Query 013326
Match_columns 445
No_of_seqs 139 out of 1203
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 08:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013326.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013326hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 90.2 7.4 0.00054 36.4 38.1 107 38-146 6-116 (509)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 11.2 1.6E+02 0.011 17.8 4.0 41 260-301 6-46 (57)
3 d1rh5b_ f.23.28.1 (B:) Preprot 6.0 2.2E+02 0.016 17.1 2.9 31 249-283 14-44 (56)
4 d1nekd_ f.21.2.2 (D:) Succinat 4.2 5.4E+02 0.039 17.2 6.0 29 246-277 78-106 (113)
5 d1jb0l_ f.31.1.1 (L:) Photosys 3.7 7.3E+02 0.053 17.8 5.4 23 228-250 123-146 (151)
6 d1sg1x4 g.24.1.1 (X:138-161) L 3.3 1.6E+02 0.012 14.1 0.5 11 435-445 11-21 (26)
7 d2e74f1 f.23.25.1 (F:1-32) Pet 3.3 3.6E+02 0.026 13.5 1.9 10 66-75 18-27 (32)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.1 8.4E+02 0.061 19.0 5.4 27 54-81 15-41 (248)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 3.0 6.7E+02 0.049 16.2 7.3 83 258-340 4-101 (103)
10 d1q90r_ f.23.12.1 (R:) ISP sub 2.7 5E+02 0.037 14.1 2.5 20 376-395 17-36 (39)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=90.21 E-value=7.4 Score=36.39 Aligned_cols=107 Identities=7% Similarity=-0.063 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHhhchhHHHHHHHHH----HHHHHHHHHHHHHhhhhcCcccccHHhHHHHhccc
Q 013326 38 SWQQMGFMLVIVFNCGYILSFSNLILVPLGWKWGILCMFFL----AFYSLYSQWLLSAFHFIDGKRFIRYRDLMGYLYGR 113 (445)
Q Consensus 38 s~~~a~~~l~~~~iG~GiLs~lP~af~~~G~~~g~~~l~~~----~~~~~~s~~ll~~~~~~~~~~~~sy~~l~~~~~G~ 113 (445)
|..+-++..++..+|.|-+=-.||...+-|=..-.+..+++ +.=..+.=..+.+..+. .....++.+.....++
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~--g~i~~~~~i~~~~~~~ 83 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA--QGHGTTPAIFYLLWRN 83 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TTCCSHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CcccHHHHHHHHhccC
Confidence 45778888999999997554389997665422222322222 22122222223332222 1245677777666544
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013326 114 EMYYYTWAIQYLTLLVANIGFILLAARSLKEIN 146 (445)
Q Consensus 114 ~g~~i~~i~~~~~~~g~~i~y~i~~~~~l~~l~ 146 (445)
+....+.....+..+..++-|.+..+..+..+.
T Consensus 84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~ 116 (509)
T d2a65a1 84 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAI 116 (509)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322333444455555566667777666655444
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.19 E-value=1.6e+02 Score=17.81 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCccccccccccCCccH
Q 013326 260 KALYSQYTVGLLFYYGVTIIGYWAYGSSVSVYLPEQIGGAKW 301 (445)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~ 301 (445)
|.+..+..+.+++-.+.+.+-|.+-.+..+++ +.++|+.-|
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~-f~sip~a~W 46 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQ-LITYPRALW 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-CCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-ccccchhhh
Confidence 44555555555555667788888866544443 666765434
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.05 E-value=2.2e+02 Score=17.13 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=16.7
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhHHHhh
Q 013326 249 TLRQPAVMNMRKALYSQYTVGLLFYYGVTIIGYWA 283 (445)
Q Consensus 249 ~mk~p~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 283 (445)
-.++|+++-|.++...+- +=..++|..||..
T Consensus 14 ~~~KP~~~Ef~~ia~v~~----iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 14 VLKKPTKDEYLAVAKVTA----LGISLLGIIGYII 44 (56)
T ss_dssp SEECCCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 346777655666554332 2334556666654
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.25 E-value=5.4e+02 Score=17.24 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=12.8
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHHHHHH
Q 013326 246 MQSTLRQPAVMNMRKALYSQYTVGLLFYYGVT 277 (445)
Q Consensus 246 i~~~mk~p~~~~~~~~~~~s~~~~~~~y~~~g 277 (445)
+++..+++. .++............+...|
T Consensus 78 ieDYi~~~~---~r~~~~~~~~~~~~~~~~~~ 106 (113)
T d1nekd_ 78 LTDYVKPLA---LRLMLQLVIVVALVVYVIYG 106 (113)
T ss_dssp HHHHCCSHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCChh---HHHHHHHHHHHHHHHHHHHH
Confidence 456666554 33444333333333333333
No 5
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=3.65 E-value=7.3e+02 Score=17.84 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=15.7
Q ss_pred HHHHHHHHHHh-cccchhhhhccc
Q 013326 228 IGAMSAIIVAN-AAGMIPEMQSTL 250 (445)
Q Consensus 228 ~~~~~~~~faf-~~~~~~~i~~~m 250 (445)
....|-..||| ...+++-+..-|
T Consensus 123 ~Gg~GGa~fAy~Ll~n~~~~d~i~ 146 (151)
T d1jb0l_ 123 VGAMGSAFVAFFLLENFLVVDGIM 146 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hccccHHHHHHHHHcchHHHHHHH
Confidence 46678899999 766665555444
No 6
>d1sg1x4 g.24.1.1 (X:138-161) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.31 E-value=1.6e+02 Score=14.06 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=5.5
Q ss_pred hcccccccccC
Q 013326 435 HIQDYSFFADA 445 (445)
Q Consensus 435 ~~~~~~~f~~~ 445 (445)
++..+.|++||
T Consensus 11 qlrectpwada 21 (26)
T d1sg1x4 11 QLRECTPWADA 21 (26)
T ss_dssp CSBCCBTTBCC
T ss_pred HHHhCCCcccc
Confidence 34455555543
No 7
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.28 E-value=3.6e+02 Score=13.54 Aligned_cols=10 Identities=40% Similarity=1.192 Sum_probs=5.9
Q ss_pred hchhHHHHHH
Q 013326 66 LGWKWGILCM 75 (445)
Q Consensus 66 ~G~~~g~~~l 75 (445)
.||.+|.+++
T Consensus 18 vgwglgalll 27 (32)
T d2e74f1 18 VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHh
Confidence 5666666554
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=8.4e+02 Score=19.05 Aligned_cols=27 Identities=7% Similarity=-0.033 Sum_probs=19.3
Q ss_pred hhhhhhHHHHHhhchhHHHHHHHHHHHH
Q 013326 54 YILSFSNLILVPLGWKWGILCMFFLAFY 81 (445)
Q Consensus 54 GiLs~lP~af~~~G~~~g~~~l~~~~~~ 81 (445)
++.+ .|.++++.-|..+.+++++..++
T Consensus 15 ~~~~-~~~~~~~~~~~~a~~~~~~~~~~ 41 (248)
T d2r6gf1 15 VGYL-VVLMYAQGEYLFAITTLILSSAG 41 (248)
T ss_dssp HHHT-HHHHHGGGCHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHcchHHHHHHHHHHHHhe
Confidence 3556 78899999998877666665443
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.99 E-value=6.7e+02 Score=16.19 Aligned_cols=83 Identities=6% Similarity=-0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCCccccc---------------cccccCCccHHHHHHHHHHHHHHhhhhHhhh
Q 013326 258 MRKALYSQYTVGLLFYYGVTIIGYWAYGSSVSVY---------------LPEQIGGAKWIKVFVNAAVFLQSLVSQHVFI 322 (445)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~---------------il~~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 322 (445)
..|....+..+..+.-+..+...|..-++..+++ -+..+++-.+....++++..+..+....++.
T Consensus 4 ~~r~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFG 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHhhhccccccc
Q 013326 323 SPVYETLDTKLLVLEESM 340 (445)
Q Consensus 323 ~p~~~~l~~~~~~~~~~~ 340 (445)
.+.-...+....++++++
T Consensus 84 ~~~~~i~~~~~~~~~~rr 101 (103)
T d1r3jc_ 84 LVTAALATWFVGREQERR 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.70 E-value=5e+02 Score=14.12 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HhhhhhhhhHHHHHHHHHHH
Q 013326 376 VIGSFSLIPLTFVFPSMVFI 395 (445)
Q Consensus 376 l~Ga~~~~~l~filP~l~~~ 395 (445)
+.|+++........|-..|.
T Consensus 17 l~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 17 LAGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhhccceeEEe
Done!