BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013326
         (445 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
           From S. Oneidensis
 pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
           In Complex With P-Hydroxyacetophenone
 pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
           Complex With P-Hydroxybenzaldehyde
 pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
           Oneidensis
          Length = 365

 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 231 MSAIIVANAAGMIPEMQSTLRQPA-VMNMRKALY--SQYTVGLLFYYGV----TIIGY-W 282
           + A+ + N   M P  +S   QP  V N   A+Y   + + GL+   G     T  GY W
Sbjct: 11  LGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAW 70

Query: 283 AYGSSVSVYLPEQIGGAKWIKVFVNA---AVFLQ 313
             G    +Y PEQI G + +   V+A   A+F Q
Sbjct: 71  TPG----IYTPEQIAGWRIVTEAVHAKGCAIFAQ 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.140    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,520,457
Number of Sequences: 62578
Number of extensions: 432352
Number of successful extensions: 914
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 1
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)