Query 013326
Match_columns 445
No_of_seqs 139 out of 1203
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 6.8E-60 1.5E-64 463.6 34.7 401 28-435 29-437 (437)
2 KOG1304 Amino acid transporter 100.0 1E-57 2.2E-62 440.1 36.5 385 34-432 44-449 (449)
3 PTZ00206 amino acid transporte 100.0 1.1E-57 2.4E-62 460.6 35.3 391 35-433 58-465 (467)
4 PLN03074 auxin influx permease 100.0 8.4E-52 1.8E-56 415.9 35.2 391 34-444 43-463 (473)
5 PF01490 Aa_trans: Transmembra 100.0 2.5E-55 5.5E-60 440.8 -3.2 392 35-429 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 3.5E-45 7.6E-50 358.0 27.0 393 34-436 3-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 9.9E-45 2.1E-49 329.9 6.8 423 4-441 76-523 (524)
8 COG0814 SdaC Amino acid permea 100.0 3.9E-34 8.4E-39 284.0 35.6 390 33-429 5-412 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 3.4E-26 7.5E-31 225.7 37.5 370 36-421 2-391 (394)
10 PRK09664 tryptophan permease T 100.0 1.6E-26 3.4E-31 225.7 34.1 378 35-425 7-404 (415)
11 PRK10483 tryptophan permease; 100.0 2.7E-26 5.9E-31 224.3 34.7 375 33-424 7-402 (414)
12 PRK15132 tyrosine transporter 99.9 1.3E-24 2.8E-29 213.6 34.4 370 37-425 3-392 (403)
13 TIGR00837 araaP aromatic amino 99.9 1.1E-24 2.4E-29 216.5 29.5 342 43-400 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 2.1E-19 4.6E-24 175.8 37.0 381 35-423 19-437 (443)
15 TIGR00814 stp serine transport 99.8 2.5E-18 5.4E-23 169.6 31.1 350 42-398 8-377 (397)
16 PRK10655 potE putrescine trans 99.6 5.7E-12 1.2E-16 127.7 39.5 240 33-283 4-247 (438)
17 PRK10644 arginine:agmatin anti 99.6 1.7E-11 3.6E-16 124.5 39.8 243 32-285 5-251 (445)
18 TIGR00906 2A0303 cationic amin 99.6 5.4E-12 1.2E-16 130.9 34.5 358 30-399 23-410 (557)
19 PRK10435 cadB lysine/cadaverin 99.6 2E-11 4.4E-16 123.5 37.6 242 33-285 3-247 (435)
20 TIGR00905 2A0302 transporter, 99.6 3E-11 6.4E-16 123.6 39.2 246 34-285 6-258 (473)
21 TIGR00909 2A0306 amino acid tr 99.6 6.5E-12 1.4E-16 127.0 31.3 239 34-283 2-253 (429)
22 TIGR03810 arg_ornith_anti argi 99.6 5.3E-11 1.1E-15 121.6 37.8 358 35-400 1-380 (468)
23 PRK11387 S-methylmethionine tr 99.5 1.3E-10 2.7E-15 118.9 38.1 244 32-285 11-266 (471)
24 TIGR01773 GABAperm gamma-amino 99.5 1.1E-10 2.4E-15 118.7 36.7 242 32-285 9-261 (452)
25 PRK11049 D-alanine/D-serine/gl 99.5 1.7E-10 3.7E-15 117.8 37.5 240 31-281 16-267 (469)
26 PRK10249 phenylalanine transpo 99.5 2.7E-10 5.8E-15 116.0 38.7 242 32-284 18-268 (458)
27 PRK11021 putative transporter; 99.5 4.7E-10 1E-14 112.7 39.8 228 38-279 2-231 (410)
28 PRK15049 L-asparagine permease 99.5 2.2E-10 4.9E-15 117.6 37.6 355 32-399 25-405 (499)
29 TIGR00912 2A0309 spore germina 99.5 4.8E-11 1E-15 117.7 30.3 335 35-399 1-353 (359)
30 PRK11357 frlA putative fructos 99.5 9.8E-11 2.1E-15 118.9 32.2 239 32-281 5-251 (445)
31 PRK10746 putative transport pr 99.5 1.3E-09 2.9E-14 110.9 40.2 358 31-400 6-388 (461)
32 TIGR00930 2a30 K-Cl cotranspor 99.5 1.4E-10 3.1E-15 126.0 34.9 244 33-280 74-335 (953)
33 TIGR00908 2A0305 ethanolamine 99.5 2.2E-10 4.8E-15 116.2 34.0 238 32-279 4-245 (442)
34 PRK10836 lysine transporter; P 99.5 4.3E-10 9.4E-15 115.5 36.3 248 26-284 6-264 (489)
35 PRK10238 aromatic amino acid t 99.5 8.9E-10 1.9E-14 112.1 36.9 234 32-276 9-251 (456)
36 PRK10580 proY putative proline 99.5 2.1E-09 4.6E-14 109.5 39.7 239 31-280 5-254 (457)
37 TIGR00913 2A0310 amino acid pe 99.4 1.2E-09 2.7E-14 111.9 36.4 238 34-279 1-251 (478)
38 PF13520 AA_permease_2: Amino 99.4 1.4E-09 3.1E-14 109.8 33.7 348 37-400 1-375 (426)
39 TIGR00911 2A0308 L-type amino 99.4 1E-09 2.2E-14 113.1 32.9 247 31-285 38-295 (501)
40 KOG1287 Amino acid transporter 99.3 4.6E-10 1E-14 110.7 25.0 357 30-404 7-390 (479)
41 PRK10197 gamma-aminobutyrate t 99.3 1.5E-08 3.2E-13 102.9 34.7 340 46-399 3-367 (446)
42 COG0531 PotE Amino acid transp 99.3 3.6E-08 7.9E-13 100.7 35.2 252 30-286 7-262 (466)
43 TIGR03428 ureacarb_perm permea 99.2 3.5E-07 7.6E-12 93.7 39.4 252 31-286 9-274 (475)
44 COG1113 AnsP Gamma-aminobutyra 99.2 6.2E-08 1.3E-12 94.5 28.5 359 29-399 7-388 (462)
45 PF03845 Spore_permease: Spore 99.1 1.1E-07 2.4E-12 92.2 28.7 280 36-336 1-295 (320)
46 TIGR00907 2A0304 amino acid pe 99.1 1.8E-06 3.8E-11 88.8 36.9 249 32-285 9-277 (482)
47 PRK15238 inner membrane transp 98.9 2.6E-05 5.7E-10 80.4 38.4 241 34-280 6-266 (496)
48 TIGR00910 2A0307_GadC glutamat 98.9 1.5E-05 3.2E-10 82.3 35.4 232 34-278 3-247 (507)
49 KOG1286 Amino acid transporter 98.9 9.5E-08 2.1E-12 97.9 18.3 365 31-399 26-422 (554)
50 COG0833 LysP Amino acid transp 98.9 1.4E-05 3E-10 80.0 32.6 359 33-399 42-427 (541)
51 TIGR03813 put_Glu_GABA_T putat 98.9 3.9E-05 8.5E-10 78.6 36.6 52 233-285 202-254 (474)
52 KOG3832 Predicted amino acid t 98.8 9.2E-08 2E-12 82.6 12.6 207 41-254 16-303 (319)
53 TIGR00800 ncs1 NCS1 nucleoside 98.8 3.3E-05 7.2E-10 78.3 33.5 186 100-288 75-274 (442)
54 PF00324 AA_permease: Amino ac 98.6 6.3E-07 1.4E-11 91.9 14.6 235 46-286 6-261 (478)
55 PRK11375 allantoin permease; P 98.6 0.00065 1.4E-08 69.5 35.9 185 100-288 88-294 (484)
56 COG1457 CodB Purine-cytosine p 98.5 0.00094 2E-08 66.4 31.6 272 102-399 82-360 (442)
57 COG3949 Uncharacterized membra 98.4 0.00041 9E-09 65.2 25.9 130 42-184 8-142 (349)
58 PRK12488 acetate permease; Pro 98.4 0.0052 1.1E-07 64.1 40.1 151 33-195 65-218 (549)
59 KOG1289 Amino acid transporter 98.3 0.0023 5.1E-08 64.3 30.4 135 152-288 170-315 (550)
60 TIGR02358 thia_cytX probable h 98.3 0.004 8.7E-08 62.0 32.5 175 100-286 57-233 (386)
61 PRK11017 codB cytosine permeas 98.3 0.006 1.3E-07 61.1 32.5 173 100-286 70-244 (404)
62 PF00474 SSF: Sodium:solute sy 98.1 0.0016 3.5E-08 65.3 25.2 150 34-194 5-157 (406)
63 PRK09442 panF sodium/panthothe 98.1 0.017 3.8E-07 59.3 41.1 155 31-195 37-196 (483)
64 TIGR02711 symport_actP cation/ 98.1 0.023 4.9E-07 59.4 41.5 149 33-193 65-216 (549)
65 TIGR02119 panF sodium/pantothe 98.0 0.027 5.9E-07 57.7 39.5 156 31-197 36-197 (471)
66 PF02133 Transp_cyt_pur: Perme 98.0 0.00033 7.2E-09 71.1 17.0 177 100-283 70-259 (440)
67 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.027 5.9E-07 56.0 33.2 309 101-428 77-411 (416)
68 TIGR00813 sss transporter, SSS 97.9 0.036 7.8E-07 55.7 34.0 150 34-194 2-153 (407)
69 COG0591 PutP Na+/proline sympo 97.8 0.07 1.5E-06 54.9 38.1 150 33-192 36-190 (493)
70 PRK00701 manganese transport p 97.7 0.065 1.4E-06 54.1 36.1 47 100-146 93-139 (439)
71 PRK09395 actP acetate permease 97.7 0.11 2.3E-06 54.4 40.1 150 33-193 67-218 (551)
72 PF02554 CstA: Carbon starvati 97.5 0.025 5.4E-07 54.6 20.9 107 36-144 51-157 (376)
73 COG1953 FUI1 Cytosine/uracil/t 97.4 0.2 4.3E-06 50.4 32.3 194 99-299 101-320 (497)
74 PRK10484 putative transporter; 97.1 0.42 9.1E-06 49.7 37.8 159 31-194 34-198 (523)
75 PF01566 Nramp: Natural resist 97.1 0.35 7.6E-06 47.6 26.5 83 101-190 42-126 (358)
76 TIGR00796 livcs branched-chain 97.0 0.42 9.1E-06 47.2 32.1 73 44-124 2-77 (378)
77 KOG1288 Amino acid transporter 97.0 0.053 1.1E-06 55.9 17.4 54 226-280 295-349 (945)
78 TIGR03648 Na_symport_lg probab 97.0 0.61 1.3E-05 48.8 39.8 151 32-193 29-181 (552)
79 PRK15419 proline:sodium sympor 97.0 0.59 1.3E-05 48.4 37.3 154 31-194 36-197 (502)
80 TIGR02121 Na_Pro_sym sodium/pr 97.0 0.58 1.3E-05 48.2 38.9 152 33-193 34-192 (487)
81 PF05525 Branch_AA_trans: Bran 96.2 1.6 3.5E-05 43.7 24.6 74 37-118 3-79 (427)
82 PRK15015 carbon starvation pro 96.2 0.16 3.4E-06 52.7 14.7 101 40-142 86-186 (701)
83 KOG2083 Na+/K+ symporter [Inor 96.0 0.04 8.7E-07 56.0 9.7 212 55-276 50-274 (643)
84 TIGR00835 agcS amino acid carr 96.0 1.9 4.1E-05 43.2 29.2 85 35-122 45-138 (425)
85 TIGR00796 livcs branched-chain 95.2 0.54 1.2E-05 46.5 14.0 78 100-184 254-331 (378)
86 COG1966 CstA Carbon starvation 95.1 0.21 4.4E-06 50.6 10.8 106 37-144 52-157 (575)
87 COG0733 Na+-dependent transpor 94.3 6.4 0.00014 39.3 30.1 224 36-271 8-260 (439)
88 PF05525 Branch_AA_trans: Bran 94.3 0.87 1.9E-05 45.6 12.9 77 101-184 261-337 (427)
89 COG4147 DhlC Predicted symport 94.1 7.1 0.00015 39.3 32.0 176 100-283 103-294 (529)
90 KOG2082 K+/Cl- cotransporter K 93.9 10 0.00022 40.2 23.2 158 38-198 116-290 (1075)
91 PRK15433 branched-chain amino 93.8 8.3 0.00018 38.8 26.3 73 37-118 8-84 (439)
92 PF00209 SNF: Sodium:neurotran 93.6 10 0.00023 39.4 28.3 88 173-263 195-287 (523)
93 KOG2466 Uridine permease/thiam 93.0 7.4 0.00016 39.2 16.4 248 31-288 50-321 (572)
94 COG1114 BrnQ Branched-chain am 92.4 4.9 0.00011 39.7 14.2 79 101-186 263-341 (431)
95 TIGR01197 nramp NRAMP (natural 91.8 15 0.00032 36.6 31.0 97 44-146 11-109 (390)
96 PF01235 Na_Ala_symp: Sodium:a 91.1 18 0.00039 36.2 22.8 65 30-95 12-79 (416)
97 PRK15433 branched-chain amino 89.5 6.8 0.00015 39.4 12.7 63 103-171 267-329 (439)
98 KOG2349 Na+:iodide/myo-inosito 74.7 30 0.00065 36.1 10.6 238 34-285 44-302 (585)
99 TIGR00909 2A0306 amino acid tr 68.6 1.3E+02 0.0029 30.0 15.6 48 101-148 264-311 (429)
100 COG0814 SdaC Amino acid permea 67.1 62 0.0013 32.6 10.9 153 248-401 213-377 (415)
101 TIGR00906 2A0303 cationic amin 64.5 1.9E+02 0.0041 30.4 19.0 89 103-192 301-398 (557)
102 COG1115 AlsT Na+/alanine sympo 63.7 1.7E+02 0.0037 29.6 22.7 216 32-258 58-300 (452)
103 COG1114 BrnQ Branched-chain am 60.2 1.9E+02 0.0041 29.0 25.8 77 37-121 5-84 (431)
104 TIGR00945 tatC Twin arginine t 60.0 1.3E+02 0.0029 27.1 13.8 40 297-336 52-91 (215)
105 KOG1291 Mn2+ and Fe2+ transpor 53.2 2.6E+02 0.0057 28.4 24.4 47 101-147 89-135 (503)
106 KOG1287 Amino acid transporter 52.5 2.6E+02 0.0056 28.7 12.2 43 104-147 276-318 (479)
107 PRK11281 hypothetical protein; 49.9 3.7E+02 0.0081 30.9 14.1 35 252-286 536-570 (1113)
108 TIGR03750 conj_TIGR03750 conju 47.3 1.5E+02 0.0032 23.8 8.8 69 24-93 5-74 (111)
109 PRK13183 psbN photosystem II r 47.1 20 0.00043 23.4 2.2 31 258-288 4-34 (46)
110 PHA02680 ORF090 IMV phosphoryl 46.2 1E+02 0.0022 23.3 6.1 59 229-289 15-74 (91)
111 PF05805 L6_membrane: L6 membr 46.0 61 0.0013 28.7 5.9 63 372-434 45-117 (195)
112 PF02468 PsbN: Photosystem II 43.1 20 0.00044 23.1 1.8 28 261-288 4-31 (43)
113 CHL00020 psbN photosystem II p 41.8 17 0.00038 23.4 1.4 28 261-288 4-31 (43)
114 cd08765 Cyt_b561_CYBRD1 Verteb 40.9 1.8E+02 0.004 24.7 7.9 68 256-325 44-111 (153)
115 PF11990 DUF3487: Protein of u 40.2 2E+02 0.0044 23.3 8.2 66 25-92 9-76 (121)
116 PRK04949 putative sulfate tran 39.1 3.2E+02 0.007 25.3 13.7 46 248-297 19-64 (251)
117 PF13520 AA_permease_2: Amino 38.5 4.1E+02 0.0088 26.4 13.0 46 103-148 260-305 (426)
118 KOG1619 Cytochrome b [Energy p 33.6 3.8E+02 0.0083 24.6 12.1 92 231-325 61-152 (245)
119 KOG1289 Amino acid transporter 31.8 6.1E+02 0.013 26.4 14.4 48 101-148 325-372 (550)
120 COG3817 Predicted membrane pro 30.7 2.9E+02 0.0063 25.6 7.8 33 405-437 166-198 (313)
121 KOG4812 Golgi-associated prote 30.5 92 0.002 28.4 4.6 79 355-437 161-255 (262)
122 PLN02351 cytochromes b561 fami 30.3 4.4E+02 0.0095 24.3 12.6 74 246-325 72-146 (242)
123 PF03169 OPT: OPT oligopeptide 30.3 4.5E+02 0.0098 28.0 10.7 69 39-113 357-427 (624)
124 cd08764 Cyt_b561_CG1275_like N 29.4 4.3E+02 0.0093 23.9 10.0 78 247-325 46-123 (214)
125 cd08766 Cyt_b561_ACYB-1_like P 27.4 3.3E+02 0.0072 22.8 7.3 67 257-325 38-104 (144)
126 TIGR03810 arg_ornith_anti argi 26.8 6.8E+02 0.015 25.4 15.1 46 103-148 266-311 (468)
127 cd08763 Cyt_b561_CYB561 Verteb 26.2 3.9E+02 0.0085 22.4 8.6 66 257-325 38-104 (143)
128 cd08763 Cyt_b561_CYB561 Verteb 24.9 1.6E+02 0.0035 24.7 4.9 28 403-430 37-64 (143)
129 COG4709 Predicted membrane pro 24.9 4.3E+02 0.0093 23.3 7.5 33 38-78 77-109 (195)
130 PHA03048 IMV membrane protein; 24.7 2.4E+02 0.0051 21.5 5.1 55 229-288 15-71 (93)
131 COG4478 Predicted membrane pro 22.8 3.5E+02 0.0076 23.9 6.5 68 370-437 84-153 (210)
132 PRK11357 frlA putative fructos 22.7 7.9E+02 0.017 24.6 17.4 46 102-147 265-312 (445)
133 PF11188 DUF2975: Protein of u 22.6 1.7E+02 0.0038 23.6 4.8 15 430-444 44-58 (136)
134 COG1292 BetT Choline-glycine b 22.5 8.7E+02 0.019 25.3 10.4 78 127-206 411-494 (537)
135 PF15103 G0-G1_switch_2: G0/G1 22.1 1.7E+02 0.0036 22.9 4.0 39 388-426 7-46 (102)
136 PLN02810 carbon-monoxide oxyge 21.0 6.5E+02 0.014 23.0 12.4 76 246-325 68-143 (231)
137 PRK10921 twin-arginine protein 20.5 7E+02 0.015 23.2 13.3 40 297-336 63-102 (258)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-60 Score=463.59 Aligned_cols=401 Identities=26% Similarity=0.476 Sum_probs=357.4
Q ss_pred CCcccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----CcccccH
Q 013326 28 ATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFID----GKRFIRY 103 (445)
Q Consensus 28 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~----~~~~~sy 103 (445)
.++..++|++||+++.++.++.++|+|+|+ |||+++|.||..|++++++.++++.||..++.+|++.. ++|+++|
T Consensus 29 ~~~~~~~~~~s~~~a~~~~i~~~~G~gvLs-LP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y 107 (437)
T KOG1303|consen 29 WDPITPSRGGSWWQAAFHIINALIGAGVLS-LPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRY 107 (437)
T ss_pred CCccccCCCCcceehhhheehhhhhhhhhh-hHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCh
Confidence 345556888999999999999999999999 99999999999999999999999999999999998765 5667889
Q ss_pred HhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC-CcchhHHHHHHHHHHHHhhhhCCCcchhh
Q 013326 104 RDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSS-DS-PVRLQIYILISGLAFFIFANLVPTMSAIR 181 (445)
Q Consensus 104 ~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~-~~-~~~~~~~~~i~~~~~~pl~~~~~~l~~l~ 181 (445)
+|+++++||+++++++...+.+.++++|+.|.+..+|++..+.+... +. ..+.+.|+++++++++|++ ++||++.++
T Consensus 108 ~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s-~lp~~~~l~ 186 (437)
T KOG1303|consen 108 PDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLS-QLPNFHSLS 186 (437)
T ss_pred HHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHH-HCCCcchhH
Confidence 99999999999999999999999999999999999999999998772 22 4446889999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHH
Q 013326 182 RWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRK 260 (445)
Q Consensus 182 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~ 260 (445)
++|..+.+..+.+..+.+..+..++.+...++.......... ..++++|++.|+| +|.++||||++||+|++ |+|
T Consensus 187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~--~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~ 262 (437)
T KOG1303|consen 187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIP--TVFTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKK 262 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCc--chhhhhhheeeeecCCeeeeehHhhcCCchh--hhh
Confidence 999999999998888888888888855422222221111111 1178999999999 99999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccccccc
Q 013326 261 ALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESM 340 (445)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~ 340 (445)
++..++.+++++|+.+++.||++|||+++|+++.|++++.|+...+++++.+|++.+|+++.+|+.+.+|+....+. ++
T Consensus 263 ~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~-~~ 341 (437)
T KOG1303|consen 263 ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKH-PD 341 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCC-cc
Confidence 99999999999999999999999999999999999975679999999999999999999999999999999988644 22
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHHH
Q 013326 341 FSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFN-ILFFTL 419 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~~-i~~g~~ 419 (445)
+.++....|.+.|+..++.+.++|+.+|+|+++++++||+...++++++|+++|++.+|.++...+++.+|.+ .++|++
T Consensus 342 ~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~ 421 (437)
T KOG1303|consen 342 FKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLL 421 (437)
T ss_pred ccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 3233556899999999999999999999999999999999999999999999999999988889999999999 799999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013326 420 VTIATTVAAVRIVVKH 435 (445)
Q Consensus 420 ~~~~gt~~si~~i~~~ 435 (445)
+++.....++++++.+
T Consensus 422 ~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 422 LSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999988753
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-57 Score=440.14 Aligned_cols=385 Identities=18% Similarity=0.203 Sum_probs=341.7
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc----CcccccHHhHHHH
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFID----GKRFIRYRDLMGY 109 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~----~~~~~sy~~l~~~ 109 (445)
++..|..++..|++|.++|+|+|+ +|+||+++||+.|.+..++++.++.|+.+.+++|.... +....+|.|.++.
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~-lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILS-LPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCCchHHHHHHHHHhhhcccccc-ChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 445789999999999999999999 99999999999999999999999999999999975432 2223577777665
Q ss_pred h----------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcch
Q 013326 110 L----------YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSA 179 (445)
Q Consensus 110 ~----------~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~ 179 (445)
+ +||++|.+++.++.++++|.|++|+++++++++++.+.......+.+.|+.+..+..++++ ++|+++.
T Consensus 123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~-~Ir~Lk~ 201 (449)
T KOG1304|consen 123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLN-LIRNLKI 201 (449)
T ss_pred HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHH-HHHhhHH
Confidence 4 4889999999999999999999999999999999998544567788999999999999999 9999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccch
Q 013326 180 IRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNM 258 (445)
Q Consensus 180 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~ 258 (445)
|+.+|+++.+..++.+++++++.+.+.++.+ +.+. ..++.+.+..+|+.+||| |+.++.|++++||+|++ |
T Consensus 202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~--~~~~----~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~--F 273 (449)
T KOG1304|consen 202 LSPFSLFANVFILVGLAIIMYYLVQDLPPTS--DLPA----VTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK--F 273 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCcc--cccc----ccchhhhHHHHHHHHHHhccceEEEehhhcccChhh--c
Confidence 9999999999999888888888877765322 2222 112345677789999999 99999999999999998 8
Q ss_pred H---HHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcc
Q 013326 259 R---KALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLV 335 (445)
Q Consensus 259 ~---~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~ 335 (445)
+ +++..++.+++++|+.+|++||++|||++++.|++|+|+ +++...+++++.+.+..+||++++|..+.+|+++.+
T Consensus 274 ~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~ 352 (449)
T KOG1304|consen 274 PGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK 352 (449)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence 8 999999999999999999999999999999999999998 899999999999999999999999999999998776
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc---cchHHHHHHHH
Q 013326 336 LEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKA---STIQKKAWHWF 412 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~---~~~~~~~~~~~ 412 (445)
|- + +.++++..+..|..+++++..+|..+||++.+++++||++++.+.+++|++++++.++.+ +++|+++.+.+
T Consensus 353 k~-~--~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~ 429 (449)
T KOG1304|consen 353 KF-S--ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIV 429 (449)
T ss_pred hc-C--cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHH
Confidence 42 1 123567888999999999999999999999999999999999999999999999998743 56899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013326 413 NILFFTLVTIATTVAAVRIV 432 (445)
Q Consensus 413 ~i~~g~~~~~~gt~~si~~i 432 (445)
++++|++.++.|||.++.++
T Consensus 430 l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 430 LIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999864
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-57 Score=460.64 Aligned_cols=391 Identities=12% Similarity=0.073 Sum_probs=321.5
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccc
Q 013326 35 GHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGRE 114 (445)
Q Consensus 35 ~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~ 114 (445)
++++..++.+|++|+++|+|+|+ +|++|+++||++|++++++++.++.|+.+++.++.+.. +.++|+|++++++||+
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILs-LP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~--~~~sY~~la~~~~G~~ 134 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVG-LPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT--NIRTYEGVARVLLGPW 134 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCCHHHHHHHHhCHH
Confidence 35677899999999999999999 99999999999999999999999999999999987653 3579999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------cchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHH
Q 013326 115 MYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSP------VRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSF 188 (445)
Q Consensus 115 g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~------~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~ 188 (445)
+++++++++.+.++|+|++|+++.+|.++.+++.....+ .++..+.++..++++|++ ++|++++++++|.+++
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs-~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLV-IPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcc-cccchHHHHHHHHHHH
Confidence 999999999999999999999999999999886431111 112234445567899999 9999999999999998
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC--CccccccC-C---ccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHH
Q 013326 189 IITFTYVLILLVILVRDGTSNK--SRDYEIQG-S---KTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKA 261 (445)
Q Consensus 189 ~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~-~---~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~ 261 (445)
.+.+..++.+++....++.+.. +.+....+ . .+....+.+.++|+++||| ||.++|++++|||+|+++++.++
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v 293 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLA 293 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHH
Confidence 7766555444444554432211 11100000 0 0111135788999999999 99999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCCcccccccccc-CCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccccccc
Q 013326 262 LYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQI-GGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESM 340 (445)
Q Consensus 262 ~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~ 340 (445)
...++.++.++|..+|++||++||+++++++++|+ |.+++...+++++..+.++.+||++.+|+++.+++.+.+++ ++
T Consensus 294 ~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~-~~ 372 (467)
T PTZ00206 294 STIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA-RK 372 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc-cc
Confidence 99999999999999999999999999999999999 45677888899999999999999999999999988875432 11
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHH
Q 013326 341 FSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKA---KAKASTIQKKAWHWFNILFF 417 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~---~~~~~~~~~~~~~~~~i~~g 417 (445)
.+.++|...+..+++.+.++|+.+||++.+++++||++++.++|++|+++|++. .+++...++++.++.++++|
T Consensus 373 ---~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~G 449 (467)
T PTZ00206 373 ---VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITG 449 (467)
T ss_pred ---CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHH
Confidence 234566666667777889999999999999999999999999999999999984 22333445567899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013326 418 TLVTIATTVAAVRIVV 433 (445)
Q Consensus 418 ~~~~~~gt~~si~~i~ 433 (445)
++.++.|||+++.+.+
T Consensus 450 v~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 450 VIAIVFGTGATIWGVT 465 (467)
T ss_pred hheEEecchhHhhHHh
Confidence 9999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=8.4e-52 Score=415.88 Aligned_cols=391 Identities=15% Similarity=0.211 Sum_probs=323.0
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhh-c---Cccc-------cc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFI-D---GKRF-------IR 102 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-~---~~~~-------~s 102 (445)
.++.+.+++.+++++..+|.|+|+ ||++|+++||++|++.+++.++++.||.+++.+++.. . +++. .+
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILa-LP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLT-LPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHh-HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 346788999999999999999999 9999999999999999999999999999999986422 1 1111 26
Q ss_pred HHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhH
Q 013326 103 YRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRR 182 (445)
Q Consensus 103 y~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~ 182 (445)
|.|+++..+||+++.+..+...+.+++.|+.|.+..++.+..+. ...+.+.|+++++++++|++ ++|+++++++
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-----~~~~~~~~~~i~~~v~~~~~-~i~sl~~l~~ 195 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DNLDKRTWTYIFGACCATTV-FIPSFHNYRI 195 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-----CCcCCCeEEeehHHHHHHHH-HccCHHHHHH
Confidence 89999999999999999999999999999999999888777663 34566778888999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHH
Q 013326 183 WLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKA 261 (445)
Q Consensus 183 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~ 261 (445)
+|.+++..++...+.++...+.++... ..+. ....++..++.++++++||| ||.++|++++|||+|++ |+++
T Consensus 196 ~S~ig~~~tl~~av~i~i~~i~~~~~~-~~~~----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~--F~~~ 268 (473)
T PLN03074 196 WSFLGLLMTTYTAWYMTIAALSHGQVE-GVKH----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKYI 268 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCC----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhc--ccch
Confidence 999998876543333333344343221 1111 12234556778888999999 99999999999999998 8999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCCcccc--ccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccccc
Q 013326 262 LYSQYTVGLLFYYGVTIIGYWAYGSSVSV--YLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEES 339 (445)
Q Consensus 262 ~~~s~~~~~~~y~~~g~~gy~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~ 339 (445)
...+....+.+|+.+|+.||++|||++++ +.+.|+|++. ...+++++..++++.+|+++..|+.+..|+....++
T Consensus 269 ~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~-- 345 (473)
T PLN03074 269 YLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHD-- 345 (473)
T ss_pred HHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccc--
Confidence 89999999999999999999999998764 5677788544 468899999999999999999999999888765421
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc-------------cchH-
Q 013326 340 MFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKA-------------STIQ- 405 (445)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~-------------~~~~- 405 (445)
++....|...|+.+++.+.++|+.+|+|+++++++||++++.++|++|+++|++.++++ .++|
T Consensus 346 ---~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 422 (473)
T PLN03074 346 ---TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWT 422 (473)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccc
Confidence 13457789999999999999999999999999999999999999999999999865432 2233
Q ss_pred -HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccccccc
Q 013326 406 -KKAWHWFNILFFTLV-TIATTVAAVRIVVKHIQDYSFFAD 444 (445)
Q Consensus 406 -~~~~~~~~i~~g~~~-~~~gt~~si~~i~~~~~~~~~f~~ 444 (445)
+.+.++.+++++.++ .+.|+|+|+++++++++.++.|++
T Consensus 423 ~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~ 463 (473)
T PLN03074 423 GMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAK 463 (473)
T ss_pred eehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhh
Confidence 358899999865555 589999999999999999988876
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.5e-55 Score=440.83 Aligned_cols=392 Identities=18% Similarity=0.313 Sum_probs=334.1
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc--CcccccHHhHHHHhcc
Q 013326 35 GHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFID--GKRFIRYRDLMGYLYG 112 (445)
Q Consensus 35 ~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~--~~~~~sy~~l~~~~~G 112 (445)
||+|++++++|++|+++|+|+|+ +|++|+++||++|++++++++.++.||.+++.++.+.. +++..+|+|++++.+|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~-lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILS-LPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHH-HHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 58899999999999999999999 99999999999999999999999999999999987753 3567899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSD-SPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
|++++++++++.+.++|.+++|++..+|.++++.+...+ ...++..|.++..++++|++ ++|+++.+++.|.++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls-~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLS-FLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeeccccccccccccccccccccccccccccc-ccchhhHHHHHhhhhhhcc
Confidence 999999999999999999999999999999999976522 35567778888889999999 9999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccccc-CCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccc-cchHHHHHHHHHH
Q 013326 192 FTYVLILLVILVRDGTSNKSRDYEIQ-GSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAV-MNMRKALYSQYTV 268 (445)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~-~~~~~~~~~s~~~ 268 (445)
+..+++.++......... +.+.+.. ..+..++.+++.++|+++||| ||.++|++++|||+|++ +|++++...++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~ 237 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGE-PSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMII 237 (409)
T ss_pred ceeeeeecceeeeeeccc-ccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhh
Confidence 643222222222222211 1111111 123344578899999999999 99999999999999998 5677999999999
Q ss_pred HHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccc-----ccccccc
Q 013326 269 GLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVL-----EESMFSR 343 (445)
Q Consensus 269 ~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~-----~~~~~~~ 343 (445)
++++|+.+|..||++||+++++|+++|++++++...++++++.++++.+||++.+|.++.+++.+.++ +..+..+
T Consensus 238 ~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 317 (409)
T PF01490_consen 238 CFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTP 317 (409)
T ss_pred hhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccccccccccc
Confidence 99999999999999999999999999999888899999999999999999999999999999988642 1011112
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccccchHHH-----HHHHHHHHHHH
Q 013326 344 ENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKK-----AWHWFNILFFT 418 (445)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~~~~~~-----~~~~~~i~~g~ 418 (445)
.+++.|+..|+.+++.++++|..+||++++++++|++++..++|++|+++|+|.++++++++++ ..++.++++|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 397 (409)
T PF01490_consen 318 SSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGV 397 (409)
T ss_pred ccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEee
Confidence 3457788999999999999999999999999999999999999999999999998876543333 34788999999
Q ss_pred HHHHHHHHHHH
Q 013326 419 LVTIATTVAAV 429 (445)
Q Consensus 419 ~~~~~gt~~si 429 (445)
+.++.|+|+++
T Consensus 398 ~~~~~~~~~~i 408 (409)
T PF01490_consen 398 VLMVFGTYQSI 408 (409)
T ss_pred ehhHHhHHHHc
Confidence 99999999886
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-45 Score=357.98 Aligned_cols=393 Identities=16% Similarity=0.227 Sum_probs=328.0
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR 113 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~ 113 (445)
+++.|.+.+++|+.|+++|+|+++ +|++|++.|+++|++++.++++++.++.+++.++.+..+++ +|+++++..+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~-~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILA-MPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHH-hHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCC
Confidence 467789999999999999999999 99999999999999999999999999999999998876553 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------cchhH-HHHHHHHHHHHhhhhCCCcchhhHHHHH
Q 013326 114 EMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSP------VRLQI-YILISGLAFFIFANLVPTMSAIRRWLAV 186 (445)
Q Consensus 114 ~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~------~~~~~-~~~i~~~~~~pl~~~~~~l~~l~~~s~~ 186 (445)
.++....+.......| |++|++.++|.++.+.......+ .+++. |.+....++.|++ +.|+++++++.|.+
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLs-l~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLS-LLKNLDSLKYTSAL 157 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHH-HHHhhhhHHHHHHH
Confidence 9977777766666666 79999999999997765542111 12333 5667788999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHH
Q 013326 187 SFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQ 265 (445)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s 265 (445)
+.+.++..+++.++..+......+...+.. ++...+++.+.++++++||| ||.+..++++|||||+++++.++...+
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~ 235 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYLV--PNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIA 235 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccccc--CCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHH
Confidence 999887666555555554332111111111 11122257888899999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhcCCccccccccccCCccHH------HHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccccc
Q 013326 266 YTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWI------KVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEES 339 (445)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~------~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~ 339 (445)
...+.++|..+|..||+.|||.+.+|++.++++.+.. ...++..+.++.+.++|+..+|++..+++.+.....+
T Consensus 236 ~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~ 315 (411)
T KOG1305|consen 236 IILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPG 315 (411)
T ss_pred HHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999954332 4789999999999999999999999888776652211
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 013326 340 MFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTL 419 (445)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~~i~~g~~ 419 (445)
+ +..++.+++..+..++....+.|+.+|+++++++++||++++.++|++|+++|++.+|+ ..+++...+...++++.
T Consensus 316 ~-~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~ 392 (411)
T KOG1305|consen 316 L-TSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVL 392 (411)
T ss_pred C-CCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHH
Confidence 1 11245667889999999999999999999999999999999999999999999999876 56777889999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 013326 420 VTIATTVAAVRIVVKHI 436 (445)
Q Consensus 420 ~~~~gt~~si~~i~~~~ 436 (445)
.++.|+...+.++..+-
T Consensus 393 ~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 393 LSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999998887653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-45 Score=329.88 Aligned_cols=423 Identities=14% Similarity=0.219 Sum_probs=354.4
Q ss_pred cccceeEEeeccCCCCCCCCccCC-------CC-cccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHH
Q 013326 4 TNNVAAALIIEEGQTKGSQNQESG-------AT-SAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCM 75 (445)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l 75 (445)
+++.+-+.+++|++-.+.+.+++. ++ +++.+.|.+-|||.+|.+|.+-|.=+++ ||+|...+||. ++..+
T Consensus 76 ~~p~e~r~eyQ~~s~~e~pq~~d~~~qg~~~~~G~Ge~~~kI~a~qAaWNVTNAIQGMFivg-LP~AvlhGGyw-~i~am 153 (524)
T KOG4303|consen 76 NPPPEDRLEYQESSVSEQPQKDDINKQGEAKDDGHGEASEKISALQAAWNVTNAIQGMFIVG-LPIAVLHGGYW-SIGAM 153 (524)
T ss_pred CCCCcccceeccccCCCCCCCCcccccccccccCCCCCCCccHHHHHhhhhhhhhheeeEec-cceeeeEcchh-HHHHH
Confidence 455667777888777665433332 12 2445678999999999999999999999 99999999997 89999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCc------ccccHHhHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013326 76 FFLAFYSLYSQWLLSAFHFIDGK------RFIRYRDLMGYLYGR-EMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV 148 (445)
Q Consensus 76 ~~~~~~~~~s~~ll~~~~~~~~~------~~~sy~~l~~~~~G~-~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 148 (445)
+.++.++.||+.++++|....++ .+.||.+++..+++| -|...+.+.+.+.+..+|+.|.++.+|.++.-++
T Consensus 154 vg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP- 232 (524)
T KOG4303|consen 154 VGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFP- 232 (524)
T ss_pred HhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCC-
Confidence 99999999999999998655431 257999999999988 4557788999999999999999999999988775
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CccccccCCccchHHH
Q 013326 149 SSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNK--SRDYEIQGSKTDKIYN 226 (445)
Q Consensus 149 ~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 226 (445)
+.+++.+-|+++..+.++|-+ ++++++-.+.+|..+++.-++.=++++.|+.....+.. ...+.. +..+
T Consensus 233 --~~svd~~sWm~i~~a~LLpc~-FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsi------di~~ 303 (524)
T KOG4303|consen 233 --GLSVDKASWMMITSASLLPCS-FLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSI------DINT 303 (524)
T ss_pred --CCCccccchhhhhhHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEE------Eccc
Confidence 567778889999999999999 99999999999999998887665566667666543322 111111 1234
Q ss_pred HHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHH
Q 013326 227 AIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVF 305 (445)
Q Consensus 227 ~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~ 305 (445)
++.++|+++|+| .|...|+++..|++|++ |.-.+..+-+.+.++-..+|.+||++||+.++..|.+|+|+ .-++.+
T Consensus 304 fPisvG~iVFsYTSqIFLP~LEGNM~~ps~--Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~ 380 (524)
T KOG4303|consen 304 FPISVGMIVFSYTSQIFLPNLEGNMKNPSQ--FNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKIL 380 (524)
T ss_pred CceEEEEEEEeeeceeeccccccccCChhH--heeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhh
Confidence 566789999999 99999999999999998 77788888999999999999999999999999999999996 357888
Q ss_pred HHHHHHHHHhhhhHhhhhhHHHHHHhhhcc-cccccc----cccchHHHH--HHHHHHHHHHHHHHHhccChHHHHHHhh
Q 013326 306 VNAAVFLQSLVSQHVFISPVYETLDTKLLV-LEESMF----SRENIKRRF--FVRGVIFTANIFVAAAFPFLGDFINVIG 378 (445)
Q Consensus 306 ~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~-~~~~~~----~~~~~~~~~--~~~~~~~~~~~~lA~~~p~~~~i~~l~G 378 (445)
++++.++..+.|||+=.+..++.+|+.+.. .+...| +.+...+.| ..|.++++.+.+.|+.+|+|..+++++|
T Consensus 381 VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~G 460 (524)
T KOG4303|consen 381 VNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVG 460 (524)
T ss_pred hhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 999999999999999888999999988665 222333 334445554 5888999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 013326 379 SFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQDYSF 441 (445)
Q Consensus 379 a~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~gt~~si~~i~~~~~~~~~ 441 (445)
+++++.++|+.|+++|++..++.....++..+..++++|...++.|.|-+..++++.++.-.+
T Consensus 461 s~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 461 SITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 999999999999999999988877777888999999999999999999999999998876544
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-34 Score=284.05 Aligned_cols=390 Identities=15% Similarity=0.066 Sum_probs=293.9
Q ss_pred ccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
.+.+.+..++++++.++++|+|+|+ +|++++..|+.++++++++.+.+++++.+++.|+..+.++++.+|.|++++.+|
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~-lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLF-LPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhh-hhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 4466788999999999999999999 999999999999999999999999999999999988875544599999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-cchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSP-VRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~-~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
|++++++++.+.+.+|+.+.+|.+..+|.+++.++...+.+ ..++.+.+++..++.+++ +.++...++..+.+....+
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~-~~~~~~~lk~ts~l~~~~v 162 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLS-WLGTLAVLKITSLLVFGKV 162 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998642233 677788888888889999 9999999999999887776
Q ss_pred HHHHHHHHHHHHHcCCCCCCccccccCCc-cchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHH
Q 013326 192 FTYVLILLVILVRDGTSNKSRDYEIQGSK-TDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVG 269 (445)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~ 269 (445)
...++... +...+. +.......+.. .....+...++|+++||| ||+++|++++|||++++++.+|+...+..+.
T Consensus 163 ~~~~~l~~-~~~~~~---~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~ 238 (415)
T COG0814 163 IYLVLLVV-YLIPHW---NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIA 238 (415)
T ss_pred HHHHHHHH-HHhccc---CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHH
Confidence 54333222 222221 11111110011 123456778899999999 9999999999999998867999999999999
Q ss_pred HHHHHHHHhHHHhhcCCccccccccccCCccH-------------HHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccc
Q 013326 270 LLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKW-------------IKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVL 336 (445)
Q Consensus 270 ~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~-------------~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~ 336 (445)
.++|..++..+|..+|+.++++++++.++.+. .....+++..+.+..|+--.....+|.+++.++++
T Consensus 239 ~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~ 318 (415)
T COG0814 239 LVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS 318 (415)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc
Confidence 99999999999999999999999999985432 23333333334344443333334455566655541
Q ss_pred ccccccccchHHHH--HHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 013326 337 EESMFSRENIKRRF--FVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTIQKKAWHWFNI 414 (445)
Q Consensus 337 ~~~~~~~~~~~~~~--~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~~i 414 (445)
+ ++-.++....+. ............++...|..+.+++.+|+.....+.++.|...+.|....+....++...+.++
T Consensus 319 ~-~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~ 397 (415)
T COG0814 319 N-SKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVL 397 (415)
T ss_pred c-CcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHH
Confidence 1 111111222222 3334555566677777888888899899988888888888887767654443333225678888
Q ss_pred HHHHHHHHHHHHHHH
Q 013326 415 LFFTLVTIATTVAAV 429 (445)
Q Consensus 415 ~~g~~~~~~gt~~si 429 (445)
++|+..+....++..
T Consensus 398 ~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 398 LFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889888877776543
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=3.4e-26 Score=225.74 Aligned_cols=370 Identities=15% Similarity=0.132 Sum_probs=265.9
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccch
Q 013326 36 HDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREM 115 (445)
Q Consensus 36 ~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g 115 (445)
+.+.+.+.+.+.++.+|+|+|+ ||.+.+..|+.++.+.+++++.+++++.+++.|..... ++..+|.+++++.+||+|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLa-LP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~-~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLA-LPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT-PEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHH-HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHhChHH
Confidence 5688999999999999999999 99999999999999999999999999999999976554 336899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHH
Q 013326 116 YYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYV 195 (445)
Q Consensus 116 ~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~ 195 (445)
+++..+...+..|+.+++|....++.+++.+....+.+.+++.-.+++.++...+. .. .-+...+.+..-+...+...
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv-~~-g~~~v~~~n~~lv~~~i~~~ 157 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIV-YF-GTKAVDRINRVLVFGMIISF 157 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764444444443344433333333 22 12233333332222222222
Q ss_pred HHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHH
Q 013326 196 LILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYY 274 (445)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~ 274 (445)
...+...+.+...+. .........++...+.++|++++|| .|+++|++.+.+++..| +.+|++..+..+..++|+
T Consensus 158 ~~l~~~~~p~~~~~~---L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~-k~~~ai~~Gs~i~lv~yl 233 (394)
T PF03222_consen 158 IILVVYLIPHWNPSN---LLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPK-KIRKAIIIGSLIPLVMYL 233 (394)
T ss_pred HHHHHHHhhhcCHHH---hhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHH-HHHHHHHHHHHHHHHHHH
Confidence 222222332221111 1111112234456778899999999 99999999999986544 599999999999888888
Q ss_pred HH--HhHH---------HhhcCCcccc--ccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccccccc
Q 013326 275 GV--TIIG---------YWAYGSSVSV--YLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMF 341 (445)
Q Consensus 275 ~~--g~~g---------y~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~~ 341 (445)
.. .+.| ....|++..+ ..+.+..++.+......++..+.+.+||--....++|.++|.++.++
T Consensus 234 ~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~---- 309 (394)
T PF03222_consen 234 LWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN---- 309 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 64 3333 1112211111 23333334567788889999999999999888899999999887633
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhccccch-H----HHHHHHHHHH
Q 013326 342 SRENIKRRFFVRGVIFTANIFVAAAFPF-LGDFINVIGSFSLIPLTFVFPSMVFIKAKAKASTI-Q----KKAWHWFNIL 415 (445)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~lA~~~p~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~~~-~----~~~~~~~~i~ 415 (445)
+...|.......++++.++|...|+ |-..+++.| .+...+..++|+++.+|.|++++.+ + .+.....++.
T Consensus 310 ---~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~ 385 (394)
T PF03222_consen 310 ---NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVII 385 (394)
T ss_pred ---cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHH
Confidence 2234566667788889999999997 899999999 8999999999999999998755422 2 2344455555
Q ss_pred HHHHHH
Q 013326 416 FFTLVT 421 (445)
Q Consensus 416 ~g~~~~ 421 (445)
+|+++.
T Consensus 386 ~~i~ii 391 (394)
T PF03222_consen 386 FGILII 391 (394)
T ss_pred HHHHHH
Confidence 555544
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.96 E-value=1.6e-26 Score=225.68 Aligned_cols=378 Identities=14% Similarity=0.068 Sum_probs=263.5
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccc
Q 013326 35 GHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGRE 114 (445)
Q Consensus 35 ~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~ 114 (445)
+|.+.+.+.+.+.++++|+|+|+ +|.+-++.|+.+++++++++++.+.||+.++.|.+... ++..++.+++|+.+||.
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLa-LP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~-~~g~~l~tma~~~LG~~ 84 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFA-LPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY-PVGSSFNTITKDLIGNT 84 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHcChH
Confidence 44478889999999999999999 99999999999999999999999999999999986655 34689999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHH
Q 013326 115 MYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTY 194 (445)
Q Consensus 115 g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~ 194 (445)
|+++.+++..+..|+.+++|+...++.+++.++...+.+.+.+.-.+++.++.-++. +..+ +...+.+..=....++.
T Consensus 85 g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v-~~gt-~~vd~~nr~l~~~~ii~ 162 (415)
T PRK09664 85 WNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVL-WISS-LAASRITSLFLGLKIIS 162 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHH-Hhch-hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986522234444444455555555554 3332 33333332222221111
Q ss_pred HHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHH
Q 013326 195 VLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFY 273 (445)
Q Consensus 195 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y 273 (445)
.+..+.....+.....-.+.+....+.........++|++++|| .|+++|++.+.+++..+ +.+|++..+..+..++|
T Consensus 163 f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~-~~~kaIl~Gs~IpLviY 241 (415)
T PRK09664 163 FVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKD-KLIKSVVFGSLLALVIY 241 (415)
T ss_pred HHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHH-HHHHHHHHHHHHHHHHH
Confidence 11111111111110000010100000000224667899999999 99999999999975543 48888888888888888
Q ss_pred HHH--HhHH---------HhhcCCcccccccc--ccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccccccc
Q 013326 274 YGV--TIIG---------YWAYGSSVSVYLPE--QIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESM 340 (445)
Q Consensus 274 ~~~--g~~g---------y~~fG~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~ 340 (445)
..- .+.| -...|+++++.+.. +-.+..+...+..++..+.+.+||--....++|.+.|.++.++
T Consensus 242 ~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~--- 318 (415)
T PRK09664 242 LFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDN--- 318 (415)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---
Confidence 643 3333 12233333221111 1123457778888888999999999988899999999987743
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc-ccchH----HHHHHHHHH
Q 013326 341 FSRENIKRRFFVRGVIFTANIFVAAAFPF-LGDFINVIGSFSLIPLTFVFPSMVFIKAKAK-ASTIQ----KKAWHWFNI 414 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lA~~~p~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~-~~~~~----~~~~~~~~i 414 (445)
+...|.....+.++++.++|...|+ |-..++..|.. ...+..++|+++-+|.||+ ....+ .+..-..++
T Consensus 319 ----~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~ 393 (415)
T PRK09664 319 ----SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVI 393 (415)
T ss_pred ----ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHH
Confidence 1234566677889999999999998 99999999985 6799999999999999875 22222 234555666
Q ss_pred HHHHHHHHHHH
Q 013326 415 LFFTLVTIATT 425 (445)
Q Consensus 415 ~~g~~~~~~gt 425 (445)
.+|++..+.-.
T Consensus 394 ~~g~~ii~~~~ 404 (415)
T PRK09664 394 LFGITVILCWF 404 (415)
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=2.7e-26 Score=224.29 Aligned_cols=375 Identities=11% Similarity=0.050 Sum_probs=265.5
Q ss_pred ccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
.+++.+.+.+.+.+.++.+|+|+|+ +|.+-++.|+.++++++++++..+.||+.++.|.+.+. ++..++.+++|+.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLa-LP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~-~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFS-LPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY-RIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHcC
Confidence 3567899999999999999999999 99999999999999999999999999999999976554 346899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITF 192 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~ 192 (445)
|+|+++.+++..+..|+.+++|+...++.+++.++.. +.+.+++.-.+++.++.-.+. +. ..+...+++..=...++
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~~~i~~~~~~llF~~~~~~iv-~~-gt~~vd~~n~~l~~~~i 161 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-SLNVPARAAGFGFALLVAFVV-WL-STKAVSRMTAIVLGAKV 161 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHH-Hh-hhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999753 334444444455555555544 33 22333333322222222
Q ss_pred HHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHH
Q 013326 193 TYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLL 271 (445)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~ 271 (445)
...+..+.....+.....-.+.+. .....+.....+++++++|| .|.++|++.+++++..+ +.+|++..+..+..+
T Consensus 162 ~~f~~~~~~l~~~i~~~~L~~~~~--~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~-kir~~I~iGs~Iplv 238 (414)
T PRK10483 162 ITFFLTFGSLLGHVQPATLFNVAE--SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPK-TIVKCLVYGTLMALA 238 (414)
T ss_pred HHHHHHHHHHHhhcCHHHHhcccc--ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHH-HHHHHHHHHHHHHHH
Confidence 111122222222211100001110 11111234668899999999 99999999999976544 699999999999999
Q ss_pred HHHHHHhHHHhhc-----------CCccccccccccC---CccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccc
Q 013326 272 FYYGVTIIGYWAY-----------GSSVSVYLPEQIG---GAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLE 337 (445)
Q Consensus 272 ~y~~~g~~gy~~f-----------G~~~~~~il~~~~---~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~ 337 (445)
+|+..=......- |++. +..+..+. ++.+...+..++..+.+.+||--....++|.+.|.++.++
T Consensus 239 ~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~ 317 (414)
T PRK10483 239 LYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDD 317 (414)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9997433332222 2222 11112222 3346667788888899999999988899999999988753
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc-ccchHHH----HHHH
Q 013326 338 ESMFSRENIKRRFFVRGVIFTANIFVAAAFPF-LGDFINVIGSFSLIPLTFVFPSMVFIKAKAK-ASTIQKK----AWHW 411 (445)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~p~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~-~~~~~~~----~~~~ 411 (445)
+...|.....+.++++.++|...|+ |-..+++.|.. ...+..++|+++.++.||+ +...++. ....
T Consensus 318 -------~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~ 389 (414)
T PRK10483 318 -------SAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIV 389 (414)
T ss_pred -------ccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHH
Confidence 1224556667889999999999998 89999999965 7888899999999999875 2223322 2234
Q ss_pred HHHHHHHHHHHHH
Q 013326 412 FNILFFTLVTIAT 424 (445)
Q Consensus 412 ~~i~~g~~~~~~g 424 (445)
.++.+|+...+..
T Consensus 390 ~~~~~g~~~i~~~ 402 (414)
T PRK10483 390 LILLFGVGNALVH 402 (414)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555444443
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=1.3e-24 Score=213.56 Aligned_cols=370 Identities=13% Similarity=0.058 Sum_probs=262.3
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchh
Q 013326 37 DSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMY 116 (445)
Q Consensus 37 ~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~ 116 (445)
.+.+.+.+.+.+|.+|+|+|+ ||.+.+..|+.++++++++++.+..|+++++.|..... ++..++.+++|+.+||+|+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLa-LPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~-~~~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLA-MPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV-PADTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHH-HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhChHHH
Confidence 377899999999999999999 99999999999999999999998999999999965444 3457899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHH
Q 013326 117 YYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVL 196 (445)
Q Consensus 117 ~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~ 196 (445)
++..++..+..|..+.+|....++.+.+.++.+-+.+.+.....+++.++.-... +. ..+...++..+=+...+...+
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv-~~-g~~~v~~~n~~L~~~~ii~~~ 158 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVV-CV-GTSSVDLFNRFLFSAKIIFLV 158 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-hc-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988886532223333344444433333333 22 223333333222211111111
Q ss_pred HHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHH
Q 013326 197 ILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYG 275 (445)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~ 275 (445)
....+.+.+.... .....+.+. + ....+++++.+|| .|.++|++.+.+++..+ |.+|++..+..+..++|+.
T Consensus 159 ~~~~~l~p~~~~~---~L~~~~~~~-~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~-~~~k~i~~Gs~i~li~yl~ 231 (403)
T PRK15132 159 VMLALMMPHIHKV---NLLTLPLQQ-G--LALSAIPVIFTSFGFHGSVPSIVSYMGGNIR-KLRWVFIIGSAIPLVAYIF 231 (403)
T ss_pred HHHHHHHHhcCHH---HHhcCCccc-c--HHHHHHHHHHHHhhCCcccHHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHH
Confidence 2222222222111 110000111 1 2677889999999 99999999999975543 5999999999999999987
Q ss_pred HHhHHHhhcCCcc-----cc-----ccccccC---CccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccccccccc
Q 013326 276 VTIIGYWAYGSSV-----SV-----YLPEQIG---GAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFS 342 (445)
Q Consensus 276 ~g~~gy~~fG~~~-----~~-----~il~~~~---~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~~~ 342 (445)
.=......-+.+. ++ +++..+. +..+...+..++..+.+.+||--....++|.+.|.++.++
T Consensus 232 W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~----- 306 (403)
T PRK15132 232 WQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN----- 306 (403)
T ss_pred HHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-----
Confidence 6555444443221 11 2223222 3457777888888899999999888899999999887533
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc-cchH----HHHHHHHHHHH
Q 013326 343 RENIKRRFFVRGVIFTANIFVAAAFPF-LGDFINVIGSFSLIPLTFVFPSMVFIKAKAKA-STIQ----KKAWHWFNILF 416 (445)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~lA~~~p~-~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~-~~~~----~~~~~~~~i~~ 416 (445)
+...|.....+.++++.++|...|+ |...+++.|. ..+.+.+++|+++.+|.+|++ ..+. .+...+.++.+
T Consensus 307 --~~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~ 383 (403)
T PRK15132 307 --TVGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLC 383 (403)
T ss_pred --cccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHH
Confidence 1223666778899999999999997 8999999996 578999999999999998754 2122 34556777777
Q ss_pred HHHHHHHHH
Q 013326 417 FTLVTIATT 425 (445)
Q Consensus 417 g~~~~~~gt 425 (445)
|++..+.-.
T Consensus 384 G~~~i~~~~ 392 (403)
T PRK15132 384 GIAVIGIQF 392 (403)
T ss_pred HHHHHHHHH
Confidence 776665544
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.94 E-value=1.1e-24 Score=216.51 Aligned_cols=342 Identities=14% Similarity=0.079 Sum_probs=251.5
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHHHHHH
Q 013326 43 GFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAI 122 (445)
Q Consensus 43 ~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i~~i~ 122 (445)
+...+++++|+|+++ +|..+++.|+..+.+.+++.++++.++..++.|..... ++..++.+.+++.+||++++++.+.
T Consensus 3 ~~lv~gt~IGaGIl~-lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-p~~~~~~~~~~~~~G~~~g~~~~~~ 80 (381)
T TIGR00837 3 ALIIAGTTIGAGMLA-LPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-PGGASFNTIAKDLLGKTGNIIAGLS 80 (381)
T ss_pred eEEeehhhHhHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHhCHHHHHHHHHH
Confidence 445689999999999 99999999999999999999999999999999976554 3357899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 013326 123 QYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVIL 202 (445)
Q Consensus 123 ~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~ 202 (445)
..+.++..+.+|.+..++.+..+++.........+.+.+++.+++.++ ..+..+...+++.+.+...+..++..++..
T Consensus 81 ~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l--~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~ 158 (381)
T TIGR00837 81 LLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSF--VWLSTSAVDRITRVLIFGKIIAFALVFSGL 158 (381)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH--HHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988643222233333333333333333 455667777777766665544433333333
Q ss_pred HHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHHH
Q 013326 203 VRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGY 281 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy 281 (445)
..+.... +....+.+.....+...+++...++| +|.++|++.+|++++ +|+.+|++..+..+++++|++......
T Consensus 159 ~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~~~~~~ 234 (381)
T TIGR00837 159 LPHVKGD---LLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILWQLATM 234 (381)
T ss_pred HhhccHH---HHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332111 11000011122346778889999999 898999999999866 446999999999999999998877766
Q ss_pred hhcCCccc-------cc------cccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccccccccccchHH
Q 013326 282 WAYGSSVS-------VY------LPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKR 348 (445)
Q Consensus 282 ~~fG~~~~-------~~------il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 348 (445)
...+.+.- ++ ...+.-...+...+..++..+.+..++.-...+..|.+.+.+++++ ++.+
T Consensus 235 g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-------~~~~ 307 (381)
T TIGR00837 235 GNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-------SKKG 307 (381)
T ss_pred CCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------ccCC
Confidence 66554321 11 1111112335667788888888999999888888888888877632 1123
Q ss_pred HHHHHHHHHHHHHHHHHhccChH-HHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 013326 349 RFFVRGVIFTANIFVAAAFPFLG-DFINVIGSFSLIPLTFVFPSMVFIKAKAK 400 (445)
Q Consensus 349 ~~~~~~~~~~~~~~lA~~~p~~~-~i~~l~Ga~~~~~l~filP~l~~~~~~~~ 400 (445)
|+....+..+++.++|.+.|+.. ..++..| +....+.+++|+++++|.||+
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 56667778899999999999855 9999999 888999999999999998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.89 E-value=2.1e-19 Score=175.84 Aligned_cols=381 Identities=9% Similarity=-0.004 Sum_probs=252.1
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccc
Q 013326 35 GHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGRE 114 (445)
Q Consensus 35 ~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~ 114 (445)
+.++.|- ..+.++.+|+|+|+ ||-.....|..++++++++.+.+++++.+.+.|.....+++..++.|++++.+||+
T Consensus 19 ~~d~~W~--l~l~GTAIGAGmLf-LPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~ 95 (443)
T PRK13629 19 KSDTTWT--LGLFGTAIGAGVLF-FPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKT 95 (443)
T ss_pred cccchHH--HHHHHHHHhHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChh
Confidence 3344444 88999999999999 99999999999999999999999999999999975554345679999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 013326 115 MYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDS-PVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFT 193 (445)
Q Consensus 115 g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~ 193 (445)
|+.+..++..+..|..+.+|.....+.+++.+.+.-+. ..++....+++.+++.... ... -+.+-+++..=+...+.
T Consensus 96 g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv-~~G-~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 96 GGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVI-WFG-KDLMVKVMSYLVWPFIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888865543222 3344444444444444443 222 23333333222221111
Q ss_pred HHHHHHHHHHHcCCCCCCccccc---cCC-ccchHHHHHHHHHHHHHHh-cccchhhhhcccccc-------c--ccchH
Q 013326 194 YVLILLVILVRDGTSNKSRDYEI---QGS-KTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQP-------A--VMNMR 259 (445)
Q Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p-------~--~~~~~ 259 (445)
..+....+.+-+.....-.+.+. +.. +.........++|++++|| .|..+|++...+|+. + ++|.+
T Consensus 174 ~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ 253 (443)
T PRK13629 174 SLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCS 253 (443)
T ss_pred HHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHH
Confidence 11122222222221110000110 000 1011134677889999999 899999999884222 3 46799
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCcc-----cccc--ccc----cCC---c-----cHHHHHHHHHHHHHHhhhhHh
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYGSSV-----SVYL--PEQ----IGG---A-----KWIKVFVNAAVFLQSLVSQHV 320 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~-----~~~i--l~~----~~~---~-----~~~~~~~~~~~~~~~~~s~~l 320 (445)
|++..+..+..++|+..-+.....-+.+. ++|+ +.. +++ . .+......++..+.+..||--
T Consensus 254 rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlG 333 (443)
T PRK13629 254 QIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFG 333 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766666655432 1222 222 222 1 346666777777888889888
Q ss_pred hhhhHHHHHHhhhcc----cccccccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 013326 321 FISPVYETLDTKLLV----LEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIK 396 (445)
Q Consensus 321 ~~~p~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~ 396 (445)
....++|.++....+ +++++. +.+..+......+++.+..+|..=|++=++++-.|+--...+.|++|...-.|
T Consensus 334 v~LGl~E~l~gl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~k 411 (443)
T PRK13629 334 HYLGTLEGLNGLILKFGYKGDKTKV--SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRK 411 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccc--CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 888888888877632 111111 23334556667788888899999999999999777777889999999977666
Q ss_pred HhccccchHHHHHHHHHHHHHHHHHHH
Q 013326 397 AKAKASTIQKKAWHWFNILFFTLVTIA 423 (445)
Q Consensus 397 ~~~~~~~~~~~~~~~~~i~~g~~~~~~ 423 (445)
.-.-++.|- +..++.+.+.|++-...
T Consensus 412 vp~l~~yr~-~~~n~fv~~~Gl~~i~~ 437 (443)
T PRK13629 412 APSLAKYRG-RLDNVFVTVIGLLTILN 437 (443)
T ss_pred cHHHHHhCC-CchhHHHHHHHHHHHHH
Confidence 643222221 23467777777665433
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=2.5e-18 Score=169.62 Aligned_cols=350 Identities=9% Similarity=0.011 Sum_probs=240.0
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHHHHH
Q 013326 42 MGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWA 121 (445)
Q Consensus 42 a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i~~i 121 (445)
=.+.+.++++|+|+|+ +|-..++.||...++..++...+++++.+++.|..-..+....++.|++++.+||+++.+..+
T Consensus 8 w~~~l~gt~IGaGiL~-LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~ 86 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLF-LPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITL 86 (397)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHH
Confidence 3678899999999999 999999999998888888888888999988888644432335789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 013326 122 IQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVI 201 (445)
Q Consensus 122 ~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 201 (445)
...+..+..+.+|.....+.+.+.+...-..+...+....+..++++... .....+.+.+++.+-+...+...+....+
T Consensus 87 lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~i-v~~G~~~i~r~~~il~~~~ii~l~~l~~~ 165 (397)
T TIGR00814 87 LYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAI-MSFGEKLLFKIMGPLVFPLVLILVLLSLY 165 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988886531112122222222222222233 34456666666655543333333333333
Q ss_pred HHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhh----ccccccc--ccchHHHHHHHHHHHHHHHH
Q 013326 202 LVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQ----STLRQPA--VMNMRKALYSQYTVGLLFYY 274 (445)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~----~~mk~p~--~~~~~~~~~~s~~~~~~~y~ 274 (445)
.+.+...+. ....+...+...+...++++.++|| +|.++|++. +|.++|+ ++|.+|+...+..+.+++|+
T Consensus 166 lip~~~~~~---L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~ 242 (397)
T TIGR00814 166 LIPHWNGAN---LTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVM 242 (397)
T ss_pred HHHHcCHHH---HhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333321111 1000011112356788899999999 999999997 3344233 55689999999999999998
Q ss_pred HHHhHHHhhcCCcc-----ccc--ccccc---CCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcc-c--ccccc
Q 013326 275 GVTIIGYWAYGSSV-----SVY--LPEQI---GGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLV-L--EESMF 341 (445)
Q Consensus 275 ~~g~~gy~~fG~~~-----~~~--il~~~---~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~-~--~~~~~ 341 (445)
..-.......+.+. ++| .+..+ .+..+...+..++..+.+..|+--....++|.+++.+.+ + ++++
T Consensus 243 ~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~- 321 (397)
T TIGR00814 243 FFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKK- 321 (397)
T ss_pred HHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccc-
Confidence 87777766666433 122 12211 123456666777777788888888888888988887732 1 1111
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 013326 342 SRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAK 398 (445)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~ 398 (445)
.+++..+......+++.+..+|..=|++=++++-.|+--...+.|++|...-.|.-
T Consensus 322 -~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 322 -INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP 377 (397)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence 12233345566677788888999999999999977777778999999997766653
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.64 E-value=5.7e-12 Score=127.72 Aligned_cols=240 Identities=13% Similarity=0.025 Sum_probs=148.3
Q ss_pred ccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
++|+.+.++++...+++++|+|++. +|..+++.|- .+++..++.+++.........|..... ++.-...+-.++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~-~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~-P~~GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIM-LPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFS-RKSGGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHH-hHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCchHHHHHHHcC
Confidence 3578999999999999999999999 9999988886 356666666666666666666643322 112233456889999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcch-hHHHHHHHHH-HHHhhhhCCCcchhhHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRL-QIYILISGLA-FFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~-~~~~~i~~~~-~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
|+..++......+.......++.....+++..+++. ..+. ..+.....++ ++-.. ..+..+....+..+.+..
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~----~~~~~~~~~~~~~~l~~~~~l-n~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA----TLSPVQICLATIGVLWLCTVA-NFGGARITGQISSVTVWG 155 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHH
Confidence 988888888776666555555555555666555431 1111 1222222211 22222 455555555555444433
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHH
Q 013326 191 TFTYVLILLVILVRDG-TSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTV 268 (445)
Q Consensus 191 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~ 268 (445)
.+..+++......... .+........ .....+..+..++....|+| |......+-+|+|||+| +.+|++..+..+
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~ 232 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLYVAAWNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER-NVPIAVLGGTLG 232 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCcCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc-cccHHHHHHHHH
Confidence 3322222222222221 1111111111 11111235666778899999 99999999999999987 699999999999
Q ss_pred HHHHHHHHHhHHHhh
Q 013326 269 GLLFYYGVTIIGYWA 283 (445)
Q Consensus 269 ~~~~y~~~g~~gy~~ 283 (445)
..++|++........
T Consensus 233 ~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 233 AAVIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999876554433
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.61 E-value=1.7e-11 Score=124.53 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=145.3
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhc
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLY 111 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~ 111 (445)
+++|+.+.++++...+++++|+|++. +|...++.|.. .+...++.++........+.|......+ .-...+-+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~-~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFL-LPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHh-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHHc
Confidence 35678999999999999999999999 99998887742 3444444455555555556664333211 112223488899
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH-HH-HHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 112 GREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILI-SG-LAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 112 G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i-~~-~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
||...+++.....+.......+......++...+.+... ......++ .. +.++-.. ..+..+...++....+.
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l-n~~gvk~~~~i~~i~~~ 156 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPLVLTITCVVVLWIFVLL-NIVGPKMITRVQAVATV 156 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHH
Confidence 998888877776665544445544444455554443211 11111111 11 1122222 45556666666655544
Q ss_pred HHHHHHHHHHHHHHHcCCCCC-CccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHH
Q 013326 190 ITFTYVLILLVILVRDGTSNK-SRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYT 267 (445)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~ 267 (445)
..++.++.............. ....+. .+...+..+..++....|+| |.......-+|+|||+| +.+|++..+..
T Consensus 157 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iPrai~~s~~ 233 (445)
T PRK10644 157 LALIPIVGIAVFGWFWFRGETYMAAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGVL 233 (445)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccc--cccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-chhHHHHHHHH
Confidence 433222222222222111110 011111 11122345556778899999 99999999999999987 69999999999
Q ss_pred HHHHHHHHHHhHHHhhcC
Q 013326 268 VGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 268 ~~~~~y~~~g~~gy~~fG 285 (445)
+..++|.+....-....+
T Consensus 234 i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 234 IAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999988776444333
No 18
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.60 E-value=5.4e-12 Score=130.88 Aligned_cols=358 Identities=9% Similarity=-0.035 Sum_probs=200.4
Q ss_pred cccccCCChHHHHHHHHHHhhhhhhhhhhhHHHH--HhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCc--ccccHHh
Q 013326 30 SAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLIL--VPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGK--RFIRYRD 105 (445)
Q Consensus 30 ~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af--~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~--~~~sy~~ 105 (445)
+++.+|+.+.++.+...++.++|+|++. +|-.. ...|.. .++..++.++.+........|......+ ..+.|
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~-l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y-- 98 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYV-LTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLY-- 98 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhh-hhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceee--
Confidence 3456799999999999999999999999 88643 347754 4555566666666666667775433211 13444
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-------C---CCcchh-HHHHHHHHHHHHhhhh
Q 013326 106 LMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVS-S-------D---SPVRLQ-IYILISGLAFFIFANL 173 (445)
Q Consensus 106 l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~-~-------~---~~~~~~-~~~~i~~~~~~pl~~~ 173 (445)
.++.+|+...+++.....+.....+.+.....++++..++... . + ...... .+..+..++++-.. .
T Consensus 99 -~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~l-n 176 (557)
T TIGR00906 99 -SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVL-L 176 (557)
T ss_pred -HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHH-H
Confidence 5677899888888888877776666666666677776665421 0 0 001111 11122222222233 5
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-ccc--ccCCccchHHHHHHHHHHHHHHh-cccchhhhhcc
Q 013326 174 VPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSR-DYE--IQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQST 249 (445)
Q Consensus 174 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~ 249 (445)
.+..+..++++.+.+...+..+++.++.+..+....+.. ... ..+..+..+.+++.+.....|+| |...+...-+|
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE 256 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEE 256 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHh
Confidence 677777777776666555443333333343333211100 000 00111123456778889999999 99999999999
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCc---cccccccccC--CccHHHHHHHHHHHHHHhhhhHhhhhh
Q 013326 250 LRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSS---VSVYLPEQIG--GAKWIKVFVNAAVFLQSLVSQHVFISP 324 (445)
Q Consensus 250 mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~---~~~~il~~~~--~~~~~~~~~~~~~~~~~~~s~~l~~~p 324 (445)
+|||+| +++|++..++.+++++|.++...-...-+.+ .++++...+. ..++...+..+.....+..+.......
T Consensus 257 ~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~ 335 (557)
T TIGR00906 257 VKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFP 335 (557)
T ss_pred ccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 6999999999999999998876643333321 1111111111 123444444444444444433332223
Q ss_pred HHHHHHhhhcccc-cccccc---c-chHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 325 VYETLDTKLLVLE-ESMFSR---E-NIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 325 ~~~~l~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
.-+.+...-+++. .+.+++ + +...+. ..+..+++.+++.. .+++.+.++.. .+..+.|.++++..+.+|+
T Consensus 336 ~sRil~amarDGlLP~~fakv~~r~~tP~~A--il~~~iv~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 336 LPRVIYAMARDGLLFKWLAQINSKTKTPINA--TVVSGAIAALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHcCCCccHHHhccCCCCCCcHHH--HHHHHHHHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 2233322222100 001111 1 111111 11222233334433 35677766654 3457889999888777764
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.59 E-value=2e-11 Score=123.47 Aligned_cols=242 Identities=11% Similarity=0.018 Sum_probs=147.1
Q ss_pred ccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
++|+.+.++.+...+++++|+|++. +|...++.|-. .+...++.++..........|.....++ .-...+-+++ +|
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~-lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g 78 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIAL-LPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-IS 78 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHH-HHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HC
Confidence 5688999999999999999999999 99999988763 4555555555555555556664333212 1233344566 79
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH-HHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISG-LAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~-~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
|...+++.............++.+...+++..+.+...+ + ...+..... +.++-+. ..+..+..+.+..+.++..
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~-~--~~~~~~~~~i~~~~~~l-n~~gvk~~~~i~~i~~~~~ 154 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLND-P--IPAGIACIAIVWVFTFV-NMLGGTWVSRLTTIGLVLV 154 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-h--HHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHH
Confidence 988887777666555445555556566666665542211 1 111111111 1122223 4555566655555444433
Q ss_pred HHHHHHHHHHHHHcCCCCC-CccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHH
Q 013326 192 FTYVLILLVILVRDGTSNK-SRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVG 269 (445)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~ 269 (445)
++.++........+..... ..+++. ....+..++..++....|+| |.......-+|+|||+| +.+|++..+..++
T Consensus 155 li~~~~~~i~g~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r-~iPrAi~~~~~iv 231 (435)
T PRK10435 155 LIPVVGTAIVGWHWFDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR-TVPLATMLGTGLA 231 (435)
T ss_pred HHHHHHHHHHHHHHcCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc-cccHHHHHHHHHH
Confidence 3222222222222211110 011111 11123457788889999999 99999999999999976 6999999999999
Q ss_pred HHHHHHHHhHHHhhcC
Q 013326 270 LLFYYGVTIIGYWAYG 285 (445)
Q Consensus 270 ~~~y~~~g~~gy~~fG 285 (445)
.++|++.........+
T Consensus 232 ~ilYil~~~~~~~~~p 247 (435)
T PRK10435 232 GIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999988776554443
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.59 E-value=3e-11 Score=123.57 Aligned_cols=246 Identities=9% Similarity=-0.020 Sum_probs=150.3
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLG-WKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G-~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
+|+.+.+++....+++++|+|++. +|....+.| -...++..++.++..........|.....+++.-...+..++.+|
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~-~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFS-LPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHH-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 578999999999999999999999 999887654 222344455555555556666666443321212223355799999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH-HHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISG-LAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~-~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
|+..++......+.......++.....+.+..+.+.... ......+..... ..+.-.. ..+..+...++..+.....
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~-~~~~~~~~~~~~~~~~~~~l-n~~Gi~~~~~i~~~~~~~~ 162 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS-GNPVPSILGASVLLWVFTFL-VLRGVRQAAFINTITTIAK 162 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCcHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHH
Confidence 999888888777666555666666666666666652211 111111221111 2222233 5667777777776665544
Q ss_pred HHHHHHHHHHHHH--cCCCCCCccccccC-Cc-cchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHH
Q 013326 192 FTYVLILLVILVR--DGTSNKSRDYEIQG-SK-TDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQY 266 (445)
Q Consensus 192 ~~~~~i~~~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~ 266 (445)
+..++..++..+. +..... .+..... +. ...+..+..++....|+| |......+.+|+|| + |+.+|++..+.
T Consensus 163 l~~l~~~ii~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~-r~iPrai~~~~ 239 (473)
T TIGR00905 163 LIPLFLFIIIGWFWFKLDLFT-ADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K-SDVGKATVLGT 239 (473)
T ss_pred HHHHHHHHHHHHHHhCchhcc-cccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c-ccchHHHHHHH
Confidence 3322222222221 211110 0110000 01 112345667788899999 99999999999999 4 46999999999
Q ss_pred HHHHHHHHHHHhHHHhhcC
Q 013326 267 TVGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 267 ~~~~~~y~~~g~~gy~~fG 285 (445)
.++.++|++.........+
T Consensus 240 ~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 240 LGALVIYILITLLSLGVLP 258 (473)
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999988766544433
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=99.57 E-value=6.5e-12 Score=126.99 Aligned_cols=239 Identities=12% Similarity=0.010 Sum_probs=156.4
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVP-LGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~-~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
+|+.+.++.+...+++++|+|++. +|....+ .|.. ..+..++.+++.......+.|..+..++ .-...+-.++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~-~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFV-VTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHH-hHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhC
Confidence 578999999999999999999999 8866554 4442 4445555566666666666675433312 2233355788999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchh---------H--HHHHHHHHHHHhhhhCCCcchhh
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQ---------I--YILISGLAFFIFANLVPTMSAIR 181 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~---------~--~~~i~~~~~~pl~~~~~~l~~l~ 181 (445)
|+..++......+.....+..+....++.+..+++... .+.... . +..+...+++-.. ..+..+...
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~~g~~~~~ 156 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVG-LDLPAVLTAKPGNGGVFNLPALLIVLFLTYI-LYLGAKESG 156 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCchhhhcCCcccccccHHHHHHHHHHHHH-HHhCcHHHH
Confidence 99999988888888777888888888888887775320 011100 0 1112222233333 566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHH
Q 013326 182 RWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRK 260 (445)
Q Consensus 182 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~ 260 (445)
+++.+.....+..++..++....+.... +.... ...+...+..++....++| |........+|+|||+| +.+|
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r-~ip~ 230 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASN---NYTPF--MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPER-DIPK 230 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHH---hcCCC--CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc-cccH
Confidence 7777666555443333333333332111 11111 1122346678888999999 99999999999999975 6999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhh
Q 013326 261 ALYSQYTVGLLFYYGVTIIGYWA 283 (445)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~ 283 (445)
++..+..+..++|++........
T Consensus 231 ai~~~~~~~~v~Yil~~~~~~~~ 253 (429)
T TIGR00909 231 AIILSLIVVTLLYVLVAAVILGA 253 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999887655433
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.56 E-value=5.3e-11 Score=121.57 Aligned_cols=358 Identities=11% Similarity=0.008 Sum_probs=187.3
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326 35 GHDSWQQMGFMLVIVFNCGYILSFSNLILV-PLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR 113 (445)
Q Consensus 35 ~~~s~~~a~~~l~~~~iG~GiLs~lP~af~-~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~ 113 (445)
|+.+.++++...+++++|+|++. +|.... ..|....++..++.++..........|.....++..-...+-+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~-~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFS-LPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHH-hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 57899999999999999999999 988755 4454333444556666666666666664433211111233458999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH-HHHHHHhhhhCCCcchhhHHHHHHHHHHH
Q 013326 114 EMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILIS-GLAFFIFANLVPTMSAIRRWLAVSFIITF 192 (445)
Q Consensus 114 ~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~-~~~~~pl~~~~~~l~~l~~~s~~~~~~~~ 192 (445)
+..+++....++.......++.......+..+.+...+ ......+.... .+..+-.. ..+..+..++++....+..+
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~l-n~~Gv~~~~~i~~i~~~~ki 157 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-GNNPPSIIGASVLLWCVHFL-VLRGVEGAAFINTITTIAKL 157 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CCcHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHH
Confidence 98888888777766555566666555555555432211 11111122111 12222333 45666666666665554433
Q ss_pred HHHHHHHHHHH--HcCCCCCCccc-ccc-CCcc-chHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHH
Q 013326 193 TYVLILLVILV--RDGTSNKSRDY-EIQ-GSKT-DKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQY 266 (445)
Q Consensus 193 ~~~~i~~~~~~--~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~ 266 (445)
..++..++... .+......... +.. +.+. ..+..+..++....|+| |......+.+|.||+ |+.+|++..+.
T Consensus 158 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~--k~ip~ai~~~~ 235 (468)
T TIGR03810 158 VPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR--SDVGKATVIGL 235 (468)
T ss_pred HHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc--ccchHHHHHHH
Confidence 22222222111 11111100000 000 0011 11234556778899999 998888888999984 35999999999
Q ss_pred HHHHHHHHHHHhHHHhhcCCcc----ccc----cccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccc-
Q 013326 267 TVGLLFYYGVTIIGYWAYGSSV----SVY----LPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLE- 337 (445)
Q Consensus 267 ~~~~~~y~~~g~~gy~~fG~~~----~~~----il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~- 337 (445)
.....+|.+..+..+...+++. +++ +..+.. .++...+..+...++.+.+..-.....-|.+...-++..
T Consensus 236 ~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~l 314 (468)
T TIGR03810 236 IGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLM 314 (468)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999998877665544221 111 111111 123444555555555555443332222222221111100
Q ss_pred cccc---cccchHHHHHHHHHHHHHHHHHHHhc--cChHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 013326 338 ESMF---SRENIKRRFFVRGVIFTANIFVAAAF--PFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAK 400 (445)
Q Consensus 338 ~~~~---~~~~~~~~~~~~~~~~~~~~~lA~~~--p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~ 400 (445)
.+.+ +++..+.+-..-...+.....+.... +.++.+.++.+. ...+.|+++++.+++.+++
T Consensus 315 P~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 315 PKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred cHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 0001 01122222222211111111111112 235566665443 4568899999988888654
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.54 E-value=1.3e-10 Score=118.90 Aligned_cols=244 Identities=12% Similarity=0.003 Sum_probs=143.2
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLI-LVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
+.+|+.+.++.....++.++|+|++. .|-. .+.+|-...++..++.+++.......+.|......+ .-.+.+-.++.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~-~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~~ 88 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFF-NTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAARY 88 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHh
Confidence 35688999999999999999999998 6655 567775434556666667677677767775433212 23455678889
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
+|+...+++....++.....+.......+..++.+.+ ......+.+++. +++-+. ..+..+....++......
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~~-~~~~~i-n~~gvk~~~~~~~~~~~~ 161 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-----QVPVWPWCLLFC-ALIFGL-NVVSTRFFAEGEFWFSLI 161 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cCcHHHHHHHHH-HHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 9998888777777666555444434444444433322 111222222222 222233 445555554444333222
Q ss_pred HHHHHHHHHHHHH--HcC--C--C-CCC---ccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchH
Q 013326 191 TFTYVLILLVILV--RDG--T--S-NKS---RDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 191 ~~~~~~i~~~~~~--~~~--~--~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~ 259 (445)
.+..++..+...+ ..+ . + .+. .+....+..+.....+..++....|+| |.......-+|+|||+| +++
T Consensus 162 ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~iP 240 (471)
T PRK11387 162 KVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAK-VIP 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh-HHH
Confidence 2211111111111 100 0 0 000 011111111122345667778889999 99999999999999986 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcC
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG 285 (445)
|++..+..+..++|+..........+
T Consensus 241 rAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 241 VAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999987765444433
No 24
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.53 E-value=1.1e-10 Score=118.74 Aligned_cols=242 Identities=8% Similarity=0.042 Sum_probs=155.1
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSN-LILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP-~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
+.+|+.+.++.....+++++|+|++. +| .+.++.|.. +++..++.+++.......+.|..... +..-...+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~-~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~-P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFV-GSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVAN-PDTGSFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHH-hhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 36788999999999999999999999 98 778888864 66677777777777777777754332 1123456778999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHH-HHHHhhhhCCCcchhhHHHHHHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGL-AFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~-~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
+||+..+++.....+.....+.+.....+..++.+.+. . ..|.....+ .+.-.. ..+..+...++.....+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~--~~~~~~~~~~~~~~~~-n~~gv~~~~~~~~~~~~ 157 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-----I--PLWLFSLILTIVLTLT-NLYSVKSYGEFEFWFAL 157 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----C--cHHHHHHHHHHHHHHH-HHHhcchhhHHHHHHHH
Confidence 99999998888887777777777767777777765432 1 223322222 222222 44555555555544443
Q ss_pred HHHHHHHHHHHHH---HHcCCCC-CCc---ccc-ccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHH
Q 013326 190 ITFTYVLILLVIL---VRDGTSN-KSR---DYE-IQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRK 260 (445)
Q Consensus 190 ~~~~~~~i~~~~~---~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~ 260 (445)
..+..++..++.. .....+. ... +.. ..+..++.+.++..++....|+| |......+.+|+|||+| +.+|
T Consensus 158 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r-~iPr 236 (452)
T TIGR01773 158 IKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK-SITR 236 (452)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh-HHHH
Confidence 3222221111111 1111111 100 000 01111223446788889999999 99999999999999986 6999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcC
Q 013326 261 ALYSQYTVGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fG 285 (445)
++..+......+|+..........+
T Consensus 237 Ai~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 237 ATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 9988888888899876554443333
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.52 E-value=1.7e-10 Score=117.79 Aligned_cols=240 Identities=10% Similarity=0.060 Sum_probs=148.3
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhhhhhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYILSFSN-LILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGY 109 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP-~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~ 109 (445)
.+.+|+.+.++.....+++++|+|++. .| .+.+++|. ..+...++.+++.......+.|..... .+..++.+.+++
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~-~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~-~~~~~~~~ya~~ 92 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFM-GSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN-LEYKSFSDFASD 92 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHH-HhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHH
Confidence 447789999999999999999999999 64 58888887 345566666666666666666654322 223356688999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 110 LYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 110 ~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
.+|+...+++.....+.......+.....+.+++.+.+. .....+..+ .+.++... ..+..+...+++.....
T Consensus 93 ~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-----~~~~~~~~~-~~~~~~~i-N~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-----LSDWVASLA-VVLLLLSL-NLATVKMFGEMEFWFAM 165 (469)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CcHHHHHHH-HHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 999999998888887766555555555566666554431 122222222 12222223 45556666666554443
Q ss_pred HHHHHHHHHHHHHHH---cC---CCCCCc---cc-cccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccch
Q 013326 190 ITFTYVLILLVILVR---DG---TSNKSR---DY-EIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNM 258 (445)
Q Consensus 190 ~~~~~~~i~~~~~~~---~~---~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~ 258 (445)
..+..++..++.++. .. .+.... +. +..+..++.+..+..++....|+| |.......-+|+|||+| ++
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~i 244 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK-SL 244 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh-HH
Confidence 332222222221111 11 111000 00 000011123445778889999999 99999999999999986 69
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 013326 259 RKALYSQYTVGLLFYYGVTIIGY 281 (445)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy 281 (445)
+|++..+.....++|.+......
T Consensus 245 Prai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 245 PRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHe
Confidence 99998777777888886655543
No 26
>PRK10249 phenylalanine transporter; Provisional
Probab=99.52 E-value=2.7e-10 Score=115.99 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=149.2
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNL-ILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
+.+|+.+.++.....++.++|+|++. .|- +.+++|- ..++..++.+++.......+.|..... ++.-+..+.+++.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~-~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~-P~~Gg~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFL-GIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEE-PVSGSFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHH-HHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Confidence 45688999999999999999999999 765 5556676 366667777777777777777754433 2233556678999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
+|+...+++.....+.......+.....+..++.+.+. .....+..++ ..++-.. ..+..+..+++.....+.
T Consensus 95 ~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~-~~l~~~l-N~~gv~~~~~i~~~~~~i 167 (458)
T PRK10249 95 WGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-----VPTWIWAAAF-FIIINAV-NLVNVRLYGETEFWFALI 167 (458)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----CcHHHHHHHH-HHHHHHH-HHhcchhhhhHHHHHHHH
Confidence 99998888888777766555555555566666554421 1122222222 2222223 555666555554433322
Q ss_pred HHHHHHHHHHH---HHHcCCCCCCcccc--cc--CCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHH
Q 013326 191 TFTYVLILLVI---LVRDGTSNKSRDYE--IQ--GSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKAL 262 (445)
Q Consensus 191 ~~~~~~i~~~~---~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~ 262 (445)
.+..++..++. ....+...+..+.. .. +.....+..+..++....|+| |.......-+|+|||+| +.+|++
T Consensus 168 kv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k-~iPrai 246 (458)
T PRK10249 168 KVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK-SIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh-HHHHHH
Confidence 22111111111 11111111101110 00 001123445678889999999 99999999999999987 699999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhc
Q 013326 263 YSQYTVGLLFYYGVTIIGYWAY 284 (445)
Q Consensus 263 ~~s~~~~~~~y~~~g~~gy~~f 284 (445)
..+.....++|...........
T Consensus 247 ~~~~~~~~~~y~~~~~~~~~~~ 268 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLLALY 268 (458)
T ss_pred HHHHHHHHHHHHHHHHHHheec
Confidence 9999999999987554443333
No 27
>PRK11021 putative transporter; Provisional
Probab=99.52 E-value=4.7e-10 Score=112.69 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHH-HhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchh
Q 013326 38 SWQQMGFMLVIVFNCGYILSFSNLIL-VPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMY 116 (445)
Q Consensus 38 s~~~a~~~l~~~~iG~GiLs~lP~af-~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~ 116 (445)
+.|+++...+++++|+|++. +|... ++.|- ..+...++.++..........|.....++ .-....-.++.+||...
T Consensus 2 g~~~~~~l~~g~~IGsGif~-~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFA-VPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLG 78 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHH-hHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhH
Confidence 68999999999999999999 76554 44454 45666666666666666667775443312 22344568889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHH
Q 013326 117 YYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVL 196 (445)
Q Consensus 117 ~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~ 196 (445)
++..............+........+..+++. .... .....+.....+-+. ..+..+...+++....+..+.
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~l-n~~Gv~~~~~~~~~~~~~~~~--- 150 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---SSWQ-LLLAELLTLALLWLL-NLRGASSSANLQTVIALLIVA--- 150 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---CCch-HHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH---
Confidence 87777665543333333333344455444421 1111 111111112222233 566666666666544332221
Q ss_pred HHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHH
Q 013326 197 ILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYG 275 (445)
Q Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~ 275 (445)
+.. .....+... ..+.+..+....++.++..++....|+| |.......-+|+|||+| +++|++..+..++.++|++
T Consensus 151 i~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k-~iPrAi~~~~~~~~~lYil 227 (410)
T PRK11021 151 LVV-AIWWAGDIK-PADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER-DFPRALMIGLLLAGLVYWA 227 (410)
T ss_pred HHH-HHHHHcCCc-hhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHH
Confidence 111 111111111 1111111111223456778889999999 99999999999999986 6999999999999999998
Q ss_pred HHhH
Q 013326 276 VTII 279 (445)
Q Consensus 276 ~g~~ 279 (445)
....
T Consensus 228 ~~~~ 231 (410)
T PRK11021 228 CTVV 231 (410)
T ss_pred HHHH
Confidence 7655
No 28
>PRK15049 L-asparagine permease; Provisional
Probab=99.51 E-value=2.2e-10 Score=117.58 Aligned_cols=355 Identities=13% Similarity=0.082 Sum_probs=185.7
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNL-ILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
+.+|+.+.++.....++.++|+|++. .|. +.+++|- .+++..++.+++.......+.|..... ++.-...+-+++.
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~-~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~-P~aGg~y~y~~~~ 101 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFL-GAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHR-PSSGSFVSYAREF 101 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHH-hhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Confidence 35788999999999999999999998 765 7778886 356667777777777777777754433 2233455678999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHH-HHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISG-LAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~-~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
+|++..+++.....+........-....+..+... +.++ .. ..|..... .+++-.. ..+..+....+......
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~--~~--~~~~~~~~~~~l~~~i-N~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG--GV--PQWVFALAALTIVGTM-NMIGVKWFAEMEFWFAL 175 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC--CC--cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99988888777766654333333233333333221 1111 11 22322222 2222222 44455555555544332
Q ss_pred HHHHHHHHHHHH---HHHcCCCC--CCcccc---c-cCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchH
Q 013326 190 ITFTYVLILLVI---LVRDGTSN--KSRDYE---I-QGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 190 ~~~~~~~i~~~~---~~~~~~~~--~~~~~~---~-~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~ 259 (445)
..+..++..++. ....+... ...... . .+..+..+..++.++....|+| |...+...-.|+|||+| +.+
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r-~iP 254 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT-MVP 254 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh-HHH
Confidence 222221111111 11111111 000000 0 0011123344555667789999 99999999999999987 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCccc----cccc---cccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhh
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYGSSVS----VYLP---EQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTK 332 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~----~~il---~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~ 332 (445)
|++..++....++|+..........+.+.. ++.. .... ..+...+.++..++..+.+..-.....-+.+...
T Consensus 255 rAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~ 333 (499)
T PRK15049 255 KAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSM 333 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888898876655444442211 1111 1111 1223344444444444444322222222333222
Q ss_pred hcccc-ccccc---ccchHHHHH-HHHHHHHHHHHHHHhccC--hHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 333 LLVLE-ESMFS---RENIKRRFF-VRGVIFTANIFVAAAFPF--LGDFINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 333 ~~~~~-~~~~~---~~~~~~~~~-~~~~~~~~~~~lA~~~p~--~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
-++.. .+.++ ++..+.+.+ ...++.++..++....|+ ++.++++.+ .+..+.+++|++.+++.||
T Consensus 334 Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 334 AMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 21100 00111 112222222 222222222222223332 555666655 4567899999999988865
No 29
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.50 E-value=4.8e-11 Score=117.75 Aligned_cols=335 Identities=13% Similarity=0.174 Sum_probs=194.0
Q ss_pred CCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccc
Q 013326 35 GHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGRE 114 (445)
Q Consensus 35 ~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~ 114 (445)
+|.|.+|....++++++|+|++. +|...++.+--.+.+..++.++......+.+.+..+..++ .+..|..++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~-~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLT-LPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE--KNFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHh-hhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhhHH
Confidence 36788999999999999999999 9998766443345556666677777777777776554422 47889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH-HHHHHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 013326 115 MYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYIL-ISGLAFFIFANLVPTMSAIRRWLAVSFIITFT 193 (445)
Q Consensus 115 g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~ 193 (445)
..++............+.......++.++.... ++ ...|.. +..+++.... ..+.++...+++.+-....+.
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~----tp~~~~~l~~l~~~~~~-~~~Gi~~i~r~~~i~~~~~i~ 150 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLL--PR----TPIIVIIILIIIVSIYI-VRKGIEVLLRTAEILLIIFLI 150 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC----CCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHH
Confidence 999888877777776666666666666654431 11 122322 2222222223 456777777777655544333
Q ss_pred H-HHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHH-HHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHH
Q 013326 194 Y-VLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAM-SAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGL 270 (445)
Q Consensus 194 ~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~ 270 (445)
. +++.......+. +...-.+..+.+ ..+...+. ....++| +...+.....++|+|++ .+|+...+..++.
T Consensus 151 ~~~~il~~~~~~~~--~~~~l~P~~~~g---~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~--~~k~~~~~~~~~~ 223 (359)
T TIGR00912 151 LFILVLILLAPKLG--NIKNLLPVLENG---LSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKK--IKKSIIKAIIIGV 223 (359)
T ss_pred HHHHHHHHHhcccc--cHHHccCccccC---cHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhh--hHHHHHHHHHHHH
Confidence 2 111211111111 100011111112 23444333 3678899 88888888888998765 8999999999999
Q ss_pred HHHHHHHhHHHhhcCCccccc----cc---cccCCccHHH---HHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccccccc
Q 013326 271 LFYYGVTIIGYWAYGSSVSVY----LP---EQIGGAKWIK---VFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESM 340 (445)
Q Consensus 271 ~~y~~~g~~gy~~fG~~~~~~----il---~~~~~~~~~~---~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~ 340 (445)
++|...-......+|.+.-++ .. ....-.+... .+.-..-......+..++.+.....+++.++.|+
T Consensus 224 ~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~--- 300 (359)
T TIGR00912 224 LLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK--- 300 (359)
T ss_pred HHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---
Confidence 999999888888888643221 11 1111111211 1222222233444455555566677777776643
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhccC-hHH---HHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 341 FSRENIKRRFFVRGVIFTANIFVAAAFPF-LGD---FINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lA~~~p~-~~~---i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
. +....-... ..+.++ ..|| ... ..+..+ ..+....+++|.++.+...-
T Consensus 301 ----~--~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~i 353 (359)
T TIGR00912 301 ----Y--SILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKI 353 (359)
T ss_pred ----c--chhHHHHHH--HHHHHH-HccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 0 112222221 223333 3565 332 222223 23356777889988776653
No 30
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.49 E-value=9.8e-11 Score=118.92 Aligned_cols=239 Identities=10% Similarity=0.018 Sum_probs=139.1
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHHH-Hhhch-hHHHHHHHHHHHHHHHHHHHHHHhhhhcCc--ccccHHhHH
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLIL-VPLGW-KWGILCMFFLAFYSLYSQWLLSAFHFIDGK--RFIRYRDLM 107 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af-~~~G~-~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~--~~~sy~~l~ 107 (445)
+.+|+.+.+++....++.++|+|++. .|... ++.|- ...++..++.+++.........|.....++ ..+.| .
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~-~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~ 80 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFV-SVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---L 80 (445)
T ss_pred cccccccHHHHHHHHHHhheechhcc-chHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---H
Confidence 45688999999999999999999999 88764 44553 234445555566666666666664433211 13455 5
Q ss_pred HHhcccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHH
Q 013326 108 GYLYGREMYYYTWAIQY-LTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAV 186 (445)
Q Consensus 108 ~~~~G~~g~~i~~i~~~-~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~ 186 (445)
++.+||...++.....+ .........+....++++....+ ..........+..+..+-.. ..+..+...++...
T Consensus 81 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~----~~~~~~~~~~~~~~~~~~~l-n~~gv~~~~~v~~~ 155 (445)
T PRK11357 81 KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP----IDPLLGKFIAAGLIIAFMLL-HLRSVEGGAAFQTL 155 (445)
T ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHH
Confidence 67899877776666533 22333344555666666554332 11000111111112222222 45666655555555
Q ss_pred HHHHHHHHHHHHHHHHHH--cCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHH
Q 013326 187 SFIITFTYVLILLVILVR--DGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALY 263 (445)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~ 263 (445)
.....+..+++.++..+. +..+... ..+........+.++..++....|+| |........+|+|||+| +++|++.
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iP~Ai~ 233 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAA-PTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK-TMPRALI 233 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccC-CCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc-cchHHHH
Confidence 444433322222222221 2211110 00000011112345677788899999 99999999999999986 6999999
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 013326 264 SQYTVGLLFYYGVTIIGY 281 (445)
Q Consensus 264 ~s~~~~~~~y~~~g~~gy 281 (445)
.++.++.++|++......
T Consensus 234 ~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 234 GSCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998766543
No 31
>PRK10746 putative transport protein YifK; Provisional
Probab=99.48 E-value=1.3e-09 Score=110.93 Aligned_cols=358 Identities=12% Similarity=0.030 Sum_probs=193.2
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhhhhhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYILSFSN-LILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGY 109 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP-~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~ 109 (445)
++.+|+.+.++..+..+++++|+|++. .| .+.+.+|. ..++..++.+++.......+.|..... ++.-++.+-+++
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~-~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-P~sGg~~~y~~~ 82 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFM-GAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-PVTGSFAVYAHR 82 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHH-HhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHH
Confidence 345688999999999999999999999 64 55666776 345666666777777777777754333 223456678999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 110 LYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 110 ~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
.+||...+++.....+.....+.+.....+.+++.+.+. .....+..+.. .++-.. ..+..+....+......
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-----~~~~~~~~~~~-~~~~~l-N~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-----MAQWIPALIAV-ALVALA-NLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CchHHHHHHHH-HHHHHH-HHHhHHHHHHHHHHHHH
Confidence 999988888888887776666666666667776665431 22223333222 222222 44444544444333222
Q ss_pred HHHHH----HHHHHHHHHHc-CCCCCC---cccccc-CCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchH
Q 013326 190 ITFTY----VLILLVILVRD-GTSNKS---RDYEIQ-GSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 190 ~~~~~----~~i~~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~ 259 (445)
..+.. +++.+...... +...+. .+.... +....++..+..++....|+| |...+...-.|+|||+| +++
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k-~iP 234 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQV-TLR 234 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh-HHH
Confidence 22111 11111111111 111110 111000 011123456778889999999 99999999999999986 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCccc----cccc---cccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhh
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYGSSVS----VYLP---EQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTK 332 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~----~~il---~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~ 332 (445)
|++..+.....++|+..........+.+.. ++.. .+... .....+.+....+..+.+.--.....-+.+...
T Consensus 235 ~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~ 313 (461)
T PRK10746 235 SAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL 313 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888765554444332211 1111 11111 122233444444444443322222222332222
Q ss_pred hccccc-ccc---cccchHHHHH-HHHHHHHHHHHHHHhccChHHHHHHhhhhhh--hhHHHHHHHHHHHHHhcc
Q 013326 333 LLVLEE-SMF---SRENIKRRFF-VRGVIFTANIFVAAAFPFLGDFINVIGSFSL--IPLTFVFPSMVFIKAKAK 400 (445)
Q Consensus 333 ~~~~~~-~~~---~~~~~~~~~~-~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~--~~l~filP~l~~~~~~~~ 400 (445)
-+++.- +.+ +++..+.+.+ ......++...+....|+-+.+++..-++++ ..+.++++++.+++.+|+
T Consensus 314 a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 314 AKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211000 001 1111222222 2222222233344456655555554443332 478888899888888764
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.48 E-value=1.4e-10 Score=125.97 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=156.7
Q ss_pred ccCCChHHHHHHHH-HHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhh-cCcccccHHhHHHHh
Q 013326 33 TVGHDSWQQMGFML-VIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFI-DGKRFIRYRDLMGYL 110 (445)
Q Consensus 33 ~~~~~s~~~a~~~l-~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~-~~~~~~sy~~l~~~~ 110 (445)
..++.+++++++.- +.+++|+|++--+++...++|...+.+..++.++++..+..-+.+.... ..+.--.| ...++.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y-~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAY-YLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHH
Confidence 45788999999888 9999999998746888889998878888888899999999888886543 11111233 457888
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCcc-hhHHHHHHHHHHHHhhhhCCCcchhhHHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSD----SPVR-LQIYILISGLAFFIFANLVPTMSAIRRWLA 185 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~----~~~~-~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~ 185 (445)
+|+.....+.++.++.+..++..|.+..++++..++..... .... .+.+.++. ++++.+. .....+..+++..
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~-l~ll~~I-n~~Gvk~~ak~q~ 230 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVT-VVVLLGI-SFAGMEWENKAQV 230 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHH-HHHHHHH-HHhhHHHHHHHHH
Confidence 99988888888888888888999999999999888753210 0111 12222222 2222222 3444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC---cc-----cccc-CCccchH-HHHHHHHHHHHHHh-cccchhhhhccccccc
Q 013326 186 VSFIITFTYVLILLVILVRDGTSNKS---RD-----YEIQ-GSKTDKI-YNAIGAMSAIIVAN-AAGMIPEMQSTLRQPA 254 (445)
Q Consensus 186 ~~~~~~~~~~~i~~~~~~~~~~~~~~---~~-----~~~~-~~~~~~~-~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~ 254 (445)
+-++..++.++..++..+....+.+. .. +... .+...+. ..++..+++++.|| |......+-.|+|||+
T Consensus 231 vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~ 310 (953)
T TIGR00930 231 LFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQ 310 (953)
T ss_pred HHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 43333222222221111111100000 00 0000 0011111 12566778888899 9999999999999998
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHH
Q 013326 255 VMNMRKALYSQYTVGLLFYYGVTIIG 280 (445)
Q Consensus 255 ~~~~~~~~~~s~~~~~~~y~~~g~~g 280 (445)
+ .+++++..++.+++++|+++.+.-
T Consensus 311 r-~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 311 K-AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 699999999999999999987643
No 33
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.48 E-value=2.2e-10 Score=116.22 Aligned_cols=238 Identities=11% Similarity=-0.003 Sum_probs=145.8
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhc
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLY 111 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~ 111 (445)
+.+|+.+.++.....++.++|..... .+...++.|+..-+...++.+++.......+.|......+ .-....-+++.+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~~~~ 81 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAG-WNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFARRAF 81 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchh-HhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHh
Confidence 35688999999999999999955555 6888999998644444455555555555556664433212 223445678999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 112 GREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 112 G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
||...++......+.......++....++++..+++.. ....+.+++ ..++-+. ..+..+..+++.....+..
T Consensus 82 G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-----~~~~~~~~~-~~~~~~l-n~~g~~~~~~i~~~~~~~~ 154 (442)
T TIGR00908 82 GPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-----PGWLAALVF-YIVFIGI-NILGVGEAAKLEFVVTAVA 154 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----chhHHHHHH-HHHHHHH-HHHHHHHHHhHHHHHHHHH
Confidence 99988888888887777777788888888887776422 111121111 1222222 4455555555554443333
Q ss_pred HHHHHHHHHHHHHcCCCCC--Cccc-cccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHH
Q 013326 192 FTYVLILLVILVRDGTSNK--SRDY-EIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYT 267 (445)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~ 267 (445)
+..+++.+.....+....+ ..+. +..+.....+..+..++....|+| |.......-+|+|||+| +.+|++..+..
T Consensus 155 ~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iprai~~s~~ 233 (442)
T TIGR00908 155 IIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR-DIPRGLIGAIL 233 (442)
T ss_pred HHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccCHHHHHHHH
Confidence 2221111111111110000 0000 001111223346677788889999 99999999999999986 69999999999
Q ss_pred HHHHHHHHHHhH
Q 013326 268 VGLLFYYGVTII 279 (445)
Q Consensus 268 ~~~~~y~~~g~~ 279 (445)
++..+|+..-..
T Consensus 234 ~~~~~~~~~~~~ 245 (442)
T TIGR00908 234 TLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHH
Confidence 888888866443
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.48 E-value=4.3e-10 Score=115.48 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=140.3
Q ss_pred CCCCcccccCCChHHHHHHHHHHhhhhhhhhhhhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHH
Q 013326 26 SGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNL-ILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYR 104 (445)
Q Consensus 26 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~ 104 (445)
...|+.+.+|+.+.++.....+++++|+|++. .|. +.++.|....++..++.+++.......+.|.....+ +.-...
T Consensus 6 ~~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~-~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P-~sGg~y 83 (489)
T PRK10836 6 KTTEAPGLRRELKARHLTMIAIGGSIGTGLFV-ASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMP-VSGSFA 83 (489)
T ss_pred ccCCcccccccCcHHHHHHHHHhhhhhhhhhH-hhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHH
Confidence 33444557789999999999999999999999 885 777778644577777777887777777788544432 223444
Q ss_pred hHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHH
Q 013326 105 DLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARS-LKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRW 183 (445)
Q Consensus 105 ~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~ 183 (445)
+-+++.+|+...+++.....+. +..+.+.....++. ++.+.+ + .....+..+. ++++-.. ..+..+..+.+
T Consensus 84 ~y~~~~~g~~~gf~~Gw~~~~~-~~~~~a~~~~a~~~~~~~~~~---~--~~~~~~~~~~-~~~~~~l-N~~gv~~~~~~ 155 (489)
T PRK10836 84 TYGQNYVEEGFGFALGWNYWYN-WAVTIAVDLVAAQLVMSWWFP---D--TPGWIWSALF-LGVIFLL-NYISVRGFGEA 155 (489)
T ss_pred HHHHHHcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCC---C--CchHHHHHHH-HHHHHHH-HHHcchhhhhh
Confidence 5577888887777776665543 33333322222222 222221 1 1111222222 2222223 44444444443
Q ss_pred HHHHHHHHHHH----HHHHHHHH--HHcCCCC-CCccccccCCc-cchHHHHHHHHHHHHHHh-cccchhhhhccccccc
Q 013326 184 LAVSFIITFTY----VLILLVIL--VRDGTSN-KSRDYEIQGSK-TDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPA 254 (445)
Q Consensus 184 s~~~~~~~~~~----~~i~~~~~--~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~ 254 (445)
.....+..+.. +++.+... ..+..+. ...+....+.+ ...+..+........|+| |.......-.|+|||+
T Consensus 156 ~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~ 235 (489)
T PRK10836 156 EYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH
Confidence 32222221111 11111111 1111110 00111100011 122334444555667999 9999999999999998
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHhhc
Q 013326 255 VMNMRKALYSQYTVGLLFYYGVTIIGYWAY 284 (445)
Q Consensus 255 ~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f 284 (445)
| +.+|++..++.....+|++....-....
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 6 6999999999999999998765544443
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.46 E-value=8.9e-10 Score=112.10 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=143.8
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLI-LVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
+.+|+.+.++..+..+++++|+|++. .|-. .+++|- ..++..++.+++.......+.|..... +..-++.+-+++.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~-~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~-P~aGg~y~~~~~~ 85 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFL-GSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE-PVAGSFSHFAYKY 85 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHH-hhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 46789999999999999999999988 7655 455564 345555666666666666666754332 1223455667889
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
+||...+++.....+.....+.+.....++.++.+.+. .....+..++. .+.-.. .....+....+.......
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~~~i~~-~~~~~l-N~~gv~~~~~~~~~~~~i 158 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-----IPTWVSAAVFF-VVINAI-NLTNVKVFGEMEFWFAII 158 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----CcHHHHHHHHH-HHHHHH-HHHhHHHHHHHHHHHHHH
Confidence 99999999999888888777777777777777665431 22222322222 122222 344445555555444333
Q ss_pred HHHHHHHHHH---HHHHcCCCCC---Cccc-cccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHH
Q 013326 191 TFTYVLILLV---ILVRDGTSNK---SRDY-EIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKAL 262 (445)
Q Consensus 191 ~~~~~~i~~~---~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~ 262 (445)
.+..++..++ ..+..+...+ ..+. +..+..++.+..+..+++...|+| |........+|+|||+| +.+|++
T Consensus 159 ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r-~iPrAi 237 (456)
T PRK10238 159 KVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ-SIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh-HHHHHH
Confidence 3222211111 1111111111 0110 111111223445667778899999 99999999999999986 699999
Q ss_pred HHHHHHHHHHHHHH
Q 013326 263 YSQYTVGLLFYYGV 276 (445)
Q Consensus 263 ~~s~~~~~~~y~~~ 276 (445)
..+.....++|...
T Consensus 238 ~~~~~~i~~~y~~~ 251 (456)
T PRK10238 238 NQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777777654
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.46 E-value=2.1e-09 Score=109.51 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=144.9
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhhhhhHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYILSFSNLI-LVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGY 109 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~ 109 (445)
++.+|+.+.++.....+++++|+|++. +|.. .+.+|-. .++..++.+++.......+.|....... .-...+.+++
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~-~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~ 81 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFY-GSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQE 81 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 345688999999999999999999999 7655 6666763 5667777777777777777775533211 2334456889
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 110 LYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 110 ~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
.+||...+++.....+.....+.......+..++.+.+. .....+.+.. +++.-.. ..+..+....+......
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~l~~~l-n~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-----VPHWIWVLSV-VLIICAV-NLMSVKVFGELEFWFSF 154 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CChHHHHHHH-HHHHHHH-HHccchhHHHHHHHHHH
Confidence 999998888888776665555555445555555554431 1122232222 2222223 55555655555544333
Q ss_pred HHHHHHHHHHH----HHHHcCC-CCCCc--c--ccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchH
Q 013326 190 ITFTYVLILLV----ILVRDGT-SNKSR--D--YEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 190 ~~~~~~~i~~~----~~~~~~~-~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~ 259 (445)
..+..++..+. ....... ..++. + .+..+...+.+..+..++....|+| |........+|+|||+| +.+
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k-~iP 233 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK-SIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-HHH
Confidence 32221111111 1111111 00100 0 1100011123346677888999999 99999999999999987 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 013326 260 KALYSQYTVGLLFYYGVTIIG 280 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~g 280 (445)
|++..+......+|......-
T Consensus 234 rAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988887888887765443
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.44 E-value=1.2e-09 Score=111.91 Aligned_cols=238 Identities=10% Similarity=-0.006 Sum_probs=150.1
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR 113 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~ 113 (445)
+|+.+.++.....++.++|+|++.....+.+++|....+...++.+++.......+.|......+..-.|.+.+++.+|+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 36789999999999999999999834567777775433555666666666666667775444322233677889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHH
Q 013326 114 EMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFT 193 (445)
Q Consensus 114 ~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~ 193 (445)
...+++.....+.....+.+.....+..++.+.+ ......|..+.. ++.-+. ..+..+..++++.......+.
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~i-n~~gv~~~~~~~~~~~~~ki~ 153 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-----KVNPAVWIAIFY-VFIVII-NLFGVKGYGEAEFWFSSIKIL 153 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHH-HHHHHH-HHhcchHHHHHHHHHHHHHHH
Confidence 9998888888777776667777777776654432 222233433222 222233 556666666655444322221
Q ss_pred HHH---HHHHHHHHcCCCCCC-c---cc-cccCCc----cchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHH
Q 013326 194 YVL---ILLVILVRDGTSNKS-R---DY-EIQGSK----TDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRK 260 (445)
Q Consensus 194 ~~~---i~~~~~~~~~~~~~~-~---~~-~~~~~~----~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~ 260 (445)
.++ +.............. . +. +..+.+ ...+.++..++....|+| |......+-+|+|||+| +.+|
T Consensus 154 ~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~iPr 232 (478)
T TIGR00913 154 AIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRK-SIPR 232 (478)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh-HHHH
Confidence 111 111111111111100 0 00 000001 012456777888899999 99999999999999986 6999
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 013326 261 ALYSQYTVGLLFYYGVTII 279 (445)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~ 279 (445)
++..+..+..++|++....
T Consensus 233 ai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 233 AAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987544
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.40 E-value=1.4e-09 Score=109.78 Aligned_cols=348 Identities=11% Similarity=0.028 Sum_probs=195.3
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHhhhhcCcccccHHhHHHHhcccch
Q 013326 37 DSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYS-LYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREM 115 (445)
Q Consensus 37 ~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g 115 (445)
.|+|++....++.++|+|+.. .| ..++.|.. .++..++.+.+. ........|..+.. ++.-...+-.++.+||..
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~-~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~-p~~GG~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFF-SP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAY-PSAGGIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTT-HH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTT-TSSTTHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC-CCcCeeeehhhhcccccc
Confidence 378999999999999999999 99 77777875 444444444443 34445555643322 223445577899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH--HHHHHHHHhhhhCCCcchhhHHHHHHHHHHH-
Q 013326 116 YYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYIL--ISGLAFFIFANLVPTMSAIRRWLAVSFIITF- 192 (445)
Q Consensus 116 ~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~--i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~- 192 (445)
.++......+.......++.....+.+...+... ...+...... +..+...... ..+..+..++++.......+
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~i~ 153 (426)
T PF13520_consen 77 GFIVGWLYWVAYILSLASVASSFASYLLSLFGPD--LNPSPWPQFLIAIILILLFTLL-NLLGIKLSGKIQNILTVIKIV 153 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGG--GTCSHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHH
T ss_pred hhcccceeEEEeeccccccccchhhhhhhccccc--cccccchheeeeecccccceEe-eechhhhhhhhhhhhhhhhhh
Confidence 9999998888888888888888888876665311 1111112222 2222233333 56777777777766665555
Q ss_pred HHHHHHHHHHHHcCCCCCCc-----cccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHH
Q 013326 193 TYVLILLVILVRDGTSNKSR-----DYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQY 266 (445)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~ 266 (445)
..+++.+...+.....+... ..+..+... ...+.+++..+|+| |....+.+.+|+|| + +.+|++..+.
T Consensus 154 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k--~ip~ai~~~~ 227 (426)
T PF13520_consen 154 IPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGW---PGFLAGFSVAFFAFSGFEAIASLAEENKN-K--TIPRAIIISI 227 (426)
T ss_dssp HHHHHHHHHHHHSTTCCHHH----SHSCSSCSSS---SHHHHHHHHHGGGGTTTTHHHHGGGGSSS-H--HHHHHHHHHH
T ss_pred hhhhhheeEEEeeecccccccccccccccCCccc---cchhhHHHHHHhhcccccccccccccccc-h--hheeecccch
Confidence 23333333344433221110 011111111 13567788999999 99999999999887 3 4999999999
Q ss_pred HHHHHHHHHHHhHHHhhcCCccc---cccc---ccc-C--CccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccc
Q 013326 267 TVGLLFYYGVTIIGYWAYGSSVS---VYLP---EQI-G--GAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLE 337 (445)
Q Consensus 267 ~~~~~~y~~~g~~gy~~fG~~~~---~~il---~~~-~--~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~ 337 (445)
.++.++|.+....-....+++.. ++.. ..+ . ..++...+..+...+..+.+........-+.+...-+++.
T Consensus 228 ~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 307 (426)
T PF13520_consen 228 IIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGV 307 (426)
T ss_dssp HHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccc
Confidence 99999999987777766665321 1211 011 0 1134555555555555555554444444344443333210
Q ss_pred -cccccccchHHHHHHH--HHHHHHHHHHHH---hcc--ChHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 013326 338 -ESMFSRENIKRRFFVR--GVIFTANIFVAA---AFP--FLGDFINVIGSFSLIPLTFVFPSMVFIKAKAK 400 (445)
Q Consensus 338 -~~~~~~~~~~~~~~~~--~~~~~~~~~lA~---~~p--~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~ 400 (445)
.+.+++.+ +.+.-.+ ....+.+.++.. ..| ++..+.+... ....+.++++.+.+++.+++
T Consensus 308 lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 375 (426)
T PF13520_consen 308 LPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRRK 375 (426)
T ss_dssp SSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHHH
T ss_pred hhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 01221112 1111111 122222222222 233 3455555443 33466777777666666554
No 39
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.40 E-value=1e-09 Score=113.11 Aligned_cols=247 Identities=10% Similarity=-0.018 Sum_probs=142.5
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhhhhhHHH-HHhhchh-HHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYILSFSNLI-LVPLGWK-WGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMG 108 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~a-f~~~G~~-~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~ 108 (445)
++.+|+.+.++.....+++++|+|++. .|.. .+++|-. ...+..++.+++.........|.....++ .-....-.+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~-~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFV-SPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEee-cHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhHH
Confidence 345788999999999999999999999 8765 5556643 12233445555555555666665433211 112334467
Q ss_pred HhcccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHhhcCCCCcchhHHHHH--HHHHHHHhhhhCCCcchhhHHH
Q 013326 109 YLYGREMYYYTWAIQYL-TLLVANIGFILLAARSLKE-INMVSSDSPVRLQIYILI--SGLAFFIFANLVPTMSAIRRWL 184 (445)
Q Consensus 109 ~~~G~~g~~i~~i~~~~-~~~g~~i~y~i~~~~~l~~-l~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~~l~~l~~~s 184 (445)
+.+||...++....... ...+.+..+....++++.. +.+ +.........++ ..+.+.-.. ..+..+...+++
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~---~~~~~~~~~~~i~~~~i~~~~~l-n~~Gvk~~~~~~ 191 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFP---DCEVPEWAIRLVAVLCVLLLTLV-NCLSVKWATRVQ 191 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 78999777766544332 2233444555555555422 322 111111111111 112222233 556667777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCCCC--ccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchH
Q 013326 185 AVSFIITFTYVLILLVILVRD--GTSNKS--RDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~ 259 (445)
.......+..++..++.++.. ..+... .+.... ....+..++..++....|+| |......+.+|+|||+| +.+
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r-~iP 269 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFE-GTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR-TLP 269 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccC-CCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh-hhH
Confidence 665555443332222222221 111100 111111 11122456777888999999 99999999999999976 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcC
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG 285 (445)
|++..+..+..++|++....-....+
T Consensus 270 rAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 270 IAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998655544433
No 40
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.35 E-value=4.6e-10 Score=110.71 Aligned_cols=357 Identities=11% Similarity=0.039 Sum_probs=206.3
Q ss_pred cccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc--cccHHh
Q 013326 30 SAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLG--WKWGILCMFFLAFYSLYSQWLLSAFHFIDGKR--FIRYRD 105 (445)
Q Consensus 30 ~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G--~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~--~~sy~~ 105 (445)
....+||.+.+.++..++++++|+|++. .|....+.+ ..++.+.-+++++++......-.|.-..-++. ...|
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFv-sp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ay-- 83 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFV-SPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAY-- 83 (479)
T ss_pred cccccceeeeecceeEEEEeeEeccccc-CcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhh--
Confidence 3445688999999999999999999999 998877665 44555566667788887777776654332121 2334
Q ss_pred HHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHH
Q 013326 106 LMGYLYGR-EMYYYTWAIQYLTLLVANIGFILLAARS-LKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRW 183 (445)
Q Consensus 106 l~~~~~G~-~g~~i~~i~~~~~~~g~~i~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~ 183 (445)
..++||+ ++-...++...+..-..+..+.+..+++ +++.++ .+...+..--. .+.+++.+. ...|....++.
T Consensus 84 -i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp---~c~~p~~~~~l-la~~~l~~l-t~~n~~~V~~a 157 (479)
T KOG1287|consen 84 -ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP---LCDVPRVASKL-LAAALLVLL-TLINSFSVKWA 157 (479)
T ss_pred -HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC---CCCCchHHHHH-HHHHHHHHH-HHHhhhhhhHH
Confidence 5566777 5555555555555555667888888887 666664 23333322222 233333333 45555555555
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHcCCCCC---CccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhccccccccc
Q 013326 184 LAVSF---IITFTYVLILLVILVRDGTSNK---SRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVM 256 (445)
Q Consensus 184 s~~~~---~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~ 256 (445)
+.+-. ++-+..+.++.+.+++...... ..+.+..+++ .+..+...++-.-.||| |-+..=.+..|+|||+|
T Consensus 158 ~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k- 235 (479)
T KOG1287|consen 158 TRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR- 235 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcCccc-
Confidence 54443 3334334344444444321111 1111122222 23356777888899999 99999999999999987
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccC------C---ccHHHHHHHHHHHHHHhhhhHhhhhhHHH
Q 013326 257 NMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIG------G---AKWIKVFVNAAVFLQSLVSQHVFISPVYE 327 (445)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~------~---~~~~~~~~~~~~~~~~~~s~~l~~~p~~~ 327 (445)
++|++...|+.++++.|+++=+..+.+- +.+.++.+-. + .++. -+.-++..++.+.+.--.....-+
T Consensus 236 tLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 236 TLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred cchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7999999999999999998876665543 2233322211 0 1111 223333334333333211111111
Q ss_pred HHHhhhcccccccc----cccchHHHH-HHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccc
Q 013326 328 TLDTKLLVLEESMF----SRENIKRRF-FVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKAS 402 (445)
Q Consensus 328 ~l~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~ 402 (445)
.+...- +|++. +..+.+... ....+......++....+|+..+++..+=.......+.+=+++++|.++++.
T Consensus 312 ~~~~~a---reG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 312 LFYAGA---REGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHH---HccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 111111 11111 111111111 1223333444455556778999999999877778888889999999987664
Q ss_pred ch
Q 013326 403 TI 404 (445)
Q Consensus 403 ~~ 404 (445)
++
T Consensus 389 ~r 390 (479)
T KOG1287|consen 389 PR 390 (479)
T ss_pred CC
Confidence 44
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.31 E-value=1.5e-08 Score=102.95 Aligned_cols=340 Identities=9% Similarity=0.026 Sum_probs=180.6
Q ss_pred HHHhhhhhhhhhhhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHHHHHHHH
Q 013326 46 LVIVFNCGYILSFSNL-ILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQY 124 (445)
Q Consensus 46 l~~~~iG~GiLs~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i~~i~~~ 124 (445)
.+++++|+|++. .|. +.++.|. ..++..++.+++.........|..... ++.-...+-+++.+||+..+++.....
T Consensus 3 ~ig~~IGsGif~-~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~-P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 3 SIAGVIGASLFV-GSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT-PDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eecchhHhHHHH-HhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 367899999999 776 7778886 367777777887777777777754433 122345577889999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH-
Q 013326 125 LTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILV- 203 (445)
Q Consensus 125 ~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~- 203 (445)
+.....+.......+..++...+ ......+..++ +.++-+. ..+..+..+.+........+..++..++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-l~~~~~l-N~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~ 152 (446)
T PRK10197 80 WFWVLVIPLEANIAAMILHSWVP-----GIPIWLFSLVI-TLALTGS-NLLSVKNYGEFEFWLALCKVIAILAFIFLGAV 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-----cCcHHHHHHHH-HHHHHHH-HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444444444443321 11111121211 2222233 4555555555554444333322222222212
Q ss_pred -HcCC-CCCC-c---cccc-cCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHH
Q 013326 204 -RDGT-SNKS-R---DYEI-QGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYG 275 (445)
Q Consensus 204 -~~~~-~~~~-~---~~~~-~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~ 275 (445)
..+. +..+ . +... .+..++.+.++..++....|+| |.........|+|||+| +.+|++..++....++|+.
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r-~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 153 AISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK-HIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHH
Confidence 1211 1100 0 0000 0001223457788889999999 99999999999999986 6999999999999999998
Q ss_pred HHhHHHhhcCCcccc--------ccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccc-ccccc---c
Q 013326 276 VTIIGYWAYGSSVSV--------YLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLE-ESMFS---R 343 (445)
Q Consensus 276 ~g~~gy~~fG~~~~~--------~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~-~~~~~---~ 343 (445)
....-......+..+ ........ .+...+.+....++.+.+..-.....-+.+...-+++. .+.++ +
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~ 310 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR 310 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc
Confidence 665533332222111 11222221 23344445544454444443333333233322221100 00111 1
Q ss_pred cchHHHHHHHH-HHHHHHHHHHHhcc--ChHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 344 ENIKRRFFVRG-VIFTANIFVAAAFP--FLGDFINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 344 ~~~~~~~~~~~-~~~~~~~~lA~~~p--~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
+....+...-. ...++..+.....| .++.++++.+... .+.++++++.+++.+|
T Consensus 311 ~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 311 SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 11222222221 12222222222223 3677777777544 4888888888888765
No 42
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.27 E-value=3.6e-08 Score=100.70 Aligned_cols=252 Identities=11% Similarity=0.035 Sum_probs=158.6
Q ss_pred cccccCCChHHH-HHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHH
Q 013326 30 SAHTVGHDSWQQ-MGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMG 108 (445)
Q Consensus 30 ~~~~~~~~s~~~-a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~ 108 (445)
++..+++.+.++ ......+.++|.|++. +|......+ .......++.+++.........+..... ++.-.+.+-.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~-~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~-p~~GG~y~~~~ 83 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFA-LPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAI-PSAGGAYAYAK 83 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHh-hhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCeeeehh
Confidence 344456677777 8888999999999999 988888775 1122222333333444444445543321 11223445589
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH--HHHHHHhhhhCCCcchhhHHHHH
Q 013326 109 YLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILIS--GLAFFIFANLVPTMSAIRRWLAV 186 (445)
Q Consensus 109 ~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~--~~~~~pl~~~~~~l~~l~~~s~~ 186 (445)
+.+||+..+++.....+.......+.....+..+..+.+...........+..+. ....+-+. ..+..+...++...
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-n~~G~~~~~~~~~~ 162 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLL-NLRGIKASAKINSI 162 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 9999988888888888888888888888888877777653100011101222221 12222233 56677777777776
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHH
Q 013326 187 SFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQ 265 (445)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s 265 (445)
..+..+...++.............................+..++....++| |.....+..+|+|||+| +.+|++..+
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r-~ip~aii~~ 241 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR-TIPRAIILS 241 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc-cccHHHHHH
Confidence 6666655444444444444332211111100001112235677788899999 99999999999999876 499999999
Q ss_pred HHHHHHHHHHHHhHHHhhcCC
Q 013326 266 YTVGLLFYYGVTIIGYWAYGS 286 (445)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fG~ 286 (445)
+..+..+|+..........++
T Consensus 242 ~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 242 LLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHhCccH
Confidence 999999999988888777775
No 43
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.22 E-value=3.5e-07 Score=93.70 Aligned_cols=252 Identities=9% Similarity=-0.079 Sum_probs=138.3
Q ss_pred ccccCCChHHHHHHHHHHhh-hhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVF-NCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGY 109 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~-iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~ 109 (445)
++.+|+.+.++.+..-++.+ +|.|+...+..+..++|- ..+...++.++........+.|....... .-....-.++
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~~~~~ 86 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQWSRR 86 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHHHHH
Confidence 34568899999998888875 899999844566667776 34455555555555566666664333211 1223345788
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCc---ch--hHHHHHHHH-HHHHhhhhCCCcch
Q 013326 110 LYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVS----SDSPV---RL--QIYILISGL-AFFIFANLVPTMSA 179 (445)
Q Consensus 110 ~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~----~~~~~---~~--~~~~~i~~~-~~~pl~~~~~~l~~ 179 (445)
.+||...+++.....+................+..+.... .+..+ .. ..+.+...+ .+.-+. ..+..+.
T Consensus 87 ~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-n~~g~k~ 165 (475)
T TIGR03428 87 MGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVI-NCIGVEW 165 (475)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHH-HHhhhhH
Confidence 8999888887777666555444444444444443332111 01111 01 112222211 222222 4455566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc--cccCCccchHHHHHHHHHHHHHHh-cccchhhhhccccccccc
Q 013326 180 IRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDY--EIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVM 256 (445)
Q Consensus 180 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~ 256 (445)
.+++..+..+..+..+++.++.........+.... ...+.+......+..+.....|+| |......+-+|+|||+|
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r- 244 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRR- 244 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcch-
Confidence 66666555444333222222222222211110000 000111111234445566678999 99999999999999987
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 013326 257 NMRKALYSQYTVGLLFYYGVTIIGYWAYGS 286 (445)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~ 286 (445)
+.+|++..+..+..++|.+.-+......++
T Consensus 245 ~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 245 VAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999988877666555544444443
No 44
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.16 E-value=6.2e-08 Score=94.46 Aligned_cols=359 Identities=10% Similarity=0.090 Sum_probs=206.3
Q ss_pred CcccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHH
Q 013326 29 TSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMG 108 (445)
Q Consensus 29 ~~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~ 108 (445)
++.+.+|+.+.++--+.-++..||+|.+-=--.+.+.+|.- -++..++.+++.+.-++.+.|...+. +...|+.+.++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~-p~~gSF~~~a~ 84 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVAN-PVSGSFSDYAR 84 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHH
Confidence 44556788999999999999999999753146777788864 35667777888888888888876554 44679999999
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH--HHhhhhCCCcchhh-HHHH
Q 013326 109 YLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAF--FIFANLVPTMSAIR-RWLA 185 (445)
Q Consensus 109 ~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~~l~~l~-~~s~ 185 (445)
+.+|++..++..-.....-..++.+=+..++.+++.+++.. .++.+.+...+++ +=+. ..|.+..+. |++.
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-----P~Wv~al~~~~l~~~~NL~-sVk~FGE~EfWfAl 158 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-----PQWVFALAAVVLLLAVNLI-SVKVFGELEFWFAL 158 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998632 2333322222111 1122 344444443 2333
Q ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCC--Ccc-ccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchH
Q 013326 186 VSFIITFTYVLILLVILVR--DGTSNK--SRD-YEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 186 ~~~~~~~~~~~i~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~ 259 (445)
.=+.+++.+++...+..+. ..+... -.+ ++..+--++++.+++.++-+.+||| +...+-.-..|-|||+| ..+
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k-~ip 237 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK-AIP 237 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh-HHH
Confidence 3333333222222222221 111111 001 1111112445678889999999999 99999888999999987 588
Q ss_pred HHHHHHHHHHHHHHHH-----HHhHHHhhcCCccccccccccCC--ccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhh
Q 013326 260 KALYSQYTVGLLFYYG-----VTIIGYWAYGSSVSVYLPEQIGG--AKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTK 332 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~-----~g~~gy~~fG~~~~~~il~~~~~--~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~ 332 (445)
|++..-..=..++|+. ..+.-+-.++++.+ +...-+.. -.+...+.|...+.+.+.++---.+..-+.+...
T Consensus 238 kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S-PFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 238 KAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS-PFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC-cHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHH
Confidence 8876555545555553 33333443433222 22222220 1122222333222222222211111122223222
Q ss_pred hcccc-cccc---cccchH-HHHHHHHHHHHHHHHHHHhccC--hHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 333 LLVLE-ESMF---SRENIK-RRFFVRGVIFTANIFVAAAFPF--LGDFINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 333 ~~~~~-~~~~---~~~~~~-~~~~~~~~~~~~~~~lA~~~p~--~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
-.+.+ .+.+ +++.-. .-.........++.++....|. |+.+.+..+... .....+=.+.|+|.+|
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~--l~vW~~I~~s~l~~rk 388 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGL--LFVWLMILLSQLKLRK 388 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 11110 0111 122222 2345667777888888889994 555555555433 3334444566778776
No 45
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.12 E-value=1.1e-07 Score=92.19 Aligned_cols=280 Identities=14% Similarity=0.117 Sum_probs=171.6
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhHHHHHhh---chhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 36 HDSWQQMGFMLVIVFNCGYILSFSNLILVPL---GWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 36 ~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~---G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
|.|..|....+..+++|.|++. +|...++. ||+. .++.+.......++..+..+.. ++.+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~-~p~~l~~~~~d~Wi~----~ll~~~~~l~~~~l~~~l~~~~--p~~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILF-LPAILAEQAGDAWIS----VLLGGLIGLLLALLIYYLLKRF--PGKTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcHHH----HHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHhC
Confidence 5688999999999999999999 99998766 4653 3333333444444444443332 24688999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHH-HHHHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILI-SGLAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i-~~~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
|+...+..+...+.........+...+|.++...-. + ...|.+. ..+++..-. ..+.++.+.+.+..-....
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp----~--TP~~~i~~~~ll~~~y~-a~~G~e~i~R~~~~~~~~~ 146 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP----E--TPIWVIILLFLLVAAYA-ARKGIEVIARVAEILFPIF 146 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Confidence 999999999888888888888888888887775421 1 1223222 222222223 4667777777554443333
Q ss_pred HHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHH
Q 013326 192 FTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGL 270 (445)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~ 270 (445)
+...+........+... +.-.+. -..+..+...+.....+.| +...+.-+...+|+|++ .+|....+..++.
T Consensus 147 ~i~~~~i~~~~~~~~~~--~~l~P~---~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~--~~k~~~~~~~~~~ 219 (320)
T PF03845_consen 147 LILLLLILLLSIPNIDW--DNLLPV---LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK--LKKSLLIAILISG 219 (320)
T ss_pred HHHHHHHHHHhcccCCH--HHeeCc---ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH--HHHHHHHHHHHHH
Confidence 32222222222222111 111111 1233456677777777888 77777778888888776 8899999999999
Q ss_pred HHHHHHHhHHHhhcCCccccccc-------cccCCccHHH---HHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccc
Q 013326 271 LFYYGVTIIGYWAYGSSVSVYLP-------EQIGGAKWIK---VFVNAAVFLQSLVSQHVFISPVYETLDTKLLVL 336 (445)
Q Consensus 271 ~~y~~~g~~gy~~fG~~~~~~il-------~~~~~~~~~~---~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~ 336 (445)
++|...-......||.+..++.. ...+-++.+. .+.-..-......+..++.+...+.+.+.++.+
T Consensus 220 ~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 220 LFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999988999999964322111 1111111211 222222233344455556566667777777764
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.08 E-value=1.8e-06 Score=88.79 Aligned_cols=249 Identities=10% Similarity=-0.051 Sum_probs=130.0
Q ss_pred cccCCChHHHHHHHHHHhhhh--hhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHH
Q 013326 32 HTVGHDSWQQMGFMLVIVFNC--GYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGY 109 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG--~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~ 109 (445)
+.+|+.+.++.+..-+.. +| .|+....+.+.++.|-..-+...++.+++.......+.|......+ .-....-+++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~~~~~ 86 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYFWSAK 86 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHHHHHH
Confidence 355778888887777774 44 6665525667777887544556666667667666667775433211 2223344566
Q ss_pred hcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC--CCcchhHHHHHHH--HHHHHhhhhCCCcchh
Q 013326 110 LYG----REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVS-SD--SPVRLQIYILISG--LAFFIFANLVPTMSAI 180 (445)
Q Consensus 110 ~~G----~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~-~~--~~~~~~~~~~i~~--~~~~pl~~~~~~l~~l 180 (445)
.+| +...+++.....+.....+.+.....++.+..+.... ++ ...+.....++.. ..++-+. ..+..+..
T Consensus 87 ~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i-n~~g~k~~ 165 (482)
T TIGR00907 87 LAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALI-NSLPTKWL 165 (482)
T ss_pred hcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHH-HHhhHhHH
Confidence 665 4555666555666666666666666666666544321 11 1111222122211 1222222 44444545
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCccc-----ccc--CCccchHHHHHHHHHHHHHHh-cccchhhhhcccc
Q 013326 181 RRWLAVSFIITFTYVLILLVILVRDGT-SNKSRDY-----EIQ--GSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLR 251 (445)
Q Consensus 181 ~~~s~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk 251 (445)
+.+.....+..+...++..+....... ..++.+. ... +..... ..+..++....|+| |.......-+|+|
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~fsf~G~e~~~~~a~E~k 244 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGG-FAFLLGLLNPAWSMTGYDGTAHMAEEIE 244 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCc-hhhhhhhhhhHHHhcCcchhhHHHHhcC
Confidence 555444333322222211111111111 1011110 000 111111 23445556677999 9999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 013326 252 QPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 252 ~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG 285 (445)
||+| +++|++..+..+..+++.+..+.-+...+
T Consensus 245 nP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 245 NPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred Chhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9976 69999999988776655444333333334
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.93 E-value=2.6e-05 Score=80.35 Aligned_cols=241 Identities=10% Similarity=0.023 Sum_probs=123.3
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHH-HHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLY-SQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~-s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
+||.+.++.....++.++|.+ . +|.++++.|.. +++..++.+++... ......|.....++..-.-..-.++.+|
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~-~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--N-SPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--c-hHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 467999999999999999976 6 89888888874 44444444433322 3344555432221101122244888899
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcC-----CCCcchhHHHHHHHH---HHHHhhhhCCCcchhhHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAAR-SLKEINMVSS-----DSPVRLQIYILISGL---AFFIFANLVPTMSAIRRW 183 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~-~l~~l~~~~~-----~~~~~~~~~~~i~~~---~~~pl~~~~~~l~~l~~~ 183 (445)
|+..++...................... ....++.... ....+......+.++ .++-.. ..|..+..+++
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~v-n~~g~~~~~~i 160 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFV-ASKGINKIAKV 160 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHH-HccchHHHHHH
Confidence 9777654433222222111110000000 0000111000 001111111111111 122233 56777777777
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHcCCC-CCCcc---cc-ccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccc
Q 013326 184 LAVSFIITFT----YVLILLVILVRDGTS-NKSRD---YE-IQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQP 253 (445)
Q Consensus 184 s~~~~~~~~~----~~~i~~~~~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p 253 (445)
+..+....+. .+++........+.. ..+.+ .. ...+++.....+..++....|+| |........+|+|||
T Consensus 161 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p 240 (496)
T PRK15238 161 TSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENP 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCC
Confidence 7654433221 111111111122211 11110 10 00011111124556677789999 999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhHH
Q 013326 254 AVMNMRKALYSQYTVGLLFYYGVTIIG 280 (445)
Q Consensus 254 ~~~~~~~~~~~s~~~~~~~y~~~g~~g 280 (445)
+| +.+|++..+.....++|.+....-
T Consensus 241 ~~-~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 241 EK-NFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred Cc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 86 699999999999999999764443
No 48
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.90 E-value=1.5e-05 Score=82.26 Aligned_cols=232 Identities=10% Similarity=0.053 Sum_probs=115.1
Q ss_pred cCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHH--HHHHHHHhhhhc--C-cccccHHhHHH
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLY--SQWLLSAFHFID--G-KRFIRYRDLMG 108 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~--s~~ll~~~~~~~--~-~~~~sy~~l~~ 108 (445)
++|.|.++-++..+.... ++-. +| .+++.|+ +.+...+++.+.+. ......|..... + .....| ++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~-~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~w---v~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYE-YP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAW---VS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHh-hH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeee---hh
Confidence 466888888877777776 4567 88 5778884 34444444433322 444555543321 1 123444 88
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchh-HHHHHHH-HHHHHhhhhCCCcchhhHHHHH
Q 013326 109 YLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQ-IYILISG-LAFFIFANLVPTMSAIRRWLAV 186 (445)
Q Consensus 109 ~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~-~~~~i~~-~~~~pl~~~~~~l~~l~~~s~~ 186 (445)
+.+|++..++.....++.......+........+..+.. .++...+.. .+.+... ...+.+. ..+..+...+++..
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~i~~l~i~~~~t~~-n~~G~k~~~~i~~i 151 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALNEDPIIKFIAALIIFWALAFS-QFGGTKRTAKIAKA 151 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhccCcHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH
Confidence 999998777765555554432222221111111222221 111111111 1111111 1222233 45555655555544
Q ss_pred HHHHHH-H--HHHHHHHHHH-HcCCCCC-CccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHH
Q 013326 187 SFIITF-T--YVLILLVILV-RDGTSNK-SRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRK 260 (445)
Q Consensus 187 ~~~~~~-~--~~~i~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~ 260 (445)
+.+... + .+++.+.... ..+.+.. +.+.....++..+ ......+..++|+| |.......-+|+|||+| +++|
T Consensus 152 ~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r-~~Pr 229 (507)
T TIGR00910 152 GFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSK-VGTLVVFVAFIGAYMGVEASASHINELENPGR-DYPL 229 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCccc-ccHHHHHHHHHHHHhcHHHHHHHHHHccCCcc-cccH
Confidence 332211 1 1111111111 1221110 1010000011111 12233444568999 99999999999999976 6999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013326 261 ALYSQYTVGLLFYYGVTI 278 (445)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~ 278 (445)
++..+..+...+|.+..+
T Consensus 230 Ai~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 230 AMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988888876443
No 49
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.89 E-value=9.5e-08 Score=97.88 Aligned_cols=365 Identities=12% Similarity=-0.015 Sum_probs=203.2
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
.+.+|+.+.+.-.+.-+++++|+|++-....+.++.|-..-++..++.+...+.+..-+.|......+..-++..-++..
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 46678999999999999999999998745888999988766777777778888888888885433222111233347788
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc--CCCCcchhHHHHHHH--HHHHHhhhhCCCcchhhHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINM--VS--SDSPVRLQIYILISG--LAFFIFANLVPTMSAIRRWL 184 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~--~~--~~~~~~~~~~~~i~~--~~~~pl~~~~~~l~~l~~~s 184 (445)
.|+-....+.....+...-.+.+-....+..++.+.. .. .....+...|..++. ++++.+. -.+-.-...+..
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~-gv~~~ge~ef~~ 184 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLF-GVLAYGEVEFSL 184 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHH-HHhhccceeehH
Confidence 8898888888888888888888888888888888760 00 001112222333321 2222222 334322232333
Q ss_pred HHHHHHHHHHHHHH-HH--HHHHcCCCCCCc--cccc-c-CCccchHHHHHHHHHHHHHHh-cccchhhhhccccccccc
Q 013326 185 AVSFIITFTYVLIL-LV--ILVRDGTSNKSR--DYEI-Q-GSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVM 256 (445)
Q Consensus 185 ~~~~~~~~~~~~i~-~~--~~~~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~ 256 (445)
...-+.+++-+++. ++ .+..+.+..+.. ++.. + .-.+..+.++...+-+..|+| |...+-..-.|-|||+|
T Consensus 185 ~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k- 263 (554)
T KOG1286|consen 185 AFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK- 263 (554)
T ss_pred HHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc-
Confidence 22222222111111 11 111111110101 1100 0 011122446677788999999 99999999999999987
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHhhcC-Cc--cccccccccC-----CccHHHH---HHHHHHHHHHhhhhHhhhhhH
Q 013326 257 NMRKALYSQYTVGLLFYYGVTIIGYWAYG-SS--VSVYLPEQIG-----GAKWIKV---FVNAAVFLQSLVSQHVFISPV 325 (445)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fG-~~--~~~~il~~~~-----~~~~~~~---~~~~~~~~~~~~s~~l~~~p~ 325 (445)
..++++..++..++.+|.+..+.-=+.-. ++ ..++....-| +..+... +.++..++.++.+.---.++.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~ 343 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAG 343 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHh
Confidence 69999999999999999987765422211 11 1111111100 1112223 677777776666654444454
Q ss_pred HHHHHhhhccccc-ccccccchHHH-HHHHHHHHHHHHHHHHhccC-----hHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 013326 326 YETLDTKLLVLEE-SMFSRENIKRR-FFVRGVIFTANIFVAAAFPF-----LGDFINVIGSFSLIPLTFVFPSMVFIKAK 398 (445)
Q Consensus 326 ~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~lA~~~p~-----~~~i~~l~Ga~~~~~l~filP~l~~~~~~ 398 (445)
-+.+..+-++... +-|.+-++..+ +....+..+...+.++.... |+.++++.|- ++.+++.+=++.|++.|
T Consensus 344 sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 344 SRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFR 421 (554)
T ss_pred HHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeee
Confidence 4444443222100 01111111122 22223333333444433332 6889999884 34666666666666665
Q ss_pred c
Q 013326 399 A 399 (445)
Q Consensus 399 ~ 399 (445)
+
T Consensus 422 ~ 422 (554)
T KOG1286|consen 422 Y 422 (554)
T ss_pred e
Confidence 4
No 50
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.88 E-value=1.4e-05 Score=79.97 Aligned_cols=359 Identities=11% Similarity=0.062 Sum_probs=211.9
Q ss_pred ccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
.+|+...+.-.+.-++..||+|.+-=.-.+.+++|-...++..++++.+.+..+.-+.|...... ..-++.+.+.+..+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sGsF~~ya~rfvd 120 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhhhhhhhcC
Confidence 56888889999999999999998643789999999998888899999999999999999665542 34468888999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhh-hhCCCcchhh-HHHHHHHHH
Q 013326 113 REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFA-NLVPTMSAIR-RWLAVSFII 190 (445)
Q Consensus 113 ~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~-~~~~~l~~l~-~~s~~~~~~ 190 (445)
+.....+....++.-.-++..-+...+..++.+.+. ..+...|..++.++++.+- +-.|...... |+|.+=+++
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~----~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ 196 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD----TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLT 196 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC----CCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHH
Confidence 988877777777777777777777777777777632 2456778888765555543 1345443332 455555555
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccccc---CCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHH
Q 013326 191 TFTYVLILLVILVRDGTSNKSRDYEIQ---GSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQY 266 (445)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~ 266 (445)
++.++++.++...-..+.++......+ +.-..++.++...+-+..||| |...+---..|-+||+| ..||++.-.+
T Consensus 197 ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K-~iPkAik~vf 275 (541)
T COG0833 197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK-SIPKAIKQVF 275 (541)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh-hhHHHHHHHH
Confidence 444433333222222222111111111 111223556666677788999 99888888899999987 6999988887
Q ss_pred HHHHHHHHHHHhH-HHhhcCCc-----------cccccccccCCc--cHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhh
Q 013326 267 TVGLLFYYGVTII-GYWAYGSS-----------VSVYLPEQIGGA--KWIKVFVNAAVFLQSLVSQHVFISPVYETLDTK 332 (445)
Q Consensus 267 ~~~~~~y~~~g~~-gy~~fG~~-----------~~~~il~~~~~~--~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~ 332 (445)
-=..++|+..-++ |...=.++ ..++....+++. ..+..+.|...+.+++.+----++..-+.+..+
T Consensus 276 wRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sL 355 (541)
T COG0833 276 WRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSL 355 (541)
T ss_pred HHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 7777788754322 22222222 122333333322 234556666666665554222222333444443
Q ss_pred hccccc-ccc---cccchHHHHHHHHHHHHHHHHHHHhccC---hHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 333 LLVLEE-SMF---SRENIKRRFFVRGVIFTANIFVAAAFPF---LGDFINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 333 ~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~lA~~~p~---~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
-+++.. +-| +|+..+...+.-+.++.+...++...+. ++-++++.|-.. .++.+-=++.|++.||
T Consensus 356 A~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 356 AKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 332110 011 1111222223333333333333333332 667777777433 5555556677777654
No 51
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.86 E-value=3.9e-05 Score=78.64 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=43.9
Q ss_pred HHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 013326 233 AIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 233 ~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG 285 (445)
.+.|+| |.......-+|+|||+| +.+|++..+..++.++|++..+.-....+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 467899 99999999999999987 69999999999999999886665544444
No 52
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.81 E-value=9.2e-08 Score=82.57 Aligned_cols=207 Identities=11% Similarity=0.106 Sum_probs=130.3
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhc------------------------
Q 013326 41 QMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFID------------------------ 96 (445)
Q Consensus 41 ~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~------------------------ 96 (445)
-....+.|-++|.|-|+ +|.+|+..||++++.++.+.+++++.+...+.+.....
T Consensus 16 vgllymfnlivgtgala-lpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 16 VGLLYMFNLIVGTGALA-LPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhHhhhhhhhhcccccc-chHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 45677899999999999 99999999999999999999999999887777643110
Q ss_pred --------C-----c------------------ccccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 97 --------G-----K------------------RFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEI 145 (445)
Q Consensus 97 --------~-----~------------------~~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l 145 (445)
+ + ++.+.+|++...|.|.|--+..+++++++||-...|.-.+-.+..++
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 0 0 01346788999999999999999999999999999998877777666
Q ss_pred Hhhc---CCC-------------Ccc--------hhHHHHHHHH-HHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 013326 146 NMVS---SDS-------------PVR--------LQIYILISGL-AFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLV 200 (445)
Q Consensus 146 ~~~~---~~~-------------~~~--------~~~~~~i~~~-~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 200 (445)
.... +.+ .|. .+++.+++.+ +++|+. +-+++.-+++.++....--......
T Consensus 175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpft--f~diqktk~iqiltslmrw~~~~~g-- 250 (319)
T KOG3832|consen 175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFT--FADIQKTKHIQILTSLMRWAAFILG-- 250 (319)
T ss_pred hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCcee--EeccccchhHHHHHHHHHHHhccch--
Confidence 5433 100 011 2455556543 344655 3344444455444333321111111
Q ss_pred HHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhccccccc
Q 013326 201 ILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPA 254 (445)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~ 254 (445)
.+........ +....+++...+-.+-.-++..+|+| +|+..|.....++.+.
T Consensus 251 ~~l~tmqaee--daa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 251 ISLATMQAEE--DAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhcc--cccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 1111111111 11111111111111223358889999 9999999888886554
No 53
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.80 E-value=3.3e-05 Score=78.34 Aligned_cols=186 Identities=10% Similarity=-0.010 Sum_probs=111.4
Q ss_pred cccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cc------hhHHHHHHHHHHHHhh
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSP--VR------LQIYILISGLAFFIFA 171 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~--~~------~~~~~~i~~~~~~pl~ 171 (445)
..++..+.|..||.+|..+..++..+...|=...-....++.+..+++...+.. .. .....+++.++.+++.
T Consensus 75 Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 75 GLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999888888889888887776542211 01 1222344455566655
Q ss_pred hhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh--cccchhhhhcc
Q 013326 172 NLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN--AAGMIPEMQST 249 (445)
Q Consensus 172 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~ 249 (445)
.....+-.......+...........+......+...+..+......+.+....+..+++..+=.+ .-.+.++..|.
T Consensus 155 -~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy 233 (442)
T TIGR00800 155 -FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRF 233 (442)
T ss_pred -HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhh
Confidence 555555555555555444332222222122222211110011100012223455666666544333 46789999999
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhHHHhh----cCCcc
Q 013326 250 LRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWA----YGSSV 288 (445)
Q Consensus 250 mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~----fG~~~ 288 (445)
+|++++ -.+....++.........+|+.+-.. +|+..
T Consensus 234 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 234 GKSKKT--AIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred cCCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999776 44457777777777777777777665 77653
No 54
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.62 E-value=6.3e-07 Score=91.95 Aligned_cols=235 Identities=10% Similarity=-0.019 Sum_probs=140.0
Q ss_pred HHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHHHHHHHHH
Q 013326 46 LVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWAIQYL 125 (445)
Q Consensus 46 l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i~~i~~~~ 125 (445)
.+..++|.|++.-.+.+..+.|.....+..++.+++...+..-+.+..+... +.-++.+.+++.+||.....+.....+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-cccchhhhhhhccCCcCCceeeHHHHH
Confidence 3677889898775688999999976777788888887777777777654432 234555778899999887777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHH----HHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 013326 126 TLLVANIGFILLAARSLKEINMVSSDSPVRLQIY----ILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVI 201 (445)
Q Consensus 126 ~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~----~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 201 (445)
.............+..++.... .++.. ....| ..++.+++..+ .....+........-....++.++..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~i~~~~~~~l--~~~gv~~~~~~~~~~~~i~~~~li~~ii~ 160 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGY-FPGLP-STWVWGILIAIIFILLITLL--NLFGVRVSGKIEFILTIIKLIALIAFIIV 160 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccc-ccccc-ccccccchhhhhhhhhhhhh--hhhhhhccchHHHHHHHHhhhHhhhhhhh
Confidence 6655555555555555554411 11111 01222 22332222222 23333333333222222222111111111
Q ss_pred H-HH--cCCCCCCc-----ccc----ccC----CccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHH
Q 013326 202 L-VR--DGTSNKSR-----DYE----IQG----SKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYS 264 (445)
Q Consensus 202 ~-~~--~~~~~~~~-----~~~----~~~----~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~ 264 (445)
. +. .+....+. +.. ..+ .+..++.+++.++....++| |.......-.|.|||+| +++|++..
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k-~IPra~~~ 239 (478)
T PF00324_consen 161 GVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK-TIPRATLL 239 (478)
T ss_pred cccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh-hhhhHhhh
Confidence 2 11 11111111 000 000 11123567888999999999 99999999999999987 69999999
Q ss_pred HHHHHHHHHHHHHhHHHhhcCC
Q 013326 265 QYTVGLLFYYGVTIIGYWAYGS 286 (445)
Q Consensus 265 s~~~~~~~y~~~g~~gy~~fG~ 286 (445)
++....++|+......-...|.
T Consensus 240 ~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 240 SVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hhhhhhhhhhhhhhhcccccCc
Confidence 9999999999887766555554
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.60 E-value=0.00065 Score=69.54 Aligned_cols=185 Identities=9% Similarity=-0.012 Sum_probs=98.4
Q ss_pred cccHHhHHHHhcccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc----CC-------CCcchhHHH--HHHHH
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQY-LTLLVANIGFILLAARSLKEINMVS----SD-------SPVRLQIYI--LISGL 165 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~-~~~~g~~i~y~i~~~~~l~~l~~~~----~~-------~~~~~~~~~--~i~~~ 165 (445)
..++.-+.|..||.+|..+..+... +...+=-..-....++.+..++... .+ ...+...++ +++.+
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 4789999999999999888888774 4555544455555666666555332 11 111111122 23444
Q ss_pred HHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccC--CccchHHHHHHHHHHHHHHh--ccc
Q 013326 166 AFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQG--SKTDKIYNAIGAMSAIIVAN--AAG 241 (445)
Q Consensus 166 ~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf--~~~ 241 (445)
+..++. ....+.++++...+........+...+..+.+....+..+....+ ......+.+..++...+=++ ...
T Consensus 168 l~~~~~--~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~ 245 (484)
T PRK11375 168 VNVGIG--FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAV 245 (484)
T ss_pred HHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 455554 566677777776666554433333333333333111111111100 01112244555554444445 355
Q ss_pred chhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHH----HhhcCCcc
Q 013326 242 MIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIG----YWAYGSSV 288 (445)
Q Consensus 242 ~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~g----y~~fG~~~ 288 (445)
+.|+..|..|++++ -.+....++.+...+...+|+.. ...+|+..
T Consensus 246 ~~~D~tRy~k~~~~--~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~ 294 (484)
T PRK11375 246 SASDFTQNAHSFRA--QALGQTLGLVVAYILFAVASVCIIAGASIHYGADT 294 (484)
T ss_pred cccchhcccCChhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999998876 44455556666666555555443 45666543
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.47 E-value=0.00094 Score=66.35 Aligned_cols=272 Identities=15% Similarity=0.121 Sum_probs=145.0
Q ss_pred cHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhh
Q 013326 102 RYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIR 181 (445)
Q Consensus 102 sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~ 181 (445)
+-..++|+.||.+|.++..+.+.+.+.|=...-.+..++. ... ..+.+...++++.++++.... +--.+.++
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~~~~~~~~~ili~g~l~~l~~--ifG~r~l~ 153 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS---GTGLPVWAGILIIGVLMTLVT--IFGYRALH 153 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc---CCCCcHHHHHHHHHHHHHHHH--HHhHHHHH
Confidence 3447789999999999999999999999888888877776 111 123344555555554444333 33345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh--cccchhhhhcccccccccchH
Q 013326 182 RWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN--AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 182 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~mk~p~~~~~~ 259 (445)
.++..+...............+. ............+.+ ..++..+++...-.+ .-....+..|.+|+|+.++.-
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~-~~~~~~~~~~~~~~~---~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~ 229 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFR-SKGGLDALWVKGPTS---PLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAF 229 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cccccceeeccCCCc---chhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHH
Confidence 55555544443322222222222 111111111111112 234444555444334 456778899999888732255
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCcc-ccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccccc
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYGSSV-SVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEE 338 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~ 338 (445)
.....+......+-+..|.....+-|+.. ..++...++. +...+.+...++...+-....++.--.+.+...+
T Consensus 230 ~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~--- 303 (442)
T COG1457 230 LAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK--- 303 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh---
Confidence 55667777777788888988888888766 3344444442 3333333344443333222222221112222221
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHH----hccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 339 SMFSRENIKRRFFVRGVIFTANIFVAA----AFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~lA~----~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
.++..|.+...+. ..+++|+ +..+++.++.++|+.. .+...+.=+=+|+..|+
T Consensus 304 -----l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i-~P~~~I~iad~~~~rr~ 360 (442)
T COG1457 304 -----LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFI-PPWGGVMIADYFIVRRR 360 (442)
T ss_pred -----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 1122333333222 3333343 4567999999999865 45555555555555543
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.42 E-value=0.00041 Score=65.17 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=88.1
Q ss_pred HHHHHHHhhhhhhhhhhh---HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHH
Q 013326 42 MGFMLVIVFNCGYILSFS---NLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYY 118 (445)
Q Consensus 42 a~~~l~~~~iG~GiLs~l---P~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i 118 (445)
-.+-.+.+++|+|.-+ = =.-|.+-|+. |....++++.+-..++..+.+..+.- +..+|+|+-++++||+...+
T Consensus 8 ~~f~~ig~~vGAGfAs-GqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f--~a~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 8 WAFAFIGTVVGAGFAS-GQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF--NATSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHHhhcccccc-hHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHhhHHHHHH
Confidence 3455677999999644 1 1234455665 56666666666666666555543332 24799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHH--HHHHHHHHHhhhhCCCcchhhHHH
Q 013326 119 TWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYI--LISGLAFFIFANLVPTMSAIRRWL 184 (445)
Q Consensus 119 ~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~--~i~~~~~~pl~~~~~~l~~l~~~s 184 (445)
.|+.+.+.+++.++.-+-..+..+++... .+.|. ++..+.+.... ++++.+.+-.+.
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~~~--------lP~wiGali~i~~v~i~l-fl~~vegi~tvn 142 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEMFG--------LPYWIGALIIILLVLILL-FLGRVEGIITVN 142 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhC--------ccHHHHHHHHHHHHHHHH-HHhcccceeeeh
Confidence 99999999999999988888888877763 22343 33334444444 666677664443
No 58
>PRK12488 acetate permease; Provisional
Probab=98.37 E-value=0.0052 Score=64.09 Aligned_cols=151 Identities=11% Similarity=0.064 Sum_probs=97.5
Q ss_pred ccCCChHHHHHHHHHHhhhhhhh-hhhhHHHHHhhchhHHHHHHHHHHHHHHH-HHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGYI-LSFSNLILVPLGWKWGILCMFFLAFYSLY-SQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~Gi-Ls~lP~af~~~G~~~g~~~l~~~~~~~~~-s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
..|+.++|...+.+..+.+|++. +. .|-...+.|+- +....+. ..+.+. ...++.+-.+.. +..|.+|.-++-
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG-~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~~--g~~T~~d~l~~R 139 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLG-ISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLRNL--GKYTFADVVSYR 139 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHHC--CCcchHHHHHHH
Confidence 36789999999999999887774 66 88877788874 2211111 111111 123333333332 248999999888
Q ss_pred cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 111 YG-REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 111 ~G-~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
|| |..|.+..+...+.........+...+..++.++. .+...-+++.++++..-. ..--++...|...+-.+
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g------i~~~~~iii~~~i~~~Yt-~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG------ISYLYAVVIVGALMVLYV-TFGGMLATTWVQIIKAV 212 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHH
Confidence 87 56888888877777777777777778888777752 223333344445555555 77788888888877765
Q ss_pred HHHHHH
Q 013326 190 ITFTYV 195 (445)
Q Consensus 190 ~~~~~~ 195 (445)
.++...
T Consensus 213 im~~~~ 218 (549)
T PRK12488 213 LLLSGT 218 (549)
T ss_pred HHHHHH
Confidence 554443
No 59
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.32 E-value=0.0023 Score=64.26 Aligned_cols=135 Identities=11% Similarity=0.129 Sum_probs=75.4
Q ss_pred CCcchhHHHHHHHHHHHHhh-hhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCccc------cccCCcc
Q 013326 152 SPVRLQIYILISGLAFFIFA-NLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSN---KSRDY------EIQGSKT 221 (445)
Q Consensus 152 ~~~~~~~~~~i~~~~~~pl~-~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~------~~~~~~~ 221 (445)
...+......+..++.+..+ +....-+.+++++.+++...+..+++.++......... +..+. +..+++.
T Consensus 170 y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~ 249 (550)
T KOG1289|consen 170 YEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKN 249 (550)
T ss_pred CcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCc
Confidence 33333333344444433333 12334467777777777666554444433322222111 11111 1111221
Q ss_pred chHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCcc
Q 013326 222 DKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSV 288 (445)
Q Consensus 222 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (445)
+-+.+..++-.-...+ |...-+.+.+|-||+++ +-+|.+..+..+..++=..+-+.-...-+++.
T Consensus 250 -~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 250 -NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred -chHHHHHhhccceeEEeccCchHHHHHHhcchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 2245555555556667 78889999999999987 58999998888888877766666666666533
No 60
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.32 E-value=0.004 Score=61.95 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=108.5
Q ss_pred cccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcch
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSA 179 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~ 179 (445)
..++.-+.|..||++|..+..+...+...|=-..-....++.++.+.+...+. .+...+..+++++..+.+ ....+.
T Consensus 57 Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~-~~~~~~~~i~~~l~~~~~--~~G~~~ 133 (386)
T TIGR02358 57 GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE-ESPMLWILIVGILVTLWL--LSGPLA 133 (386)
T ss_pred CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH--HHHHHH
Confidence 47889999999999999999999998888888888888899998888643111 122334444444444444 445677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh--cccchhhhhcccccccccc
Q 013326 180 IRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN--AAGMIPEMQSTLRQPAVMN 257 (445)
Q Consensus 180 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~mk~p~~~~ 257 (445)
++++...+........+...+....+....+ ..+.+ .+ ..+..+++...-.. .....|+..|..|+|++
T Consensus 134 i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~-~~----~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~-- 204 (386)
T TIGR02358 134 FVWLNNWSVWLLLIATLWLLVVVFSKADLSE--LWNRA-GD----MSFAVAVELVIAMPLSWLPLIADYTRFARNPRH-- 204 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhh--hcCCC-CC----ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcc--
Confidence 7777777766554433333333333321111 11111 11 22333333332221 23457899999887765
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 013326 258 MRKALYSQYTVGLLFYYGVTIIGYWAYGS 286 (445)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~ 286 (445)
.......+..+...+-..+|.....+.|+
T Consensus 205 ~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 205 VFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55667778888888888888887777665
No 61
>PRK11017 codB cytosine permease; Provisional
Probab=98.26 E-value=0.006 Score=61.11 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=94.0
Q ss_pred cccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcch
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSA 179 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~ 179 (445)
..++..+.|..||.+|..+..+...+...+=...-....++.++.... .+...+.+++.++..+.+ ... .+.
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~------~~~~~~~~i~~~l~~~~~-~~G-~~~ 141 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG------LDINLLIVLSGLLMTVTA-YFG-ISA 141 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHH-HHH-HHH
Confidence 578999999999999999988888777776555555556666655442 122334555555555555 322 344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh--cccchhhhhcccccccccc
Q 013326 180 IRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN--AAGMIPEMQSTLRQPAVMN 257 (445)
Q Consensus 180 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~mk~p~~~~ 257 (445)
++++...+........+..++....+.....+.. ...+.. ...+..++...+=.+ .-.+.++..|..|++++
T Consensus 142 i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~---~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-- 215 (404)
T PRK11017 142 LTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLK-AIVPAE---PLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-- 215 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh-cCCCCC---cccHHHHHHHHHHHHHHhHhcCCChHhhccCccc--
Confidence 4444444433332222222222333221111000 000011 123444455444333 46788999999887765
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 013326 258 MRKALYSQYTVGLLFYYGVTIIGYWAYGS 286 (445)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~ 286 (445)
-......+..+...+-..+|...-.+.|+
T Consensus 216 ~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 216 AVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22345555666666666777766666665
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.12 E-value=0.0016 Score=65.33 Aligned_cols=150 Identities=12% Similarity=0.075 Sum_probs=86.6
Q ss_pred cCCChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
.|+.++|...+.+..+.+|++ ++. .|-...+.|+.. ....+............+.+-.+. .+..|.+|.-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G-~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~--~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIG-FPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR--SGAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTH-HHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH--TT--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc--cchhhhhhhhhhhcC
Confidence 467889999999999888875 456 788888888753 322233233333333444443332 346899999999999
Q ss_pred cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326 113 REM--YYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 113 ~~g--~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
+.. +.+..+...+.........+...+..++.+.. .+.....++..++++... ..--++...+...+-.+.
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g------i~~~~~~~i~~~i~~iYt-~~GGl~av~~td~iQ~~i 153 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG------IPYNTAILIVGVIVIIYT-FFGGLRAVAWTDFIQGVI 153 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHTT-CTT------SHHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccc------hhhhHHHHHHHHHHHHhh-hhhhHhhhhHHHHHHHHH
Confidence 988 77766666666667777777777877777652 233444444445555555 677788777777666655
Q ss_pred HHHH
Q 013326 191 TFTY 194 (445)
Q Consensus 191 ~~~~ 194 (445)
++..
T Consensus 154 ~~~~ 157 (406)
T PF00474_consen 154 MIIG 157 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.10 E-value=0.017 Score=59.33 Aligned_cols=155 Identities=11% Similarity=0.066 Sum_probs=93.3
Q ss_pred ccccCCChHHHHHHHHHHhhhhh-hhhhhhHHHHHhhchhHHHHHHH--HHH-HHHHHHHHHHHHhhhhcCcccccHHhH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCG-YILSFSNLILVPLGWKWGILCMF--FLA-FYSLYSQWLLSAFHFIDGKRFIRYRDL 106 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~-GiLs~lP~af~~~G~~~g~~~l~--~~~-~~~~~s~~ll~~~~~~~~~~~~sy~~l 106 (445)
-...|+.++|...+.+..+.+|+ ..+. .|-...+.|+..-..... ... +...+-+..+.+..+. .+..|.+|.
T Consensus 37 ~~agr~~~~~~~~~s~~at~~s~~t~ig-~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~T~~e~ 113 (483)
T PRK09442 37 FLGNRSMGGFVLAMTLIATYISASSFIG-GPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK--YNAVTLNDM 113 (483)
T ss_pred eeeCCCccHHHHHHHHHHHHhhHhHHhC-ChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHH
Confidence 34467888999999998888776 4556 787777777631111110 111 1111112222222222 345899999
Q ss_pred HHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHH
Q 013326 107 MGYLYGRE-MYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLA 185 (445)
Q Consensus 107 ~~~~~G~~-g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~ 185 (445)
-++-||++ .+++..+...+.........+...+..++.+++ .+....+++.++++.... ..-.++...+...
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g------i~~~~~iii~~~iv~iYt-~~GGl~av~~TD~ 186 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG------ISYETGLLIFGITVALYT-AFGGFRAVVLTDA 186 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 99999864 566666666666666666667777777777762 233333444455556666 7788888888887
Q ss_pred HHHHHHHHHH
Q 013326 186 VSFIITFTYV 195 (445)
Q Consensus 186 ~~~~~~~~~~ 195 (445)
+-.+..+...
T Consensus 187 iQ~~i~~~~~ 196 (483)
T PRK09442 187 LQGIVMLVGT 196 (483)
T ss_pred HHHHHHHHHH
Confidence 7766554443
No 64
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.07 E-value=0.023 Score=59.38 Aligned_cols=149 Identities=11% Similarity=0.132 Sum_probs=90.6
Q ss_pred ccCCChHHHHHHHHHHhhhhh-hhhhhhHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 33 TVGHDSWQQMGFMLVIVFNCG-YILSFSNLILVPLGWKWGILCMFFLAFYSL-YSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~-GiLs~lP~af~~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
..|+.++|...+.+..+.+++ ..+. .|-...+.|+- +....+. ..+.. ....++.+-.+.. +..|.+|.-++-
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG-~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~--g~~T~~d~l~~R 139 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLG-ISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNL--GRYTFADVASYR 139 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHc--CCccHHHHHHHH
Confidence 467788888888888887764 5677 88777778864 2221111 11111 2223334433332 248999999988
Q ss_pred cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 111 YG-REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 111 ~G-~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
|| |..|.+..+...+.........+...+..++.++. .+...-+++.++++..-. ..--++...|...+-.+
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g------i~~~~~iii~~~i~~~Yt-~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG------LNYHVAVVLVGILMVMYV-LFGGMLATTWVQIIKAV 212 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 87 45677777766666666666667777777777652 222223344445555555 67777777787776655
Q ss_pred HHHH
Q 013326 190 ITFT 193 (445)
Q Consensus 190 ~~~~ 193 (445)
.++.
T Consensus 213 im~~ 216 (549)
T TIGR02711 213 LLLF 216 (549)
T ss_pred HHHH
Confidence 5443
No 65
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.99 E-value=0.027 Score=57.71 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=97.9
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhh-hhhHHHHHhhchhHHHHHHHHHHHHHHHH----HHHHHHhhhhcCcccccHHh
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYIL-SFSNLILVPLGWKWGILCMFFLAFYSLYS----QWLLSAFHFIDGKRFIRYRD 105 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiL-s~lP~af~~~G~~~g~~~l~~~~~~~~~s----~~ll~~~~~~~~~~~~sy~~ 105 (445)
-...|+.+++.....+..+.+|++.+ . .|-...+.|+......... ....+.. ...+.+..+. .+..|.+|
T Consensus 36 ~~agr~l~~~~~~~s~~at~~s~~t~~g-~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~T~~e 111 (471)
T TIGR02119 36 FLGGRSMGGFVLAMTLVATYGSASSFIG-GPGIAYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRK--YNAITIND 111 (471)
T ss_pred eEeCCcccHHHHHHHHHHHHhhHHHHcC-cHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--cCCccHHH
Confidence 33468899999999999999987654 5 6777777776321111100 0111111 1112222222 34589999
Q ss_pred HHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHH
Q 013326 106 LMGYLYGRE-MYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWL 184 (445)
Q Consensus 106 l~~~~~G~~-g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s 184 (445)
.-++-||++ .+++..++..+.+++...+-+...+..++.+++ .+...-+++.++++.... ..-.++...+..
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g------i~~~~~iii~~~iv~iYt-~~GG~~av~~td 184 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG------LSYLTALFIFSSSVLIYT-TFGGFRAVALTD 184 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHH-HhhhHHHHHHHH
Confidence 999999954 577888888887887777777778888877763 233333444445555555 777888888888
Q ss_pred HHHHHHHHHHHHH
Q 013326 185 AVSFIITFTYVLI 197 (445)
Q Consensus 185 ~~~~~~~~~~~~i 197 (445)
.+-.+..+...++
T Consensus 185 ~iQ~~v~~~~~~~ 197 (471)
T TIGR02119 185 AIQGIVMFTGTTI 197 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 7776555444333
No 66
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.97 E-value=0.00033 Score=71.10 Aligned_cols=177 Identities=14% Similarity=0.086 Sum_probs=91.1
Q ss_pred cccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------CcchhHHHH--HHHHHHH
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDS---------PVRLQIYIL--ISGLAFF 168 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~---------~~~~~~~~~--i~~~~~~ 168 (445)
..++..+.|..||.+|..+..+...+...|=...-....++.+..+.+...+. ......+.. ++.++..
T Consensus 70 Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 149 (440)
T PF02133_consen 70 GLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQT 149 (440)
T ss_dssp ---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHH
T ss_pred CCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888888889999999988754110 001111222 1222222
Q ss_pred HhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh--cccchhhh
Q 013326 169 IFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN--AAGMIPEM 246 (445)
Q Consensus 169 pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i 246 (445)
+. .....+.++.+............+........+....+..+.+....+.. .+..++....-.+ .-.+.++.
T Consensus 150 ~~--~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~Dy 224 (440)
T PF02133_consen 150 LF--AIYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSG---SFLAAIALVIGSWISWAPNASDY 224 (440)
T ss_dssp HH--HCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S----HHHHHHHHHCCCHHHHCCCHHH
T ss_pred HH--HhcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHH---HHHHHHHHHHhhhhhhhhccccH
Confidence 22 34555666666555544333222222222222221111111111001101 2333333332222 24667799
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhh
Q 013326 247 QSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWA 283 (445)
Q Consensus 247 ~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 283 (445)
.|.+|++++ -.+....++.........+|++|...
T Consensus 225 sRy~~~~~~--~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 225 SRYAKSDTS--AWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HTTC--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCCC--cEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 999998776 45666777766667666666665443
No 67
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.027 Score=55.99 Aligned_cols=309 Identities=11% Similarity=0.098 Sum_probs=148.1
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchh
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAI 180 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l 180 (445)
.+..|..++-++|+..++..+...+....++++=.+..+--++-++. .....-.++.++..+... ..+..+.+
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~------ip~~~g~iItav~~~iil-~~~~~r~~ 149 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG------IPLIIGAVITAVDVLIIL-LLKGYRLL 149 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------ChHHHHHHHHHHHHHHHH-HhcchHHH
Confidence 57788888889999999999999999999999988888888887762 112222333444333333 34434444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ccc-cccCCcc-chHHHHHHHHHHHHH---Hh--cccchhhhhccccc
Q 013326 181 RRWLAVSFIITFTYVLILLVILVRDGTSNKS-RDY-EIQGSKT-DKIYNAIGAMSAIIV---AN--AAGMIPEMQSTLRQ 252 (445)
Q Consensus 181 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~f---af--~~~~~~~i~~~mk~ 252 (445)
..+...-....++ ...+..+...++..+ ... ..+..+. +...-...-+|..+. .| .|-+.. +..++
T Consensus 150 E~~v~~l~~~~~i---~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~---~~~~~ 223 (416)
T COG1914 150 ERVVLILGLVLVI---LFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQD---AGIKG 223 (416)
T ss_pred HHHHHHHHHHHHH---HHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceecc---ccccc
Confidence 3333222222111 111112222222110 011 1111111 111111111111111 11 222222 11111
Q ss_pred cc-ccchHHH---HHHHHHHHHHHHHHHHhHHHhhcCCccc-cccccccC----CccHHHHHHHHHHHHHHhhhh----H
Q 013326 253 PA-VMNMRKA---LYSQYTVGLLFYYGVTIIGYWAYGSSVS-VYLPEQIG----GAKWIKVFVNAAVFLQSLVSQ----H 319 (445)
Q Consensus 253 p~-~~~~~~~---~~~s~~~~~~~y~~~g~~gy~~fG~~~~-~~il~~~~----~~~~~~~~~~~~~~~~~~~s~----~ 319 (445)
++ ++..+.. ...++.+..++...+-......|..+.+ ++.-.-.+ ..+.+...+...+.+.++.+- .
T Consensus 224 ~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~ 303 (416)
T COG1914 224 EENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTV 303 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH
Confidence 11 1113322 3444555555555554444444433222 22111111 001122223333333322221 1
Q ss_pred hhhhhHHHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 013326 320 VFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAAFPFLGDFINVIGSFSLIPLTFVFPSMVFIKAKA 399 (445)
Q Consensus 320 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~p~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~ 399 (445)
.-...-...++...+.+. +++.+|...|....+.+..+....-+.+.++.+.+.+-+..+-+..++++++-..|
T Consensus 304 ~~~~a~~~~~~g~~~~~~------~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k 377 (416)
T COG1914 304 VATYAGQIVMEGFLNWRI------PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDK 377 (416)
T ss_pred HHhhhhHHHHHhhhcccC------chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 111111123333333221 24567778887777776666665559999999999999988888888888777766
Q ss_pred c-----ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 400 K-----ASTIQKKAWHWFNILFFTLVTIATTVAA 428 (445)
Q Consensus 400 ~-----~~~~~~~~~~~~~i~~g~~~~~~gt~~s 428 (445)
+ +.++|.++..|.+.++=..+.+.-.+..
T Consensus 378 ~~mg~~~~~~~~~~~~~~v~~~i~~L~i~li~~~ 411 (416)
T COG1914 378 KLMGDYKNPRWLTVLGWIVVILIVALNIILLVGT 411 (416)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 2345666667766666555555554443
No 68
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.89 E-value=0.036 Score=55.66 Aligned_cols=150 Identities=9% Similarity=0.037 Sum_probs=97.1
Q ss_pred cCCChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
.|+.++|...+.+..+.+|++ .++ .|....+.|+. +................+..+..+. .+..|.+|.-++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig-~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLG-LPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN--NGAYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhc-CcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--cCCCchhHHHHHHhC
Confidence 367788888888888777765 455 78887788853 2222222222222333344443332 236899999999999
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 R-EMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~-~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
+ ..+.+..+...+.........+...+..++.+.+ .+...-.++.++++.... ..-.++...+...+-.+.+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g------i~~~~~~ii~~~i~~~Yt-~~GG~~av~~Td~iQ~~i~ 150 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG------LDLYLSLLLLGAITILYT-VFGGLKAVVWTDTIQAVIM 150 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------chHHHHHHHHHHHHHHHH-HHcchHHHHHHHHHHHHHH
Confidence 8 5777777777788888888888888888888762 223333344445555555 6777888888877776655
Q ss_pred HHH
Q 013326 192 FTY 194 (445)
Q Consensus 192 ~~~ 194 (445)
+..
T Consensus 151 ~~~ 153 (407)
T TIGR00813 151 ILG 153 (407)
T ss_pred HHH
Confidence 443
No 69
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.75 E-value=0.07 Score=54.92 Aligned_cols=150 Identities=9% Similarity=-0.054 Sum_probs=100.0
Q ss_pred ccCCChHHHHHHHHHHhhhh-hhhhhhhHHHHHhhchhHHHHHHHH---HHHHHHHHHHHHHHhhhhcCcccccHHhHHH
Q 013326 33 TVGHDSWQQMGFMLVIVFNC-GYILSFSNLILVPLGWKWGILCMFF---LAFYSLYSQWLLSAFHFIDGKRFIRYRDLMG 108 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG-~GiLs~lP~af~~~G~~~g~~~l~~---~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~ 108 (445)
..|+.+.+-......-+.++ ...+. +|-...+.|+....+.... ..+...+-...+.+..+. ++..|.+|.-+
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG-~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~--~~~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLG-LPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA--RGATTIPDFLE 112 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhc-chHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCccHHHHHH
Confidence 34566666777777777777 88899 9999999997643333332 222222233333333222 34579999999
Q ss_pred Hhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHH
Q 013326 109 YLYG-REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVS 187 (445)
Q Consensus 109 ~~~G-~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~ 187 (445)
.-|| |+.|.+..++..+.....+..-+...+..++.... .+...-+.+.+.++..-. .+-.+++..|...+-
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g------i~~~~~~~~~~~~v~~Yt-~~gG~~av~~Td~iq 185 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG------ISYVTGILIGALIVALYT-FLGGLRAVVWTDFIQ 185 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CCHHHHHHHHHHHHHHHH-HHcChhHHHHHHHHH
Confidence 9999 89999999999999999999999999999866653 222222333344455555 666777777777665
Q ss_pred HHHHH
Q 013326 188 FIITF 192 (445)
Q Consensus 188 ~~~~~ 192 (445)
...+.
T Consensus 186 g~im~ 190 (493)
T COG0591 186 GLIML 190 (493)
T ss_pred HHHHH
Confidence 54443
No 70
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.74 E-value=0.065 Score=54.14 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=36.0
Q ss_pred cccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEIN 146 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~ 146 (445)
..+..|+.++-+||+..++..+...+.+.+..++-....+.-++.++
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999988888777777777777776766666666554
No 71
>PRK09395 actP acetate permease; Provisional
Probab=97.66 E-value=0.11 Score=54.40 Aligned_cols=150 Identities=9% Similarity=0.086 Sum_probs=92.0
Q ss_pred ccCCChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhc
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLY 111 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~ 111 (445)
..|+.++|...+.+..+.+|++ .++ .|-...+.|+.. ....+...+.......++.+-.+. .+..|++|.-+.-|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG-~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~--~g~~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLG-ISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN--LGKYTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHH-hhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh--CCCccHHHHHHHHc
Confidence 4678888988888888888754 566 887777888742 211111111111122333332232 23589999999999
Q ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326 112 G-REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 112 G-~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
| |..|.+..+...+.........+...+..++.++. .+...-+++.++++..-. ..--++...|...+-.+.
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g------i~~~~~ili~~~i~~iYt-~~GGm~av~~TD~iQ~ii 215 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG------LNYHVAVVLVGVLMMVYV-LFGGMLATTWVQIIKAVL 215 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHH
Confidence 8 45788877776666666666666777777777652 233333444445555555 677788887777766555
Q ss_pred HHH
Q 013326 191 TFT 193 (445)
Q Consensus 191 ~~~ 193 (445)
++.
T Consensus 216 m~~ 218 (551)
T PRK09395 216 LLS 218 (551)
T ss_pred HHH
Confidence 443
No 72
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.54 E-value=0.025 Score=54.55 Aligned_cols=107 Identities=9% Similarity=0.040 Sum_probs=82.3
Q ss_pred CChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccch
Q 013326 36 HDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREM 115 (445)
Q Consensus 36 ~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g 115 (445)
..+.|..+.+=..++-|+|-.. =|-.-.+-||+++.+..++-+++..--.=...-. .+.+++-+|.+|++++..||++
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~-GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~-~SvR~~G~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIV-GPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLM-ASVRHKGKSIGEIAGKYLGKRA 128 (376)
T ss_pred CCchHHhhHHHHHHHhccccch-HHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHh-hhhcCCCccHHHHHHHHHHHHH
Confidence 3455788899999999999999 9999999999999988877654432222111111 1122445799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 116 YYYTWAIQYLTLLVANIGFILLAARSLKE 144 (445)
Q Consensus 116 ~~i~~i~~~~~~~g~~i~y~i~~~~~l~~ 144 (445)
|.+..+..++.+.....++....++.+..
T Consensus 129 ~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 129 KKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988888877777644
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.37 E-value=0.2 Score=50.44 Aligned_cols=194 Identities=12% Similarity=0.069 Sum_probs=105.2
Q ss_pred ccccHHhHHHHhcccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCC-----CcchhHHHH--H
Q 013326 99 RFIRYRDLMGYLYGREMYY---YTWAIQYLTLLVANIGFILLAARSLKEINMVS------SDS-----PVRLQIYIL--I 162 (445)
Q Consensus 99 ~~~sy~~l~~~~~G~~g~~---i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~------~~~-----~~~~~~~~~--i 162 (445)
...+|+.+.|..||-+|.. +.+....+.-||... -..+..++.++... ++. ..+...++. +
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 3579999999999987755 455555555555432 23444444444433 110 111222222 2
Q ss_pred HHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-Ccccc-ccCCccchHHHHHHHHHHHHHHh--
Q 013326 163 SGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNK-SRDYE-IQGSKTDKIYNAIGAMSAIIVAN-- 238 (445)
Q Consensus 163 ~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~faf-- 238 (445)
+-++-++. ..+..++++++-..+.....+.+.-.+.+...+....+ ..+.+ .........+.+...+...+=-|
T Consensus 178 fW~l~~l~--~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~At 255 (497)
T COG1953 178 FWVLQLLV--LFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWAT 255 (497)
T ss_pred HHHHHHHH--HhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 22333332 56778888888777766665555555555555543211 11111 01112222344444444333333
Q ss_pred cccchhhhhcccccccccchHHHHHHHHHHHHHHHHH----HHhHHHhhcCCcc--ccccccccCCc
Q 013326 239 AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYG----VTIIGYWAYGSSV--SVYLPEQIGGA 299 (445)
Q Consensus 239 ~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~----~g~~gy~~fG~~~--~~~il~~~~~~ 299 (445)
..-|+|+..|.-|+|+..... -..+..+.+.+.-+ .+...+..||+.. +.+++.++++.
T Consensus 256 l~lN~~DFsRfa~s~~~~~~g--q~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~ 320 (497)
T COG1953 256 LALNIPDFTRFAKSQKAQIWG--QLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSG 320 (497)
T ss_pred HhcCCchhhcccCChhhhhhc--cchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccc
Confidence 478999999999998764333 23444444444444 4455788999985 45788888854
No 74
>PRK10484 putative transporter; Provisional
Probab=97.15 E-value=0.42 Score=49.69 Aligned_cols=159 Identities=11% Similarity=-0.019 Sum_probs=82.8
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhh-hhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYI-LSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGY 109 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~Gi-Ls~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~ 109 (445)
--..|+.++|-..+.+..+.++++. +. .|-...+.|+.... ......+......+.+..-.+. .+..|.+|.-++
T Consensus 34 flagR~l~~~~~~~sl~AT~~Sa~tflG-~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r--~~~~T~~e~l~~ 109 (523)
T PRK10484 34 FLAGRSLTGPVIAGSLLLTNLSTEQLVG-LNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLK--SGITTIPDFLEE 109 (523)
T ss_pred eecCCCCchHHHHHHHHHHHhhHHHHhc-chHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 3346889999998888888776654 45 77777677764211 1111111111222333332222 345799999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh--cCCCCcchhHHHH--HHHHHHHHhhhhCCCcchhhHHH
Q 013326 110 LYGREMYYYTWAIQYLTLLVANIG-FILLAARSLKEINMV--SSDSPVRLQIYIL--ISGLAFFIFANLVPTMSAIRRWL 184 (445)
Q Consensus 110 ~~G~~g~~i~~i~~~~~~~g~~i~-y~i~~~~~l~~l~~~--~~~~~~~~~~~~~--i~~~~~~pl~~~~~~l~~l~~~s 184 (445)
-||+..+.+......+........ .+...+..++.++.. ..+.+.....+.. +.++++..-. ..--++...+.-
T Consensus 110 Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt-~~GGl~aV~~TD 188 (523)
T PRK10484 110 RYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYA-VFGGLKAVAVSD 188 (523)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHH
Confidence 999988777666544443333222 222333344443321 0112211112221 1223334444 666788888888
Q ss_pred HHHHHHHHHH
Q 013326 185 AVSFIITFTY 194 (445)
Q Consensus 185 ~~~~~~~~~~ 194 (445)
.+-.+.++..
T Consensus 189 ~iQ~vim~i~ 198 (523)
T PRK10484 189 TINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHH
Confidence 7776555443
No 75
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.08 E-value=0.35 Score=47.62 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=56.1
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhh--CCCcc
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANL--VPTMS 178 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~~l~ 178 (445)
.+..|..++-+||+..+...+...+.......+-....+.-++.+. ..+...+.++.++..+.+. + .++.+
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~------g~~~~~~~~~~~~~~~~ll-~~~~~~y~ 114 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF------GIPLWIWVLLVAVIAILLL-WLSSGGYR 114 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCcHHHHHHHHHHHHHHH-HHHhccch
Confidence 5777888888999988888888888888877777777777776554 2234556555555555554 4 56677
Q ss_pred hhhHHHHHHHHH
Q 013326 179 AIRRWLAVSFII 190 (445)
Q Consensus 179 ~l~~~s~~~~~~ 190 (445)
.+..+...-+..
T Consensus 115 ~~E~~~~~lv~~ 126 (358)
T PF01566_consen 115 RLERILKVLVAV 126 (358)
T ss_pred HHHHHHHHHHHH
Confidence 776665544333
No 76
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.01 E-value=0.42 Score=47.24 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=43.0
Q ss_pred HHHHHhhhhhhhhhhhH-HHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHHHH
Q 013326 44 FMLVIVFNCGYILSFSN-LILVPLG--WKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTW 120 (445)
Q Consensus 44 ~~l~~~~iG~GiLs~lP-~af~~~G--~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i~~ 120 (445)
+.+..-.+|+|.|- .| +.-.++| |..+.+..++.++..-..+.. . .. +..-+|+++.++. ||+...+..
T Consensus 2 ~~lFamffGAGNlI-fPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---a--v~-~~gG~~~~l~~~~-g~~f~~lf~ 73 (378)
T TIGR00796 2 FMLFALFFGAGNII-FPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---A--LA-LVGGGYDSLSARI-GKVFGILFT 73 (378)
T ss_pred hHHHHHHHhhhHHh-hhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---e--ee-ecCCCHHHHHHHh-ChHHHHHHH
Confidence 35677789999999 64 5555665 666666666666554444332 1 11 1123688887776 565555544
Q ss_pred HHHH
Q 013326 121 AIQY 124 (445)
Q Consensus 121 i~~~ 124 (445)
..++
T Consensus 74 ~~~~ 77 (378)
T TIGR00796 74 VILY 77 (378)
T ss_pred HHHH
Confidence 4333
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.00 E-value=0.053 Score=55.87 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHH
Q 013326 226 NAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIG 280 (445)
Q Consensus 226 ~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~g 280 (445)
++-..+|++.=+- |...=..+-.|+|+|++ .++|-...+..++++.|+++.++-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSk-SIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSK-SIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccc-cCCccchHHHHHHHHHHHHHHHHh
Confidence 3444456665444 55566677899999998 499999999999999999887765
No 78
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.99 E-value=0.61 Score=48.82 Aligned_cols=151 Identities=11% Similarity=0.035 Sum_probs=92.6
Q ss_pred cccCCChHHHHHHHHHHhhhhh-hhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHh
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCG-YILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~-GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~ 110 (445)
...|+.++|...+.+..+.+++ ..++ .|-...+.|+-. ................++..-.+.. +..|-+|.-++-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG-~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr~--~~~T~~e~l~~R 104 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFIS-MAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRKF--GKYTVPDFIGDR 104 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHH-HHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHC--CCccHHHHHHHH
Confidence 3468899999999999998865 4666 887777777632 1111111111112233444444332 357888988888
Q ss_pred ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHH
Q 013326 111 YGR-EMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFI 189 (445)
Q Consensus 111 ~G~-~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~ 189 (445)
||+ ..+.+..+...+.........+...+..++.+.. .+...-+++.++++..-. ..--++...|.-.+-.+
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g------i~~~~~iii~~~i~~iYt-~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE------VDFETGVFIGMAIVFFYA-VLGGMKGVTWTQVAQYI 177 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 885 4577777776666666666666777777777763 223333344445555555 66778888777777655
Q ss_pred HHHH
Q 013326 190 ITFT 193 (445)
Q Consensus 190 ~~~~ 193 (445)
.++.
T Consensus 178 im~i 181 (552)
T TIGR03648 178 VLIV 181 (552)
T ss_pred HHHH
Confidence 5443
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.97 E-value=0.59 Score=48.36 Aligned_cols=154 Identities=7% Similarity=-0.084 Sum_probs=87.6
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhh-hhhhHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHhhh---hcCcccccHHh
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYI-LSFSNLILVPLGWKWGILCMFFLAFYS-LYSQWLLSAFHF---IDGKRFIRYRD 105 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~Gi-Ls~lP~af~~~G~~~g~~~l~~~~~~~-~~s~~ll~~~~~---~~~~~~~sy~~ 105 (445)
--..|+.++|...+.+..+.+|+.. ++ .|-...+.|+-. . ...+...+. .....++..-.+ ..+.+..|.+|
T Consensus 36 ~lagr~l~~~~~~~s~~At~~Sa~t~iG-~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e 112 (502)
T PRK15419 36 ILGGRSLGPFVTALSAGASDMSGWLLMG-LPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPD 112 (502)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHH-hhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHH
Confidence 3346888999999998888887765 45 788888888642 1 111111111 111122221111 11123578899
Q ss_pred HHHHhcccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhH
Q 013326 106 LMGYLYGREMYY---YTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRR 182 (445)
Q Consensus 106 l~~~~~G~~g~~---i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~ 182 (445)
.-++-||++.+. +..+...+.....+.+-+...+..++.+++ .+...-+++.++++..-. ..--++...+
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g------i~~~~~iii~~~iv~iYt-~~GGl~aV~~ 185 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG------MSYETALWAGAAATILYT-FIGGFLAVSW 185 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHH-HhhhHHHHHH
Confidence 999999865444 444444444444444545556666666652 233333444445555555 7778888888
Q ss_pred HHHHHHHHHHHH
Q 013326 183 WLAVSFIITFTY 194 (445)
Q Consensus 183 ~s~~~~~~~~~~ 194 (445)
.-.+-.+.++..
T Consensus 186 TD~iQ~~imi~g 197 (502)
T PRK15419 186 TDTVQASLMIFA 197 (502)
T ss_pred HHHHHHHHHHHH
Confidence 887776555433
No 80
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.96 E-value=0.58 Score=48.18 Aligned_cols=152 Identities=9% Similarity=-0.005 Sum_probs=84.9
Q ss_pred ccCCChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhh-hc--CcccccHHhHHH
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHF-ID--GKRFIRYRDLMG 108 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~-~~--~~~~~sy~~l~~ 108 (445)
..|+.+++...+.+..+.+++. .+. .|-...+.|+.. ........+........+.+-.+ .. +.+..|.+|.-+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G-~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMG-LPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHh-hHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 3678889998888888877754 566 787777788742 21111111112222333333222 21 234578999999
Q ss_pred HhcccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHH
Q 013326 109 YLYGREMYY---YTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLA 185 (445)
Q Consensus 109 ~~~G~~g~~---i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~ 185 (445)
.-||++.+. +..+...+........-+...+..++.+++ .+...-+++.++++..-. ..--++...+...
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g------i~~~~~iii~~~i~~~Yt-~~GGl~av~~TD~ 184 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG------LDYKTGLLIGALIIVIYT-FFGGFLAVSWTDF 184 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------ccHHHHHHHHHHHHHHHH-HhhhHHHHHHHHH
Confidence 999965443 334433333333344445556666666642 223333344444555555 6777788777777
Q ss_pred HHHHHHHH
Q 013326 186 VSFIITFT 193 (445)
Q Consensus 186 ~~~~~~~~ 193 (445)
+-.+.++.
T Consensus 185 iQ~~i~~~ 192 (487)
T TIGR02121 185 VQGLLMFF 192 (487)
T ss_pred HHHHHHHH
Confidence 66555443
No 81
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.17 E-value=1.6 Score=43.69 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhHHHH-Hhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326 37 DSWQQMGFMLVIVFNCGYILSFSNLIL-VPLG--WKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR 113 (445)
Q Consensus 37 ~s~~~a~~~l~~~~iG~GiLs~lP~af-~~~G--~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~ 113 (445)
...+..-+.+.....|+|=|= .|-.. .++| |..+.+.+++.+..--.-+.+ ...+. .-+++|+++++ ||
T Consensus 3 k~~l~ig~~LFamFFGAGNLI-FPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi--a~~~~----~~~~~~l~~~v-~~ 74 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLI-FPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI--AVAKS----GGGIEDLASRV-GP 74 (427)
T ss_pred chhhhHHHHHHHHHhCCcccc-chHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HHhhc----CCCHHHHhccc-Cc
Confidence 345667788899999999999 76554 4455 788888888776432222211 11111 12677888776 34
Q ss_pred chhHH
Q 013326 114 EMYYY 118 (445)
Q Consensus 114 ~g~~i 118 (445)
+...+
T Consensus 75 ~f~~i 79 (427)
T PF05525_consen 75 KFALI 79 (427)
T ss_pred HHHHH
Confidence 44433
No 82
>PRK15015 carbon starvation protein A; Provisional
Probab=96.17 E-value=0.16 Score=52.66 Aligned_cols=101 Identities=7% Similarity=0.023 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHHH
Q 013326 40 QQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYT 119 (445)
Q Consensus 40 ~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i~ 119 (445)
+--+-+=..++-|+|-+- =|-.-++.||+++.+..++-.++..--.=..+. ..+.+++-+|.+|++++..|+.++.+.
T Consensus 86 ~VLfGHHFasIAGAGPiv-GPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L-~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLV-GPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVL-FVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred cchhHHHHHHHhccCccH-HHHHHHHHcchHHHHHHHHcceeechhhhhhhe-eeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 567788899999999999 999999999999999888765432211111111 112234457999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013326 120 WAIQYLTLLVANIGFILLAARSL 142 (445)
Q Consensus 120 ~i~~~~~~~g~~i~y~i~~~~~l 142 (445)
.+..++.+......+...+.+.+
T Consensus 164 li~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 164 LVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888777777777666
No 83
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.05 E-value=0.04 Score=55.95 Aligned_cols=212 Identities=13% Similarity=0.049 Sum_probs=118.2
Q ss_pred hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-cccccHHhHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 013326 55 ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDG-KRFIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIG 133 (445)
Q Consensus 55 iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~-~~~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~ 133 (445)
.|- ++|...|+|+..|.+++.+...++..|..--....+... +.--.| -+..+.+|+....-+.++..+.+.-.+..
T Consensus 50 flr-l~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~y-flis~slg~efggsigiIy~f~~aVa~am 127 (643)
T KOG2083|consen 50 FLR-LGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVY-FLISRSLGPEFGGSIGIIYAFANAVATAM 127 (643)
T ss_pred hhh-hhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEE-EEEEecccccccchhHHHHHHHHHHHHHH
Confidence 456 799999999999999988887777666543332222110 000122 22334567777777788888888899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHHH--HHHcCCC-CC
Q 013326 134 FILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLVI--LVRDGTS-NK 210 (445)
Q Consensus 134 y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~--~~~~~~~-~~ 210 (445)
|.+..++.+.+++...+....+. ...+..++++.. +.-...|.+.+-++..++.++.+.-+ +....++ .+
T Consensus 128 ~~vgfaEsv~~l~~~~s~~~i~g--i~~vt~~ill~i-----~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~ 200 (643)
T KOG2083|consen 128 YVVGFAESVAHLFETESKEMIDG--IGSVTVLILLAI-----NVAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFS 200 (643)
T ss_pred hhhhHHHHHHHHHHhccHHHhcc--hhHHHHHHHHHh-----hhccchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhc
Confidence 99999999999997542111111 111111222222 24445555555544432221111000 0000000 00
Q ss_pred -----Ccc---ccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHHH
Q 013326 211 -----SRD---YEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGV 276 (445)
Q Consensus 211 -----~~~---~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~ 276 (445)
... .+..+.+...=..+|..++++.=+. |.-.=..+-.++|+|++ ..++....+......+|..+
T Consensus 201 ~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~-~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 201 SGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQK-AIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred ccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchh-hcccchhhhhhhhhhhhhhh
Confidence 000 0000011110013444456666666 66666677899999987 58899999999999999654
No 84
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.03 E-value=1.9 Score=43.21 Aligned_cols=85 Identities=14% Similarity=-0.096 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHH---HHHHHhhhhcCcccccH-----Hh
Q 013326 35 GHDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQ---WLLSAFHFIDGKRFIRY-----RD 105 (445)
Q Consensus 35 ~~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~---~ll~~~~~~~~~~~~sy-----~~ 105 (445)
++.|.+|+.+..+.+.+|.| ++. +|-+.+.+|.- ++..|-+.+++..-+. ..+...++.. +++.+| ..
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~G-va~Ai~~GGpG-AvFWMWI~allGm~~~~~e~~L~~~yr~~-~~~g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVG-VATAIAIGGPG-AVFWMWVTAFIGMATKFVESTLAQKYRER-DADGVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHH-HHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHeeee-CCCCCEecChHHH
Confidence 55899999999999999998 999 99998888743 4445544444433332 2222222221 112235 67
Q ss_pred HHHHhcccchhHHHHHH
Q 013326 106 LMGYLYGREMYYYTWAI 122 (445)
Q Consensus 106 l~~~~~G~~g~~i~~i~ 122 (445)
+-+...|||...+..++
T Consensus 122 i~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHhCccHHHHHHHHH
Confidence 87888888766666655
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.19 E-value=0.54 Score=46.46 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=61.0
Q ss_pred cccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcch
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSA 179 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~ 179 (445)
..-..+++++.+|+.|+.+..+.+.+.|++++++.....+|.++++.+ ..+.+.|.++..+..+.++ .-.+++
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-----k~~y~~~v~~~~l~s~~ia--~~Gl~~ 326 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-----KLSYKTWVIVFTLFSFIVA--NLGLTQ 326 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHH--HhCHHH
Confidence 345678999999999999999999999999999999999999999864 2456667776666666555 335666
Q ss_pred hhHHH
Q 013326 180 IRRWL 184 (445)
Q Consensus 180 l~~~s 184 (445)
+-..+
T Consensus 327 Ii~~~ 331 (378)
T TIGR00796 327 IISIS 331 (378)
T ss_pred HHHHH
Confidence 54444
No 86
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.14 E-value=0.21 Score=50.64 Aligned_cols=106 Identities=10% Similarity=0.071 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchh
Q 013326 37 DSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMY 116 (445)
Q Consensus 37 ~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~ 116 (445)
.+.+..+-+=..++-|+|.+- =|-.-+|-||.+|.+..++-+.+..--.=.++.. .+.+++-.|.+|++++.+|+..+
T Consensus 52 tnk~vlfGhHFaaIAGAGPiv-GPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~-~SvR~~G~Si~~ia~~~lG~~a~ 129 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIV-GPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLM-LSVRHGGKSIGEIAGKYLGRTAK 129 (575)
T ss_pred CCchhhhHHHHHHHhccCcch-hHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhhee-eeeccCCccHHHHHHHHhhhhHH
Confidence 455788888899999999999 9999999999999998887655432222212111 12234457999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 117 YYTWAIQYLTLLVANIGFILLAARSLKE 144 (445)
Q Consensus 117 ~i~~i~~~~~~~g~~i~y~i~~~~~l~~ 144 (445)
.+..+...+........+.....+.+.+
T Consensus 130 ~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 130 VFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998888888877777777666665543
No 87
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=94.29 E-value=6.4 Score=39.33 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=107.1
Q ss_pred CChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhc-CcccccHHhHHHHhc
Q 013326 36 HDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFH--FID-GKRFIRYRDLMGYLY 111 (445)
Q Consensus 36 ~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~--~~~-~~~~~sy~~l~~~~~ 111 (445)
-.|-..=+...+++.+|-| +.- .||...+.|=..-.+..++..+.-.+- .++.|.. +.. +....+|+.+..
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWr-FPy~~~~nGGgAFll~yli~~l~~GiP-lli~Ef~iGr~~~~~~~~a~~~l~~--- 82 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWR-FPYMAGENGGGAFLLPYLIFLLLVGIP-LLLAEFAIGRRGRKNAVGAFRKLAP--- 82 (439)
T ss_pred hhhHHHHHHHHHHHHhccccccc-CCeEeeecCcchHHHHHHHHHHHHhHH-HHHHHHHhhhhcCCChhHHHHHhcc---
Confidence 3455666777889999988 556 899998888653333333322222222 3344421 111 112356776665
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------C------------CcchhHHHHHHH-HHHHHhhh
Q 013326 112 GREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSD------S------------PVRLQIYILISG-LAFFIFAN 172 (445)
Q Consensus 112 G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~------~------------~~~~~~~~~i~~-~~~~pl~~ 172 (445)
+|+++++-. ......+..+.-|.++.+-.+..+.....+ . ......|.+++. +.....+.
T Consensus 83 ~~~~~~~G~-~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~ 161 (439)
T COG0733 83 KKKWEWIGW-FGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSR 161 (439)
T ss_pred Cccchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 444444322 234445555666666666665555443310 0 000111211111 11111110
Q ss_pred -hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccch---HHHHHHHHHHHHHHh--cccchhhh
Q 013326 173 -LVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDK---IYNAIGAMSAIIVAN--AAGMIPEM 246 (445)
Q Consensus 173 -~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~faf--~~~~~~~i 246 (445)
..+-+++...+-+......++ +++++++......+..++-. .+++++ ..-...++|=..|+. |...+.+.
T Consensus 162 GV~~GIEk~~kimMP~Lfvl~i---~Lvi~~~tLpGA~~G~~f~l-~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitY 237 (439)
T COG0733 162 GVKKGIEKANKIMMPLLFVLFI---ILVIRAVTLPGAMEGLKFLF-KPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITY 237 (439)
T ss_pred hHHhhHHHHHHHHHHHHHHHHH---HHHHHHHcCccHHHHHHHHh-cCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122355555555555444332 33334443321111001100 011111 123467788888888 78888888
Q ss_pred hcccccccccchHHHHHHHHHHHHH
Q 013326 247 QSTLRQPAVMNMRKALYSQYTVGLL 271 (445)
Q Consensus 247 ~~~mk~p~~~~~~~~~~~s~~~~~~ 271 (445)
-+.++++++ ..+........-+.
T Consensus 238 sSYL~k~~~--l~~sa~~v~~~n~~ 260 (439)
T COG0733 238 SSYLSKKSD--LVSSALSIVLLNTL 260 (439)
T ss_pred HhhcCcccc--hhhhHHHHHHHHHH
Confidence 888988776 66554433333333
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.27 E-value=0.87 Score=45.61 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=61.2
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchh
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAI 180 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l 180 (445)
.-..+++++.+|+.|..+..+++.+.|+.++++-....+|.++++.+ ..+.+.|..++.++.+.++ .-.++++
T Consensus 261 ~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-----kisY~~~v~i~~i~S~~ia--n~Gl~~I 333 (427)
T PF05525_consen 261 ELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-----KISYKVWVIIFTIFSFIIA--NLGLDQI 333 (427)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccChHHHHHHHHHHHHHHH--HhCHHHH
Confidence 34678899999999999999999999999999999999999999985 4566778777766666665 3345555
Q ss_pred hHHH
Q 013326 181 RRWL 184 (445)
Q Consensus 181 ~~~s 184 (445)
-..+
T Consensus 334 i~~s 337 (427)
T PF05525_consen 334 IKIS 337 (427)
T ss_pred HHHH
Confidence 4444
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=94.14 E-value=7.1 Score=39.27 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=97.7
Q ss_pred cccHHhHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcc
Q 013326 100 FIRYRDLMGYLYG-REMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMS 178 (445)
Q Consensus 100 ~~sy~~l~~~~~G-~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~ 178 (445)
+.|.+|....-++ +..|++..+.-.+-.+...++.+...+..+..+++- + ...-.++-++++..-. .+-.++
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv----~--~~vgv~ig~ilm~~Yv-v~GGM~ 175 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV----P--YHVGVVIGGILMMVYV-VLGGMK 175 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC----C--ceeehhhHhHHHHHHH-Hhcchh
Confidence 4888887666554 477888777777777777888888888888887741 1 2222233344444444 677888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHc-CCCC----------CCcc-ccccCCccchHHHHHHHHHHHHHHh--cccchh
Q 013326 179 AIRRWLAVSFIITFTYVLILLVILVRD-GTSN----------KSRD-YEIQGSKTDKIYNAIGAMSAIIVAN--AAGMIP 244 (445)
Q Consensus 179 ~l~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~ 244 (445)
...|....--+..+...++.......+ +... ++.+ ....-.+.....+-.+.++. .|+. |..-.|
T Consensus 176 atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl-~~aLm~GTAgLP 254 (529)
T COG4147 176 ATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISL-GFALMVGTAGLP 254 (529)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHH-HHHHHHccCCCC
Confidence 888888766544333322222222222 2110 0110 00100110011123333443 2333 666666
Q ss_pred hhhccc-ccccccchHHHHHHHHHHHHHHHHHHHhHHHhh
Q 013326 245 EMQSTL-RQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWA 283 (445)
Q Consensus 245 ~i~~~m-k~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 283 (445)
.+.-.- .-|+-|.-++++..+..+...+|+..-+.|+.+
T Consensus 255 Hil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 255 HILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred eEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 644322 233333467899999999999999887777544
No 90
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=93.89 E-value=10 Score=40.25 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhhhhhhh-hhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcC-cccccHHhHHHHhcccch
Q 013326 38 SWQQMGFMLVIVFNCGYI-LSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDG-KRFIRYRDLMGYLYGREM 115 (445)
Q Consensus 38 s~~~a~~~l~~~~iG~Gi-Ls~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~-~~~~sy~~l~~~~~G~~g 115 (445)
+......=-+..+.|.-. +- |-|.+--+|...|.++.+++++.+..|+.-+...+...- +.--+|--+ .+.+||-.
T Consensus 116 t~mGVyLPclQnIlGVilFiR-LtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsLGPEF 193 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIR-LTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSLGPEF 193 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-ecccCccc
Confidence 333333344445555443 34 789999999999999999999999999988877654310 011245333 34567777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc-----CC------CCc-chhHHHHHHHHH--HHHhhhhCCCcchh
Q 013326 116 YYYTWAIQYLTLLVANIGFILLAARSLKE-INMVS-----SD------SPV-RLQIYILISGLA--FFIFANLVPTMSAI 180 (445)
Q Consensus 116 ~~i~~i~~~~~~~g~~i~y~i~~~~~l~~-l~~~~-----~~------~~~-~~~~~~~i~~~~--~~pl~~~~~~l~~l 180 (445)
.-.+.++.++-.--+...|++..-+.+-. +++.. ++ ..+ +.+.|..++.++ ++.+. =+|-.+.+
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~-GVK~Vnk~ 272 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFV-GVKFVNKF 272 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 77778888887777788888876666443 33322 00 011 234554444322 22333 45666777
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 013326 181 RRWLAVSFIITFTYVLIL 198 (445)
Q Consensus 181 ~~~s~~~~~~~~~~~~i~ 198 (445)
+.++..+++..++.+...
T Consensus 273 A~vfL~CVILSIlaiyaG 290 (1075)
T KOG2082|consen 273 APVFLACVILSILAIYAG 290 (1075)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 777777777666544333
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.79 E-value=8.3 Score=38.82 Aligned_cols=73 Identities=12% Similarity=-0.009 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhHHHH-Hhhc--hhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 37 DSWQQMGFMLVIVFNCGYILSFSNLIL-VPLG--WKWGILCMFFLAFYSL-YSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 37 ~s~~~a~~~l~~~~iG~GiLs~lP~af-~~~G--~~~g~~~l~~~~~~~~-~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
...+..-+.+..-..|+|=|= .|-.. .++| |..+.+.+++.+..-- .+...+ .+. .-+++|+++++ |
T Consensus 8 ~~~l~iG~~LFamFFGAGNLI-FPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiav---a~~----~g~~~~l~~rv-~ 78 (439)
T PRK15433 8 RDIIALGFMTFALFVGAGNII-FPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVAL---AKV----GGGVDSLSTPI-G 78 (439)
T ss_pred hHHHHHHHHHHHHHhcCcchh-ccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---hhc----CCCHHHHhhhc-c
Confidence 356778889999999999999 76554 4555 7777777777653321 121111 111 13677777776 3
Q ss_pred cchhHH
Q 013326 113 REMYYY 118 (445)
Q Consensus 113 ~~g~~i 118 (445)
|+...+
T Consensus 79 ~~f~~~ 84 (439)
T PRK15433 79 KVAGVL 84 (439)
T ss_pred hHHHHH
Confidence 444433
No 92
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=93.62 E-value=10 Score=39.39 Aligned_cols=88 Identities=11% Similarity=0.167 Sum_probs=43.2
Q ss_pred hCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchH---HHHHHHHHHHHHHh--cccchhhhh
Q 013326 173 LVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKI---YNAIGAMSAIIVAN--AAGMIPEMQ 247 (445)
Q Consensus 173 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~faf--~~~~~~~i~ 247 (445)
..|.+++...+.+......++.+++.++.++......+..++-. .++++++ .-...+++=..|+. |...+...-
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~-~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~ 273 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLF-TPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYG 273 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHH-SB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEe-cCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEc
Confidence 56778877777766654333333333333332211000000000 0111111 12357788899999 788888888
Q ss_pred cccccccccchHHHHH
Q 013326 248 STLRQPAVMNMRKALY 263 (445)
Q Consensus 248 ~~mk~p~~~~~~~~~~ 263 (445)
+.+|+.++ ..|...
T Consensus 274 Sy~~~~~n--~~~~a~ 287 (523)
T PF00209_consen 274 SYNKFKNN--IFRDAL 287 (523)
T ss_dssp TTS-TTS---SHHHHH
T ss_pred CcCCCCcc--ccccce
Confidence 88887665 555443
No 93
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=92.97 E-value=7.4 Score=39.20 Aligned_cols=248 Identities=13% Similarity=0.070 Sum_probs=124.6
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-ccccHHhHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLG--WKWGILCMFFLAFYSLYSQWLLSAFHFIDGK-RFIRYRDLM 107 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G--~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~-~~~sy~~l~ 107 (445)
+..+|+=|+|+-...=....++++..- +.-+--+.| |--+++...+-- .++...++.. ...|. =+.+++-..
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~-ia~s~l~lGLswwq~~~tv~vG~---~~~~~f~~ln-s~~G~~yhIsFpv~s 124 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWM-IAGSALELGLSWWQTWITVWVGY---LFTAIFLVLN-SRPGSDYHISFPVLS 124 (572)
T ss_pred CcccccccHHHHHHHHHhcccccccee-ehhhHHhccCCHHHHHHHHHHHH---HHHHHHHHHc-cCCCcccccceeeee
Confidence 334677888888887777788888777 777777788 333333333221 1122222211 11221 146777778
Q ss_pred HHhcccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----CCcchhHHH--HHHHHHHHHhh
Q 013326 108 GYLYGREMY---YYTWAIQYLTLLVANIGFILLAARSLKEINMVS-------SD----SPVRLQIYI--LISGLAFFIFA 171 (445)
Q Consensus 108 ~~~~G~~g~---~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~-------~~----~~~~~~~~~--~i~~~~~~pl~ 171 (445)
|..||-+|. ++.++...+.-||+.. -..++..+-+++.. ++ .......|+ +++-++.+|+.
T Consensus 125 R~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 125 RSSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eeehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 888877664 3455555555555432 12333333333322 11 111222232 34456666665
Q ss_pred hhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ccccccCCccchHHHHHHHHHHHHHHh--cccchhhhhc
Q 013326 172 NLVPTMSAIRRWLAVSFIITFTYVLILLVILVRDGTSNKS-RDYEIQGSKTDKIYNAIGAMSAIIVAN--AAGMIPEMQS 248 (445)
Q Consensus 172 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~ 248 (445)
+.| .++++++-....+.......-.+++...+.....+ .+-....+.....|.++.++...+=.| ...+.|+..|
T Consensus 202 -~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsR 279 (572)
T KOG2466|consen 202 -WFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSR 279 (572)
T ss_pred -ecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHh
Confidence 443 44444444444333333332333334444322111 110111122223466665555555455 4778899999
Q ss_pred ccccccccchHHHHH--HHHHHHHHHHHHHHhHHHhhcCCcc
Q 013326 249 TLRQPAVMNMRKALY--SQYTVGLLFYYGVTIIGYWAYGSSV 288 (445)
Q Consensus 249 ~mk~p~~~~~~~~~~--~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (445)
--|+|........+. +.+.+..++=++.+..++..||.+.
T Consensus 280 F~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~ 321 (572)
T KOG2466|consen 280 FAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNY 321 (572)
T ss_pred hcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccc
Confidence 889987644444332 3333444444455666788999865
No 94
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=92.37 E-value=4.9 Score=39.71 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=62.7
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchh
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAI 180 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l 180 (445)
.=..+..++.||+.|+++..+++.+.|..++++-...++|..+++.+ ..+...|..++.+..+.++ .-.++++
T Consensus 263 ~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p-----~~SY~~~v~if~i~sflva--n~GL~~I 335 (431)
T COG1114 263 QILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP-----KLSYKTWVIIFTLISFLVA--NLGLEQI 335 (431)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHH--HhhHHHH
Confidence 34567899999999999999999999999999999999999999985 4567778888877777666 3344555
Q ss_pred hHHHHH
Q 013326 181 RRWLAV 186 (445)
Q Consensus 181 ~~~s~~ 186 (445)
-..|.-
T Consensus 336 i~isvP 341 (431)
T COG1114 336 IKISVP 341 (431)
T ss_pred HHHHHH
Confidence 444433
No 95
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=91.81 E-value=15 Score=36.62 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=51.4
Q ss_pred HHHHHhhhhhhhhhhhHHHHHhhchhHHHHH--HHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcccchhHHHHH
Q 013326 44 FMLVIVFNCGYILSFSNLILVPLGWKWGILC--MFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGREMYYYTWA 121 (445)
Q Consensus 44 ~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~--l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~~g~~i~~i 121 (445)
+.+...-+|.|-+. +..+.|--.|--+ .++.+.+..+... ..+.|..-....+..|+.++.++|+.++...+
T Consensus 11 ~lva~a~idPG~i~----t~~~aGa~fGy~LLW~llls~~~~~~~Q--~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~ 84 (390)
T TIGR01197 11 FLMSIAYIDPGNYS----TDLQAGAAAGYKLLWVLLLSNIMALLLQ--RLCARLGVVTGLDLAEVCREHYPKVPRITLWI 84 (390)
T ss_pred HHHHHHhcCchHHH----HHHHHHHHhCHHHHHHHHHHHHHHHHHH--HHHHHheeecCCCHHHHHHHHCCCchHHHHHH
Confidence 34445557777665 3345553333333 2332222222211 11233221223678999999999988877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 122 IQYLTLLVANIGFILLAARSLKEIN 146 (445)
Q Consensus 122 ~~~~~~~g~~i~y~i~~~~~l~~l~ 146 (445)
...+...+...+-....+.-++.++
T Consensus 85 ~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 85 LAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655555555555555555555554
No 96
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=91.12 E-value=18 Score=36.24 Aligned_cols=65 Identities=12% Similarity=-0.127 Sum_probs=44.8
Q ss_pred cccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHH---HHHHHHhhhh
Q 013326 30 SAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYS---QWLLSAFHFI 95 (445)
Q Consensus 30 ~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s---~~ll~~~~~~ 95 (445)
++..+++.|-+||++.-+.+.+|.|-..=..-|..-+|.. ++..|-+.+++..-+ -..|...+|.
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~ 79 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYRE 79 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence 3344467899999999999999999655478888888865 566666666554433 3444444443
No 97
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=89.53 E-value=6.8 Score=39.41 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhh
Q 013326 103 YRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFA 171 (445)
Q Consensus 103 y~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~ 171 (445)
.....++.+|++|+++..+.+.+.|+.++++-....++.+++..+ .+.+.|..+..++.++++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~------isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP------LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999988862 456677777777777777
No 98
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=74.65 E-value=30 Score=36.12 Aligned_cols=238 Identities=12% Similarity=0.082 Sum_probs=119.7
Q ss_pred cCCChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhh--hhcCcccccHHhHHHHh
Q 013326 34 VGHDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFH--FIDGKRFIRYRDLMGYL 110 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~--~~~~~~~~sy~~l~~~~ 110 (445)
.|+..||-....+..+.+|++ +++ +|---.+.|.-.... .+.......++.... ...+.+..+..|--++-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~g-l~~e~~~~G~~~~~~-----~~~~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLG-LPGEGYAYGIQYWFF-----EWNALLSVLLLGWIFIPVFYRLGVTTMYEYLEKR 117 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeec-CchHHHHHHHHHHHH-----HHHHHHHHHhhheEEEEEEEecCeeehhHHHHHH
Confidence 567788888888888888765 566 787777666542111 112222222222211 11122344556667788
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326 111 YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 111 ~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
||+..+.+..+...+..+.-.-.++..-+-.+++... .+.. .-..+..+++..-. ..-.++..-|.-.+-...
T Consensus 118 f~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg----~~~~--l~~~~~~~ic~~YT-~~GGlkaVi~TDv~Q~~i 190 (585)
T KOG2349|consen 118 FGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG----INLY--LIVVILGLICVFYT-ALGGLKAVIWTDVVQTVI 190 (585)
T ss_pred hcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc----cCce--eehHHHHHHHHHHH-HhcCeeEEEEhhHHHHHH
Confidence 8888777766666665555444443333333444432 1211 11122223333333 556666666666666666
Q ss_pred HHHHHHHHHHHHHHcCCC----------CCCcc----ccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccc
Q 013326 191 TFTYVLILLVILVRDGTS----------NKSRD----YEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAV 255 (445)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~ 255 (445)
++..+..+.+.+..+... ....+ ....+...+.+|.++..-.....++ |.+.. .+||.|.-|+.
T Consensus 191 ml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~-~VQR~lsl~sl 269 (585)
T KOG2349|consen 191 MLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQL-IVQRYLSLPSL 269 (585)
T ss_pred HHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHH-HHhHHhccccH
Confidence 554444443333222110 10111 1111112233455554434555666 53332 36888887777
Q ss_pred cchHHHHHHHHH---HHHHHHHHHHhHHHhhcC
Q 013326 256 MNMRKALYSQYT---VGLLFYYGVTIIGYWAYG 285 (445)
Q Consensus 256 ~~~~~~~~~s~~---~~~~~y~~~g~~gy~~fG 285 (445)
++-+++...... +.+.++...|++-|..|-
T Consensus 270 k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 270 KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred HHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 667777765533 333445556666676664
No 99
>TIGR00909 2A0306 amino acid transporter.
Probab=68.63 E-value=1.3e+02 Score=30.04 Aligned_cols=48 Identities=10% Similarity=-0.211 Sum_probs=41.6
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV 148 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 148 (445)
....++.++..|+++..++.+...+.+++++.+.....+..+....+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346678888889999999999999999999999999999999887753
No 100
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=67.06 E-value=62 Score=32.57 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=86.5
Q ss_pred cccccccccchHHHHHHH-HHHHHHHHHHHHhHHHhhcCCcccccccccc-CCccHHHHHHHHHHHHH--HhhhhHhhhh
Q 013326 248 STLRQPAVMNMRKALYSQ-YTVGLLFYYGVTIIGYWAYGSSVSVYLPEQI-GGAKWIKVFVNAAVFLQ--SLVSQHVFIS 323 (445)
Q Consensus 248 ~~mk~p~~~~~~~~~~~s-~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~-~~~~~~~~~~~~~~~~~--~~~s~~l~~~ 323 (445)
.++.+--+++.++.+.-+ .+....-.++....++..||. ..++...++ ...+-............ ...+++....
T Consensus 213 ~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~-~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f 291 (415)
T COG0814 213 PSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGC-FGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIF 291 (415)
T ss_pred hHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHH
Confidence 344443344444433333 333334445566777777765 233333332 22222333333322221 2355666666
Q ss_pred hHHHHHHhhhcc----cc--cccccc-cchHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHhhhhhhhhHHHHHHHHHHH
Q 013326 324 PVYETLDTKLLV----LE--ESMFSR-ENIKRRFFVRGVIFTANIFVAAAFPF-LGDFINVIGSFSLIPLTFVFPSMVFI 395 (445)
Q Consensus 324 p~~~~l~~~~~~----~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lA~~~p~-~~~i~~l~Ga~~~~~l~filP~l~~~ 395 (445)
+.+......+.. .| ++.+.+ +....|..........+.+.++..|. +....+.+|++.....+-++|.++++
T Consensus 292 ~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 292 ALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 666554432221 11 111111 22334667777788888889998885 88999999999999999999999999
Q ss_pred HHhccc
Q 013326 396 KAKAKA 401 (445)
Q Consensus 396 ~~~~~~ 401 (445)
+-++..
T Consensus 372 ~p~~~~ 377 (415)
T COG0814 372 KPRKLI 377 (415)
T ss_pred HHHHhc
Confidence 997643
No 101
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=64.47 E-value=1.9e+02 Score=30.36 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C------CCCcchhHHHHH-HHHHHHHhhhh
Q 013326 103 YRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVS--S------DSPVRLQIYILI-SGLAFFIFANL 173 (445)
Q Consensus 103 y~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~--~------~~~~~~~~~~~i-~~~~~~pl~~~ 173 (445)
+.+..+...+++++.++.+.......++..+.+...+..+..+...- + +...+.....++ .+++...+. +
T Consensus 301 ~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~-~ 379 (557)
T TIGR00906 301 FPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMA-F 379 (557)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHH-H
Confidence 44444444456777888887888888888888887777777665432 1 011112222222 233333344 4
Q ss_pred CCCcchhhHHHHHHHHHHH
Q 013326 174 VPTMSAIRRWLAVSFIITF 192 (445)
Q Consensus 174 ~~~l~~l~~~s~~~~~~~~ 192 (445)
+.+++.+.-+..++.....
T Consensus 380 ~~~~~~l~~l~sig~ll~y 398 (557)
T TIGR00906 380 LFDLKALVDLLSIGTLLAY 398 (557)
T ss_pred HcCHHHHHHHHHHHHHHHH
Confidence 5566666555555555443
No 102
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=63.75 E-value=1.7e+02 Score=29.56 Aligned_cols=216 Identities=14% Similarity=0.054 Sum_probs=104.1
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHH---HHHHHHHHHhhhhcCcccccHHh---
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYS---LYSQWLLSAFHFIDGKRFIRYRD--- 105 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~---~~s~~ll~~~~~~~~~~~~sy~~--- 105 (445)
..++..|.+||.+.-+.+.+|+|=.+=..-|.+-+|.. .+..|=+.+++. -|.=..|...+|...+ +-+|..
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~-~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDK-DGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCC-CCCCcCChH
Confidence 34466788999999999999999665478888888865 466665555443 3333455555543211 111210
Q ss_pred -HHHHhcc-cchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhh
Q 013326 106 -LMGYLYG-REMYYYTWAIQYLTLLV--ANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIR 181 (445)
Q Consensus 106 -l~~~~~G-~~g~~i~~i~~~~~~~g--~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~ 181 (445)
--++-+| ||-..+..+ ..+..+| ........+++.++.-+ +.+.. ..-+...++.-+. .+..+++++
T Consensus 136 yYi~kGl~~r~l~v~FA~-~li~afg~i~n~vQ~NsIa~a~~~af------~~~~~-~~gi~la~l~~~V-I~GGi~rIa 206 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAF-ALIAAFGFIGNGVQSNSIASALANAF------GIPPL-VTGIVLALLVALV-IFGGIKRIA 206 (452)
T ss_pred HHHHhhcCCcHHHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHhc------CCcHH-HHHHHHHHHHHHH-HHcchHHHH
Confidence 1233333 333333332 2222222 22333333333333332 22222 2222223333444 677888887
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCc-c---ccccCCc--cchHH------HHHHHHHHHHHHh--cccchhhh
Q 013326 182 RWLAVSF-IITFTYVLILLVILVRDGTSNKSR-D---YEIQGSK--TDKIY------NAIGAMSAIIVAN--AAGMIPEM 246 (445)
Q Consensus 182 ~~s~~~~-~~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~~~~--~~~~~------~~~~~~~~~~faf--~~~~~~~i 246 (445)
.++-.-+ +..+.|++..++..+.+...-|+. . .+..+.. ...+. .+...+.=-+||- |....|..
T Consensus 207 ~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~a 286 (452)
T COG1115 207 KVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIA 286 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhH
Confidence 7775555 233444444433333333222110 0 0000000 00000 1122233356888 78888888
Q ss_pred hccc--ccccccch
Q 013326 247 QSTL--RQPAVMNM 258 (445)
Q Consensus 247 ~~~m--k~p~~~~~ 258 (445)
+.+- +||.++-+
T Consensus 287 aAaA~~~hPv~QGl 300 (452)
T COG1115 287 AAAAKTDHPVKQGL 300 (452)
T ss_pred HHhhcCCCcHHHhH
Confidence 7765 57765444
No 103
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=60.25 E-value=1.9e+02 Score=28.95 Aligned_cols=77 Identities=18% Similarity=0.064 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHhhhhhhhhhhhHHHH-Hhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326 37 DSWQQMGFMLVIVFNCGYILSFSNLIL-VPLG--WKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR 113 (445)
Q Consensus 37 ~s~~~a~~~l~~~~iG~GiLs~lP~af-~~~G--~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~ 113 (445)
...+..-+.+..-..|+|=+- .|-.. .++| |..+.+.+++.+..-=.-... ... ..+ .+++++.++. ||
T Consensus 5 k~~~~~GfmLFalFFGAGNlI-FPP~LG~~aG~~~~~A~lGFllTgVglPlLgiI--a~a-~~g---~~~~~l~~~i-~~ 76 (431)
T COG1114 5 KDIIALGFMLFALFFGAGNLI-FPPMLGLHAGEHVWPAILGFLLTGVGLPLLGII--AVA-LYG---GGVESLATRI-GP 76 (431)
T ss_pred hhHHHHHHHHHHHHhcCCCcc-CChhhhhhcCccHHHHHHHHHHHHhhHHHHHHH--Hhh-ccC---CCHHHHhhhc-cc
Confidence 345667788889999999988 76544 3444 555666666655322111111 111 111 2688888876 56
Q ss_pred chhHHHHH
Q 013326 114 EMYYYTWA 121 (445)
Q Consensus 114 ~g~~i~~i 121 (445)
|...+..+
T Consensus 77 ~fg~~f~~ 84 (431)
T COG1114 77 WFGVLFAI 84 (431)
T ss_pred hHHHHHHH
Confidence 66555444
No 104
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=60.01 E-value=1.3e+02 Score=27.08 Aligned_cols=40 Identities=8% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccc
Q 013326 297 GGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVL 336 (445)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~ 336 (445)
+..|.+..-.++...+....++|....-+...+...+.++
T Consensus 52 ~~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~ 91 (215)
T TIGR00945 52 SPTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEH 91 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 3456778888899999999999998766656665555543
No 105
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=53.22 E-value=2.6e+02 Score=28.42 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=39.6
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINM 147 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 147 (445)
....|++++-+-||-+++.++..=+...++-+.-.+..+-.++-+..
T Consensus 89 ~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~ 135 (503)
T KOG1291|consen 89 KHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN 135 (503)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 46889999999999999999988888888888888877777776663
No 106
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=52.52 E-value=2.6e+02 Score=28.68 Aligned_cols=43 Identities=12% Similarity=-0.030 Sum_probs=35.2
Q ss_pred HhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013326 104 RDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINM 147 (445)
Q Consensus 104 ~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 147 (445)
.|.+++.+|.+. |.+-+.+.+.++|..-+.+...+..+.....
T Consensus 276 v~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar 318 (479)
T KOG1287|consen 276 VTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR 318 (479)
T ss_pred HHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 457889999999 9999999999999888877777777666554
No 107
>PRK11281 hypothetical protein; Provisional
Probab=49.89 E-value=3.7e+02 Score=30.90 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=25.4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 013326 252 QPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGS 286 (445)
Q Consensus 252 ~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~ 286 (445)
+.+..+-++++..+...+.-..+.+..+||+.+.+
T Consensus 536 ~D~~~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 536 RDSQLHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344456788888888887888888889877764
No 108
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.31 E-value=1.5e+02 Score=23.76 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=44.8
Q ss_pred ccCCCCcccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHH-HHHHHHHhh
Q 013326 24 QESGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLY-SQWLLSAFH 93 (445)
Q Consensus 24 ~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~-s~~ll~~~~ 93 (445)
.++.+.+..-.|..|.-.......-+....-+++ +|.+..-.+|......+++..+++.. +...+.+..
T Consensus 5 p~RLN~ePvV~rGlT~~El~~~~~~~~~~gl~~g-~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlK 74 (111)
T TIGR03750 5 PDRLNREPVVFRGLTADELGVAAGVGLAAGLVLG-LLLALLAGPWALIPTGALLGPILVVLIGGKLLARLK 74 (111)
T ss_pred chhhcCCCceecccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455555556677777666666655555556778 89777767888877777776655555 445555543
No 109
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=47.09 E-value=20 Score=23.42 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCCcc
Q 013326 258 MRKALYSQYTVGLLFYYGVTIIGYWAYGSSV 288 (445)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (445)
+..+..++..+.+++.-+.|..-|.+||...
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4456677778888888888888899999753
No 110
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=46.21 E-value=1e+02 Score=23.28 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=40.1
Q ss_pred HHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccc
Q 013326 229 GAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVS 289 (445)
Q Consensus 229 ~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~ 289 (445)
...|++..+- |...+.+..+.=.+|.+..++.....+++.. +-++.|++.|..||.-.+
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG--~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVG--AVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHH--HHHHHHHHHHHHhcccCC
Confidence 4468888888 9999988888776777754544444444433 445677888888884333
No 111
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=46.03 E-value=61 Score=28.69 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=49.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHhcccc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 372 DFINVIGSFSLIPLTFVFPSMVFIKAKAKAS----------TIQKKAWHWFNILFFTLVTIATTVAAVRIVVK 434 (445)
Q Consensus 372 ~i~~l~Ga~~~~~l~filP~l~~~~~~~~~~----------~~~~~~~~~~~i~~g~~~~~~gt~~si~~i~~ 434 (445)
.-.-+.|++.+.-+..++|+...+..+|++- .|..-....+.-.+|++..+++...|...+.+
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445677888889999999999999987632 24444677888888999999999888888877
No 112
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=43.08 E-value=20 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCcc
Q 013326 261 ALYSQYTVGLLFYYGVTIIGYWAYGSSV 288 (445)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (445)
+..++..+.+++-.+.|..-|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3456677777777888888899999643
No 113
>CHL00020 psbN photosystem II protein N
Probab=41.76 E-value=17 Score=23.36 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCcc
Q 013326 261 ALYSQYTVGLLFYYGVTIIGYWAYGSSV 288 (445)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (445)
+..++..+.+++.-+.|..-|.+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4566677777777778888889999743
No 114
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=40.85 E-value=1.8e+02 Score=24.68 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhH
Q 013326 256 MNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPV 325 (445)
Q Consensus 256 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~ 325 (445)
++.+|.+....-...++..++|+..-..+-|+.+.+=+. .-..|+.....+++.++-+..+..+..|-
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fy--SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMY--SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccc--cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 346788888888888888888888777776654322222 23468888888889999999888888885
No 115
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=40.19 E-value=2e+02 Score=23.35 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=41.1
Q ss_pred cCCCCcccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchh-HHHHHHHHHHHHHHHHH-HHHHHh
Q 013326 25 ESGATSAHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWK-WGILCMFFLAFYSLYSQ-WLLSAF 92 (445)
Q Consensus 25 ~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~-~g~~~l~~~~~~~~~s~-~ll~~~ 92 (445)
|+.+.++.-.+..|.-.-.....-+.+-.-+++ +|.++- .||. .+..++++..+++.+-+ ..+.+.
T Consensus 9 ~RLN~ePvV~rGlT~~El~~~a~~~~~~g~~~g-l~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rl 76 (121)
T PF11990_consen 9 DRLNREPVVFRGLTADELGLAAGVGFVAGLVVG-LPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARL 76 (121)
T ss_pred hhhcCCCCeecCCCHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344455555677777777666666666667888 999987 6665 55666655555555443 444444
No 116
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=39.05 E-value=3.2e+02 Score=25.34 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=29.0
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccC
Q 013326 248 STLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIG 297 (445)
Q Consensus 248 ~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~ 297 (445)
+.+++|+ +++.+.....+..++|...-..+...+++.. +.++...|
T Consensus 19 ~~l~~P~---lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 19 KLILQPG---LRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHhcCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 4566665 7888888888888888777555555554432 33434444
No 117
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=38.54 E-value=4.1e+02 Score=26.38 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013326 103 YRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV 148 (445)
Q Consensus 103 y~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 148 (445)
...+.+...|+++.+++.+...+.++++..+.....+..+..+.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 5677888888999999999999999999999999999999888864
No 118
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=33.65 E-value=3.8e+02 Score=24.61 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHHHHHhcccchhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHH
Q 013326 231 MSAIIVANAAGMIPEMQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAV 310 (445)
Q Consensus 231 ~~~~~faf~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~ 310 (445)
+.++-|-|-+....=++|.-++-+| +..|.+....=++.+...++|+.....+-|...-+=+.|+ ..|+....-+++
T Consensus 61 lMviGfI~l~GeAiL~YR~~r~~~k-~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySL--HSWlGl~~v~ly 137 (245)
T KOG1619|consen 61 LMVIGFIYLQGEAILIYRVFRYTSK-KVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSL--HSWLGLCVVILY 137 (245)
T ss_pred HHHHHHHHhccceeeeeehhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeH--HHHHHHHHHHHH
Confidence 3555555623333335666454443 6999999999999999999999999888777662222233 469988888999
Q ss_pred HHHHhhhhHhhhhhH
Q 013326 311 FLQSLVSQHVFISPV 325 (445)
Q Consensus 311 ~~~~~~s~~l~~~p~ 325 (445)
.++-...+.-+..|.
T Consensus 138 ~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 138 SLQWVFGFFTFLFPG 152 (245)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999888888887764
No 119
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=31.83 E-value=6.1e+02 Score=26.45 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=40.8
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV 148 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 148 (445)
....++-...+||++.........+..+..+++-.+..+.....+...
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 346677788899999999999999999999999999988888877753
No 120
>COG3817 Predicted membrane protein [Function unknown]
Probab=30.69 E-value=2.9e+02 Score=25.59 Aligned_cols=33 Identities=6% Similarity=-0.083 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013326 405 QKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQ 437 (445)
Q Consensus 405 ~~~~~~~~~i~~g~~~~~~gt~~si~~i~~~~~ 437 (445)
|.-++...+-.+|.+....|.--++-.+..++-
T Consensus 166 wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~i 198 (313)
T COG3817 166 WAAILPQMLAALGAVFASAGVGDVIAHLISEII 198 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 444566778889999999998888888888765
No 121
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=30.46 E-value=92 Score=28.41 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhccChHHHHHH---------hhhhhhhhHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHH
Q 013326 355 VIFTANIFVAAAFPFLGDFINV---------IGSFSLIPLTFVFPSMVFIKAKAKA-----STIQKKAWHWFNILFFTLV 420 (445)
Q Consensus 355 ~~~~~~~~lA~~~p~~~~i~~l---------~Ga~~~~~l~filP~l~~~~~~~~~-----~~~~~~~~~~~~i~~g~~~ 420 (445)
..++.++++|..++.++-++.. =||.++.-++++= |...-|.. ...-++|+.|+++++|..+
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 4444455555555555544443 3777776666664 22222211 1123578889999999999
Q ss_pred HHHHHHH--HHHHHHHhcc
Q 013326 421 TIATTVA--AVRIVVKHIQ 437 (445)
Q Consensus 421 ~~~gt~~--si~~i~~~~~ 437 (445)
.+-+++. .||.+=+.+.
T Consensus 237 ~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHhHHHHhhHHHHHh
Confidence 9888764 5666555544
No 122
>PLN02351 cytochromes b561 family protein
Probab=30.28 E-value=4.4e+02 Score=24.29 Aligned_cols=74 Identities=11% Similarity=-0.068 Sum_probs=48.9
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccC-CccHHHHHHHHHHHHHHhhhhHhhhhh
Q 013326 246 MQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIG-GAKWIKVFVNAAVFLQSLVSQHVFISP 324 (445)
Q Consensus 246 i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~s~~l~~~p 324 (445)
+++..+.+++ .+|.+....-...++..++|+.. .|-++ ++...|+. -..|+......++.++-+..+..+..|
T Consensus 72 vYR~~~~~~k--~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P 145 (242)
T PLN02351 72 VHRWLPGSRK--TKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHR 145 (242)
T ss_pred Hhhcccccch--HHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4666665544 58888888877777777777777 44332 22333332 346888878888888888877777666
Q ss_pred H
Q 013326 325 V 325 (445)
Q Consensus 325 ~ 325 (445)
.
T Consensus 146 ~ 146 (242)
T PLN02351 146 G 146 (242)
T ss_pred C
Confidence 4
No 123
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=30.27 E-value=4.5e+02 Score=28.01 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHH--HhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326 39 WQQMGFMLVIVFNCGYILSFSNLIL--VPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR 113 (445)
Q Consensus 39 ~~~a~~~l~~~~iG~GiLs~lP~af--~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~ 113 (445)
||-....++. ...++.. ....+ .+..+...++.+++..+++..+.....+....+ ...+.-+.+.+.|-
T Consensus 357 ww~~~~~~~~--~v~~~~~-~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P---~~~~~~~sqli~g~ 427 (624)
T PF03169_consen 357 WWYLAGLVVS--FVLAIIV-VEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINP---VSGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHHHH--HHHHHHH-HhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCc---chhhhHHHHHHHHH
Confidence 3443333333 3344556 67777 445565555556665666666666555543211 24455566665554
No 124
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.40 E-value=4.3e+02 Score=23.89 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=52.5
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhH
Q 013326 247 QSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPV 325 (445)
Q Consensus 247 ~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~ 325 (445)
++..++++| +..|.+....-...++...+|+.....+-|+.+..+-.-..-..|+.....+++.++.+..+..+..|-
T Consensus 46 yr~~~~~~k-~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 46 YRVFRNTRK-KRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred hccCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 343444333 346778888888888888888776666656554444333444578888888888888888887776664
No 125
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.42 E-value=3.3e+02 Score=22.83 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhH
Q 013326 257 NMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPV 325 (445)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~ 325 (445)
+.+|.+....-...++..++|+..-..+-|+.+-+=+.++ ..|+.....+++.++.+..+..+..|-
T Consensus 38 ~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~Sl--HSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 38 EVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSL--HSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccH--HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3677888888888888888888766666554432222223 368888888888888888877676674
No 126
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=26.75 E-value=6.8e+02 Score=25.36 Aligned_cols=46 Identities=13% Similarity=-0.026 Sum_probs=41.0
Q ss_pred HHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013326 103 YRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV 148 (445)
Q Consensus 103 y~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 148 (445)
..++.+..+|+++..++.+...+..+++..++....++.+....++
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ard 311 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKD 311 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6678889999999999999999999999999999999998877653
No 127
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.19 E-value=3.9e+02 Score=22.38 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHhhcCCcccccccccc-CCccHHHHHHHHHHHHHHhhhhHhhhhhH
Q 013326 257 NMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQI-GGAKWIKVFVNAAVFLQSLVSQHVFISPV 325 (445)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~s~~l~~~p~ 325 (445)
+..|.+....-...++-..+|+..-..+-++.+ + .++ .-..|+.....+++.++.+..+..+..|-
T Consensus 38 ~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~--~-~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 38 RSTKILHGLLHIMALVISLVGLVAVFDYHQANG--Y-PDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--C-CccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456668888888888888888887766665532 2 233 23468888888888899999888887774
No 128
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.90 E-value=1.6e+02 Score=24.67 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 403 TIQKKAWHWFNILFFTLVTIATTVAAVR 430 (445)
Q Consensus 403 ~~~~~~~~~~~i~~g~~~~~~gt~~si~ 430 (445)
++.++..|+.+-.++++.++.|.++..+
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~ 64 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFD 64 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568888888888888888877654
No 129
>COG4709 Predicted membrane protein [Function unknown]
Probab=24.85 E-value=4.3e+02 Score=23.29 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHH
Q 013326 38 SWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFL 78 (445)
Q Consensus 38 s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~ 78 (445)
+..++..++ +|.|+++ .|.. .+++.+.++.++-
T Consensus 77 n~~~aii~~----~~L~~~~-v~i~---Lpl~~~vi~~via 109 (195)
T COG4709 77 NVRRAIIAL----IGLGLLA-VIIG---LPLLIGVILFVIA 109 (195)
T ss_pred chHHHHHHH----HHHHHHH-HHHH---HHHHHHHHHHHHH
Confidence 444555544 3455555 4443 2333344444443
No 130
>PHA03048 IMV membrane protein; Provisional
Probab=24.75 E-value=2.4e+02 Score=21.46 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHHHHh-cccchhhhhcccccccccchHHHH-HHHHHHHHHHHHHHHhHHHhhcCCcc
Q 013326 229 GAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKAL-YSQYTVGLLFYYGVTIIGYWAYGSSV 288 (445)
Q Consensus 229 ~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~-~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (445)
...|++..+- |...+.+..+. | |+.. -.|++ ..++ ..-+-+++|++-|..||..-
T Consensus 15 li~GIiLL~~aCIfAfidfsK~-k-~~~~-~wRalsii~F--Ilgivl~lG~~ifsmy~r~C 71 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKN-K-ATVT-VWRALSGIAF--VLGIVMTIGMLIYSMWGRYC 71 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcC-C-Ccch-hHHHHHHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 4468888888 99999888887 4 3332 34443 3333 33345677888888888543
No 131
>COG4478 Predicted membrane protein [Function unknown]
Probab=22.80 E-value=3.5e+02 Score=23.86 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=39.0
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHHH--hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013326 370 LGDFINVIGSFSLIPLTFVFPSMVFIKA--KAKASTIQKKAWHWFNILFFTLVTIATTVAAVRIVVKHIQ 437 (445)
Q Consensus 370 ~~~i~~l~Ga~~~~~l~filP~l~~~~~--~~~~~~~~~~~~~~~~i~~g~~~~~~gt~~si~~i~~~~~ 437 (445)
|.++-.+.=-+....+.+.+|.+--... .+++..+.-+.....+.++++.+|+.+....-++....++
T Consensus 84 FadVk~Lf~lv~~v~i~i~lp~l~~fi~r~ik~~~~s~lk~sli~l~v~pliIGv~~~ligF~~fF~~FH 153 (210)
T COG4478 84 FADVKNLFHLVQIVAIFILLPFLPLFIYRFIKKRFLSYLKKSLILLLVLPLIIGVAASLIGFDIFFTLFH 153 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4444444444444445555664432222 2333343445556778888999988887777777666554
No 132
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=22.68 E-value=7.9e+02 Score=24.64 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=33.1
Q ss_pred cHHhHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013326 102 RYRDLMGYL--YGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINM 147 (445)
Q Consensus 102 sy~~l~~~~--~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 147 (445)
...++.+.. +|+++..++.+...+...++..++....+..+..+..
T Consensus 265 p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ar 312 (445)
T PRK11357 265 PISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAK 312 (445)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 456666653 7887777777777777888888877777777766654
No 133
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=22.61 E-value=1.7e+02 Score=23.61 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=8.7
Q ss_pred HHHHHhccccccccc
Q 013326 430 RIVVKHIQDYSFFAD 444 (445)
Q Consensus 430 ~~i~~~~~~~~~f~~ 444 (445)
+.+.+++++-+||++
T Consensus 44 ~~ll~~i~~~~~Fs~ 58 (136)
T PF11188_consen 44 RRLLRNIQKGKPFSP 58 (136)
T ss_pred HHHHHHHHCCCcchH
Confidence 555555665566654
No 134
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=8.7e+02 Score=25.31 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-----C-CCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 013326 127 LLVANIGFILLAARSLKEINMVSS-----D-SPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIITFTYVLILLV 200 (445)
Q Consensus 127 ~~g~~i~y~i~~~~~l~~l~~~~~-----~-~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 200 (445)
....+..+.+-.+|....++.... + ....+..|.++.+++-..+. +...++.++..+.++. +-+..+.+.+.
T Consensus 411 ~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~lL-~~ggl~aLqt~~ii~a-lPF~~vll~~~ 488 (537)
T COG1292 411 ALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVLL-LIGGLEALQTAAIITA-LPFSLVLLVMM 488 (537)
T ss_pred HHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH-ccHHHHHHHHH
Confidence 334456667777777777766541 1 12335567777766666666 6667888877665553 22333444555
Q ss_pred HHHHcC
Q 013326 201 ILVRDG 206 (445)
Q Consensus 201 ~~~~~~ 206 (445)
++..++
T Consensus 489 ~sl~k~ 494 (537)
T COG1292 489 FSLIKD 494 (537)
T ss_pred HHHHHH
Confidence 566665
No 135
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=22.12 E-value=1.7e+02 Score=22.88 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccccchHH-HHHHHHHHHHHHHHHHHHHH
Q 013326 388 VFPSMVFIKAKAKASTIQK-KAWHWFNILFFTLVTIATTV 426 (445)
Q Consensus 388 ilP~l~~~~~~~~~~~~~~-~~~~~~~i~~g~~~~~~gt~ 426 (445)
++|-.=-+...|+++...| +++.-.+.++|++++.+-|.
T Consensus 7 LIPfAKEmlaQkPsrkmvKlYvLGSvLA~~Gvv~GLVEtV 46 (102)
T PF15103_consen 7 LIPFAKEMLAQKPSRKMVKLYVLGSVLAFFGVVIGLVETV 46 (102)
T ss_pred HHHHHHHHHhcCCCCCeEeeehhhhHHHHHHHHHHHHHHH
Confidence 4565555555665554433 24455566667666665554
No 136
>PLN02810 carbon-monoxide oxygenase
Probab=20.98 E-value=6.5e+02 Score=23.03 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=53.2
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccHHHHHHHHHHHHHHhhhhHhhhhhH
Q 013326 246 MQSTLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKWIKVFVNAAVFLQSLVSQHVFISPV 325 (445)
Q Consensus 246 i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~p~ 325 (445)
.++..+.++ +.+|.+....-...++..++|+.....+-|+..-+=+.+ -..|+......++.++-+..+..+..|-
T Consensus 68 ~Yr~~~~~k--~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlyS--LHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 68 SYKSLPLKK--EVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYS--LHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred Hhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceee--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345554443 378899999888888888999988888776543222222 2368888888888888888887776663
No 137
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=20.55 E-value=7e+02 Score=23.22 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=29.5
Q ss_pred CCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhccc
Q 013326 297 GGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVL 336 (445)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~ 336 (445)
...+.+..-.++...+.++.+.|...+-+...+...+.++
T Consensus 63 ~~~e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~ 102 (258)
T PRK10921 63 DVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH 102 (258)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 3346777778888999999999998776666666665553
Done!