~-~~~~y~v~~~P 242 (445)
.++...+..+ +.||.. ++|..|.. ++++|++ .|..+-++.+. .+-.. +...++..++|
T Consensus 6 ~~~~ii~~~~-Vvvysk-~~Cp~C~~-----------ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP 72 (127)
T 3l4n_A 6 EYSLILDLSP-IIIFSK-STCSYSKG-----------MKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVP 72 (127)
T ss_dssp HHHHHHTSCS-EEEEEC-TTCHHHHH-----------HHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHccCC-EEEEEc-CCCccHHH-----------HHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcc
Confidence 3444445554 666655 67998877 4556654 35555444432 12233 33456778999
Q ss_pred EEEE
Q 013325 243 VVLV 246 (445)
Q Consensus 243 ~l~i 246 (445)
.|+|
T Consensus 73 ~IfI 76 (127)
T 3l4n_A 73 NLLV 76 (127)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9964
No 474
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=30.14 E-value=26 Score=27.94 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.7
Q ss_pred ccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 21 AVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 21 Tt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
+-..++++|+++| +|||.|.+.|+.
T Consensus 74 sdeL~e~q~Rqll----fDle~aY~~F~~ 98 (102)
T 2j9w_A 74 SDELDDSQVRQML----FDLESAYNAFNR 98 (102)
T ss_dssp TCBCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 3455899999999 899999999985
No 475
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=29.42 E-value=70 Score=28.09 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
...++.+++...|+++| +|+. +.|..+++.|...|...+...
T Consensus 153 ~~~a~~~gV~gtPtfvv----nG~~---~~G~~~~e~l~~~i~~~~~~~ 194 (202)
T 3gha_A 153 SDLNQKMNIQATPTIYV----NDKV---IKNFADYDEIKETIEKELKGK 194 (202)
T ss_dssp HHHHHHTTCCSSCEEEE----TTEE---CSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcCCEEEE----CCEE---ecCCCCHHHHHHHHHHHHHhh
Confidence 45678899999999987 4664 568889999999888887654
No 476
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=28.29 E-value=2.9e+02 Score=24.62 Aligned_cols=93 Identities=10% Similarity=0.096 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013325 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 246 (445)
Q Consensus 167 gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~i 246 (445)
.+-+++...-.....+++.|+.+..+..+.. | ..+.+-++.++.|+... + ..++..|++.. |.|.+
T Consensus 12 ~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~-f-------~~~A~~lr~~~~F~~~~--~---~~v~~~~~~~~-p~i~~ 77 (252)
T 2h8l_A 12 RTEEEFKKFISDKDASIVGFFDDSFSEAHSE-F-------LKAASNLRDNYRFAHTN--V---ESLVNEYDDNG-EGIIL 77 (252)
T ss_dssp CSHHHHHHHHTSSSCEEEEEESCTTSHHHHH-H-------HHHHHHTTTTSCEEEEC--C---HHHHHHHCSSS-EEEEE
T ss_pred cCHHHHHHHhhcCCeEEEEEECCCCChHHHH-H-------HHHHHhcccCcEEEEEC--h---HHHHHHhCCCC-CcEEE
Confidence 3455554444445556666776543333333 3 34556666777777542 2 34788899986 99998
Q ss_pred EeCCC-----CceeEEE-ecCCChHHHHHHHHh
Q 013325 247 VDPIT-----GQKMRSW-CGMVQPESLLEDLVP 273 (445)
Q Consensus 247 i~p~t-----g~~~~~~-~G~~~~~~~l~~L~~ 273 (445)
.-|.. .+..... .|..+.+++...+..
T Consensus 78 fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~ 110 (252)
T 2h8l_A 78 FRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE 110 (252)
T ss_dssp ECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHH
T ss_pred EcchhhcccccccccccCCCCcCHHHHHHHHHh
Confidence 87621 1222345 687788777666554
No 477
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=27.91 E-value=69 Score=28.36 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHH-HHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 230 KKVC-TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 230 ~~~~-~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
...+ +.++|...|+++| +|+. +.|..+.+.|...|...+..+
T Consensus 157 ~~~a~~~~GV~GtPtfvv----ng~~---~~G~~~~e~l~~~i~~~~~~~ 199 (205)
T 3gmf_A 157 TDEAINQYNVSGTPSFMI----DGIL---LAGTHDWASLRPQILARLNEG 199 (205)
T ss_dssp HHHHHHHHCCCSSSEEEE----TTEE---CTTCCSHHHHHHHHHHHHTC-
T ss_pred HHHHHHHcCCccCCEEEE----CCEE---EeCCCCHHHHHHHHHHHhhcc
Confidence 3455 7899999999986 4663 579999999999998888765
No 478
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=27.84 E-value=76 Score=31.15 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=34.4
Q ss_pred CCCChhhHHHHHHhhhccc-------cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013325 3 SVLSANDKQSMVSSFLEIA-------VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (445)
Q Consensus 3 ~~l~~~~~~~~v~~F~~iT-------t~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (445)
..|++.+++ .|++|.+.. --.|......||.+++||++.|...+-+
T Consensus 6 ~~l~~~q~~-~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 6 GDLSPRQKE-ALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp TBCCHHHHH-HHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 456777744 677774421 2468899999999999999999998754
No 479
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=27.47 E-value=1.7e+02 Score=23.11 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=37.7
Q ss_pred hhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhh
Q 013325 207 EAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 275 (445)
Q Consensus 207 ~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~ 275 (445)
..|.+++...++....+..-.++....... .+.++.|++ ..|+++ |.++..+++..+....
T Consensus 85 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~---~~~~l~Vvd-~~g~~~----Giit~~dil~~~~~~~ 145 (152)
T 4gqw_A 85 KLVGDLMTPAPLVVEEKTNLEDAAKILLET---KYRRLPVVD-SDGKLV----GIITRGNVVRAALQIK 145 (152)
T ss_dssp CBHHHHSEESCCCEESSSBHHHHHHHHHHS---SCCEEEEEC-TTSBEE----EEEEHHHHHHHHHC--
T ss_pred ccHHHhcCCCceEECCCCcHHHHHHHHHHC---CCCEEEEEC-CCCcEE----EEEEHHHHHHHHHhcc
Confidence 467888887776654444445655555555 456777887 346654 5566788887766543
No 480
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=26.45 E-value=14 Score=33.65 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCcC-ceE
Q 013325 365 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 440 (445)
Q Consensus 365 ~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~v 440 (445)
...+.|.| -.+|+.+.-+...+++++.|++..... .+.....+++.- -++. + ..+.|.+++|+.. ++|
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcER-qGLs~~siRFLF--DGqR--I--~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIR--I--QADQTPEDLDMEDNDII 87 (227)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHH-hCCCccceEEEE--CCEe--c--CCCCCHHHcCCCCCCEE
Confidence 35677888 569999999999999999999865443 244444444443 3443 3 4578999999984 444
No 481
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=26.30 E-value=29 Score=27.98 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCCChhhHHHHHHhhhccccCCCHHHHHHHHHHcC
Q 013325 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATS 37 (445)
Q Consensus 3 ~~l~~~~~~~~v~~F~~iTt~~~~~~A~~~L~~~~ 37 (445)
..|.++|.-+++.++..+ ...+++.|+.+|+.|-
T Consensus 47 aslpp~Ql~eiL~qmK~~-~~~nP~~a~~LL~q~P 80 (109)
T 2l9b_A 47 AKKPKEVQLKFLQKFQEW-TRAHPEDAASLLELCP 80 (109)
T ss_dssp HTSCHHHHHHHHHHHHHH-HHHCHHHHHHHHHHCH
T ss_pred hcCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHCc
Confidence 357788888899999999 8899999999999864
No 482
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=25.32 E-value=42 Score=29.15 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=30.6
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHH
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 271 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L 271 (445)
.+.++.++|...|+++| +|+.+..++|..++++|.+.|
T Consensus 144 ~~~a~~~GV~gtPtf~i----ng~~~~~~s~~~~~e~w~~~l 181 (182)
T 3gn3_A 144 TKYARQNGIHVSPTFMI----NGLVQPGMSSGDPVSKWVSDI 181 (182)
T ss_dssp HHHHHHHTCCSSSEEEE----TTEECTTCCTTSCHHHHHHHH
T ss_pred HHHHHHCCCCccCEEEE----CCEEccCCCCCCCHHHHHHHh
Confidence 35678899999999986 577776678888999988765
No 483
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=25.10 E-value=1.1e+02 Score=22.38 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=25.9
Q ss_pred CCcchhhhhhhcccCChhHHHHhhc---cEEEEEeec----CChhH-HHHHHHcCCC-----CCcEEEE
Q 013325 191 KEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYD----DTSEG-KKVCTYYKLD-----SIPVVLV 246 (445)
Q Consensus 191 ~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~----~s~eg-~~~~~~y~v~-----~~P~l~i 246 (445)
+|..|+. ++.+|++ .|...-++. ..++. ..+...++.. ++|.|.|
T Consensus 13 ~Cp~C~~-----------ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i 70 (87)
T 1aba_A 13 KCGPCDN-----------AKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA 70 (87)
T ss_dssp CCHHHHH-----------HHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred cCccHHH-----------HHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE
Confidence 6777766 4555554 365553331 12333 3456667777 8998874
No 484
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=24.09 E-value=42 Score=25.93 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=26.4
Q ss_pred cCcccCcHHHHHHHH--HHcCCeEEEEEeCCCCcchhh
Q 013325 162 HLMFNGSFEKAKDAA--SVQDKWLLVNLQSTKEFSSHM 197 (445)
Q Consensus 162 ~~~~~gs~~eA~~~A--k~~~K~LlV~l~~~~~f~~~~ 197 (445)
.++..-+|++|...| .+++|+++||+..-+.-..+.
T Consensus 8 vv~~P~sy~Da~~I~d~Lr~~~~VvvNL~~ld~~~AqR 45 (87)
T 3p04_A 8 VPVELHSFEDAQVIGGAFRDGDAVVFDMSLLSREEARR 45 (87)
T ss_dssp EEEECSSGGGHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Confidence 344556888888776 589999999999865554444
No 485
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.33 E-value=1.3e+02 Score=31.89 Aligned_cols=48 Identities=15% Similarity=-0.009 Sum_probs=39.6
Q ss_pred ceEEEEECCCCceEEEeeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC
Q 013325 367 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 414 (445)
Q Consensus 367 ~~~I~iRlP~G~r~~rrF~~~d~l~~l~~fv~~~~~~~~~~~f~L~~~ 414 (445)
.+.+.|.||||+...-.+..+.++++|++-|..++.-....-|.|...
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~ 310 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIA 310 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEe
Confidence 367899999999999999999999999999988864334567877653
No 486
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=22.31 E-value=1.7e+02 Score=24.00 Aligned_cols=64 Identities=9% Similarity=0.178 Sum_probs=40.1
Q ss_pred ChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhhc
Q 013325 206 NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 277 (445)
Q Consensus 206 ~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~~ 277 (445)
+..|.++++.+++....+..-.++ ...+.-..+.++.|++ ..|+++ |.++..+++..+......
T Consensus 97 ~~~v~~~m~~~~~~v~~~~~l~~a---~~~m~~~~~~~lpVvd-~~g~~v----Giit~~dil~~~~~~~~~ 160 (180)
T 3sl7_A 97 GKVVGDLMTPSPLVVRDSTNLEDA---ARLLLETKFRRLPVVD-ADGKLI----GILTRGNVVRAALQIKRN 160 (180)
T ss_dssp TCBHHHHSEESCCCEETTSBHHHH---HHHHTTSTTCEEEEEC-TTCBEE----EEEEHHHHHHHHHHHHHT
T ss_pred cccHHHHhCCCceEeCCCCcHHHH---HHHHHHcCCCEEEEEC-CCCeEE----EEEEHHHHHHHHHHHhhh
Confidence 446788888776655333322333 3444445677888888 356654 666778888888776553
No 487
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=21.99 E-value=1.8e+02 Score=22.69 Aligned_cols=101 Identities=10% Similarity=0.109 Sum_probs=53.9
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCCcch----hhh----hhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHc
Q 013325 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSS----HMV----LNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY 236 (445)
Q Consensus 165 ~~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~----~~~----~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y 236 (445)
...+..+|++.-.+.+.--++-+.+...+-. .-+ +....+.+..|.+++..+++....+..-.++.. .+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~---~~ 99 (138)
T 2p9m_A 23 RHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIK---KM 99 (138)
T ss_dssp TTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCSSCCCEETTSBHHHHHH---HH
T ss_pred CCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCCCcEEECCCCCHHHHHH---HH
Confidence 3458899988776554333332322222211 110 111224566788888877766643333334333 33
Q ss_pred CCCC-----CcEEEEEeCCCCceeEEEecCCChHHHHHHHHh
Q 013325 237 KLDS-----IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 273 (445)
Q Consensus 237 ~v~~-----~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~ 273 (445)
.-.. +..+.|++. .|+.+ |.++..+++..+.+
T Consensus 100 ~~~~~~~~~~~~l~Vvd~-~g~~~----Giit~~dll~~~~~ 136 (138)
T 2p9m_A 100 DISGKKEEIINQLPVVDK-NNKLV----GIISDGDIIRTISK 136 (138)
T ss_dssp TCC-----CCCEEEEECT-TSBEE----EEEEHHHHHHHHHH
T ss_pred HhcCCccccccEEEEECC-CCeEE----EEEEHHHHHHHHHh
Confidence 3344 678888884 46654 55667777776543
No 488
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=21.93 E-value=1.7e+02 Score=21.75 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=30.0
Q ss_pred EEEEEeCCCCcchhhhhhhcccCChhHHHHhhc---cEEEEEeecCC-hhHH-HHHHHcC--CCCCcEEEE
Q 013325 183 LLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEGK-KVCTYYK--LDSIPVVLV 246 (445)
Q Consensus 183 LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~---~FV~~~~~~~s-~eg~-~~~~~y~--v~~~P~l~i 246 (445)
+.||. .+.|..|.. . -....++++|++ .|... +++. ++.. .+...++ ..++|.|+|
T Consensus 4 v~ly~-~~~C~~c~~-~----~~~~~ak~~L~~~~i~~~~~--di~~~~~~~~~l~~~~g~~~~~vP~ifi 66 (93)
T 1t1v_A 4 LRVYS-TSVTGSREI-K----SQQSEVTRILDGKRIQYQLV--DISQDNALRDEMRTLAGNPKATPPQIVN 66 (93)
T ss_dssp EEEEE-CSSCSCHHH-H----HHHHHHHHHHHHTTCCCEEE--ETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred EEEEE-cCCCCCchh-h----HHHHHHHHHHHHCCCceEEE--ECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 44554 567888832 1 011234556654 35544 5543 3433 3555677 668998853
No 489
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=21.60 E-value=1e+02 Score=24.78 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=39.1
Q ss_pred CChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 205 ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 205 ~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.+..|.+++..+++....+..-.++.......++ +.|++ ..|+++ |.++..+++..+...+.
T Consensus 85 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~-----l~Vvd-~~g~~~----Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 85 EEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF-----ICAVN-EDGYFE----GILTRRAILKLLNKKVR 146 (150)
T ss_dssp GGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE-----EEEEC-TTCBEE----EEEEHHHHHHHHHHHC-
T ss_pred hcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE-----EEEEC-CCCcEE----EEEEHHHHHHHHHHHhH
Confidence 4455777777777666544444666666655542 77777 346654 66677888888776654
No 490
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=21.57 E-value=2.6e+02 Score=26.46 Aligned_cols=104 Identities=10% Similarity=0.078 Sum_probs=67.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhc-cEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013325 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 244 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~-~FV~~~~~~~s~eg~~~~~~y~v~~~P~l 244 (445)
...|.+.+..-++...-+. +.++-|..++. .-+.++++..+ ..++.-+..+|....++.....-..-|++
T Consensus 169 ~~~~~~iv~~L~~r~p~~~--~~~tIC~AT~~-------RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 169 EEFFKEVVGEIALWVKEVK--VINTICNATSL-------RQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp HHHHHHHHHHHHHHSSEEE--EECCCCSHHHH-------HHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHHHHhCCCCC--CCCCccHHHHH-------HHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 3445555555555554332 45666666554 34678888775 57777778999998877654433334666
Q ss_pred EEEeCC-------CC-ceeEEEecCCChHHHHHHHHhhhhcC
Q 013325 245 LVVDPI-------TG-QKMRSWCGMVQPESLLEDLVPFMDGG 278 (445)
Q Consensus 245 ~ii~p~-------tg-~~~~~~~G~~~~~~~l~~L~~~~~~~ 278 (445)
+|=+.. .| ..++.-.|..+|+.+++.+...|...
T Consensus 240 ~Ie~~~el~~~wl~~~~~VGITAGASTP~~li~eVi~~l~~~ 281 (297)
T 3dnf_A 240 HIETAEELQPEWFRGVKRVGISAGASTPDWIIEQVKSRIQEI 281 (297)
T ss_dssp EESSGGGCCGGGGTTCSEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred EeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHHHHHh
Confidence 552221 12 36788889999999999999988765
No 491
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=21.42 E-value=1.1e+02 Score=25.55 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=26.6
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHH
Q 013325 230 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 272 (445)
Q Consensus 230 ~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~ 272 (445)
...++.+++...|+++| + |+. +.|..+.+.|...|.
T Consensus 139 ~~~a~~~gv~gtPt~vv-n---g~~---~~G~~~~~~l~~~i~ 174 (175)
T 1z6m_A 139 IAEANAAHIQFVPTIII-G---EYI---FDESVTEEELRGYIE 174 (175)
T ss_dssp HHHHHHHTCCSSCEEEE-T---TEE---ECTTCCHHHHHHHHT
T ss_pred HHHHHHcCCCCcCeEEE-C---CEE---ccCCCCHHHHHHHhc
Confidence 45788899999999654 4 653 578888887776553
No 492
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=21.27 E-value=1.9e+02 Score=24.81 Aligned_cols=57 Identities=2% Similarity=-0.220 Sum_probs=29.7
Q ss_pred cCCeEEEEEeC-CCCcchhhhhhhcccCChhHHHHhhccE-EEEEeecCChhHH-HHHHHcCC
Q 013325 179 QDKWLLVNLQS-TKEFSSHMVLNRDTWANEAVSQTISTNF-IFWQVYDDTSEGK-KVCTYYKL 238 (445)
Q Consensus 179 ~~K~LlV~l~~-~~~f~~~~~~~rdv~~~~~V~~~l~~~F-V~~~~~~~s~eg~-~~~~~y~v 238 (445)
.+||++||++- .+++-|..=++ . -++...+|-+.+. .+++++.+++... +++..+++
T Consensus 41 ~gk~vVL~fyP~~fTp~Ct~e~~-~--f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~ 100 (171)
T 2xhf_A 41 RGRKGILFSVVGAFVPGSNNHIP-E--YLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDP 100 (171)
T ss_dssp TTSEEEEEECSCTTCTTTTSSHH-H--HHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCT
T ss_pred CCCeEEEEEECCCCCCcCHHHHH-H--HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 46788887764 44555543011 0 0112233333466 4778888887653 35555554
No 493
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=21.18 E-value=1.8e+02 Score=23.82 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=38.1
Q ss_pred ccCcHHHHHHHHH---HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecC
Q 013325 165 FNGSFEKAKDAAS---VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDD 225 (445)
Q Consensus 165 ~~gs~~eA~~~Ak---~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~ 225 (445)
+.-+|++-+++|+ ..++.+=||+.. +||+++.+...+..|-|+=...-.
T Consensus 53 ~~~~Fd~~~~~A~YyYtTG~~vrvY~~~------------nVWtdp~F~~~fS~NeLv~istCs 104 (126)
T 3dwa_A 53 WGASFSTLYNQALYFYTTGQPVRIYYEP------------GVWTYPPFVKALTSNALVGLSTCT 104 (126)
T ss_dssp SGGGHHHHHHHHHHHHHHCCEEEEEEET------------TCCCCHHHHHHSCSCEEEEEEEBS
T ss_pred ccccHHHHHHHhHhhhhcCCcEEEEEec------------CcccChhHhhhhcccceEEEeccc
Confidence 4467888888887 789999999764 579999999999888666543433
No 494
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=21.03 E-value=70 Score=18.71 Aligned_cols=16 Identities=50% Similarity=0.430 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhHHHh
Q 013325 309 ENEELLQALAASMETI 324 (445)
Q Consensus 309 ede~~~~al~~sl~~~ 324 (445)
|+++++.|++-|+-+.
T Consensus 3 EeEEl~LAlAlS~sEa 18 (26)
T 2d3g_P 3 EEEELQLALALSQSEA 18 (26)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555777777777654
No 495
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=21.02 E-value=3.3e+02 Score=22.04 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=40.9
Q ss_pred cCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 204 WANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 204 ~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
+.+..|.+++..+++....+..-.++.......+ +..+.|++. |+ +.|.++..+++..+...+.
T Consensus 75 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~---~~~lpVvd~--g~----lvGiit~~dil~~~~~~~~ 138 (160)
T 2o16_A 75 AFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHK---IGCLPVVAK--DV----LVGIITDSDFVTIAINLLE 138 (160)
T ss_dssp -CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTT---CSCEEEEET--TE----EEEEECHHHHHHHHHHHHH
T ss_pred hcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhC---CCEEEEEEC--CE----EEEEEEHHHHHHHHHHHhc
Confidence 3455678888777766644444456666655554 445667774 54 4577788889888777665
No 496
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=20.74 E-value=1.4e+02 Score=25.61 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred hHHHHHHHcCCCCCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 228 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 228 eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.....++.+++...|+++| +|+.+.. |. +.+.|+..|...+.
T Consensus 142 ~~~~~a~~~gv~gtPt~vv----ng~~~~~--~~-~~e~l~~~i~~ll~ 183 (193)
T 3hz8_A 142 KMQELTETFQIDGVPTVIV----GGKYKVE--FA-DWESGMNTIDLLAD 183 (193)
T ss_dssp HHHHHHHHTTCCSSSEEEE----TTTEEEC--CS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCEEEE----CCEEEec--CC-CHHHHHHHHHHHHH
No 497
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=20.65 E-value=3.9e+02 Score=23.54 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCCCCCCCCceEEEEECCCCceEEEeeCCCCchHHHHHH-HHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCchhhcCCc
Q 013325 358 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSY-CYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 436 (445)
Q Consensus 358 ~EP~~~~~~~~~I~iRlP~G~r~~rrF~~~d~l~~l~~f-v~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~ 436 (445)
++|.. ...+.|.++- +|+.+.-+...++++..|++- |+.. +.....++|... .+. ...+.|-+++++.
T Consensus 14 ~~~~~--~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~--g~~~~~~~f~fd--G~~----i~~~~Tpk~L~~e 82 (209)
T 3uf8_A 14 PEVKP--ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ--GKEMDSLRFLYD--GIR----IQADQTPEDLDME 82 (209)
T ss_dssp ----C--CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHH--TCCGGGCEEEET--TEE----CCTTCCTTTTTCC
T ss_pred ceeCC--CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhh--CCChheEEEEEC--CEe----ccCCCChHHhhhc
Confidence 45543 4678888987 888889999999999998875 4443 555666655543 221 2456777777776
Q ss_pred C
Q 013325 437 N 437 (445)
Q Consensus 437 ~ 437 (445)
.
T Consensus 83 d 83 (209)
T 3uf8_A 83 D 83 (209)
T ss_dssp T
T ss_pred c
Confidence 4
No 498
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=20.18 E-value=1.3e+02 Score=26.31 Aligned_cols=102 Identities=9% Similarity=0.027 Sum_probs=59.7
Q ss_pred cCcHHHHHHHHHHcC--CeEEEEEeCC-CCcchhhhhhhcccC---ChhHHHHhhccEEEEEeecCChhHHHHHHHcCCC
Q 013325 166 NGSFEKAKDAASVQD--KWLLVNLQST-KEFSSHMVLNRDTWA---NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD 239 (445)
Q Consensus 166 ~gs~~eA~~~Ak~~~--K~LlV~l~~~-~~f~~~~~~~rdv~~---~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~ 239 (445)
..+..+|+..-++.. ..-.+++.+. +.+-.-. -.++++. +..|.++++.++++...+.+-.++......|
T Consensus 70 ~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGiv-t~~dll~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~--- 145 (205)
T 3kxr_A 70 KATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTV-RRYDIFKHEPHEPLISLLSEDSRALTANTTLLDAAEAIEHS--- 145 (205)
T ss_dssp TCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEE-EHHHHTTSCTTSBGGGGCCSSCCCEETTSCHHHHHHHHHTS---
T ss_pred CCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEE-EHHHHHhCCCcchHHHHhcCCCeEECCCCCHHHHHHHHHhc---
Confidence 458888888877630 2223334442 2222211 2344443 3457788887877775555555666666666
Q ss_pred CCcEEEEEeCCCCceeEEEecCCChHHHHHHHHhhhh
Q 013325 240 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 276 (445)
Q Consensus 240 ~~P~l~ii~p~tg~~~~~~~G~~~~~~~l~~L~~~~~ 276 (445)
.+..+.||+ ..|+++ |.++.++++..+..-..
T Consensus 146 ~~~~lpVVD-~~g~lv----GiIT~~Dil~~i~~e~~ 177 (205)
T 3kxr_A 146 REIELPVID-DAGELI----GRVTLRAATALVREHYE 177 (205)
T ss_dssp SCSEEEEEC-TTSBEE----EEEEHHHHHHHHHHHHC
T ss_pred CCCEEEEEc-CCCeEE----EEEEHHHHHHHHHHHHH
Confidence 456677888 356655 55667888887765443
No 499
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=20.04 E-value=2.3e+02 Score=28.92 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=44.5
Q ss_pred HcCCeEEEEEeCCCCcchhhhhhhcccCChhHHHHhhccEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCceeEE
Q 013325 178 VQDKWLLVNLQSTKEFSSHMVLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 257 (445)
Q Consensus 178 ~~~K~LlV~l~~~~~f~~~~~~~rdv~~~~~V~~~l~~~FV~~~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tg~~~~~ 257 (445)
...++++|.+.+.+.. +- ...+.++.....|.+....++ ...+++.|+|+.||+|+++++ +|+. ..
T Consensus 155 ~~~~~vallF~~~~s~-----~~-----~~~~ldl~~~~~v~v~~v~~~--~~~l~~kfgV~~~Pslvl~~~-nGk~-~~ 220 (519)
T 3t58_A 155 NKADYLALVFEREDSY-----LG-----REVTLDLSQYHAVAVRRVLNT--ESDLVNKFGVTDFPSCYLLLR-NGSV-SR 220 (519)
T ss_dssp CCCSEEEEEEECTTCC-----HH-----HHHHHHTTTCTTEEEEEEETT--CHHHHHHHTCCCSSEEEEEET-TSCE-EE
T ss_pred CCCCeEEEEecCCchH-----HH-----HHHHHHhhccCCeeEEEecCc--hHHHHHHcCCCCCCeEEEEeC-CCce-ee
Confidence 5667888888776432 11 122334444434555433333 246788999999999999995 5643 23
Q ss_pred EecCCChHHHHH
Q 013325 258 WCGMVQPESLLE 269 (445)
Q Consensus 258 ~~G~~~~~~~l~ 269 (445)
+....+...++.
T Consensus 221 ~~v~~~~r~~~~ 232 (519)
T 3t58_A 221 VPVLVESRSFYT 232 (519)
T ss_dssp CCCSSCSHHHHH
T ss_pred cccccccHHHHH
Confidence 333333334443
Done!