Query 013326
Match_columns 445
No_of_seqs 139 out of 1203
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 08:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 3E-15 1E-19 150.5 33.3 357 32-401 5-379 (445)
2 3gia_A Uncharacterized protein 99.6 4.2E-12 1.4E-16 127.5 34.6 239 33-286 4-249 (444)
3 4djk_A Probable glutamate/gamm 99.4 4.3E-10 1.5E-14 114.8 32.9 246 31-287 7-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.9 4.2E-06 1.4E-10 84.8 31.5 236 32-281 22-275 (501)
5 3dh4_A Sodium/glucose cotransp 97.9 0.023 7.9E-07 57.7 34.0 151 34-195 19-171 (530)
6 2xq2_A Sodium/glucose cotransp 97.8 0.05 1.7E-06 56.0 33.6 150 34-194 48-199 (593)
7 2a65_A Leutaa, Na(+):neurotran 95.0 3.3 0.00011 41.5 33.4 112 173-287 183-309 (519)
8 3gia_A Uncharacterized protein 50.0 1.5E+02 0.0052 28.1 12.1 48 101-148 258-305 (444)
9 4b4a_A TATC, SEC-independent p 49.1 1.4E+02 0.0048 26.4 13.8 97 297-398 56-175 (249)
10 4ain_A Glycine betaine transpo 35.7 2.2E+02 0.0075 28.3 10.4 40 102-141 181-221 (539)
11 3l1l_A Arginine/agmatine antip 32.6 3.2E+02 0.011 25.7 16.9 49 100-148 259-307 (445)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.75 E-value=3e-15 Score=150.53 Aligned_cols=357 Identities=10% Similarity=-0.015 Sum_probs=205.7
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhc
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLY 111 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~ 111 (445)
+++|+.+.+++....+++++|+|++. +|...++.|.. +++..++.++..........|.....++ .-...+..++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~-~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFL-LPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHH-HHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHh-hHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence 34578999999999999999999999 99999999974 6777777777777777777775544322 335667789999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHH-HHHHHHhhhhCCCcchhhHHHHHHHHH
Q 013326 112 GREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILIS-GLAFFIFANLVPTMSAIRRWLAVSFII 190 (445)
Q Consensus 112 G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~-~~~~~pl~~~~~~l~~l~~~s~~~~~~ 190 (445)
||+..++......+........+....++.+..+++.. ......+.... .++++... ..+..+...+++......
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i-n~~g~~~~~~~~~~~~~~ 157 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---KDPWVLTITCVVVLWIFVLL-NIVGPKMITRVQAVATVL 157 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG---GSHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc---cccHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHH
Confidence 99999999988888877777777777777776554321 10111121211 12222222 455666666666555444
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHHHHHH
Q 013326 191 TFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQYTVG 269 (445)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s~~~~ 269 (445)
.+..++..++..+........ ..+..+....+...+..++....|+| |........+|+|||+| +.+|++..+..+.
T Consensus 158 ~i~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~~~~ 235 (445)
T 3l1l_A 158 ALIPIVGIAVFGWFWFRGETY-MAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIA 235 (445)
T ss_dssp HHHHHHHHHHTTSTTCCCCCC-CCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhc-ccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-cccHHHHHHHHHH
Confidence 433222222222222111110 00111111122446778889999999 99999999999999975 5999999999999
Q ss_pred HHHHHHHHhHHHhhcCCccc----cccccccC--CccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccc-ccccc
Q 013326 270 LLFYYGVTIIGYWAYGSSVS----VYLPEQIG--GAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLE-ESMFS 342 (445)
Q Consensus 270 ~~~y~~~g~~gy~~fG~~~~----~~il~~~~--~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~-~~~~~ 342 (445)
.++|+..........+.+.- ++...-+. ..++...+..+...+..+.+..-.....-+.+...-+++. .+.++
T Consensus 236 ~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~ 315 (445)
T 3l1l_A 236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFA 315 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGG
T ss_pred HHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 99999988887776664321 11111111 0123444455555555555443333333233222211100 01121
Q ss_pred c---cchHHHHHHHHHHHHHHHHHHHh--cc----ChHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc
Q 013326 343 R---ENIKRRFFVRGVIFTANIFVAAA--FP----FLGDFINVIGSFSLIPLTFVFPSMVFIKAKAKA 401 (445)
Q Consensus 343 ~---~~~~~~~~~~~~~~~~~~~lA~~--~p----~~~~i~~l~Ga~~~~~l~filP~l~~~~~~~~~ 401 (445)
+ +..+.+...-.. +++.++... .| .++.+.++.+ ....+.+.++++.+++.+|++
T Consensus 316 ~~~~~~~P~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 316 RVNKAGTPVAGLIIVG--ILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp CCCTTCCCHHHHHHHH--HHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred hcCCCCCCHHHHHHHH--HHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 1 111122221111 112222222 22 3566666655 345788999999999887654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.59 E-value=4.2e-12 Score=127.46 Aligned_cols=239 Identities=13% Similarity=0.022 Sum_probs=157.5
Q ss_pred ccCCChHHHHHHHHHHhhhhhhhhhhhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhc
Q 013326 33 TVGHDSWQQMGFMLVIVFNCGYILSFSN-LILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLY 111 (445)
Q Consensus 33 ~~~~~s~~~a~~~l~~~~iG~GiLs~lP-~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~ 111 (445)
++|+.+.++.....+++++|+|++. .| .+.++.|. ...+..++.+++.......+.|.....++ .-...+..++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~-~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFS-IFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTT-SHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHh
Confidence 4578999999999999999999999 76 45566676 56777777788888887778886544322 334557789999
Q ss_pred ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHH---HHHHHHHHhhhhCCCcchhhHHHHH
Q 013326 112 GRE--MYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVRLQIYIL---ISGLAFFIFANLVPTMSAIRRWLAV 186 (445)
Q Consensus 112 G~~--g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~---i~~~~~~pl~~~~~~l~~l~~~s~~ 186 (445)
|++ +.++ .....+........+....++.+..+++.. ....+.. +..++++... ..+..+...++...
T Consensus 81 G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i-n~~g~~~~~~~~~~ 153 (444)
T 3gia_A 81 GDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAP-----INTFNIAITEIGIVAFFTAL-NFFGSKAVGRAEFF 153 (444)
T ss_dssp CSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHH
T ss_pred CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CchHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHH
Confidence 996 3433 445555555667777777888887766421 1112211 1112222233 45666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchHHHHHHH
Q 013326 187 SFIITFTYVLILLVILVRDGTSNKSRDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMRKALYSQ 265 (445)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~~~~~~s 265 (445)
.....+..++..++..+...... +... .....++.+++.++....|+| |........+|+|||+| +.+|++..+
T Consensus 154 ~~~~~i~~~~~~ii~~~~~~~~~---~~~~-~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r-~ip~ai~~~ 228 (444)
T 3gia_A 154 IVLVKLLILGLFIFAGLITIHPS---YVIP-DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK-NVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCGG---GTSC-CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcChh---hcCC-CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc-chhHHHHHH
Confidence 55444433333333333332111 1111 112233456777888889999 99999999999999975 699999999
Q ss_pred HHHHHHHHHHHHhHHHhhcCC
Q 013326 266 YTVGLLFYYGVTIIGYWAYGS 286 (445)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fG~ 286 (445)
..++.++|....+......+.
T Consensus 229 ~~~~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 229 ILIVMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHhCCCH
Confidence 999999999888776666553
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.41 E-value=4.3e-10 Score=114.79 Aligned_cols=246 Identities=9% Similarity=0.010 Sum_probs=139.0
Q ss_pred ccccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHhhh--hcCcccccHHhHH
Q 013326 31 AHTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFLAFYSL-YSQWLLSAFHF--IDGKRFIRYRDLM 107 (445)
Q Consensus 31 ~~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~~~~~~-~s~~ll~~~~~--~~~~~~~sy~~l~ 107 (445)
++.+|+.+.++.....++.++| +.. +|. .+..|.. .++..++.+++.. .....+.|... .. + .-......
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~-~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~-P-~GG~y~~~ 79 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYE-YPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGW-E-EGGVFAWV 79 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGG-HHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hch-hHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccC-C-CCChhhhH
Confidence 4456889999999999999996 567 775 4667754 3333333333322 24555566444 32 2 34455778
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHH
Q 013326 108 GYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEIN--MVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLA 185 (445)
Q Consensus 108 ~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~--~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~ 185 (445)
++.+||+.+++......+.......++....++.+..++ +..+...+....+ .+..++++... ..+..+...++..
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~i-n~~g~~~~~~~~~ 157 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIA-ALIILWALALT-QFGGTKYTARIAK 157 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHH-HHHHHHHHHHH-HHTCSSSHHHHTH
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHH-HHHHHHHHHHH-HHhChHHHHHHHH
Confidence 999999888888888888777777777777777765543 2111111111111 11112222233 4556666666655
Q ss_pred HHHHHH-HHHHHHHHHHHHHcCCCCCC----ccccccCCccchHHHHHHHHHHHHHHh-cccchhhhhcccccccccchH
Q 013326 186 VSFIIT-FTYVLILLVILVRDGTSNKS----RDYEIQGSKTDKIYNAIGAMSAIIVAN-AAGMIPEMQSTLRQPAVMNMR 259 (445)
Q Consensus 186 ~~~~~~-~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~mk~p~~~~~~ 259 (445)
...... +..+++.+...+......++ .+.....++..+ .....++...+|+| |........+|+|||+| +.+
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k-~ip 235 (511)
T 4djk_A 158 VGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSK-VGTLVVFVAFILSYMGVEASATHVNEMSNPGR-DYP 235 (511)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTS-TTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTT-THH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCccc-chHHHHHHHHHHHHhhHHHHHHHHHhccCccc-chh
Confidence 543321 11111122222221111000 010000011110 12233457789999 99999999999999986 699
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCc
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYGSS 287 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (445)
|++..++.+..++|++..+.-....+++
T Consensus 236 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 236 LAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9999999999999999988877777654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.87 E-value=4.2e-06 Score=84.80 Aligned_cols=236 Identities=9% Similarity=-0.016 Sum_probs=133.6
Q ss_pred cccCCChHHHHHHHHHHhhhhhhhhhhhHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHH
Q 013326 32 HTVGHDSWQQMGFMLVIVFNCGYILSFSNLILVPLG--WKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGY 109 (445)
Q Consensus 32 ~~~~~~s~~~a~~~l~~~~iG~GiLs~lP~af~~~G--~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~ 109 (445)
.++|+.++++-+..-++..++.+.+. +...+.. | +.-+++..++..++...-..+....-. +...+|.++.+.
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~-~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~---~~Gl~~~v~~R~ 96 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFI-AAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAI---RWGINFTVAARM 96 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHH-HHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHH---HHCCCHHHHTTT
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHh---hcCCChhhhhHh
Confidence 34577788888888888888877777 6655554 5 344444444433333322222222221 223679999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-hhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHH
Q 013326 110 LYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMVSSDSPVR-LQIYILISGLAFFIFANLVPTMSAIRRWLAVSF 188 (445)
Q Consensus 110 ~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~ 188 (445)
.||++|..+..+...+.+.|-...-....++.+..++.... ... ...+.+++.++.++.. ....+.++++.....
T Consensus 97 ~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~--g~~~~~v~~~i~~~l~~~~~--~~G~~~i~~~~~~~~ 172 (501)
T 2jln_A 97 PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT--GFTNLPLWIVIFGAIQVVTT--FYGITFIRWMNVFAS 172 (501)
T ss_dssp TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888764321 111 2344555555555554 556777777777766
Q ss_pred HHHHHHHHHHHHHHHHcCCC--CCCccccccCCccchHHHHHHHHHHHHHHh---cccchhhhhcccccccc---cc---
Q 013326 189 IITFTYVLILLVILVRDGTS--NKSRDYEIQGSKTDKIYNAIGAMSAIIVAN---AAGMIPEMQSTLRQPAV---MN--- 257 (445)
Q Consensus 189 ~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf---~~~~~~~i~~~mk~p~~---~~--- 257 (445)
...++.++...+..+.+... .+..+.+. + ...+.+..++... .++ ...+.++..+++|++++ ++
T Consensus 173 p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~---~-~~~~~f~~ai~~~-~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~ 247 (501)
T 2jln_A 173 PVLLAMGVYMVYLMLDGADVSLGEVMSMGG---E-NPGMPFSTAIMIF-VGGWIAVVVSIHDIVKECKVDPNASREGQTK 247 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHTTCCC---S-SCCSCHHHHHHHH-HTTTHHHHTTTHHHHTTBCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhccCC---c-cchHHHHHHHHHH-HHHHHHHHhccCcccccCCCCccccccchhh
Confidence 55544443333333333211 00000000 0 1112333333332 223 35678899999987764 11
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHhHHH
Q 013326 258 ----MRKALYSQYTVGLLFYYGVTIIGY 281 (445)
Q Consensus 258 ----~~~~~~~s~~~~~~~y~~~g~~gy 281 (445)
.......+..+...+...+|...-
T Consensus 248 ~~~~~~~g~~lG~~i~~~~~~~lG~~~~ 275 (501)
T 2jln_A 248 ADARYATAQWLGMVPASIIFGFIGAASM 275 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233445555555555565433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.95 E-value=0.023 Score=57.66 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=82.6
Q ss_pred cCCChHHHHHHHHHHhhhhhh-hhhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGY-ILSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~G-iLs~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
.|+.++|...+.+..+.+++. .+. +|-...+.|+........ .++........+...++. .+..|.+|.-++-||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG-~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~--~~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIG-MSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE--KGIYTIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTH-HHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH--TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHcC
Confidence 578899999999988888765 456 888888888753211111 011111112222222222 346899999999999
Q ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYLT-LLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~~g~~i~~i~~~~~-~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
++.+.+..+...+. ....+.+-+...+..++.++ ..+...-+++.++++..-. ..--++...+.-.+-.+.+
T Consensus 95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~------Gi~~~~~i~i~~~i~~~Yt-~~GGl~aV~~TD~iQ~~im 167 (530)
T 3dh4_A 95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL------GIPLMYSILGLALFALVYS-IYGGLSAVVWTDVIQVFFL 167 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHTT-C------CCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 98888777654432 22223333334455555554 2333333344444445555 6777888888877776665
Q ss_pred HHHH
Q 013326 192 FTYV 195 (445)
Q Consensus 192 ~~~~ 195 (445)
+...
T Consensus 168 ~~g~ 171 (530)
T 3dh4_A 168 VLGG 171 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.77 E-value=0.05 Score=55.99 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=81.5
Q ss_pred cCCChHHHHHHHHHHhhhhhhh-hhhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccHHhHHHHhcc
Q 013326 34 VGHDSWQQMGFMLVIVFNCGYI-LSFSNLILVPLGWKWGILCMFFLAFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYG 112 (445)
Q Consensus 34 ~~~~s~~~a~~~l~~~~iG~Gi-Ls~lP~af~~~G~~~g~~~l~~~~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G 112 (445)
.|+.++|.....+..+.+++.. +. .|-...+.|+........ .++......+.+..-.+. .+..|.+|.-++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG-~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r--~~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIG-MSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE--KGIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHH-HHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH--TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhh-HhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh--CCCCCcHHHHHHHcc
Confidence 5778899999988877776654 56 888877888642211110 011111112222222222 345899999999999
Q ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHhhhhCCCcchhhHHHHHHHHHH
Q 013326 113 REMYYYTWAIQYL-TLLVANIGFILLAARSLKEINMVSSDSPVRLQIYILISGLAFFIFANLVPTMSAIRRWLAVSFIIT 191 (445)
Q Consensus 113 ~~g~~i~~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~l~~l~~~s~~~~~~~ 191 (445)
++.+.+..+...+ ..+.....-+...+..++.++. .+...-+++.++++.... ..-.++...+.-.+-.+..
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G------i~~~~~i~i~~~i~~~Yt-~~GGl~av~~TD~iQ~iim 196 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG------IPLMYSILGLALFALVYS-IYGGLSAVVWTDVIQVFFL 196 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHH-HTTC---CCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------ccHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHH
Confidence 9888777655443 2222233333445666666652 233333344455555555 7778888877776666555
Q ss_pred HHH
Q 013326 192 FTY 194 (445)
Q Consensus 192 ~~~ 194 (445)
+..
T Consensus 197 l~~ 199 (593)
T 2xq2_A 197 VLG 199 (593)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.02 E-value=3.3 Score=41.48 Aligned_cols=112 Identities=14% Similarity=0.106 Sum_probs=56.8
Q ss_pred hCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCccccccCCccchH---HHHHHHHHHHHHHh--cccc
Q 013326 173 LVPTM-SAIRRWLAVSFIITFTYVLILLVILVRDGT----SNKSRDYEIQGSKTDKI---YNAIGAMSAIIVAN--AAGM 242 (445)
Q Consensus 173 ~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~faf--~~~~ 242 (445)
..|.. +.....+.+-....++.+++.++.++.... ..+..++-. .++++++ .-...+.+=+.|+. |...
T Consensus 183 i~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~-~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~ 261 (519)
T 2a65_A 183 LIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLW-TPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261 (519)
T ss_dssp HTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHH-SCCTTSTTCHHHHHHHHHHHHHHHTTTSSH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh-cCCHHHhCCHHHHHHHHHHHHHHhHHHHhH
Confidence 66766 556666665554444334444444443221 000000000 1122222 12467788899999 7888
Q ss_pred hhhhhcccccccccchHHHHHHHHHHHHHH-----HHHHHhHHHhhcCCc
Q 013326 243 IPEMQSTLRQPAVMNMRKALYSQYTVGLLF-----YYGVTIIGYWAYGSS 287 (445)
Q Consensus 243 ~~~i~~~mk~p~~~~~~~~~~~s~~~~~~~-----y~~~g~~gy~~fG~~ 287 (445)
+...-+.+|++++ ..+........-+.. ..+++.+||.++|.+
T Consensus 262 ~ity~SY~~~~~n--~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 262 IITYASYVRKDQD--IVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp HHHHHTTSCTTSC--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HhhhhcccCCCcC--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 8888888887765 444433222222222 234445677666644
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=50.00 E-value=1.5e+02 Score=28.10 Aligned_cols=48 Identities=8% Similarity=-0.128 Sum_probs=40.3
Q ss_pred ccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013326 101 IRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV 148 (445)
Q Consensus 101 ~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 148 (445)
....++.+..+|+++..++.+...+..+++..+.....+..+..+...
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 346678888889999999999999999999999888888888877654
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=49.14 E-value=1.4e+02 Score=26.37 Aligned_cols=97 Identities=10% Similarity=0.242 Sum_probs=57.1
Q ss_pred CCccHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHh--c-------
Q 013326 297 GGAKWIKVFVNAAVFLQSLVSQHVFISPVYETLDTKLLVLEESMFSRENIKRRFFVRGVIFTANIFVAAA--F------- 367 (445)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~s~~l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~--~------- 367 (445)
+..+.+..-.++.....++.+.|...+-+...+...+.++| ++ ....-......+.......|.. .
T Consensus 56 ~~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~E-rr----~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl 130 (249)
T 4b4a_A 56 SPTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHE-KR----AFIPLLLGSILLFMLGALFAYFIVLPLALKFL 130 (249)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCC-TT----TTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777788888899999999986655555555555433 22 1222233444445555455542 2
Q ss_pred -----------c--ChHHHHHHhhhhhh-hhHHHHHHHHHHHHHh
Q 013326 368 -----------P--FLGDFINVIGSFSL-IPLTFVFPSMVFIKAK 398 (445)
Q Consensus 368 -----------p--~~~~i~~l~Ga~~~-~~l~filP~l~~~~~~ 398 (445)
| ++++-++++-.+.- ..++|-+|.++++-.+
T Consensus 131 ~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 131 LGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp TCSSSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HhcchhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45555555544432 3377888998877664
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=35.70 E-value=2.2e+02 Score=28.32 Aligned_cols=40 Identities=10% Similarity=-0.228 Sum_probs=26.7
Q ss_pred cHHhHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 102 RYRDLMGY-LYGREMYYYTWAIQYLTLLVANIGFILLAARS 141 (445)
Q Consensus 102 sy~~l~~~-~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~ 141 (445)
=|+=++++ .-|+.|+.+=.+.++.+.+|...+.=....+.
T Consensus 181 l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi 221 (539)
T 4ain_A 181 FVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQI 221 (539)
T ss_dssp GHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 36777877 77888887766666677777766655444443
No 11
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=32.62 E-value=3.2e+02 Score=25.70 Aligned_cols=49 Identities=16% Similarity=-0.011 Sum_probs=43.2
Q ss_pred cccHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013326 100 FIRYRDLMGYLYGREMYYYTWAIQYLTLLVANIGFILLAARSLKEINMV 148 (445)
Q Consensus 100 ~~sy~~l~~~~~G~~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 148 (445)
.....++.+..+|+++..++.+...+..+++..++....+..+..+...
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567899999999999999999999999999999999999988887653
Done!