Query 013328
Match_columns 445
No_of_seqs 470 out of 3523
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 9.4E-32 2E-36 271.3 23.9 197 26-231 251-477 (606)
2 KOG2338 Transcriptional effect 100.0 1.5E-30 3.3E-35 249.0 20.9 369 29-437 116-494 (495)
3 PRK11756 exonuclease III; Prov 99.9 5.2E-25 1.1E-29 207.8 17.1 204 30-275 1-237 (268)
4 TIGR03395 sphingomy sphingomye 99.9 7.7E-24 1.7E-28 199.6 19.2 218 30-275 1-245 (283)
5 COG0708 XthA Exonuclease III [ 99.9 3.4E-24 7.4E-29 193.9 13.2 203 30-276 1-231 (261)
6 KOG3873 Sphingomyelinase famil 99.9 6.6E-23 1.4E-27 187.9 8.7 224 28-275 7-258 (422)
7 COG5239 CCR4 mRNA deadenylase, 99.9 2.7E-22 5.8E-27 184.8 12.3 198 29-232 30-265 (378)
8 COG3568 ElsH Metal-dependent h 99.9 1.5E-21 3.3E-26 176.2 13.9 207 29-277 9-231 (259)
9 TIGR00195 exoDNase_III exodeox 99.9 6E-21 1.3E-25 178.7 17.8 200 30-275 1-225 (254)
10 PRK13911 exodeoxyribonuclease 99.9 5.3E-21 1.1E-25 176.9 16.5 199 30-275 1-224 (250)
11 TIGR00633 xth exodeoxyribonucl 99.9 1.2E-20 2.6E-25 176.9 16.7 201 30-274 1-228 (255)
12 PRK05421 hypothetical protein; 99.8 3.7E-19 8.1E-24 166.8 16.7 167 27-237 41-213 (263)
13 PTZ00297 pantothenate kinase; 99.8 2.8E-17 6E-22 182.8 20.4 170 27-221 8-207 (1452)
14 KOG2756 Predicted Mg2+-depende 99.7 5.4E-17 1.2E-21 143.4 13.8 209 28-275 98-312 (349)
15 smart00476 DNaseIc deoxyribonu 99.7 4.7E-16 1E-20 144.5 20.6 169 28-223 16-190 (276)
16 PF03372 Exo_endo_phos: Endonu 99.7 9.8E-17 2.1E-21 148.4 15.4 150 62-224 17-171 (249)
17 KOG0620 Glucose-repressible al 99.7 5.4E-17 1.2E-21 155.9 10.9 199 26-233 16-245 (361)
18 PRK15251 cytolethal distending 99.6 7.4E-14 1.6E-18 127.6 14.1 195 28-276 23-239 (271)
19 COG2374 Predicted extracellula 99.5 5.1E-13 1.1E-17 134.5 15.0 255 24-286 458-745 (798)
20 COG3021 Uncharacterized protei 99.4 1E-12 2.3E-17 121.1 10.3 196 26-273 85-282 (309)
21 cd05022 S-100A13 S-100A13: S-1 99.3 2.2E-12 4.8E-17 98.8 5.8 69 298-372 4-75 (89)
22 COG5126 FRQ1 Ca2+-binding prot 99.3 9E-12 2E-16 104.9 8.6 80 287-372 75-156 (160)
23 cd05027 S-100B S-100B: S-100B 99.2 2E-11 4.3E-16 93.7 6.7 68 298-371 4-78 (88)
24 PF13499 EF-hand_7: EF-hand do 99.2 2.9E-11 6.3E-16 88.1 6.5 61 304-370 2-66 (66)
25 COG5126 FRQ1 Ca2+-binding prot 99.2 1.8E-11 3.9E-16 103.1 3.9 121 298-432 16-147 (160)
26 KOG0027 Calmodulin and related 99.2 1.3E-10 2.8E-15 99.6 8.6 79 287-371 64-148 (151)
27 KOG0027 Calmodulin and related 99.1 4.1E-11 8.8E-16 102.7 4.9 120 299-431 5-139 (151)
28 cd05026 S-100Z S-100Z: S-100Z 99.1 1.6E-10 3.4E-15 90.0 6.5 71 298-371 6-80 (93)
29 cd05029 S-100A6 S-100A6: S-100 99.1 1.8E-10 3.9E-15 88.4 5.9 68 298-371 6-78 (88)
30 cd05025 S-100A1 S-100A1: S-100 99.0 5.5E-10 1.2E-14 87.1 6.6 72 298-371 5-79 (92)
31 KOG0037 Ca2+-binding protein, 99.0 2.1E-10 4.6E-15 99.6 3.9 102 301-408 56-162 (221)
32 cd05031 S-100A10_like S-100A10 99.0 7.4E-10 1.6E-14 86.7 6.3 68 299-372 5-79 (94)
33 smart00027 EH Eps15 homology d 99.0 1.1E-09 2.3E-14 86.2 6.5 65 299-371 7-71 (96)
34 cd00052 EH Eps15 homology doma 99.0 1.2E-09 2.6E-14 79.7 6.1 59 305-371 2-60 (67)
35 KOG0028 Ca2+-binding protein ( 99.0 2.4E-09 5.2E-14 88.2 8.3 79 287-371 89-169 (172)
36 cd05023 S-100A11 S-100A11: S-1 98.9 2.4E-09 5.3E-14 82.3 6.5 75 298-372 5-80 (89)
37 KOG0028 Ca2+-binding protein ( 98.9 6.6E-10 1.4E-14 91.4 2.5 120 299-431 30-160 (172)
38 PF13833 EF-hand_8: EF-hand do 98.9 5.4E-09 1.2E-13 72.7 6.6 49 318-371 3-52 (54)
39 cd00213 S-100 S-100: S-100 dom 98.9 3.6E-09 7.7E-14 81.8 6.0 71 299-371 5-78 (88)
40 PTZ00183 centrin; Provisional 98.8 2.6E-09 5.5E-14 92.2 3.7 121 299-432 14-145 (158)
41 PTZ00184 calmodulin; Provision 98.8 3E-09 6.4E-14 90.8 3.1 121 299-432 8-139 (149)
42 KOG0031 Myosin regulatory ligh 98.8 3.5E-08 7.6E-13 80.8 8.0 95 264-371 68-164 (171)
43 KOG0041 Predicted Ca2+-binding 98.7 1.1E-08 2.3E-13 87.3 4.7 80 289-375 86-165 (244)
44 cd00051 EFh EF-hand, calcium b 98.7 4.9E-08 1.1E-12 69.3 7.2 60 304-369 2-61 (63)
45 KOG0030 Myosin essential light 98.7 5.7E-08 1.2E-12 78.2 7.1 79 287-372 69-151 (152)
46 PF14658 EF-hand_9: EF-hand do 98.7 7.1E-08 1.5E-12 68.1 6.7 59 307-371 3-63 (66)
47 cd00252 SPARC_EC SPARC_EC; ext 98.7 4.1E-08 8.8E-13 79.1 6.0 63 299-371 45-107 (116)
48 KOG0036 Predicted mitochondria 98.7 1.1E-08 2.4E-13 96.6 3.2 104 299-407 11-119 (463)
49 cd05030 calgranulins Calgranul 98.7 3.7E-08 8.1E-13 75.8 5.5 69 298-372 4-79 (88)
50 KOG0034 Ca2+/calmodulin-depend 98.6 1E-07 2.2E-12 83.3 8.2 82 287-373 87-176 (187)
51 KOG0031 Myosin regulatory ligh 98.6 6.4E-08 1.4E-12 79.3 6.2 93 298-400 28-131 (171)
52 KOG0037 Ca2+-binding protein, 98.6 5.7E-08 1.2E-12 84.6 6.0 82 300-387 122-207 (221)
53 smart00128 IPPc Inositol polyp 98.6 2.9E-07 6.3E-12 88.2 11.4 168 29-223 4-195 (310)
54 KOG0030 Myosin essential light 98.6 3.1E-08 6.8E-13 79.7 3.2 95 299-401 8-104 (152)
55 PTZ00183 centrin; Provisional 98.6 2.4E-07 5.3E-12 79.8 8.9 66 301-372 89-154 (158)
56 PTZ00184 calmodulin; Provision 98.6 2.2E-07 4.8E-12 79.1 8.4 64 302-371 84-147 (149)
57 cd05024 S-100A10 S-100A10: A s 98.5 2.8E-07 6E-12 70.1 6.7 69 298-370 4-74 (91)
58 PF00036 EF-hand_1: EF hand; 98.2 1.8E-06 4E-11 51.0 3.9 26 345-370 1-26 (29)
59 PF00036 EF-hand_1: EF hand; 98.2 1.1E-06 2.3E-11 52.0 2.6 29 303-332 1-29 (29)
60 KOG0036 Predicted mitochondria 98.2 4.4E-06 9.6E-11 79.4 7.6 72 294-371 74-145 (463)
61 KOG0038 Ca2+-binding kinase in 98.1 1.1E-05 2.4E-10 65.5 7.9 82 287-373 91-178 (189)
62 KOG0044 Ca2+ sensor (EF-Hand s 98.1 9.8E-06 2.1E-10 71.1 7.5 73 299-372 97-175 (193)
63 KOG4223 Reticulocalbin, calume 98.1 2.5E-06 5.3E-11 78.9 3.1 63 305-372 166-228 (325)
64 PLN02964 phosphatidylserine de 98.0 6.5E-06 1.4E-10 85.0 6.1 63 304-372 181-243 (644)
65 PLN02964 phosphatidylserine de 98.0 1.3E-05 2.8E-10 82.9 6.8 87 298-393 139-238 (644)
66 KOG0377 Protein serine/threoni 98.0 1.4E-05 3E-10 76.4 6.4 70 299-370 544-613 (631)
67 PF13405 EF-hand_6: EF-hand do 98.0 6.4E-06 1.4E-10 49.8 2.6 30 303-333 1-31 (31)
68 KOG0044 Ca2+ sensor (EF-Hand s 97.9 3.2E-05 6.9E-10 67.9 6.6 76 289-370 49-126 (193)
69 PF12763 EF-hand_4: Cytoskelet 97.8 6.1E-05 1.3E-09 59.5 7.0 64 299-371 7-70 (104)
70 PF14788 EF-hand_10: EF hand; 97.8 6.9E-05 1.5E-09 49.9 5.9 47 319-370 1-47 (51)
71 KOG0566 Inositol-1,4,5-triphos 97.8 0.00011 2.4E-09 76.7 10.5 166 29-221 538-726 (1080)
72 PF14529 Exo_endo_phos_2: Endo 97.8 3.7E-05 8E-10 62.6 5.8 89 168-278 1-101 (119)
73 PF13202 EF-hand_5: EF hand; P 97.6 0.00011 2.4E-09 41.7 3.7 24 346-369 1-24 (25)
74 PF13202 EF-hand_5: EF hand; P 97.6 5E-05 1.1E-09 43.2 2.1 25 304-329 1-25 (25)
75 PRK12309 transaldolase/EF-hand 97.4 0.0002 4.3E-09 70.3 5.8 53 299-370 331-383 (391)
76 KOG4223 Reticulocalbin, calume 97.4 0.00021 4.5E-09 66.4 4.6 76 291-372 65-141 (325)
77 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.00011 2.5E-09 59.1 2.2 63 298-368 50-112 (113)
78 KOG0046 Ca2+-binding actin-bun 97.3 0.00044 9.5E-09 67.9 5.9 71 298-372 15-85 (627)
79 KOG4065 Uncharacterized conser 97.2 0.00079 1.7E-08 52.5 5.4 62 307-369 72-142 (144)
80 PF13405 EF-hand_6: EF-hand do 97.0 0.0011 2.3E-08 39.9 3.8 27 345-371 1-27 (31)
81 KOG0040 Ca2+-binding actin-bun 96.9 0.0013 2.9E-08 71.7 6.0 69 301-375 2252-2327(2399)
82 KOG1294 Apurinic/apyrimidinic 96.5 0.009 1.9E-07 57.3 7.3 68 210-277 213-309 (335)
83 KOG2243 Ca2+ release channel ( 96.5 0.0056 1.2E-07 66.0 6.3 82 284-372 4039-4120(5019)
84 KOG4251 Calcium binding protei 96.0 0.005 1.1E-07 54.8 2.7 65 300-370 99-166 (362)
85 KOG2643 Ca2+ binding protein, 96.0 0.0059 1.3E-07 59.1 3.4 71 298-370 229-312 (489)
86 KOG0034 Ca2+/calmodulin-depend 96.0 0.013 2.7E-07 51.6 5.2 63 298-370 29-93 (187)
87 smart00054 EFh EF-hand, calciu 95.8 0.008 1.7E-07 34.4 2.4 28 303-331 1-28 (29)
88 smart00054 EFh EF-hand, calciu 95.7 0.013 2.8E-07 33.5 3.0 26 345-370 1-26 (29)
89 PF09279 EF-hand_like: Phospho 95.3 0.036 7.8E-07 41.8 5.1 67 303-374 1-71 (83)
90 PF13833 EF-hand_8: EF-hand do 95.2 0.033 7.2E-07 38.1 4.1 32 299-331 22-53 (54)
91 PTZ00312 inositol-1,4,5-tripho 94.3 0.071 1.5E-06 49.3 4.9 62 160-225 74-144 (356)
92 PLN03191 Type I inositol-1,4,5 94.0 0.19 4.2E-06 51.5 7.8 61 161-221 415-481 (621)
93 KOG0377 Protein serine/threoni 93.7 0.32 6.9E-06 47.4 8.3 80 290-372 452-574 (631)
94 PF13499 EF-hand_7: EF-hand do 93.6 0.1 2.3E-06 37.2 3.9 27 346-372 2-28 (66)
95 KOG1976 Inositol polyphosphate 92.8 0.14 3E-06 47.5 4.1 64 158-225 161-233 (391)
96 PF08726 EFhand_Ca_insen: Ca2+ 92.6 0.028 6E-07 40.5 -0.5 56 301-370 5-67 (69)
97 KOG1029 Endocytic adaptor prot 92.4 0.15 3.3E-06 52.9 4.2 65 299-371 192-256 (1118)
98 COG5411 Phosphatidylinositol 5 92.0 0.44 9.5E-06 46.7 6.6 56 164-221 163-218 (460)
99 PF05517 p25-alpha: p25-alpha 90.9 0.91 2E-05 38.7 6.9 63 305-370 2-67 (154)
100 KOG3866 DNA-binding protein of 90.3 0.43 9.3E-06 44.3 4.6 64 304-370 246-322 (442)
101 cd05022 S-100A13 S-100A13: S-1 90.2 0.43 9.4E-06 36.5 3.9 31 302-333 47-77 (89)
102 KOG0042 Glycerol-3-phosphate d 90.2 0.4 8.7E-06 48.4 4.6 64 302-371 593-656 (680)
103 KOG4578 Uncharacterized conser 90.0 0.4 8.6E-06 44.9 4.1 97 266-370 283-396 (421)
104 KOG2562 Protein phosphatase 2 89.9 1 2.2E-05 44.5 6.9 66 298-368 347-420 (493)
105 KOG2643 Ca2+ binding protein, 89.5 0.18 3.9E-06 49.2 1.6 51 310-368 207-257 (489)
106 KOG4666 Predicted phosphate ac 89.0 0.39 8.6E-06 45.0 3.3 65 300-372 294-359 (412)
107 KOG1955 Ral-GTPase effector RA 88.7 0.76 1.6E-05 45.5 5.2 66 298-371 227-292 (737)
108 cd05026 S-100Z S-100Z: S-100Z 88.0 0.48 1E-05 36.6 2.8 33 300-333 51-83 (93)
109 cd05023 S-100A11 S-100A11: S-1 87.1 0.61 1.3E-05 35.7 2.8 32 301-333 51-82 (89)
110 KOG3555 Ca2+-binding proteogly 86.9 0.69 1.5E-05 43.7 3.5 64 299-372 247-310 (434)
111 cd05030 calgranulins Calgranul 86.5 1.4 2.9E-05 33.7 4.5 32 301-333 50-81 (88)
112 PF14788 EF-hand_10: EF hand; 86.1 1.6 3.5E-05 29.3 4.0 33 299-332 18-50 (51)
113 cd05024 S-100A10 S-100A10: A s 85.8 1.6 3.4E-05 33.4 4.4 34 299-333 45-78 (91)
114 cd05029 S-100A6 S-100A6: S-100 85.7 0.77 1.7E-05 35.0 2.8 34 299-333 48-81 (88)
115 KOG4251 Calcium binding protei 85.5 1.1 2.4E-05 40.3 4.0 58 309-372 288-345 (362)
116 KOG1029 Endocytic adaptor prot 85.4 2 4.3E-05 45.1 6.2 57 306-370 17-75 (1118)
117 PRK12309 transaldolase/EF-hand 85.4 0.83 1.8E-05 45.2 3.5 51 339-392 329-379 (391)
118 cd00051 EFh EF-hand, calcium b 84.1 1 2.2E-05 30.6 2.7 25 346-370 2-26 (63)
119 smart00027 EH Eps15 homology d 84.0 1.5 3.3E-05 33.9 3.8 29 344-372 10-38 (96)
120 cd05031 S-100A10_like S-100A10 82.7 0.66 1.4E-05 35.8 1.3 33 300-333 49-81 (94)
121 cd00252 SPARC_EC SPARC_EC; ext 82.5 1 2.2E-05 36.4 2.3 28 301-329 79-106 (116)
122 cd05027 S-100B S-100B: S-100B 82.0 2.6 5.6E-05 32.1 4.3 33 300-333 49-81 (88)
123 KOG0169 Phosphoinositide-speci 81.6 1.9 4.1E-05 45.3 4.4 63 302-370 136-198 (746)
124 cd05025 S-100A1 S-100A1: S-100 81.2 1.5 3.2E-05 33.7 2.7 33 300-333 50-82 (92)
125 KOG0035 Ca2+-binding actin-bun 80.0 2.9 6.3E-05 45.1 5.2 68 298-371 743-815 (890)
126 cd00213 S-100 S-100: S-100 dom 79.5 2.2 4.8E-05 32.3 3.2 27 344-370 8-36 (88)
127 KOG0751 Mitochondrial aspartat 79.3 1.7 3.7E-05 43.2 3.0 69 300-372 106-175 (694)
128 cd00052 EH Eps15 homology doma 78.8 2.1 4.6E-05 30.1 2.8 32 300-332 31-62 (67)
129 KOG2562 Protein phosphatase 2 78.0 2.7 5.9E-05 41.6 4.0 56 308-372 284-343 (493)
130 PF01023 S_100: S-100/ICaBP ty 77.2 2.8 6.1E-05 27.3 2.7 32 300-331 4-36 (44)
131 KOG0041 Predicted Ca2+-binding 76.8 1.9 4.2E-05 37.7 2.3 27 344-370 99-125 (244)
132 PF07499 RuvA_C: RuvA, C-termi 76.7 7.3 0.00016 25.7 4.7 42 322-372 3-44 (47)
133 COG5239 CCR4 mRNA deadenylase, 74.9 1.7 3.7E-05 41.7 1.7 58 167-230 139-196 (378)
134 PF05042 Caleosin: Caleosin re 74.2 12 0.00026 32.2 6.4 70 302-372 7-124 (174)
135 KOG4666 Predicted phosphate ac 73.8 5.6 0.00012 37.6 4.6 60 302-367 259-319 (412)
136 KOG0751 Mitochondrial aspartat 70.2 24 0.00053 35.4 8.3 61 303-371 74-135 (694)
137 KOG0808 Carbon-nitrogen hydrol 67.6 5.1 0.00011 36.5 2.9 27 60-86 99-125 (387)
138 KOG4347 GTPase-activating prot 63.3 8.9 0.00019 39.8 4.0 60 300-366 553-612 (671)
139 PF12763 EF-hand_4: Cytoskelet 61.0 7 0.00015 30.8 2.3 32 300-332 41-72 (104)
140 PF14658 EF-hand_9: EF-hand do 58.8 22 0.00048 25.4 4.2 45 287-331 18-64 (66)
141 PF08976 DUF1880: Domain of un 55.8 11 0.00023 30.1 2.5 32 339-370 2-33 (118)
142 PF14513 DAG_kinase_N: Diacylg 55.3 15 0.00033 30.6 3.4 46 318-370 6-58 (138)
143 PF09069 EF-hand_3: EF-hand; 51.4 77 0.0017 24.2 6.5 66 303-372 4-75 (90)
144 KOG0998 Synaptic vesicle prote 51.0 4.8 0.0001 44.2 -0.2 64 299-370 280-343 (847)
145 KOG3449 60S acidic ribosomal p 49.5 54 0.0012 25.9 5.3 52 305-367 4-55 (112)
146 KOG0038 Ca2+-binding kinase in 49.5 19 0.0004 30.0 3.0 57 309-371 78-135 (189)
147 PF03672 UPF0154: Uncharacteri 49.2 37 0.00079 24.1 4.0 32 318-354 30-61 (64)
148 PRK00523 hypothetical protein; 47.9 39 0.00084 24.5 4.1 32 318-354 38-69 (72)
149 KOG2871 Uncharacterized conser 46.9 16 0.00034 35.3 2.5 67 299-371 306-373 (449)
150 PF00404 Dockerin_1: Dockerin 46.2 29 0.00064 18.6 2.5 16 312-328 1-16 (21)
151 cd07313 terB_like_2 tellurium 45.3 29 0.00063 26.9 3.6 52 318-372 14-65 (104)
152 KOG1707 Predicted Ras related/ 44.0 20 0.00042 37.1 2.9 60 300-368 313-373 (625)
153 PLN02230 phosphoinositide phos 41.2 76 0.0017 33.4 6.7 70 300-373 27-103 (598)
154 KOG0565 Inositol polyphosphate 39.1 28 0.0006 29.1 2.7 60 164-225 57-124 (145)
155 PRK01844 hypothetical protein; 39.0 63 0.0014 23.5 4.0 32 318-354 37-68 (72)
156 PLN02952 phosphoinositide phos 36.5 1.3E+02 0.0028 31.7 7.5 69 300-373 36-111 (599)
157 COG3763 Uncharacterized protei 35.6 76 0.0016 22.9 3.9 43 305-354 26-68 (71)
158 PF03979 Sigma70_r1_1: Sigma-7 35.5 39 0.00085 25.2 2.7 33 318-357 20-52 (82)
159 PF08461 HTH_12: Ribonuclease 35.4 53 0.0011 23.4 3.3 35 318-357 12-46 (66)
160 KOG4004 Matricellular protein 35.1 20 0.00043 31.5 1.1 54 308-368 193-246 (259)
161 PF12419 DUF3670: SNF2 Helicas 34.6 51 0.0011 27.5 3.6 54 315-369 80-138 (141)
162 PLN03191 Type I inositol-1,4,5 34.2 37 0.0008 35.5 3.1 16 421-436 576-591 (621)
163 PLN02222 phosphoinositide phos 33.7 96 0.0021 32.6 6.0 68 300-373 23-91 (581)
164 cd00086 homeodomain Homeodomai 32.5 1E+02 0.0022 20.6 4.3 39 301-352 12-50 (59)
165 KOG3555 Ca2+-binding proteogly 31.7 34 0.00073 32.8 2.2 89 296-388 205-300 (434)
166 PLN02228 Phosphoinositide phos 28.5 1.5E+02 0.0033 31.0 6.5 68 300-373 22-93 (567)
167 KOG1478 3-keto sterol reductas 27.9 1.1E+02 0.0025 28.4 4.7 90 263-367 87-189 (341)
168 COG5562 Phage envelope protein 27.0 44 0.00096 27.5 1.8 50 318-376 55-104 (137)
169 COG4103 Uncharacterized protei 27.0 70 0.0015 26.6 3.0 61 306-372 34-94 (148)
170 PF09949 DUF2183: Uncharacteri 26.3 92 0.002 24.3 3.5 23 208-231 63-85 (100)
171 PF10591 SPARC_Ca_bdg: Secrete 24.4 53 0.0011 26.3 1.9 24 303-327 89-112 (113)
172 PLN02952 phosphoinositide phos 24.2 1.8E+02 0.0039 30.8 6.1 55 315-374 13-67 (599)
173 PF05099 TerB: Tellurite resis 24.0 37 0.00081 27.9 1.0 50 318-370 38-87 (140)
174 TIGR02764 spore_ybaN_pdaB poly 23.4 2.5E+02 0.0055 24.4 6.3 63 29-107 120-186 (191)
175 cd08165 MPP_MPPE1 human MPPE1 22.7 96 0.0021 26.2 3.3 49 169-220 2-50 (156)
176 PF05872 DUF853: Bacterial pro 22.6 4.5E+02 0.0098 26.8 8.2 35 298-333 124-158 (502)
177 TIGR02675 tape_meas_nterm tape 22.4 99 0.0021 22.6 2.8 14 318-331 29-42 (75)
178 PF09279 EF-hand_like: Phospho 22.3 1.3E+02 0.0029 22.0 3.7 30 345-375 1-30 (83)
179 PLN02223 phosphoinositide phos 22.1 2.1E+02 0.0045 29.8 5.9 71 299-374 13-94 (537)
180 PF01885 PTS_2-RNA: RNA 2'-pho 22.0 1.4E+02 0.003 26.3 4.1 39 311-355 25-63 (186)
181 PF07308 DUF1456: Protein of u 21.6 2.5E+02 0.0054 20.2 4.7 14 339-352 28-41 (68)
182 PTZ00235 DNA polymerase epsilo 21.3 2E+02 0.0044 27.3 5.3 13 210-222 65-77 (291)
183 KOG1954 Endocytosis/signaling 21.1 1.1E+02 0.0024 30.0 3.5 57 302-367 444-500 (532)
184 PF00046 Homeobox: Homeobox do 20.3 2.2E+02 0.0048 18.9 4.2 39 301-352 12-50 (57)
185 cd02072 Glm_B12_BD B12 binding 20.3 2.2E+02 0.0047 23.4 4.7 40 64-103 40-79 (128)
186 PTZ00370 STEVOR; Provisional 20.1 1.3E+02 0.0028 28.3 3.7 85 322-428 56-142 (296)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=9.4e-32 Score=271.26 Aligned_cols=197 Identities=27% Similarity=0.410 Sum_probs=150.9
Q ss_pred CCCceEEEeeccccccccCCCCc-cccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCcc
Q 013328 26 QQPCITCTTFNILAPIYKRLSNE-NCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYV 104 (445)
Q Consensus 26 ~~~~lrvlT~NV~~~~~~~~~~~-~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~ 104 (445)
...+||||||||++..|+..+.+ +| +...+.|.+|+..|+++|..++||||||||| ..+++.+.+...|..+||.
T Consensus 251 ~~~~frVmSYNILAd~ya~~dly~yc--p~~aL~W~yRk~lIl~EI~~~~aDIICLQEV--~~~~~~d~~~p~L~~~GY~ 326 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDMYSYC--PPWALSWTYRRQNLLREIVGYRADILCLQEV--QSDHFEEFFAPELDKHGYQ 326 (606)
T ss_pred CCCCEEEEEeeeccccccCcccccCC--CccccCHHHHHHHHHHHHHhcCCCEEEEeec--CHHHHHHHHHhhhhhcCce
Confidence 45689999999999988876654 45 3467899999999999999999999999999 4556777888899999999
Q ss_pred EEEecCCCC-------CCceEEEEEecCcceEEeeEEEEecCCC----------------------Cceeeeeccccccc
Q 013328 105 NFKLARTNN-------RGDGLLTAVHKDYFRVVNYRDLLFNDFG----------------------DRVAQLLHVELIDP 155 (445)
Q Consensus 105 ~~~~~~~~~-------~~~G~ai~~~s~~~~i~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~ 155 (445)
.++..+.+. ..+|+|||||+++|.+++...+.|.... ++++.++.++....
T Consensus 327 Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~ 406 (606)
T PLN03144 327 ALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFG 406 (606)
T ss_pred EEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEecc
Confidence 998776542 4679999999999999998888664321 11233333322110
Q ss_pred ccccccCCCCceEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhhh
Q 013328 156 FSQCRNGDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLR 231 (445)
Q Consensus 156 ~~~~~~~~~g~~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~ 231 (445)
.........++.|+|+||||+|.+ .....|+.|+..|++.++++... .+.|+|||||||+.|++.+|++|.
T Consensus 407 ~~~~~~~~~~~~l~VaNTHL~~~p--~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS~P~S~vy~lLt 477 (606)
T PLN03144 407 NQGADNGGKRQLLCVANTHIHANQ--ELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNSVPGSAPHCLLA 477 (606)
T ss_pred cccccCCCCccEEEEEEeeeccCC--ccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCCCCCChhhhhhh
Confidence 000001123467999999999865 45678999999999999987643 578999999999999999999985
No 2
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.97 E-value=1.5e-30 Score=249.00 Aligned_cols=369 Identities=29% Similarity=0.375 Sum_probs=241.8
Q ss_pred ceEEEeeccccccccCC-CCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEE
Q 013328 29 CITCTTFNILAPIYKRL-SNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFK 107 (445)
Q Consensus 29 ~lrvlT~NV~~~~~~~~-~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 107 (445)
.|+||||||+++.+... ...+.+.+...+.|..|...|+.++..++|||+|||||+ .+++...+...++..||..++
T Consensus 116 ~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq--~d~~~~~~~~~~~~lGy~~~~ 193 (495)
T KOG2338|consen 116 DFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQ--EDHYPEFWQPLLGKLGYTGFF 193 (495)
T ss_pred ceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhh--hhhhHHHHHHHHhhcCceEEE
Confidence 79999999999866331 122334567889999999999999999999999999994 456777888999999999988
Q ss_pred ecCCCCCCceEEEEEecCcceEEeeEEEEecCCC------CceeeeecccccccccccccCC-CCceEEEEEeeeeCCCC
Q 013328 108 LARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFG------DRVAQLLHVELIDPFSQCRNGD-LRQEILIVNTHLLFPHD 180 (445)
Q Consensus 108 ~~~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~g~~v~v~n~HL~~~~~ 180 (445)
..+.+.+..||||+|++.+|.++....+.+.+.. ++++..+.++. ++.. .++.+.|+||||.+++
T Consensus 194 ~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f-------~~~~~~sq~ilVanTHLl~np- 265 (495)
T KOG2338|consen 194 KRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEF-------RLVDESSQGILVANTHLLFNP- 265 (495)
T ss_pred EeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEe-------cccCcccCceEEEeeeeeecC-
Confidence 8888889999999999999999998888776443 44555554442 2222 3679999999999976
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhhhhCCCcccccccccCCCCCCCcceeccCCC
Q 013328 181 SSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNHR 260 (445)
Q Consensus 181 ~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~~~~~~~t~~~~~~~~ 260 (445)
.....|++|...|++.++++.+... ...|+++|||||+.|+++.|..++..++.-..+.++. .+....|... +..
T Consensus 266 -~~~~vrL~Q~~iiL~~~~~~~~~~~-~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~~--~e~s~~~~~~-~~~ 340 (495)
T KOG2338|consen 266 -SRSDVRLAQVYIILAELEKMSKSSK-SHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAHT--IEDSHRYVFS-ESR 340 (495)
T ss_pred -cccchhhHHHHHHHHHHHHHHhhcc-cCCCeEEecCCCCCCCCCcchhhhcCCceeccccccc--cccccccccc-ccc
Confidence 4567799999999999999887533 4679999999999999999999998888754444431 1222222221 111
Q ss_pred CcccccceeeecCCcccccccccchhHHHHHHHHHhhhhccchHHHhcccc-ccCCCCCcccHHHHHHHHHHhccCCCCC
Q 013328 261 GNICGVDFIWLLNPNKYRKLLKASWSEAVFGMFKCLLRRASLTETDAFAFL-KADNDGDYITYSGFCEALEQLNLTGHKH 339 (445)
Q Consensus 261 ~~~~rIDyi~~~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~~~~~~~F~~~-D~~~~~G~i~~~el~~~l~~~g~~~~~~ 339 (445)
...... ..-|..+.+.............-.++|... |++.. =..+..|+....+.+++..++.
T Consensus 341 ~ge~g~---------------d~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~-~~~~~~~h~~~~~~~s~~s~g~ 404 (495)
T KOG2338|consen 341 LGEEGE---------------DDEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHL-VELTYSEHESLKVNVSLYSHGY 404 (495)
T ss_pred cCcccc---------------cchhhhhhhccCccccccccCCCccccccccccchh-HHHHHHHhhhhhcccceeeccc
Confidence 111111 112555555544443322222333445443 22222 2334444443223333222323
Q ss_pred CCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhccCccccccccCCcccccccccccccccCeeeeccccCCcccccCCCC
Q 013328 340 GLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTTWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWP 419 (445)
Q Consensus 340 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 419 (445)
..... +...- |.++.|..+|..=.....+.......+...+-. +.+ ....++.....+...+.++.++-||
T Consensus 405 ~~~~~--~~~~~--~~gep~vt~~~~~~~g~~dyif~~~~~~~~~~~--~~~---~~~~ikl~~~l~ip~~~e~~k~~~p 475 (495)
T KOG2338|consen 405 GLVHT--ENAWL--DRGEPGVTNYALTWKGTLDYIFYSPGDCKQSNR--EFE---EDEAIKLKGLLRIPSPQEMWKAGQP 475 (495)
T ss_pred cccch--hhccc--cCCCcceecHHhhhccceeeEEeccCcccccch--hhh---cccceeEEEEecCCCHHHhhccCCC
Confidence 33332 22221 788889999976653333322222222122211 111 1335667777777788888899999
Q ss_pred CC-CCCCCCcceeEEeeec
Q 013328 420 EN-YSLSDHARLTVVFSPI 437 (445)
Q Consensus 420 ~~-~~~~~~~~~~~~~~~~ 437 (445)
.+ +=-|||-.|.++|++.
T Consensus 476 ~~~~~~SDH~aL~~~~~~~ 494 (495)
T KOG2338|consen 476 PNGRYGSDHIALVAQFSLV 494 (495)
T ss_pred CCCCCcccceEeeEeeEee
Confidence 88 5559999999999873
No 3
>PRK11756 exonuclease III; Provisional
Probab=99.93 E-value=5.2e-25 Score=207.77 Aligned_cols=204 Identities=16% Similarity=0.180 Sum_probs=130.3
Q ss_pred eEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEEec
Q 013328 30 ITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFKLA 109 (445)
Q Consensus 30 lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~~~ 109 (445)
|||+||||++. ..|...++++|++.+||||||||++.....+. ...+...||.+++..
T Consensus 1 mri~T~Nv~g~-------------------~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~---~~~~~~~gy~~~~~~ 58 (268)
T PRK11756 1 MKFVSFNINGL-------------------RARPHQLEAIIEKHQPDVIGLQETKVHDEMFP---LEEVEALGYHVFYHG 58 (268)
T ss_pred CEEEEEEcCCH-------------------HHHHHHHHHHHHhcCCCEEEEEecccccccCC---HHHHHhcCCEEEEeC
Confidence 69999999843 23567899999999999999999964432221 122334688776643
Q ss_pred CCCCCCceEEEEEecCcceEEeeEEEEecCCC-CceeeeecccccccccccccCCCCceEEEEEeeeeCCCCC---CChh
Q 013328 110 RTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFG-DRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDS---SLSL 185 (445)
Q Consensus 110 ~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~~~~~~---~~~~ 185 (445)
.....|+||+ |+ +|+..... .++... ...+..+ .+++...++.+.|+|+|+..+... ....
T Consensus 59 --~~~~~Gvail--Sr-~p~~~~~~-~~~~~~~~~~~r~l---------~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~ 123 (268)
T PRK11756 59 --QKGHYGVALL--SK-QTPIAVRK-GFPTDDEEAQRRII---------MATIPTPNGNLTVINGYFPQGESRDHPTKFP 123 (268)
T ss_pred --CCCCCEEEEE--EC-CChHHeEE-CCCCccccccCCEE---------EEEEEcCCCCEEEEEEEecCCCCCCcchhHH
Confidence 3345699999 66 56654332 222111 1111111 123333445599999998543211 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcc--------------------------hhHhhhhCCCcccc
Q 013328 186 VRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGH--------------------------VYKFLRSQGFVSSY 239 (445)
Q Consensus 186 ~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~--------------------------~~~~l~~~g~~d~~ 239 (445)
.|.++...|.+.+.+..+ .+.|+|||||||..|.+. .++.+.+.||+|+|
T Consensus 124 ~r~~~~~~l~~~l~~~~~----~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~~ 199 (268)
T PRK11756 124 AKRQFYQDLQNYLETELS----PDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVDTF 199 (268)
T ss_pred HHHHHHHHHHHHHHHHhc----cCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEeeh
Confidence 566777878777766533 567999999999987754 34556677999999
Q ss_pred cccccCCCCCCCcceeccCC---CCcccccceeeecCCc
Q 013328 240 DTAHQYTDADAHKWVSHRNH---RGNICGVDFIWLLNPN 275 (445)
Q Consensus 240 ~~~~~~~~~~~~t~~~~~~~---~~~~~rIDyi~~~~~~ 275 (445)
+..++... ..+||..++.. .....||||||+++..
T Consensus 200 R~~~p~~~-~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~ 237 (268)
T PRK11756 200 RQLNPDVN-DRFSWFDYRSKGFDDNRGLRIDLILATQPL 237 (268)
T ss_pred hhhCCCCC-CcccCcCCcccccccCCceEEEEEEeCHHH
Confidence 99887522 35677655432 1246799999997554
No 4
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.92 E-value=7.7e-24 Score=199.55 Aligned_cols=218 Identities=15% Similarity=0.168 Sum_probs=139.2
Q ss_pred eEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHh-hccCccEEEe
Q 013328 30 ITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRL-SDAGYVNFKL 108 (445)
Q Consensus 30 lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l-~~~gy~~~~~ 108 (445)
||||||||+...+. ......|..|.+.|++.+...+|||||||||+. ....+.+...| ..++|.....
T Consensus 1 lkVmtyNv~~l~~~---------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~--~~~~~~l~~~L~~~yp~~~~~~ 69 (283)
T TIGR03395 1 IKILSHNVYMLSTN---------LYPNWGQMERADLIASADYIKNQDVVILNEAFD--TSASKRLLDNLREEYPYQTDVI 69 (283)
T ss_pred CeEEEEEeeeeccc---------ccCCccHhHHHHHHHHhhcccCCCEEEEecccc--hHHHHHHHHHHHhhCCceEeec
Confidence 68999999854211 112345889999999999999999999999953 22233344444 3466654322
Q ss_pred cCC--------------CCCCceEEEEEecCcceEEeeEEEEecCCCCceeeeecccccccccccccCCCCceEEEEEee
Q 013328 109 ART--------------NNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTH 174 (445)
Q Consensus 109 ~~~--------------~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~H 174 (445)
++. .....|++|+ |+ +||+......|+..... ... ..+.+..+++..+|..+.|+|||
T Consensus 70 g~~~~g~~~~~g~~~~~~~~~~G~~iL--Sr-~Pi~~~~~~~f~~~~~~-d~~----~~kg~l~a~i~~~g~~~~v~~TH 141 (283)
T TIGR03395 70 GRSKKGWDKTLGNYSSSALEDGGVAIV--SK-WPIEEKIQYIFNKGCGA-DNL----SNKGFAYVKINKNGKKFHVIGTH 141 (283)
T ss_pred ccccccchhccccccccCccCCEEEEE--EC-CCccccEEEEccCCCCC-ccc----cCCceEEEEEecCCeEEEEEEeC
Confidence 221 1224599999 99 99998877766532210 000 01122335566678999999999
Q ss_pred eeCCCCC----CChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhhhhC-CCcccccccccCCCCC
Q 013328 175 LLFPHDS----SLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQ-GFVSSYDTAHQYTDAD 249 (445)
Q Consensus 175 L~~~~~~----~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~-g~~d~~~~~~~~~~~~ 249 (445)
|.+.... .....|..|+..|.+.+.+.. ...+.|+|||||||+.|.+..|+.|... +..+.. +. +.
T Consensus 142 L~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~---~~~~~pvIl~GDfN~~~~s~~~~~ml~~l~~~~p~-----~~-g~ 212 (283)
T TIGR03395 142 LQAQDSMCSKLGPASIRANQLNEIQDFIDSKN---IPKDETVLIGGDLNVNKGSNEYHDMFKTLNVSEPR-----YV-GV 212 (283)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcc---CCCCceEEEEeeCCCCCCCHHHHHHHHHhcccCCC-----cC-CC
Confidence 9764321 125789999999998886421 1246789999999999999998877432 332211 11 12
Q ss_pred CCcceeccCC-------CCcccccceeeecCCc
Q 013328 250 AHKWVSHRNH-------RGNICGVDFIWLLNPN 275 (445)
Q Consensus 250 ~~t~~~~~~~-------~~~~~rIDyi~~~~~~ 275 (445)
..||....|. .+...||||||+++..
T Consensus 213 ~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 213 PATWDATTNSIAKYYYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred CCCcCCCcCchhhhhcCCCCcceEEEEEEECCC
Confidence 4566553321 2334599999998553
No 5
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.4e-24 Score=193.88 Aligned_cols=203 Identities=23% Similarity=0.377 Sum_probs=129.3
Q ss_pred eEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEEec
Q 013328 30 ITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFKLA 109 (445)
Q Consensus 30 lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~~~ 109 (445)
|||+||||.+. ..|.+.+.+++.+.+||||||||++.....+. ...+...||+.++..
T Consensus 1 mkI~SwNVNgi-------------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp---~~~~~~~GY~~~~~~ 58 (261)
T COG0708 1 MKIASWNVNGL-------------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFP---REELEALGYHHVFNH 58 (261)
T ss_pred CeeEEEehhhH-------------------HHHHHHHHHHHHHhCCCEEEEEecccCcccCC---HhHHhhCCceEEEec
Confidence 68999999965 23778899999999999999999987665555 333445689544432
Q ss_pred CCCCCCceEEEEEecCcceEEeeEEEEecC--CCCceeeeecccccccccccccCCCCceEEEEEeeeeCCCCCCChhhH
Q 013328 110 RTNNRGDGLLTAVHKDYFRVVNYRDLLFND--FGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSLVR 187 (445)
Q Consensus 110 ~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~~~~~~~~~~~R 187 (445)
.. ....||||++|.. +. .....++. ..+..++.+.+. + ..|.|+|+ |.|.+......|
T Consensus 59 gq-KgysGVailsr~~---~~-~v~~g~~~~~~~d~e~R~I~a~---------~----~~~~v~~~--Y~PnG~~~~~~k 118 (261)
T COG0708 59 GQ-KGYSGVAILSKKP---PD-DVRRGFPGEEEDDEEGRVIEAE---------F----DGFRVINL--YFPNGSSIGLEK 118 (261)
T ss_pred Cc-CCcceEEEEEccC---ch-hhhcCCCCCccccccCcEEEEE---------E----CCEEEEEE--EcCCCCCCCCcc
Confidence 22 5556999995444 22 11122222 112223322222 1 22889998 777654323344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCc-----------------------chhHhhhhCCCccccccccc
Q 013328 188 LHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG-----------------------HVYKFLRSQGFVSSYDTAHQ 244 (445)
Q Consensus 188 ~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s-----------------------~~~~~l~~~g~~d~~~~~~~ 244 (445)
...-....+.+..++.+....+.|+|+|||||..|.. ..+..|...||+|+++..++
T Consensus 119 ~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~~p 198 (261)
T COG0708 119 FDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHP 198 (261)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHhhCC
Confidence 4444444444444443333467999999999987642 12456778899999999987
Q ss_pred CCCCCCCcceeccCC---CCcccccceeeecCCcc
Q 013328 245 YTDADAHKWVSHRNH---RGNICGVDFIWLLNPNK 276 (445)
Q Consensus 245 ~~~~~~~t~~~~~~~---~~~~~rIDyi~~~~~~~ 276 (445)
.++ .+||.+++.. ...+.||||+++++..+
T Consensus 199 ~~~--~YTwW~YR~~~~~~n~G~RID~~l~S~~L~ 231 (261)
T COG0708 199 EPE--KYTWWDYRANAARRNRGWRIDYILVSPALA 231 (261)
T ss_pred CCC--cccccccccchhhhcCceeEEEEEeCHHHH
Confidence 654 3777776632 22467999999977654
No 6
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.88 E-value=6.6e-23 Score=187.93 Aligned_cols=224 Identities=19% Similarity=0.184 Sum_probs=157.9
Q ss_pred CceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHH-hhccCccEE
Q 013328 28 PCITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKR-LSDAGYVNF 106 (445)
Q Consensus 28 ~~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~-l~~~gy~~~ 106 (445)
-.|||+|.|+|+..|.... ...|...+-+.+.....||+.|||||... ++. .|.+. -..++|..+
T Consensus 7 ~~lriltlN~Wgip~~Sk~------------R~~Rm~~~g~~l~~E~yDiv~LQEvWs~e-D~~-~L~~~~ss~yPysh~ 72 (422)
T KOG3873|consen 7 LELRILTLNIWGIPYVSKD------------RRHRMDAIGDELASEKYDIVSLQEVWSQE-DFE-YLQSGCSSVYPYSHY 72 (422)
T ss_pred heeeeeEeeccccccccch------------hHHHHHHHhHHHhhcccchhhHHHHHHHH-HHH-HHHHhccccCchHHh
Confidence 4699999999987544432 24588899999999999999999998543 333 33443 334888877
Q ss_pred EecCCCCCCceEEEEEecCcceEEeeEEEEecCCCCceeeeeccccc--ccccccccCCCCceEEEEEeeeeCCCC---C
Q 013328 107 KLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELI--DPFSQCRNGDLRQEILIVNTHLLFPHD---S 181 (445)
Q Consensus 107 ~~~~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~v~v~n~HL~~~~~---~ 181 (445)
|+ ++--+.|+++| || +||+++....++-.+ ....+.+-.+- ..+..+.+..+|+.+.++||||+++-+ +
T Consensus 73 FH--SGimGaGL~vf--SK-~PI~~t~~~~y~lNG-~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D 146 (422)
T KOG3873|consen 73 FH--SGIMGAGLCVF--SK-HPILETLFHRYSLNG-YPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQND 146 (422)
T ss_pred hh--cccccCceEEe--ec-CchhhhhhhccccCC-ccceeeeccccccceeEEEEEeeCCEEeeeeehhccccccccCc
Confidence 75 45557899999 99 899987766554332 11111111110 011124555678999999999988643 4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhhhhCCCcccccccccCC---------------
Q 013328 182 SLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYT--------------- 246 (445)
Q Consensus 182 ~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~~--------------- 246 (445)
.+...|..|+..+.+.++...+ ...-||++||||+.|.+-.++.|++.|++|+|...+...
T Consensus 147 ~YL~HR~~QAwdlaqfi~~t~q----~~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~ 222 (422)
T KOG3873|consen 147 EYLCHRVAQAWDLAQFIRATRQ----NADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDSFRLSEDKELV 222 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHhc----CCcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCcccccchhhhhh
Confidence 5778899999999999988765 567799999999999999999999999999998755321
Q ss_pred -----CCCCCcceeccCCCCc--ccccceeeecCCc
Q 013328 247 -----DADAHKWVSHRNHRGN--ICGVDFIWLLNPN 275 (445)
Q Consensus 247 -----~~~~~t~~~~~~~~~~--~~rIDyi~~~~~~ 275 (445)
+....+|.+....... .+||||+|+++..
T Consensus 223 ~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~ 258 (422)
T KOG3873|consen 223 EGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGD 258 (422)
T ss_pred cCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcc
Confidence 1123445542222223 6799999998755
No 7
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.88 E-value=2.7e-22 Score=184.82 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=139.7
Q ss_pred ceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEEe
Q 013328 29 CITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFKL 108 (445)
Q Consensus 29 ~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~~ 108 (445)
.++|||||+++..|.+...+... ..++.|..|.+.|+++|..++|||+|||||+ ...+.+.+.+.|+..||...+.
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s--~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd--~~~~~~fw~~~l~~~gY~~if~ 105 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYS--GWALKWSYRSRLLLQELLYYNADILCLQEVD--AEDFEDFWKDQLGKLGYDGIFI 105 (378)
T ss_pred eeEEEehhhhhhhhccccccCCc--hhhhhhHHHHHHHHHHHhccCCceeeeehhh--hhHHHHHHHHHhcccccceEEe
Confidence 59999999999999988776442 5688999999999999999999999999994 4567888999999999999887
Q ss_pred cCCC----------CCCceEEEEEec----CcceEEeeEEEEecCCC-------------Cceeeeeccccccccccccc
Q 013328 109 ARTN----------NRGDGLLTAVHK----DYFRVVNYRDLLFNDFG-------------DRVAQLLHVELIDPFSQCRN 161 (445)
Q Consensus 109 ~~~~----------~~~~G~ai~~~s----~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 161 (445)
.+.+ ....||+|+++. +++-++-.....|...- .++....++.+...+.....
T Consensus 106 ~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n 185 (378)
T COG5239 106 PKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLFN 185 (378)
T ss_pred cCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeeecc
Confidence 6554 134699999876 21112211111111000 11111111111111122334
Q ss_pred CCCCceEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCC-----------CCCcEEEeecCCCCcCcchhHhh
Q 013328 162 GDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNL-----------KPIPIILCGDWNGSKRGHVYKFL 230 (445)
Q Consensus 162 ~~~g~~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~-----------~~~pvIl~GDFN~~p~s~~~~~l 230 (445)
+.+|.++.|++||++|.+ ...+.++-|+..+.+.++....+... +..++.++||||+...+.+|..|
T Consensus 186 ~e~gd~~~va~Th~~w~~--~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy~~l 263 (378)
T COG5239 186 KEPGDTPYVANTHLPWDP--KYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVYKFL 263 (378)
T ss_pred CCCCCceeEEeccccccC--CCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceehhhh
Confidence 457999999999999954 55677899999999999887765422 12267999999999999888877
Q ss_pred hh
Q 013328 231 RS 232 (445)
Q Consensus 231 ~~ 232 (445)
..
T Consensus 264 ~~ 265 (378)
T COG5239 264 VT 265 (378)
T ss_pred hh
Confidence 54
No 8
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=176.17 Aligned_cols=207 Identities=16% Similarity=0.074 Sum_probs=128.7
Q ss_pred ceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccCh----hhHHHHHHHHhhccCcc
Q 013328 29 CITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGN----EELVDMYEKRLSDAGYV 104 (445)
Q Consensus 29 ~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~----~~~~~~l~~~l~~~gy~ 104 (445)
.++|+||||+... . ..++..+.+.+.+.|.+..||||||||+.... ..+.++........+..
T Consensus 9 ~~~v~TyNih~~~---~----------~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (259)
T COG3568 9 RFKVLTYNIHKGF---G----------AFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAP 75 (259)
T ss_pred eeEEEEEEEEEcc---C----------ccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCc
Confidence 4899999999553 1 11345577999999999999999999996311 12222222222222222
Q ss_pred EEEecC-----CCCCCceEEEEEecCcceEEeeEEEEecCC---CCceeeeecccccccccccccCC-CCceEEEEEeee
Q 013328 105 NFKLAR-----TNNRGDGLLTAVHKDYFRVVNYRDLLFNDF---GDRVAQLLHVELIDPFSQCRNGD-LRQEILIVNTHL 175 (445)
Q Consensus 105 ~~~~~~-----~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~v~n~HL 175 (445)
+.+... ......|++|+ |+ +|+.......++.. ..+.+.. +++.. .|+++.|+|+||
T Consensus 76 ~~~~~~~~~a~~~~~~~GnaiL--S~-~pi~~v~~~~lp~~~~~~~Rgal~-----------a~~~~~~g~~l~V~~~HL 141 (259)
T COG3568 76 YWWSGAAFGAVYGEGQHGNAIL--SR-LPIRDVENLALPDPTGLEPRGALL-----------AEIELPGGKPLRVINAHL 141 (259)
T ss_pred cccchhhhhhhcccceeeeEEE--ec-CcccchhhccCCCCCCCCCceeEE-----------EEEEcCCCCEEEEEEEec
Confidence 221111 12334599999 76 88888888877753 2233332 23333 477999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhhhhCCC--cccccc-cccCCCCCCCc
Q 013328 176 LFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGF--VSSYDT-AHQYTDADAHK 252 (445)
Q Consensus 176 ~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~--~d~~~~-~~~~~~~~~~t 252 (445)
. .....|.+|++.|++.+.-. ...|+|+|||||..|.++.|+.....-+ .++... ..........+
T Consensus 142 ~-----l~~~~R~~Q~~~L~~~~~l~------~~~p~vl~GDFN~~p~s~~yr~~~~~~~~~~~~~~~~~~~a~~~~~~t 210 (259)
T COG3568 142 G-----LSEESRLRQAAALLALAGLP------ALNPTVLMGDFNNEPGSAEYRLAARSPLNAQAALTGAFAPAVGRTIRT 210 (259)
T ss_pred c-----ccHHHHHHHHHHHHhhccCc------ccCceEEEccCCCCCCCccceeccCCchhhccccccccCcccCcccCC
Confidence 4 34577999999998832211 3349999999999999999966543211 111111 11111111357
Q ss_pred ceeccCCCCcccccceeeecCCccc
Q 013328 253 WVSHRNHRGNICGVDFIWLLNPNKY 277 (445)
Q Consensus 253 ~~~~~~~~~~~~rIDyi~~~~~~~~ 277 (445)
|+++.+ ..+|||||+++....
T Consensus 211 fps~~p----~lriD~Ifvs~~~~i 231 (259)
T COG3568 211 FPSNTP----LLRLDRIFVSKELAI 231 (259)
T ss_pred CCCCCc----cccccEEEecCcccE
Confidence 877764 348999999875543
No 9
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.87 E-value=6e-21 Score=178.68 Aligned_cols=200 Identities=20% Similarity=0.312 Sum_probs=124.0
Q ss_pred eEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEEec
Q 013328 30 ITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFKLA 109 (445)
Q Consensus 30 lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~~~ 109 (445)
|||+||||+... .+...++++|...+||||||||+......+. ...+...||..++.+
T Consensus 1 mri~t~Ni~g~~-------------------~~~~~~~~~l~~~~~DIi~LQE~~~~~~~~~---~~~~~~~g~~~~~~~ 58 (254)
T TIGR00195 1 MKIISWNVNGLR-------------------ARLHKGLAWLKENQPDVLCLQETKVQDEQFP---LEPFHKEGYHVFFSG 58 (254)
T ss_pred CEEEEEEcCcHH-------------------HhHHHHHHHHHhcCCCEEEEEecccchhhCC---HHHhhcCCcEEEEec
Confidence 699999998542 1335689999999999999999964332221 233344688776654
Q ss_pred CCCCCCceEEEEEecCcceEEeeEEEEecCCCCceeeeecccccccccccccCCCCceEEEEEeeeeCCC--CCCChhhH
Q 013328 110 RTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPH--DSSLSLVR 187 (445)
Q Consensus 110 ~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~~~~--~~~~~~~R 187 (445)
. ....|+||++|...+.+. ..+.... .+..+..+.. .+ ..+.++|+|+.... +......|
T Consensus 59 ~--~g~~Gvailsr~~~~~~~--~~~~~~~-~~~~~r~i~~---------~~----~~~~l~~~~~p~~~~~~~~~~~~r 120 (254)
T TIGR00195 59 Q--KGYSGVAIFSKEEPLSVR--RGFGVEE-EDAEGRIIMA---------EF----DSFLVINGYFPNGSRDDSEKLPYK 120 (254)
T ss_pred C--CCcceEEEEEcCCcceEE--ECCCCcc-cccCCCEEEE---------EE----CCEEEEEEEccCCCCCCCccHHHH
Confidence 3 445699999654322221 1111111 0111121111 11 24899999885421 11123446
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCc--------------------chhHhhhhCCCcccccccccCCC
Q 013328 188 LHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDTAHQYTD 247 (445)
Q Consensus 188 ~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~d~~~~~~~~~~ 247 (445)
..+...+.+.+.++.. .+.|+|+|||||..+.. ..++.+.+.|++|+|+..++.
T Consensus 121 ~~~~~~l~~~~~~~~~----~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~-- 194 (254)
T TIGR00195 121 LQWLEALQNYLEKLVD----KDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPD-- 194 (254)
T ss_pred HHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCC--
Confidence 6777777777766533 46799999999998865 246777778999999987765
Q ss_pred CCCCcceeccCC---CCcccccceeeecCCc
Q 013328 248 ADAHKWVSHRNH---RGNICGVDFIWLLNPN 275 (445)
Q Consensus 248 ~~~~t~~~~~~~---~~~~~rIDyi~~~~~~ 275 (445)
...+||..++.. .+...||||||+++..
T Consensus 195 ~~~~T~~~~~~~~~~~~~g~RID~i~~s~~~ 225 (254)
T TIGR00195 195 EGAYSWWDYRTKARDRNRGWRIDYFLVSEPL 225 (254)
T ss_pred CCCCcccCCcCCccccCCceEEEEEEECHHH
Confidence 235777665422 1335699999996544
No 10
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.86 E-value=5.3e-21 Score=176.88 Aligned_cols=199 Identities=19% Similarity=0.285 Sum_probs=121.8
Q ss_pred eEEEeeccccccccCCCCccccCCCccCChhhHH-HHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEEe
Q 013328 30 ITCTTFNILAPIYKRLSNENCRESDCRAYWFGRN-QRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFKL 108 (445)
Q Consensus 30 lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~-~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~~ 108 (445)
|||+||||.+.. .|. ..+.++|.+.+||||||||++.....+. +...||..++.
T Consensus 1 mki~swNVNgir-------------------~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~~------~~~~gY~~~~~ 55 (250)
T PRK13911 1 MKLISWNVNGLR-------------------ACMTKGFMDFFNSVDADVFCIQESKMQQEQNT------FEFKGYFDFWN 55 (250)
T ss_pred CEEEEEEeCChh-------------------HhhhhhHHHHHHhcCCCEEEEEeecccccccc------cccCCceEEEE
Confidence 699999999662 123 3688999999999999999976554321 23458876654
Q ss_pred cCCCCCCceEEEEEecCcceEEeeEEEEecCC-CCceeeeecccccccccccccCCCCceEEEEEeeeeCCCCCCChhhH
Q 013328 109 ARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDF-GDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSLVR 187 (445)
Q Consensus 109 ~~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~~~~~~~~~~~R 187 (445)
........|+||++|.+...+. ..+... .+..++.+... -..++|+|+ |.|++.. ...|
T Consensus 56 ~~~~kgy~GVAi~~k~~~~~v~----~~~~~~~~d~eGR~I~~~-------------~~~~~l~nv--Y~Pn~~~-~~~r 115 (250)
T PRK13911 56 CAIKKGYSGVVTFTKKEPLSVS----YGINIEEHDKEGRVITCE-------------FESFYLVNV--YTPNSQQ-ALSR 115 (250)
T ss_pred ecccCccceEEEEEcCCchheE----EcCCCCcccccCCEEEEE-------------ECCEEEEEE--EecCCCC-CCcc
Confidence 3333455699999665422221 111111 12223322211 135999999 6776532 2335
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCc--------------------chhHhhhhCCCcccccccccCCC
Q 013328 188 LHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDTAHQYTD 247 (445)
Q Consensus 188 ~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~d~~~~~~~~~~ 247 (445)
..+-....+.+.++.+.. ..+.|+|+|||||..+.. ..++.+...|++|+|+..++...
T Consensus 116 ~~~K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~~ 194 (250)
T PRK13911 116 LSYRMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNKE 194 (250)
T ss_pred hHHHHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCCC
Confidence 544444444444444433 245799999999997652 12455566799999999887532
Q ss_pred CCCCcceecc---CCCCcccccceeeecCCc
Q 013328 248 ADAHKWVSHR---NHRGNICGVDFIWLLNPN 275 (445)
Q Consensus 248 ~~~~t~~~~~---~~~~~~~rIDyi~~~~~~ 275 (445)
..+||.+++ .....+.||||||+++..
T Consensus 195 -~~yTww~~~~~~~~~n~g~RIDyilvs~~~ 224 (250)
T PRK13911 195 -KAYTWWSYMQQARDKNIGWRIDYFLCSNPL 224 (250)
T ss_pred -CCCccCCCcCCccccCCcceEEEEEEChHH
Confidence 346765544 123346799999997655
No 11
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=1.2e-20 Score=176.90 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=121.2
Q ss_pred eEEEeeccccccccCCCCccccCCCccCChhhHHHHH-HHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEEe
Q 013328 30 ITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRI-LDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFKL 108 (445)
Q Consensus 30 lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i-~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~~ 108 (445)
|||+||||+... .+.+.+ +++|.+.+||||||||++.....+ ....+...||.+++.
T Consensus 1 lri~t~Nv~g~~-------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~---~~~~~~~~g~~~~~~ 58 (255)
T TIGR00633 1 MKIISWNVNGLR-------------------ARLHKLFLDWLKEEQPDVLCLQETKVADEQF---PAELFEELGYHVFFH 58 (255)
T ss_pred CEEEEEecccHH-------------------HHhhccHHHHHHhcCCCEEEEEeccCchhhC---CHhHhccCCceEEEe
Confidence 699999998552 123455 899999999999999996432111 122334468877665
Q ss_pred cCCCCCCceEEEEEecCcceEEeeEE-EEecCCCCceeeeecccccccccccccCCCCceEEEEEeeeeCCC--CCCChh
Q 013328 109 ARTNNRGDGLLTAVHKDYFRVVNYRD-LLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPH--DSSLSL 185 (445)
Q Consensus 109 ~~~~~~~~G~ai~~~s~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~~~~--~~~~~~ 185 (445)
........|+||+ ++ +++..... +.... .+..+..+.+ ..+.+.|+++|+..+. +.....
T Consensus 59 ~~~~~~~~G~ail--sr-~~~~~~~~~~~~~~-~~~~~r~l~~-------------~~~~~~i~~vy~p~~~~~~~~~~~ 121 (255)
T TIGR00633 59 GAKSKGYSGVAIL--SK-VEPLDVRYGFGGEE-HDEEGRVITA-------------EFDGFTVVNVYVPNGGSRGLERLE 121 (255)
T ss_pred ecccCCcceEEEE--Ec-CCcceEEECCCCCc-ccCCCcEEEE-------------EECCEEEEEEEccCCCCCCchhHH
Confidence 4443345699999 44 44433222 11111 0111111111 1246999999885533 111224
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCc--------------------chhHhhhhCCCcccccccccC
Q 013328 186 VRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDTAHQY 245 (445)
Q Consensus 186 ~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~d~~~~~~~~ 245 (445)
.|..+...+.+.+.+... .+.|+|+|||||+.+.. ..++.+.+.|+.|+|+..++.
T Consensus 122 ~r~~~~~~l~~~~~~~~~----~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 197 (255)
T TIGR00633 122 YKLQFWDALFQYYEKELD----AGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFNPD 197 (255)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhCCC
Confidence 566677767666554332 45799999999998742 235666678999999887654
Q ss_pred CCCCCCcceeccC---CCCcccccceeeecCC
Q 013328 246 TDADAHKWVSHRN---HRGNICGVDFIWLLNP 274 (445)
Q Consensus 246 ~~~~~~t~~~~~~---~~~~~~rIDyi~~~~~ 274 (445)
.+ ..+||..+.. ......||||||+++.
T Consensus 198 ~~-~~~T~~~~~~~~~~~~~~~rID~i~~s~~ 228 (255)
T TIGR00633 198 TE-GAYTWWDYRSGARDRNRGWRIDYFLVSEP 228 (255)
T ss_pred CC-CcCcCcCCccCccccCCceEEEEEEECHH
Confidence 32 2467765542 1123469999999653
No 12
>PRK05421 hypothetical protein; Provisional
Probab=99.82 E-value=3.7e-19 Score=166.81 Aligned_cols=167 Identities=19% Similarity=0.085 Sum_probs=95.9
Q ss_pred CCceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEE
Q 013328 27 QPCITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNF 106 (445)
Q Consensus 27 ~~~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 106 (445)
.++||||||||+..... +....++.| ..+|||||||||+... .. ...+...++.+.
T Consensus 41 ~~~lri~t~NI~~~~~~------------------~~~~~l~~l-~~~~DiI~LQEv~~~~-~~----~~~~~~~~~~~~ 96 (263)
T PRK05421 41 EERLRLLVWNIYKQQRA------------------GWLSVLKNL-GKDADLVLLQEAQTTP-EL----VQFATANYLAAD 96 (263)
T ss_pred CCceeEEEEEccccccc------------------cHHHHHHHh-ccCCCEEEEEecccCc-ch----HHHhhcccchHH
Confidence 45799999999965310 123455555 8899999999996332 11 122222233322
Q ss_pred Ee--cCCCCCCceEEEEEecCcceEEeeEEEEecCCCCceeeeecccccccccccccCC-CCceEEEEEeeeeCCCCCCC
Q 013328 107 KL--ARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGD-LRQEILIVNTHLLFPHDSSL 183 (445)
Q Consensus 107 ~~--~~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~v~n~HL~~~~~~~~ 183 (445)
+. .......+|+||+ |+ +|+.....+........ ..+....+.+.. .|+.+.|+||||.++.. .
T Consensus 97 ~~~~~~~~~~~~GvaiL--SR-~pi~~~~~~~~~~~~~~--------~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~--~ 163 (263)
T PRK05421 97 QAPAFVLPQHPSGVMTL--SK-AHPVYCCPLREREPWLR--------LPKSALITEYPLPNGRTLLVVNIHAINFSL--G 163 (263)
T ss_pred hccccccCCCccceeEe--ee-cccceeeccCCCCcccc--------CcceeEEEEEEeCCCCEEEEEEECccccCc--C
Confidence 21 1123346799999 88 88876544421111000 001111123333 46679999999965321 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcc--hhHhhh-hCCCcc
Q 013328 184 SLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGH--VYKFLR-SQGFVS 237 (445)
Q Consensus 184 ~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~--~~~~l~-~~g~~d 237 (445)
...|..|+..+.+.+.. ...|+|||||||+.+... .++.+. ..|+.+
T Consensus 164 ~~~r~~q~~~l~~~~~~-------~~~p~Il~GDFN~~~~~~~~~l~~~~~~~~l~~ 213 (263)
T PRK05421 164 VDVYSKQLEPIGDQIAH-------HSGPVILAGDFNTWSRKRMNALKRFARELGLKE 213 (263)
T ss_pred hHHHHHHHHHHHHHHHh-------CCCCEEEEcccccCcccchHHHHHHHHHcCCCc
Confidence 35688888888777754 356999999999976532 344333 335543
No 13
>PTZ00297 pantothenate kinase; Provisional
Probab=99.76 E-value=2.8e-17 Score=182.78 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=106.7
Q ss_pred CCceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhc-CCCcEEEEeecccCh---------hhHHHHHHH
Q 013328 27 QPCITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLY-ERSSIICLQEFWVGN---------EELVDMYEK 96 (445)
Q Consensus 27 ~~~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~-~~~DII~LQEv~~~~---------~~~~~~l~~ 96 (445)
..+||||||||+.+... + ..| ..+.+...|.. .+|||||||||.... ..+...+..
T Consensus 8 ~~~l~VlTyNv~~~~~~------~------~~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~ 73 (1452)
T PTZ00297 8 CAQARVLSYNFNILPRG------C------GGF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVD 73 (1452)
T ss_pred CCceEEEEEEccccCCC------c------ccc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHH
Confidence 45799999999855210 0 112 13677778887 478999999995321 113345566
Q ss_pred HhhccCccEEEecCCCC----------CCceEEEEEecCcceEEeeEEEEecCCCCceeeeecccccccccccccCCC--
Q 013328 97 RLSDAGYVNFKLARTNN----------RGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDL-- 164 (445)
Q Consensus 97 ~l~~~gy~~~~~~~~~~----------~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (445)
.+...||.++...+... ...|+||+ || |||.....+.++........ ..+....+.+..+
T Consensus 74 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL--SR-~PI~~~~~~~l~~~~~~~~~-----~~RG~L~a~I~vp~~ 145 (1452)
T PTZ00297 74 ELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA--SR-FPIWQRGSYTFRNHERGEQS-----VRRGCLFAEVEVPLA 145 (1452)
T ss_pred HHHhcCCceeEeecCccccccccCccccCCEEEEE--EC-CChhhceeeecCcccccccc-----cccceEEEEEEcccc
Confidence 66667887665443331 34599999 99 99999999988753211000 0011111333322
Q ss_pred ---CceEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHc-----CCCCCcEEEeecCCCC
Q 013328 165 ---RQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEH-----NLKPIPIILCGDWNGS 221 (445)
Q Consensus 165 ---g~~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~-----~~~~~pvIl~GDFN~~ 221 (445)
++.+.|+||||.+..+. ..|.+|++.+.++++..++.. ...+.|+|||||||+.
T Consensus 146 ~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 146 EGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred CCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 35899999999764332 458888888888877522211 1255699999999965
No 14
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.73 E-value=5.4e-17 Score=143.41 Aligned_cols=209 Identities=15% Similarity=0.114 Sum_probs=141.6
Q ss_pred CceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccEEE
Q 013328 28 PCITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVNFK 107 (445)
Q Consensus 28 ~~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 107 (445)
.-++++||||..+. ......|.+++...|+-++|||||||||- +...+.+.+. . ..|..++
T Consensus 98 ~~~S~~~WnidgLd--------------ln~l~~RMrAv~H~i~l~sPdiiflQEV~---p~~y~~~~K~-~-s~y~i~~ 158 (349)
T KOG2756|consen 98 SMFSLITWNIDGLD--------------LNNLSERMRAVCHYLALYSPDVIFLQEVI---PPYYSYLKKR-S-SNYEIIT 158 (349)
T ss_pred cEEEEEEeeccccc--------------cchHHHHHHHHHHHHHhcCCCEEEEeecC---chhhHHHHHh-h-hheeEEE
Confidence 45788888887552 11234589999999999999999999993 3444555552 2 2455554
Q ss_pred ecCCCCCCceEEEEEecCcceEEeeEEEEecCCC-CceeeeecccccccccccccCCCCceEEEEEeeeeCCCCCCChhh
Q 013328 108 LARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFG-DRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSLV 186 (445)
Q Consensus 108 ~~~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~~~~~~~~~~~ 186 (445)
... ....+.+++.+|+ +.+.+...+.|+... .+... .+...++|.++.+.|+||.++..+ ...
T Consensus 159 ~~~--~~~~~~~~l~~s~-~~Vks~~~i~F~NS~M~R~L~-----------I~Ev~v~G~Kl~l~tsHLEStr~h--~P~ 222 (349)
T KOG2756|consen 159 GHE--EGYFTAIMLKKSR-VKVKSQEIIPFPNSKMMRNLL-----------IVEVNVSGNKLCLMTSHLESTRGH--APE 222 (349)
T ss_pred ecc--ceeeeeeeeehhh-cCccccceeccCcchhhheeE-----------EEEEeecCceEEEEeccccCCCCC--ChH
Confidence 322 2234666666677 888888888776653 12222 244556889999999999986643 467
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhhhhCCCcccccccccCCCCCCCcceeccCCCC--c--
Q 013328 187 RLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNHRG--N-- 262 (445)
Q Consensus 187 R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~~~~~~~t~~~~~~~~~--~-- 262 (445)
|..|....++.+++.+..+ ++..||++||+|- .+..+-+.-.-.|++|+|..+... +....||.+..|... .
T Consensus 223 r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~Nl-rD~ev~r~~lPD~~vDvWE~lg~p-~~~~FTwDT~~N~nl~G~~a 298 (349)
T KOG2756|consen 223 RMNQFKMVLKKMQEAIESL--PNATVIFGGDTNL-RDREVTRCGLPDNIVDVWEFLGKP-KHCQFTWDTQMNSNLGGTAA 298 (349)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCceEEEcCcccc-hhhhcccCCCCchHHHHHHHhCCC-CcCceeeecccCcccchhHH
Confidence 9999998889998888765 7778999999997 333333322345778888887632 234688988775422 1
Q ss_pred -ccccceeeecCCc
Q 013328 263 -ICGVDFIWLLNPN 275 (445)
Q Consensus 263 -~~rIDyi~~~~~~ 275 (445)
..|+|.||.+...
T Consensus 299 ~k~RfDRi~~r~~~ 312 (349)
T KOG2756|consen 299 CKLRFDRIFFRAAA 312 (349)
T ss_pred HHHHHHHHhhhhhh
Confidence 2389999986543
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.73 E-value=4.7e-16 Score=144.52 Aligned_cols=169 Identities=15% Similarity=0.075 Sum_probs=105.6
Q ss_pred CceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhc---cCcc
Q 013328 28 PCITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSD---AGYV 104 (445)
Q Consensus 28 ~~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~---~gy~ 104 (445)
..|||+||||+.+. .....|..|.+.|++.|+ ++|||++|||...+......+...|.. .+|.
T Consensus 16 ~~l~I~SfNIr~fg------------d~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~ 81 (276)
T smart00476 16 ASLRICAFNIQSFG------------DSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYS 81 (276)
T ss_pred CcEEEEEEECcccC------------CccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCce
Confidence 46999999999552 133469999999999998 789999999954332222233333332 3687
Q ss_pred EEEecCCCC--CCceEEEEEecCcceEEeeEEEEecCCCCceeeeecccccccccccccCC-CCceEEEEEeeeeCCCCC
Q 013328 105 NFKLARTNN--RGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGD-LRQEILIVNTHLLFPHDS 181 (445)
Q Consensus 105 ~~~~~~~~~--~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~v~n~HL~~~~~~ 181 (445)
++..++.+. .++-.+++||++++.+++...+ ++.+. +........+.+...+... .+..|.++++|+..
T Consensus 82 ~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~--~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p---- 153 (276)
T smart00476 82 YVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCE--CGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTP---- 153 (276)
T ss_pred EEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCC--CccccccccceEEEEEeCCCCCccEEEEEecCCh----
Confidence 776655433 3457999999999998876544 44221 0000000001111122222 34689999999943
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcC
Q 013328 182 SLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKR 223 (445)
Q Consensus 182 ~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~ 223 (445)
..+.+++..|.+.+....++. ...|+||+||||+.++
T Consensus 154 ---~~~~~e~~aL~~v~~~~~~~~--~~~~villGDFNa~~~ 190 (276)
T smart00476 154 ---EAAVAEIDALYDVYLDVRQKW--GTEDVIFMGDFNAGCS 190 (276)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh--ccCCEEEEccCCCCCC
Confidence 235566666666554444433 5689999999999764
No 16
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.72 E-value=9.8e-17 Score=148.41 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCc-cEEEecCCCC----CCceEEEEEecCcceEEeeEEEE
Q 013328 62 RNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGY-VNFKLARTNN----RGDGLLTAVHKDYFRVVNYRDLL 136 (445)
Q Consensus 62 R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy-~~~~~~~~~~----~~~G~ai~~~s~~~~i~~~~~~~ 136 (445)
+...|++.|...+|||||||||+. ......+...+....+ .......... ...|++|++|.............
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~ 94 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVRN--DDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSL 94 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEES--HHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecchh--hhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccccccccc
Confidence 556699999999999999999952 2334444455554333 3333322222 35699999776533222222222
Q ss_pred ecCCCCceeeeecccccccccccccCCCCceEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEee
Q 013328 137 FNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCG 216 (445)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~G 216 (445)
.................. +.....+++|+|+++|+.+ ....|..+...+.+.+....... ...|+||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~v~~~H~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~G 163 (249)
T PF03372_consen 95 FSKPGIRIFRRSSKSKGI----VPVSINGKPITVVNVHLPS-----SNDERQEQWRELLARIQKIYADN--PNEPVIVMG 163 (249)
T ss_dssp ESSSTTCEEEEEEEEEEE----EEEEEETEEEEEEEEETTS-----HHHHHHHHHHHHHHHHHHHHHTS--SCCEEEEEE
T ss_pred cccccccccccccccccc----ccccccceEEEeeeccccc-----cchhhhhhhhhhhhhhhhccccc--ccceEEEEe
Confidence 222221111111000000 0000117899999999854 23445555667778777766531 223799999
Q ss_pred cCCCCcCc
Q 013328 217 DWNGSKRG 224 (445)
Q Consensus 217 DFN~~p~s 224 (445)
|||+.+.+
T Consensus 164 DfN~~~~~ 171 (249)
T PF03372_consen 164 DFNSRPDS 171 (249)
T ss_dssp E-SS-BSS
T ss_pred ecccCCcc
Confidence 99998865
No 17
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.70 E-value=5.4e-17 Score=155.89 Aligned_cols=199 Identities=25% Similarity=0.437 Sum_probs=136.3
Q ss_pred CCCceEEEeeccccccccCCCCc-cccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCcc
Q 013328 26 QQPCITCTTFNILAPIYKRLSNE-NCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYV 104 (445)
Q Consensus 26 ~~~~lrvlT~NV~~~~~~~~~~~-~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~ 104 (445)
+..+++|+|||+++..|.....+ +| ......|..|+..+.+.|...+||||||||| .++.+.+...|...||.
T Consensus 16 ~~~~~~v~s~n~l~~~~~~~~~~~~~--~~~~~~w~~r~~~~~~ei~~~~ad~icLqev----~~~~~~~~p~l~~~gY~ 89 (361)
T KOG0620|consen 16 QGETFTVLSYNILSQLYATSKLYMYC--PSWALSWEYRRQLLLEEILNYNADILCLQEV----DRYHDFFSPELEASGYS 89 (361)
T ss_pred CCceEEeechhhhhhhhcccCCCccc--chhhccHHHHHHHHHHHHhCCCcceeecchh----hHHHHHccchhhhcCCc
Confidence 33489999999999987776655 33 3456789999999999999999999999999 46777888888888999
Q ss_pred EEEecCC------CCCCceEEEEEecCcceEEeeEEEEecCCCCc-----ee---eeeccccccc-ccccccCCCCceEE
Q 013328 105 NFKLART------NNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDR-----VA---QLLHVELIDP-FSQCRNGDLRQEIL 169 (445)
Q Consensus 105 ~~~~~~~------~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~-----~~---~~~~~~~~~~-~~~~~~~~~g~~v~ 169 (445)
..+..++ ....+||||++|.++|.++....+.++..... .. ....+..... +..+... .+..+.
T Consensus 90 g~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~~L~~~-~~~~~~ 168 (361)
T KOG0620|consen 90 GIFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLVSLKAE-LGNMVS 168 (361)
T ss_pred ceeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhhhhhhh-cCCcee
Confidence 9988764 44578999999999999987776666443210 00 0000000000 0001111 122332
Q ss_pred ----EEEeeeeCCCCCCChhhHHHHHHHHHHHHH----HHHHH-------cCCCCCcEEEeecCCCCcCcchhHhhhhC
Q 013328 170 ----IVNTHLLFPHDSSLSLVRLHQVYKILQHVE----SYQKE-------HNLKPIPIILCGDWNGSKRGHVYKFLRSQ 233 (445)
Q Consensus 170 ----v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~----~~~~~-------~~~~~~pvIl~GDFN~~p~s~~~~~l~~~ 233 (445)
++|+|+.+.. .+...++.|+..+...++ +..+. ......|+++|||||+.|.++.|..+...
T Consensus 169 ~~~~~~n~h~~~~~--~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~~~~ 245 (361)
T KOG0620|consen 169 LPHLLLNTHILWDL--PYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPLSPVYALLASG 245 (361)
T ss_pred eccccccceeccCC--CccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCCccceeecccC
Confidence 4789998844 456779999998877632 11111 11245789999999999999988887433
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.55 E-value=7.4e-14 Score=127.58 Aligned_cols=195 Identities=14% Similarity=0.064 Sum_probs=109.7
Q ss_pred CceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcC-CCcEEEEeecccChhh------HHHH------H
Q 013328 28 PCITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYE-RSSIICLQEFWVGNEE------LVDM------Y 94 (445)
Q Consensus 28 ~~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~-~~DII~LQEv~~~~~~------~~~~------l 94 (445)
..++|.|||+++.... ...+|.. .+.+.|... ++||+++||+...... .... .
T Consensus 23 ~~~~~~twn~qg~s~~-----------~~~kw~~---~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v 88 (271)
T PRK15251 23 EDYKVATWNLQGSSAS-----------TESKWNV---NVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPI 88 (271)
T ss_pred ccceEEEeecCCCCCC-----------Chhhhhh---hHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCc
Confidence 4699999999965321 2234542 344555554 6999999999421100 0000 0
Q ss_pred HH---Hhh---ccCccEEEecCCC--CCCceEEEEEecCcceEEeeEEEEecCCCCceeeeecccccccccccccCCCCc
Q 013328 95 EK---RLS---DAGYVNFKLARTN--NRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQ 166 (445)
Q Consensus 95 ~~---~l~---~~gy~~~~~~~~~--~~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (445)
.+ .++ .-++.++|..+.+ ....|+||+ || ++..+...+..+....+... ..++ +
T Consensus 89 ~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl--Sr-~~a~~~~~l~~p~~~~Rpil-----------gi~i--~-- 150 (271)
T PRK15251 89 DEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV--SR-RRADEVIVLRPPTVASRPII-----------GIRI--G-- 150 (271)
T ss_pred ccEEEEccCccCCCceEEEEecccCCCCceeEEEE--ec-ccccceEEecCCCCcccceE-----------EEEe--c--
Confidence 00 011 1234444443322 345699999 88 77776666654422222111 1222 2
Q ss_pred eEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHH-HHHHHcCCCCCcEEEeecCCCCcCcchhHhhhhCCCcccccccccC
Q 013328 167 EILIVNTHLLFPHDSSLSLVRLHQVYKILQHVE-SYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQY 245 (445)
Q Consensus 167 ~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~-~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~ 245 (445)
.+.++++|+.+.. ...|.++++.+.+... .. ...|++||||||..|++..+....+. +.......
T Consensus 151 ~~~ffstH~~a~~----~~da~aiV~~I~~~f~~~~------~~~pw~I~GDFNr~P~sl~~~l~~~~-~~~~~~iv--- 216 (271)
T PRK15251 151 NDVFFSIHALANG----GTDAGAIVRAVHNFFRPNM------RHINWMIAGDFNRSPDRLESTLDTEH-LRNRVNIV--- 216 (271)
T ss_pred CeEEEEeeecCCC----CccHHHHHHHHHHHHhhcc------CCCCEEEeccCCCCCcchhhhhcchh-cccccEEe---
Confidence 3799999997642 2347788888777765 21 34799999999999999866665321 22111111
Q ss_pred CCCCCCcceeccCCCCcccccceeeecCCcc
Q 013328 246 TDADAHKWVSHRNHRGNICGVDFIWLLNPNK 276 (445)
Q Consensus 246 ~~~~~~t~~~~~~~~~~~~rIDyi~~~~~~~ 276 (445)
.+..+|++ ...+|||++..+...
T Consensus 217 -~p~~pT~~-------s~~~IDYiv~~~s~~ 239 (271)
T PRK15251 217 -APTEPTQR-------SGGTLDYAVTGNSNQ 239 (271)
T ss_pred -CCCCCCCC-------CCCeeEEEEecCccc
Confidence 12233432 245799999975543
No 19
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.48 E-value=5.1e-13 Score=134.46 Aligned_cols=255 Identities=13% Similarity=0.138 Sum_probs=161.2
Q ss_pred CCCCCceEEEeeccccccc-cCCCCc------cccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccC----h-----
Q 013328 24 HQQQPCITCTTFNILAPIY-KRLSNE------NCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVG----N----- 87 (445)
Q Consensus 24 ~~~~~~lrvlT~NV~~~~~-~~~~~~------~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~----~----- 87 (445)
....+.|||.+|||++.+- ...... .|+.+....+....+.+++..|...+|||++|-|+... .
T Consensus 458 ~~v~G~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai 537 (798)
T COG2374 458 PDVGGSLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAI 537 (798)
T ss_pred cccCceeeeeeeehhhhhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHHH
Confidence 4456789999999998753 111111 23445556677788899999999999999999999532 1
Q ss_pred hhHHHHHHHHhhcc-CccEEEecCCCC---CCceEEEEEecCcceEEeeEEEEecCCCCceeeeeccccccc-ccccccC
Q 013328 88 EELVDMYEKRLSDA-GYVNFKLARTNN---RGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDP-FSQCRNG 162 (445)
Q Consensus 88 ~~~~~~l~~~l~~~-gy~~~~~~~~~~---~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 162 (445)
.++...|.+.++.- .|.++...+... ..-+++++|+..+..+.....+.-.+.-..+.....-....+ ...++..
T Consensus 538 ~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~~ 617 (798)
T COG2374 538 AQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQDL 617 (798)
T ss_pred HHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhhc
Confidence 12333344444443 465555443312 223789999988766665544421111000000000000001 1124455
Q ss_pred CCCceEEEEEeeeeCCCC------------CCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhh
Q 013328 163 DLRQEILIVNTHLLFPHD------------SSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFL 230 (445)
Q Consensus 163 ~~g~~v~v~n~HL~~~~~------------~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l 230 (445)
..+.+|+|+.-||.+... ..+...|.+|++.|..+++..... ..+.|++|.||||+...+.+++.|
T Consensus 618 ~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~--~~d~~~viLGD~N~y~~edpI~~l 695 (798)
T COG2374 618 SGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTG--KADADIVILGDFNDYAFEDPIQAL 695 (798)
T ss_pred cCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccc--ccCCCEEEEeccchhhhccHHHHH
Confidence 577789999999987322 134678999999999999864322 257789999999999999999999
Q ss_pred hhCCCcccccccccCCCCCCCcceeccCCCCcccccceeeecCCcccccccccchh
Q 013328 231 RSQGFVSSYDTAHQYTDADAHKWVSHRNHRGNICGVDFIWLLNPNKYRKLLKASWS 286 (445)
Q Consensus 231 ~~~g~~d~~~~~~~~~~~~~~t~~~~~~~~~~~~rIDyi~~~~~~~~~~~~~~s~~ 286 (445)
+..|+...-...+. ..+.++|...+ +...+||+|.+....++......|+
T Consensus 696 ~~aGy~~l~~~~~~--~~~~YSY~f~G----~~gtLDhaLas~sl~~~v~~a~ewH 745 (798)
T COG2374 696 EGAGYMNLAARFHD--AGDRYSYVFNG----QSGTLDHALASASLAAQVSGATEWH 745 (798)
T ss_pred hhcCchhhhhhccC--CCCceEEEECC----ccchHhhhhhhhhhhhhccCceeee
Confidence 99897743333322 23345554433 4567999999877777766666676
No 20
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.41 E-value=1e-12 Score=121.10 Aligned_cols=196 Identities=13% Similarity=0.022 Sum_probs=115.7
Q ss_pred CCCceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCccE
Q 013328 26 QQPCITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGYVN 105 (445)
Q Consensus 26 ~~~~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~ 105 (445)
.+..++++++|++..+ .. ..+++..|...++|+|.+||... .........-..++|..
T Consensus 85 ~~~~~~~l~~N~r~~n---~~----------------~~k~Lsl~~~~~~D~v~~~E~~~---~~~~~~~~l~~~yP~~~ 142 (309)
T COG3021 85 DQRLLWNLQKNVRFDN---AS----------------VAKLLSLIQQLDADAVTTPEGVQ---LWTAKVGALAAQYPAFI 142 (309)
T ss_pred cchhhhhhhhhccccC---cC----------------HHHHHHHHhhhCcchhhhHHHHH---HhHhHHHHHHHhCCcee
Confidence 3567999999988553 11 26788888888899999999831 22222222222244433
Q ss_pred EEecCCCCCCceEEEEEecCcceEEeeEE-EEecCCCCceeeeecccccccccccccCCCCceEEEEEeeee-CCCCCCC
Q 013328 106 FKLARTNNRGDGLLTAVHKDYFRVVNYRD-LLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQEILIVNTHLL-FPHDSSL 183 (445)
Q Consensus 106 ~~~~~~~~~~~G~ai~~~s~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~n~HL~-~~~~~~~ 183 (445)
.. ..+....+.+++ |++.++...+. .++....+.... .....+|+.+.|++.|.. ++-. .
T Consensus 143 ~~--~~~~~~~~~a~~--sr~~~~~~~~~e~~~~~pk~~~~t------------~~~~~~g~~l~v~~lh~~~~~~~--~ 204 (309)
T COG3021 143 LC--QHPTGVFTLAIL--SRRPCCPLTEAEPWLRLPKSALAT------------AYPLPDGTELTVVALHAVNFPVG--T 204 (309)
T ss_pred ec--CCCCCeeeeeec--cccccccccccCccccCCccceeE------------EEEcCCCCEEEEEeeccccccCC--c
Confidence 32 233355688888 65332221111 111111111111 223347899999999996 4332 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhhhhCCCcccccccccCCCCCCCcceeccCCCCcc
Q 013328 184 SLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNHRGNI 263 (445)
Q Consensus 184 ~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~d~~~~~~~~~~~~~~t~~~~~~~~~~~ 263 (445)
...| +|...+.+.+.. -..|+|++||||++|+|..++.+...|..+.+..++. . ...+|+.... .-..
T Consensus 205 ~~~~-~ql~~l~~~i~~-------~~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~aG~-~--~~~~~p~~~~-r~~g 272 (309)
T COG3021 205 DPQR-AQLLELGDQIAG-------HSGPVILAGDFNAPPWSRTAKRMAALGGLRAAPRAGL-W--EVRFTPDERR-RAFG 272 (309)
T ss_pred cHHH-HHHHHHHHHHHc-------CCCCeEEeecCCCcchhHHHHHHHHhcccccchhccC-C--ccccCHHHHh-hccC
Confidence 2234 677767666665 4579999999999999999999987766766555541 1 1233333221 1123
Q ss_pred cccceeeecC
Q 013328 264 CGVDFIWLLN 273 (445)
Q Consensus 264 ~rIDyi~~~~ 273 (445)
..|||||+++
T Consensus 273 ~PIDhvf~rg 282 (309)
T COG3021 273 LPIDHVFYRG 282 (309)
T ss_pred CCcceeeecC
Confidence 4699999987
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.32 E-value=2.2e-12 Score=98.80 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=62.1
Q ss_pred hhccchHHHhcccccc-CCCCCcccHHHHHHHHHH-hccCCCCCCCCH-HHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 298 RRASLTETDAFAFLKA-DNDGDYITYSGFCEALEQ-LNLTGHKHGLAD-EETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~-~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
......+.++|+.||+ +++ |+|+.+||+.+|.. +| ..+++ +++++||+.+|.|+||.|+|+||+.+|..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3456789999999999 999 99999999999999 88 66787 89999999999999999999999976643
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.30 E-value=9e-12 Score=104.88 Aligned_cols=80 Identities=29% Similarity=0.483 Sum_probs=71.8
Q ss_pred HHHHHHHHHhh--hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHH
Q 013328 287 EAVFGMFKCLL--RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYK 364 (445)
Q Consensus 287 ~~v~~~~~~~~--~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 364 (445)
..|+.++.... ....++++++|+.||+|++ |+|+..||+.+|+.+| ..++++++++|++.+|.|+||.|+|+
T Consensus 75 ~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~i~~~ 148 (160)
T COG5126 75 PEFLTVMSVKLKRGDKEEELREAFKLFDKDHD-GYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGEIDYE 148 (160)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCceEeHH
Confidence 56777776666 3556899999999999999 9999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhc
Q 013328 365 EFQQRIWK 372 (445)
Q Consensus 365 eF~~~~~~ 372 (445)
||++.+..
T Consensus 149 eF~~~~~~ 156 (160)
T COG5126 149 EFKKLIKD 156 (160)
T ss_pred HHHHHHhc
Confidence 99976654
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.23 E-value=2e-11 Score=93.71 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=61.1
Q ss_pred hhccchHHHhccccc-cCCCCC-cccHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 298 RRASLTETDAFAFLK-ADNDGD-YITYSGFCEALEQ-----LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D-~~~~~G-~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
......+.++|+.|| +||+ | .|+.+||+.+|+. +| ...++++++.+++.+|.|+||.|+|+||+..+
T Consensus 4 e~~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~~lg-----~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSHFLE-----EIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHHHhc-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345678999999998 7999 9 5999999999999 88 77889999999999999999999999999655
Q ss_pred h
Q 013328 371 W 371 (445)
Q Consensus 371 ~ 371 (445)
.
T Consensus 78 ~ 78 (88)
T cd05027 78 A 78 (88)
T ss_pred H
Confidence 3
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.22 E-value=2.9e-11 Score=88.09 Aligned_cols=61 Identities=28% Similarity=0.534 Sum_probs=53.2
Q ss_pred HHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHH----HHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 304 ETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADE----ETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 304 ~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
++++|+.+|+|++ |+|+.+||+.++..++ ...+++ .++.+++.+|.|+||.|+|+||++++
T Consensus 2 l~~~F~~~D~d~~-G~i~~~el~~~~~~~~-----~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGD-GYISKEELRRALKHLG-----RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHTT-----SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCcc-CCCCHHHHHHHHHHhc-----ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6889999999999 9999999999999998 545454 45566999999999999999999654
No 25
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.17 E-value=1.8e-11 Score=103.08 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=100.3
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhcc----
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKT---- 373 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~---- 373 (445)
.++..+++++|..+|+|++ |.|+..||..+|+.+| .+++++++.+|+..+|. ++|.|+|.+|+..|-..
T Consensus 16 ~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSD-GLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred HHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 6788999999999999999 9999999999999999 88999999999999999 99999999999766332
Q ss_pred -------CccccccccCCcccccccccccccccCeeeeccccCCcccccCCCCCCCCCCCCcceeE
Q 013328 374 -------TWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLTV 432 (445)
Q Consensus 374 -------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (445)
.+++-.|.+..|.|..++...-...+|-+.+.+. |.+ -...|+.+.||.++-
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~dee-----v~~--ll~~~d~d~dG~i~~ 147 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEE-----VEK--LLKEYDEDGDGEIDY 147 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHH-----HHH--HHHhcCCCCCceEeH
Confidence 2345668888899988887776777776655443 333 445788899998874
No 26
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-10 Score=99.64 Aligned_cols=79 Identities=29% Similarity=0.493 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhh--h----ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCce
Q 013328 287 EAVFGMFKCLLR--R----ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGV 360 (445)
Q Consensus 287 ~~v~~~~~~~~~--~----~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~ 360 (445)
..|+.++..... . ...+++++|+.||+|++ |+|+.+||+.+|..+| ...+.++++.+++.+|.|+||.
T Consensus 64 ~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~-G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~ 137 (151)
T KOG0027|consen 64 EEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGD-GFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGK 137 (151)
T ss_pred HHHHHHHHhhhcccccccccHHHHHHHHHHHccCCC-CcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCe
Confidence 455555554441 1 24599999999999999 9999999999999999 8899999999999999999999
Q ss_pred eeHHHHHHHHh
Q 013328 361 VDYKEFQQRIW 371 (445)
Q Consensus 361 i~~~eF~~~~~ 371 (445)
|+|+||++.|.
T Consensus 138 i~f~ef~~~m~ 148 (151)
T KOG0027|consen 138 VNFEEFVKMMS 148 (151)
T ss_pred EeHHHHHHHHh
Confidence 99999997664
No 27
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.14 E-value=4.1e-11 Score=102.72 Aligned_cols=120 Identities=19% Similarity=0.277 Sum_probs=94.3
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhccC----
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTT---- 374 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~---- 374 (445)
....+++++|+.||+|++ |+|+..||..+|+.+| ..+++.++..++.++|.|++|.|+|+||+..+....
T Consensus 5 ~~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGD-GKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred HHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccc
Confidence 345679999999999999 9999999999999999 889999999999999999999999999997664322
Q ss_pred -----------ccccccccCCcccccccccccccccCeeeeccccCCcccccCCCCCCCCCCCCccee
Q 013328 375 -----------WSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLT 431 (445)
Q Consensus 375 -----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (445)
.+.-.|.+..|.+...|...-...+|...+ ..++.. .....|.+.||.++
T Consensus 79 ~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~-----~~e~~~--mi~~~d~d~dg~i~ 139 (151)
T KOG0027|consen 79 DEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT-----DEECKE--MIREVDVDGDGKVN 139 (151)
T ss_pred cccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC-----HHHHHH--HHHhcCCCCCCeEe
Confidence 123456777777887777777777776555 223333 44566777888773
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.11 E-value=1.6e-10 Score=90.02 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=58.0
Q ss_pred hhccchHHHhccccc-cCCCCC-cccHHHHHHHHHHh-ccCCC-CCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 298 RRASLTETDAFAFLK-ADNDGD-YITYSGFCEALEQL-NLTGH-KHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D-~~~~~G-~i~~~el~~~l~~~-g~~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
......+.++|+.|| +|++ | +|+..||+.+|... + +. ....++.+++++++++|.|+||.|+|+||+..+.
T Consensus 6 e~a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~--~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELT--DFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhH--HhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 456678899999998 7899 8 59999999999773 2 00 0334778999999999999999999999997653
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.09 E-value=1.8e-10 Score=88.41 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=60.0
Q ss_pred hhccchHHHhcccccc-CC-CCCcccHHHHHHHHHH---hccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 298 RRASLTETDAFAFLKA-DN-DGDYITYSGFCEALEQ---LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~-~~-~~G~i~~~el~~~l~~---~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.+....+.++|+.||. || + |+|+.+||+.+|.. +| ..+++++++++|+.+|.|++|.|+|+||+..+.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~-g~Is~~EL~~~l~~~~~lg-----~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDK-NTLSKKELKELIQKELTIG-----SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCC-CEECHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 4556778899999998 77 6 99999999999974 67 779999999999999999999999999997663
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.03 E-value=5.5e-10 Score=87.07 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=59.1
Q ss_pred hhccchHHHhccccc-cCCCCC-cccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 298 RRASLTETDAFAFLK-ADNDGD-YITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D-~~~~~G-~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
......++++|+.|| .+++ | +|+..||+.+|+. +|.. -...+++++++.+|+.+|.|++|.|+|+||+..+.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~~-~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSDF-LDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 345578999999997 9999 9 5999999999986 5510 00346889999999999999999999999996553
No 31
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.01 E-value=2.1e-10 Score=99.61 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=91.7
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc-----cCc
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK-----TTW 375 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~-----~~~ 375 (445)
...+...|...|+|+. |+|+.+||+.+|...+ +.+++.+.++.|+..+|.+.+|+|+|+||. .||. +.+
T Consensus 56 ~~~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~----~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~-~Lw~~i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRS-GRILAKELQQALSNGT----WSPFSIETCRLMISMFDRDNSGTIGFKEFK-ALWKYINQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCcccc-ccccHHHHHHHhhcCC----CCCCCHHHHHHHHHHhcCCCCCccCHHHHH-HHHHHHHHHHHH
Confidence 4567889999999999 9999999999998764 267899999999999999999999999998 6766 567
Q ss_pred cccccccCCcccccccccccccccCeeeecccc
Q 013328 376 SDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVL 408 (445)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 408 (445)
+...|++.+|.++..|...++..+||++++..+
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~ 162 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFY 162 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHH
Confidence 899999999999999999999999999887763
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.00 E-value=7.4e-10 Score=86.67 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=59.2
Q ss_pred hccchHHHhcccccc-CC-CCCcccHHHHHHHHHH-----hccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKA-DN-DGDYITYSGFCEALEQ-----LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~-~~-~~G~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.....++++|+.||. |+ + |+|+.+||+.+|+. +| ..+++++++.+++.+|.|++|.|+|+||+..+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~~lg-----~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSEFLK-----NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHHHhh-----ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345678999999997 97 8 99999999999986 45 568899999999999999999999999997664
Q ss_pred c
Q 013328 372 K 372 (445)
Q Consensus 372 ~ 372 (445)
.
T Consensus 79 ~ 79 (94)
T cd05031 79 G 79 (94)
T ss_pred H
Confidence 3
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.98 E-value=1.1e-09 Score=86.18 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=59.2
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.....+.++|+.+|.|++ |.|+.+||+.+|+.+| ++++++++++..+|.+++|.|+|+||+..+.
T Consensus 7 ~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~~~-------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLKSG-------LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 455678999999999999 9999999999999977 6789999999999999999999999996553
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.97 E-value=1.2e-09 Score=79.65 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=54.3
Q ss_pred HHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 305 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 305 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
+++|+.+|+|++ |.|+.+||+.+|..+| .++++++.++..+|.+++|.|+|+||+..+.
T Consensus 2 ~~~F~~~D~~~~-G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGD-GLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCC-CcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 578999999999 9999999999999988 5788999999999999999999999996553
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=2.4e-09 Score=88.17 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=70.2
Q ss_pred HHHHHHHHHhh--hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHH
Q 013328 287 EAVFGMFKCLL--RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYK 364 (445)
Q Consensus 287 ~~v~~~~~~~~--~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 364 (445)
+.+..++...+ +....++..+|+.+|.|++ |+|+..+|+.+.+.|| .+++++|++.|+.++|.|+||.|+-+
T Consensus 89 e~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~-Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevnee 162 (172)
T KOG0028|consen 89 EDFRRVMTVKLGERDTKEEIKKAFRLFDDDKT-GKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVNEE 162 (172)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHcccccCC-CCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhcccccccccHH
Confidence 55556655555 5677899999999999999 9999999999999999 99999999999999999999999999
Q ss_pred HHHHHHh
Q 013328 365 EFQQRIW 371 (445)
Q Consensus 365 eF~~~~~ 371 (445)
||.+.|-
T Consensus 163 EF~~imk 169 (172)
T KOG0028|consen 163 EFIRIMK 169 (172)
T ss_pred HHHHHHh
Confidence 9996553
No 36
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.93 E-value=2.4e-09 Score=82.28 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=58.4
Q ss_pred hhccchHHHhccc-cccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 298 RRASLTETDAFAF-LKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 298 ~~~~~~~~~~F~~-~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
......+..+|+. +|+++++|+|+.+||+.+|....-.-......+.+++++++.+|.|+||.|+|+||+..|..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3556778999999 78889823999999999998752000003456789999999999999999999999976643
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=6.6e-10 Score=91.43 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=84.7
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhccC----
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTT---- 374 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~---- 374 (445)
.+..+++.+|..||.+++ |+|+++||+.+++.+| ..+..+|+.+|+.++|+++.|.|+|++|++.|....
T Consensus 30 ~q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmralG-----FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMA-GKIDVEELKVAMRALG-----FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred HHHhhHHHHHHhhccCCC-CcccHHHHHHHHHHcC-----CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 455789999999999999 9999999999999999 778999999999999999999999999997764422
Q ss_pred -------ccccccccCCcccccccccccccccCeeeeccccCCcccccCCCCCCCCCCCCccee
Q 013328 375 -------WSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLT 431 (445)
Q Consensus 375 -------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (445)
++...|.+..|.+...+...-..++|=+++.+-+ .. .+++.|.+.+|.++
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El-----~e--MIeEAd~d~dgevn 160 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEEL-----ME--MIEEADRDGDGEVN 160 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHH-----HH--HHHHhccccccccc
Confidence 2233344444444444433333344444443332 22 34556666666543
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.89 E-value=5.4e-09 Score=72.65 Aligned_cols=49 Identities=33% Similarity=0.518 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 318 DYITYSGFCEALEQLNLTGHKHG-LADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
|.|+.+||+.+|..+| .. +++++++.++..+|.|++|.|+|+||+..+.
T Consensus 3 G~i~~~~~~~~l~~~g-----~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLG-----IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTT-----SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhC-----CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 9999999999998889 77 9999999999999999999999999997654
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.88 E-value=3.6e-09 Score=81.79 Aligned_cols=71 Identities=25% Similarity=0.288 Sum_probs=58.4
Q ss_pred hccchHHHhcccccc--CCCCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKA--DNDGDYITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~--~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
+....++++|+.||+ |++ |.|+.+||+.+++. +|.. ....++.++++.++..+|.+++|.|+|+||+..+.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~~-~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPNF-LKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhhh-ccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 456778999999999 899 99999999999986 5510 00224589999999999999999999999996553
No 40
>PTZ00183 centrin; Provisional
Probab=98.82 E-value=2.6e-09 Score=92.25 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=89.2
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc------
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK------ 372 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~------ 372 (445)
.....+..+|..+|.+++ |.|+..||..+|+.+| ..++.+++..++..+|.+++|.|+|+||+..+..
T Consensus 14 ~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGS-GTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred HHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 344678899999999999 9999999999999998 6688889999999999999999999999876532
Q ss_pred -----cCccccccccCCcccccccccccccccCeeeeccccCCcccccCCCCCCCCCCCCcceeE
Q 013328 373 -----TTWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLTV 432 (445)
Q Consensus 373 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (445)
...+...+.+..|.++..+........|..++ ..++.. +...++.+++|.|+.
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~-----~~~~~~--~~~~~d~~~~g~i~~ 145 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETIT-----DEELQE--MIDEADRNGDGEISE 145 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC-----HHHHHH--HHHHhCCCCCCcCcH
Confidence 12234556666666666555444444453322 223333 456788888998764
No 41
>PTZ00184 calmodulin; Provisional
Probab=98.79 E-value=3e-09 Score=90.76 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=89.0
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhcc-----
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKT----- 373 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~----- 373 (445)
.....+.+.|..+|.+++ |.|+.+||..++..+| ..++.+++..++..+|.+++|.|+|+||+..+...
T Consensus 8 ~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred HHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 445678899999999999 9999999999999998 66788899999999999999999999999766421
Q ss_pred ------CccccccccCCcccccccccccccccCeeeeccccCCcccccCCCCCCCCCCCCcceeE
Q 013328 374 ------TWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAVLFPPEVEKGRWPENYSLSDHARLTV 432 (445)
Q Consensus 374 ------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (445)
..+...|.+..|.+...+.......+|+.++.+. +.. ....+|.+.+|+|+.
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-----~~~--~~~~~d~~~~g~i~~ 139 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEE-----VDE--MIREADVDGDGQINY 139 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHH-----HHH--HHHhcCCCCCCcCcH
Confidence 2234445566666666665444444554433322 111 345678888888764
No 42
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.75 E-value=3.5e-08 Score=80.76 Aligned_cols=95 Identities=23% Similarity=0.273 Sum_probs=80.7
Q ss_pred cccceeeecCCcccccccccchhHHHHHHHHHhh--hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCC
Q 013328 264 CGVDFIWLLNPNKYRKLLKASWSEAVFGMFKCLL--RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGL 341 (445)
Q Consensus 264 ~rIDyi~~~~~~~~~~~~~~s~~~~v~~~~~~~~--~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~ 341 (445)
.-||.++-..+. +-.-..|+.++...+ ......|..+|+.||.+++ |+|..+.|+++|...| ..+
T Consensus 68 ~elDaM~~Ea~g-------PINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~-G~I~~d~lre~Ltt~g-----Dr~ 134 (171)
T KOG0031|consen 68 EELDAMMKEAPG-------PINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGS-GKIDEDYLRELLTTMG-----DRF 134 (171)
T ss_pred HHHHHHHHhCCC-------CeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCC-CccCHHHHHHHHHHhc-----ccC
Confidence 348888853222 123467888888888 5667899999999999999 9999999999999999 999
Q ss_pred CHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 342 ADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 342 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
+++||+.|++.+-.|..|.|+|.+|+..|.
T Consensus 135 ~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 135 TDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred CHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999999999999999999999996654
No 43
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.74 E-value=1.1e-08 Score=87.28 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=68.6
Q ss_pred HHHHHHHhhhhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHH
Q 013328 289 VFGMFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQ 368 (445)
Q Consensus 289 v~~~~~~~~~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 368 (445)
++.-+..+-+.++..+..+|+.+|.+.| |+|+..||+.+|.+|| .+.+.=-++.||++.|.|.||+|+|-||+
T Consensus 86 ~yteF~eFsrkqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLg-----apQTHL~lK~mikeVded~dgklSfrefl- 158 (244)
T KOG0041|consen 86 VYTEFSEFSRKQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLG-----APQTHLGLKNMIKEVDEDFDGKLSFREFL- 158 (244)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhC-----CchhhHHHHHHHHHhhcccccchhHHHHH-
Confidence 3444444447788899999999999999 9999999999999999 67777789999999999999999999998
Q ss_pred HHhccCc
Q 013328 369 RIWKTTW 375 (445)
Q Consensus 369 ~~~~~~~ 375 (445)
.|+.+..
T Consensus 159 LIfrkaa 165 (244)
T KOG0041|consen 159 LIFRKAA 165 (244)
T ss_pred HHHHHHh
Confidence 6766444
No 44
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.72 E-value=4.9e-08 Score=69.33 Aligned_cols=60 Identities=32% Similarity=0.578 Sum_probs=56.0
Q ss_pred HHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHH
Q 013328 304 ETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQR 369 (445)
Q Consensus 304 ~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 369 (445)
+..+|..+|.+++ |.|+.+|+..++..++ ...+.+++..++..+|.+++|.|+|+||+..
T Consensus 2 ~~~~f~~~d~~~~-g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGD-GTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 5678999999999 9999999999999998 7789999999999999999999999999854
No 45
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.68 E-value=5.7e-08 Score=78.17 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhhh----ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceee
Q 013328 287 EAVFGMFKCLLRR----ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVD 362 (445)
Q Consensus 287 ~~v~~~~~~~~~~----~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 362 (445)
+.|+.++..+.+. ..+.+.+-++.||++++ |+|...||+.+|..+| ..++++|++.++.-. .|.+|.|+
T Consensus 69 E~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~-eD~nG~i~ 141 (152)
T KOG0030|consen 69 EEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQ-EDSNGCIN 141 (152)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-----hhccHHHHHHHHccc-cccCCcCc
Confidence 5666766666522 22567778899999999 9999999999999999 999999999999764 67789999
Q ss_pred HHHHHHHHhc
Q 013328 363 YKEFQQRIWK 372 (445)
Q Consensus 363 ~~eF~~~~~~ 372 (445)
|+.|++.++.
T Consensus 142 YE~fVk~i~~ 151 (152)
T KOG0030|consen 142 YEAFVKHIMS 151 (152)
T ss_pred HHHHHHHHhc
Confidence 9999987753
No 46
>PF14658 EF-hand_9: EF-hand domain
Probab=98.68 E-value=7.1e-08 Score=68.15 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=55.1
Q ss_pred hccccccCCCCCcccHHHHHHHHHHhccCCCCC-CCCHHHHHHHHHHhcCCCC-ceeeHHHHHHHHh
Q 013328 307 AFAFLKADNDGDYITYSGFCEALEQLNLTGHKH-GLADEETKDLWVQADIDGN-GVVDYKEFQQRIW 371 (445)
Q Consensus 307 ~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~~~ 371 (445)
+|..||.++. |.|...+|+..|+.++ . .+++.+++.+..++|.++. |.|+|+.|+..|.
T Consensus 3 ~F~~fD~~~t-G~V~v~~l~~~Lra~~-----~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKT-GRVPVSDLITYLRAVT-----GRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCC-ceEeHHHHHHHHHHHc-----CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 7999999999 9999999999999998 5 7899999999999999988 9999999997663
No 47
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.67 E-value=4.1e-08 Score=79.13 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=55.1
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.....+..+|..+|.|+| |.|+.+||+.++ ++ ..+..++.++..+|.|+||.|+++||...++
T Consensus 45 ~~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~--l~-------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYD-GKLSHHELAPIR--LD-------PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCC-CcCCHHHHHHHH--cc-------chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 445678899999999999 999999999876 44 5577899999999999999999999997663
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.67 E-value=1.1e-08 Score=96.60 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=90.5
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc-----c
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK-----T 373 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~-----~ 373 (445)
+....++.+|+.||.+++ |.|+..+|.+++..+.+ .+...+-...++..+|.|.||.+||+||.+++.. .
T Consensus 11 er~~r~~~lf~~lD~~~~-g~~d~~~l~k~~~~l~~----~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~ 85 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKND-GQVDLDQLEKGLEKLDH----PKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELY 85 (463)
T ss_pred HHHHHHHHHHHHhccCCC-CceeHHHHHHHHHhcCC----CCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHH
Confidence 455678999999999999 99999999999999982 2366677899999999999999999999998855 3
Q ss_pred CccccccccCCcccccccccccccccCeeeeccc
Q 013328 374 TWSDQRNDLNDEDEDGFVKSSLEQTIGFSVKNAV 407 (445)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 407 (445)
.+|...|.+.+|.++-.|...++.++|.+++...
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~ 119 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEK 119 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCHHH
Confidence 4568889999999999999999999998877655
No 49
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.67 E-value=3.7e-08 Score=75.81 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=57.5
Q ss_pred hhccchHHHhccccccC--CCCCcccHHHHHHHHH-HhccCCCCCCCC----HHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 298 RRASLTETDAFAFLKAD--NDGDYITYSGFCEALE-QLNLTGHKHGLA----DEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~--~~~G~i~~~el~~~l~-~~g~~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
.+....+...|+.++.. .+ |+|+.+||+.+|. .+| ..++ +++++.+|+.+|.|++|.|+|+||+..+
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~-~~Is~~El~~ll~~~~g-----~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHP-DTLYKKEFKQLVEKELP-----NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCc-ccCCHHHHHHHHHHHhh-----HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 34566788899999865 36 9999999999997 555 4465 8999999999999999999999999766
Q ss_pred hc
Q 013328 371 WK 372 (445)
Q Consensus 371 ~~ 372 (445)
..
T Consensus 78 ~~ 79 (88)
T cd05030 78 IK 79 (88)
T ss_pred HH
Confidence 43
No 50
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.64 E-value=1e-07 Score=83.33 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=63.8
Q ss_pred HHHHHHHHHhh-h-hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCC--HH----HHHHHHHHhcCCCC
Q 013328 287 EAVFGMFKCLL-R-RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLA--DE----ETKDLWVQADIDGN 358 (445)
Q Consensus 287 ~~v~~~~~~~~-~-~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~--~~----~~~~~~~~~d~~~~ 358 (445)
+.|+..+.... . .....++=+|+.||.+++ |+|+.+||+.++..+- + ...+ ++ -++++|.++|.|+|
T Consensus 87 ~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~-G~I~reel~~iv~~~~--~--~~~~~~~e~~~~i~d~t~~e~D~d~D 161 (187)
T KOG0034|consen 87 EEFVRLLSVFSPKASKREKLRFAFRVYDLDGD-GFISREELKQILRMMV--G--ENDDMSDEQLEDIVDKTFEEADTDGD 161 (187)
T ss_pred HHHHHHHhhhcCCccHHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHH--c--cCCcchHHHHHHHHHHHHHHhCCCCC
Confidence 56666666555 2 223478889999999999 9999999999999873 1 2233 33 35788999999999
Q ss_pred ceeeHHHHHHHHhcc
Q 013328 359 GVVDYKEFQQRIWKT 373 (445)
Q Consensus 359 g~i~~~eF~~~~~~~ 373 (445)
|.|+|+||.+.++..
T Consensus 162 G~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 162 GKISFEEFCKVVEKQ 176 (187)
T ss_pred CcCcHHHHHHHHHcC
Confidence 999999999888764
No 51
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.63 E-value=6.4e-08 Score=79.26 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=75.9
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhccC---
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTT--- 374 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~--- 374 (445)
+.++.+++++|..+|.|+| |.|+.++|+..+..+| ...++++++.||.+. .|-|+|.-|+.++-.+.
T Consensus 28 q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-----k~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-----KIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCC
Confidence 6889999999999999999 9999999999999999 889999999999885 78999999997664322
Q ss_pred --------ccccccccCCcccccccccccccccC
Q 013328 375 --------WSDQRNDLNDEDEDGFVKSSLEQTIG 400 (445)
Q Consensus 375 --------~~~~~~~~~~~~~~~~~~~~~~~~~g 400 (445)
.+.-.|.+..|.+++.....-+.+.|
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc
Confidence 23455666677777666555555555
No 52
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.62 E-value=5.7e-08 Score=84.63 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=68.2
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc----cCc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK----TTW 375 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~----~~~ 375 (445)
.....+++|+.+|.|++ |+|+..||+.+|..+| ..++++-++.|++.+|..++|.|.|++|++.+.. ...
T Consensus 122 ~i~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~G-----y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~ 195 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRS-GTIDSSELRQALTQLG-----YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEA 195 (221)
T ss_pred HHHHHHHHHHhcccCCC-CcccHHHHHHHHHHcC-----cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHH
Confidence 34567889999999999 9999999999999999 8899999999999999988999999999976632 334
Q ss_pred cccccccCCccc
Q 013328 376 SDQRNDLNDEDE 387 (445)
Q Consensus 376 ~~~~~~~~~~~~ 387 (445)
+.++|....|.+
T Consensus 196 Fr~~D~~q~G~i 207 (221)
T KOG0037|consen 196 FRRRDTAQQGSI 207 (221)
T ss_pred HHHhccccceeE
Confidence 455555555443
No 53
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.62 E-value=2.9e-07 Score=88.23 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=87.2
Q ss_pred ceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhc-------CCCcE--EEEeecc-cC-----------h
Q 013328 29 CITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLY-------ERSSI--ICLQEFW-VG-----------N 87 (445)
Q Consensus 29 ~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~-------~~~DI--I~LQEv~-~~-----------~ 87 (445)
.+-|+||||.+.. .. + ...+.++|.. ..||| |+|||+. .. .
T Consensus 4 ~v~v~TwNv~~~~-~~--------p---------~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~ 65 (310)
T smart00128 4 KVLVGTWNVGGLK-AD--------P---------KVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKE 65 (310)
T ss_pred EEEEEEEECCCcc-CC--------C---------hhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhH
Confidence 5789999998642 00 0 0344555544 67999 7799982 10 1
Q ss_pred hhHHHHHHHHhhc-cCccEEEecCCCCCCceEEEEEecCcceEEeeEEEEecCCCCceeeeecccccccccccccCCCCc
Q 013328 88 EELVDMYEKRLSD-AGYVNFKLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFGDRVAQLLHVELIDPFSQCRNGDLRQ 166 (445)
Q Consensus 88 ~~~~~~l~~~l~~-~gy~~~~~~~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (445)
..+...+...|.. ..|..+.. ..-.+-++.||.+.+..+-+..........+ .+... . .......+....+.
T Consensus 66 ~~W~~~i~~~l~~~~~Y~~v~~--~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G--~~~~~--~-nKG~v~i~~~~~~~ 138 (310)
T smart00128 66 RLWSKLIESSLNGDGQYNVLAK--VRLVGILVLVFVKANHLVYIKDVETFTVKTG--MGGLW--G-NKGAVAVRFKLSDT 138 (310)
T ss_pred HHHHHHHHHhcCCCCceEEEee--eeecceEEEEEEehhhcCccceeEeeeeecc--cccee--e-cCceEEEEEEEcCc
Confidence 2234444455542 34554432 2334447788877663222211111000111 00000 0 00111133344678
Q ss_pred eEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHc--CCCCCcEEEeecCCCCcC
Q 013328 167 EILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEH--NLKPIPIILCGDWNGSKR 223 (445)
Q Consensus 167 ~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~--~~~~~pvIl~GDFN~~p~ 223 (445)
.++++|+||.+.. .....|..+...+++.+.--.... ......+|++||||---+
T Consensus 139 ~~~fv~~HL~a~~--~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 139 SFCFVNSHLAAGA--SNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred EEEEEeecccccc--chhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 9999999997743 345678888888866552100000 013467999999997543
No 54
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.59 E-value=3.1e-08 Score=79.66 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=74.2
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC--CCceeeHHHHHHHHhccCcc
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID--GNGVVDYKEFQQRIWKTTWS 376 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~eF~~~~~~~~~~ 376 (445)
....+++++|..||..+| |+|+......+|+.+| .++++.++.+.+.+++.+ +--.|+|++|+ .|+....
T Consensus 8 d~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRalG-----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fL-pm~q~va- 79 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGD-GKISGSQVGDVLRALG-----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFL-PMYQQVA- 79 (152)
T ss_pred chHHHHHHHHHHHhccCc-ccccHHHHHHHHHHhc-----CCCcHHHHHHHHcCcccchhhhhhhhHHHHH-HHHHHHH-
Confidence 455789999999999999 9999999999999999 999999999999999887 45789999999 4544332
Q ss_pred ccccccCCcccccccccccccccCe
Q 013328 377 DQRNDLNDEDEDGFVKSSLEQTIGF 401 (445)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~g~ 401 (445)
++.+....+++-++..+.|.+.-|+
T Consensus 80 knk~q~t~edfvegLrvFDkeg~G~ 104 (152)
T KOG0030|consen 80 KNKDQGTYEDFVEGLRVFDKEGNGT 104 (152)
T ss_pred hccccCcHHHHHHHHHhhcccCCcc
Confidence 2344444455555555666666554
No 55
>PTZ00183 centrin; Provisional
Probab=98.58 E-value=2.4e-07 Score=79.80 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=60.5
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
...+..+|+.+|.+++ |.|+..||..++..+| ..++.++++.++..+|.|++|.|+|+||++.+..
T Consensus 89 ~~~l~~~F~~~D~~~~-G~i~~~e~~~~l~~~~-----~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKT-GKISLKNLKRVAKELG-----ETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3568899999999999 9999999999999998 7799999999999999999999999999976644
No 56
>PTZ00184 calmodulin; Provisional
Probab=98.57 E-value=2.2e-07 Score=79.08 Aligned_cols=64 Identities=27% Similarity=0.551 Sum_probs=59.2
Q ss_pred chHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 302 LTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 302 ~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
..+..+|+.+|.+++ |.|+.+||+.+|..+| ..++.++++.++..+|.+++|.|+|+||+..+.
T Consensus 84 ~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGN-GFISAAELRHVMTNLG-----EKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCC-CeEeHHHHHHHHHHHC-----CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 567889999999999 9999999999999998 778999999999999999999999999997653
No 57
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.53 E-value=2.8e-07 Score=70.06 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=53.5
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHH-hc-cCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQ-LN-LTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~-~g-~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
......+..+|+.+- |++++++..||+.+|.. ++ +- ...-.++.++++|+.+|.|+||.|+|.||+..+
T Consensus 4 E~ai~~lI~~FhkYa--G~~~tLsk~Elk~Ll~~Elp~~l--~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 4 EHSMEKMMLTFHKFA--GEKNYLNRDDLQKLMEKEFSEFL--KNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHHHHHc--CCCCcCCHHHHHHHHHHHhHHHH--cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345567888999987 33379999999999965 21 00 033467889999999999999999999999655
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.23 E-value=1.8e-06 Score=51.02 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 345 ETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 345 ~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
|++++|+.+|.|+||.|+++||+..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 68899999999999999999999665
No 59
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.21 E-value=1.1e-06 Score=52.05 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.8
Q ss_pred hHHHhccccccCCCCCcccHHHHHHHHHHh
Q 013328 303 TETDAFAFLKADNDGDYITYSGFCEALEQL 332 (445)
Q Consensus 303 ~~~~~F~~~D~~~~~G~i~~~el~~~l~~~ 332 (445)
+++++|+.+|+|+| |+|+.+||+.+|+.|
T Consensus 1 E~~~~F~~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCC-CcCCHHHHHHHHHhC
Confidence 47889999999999 999999999999875
No 60
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.19 E-value=4.4e-06 Score=79.39 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=65.4
Q ss_pred HHhhhhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 294 KCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 294 ~~~~~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
...+.....++.+.|+.+|.+.| |.|+.+|+...|+.+| .+++++++++++..+|+++++.|+++||-..+.
T Consensus 74 ~~Y~~~~E~~l~~~F~~iD~~hd-G~i~~~Ei~~~l~~~g-----i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 74 KRYLDNKELELYRIFQSIDLEHD-GKIDPNEIWRYLKDLG-----IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHhHHHHHHHHhhhccccC-CccCHHHHHHHHHHhC-----CccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 34445777889999999999999 9999999999999999 889999999999999999999999999986653
No 61
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.14 E-value=1.1e-05 Score=65.50 Aligned_cols=82 Identities=27% Similarity=0.482 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhhhccc--hHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHH----HHHHHHhcCCCCce
Q 013328 287 EAVFGMFKCLLRRASL--TETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEET----KDLWVQADIDGNGV 360 (445)
Q Consensus 287 ~~v~~~~~~~~~~~~~--~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~----~~~~~~~d~~~~g~ 360 (445)
+.++.|+......... .+.=+|+.+|-|+| +.|-..+|...+..|-- ..++++|+ ++++.+.|.||||+
T Consensus 91 ddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr----~eLs~eEv~~i~ekvieEAD~DgDgk 165 (189)
T KOG0038|consen 91 DDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTR----DELSDEEVELICEKVIEEADLDGDGK 165 (189)
T ss_pred HHHHHHHHHHHhhChHHhhhhheeEEeecCCC-CcccHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 6677776655433333 34457999999999 99999999999998831 45778775 67888999999999
Q ss_pred eeHHHHHHHHhcc
Q 013328 361 VDYKEFQQRIWKT 373 (445)
Q Consensus 361 i~~~eF~~~~~~~ 373 (445)
++|.||-..+.+.
T Consensus 166 l~~~eFe~~i~ra 178 (189)
T KOG0038|consen 166 LSFAEFEHVILRA 178 (189)
T ss_pred ccHHHHHHHHHhC
Confidence 9999999877663
No 62
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.10 E-value=9.8e-06 Score=71.06 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=55.4
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHh-ccCCC-----CCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQL-NLTGH-----KHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
...+.+.-+|+.+|.|++ |+|+.+|+-.++..+ -+.+. ...-.++-++++|+.+|.|+||.|+++||++....
T Consensus 97 t~eekl~w~F~lyD~dgd-G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGD-GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHhhhhheeecCCCC-ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 444667778999999999 999999998888764 11111 01123455899999999999999999999976643
No 63
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=2.5e-06 Score=78.89 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=51.5
Q ss_pred HHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 305 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 305 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
++-|+.-|.|++ |.++.+||...|.--. -..+..--|..-|...|+|+||+|+++||+.-|+.
T Consensus 166 e~rFk~AD~d~d-g~lt~EEF~aFLHPEe----~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 166 EERFKAADQDGD-GSLTLEEFTAFLHPEE----HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHhhcccCCC-CcccHHHHHhccChhh----cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 456999999999 9999999999875322 13344556788899999999999999999988865
No 64
>PLN02964 phosphatidylserine decarboxylase
Probab=98.04 E-value=6.5e-06 Score=85.02 Aligned_cols=63 Identities=22% Similarity=0.452 Sum_probs=41.2
Q ss_pred HHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 304 ETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 304 ~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
+.++|+.+|.|++ |.|+.+||..+|..++ ...++++++.+|+.+|.|++|.|+++||.+.+..
T Consensus 181 i~~mf~~~D~Dgd-G~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDED-GQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCC-CeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 5666666666666 6677667766666666 4556666666666666666667777766654433
No 65
>PLN02964 phosphatidylserine decarboxylase
Probab=97.97 E-value=1.3e-05 Score=82.86 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=69.8
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHH---HHHHHHHhcCCCCceeeHHHHHHHH--hc
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEE---TKDLWVQADIDGNGVVDYKEFQQRI--WK 372 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~---~~~~~~~~d~~~~g~i~~~eF~~~~--~~ 372 (445)
..+..++.++|..+|+|++ |+| |+.+++.+|+ ..+++++ ++.++..+|.|++|.|+|+||+..| +.
T Consensus 139 ~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 139 TQEPESACESFDLLDPSSS-NKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 5667899999999999999 997 9999999993 2577776 8999999999999999999998655 22
Q ss_pred --------cCccccccccCCccccccccc
Q 013328 373 --------TTWSDQRNDLNDEDEDGFVKS 393 (445)
Q Consensus 373 --------~~~~~~~~~~~~~~~~~~~~~ 393 (445)
..++...|.+..|.+..+|..
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~ 238 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELA 238 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence 224455677777777766643
No 66
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.97 E-value=1.4e-05 Score=76.41 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=60.3
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
.....+..+|+.+|.|++ |.||.+||+.+.+-++- +-...++++++-++-+.+|-|+||.||++||+++.
T Consensus 544 r~ks~LetiF~~iD~D~S-G~isldEF~~a~~l~~s-h~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNS-GEISLDEFRTAWKLLSS-HMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred hchhhHHHHHHHhccCCC-CceeHHHHHHHHHHHHh-hcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 445678889999999999 99999999999887751 11366889999999999999999999999999765
No 67
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.96 E-value=6.4e-06 Score=49.79 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=26.6
Q ss_pred hHHHhccccccCCCCCcccHHHHHHHHH-Hhc
Q 013328 303 TETDAFAFLKADNDGDYITYSGFCEALE-QLN 333 (445)
Q Consensus 303 ~~~~~F~~~D~~~~~G~i~~~el~~~l~-~~g 333 (445)
+++++|+.+|.|++ |+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~d-G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGD-GFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSS-SEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCC-CcCcHHHHHHHHHHhcC
Confidence 47889999999999 9999999999999 676
No 68
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.88 E-value=3.2e-05 Score=67.87 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=61.0
Q ss_pred HHHHHHHhh--hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHH
Q 013328 289 VFGMFKCLL--RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEF 366 (445)
Q Consensus 289 v~~~~~~~~--~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 366 (445)
+-.++...+ .....-...+|+.||.|++ |.|+..||-.+|..+- ..-.++.++-.++.+|.|+||.|+++|+
T Consensus 49 F~~i~~~~fp~gd~~~y~~~vF~~fD~~~d-g~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Em 122 (193)
T KOG0044|consen 49 FREIYASFFPDGDASKYAELVFRTFDKNKD-GTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEM 122 (193)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhcccCC-CCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHH
Confidence 444445444 4555677889999999999 9999999888887764 3456777888899999999999999999
Q ss_pred HHHH
Q 013328 367 QQRI 370 (445)
Q Consensus 367 ~~~~ 370 (445)
+..+
T Consensus 123 l~iv 126 (193)
T KOG0044|consen 123 LKIV 126 (193)
T ss_pred HHHH
Confidence 8655
No 69
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.84 E-value=6.1e-05 Score=59.46 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=55.2
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.....+..+|..+|. ++ |.|+.++.+.+|..-| ++.+.+.+|..-.|.|+||.++++||+-+|+
T Consensus 7 ~e~~~y~~~F~~l~~-~~-g~isg~~a~~~f~~S~-------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QD-GKISGDQAREFFMKSG-------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-ST-TEEEHHHHHHHHHHTT-------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 345677889999984 68 9999999999999977 8899999999999999999999999986553
No 70
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.83 E-value=6.9e-05 Score=49.93 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 319 YITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 319 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
+++..|++.+|+.++ ..+++.-+..+|+++|++++|.++.+||++..
T Consensus 1 kmsf~Evk~lLk~~N-----I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-----IEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp EBEHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-----cCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 478999999999999 77999999999999999999999999998643
No 71
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00011 Score=76.75 Aligned_cols=166 Identities=17% Similarity=0.062 Sum_probs=87.7
Q ss_pred ceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHHHhcC-------CCcE--EEEeecc-----------cC-h
Q 013328 29 CITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDWLLYE-------RSSI--ICLQEFW-----------VG-N 87 (445)
Q Consensus 29 ~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~-------~~DI--I~LQEv~-----------~~-~ 87 (445)
.+=|.||||.+-.. . .+.-|.+||... -||| |+||||- .. .
T Consensus 538 ~IfvgTfNvNG~s~----------~--------~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~tk~ 599 (1080)
T KOG0566|consen 538 SIFVGTFNVNGRSA----------A--------FKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSASTTKR 599 (1080)
T ss_pred EEEEEeeeccCccc----------c--------chhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccChHHH
Confidence 46678999985210 0 113455555433 3776 6789992 01 1
Q ss_pred hhHHHHHHHHhhccCccEEEecCCCCCCceEEEEEecCcceEEeeEEEEecCCC--CceeeeecccccccccccccCCCC
Q 013328 88 EELVDMYEKRLSDAGYVNFKLARTNNRGDGLLTAVHKDYFRVVNYRDLLFNDFG--DRVAQLLHVELIDPFSQCRNGDLR 165 (445)
Q Consensus 88 ~~~~~~l~~~l~~~gy~~~~~~~~~~~~~G~ai~~~s~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g 165 (445)
.-|.+.+...|..+.-.|+......=.+--+.+|.|..+.|.+.........++ +..+. ......+.....
T Consensus 600 ~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgN-------KGAVAIrf~~~~ 672 (1080)
T KOG0566|consen 600 RFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGN-------KGAVAIRFVYHA 672 (1080)
T ss_pred HHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceeecccccccCC-------CceEEEEEEecc
Confidence 236666777777544334433222222234456667776666654444333322 11000 000012333457
Q ss_pred ceEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCC
Q 013328 166 QEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGS 221 (445)
Q Consensus 166 ~~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 221 (445)
..|+++|.||.+.. .....|......+.+.|.=-.-..-....-|+.|||||--
T Consensus 673 TsfCFv~SHlAAG~--snv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 673 TSFCFVCSHLAAGQ--SNVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred ccEEEEeccccccc--chHhhhhhhHHHHHHhccccCCccccCCceEEEeccccee
Confidence 78999999997743 4455676666666665532111111244569999999964
No 72
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.82 E-value=3.7e-05 Score=62.64 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=40.8
Q ss_pred EEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCc------------chhHhhhhCCC
Q 013328 168 ILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRG------------HVYKFLRSQGF 235 (445)
Q Consensus 168 v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s------------~~~~~l~~~g~ 235 (445)
+.|+|+ |.|+.. ....+.+.+.++.+.. ...++||+||||..... ...+.+.+.++
T Consensus 1 i~i~~v--Y~pp~~--------~~~~~~~~l~~~~~~~--~~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 1 ITIISV--YAPPSS--------EREEFFDQLRQLLKNL--PPAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEEE--E--TTS---------CHHHHHHHHHHHHCC--TTSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred CEEEEE--ECCCCc--------cHHHHHHHHHHHHHhC--CCCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 567888 777743 2333444444444432 22289999999995321 12234444455
Q ss_pred cccccccccCCCCCCCcceeccCCCCcccccceeeecCCcccc
Q 013328 236 VSSYDTAHQYTDADAHKWVSHRNHRGNICGVDFIWLLNPNKYR 278 (445)
Q Consensus 236 ~d~~~~~~~~~~~~~~t~~~~~~~~~~~~rIDyi~~~~~~~~~ 278 (445)
.+. +. ....+||..... ..+||++|++......
T Consensus 69 ~~~----~~--~~~~~T~~~~~~----~s~iD~~~~s~~~~~~ 101 (119)
T PF14529_consen 69 VDL----NP--PGRPPTFISNSH----GSRIDLILTSDNLLSW 101 (119)
T ss_dssp EE---------TT---SEEECCC----EE--EEEEEECCGCCC
T ss_pred eee----ec--CCCCCcccCCCC----CceEEEEEECChHHhc
Confidence 533 11 112366655442 5789999998776543
No 73
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.60 E-value=0.00011 Score=41.74 Aligned_cols=24 Identities=42% Similarity=0.735 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHH
Q 013328 346 TKDLWVQADIDGNGVVDYKEFQQR 369 (445)
Q Consensus 346 ~~~~~~~~d~~~~g~i~~~eF~~~ 369 (445)
++++|+.+|.|+||.|+++||.+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467899999999999999999864
No 74
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.57 E-value=5e-05 Score=43.19 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.5
Q ss_pred HHHhccccccCCCCCcccHHHHHHHH
Q 013328 304 ETDAFAFLKADNDGDYITYSGFCEAL 329 (445)
Q Consensus 304 ~~~~F~~~D~~~~~G~i~~~el~~~l 329 (445)
|+++|+.+|.|+| |.|+.+||+.++
T Consensus 1 l~~~F~~~D~d~D-G~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGD-GKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSS-SEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCC-CcCCHHHHHHHC
Confidence 5678999999999 999999999864
No 75
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.45 E-value=0.0002 Score=70.34 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=46.1
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
.....+..+|+.+|.|++ |.|+.+||. + ++.+|..+|.|+||.|+++||.+.+
T Consensus 331 ~~~~~l~~aF~~~D~dgd-G~Is~~E~~------~------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGD-GFITREEWL------G------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hhhHHHHHHHHHhCCCCC-CcCcHHHHH------H------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 344678899999999999 999999993 2 4679999999999999999999755
No 76
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00021 Score=66.36 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=59.9
Q ss_pred HHHHHhh-hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHH
Q 013328 291 GMFKCLL-RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQR 369 (445)
Q Consensus 291 ~~~~~~~-~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 369 (445)
..+..+. .+....+..+|..+|.+++ |.|+..||+.-+...- ......++.+-+...|.|.||.|+|+|+...
T Consensus 65 ~~fd~l~~ee~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~-----k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~ 138 (325)
T KOG4223|consen 65 DEFDQLTPEESQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQ-----KKYVVEEAARRWDEYDKNKDGFITWEEYLPQ 138 (325)
T ss_pred hhhhhhCcchhHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCccceeeHHHhhhh
Confidence 4444444 5677889999999999999 9999999998776543 2333556777888899999999999999977
Q ss_pred Hhc
Q 013328 370 IWK 372 (445)
Q Consensus 370 ~~~ 372 (445)
++.
T Consensus 139 ~~~ 141 (325)
T KOG4223|consen 139 TYG 141 (325)
T ss_pred hhh
Confidence 764
No 77
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.34 E-value=0.00011 Score=59.08 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=46.7
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHH
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQ 368 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 368 (445)
......+.-.|..+|.|+| |.|+..||+.+...+. ..+.-++.+++..|.|+||.|++.|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d-~~L~~~El~~l~~~l~-------~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKD-GVLDRSELKPLRRPLM-------PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-S-SEE-TTTTGGGGSTTS-------TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCC-CccCHHHHHHHHHHHh-------hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4455667777999999999 9999999998765443 5566789999999999999999999963
No 78
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.29 E-value=0.00044 Score=67.93 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=59.3
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
+....++.+.|..+| |++ |+|+..||..++.+.++.. .....+++++++...+.|.+|.|+|+||+..++.
T Consensus 15 q~El~~l~~kF~~~d-~~~-G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQK-GYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHHhhc-CCC-CeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 344567889999999 999 9999999999999987321 2245789999999999999999999999975544
No 79
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.00079 Score=52.55 Aligned_cols=62 Identities=24% Similarity=0.485 Sum_probs=46.2
Q ss_pred hccccccCCCCCcccHHHHHHHHHHhcc---CCC-CCC-CCHHHHHH----HHHHhcCCCCceeeHHHHHHH
Q 013328 307 AFAFLKADNDGDYITYSGFCEALEQLNL---TGH-KHG-LADEETKD----LWVQADIDGNGVVDYKEFQQR 369 (445)
Q Consensus 307 ~F~~~D~~~~~G~i~~~el~~~l~~~g~---~~~-~~~-~~~~~~~~----~~~~~d~~~~g~i~~~eF~~~ 369 (445)
.|++.|.|++ |.|+-=||..++.-.-- .|+ +.+ +++.|++. +++.-|.|+||.|||.||++.
T Consensus 72 YF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5888999999 99999999999875421 122 434 45556554 455678999999999999863
No 80
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.04 E-value=0.0011 Score=39.89 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 345 ETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 345 ~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
+++.+|..+|.|+||.|+++||...+-
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999986553
No 81
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.94 E-value=0.0013 Score=71.67 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=60.1
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCC--C-----HHHHHHHHHHhcCCCCceeeHHHHHHHHhcc
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGL--A-----DEETKDLWVQADIDGNGVVDYKEFQQRIWKT 373 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~--~-----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 373 (445)
-.++.-+|+.||++.+ |.++..+|+.+|+.+| .++ - +.+.+.+|...|++.+|.|+..+|+++|...
T Consensus 2252 L~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslg-----Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLG-----YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHhchhhc-cCCcHHHHHHHHHhcC-----CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 3467778999999999 9999999999999999 443 2 3479999999999999999999999999775
Q ss_pred Cc
Q 013328 374 TW 375 (445)
Q Consensus 374 ~~ 375 (445)
..
T Consensus 2326 ET 2327 (2399)
T KOG0040|consen 2326 ET 2327 (2399)
T ss_pred cc
Confidence 54
No 82
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=96.46 E-value=0.009 Score=57.29 Aligned_cols=68 Identities=25% Similarity=0.479 Sum_probs=45.3
Q ss_pred CcEEEeecCCCCcCcc-------------------------hh-HhhhhCC-CcccccccccCCCCCCCcceeccC--CC
Q 013328 210 IPIILCGDWNGSKRGH-------------------------VY-KFLRSQG-FVSSYDTAHQYTDADAHKWVSHRN--HR 260 (445)
Q Consensus 210 ~pvIl~GDFN~~p~s~-------------------------~~-~~l~~~g-~~d~~~~~~~~~~~~~~t~~~~~~--~~ 260 (445)
.|++.|||.|..+... .+ ..+.+.| ++|+|+..+.........|..-.+ ..
T Consensus 213 ~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~~~t~Wk~~~~~r~~ 292 (335)
T KOG1294|consen 213 APVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYMPNGRQR 292 (335)
T ss_pred CcceeccccccchhhccccccccccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCccccccchhhccccccC
Confidence 5899999999865321 12 2334556 889999887765545666755432 33
Q ss_pred CcccccceeeecCCccc
Q 013328 261 GNICGVDFIWLLNPNKY 277 (445)
Q Consensus 261 ~~~~rIDyi~~~~~~~~ 277 (445)
+...|+||+.++.+...
T Consensus 293 ~~~~r~dy~~Vsk~~~n 309 (335)
T KOG1294|consen 293 GHGERCDYILVSKPGPN 309 (335)
T ss_pred CCCCceeEEEecCcCCC
Confidence 45679999999877643
No 83
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.45 E-value=0.0056 Score=66.03 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHhhhhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeH
Q 013328 284 SWSEAVFGMFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDY 363 (445)
Q Consensus 284 s~~~~v~~~~~~~~~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 363 (445)
+.++.++..++++++-+...-...|+.+|.||. |.|+..+|+++|.... ..+..|++-++.....|.+..++|
T Consensus 4039 ~nvemilkffdmflklkdltssdtfkeydpdgk-giiskkdf~kame~~k------~ytqse~dfllscae~dend~~~y 4111 (5019)
T KOG2243|consen 4039 NNVEMILKFFDMFLKLKDLTSSDTFKEYDPDGK-GIISKKDFHKAMEGHK------HYTQSEIDFLLSCAEADENDMFDY 4111 (5019)
T ss_pred ccHHHHHHHHHHHHHHhhccccccchhcCCCCC-ccccHHHHHHHHhccc------cchhHHHHHHHHhhccCccccccH
Confidence 356778888888776666667778999999999 9999999999998643 478889999999999999999999
Q ss_pred HHHHHHHhc
Q 013328 364 KEFQQRIWK 372 (445)
Q Consensus 364 ~eF~~~~~~ 372 (445)
++|+..+..
T Consensus 4112 ~dfv~rfhe 4120 (5019)
T KOG2243|consen 4112 EDFVDRFHE 4120 (5019)
T ss_pred HHHHHHhcC
Confidence 999987754
No 84
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.98 E-value=0.005 Score=54.80 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=49.3
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHH-HhccCCCCCCC--CHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALE-QLNLTGHKHGL--ADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~-~~g~~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
....+..+|+..|.|.| |+|+..|+++-+. +.. ..+ ..++-+-.|+..|.|+||.|+++||.-.+
T Consensus 99 srrklmviFsKvDVNtD-rkisAkEmqrwImekta-----EHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTA-----EHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHhhcccCcc-ccccHHHHHHHHHHHHH-----HHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 34567889999999999 9999999987554 332 222 22345667888999999999999996433
No 85
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.0059 Score=59.05 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=48.5
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHH------hccCCCCCCCCHH-----HHHH--HHHHhcCCCCceeeHH
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQ------LNLTGHKHGLADE-----ETKD--LWVQADIDGNGVVDYK 364 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~------~g~~~~~~~~~~~-----~~~~--~~~~~d~~~~g~i~~~ 364 (445)
.......+-+|++||.||+ |.|+.+||..+..- +|.. |...++.. ++.. +..-|..+++++++++
T Consensus 229 S~p~~~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~~-hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~d 306 (489)
T KOG2643|consen 229 SIPERNFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGVR-HRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSID 306 (489)
T ss_pred ccCcccceeeeeeeecCCC-CcccHHHHHHHHHHHHhcccccee-cccCccccceehhhhhhhHHHHhhccCCCccccHH
Confidence 4555667889999999999 99999999887742 2211 11111111 2222 3445789999999999
Q ss_pred HHHHHH
Q 013328 365 EFQQRI 370 (445)
Q Consensus 365 eF~~~~ 370 (445)
||++.+
T Consensus 307 eF~~F~ 312 (489)
T KOG2643|consen 307 EFLKFQ 312 (489)
T ss_pred HHHHHH
Confidence 998766
No 86
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.96 E-value=0.013 Score=51.58 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=43.3
Q ss_pred hhccchHHHhccccccC-CCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCce-eeHHHHHHHH
Q 013328 298 RRASLTETDAFAFLKAD-NDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGV-VDYKEFQQRI 370 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~-~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~eF~~~~ 370 (445)
......|...|+.+|.+ ++ |.|+.+||..+... . . ..-.+.++..++.+++|. |+|++|++.+
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~-g~lt~eef~~i~~~-~-----~---Np~~~rI~~~f~~~~~~~~v~F~~Fv~~l 93 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGD-GYLTKEEFLSIPEL-A-----L---NPLADRIIDRFDTDGNGDPVDFEEFVRLL 93 (187)
T ss_pred HHHHHHHHHHHHHhcccccc-CccCHHHHHHHHHH-h-----c---CcHHHHHHHHHhccCCCCccCHHHHHHHH
Confidence 34556677778888887 66 88888888877732 2 1 123467777777777777 8888888655
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.81 E-value=0.008 Score=34.37 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=25.0
Q ss_pred hHHHhccccccCCCCCcccHHHHHHHHHH
Q 013328 303 TETDAFAFLKADNDGDYITYSGFCEALEQ 331 (445)
Q Consensus 303 ~~~~~F~~~D~~~~~G~i~~~el~~~l~~ 331 (445)
+++++|+.+|.+++ |.|+..||..+++.
T Consensus 1 ~~~~~f~~~d~~~~-g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGD-GKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCC-CcEeHHHHHHHHHh
Confidence 36789999999999 99999999999875
No 88
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.74 E-value=0.013 Score=33.47 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 345 ETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 345 ~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
+++.+++.+|.+++|.|+++||...+
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 36789999999999999999998654
No 89
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.35 E-value=0.036 Score=41.85 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=52.9
Q ss_pred hHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC----CCceeeHHHHHHHHhccC
Q 013328 303 TETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID----GNGVVDYKEFQQRIWKTT 374 (445)
Q Consensus 303 ~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~~ 374 (445)
++..+|+.+-. +. +.|+.++|+..|+.-. ++ ...+.++++.+|..+..+ ..+.+++++|..+|..+.
T Consensus 1 ei~~if~~ys~-~~-~~mt~~~f~~FL~~eQ--~~-~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DK-EYMTAEEFRRFLREEQ--GE-PRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TS-SSEEHHHHHHHHHHTS--S--TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CC-CcCCHHHHHHHHHHHh--cc-ccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46788998854 66 8999999999998763 01 235899999999998655 479999999999887643
No 90
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.20 E-value=0.033 Score=38.08 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=28.4
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHH
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQ 331 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~ 331 (445)
-...++..+|..+|.|++ |.|+.+||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSS-SSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCC-CCCCHHHHHHHHHh
Confidence 445679999999999999 99999999998864
No 91
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=94.29 E-value=0.071 Score=49.27 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=39.6
Q ss_pred ccCCCCceEEEEEeeeeCCCC---------CCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcc
Q 013328 160 RNGDLRQEILIVNTHLLFPHD---------SSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGH 225 (445)
Q Consensus 160 ~~~~~g~~v~v~n~HL~~~~~---------~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~ 225 (445)
+....+..|.++|+||..... ..+...|..-...++..+..... ...|+++.||||.--+..
T Consensus 74 rw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~----~~~~lF~fGDfNyRld~~ 144 (356)
T PTZ00312 74 SLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFIS----PSDPLFIFGDFNVRLDGH 144 (356)
T ss_pred EEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccC----CCCcEEEeccceeeeccc
Confidence 344567889999999966321 12344555555555554444332 567899999999865543
No 92
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=94.01 E-value=0.19 Score=51.50 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=37.7
Q ss_pred cCCCCceEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHH--HHHH----cCCCCCcEEEeecCCCC
Q 013328 161 NGDLRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVES--YQKE----HNLKPIPIILCGDWNGS 221 (445)
Q Consensus 161 ~~~~g~~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~--~~~~----~~~~~~pvIl~GDFN~~ 221 (445)
+...+..|+++|+||.++........|..+...++..+.= .... .-....-+|++||||--
T Consensus 415 ~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 415 MSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred EEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccc
Confidence 3445789999999998865433445677777777654310 0000 00123469999999964
No 93
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=93.74 E-value=0.32 Score=47.43 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=55.5
Q ss_pred HHHHHHhhhhccchHHHhccccccCCCCCcccHHHHHHHHHHh-ccCCCCC--------CCC------------------
Q 013328 290 FGMFKCLLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQL-NLTGHKH--------GLA------------------ 342 (445)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~~~~~--------~~~------------------ 342 (445)
+..+...+.....++...|+.+|.+++ |+|+...-..++..+ ||. .+. +.+
T Consensus 452 lk~Lrerl~s~~sdL~~eF~~~D~~ks-G~lsis~Wa~~mE~i~~L~-LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~ 529 (631)
T KOG0377|consen 452 LKELRERLRSHRSDLEDEFRKYDPKKS-GKLSISHWAKCMENITGLN-LPWRLLRPKLANGSDDGKVEYKSTLDNLDTEV 529 (631)
T ss_pred HHHHHHHHHhhhhHHHHHHHhcChhhc-CeeeHHHHHHHHHHHhcCC-CcHHHhhhhccCCCcCcceehHhHHHHhhhhh
Confidence 334444445667789999999999999 999999998888763 321 000 000
Q ss_pred -H---------------HHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 343 -D---------------EETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 343 -~---------------~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
. ..++.+|..+|.|++|.|+.+||.. +|.
T Consensus 530 ~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~-a~~ 574 (631)
T KOG0377|consen 530 ILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRT-AWK 574 (631)
T ss_pred HHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHH-HHH
Confidence 0 1135678889999999999999984 443
No 94
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.64 E-value=0.1 Score=37.17 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 346 TKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 346 ~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
++++|+.+|.|++|.|+.+||...+..
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~ 28 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKH 28 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 678999999999999999999976644
No 95
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=92.77 E-value=0.14 Score=47.46 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=46.4
Q ss_pred ccccCCCCceEEEEEeeeeC--------CC-CCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcc
Q 013328 158 QCRNGDLRQEILIVNTHLLF--------PH-DSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGH 225 (445)
Q Consensus 158 ~~~~~~~g~~v~v~n~HL~~--------~~-~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~ 225 (445)
..+..+.|..+.++|.||.- .. ...+...|..++..+++.|..-. .....++|.||||..-++.
T Consensus 161 ~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~----~~~~~~fVfGdfNfrLds~ 233 (391)
T KOG1976|consen 161 LARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEG----LRNDAIFVFGDFNFRLDST 233 (391)
T ss_pred ceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhc----cCceEEEEecccccccchH
Confidence 45666789999999999932 11 12456788899999888876532 1445789999999987764
No 96
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.59 E-value=0.028 Score=40.54 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=39.2
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-------CCceeeHHHHHHHH
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID-------GNGVVDYKEFQQRI 370 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~eF~~~~ 370 (445)
.+.+.++|+.+ .++. ++|+..||+..|. +++++-++..+..- ..|.+||..|++.+
T Consensus 5 ~eqv~~aFr~l-A~~K-pyVT~~dLr~~l~------------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGK-PYVTEEDLRRSLT------------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSS-SCEEHHHHHHHS-------------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCC-CcccHHHHHHHcC------------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 46788999999 6777 9999999998843 22345555555432 23789999998543
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.38 E-value=0.15 Score=52.86 Aligned_cols=65 Identities=23% Similarity=0.403 Sum_probs=57.1
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.....++.+|..+|+..+ |++|-..-+.+|..-| ++...+-.|..-.|.|+||+++-+||+-.|+
T Consensus 192 ~~klKY~QlFNa~Dktrs-G~Lsg~qaR~aL~qS~-------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRS-GYLSGQQARSALGQSG-------LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhhHHHHHhhhcccccc-cccccHHHHHHHHhcC-------CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 344678899999999999 9999999999998867 7788889999999999999999999985554
No 98
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=91.97 E-value=0.44 Score=46.73 Aligned_cols=56 Identities=20% Similarity=0.090 Sum_probs=35.8
Q ss_pred CCceEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCC
Q 013328 164 LRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGS 221 (445)
Q Consensus 164 ~g~~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 221 (445)
....++++|.||.+.. ...++|......+...|.--....-.....++++||||.-
T Consensus 163 ~~t~~cFv~shlaag~--~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 163 ERTSFCFVNSHLAAGV--NNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred ecCCcEEEecchhccc--ccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 4567999999997743 4566788777777665532100000123449999999953
No 99
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.89 E-value=0.91 Score=38.72 Aligned_cols=63 Identities=10% Similarity=0.275 Sum_probs=45.5
Q ss_pred HHhcccc---ccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 305 TDAFAFL---KADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 305 ~~~F~~~---D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
+++|..| -..+. ..++..-|..+|+..||.+ ..++..+++-+|..+-..+...|+|++|+..|
T Consensus 2 ~~~F~~f~~fG~~~~-~~m~~~~F~Kl~kD~~i~d--~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 2 EAVFKAFASFGKKNG-TEMDSKNFAKLCKDCGIID--KKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp HHHHHHHHCSSTSTS-SEEEHHHHHHHHHHTSS----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCCcc-ccccHHHHHHHHHHcCCCC--CCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 3445444 34444 6899999999999987642 23888999999999877777889999998766
No 100
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.32 E-value=0.43 Score=44.32 Aligned_cols=64 Identities=14% Similarity=0.273 Sum_probs=45.7
Q ss_pred HHHhccccccCCCCCcccHHHHHHHHHH-h-ccCCCCCCCCHHHH-----------HHHHHHhcCCCCceeeHHHHHHHH
Q 013328 304 ETDAFAFLKADNDGDYITYSGFCEALEQ-L-NLTGHKHGLADEET-----------KDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 304 ~~~~F~~~D~~~~~G~i~~~el~~~l~~-~-g~~~~~~~~~~~~~-----------~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
-.-.|...|.|+| |.++-.||..++.. | ..++ ....++++ +.+|+.+|.|.|..|+.+||+..-
T Consensus 246 PKTFF~LHD~NsD-GfldeqELEaLFtkELEKvYd--pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 246 PKTFFALHDLNSD-GFLDEQELEALFTKELEKVYD--PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cchheeeeccCCc-ccccHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 3457899999999 99999999888764 1 1100 11112221 467889999999999999999544
No 101
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=90.23 E-value=0.43 Score=36.51 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=28.2
Q ss_pred chHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 302 LTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 302 ~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
.++.++++.+|.|+| |.|+.+||..++..+.
T Consensus 47 ~~v~~mi~~~D~d~D-G~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQD-SKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCC-CCCcHHHHHHHHHHHH
Confidence 679999999999999 9999999999887764
No 102
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.17 E-value=0.4 Score=48.44 Aligned_cols=64 Identities=30% Similarity=0.440 Sum_probs=57.0
Q ss_pred chHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 302 LTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 302 ~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
...+.-|..+|.|+. |+++.+++..+|+..+ .+.+++.+.+++++.|.+-+|.+...||.+.+.
T Consensus 593 ~~~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~-----~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKK-AYQAIADVLKVLKSEN-----VGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHhhcchHH-HHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 344567999999999 9999999999999988 778999999999999999999999999986653
No 103
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.99 E-value=0.4 Score=44.95 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=66.9
Q ss_pred cceeeecCCcccccccccchhHHHHHHHHHhh-h-----------hcc-c-hHHHhccccccCCCCCcccHHHH---HHH
Q 013328 266 VDFIWLLNPNKYRKLLKASWSEAVFGMFKCLL-R-----------RAS-L-TETDAFAFLKADNDGDYITYSGF---CEA 328 (445)
Q Consensus 266 IDyi~~~~~~~~~~~~~~s~~~~v~~~~~~~~-~-----------~~~-~-~~~~~F~~~D~~~~~G~i~~~el---~~~ 328 (445)
.|-.=++.-....++.++.+...++..+...| . +.. + .+.-.|..+|+|.+ +.|...|. +.+
T Consensus 283 ~dp~kvR~l~gC~e~KKteFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~n-n~i~rrEwKpFK~~ 361 (421)
T KOG4578|consen 283 VDPKKVRRLNGCPEKKKTEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSN-NDIERREWKPFKRV 361 (421)
T ss_pred cccccccccCCCCcchhhHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeeeeccccc-CccchhhcchHHHH
Confidence 44444555555566666666666666665554 0 011 1 34446999999999 99999995 555
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 329 LEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 329 l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
|..-. -...-.+++++..|.|+|-+|+++|+...|
T Consensus 362 l~k~s-------~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 362 LLKKS-------KPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred HHhhc-------cHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 55432 335567899999999999999999998655
No 104
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=89.90 E-value=1 Score=44.53 Aligned_cols=66 Identities=11% Similarity=0.192 Sum_probs=50.1
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHH-------hccCCCCCCCC-HHHHHHHHHHhcCCCCceeeHHHHHH
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQ-------LNLTGHKHGLA-DEETKDLWVQADIDGNGVVDYKEFQQ 368 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~-------~g~~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~eF~~ 368 (445)
+.....++=+|+.+|.+++ |.|+..||+..... +| ...++ ++-+.+|+..+.....++|+.++|+.
T Consensus 347 k~t~~SleYwFrclDld~~-G~Lt~~el~~fyeeq~~rm~~~~----~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 347 KDTPASLEYWFRCLDLDGD-GILTLNELRYFYEEQLQRMECMG----QEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCCccchhhheeeeeccCC-CcccHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 6666788889999999999 99999999766543 23 12222 44456777777777789999999974
No 105
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=89.54 E-value=0.18 Score=49.18 Aligned_cols=51 Identities=27% Similarity=0.506 Sum_probs=43.2
Q ss_pred ccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHH
Q 013328 310 FLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQ 368 (445)
Q Consensus 310 ~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 368 (445)
.+|.+.+ |-||..|..-++.-|. .++....-.|+.||.||||.||.+||..
T Consensus 207 F~~lg~~-GLIsfSdYiFLlTlLS-------~p~~~F~IAFKMFD~dgnG~IdkeEF~~ 257 (489)
T KOG2643|consen 207 FYKLGES-GLISFSDYIFLLTLLS-------IPERNFRIAFKMFDLDGNGEIDKEEFET 257 (489)
T ss_pred EEEcCCC-CeeeHHHHHHHHHHHc-------cCcccceeeeeeeecCCCCcccHHHHHH
Confidence 3466778 9999999999998877 5566677789999999999999999974
No 106
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=89.02 E-value=0.39 Score=44.99 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=53.0
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHH-hccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQ-LNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
....|+-+|+.|+.+.| |.+...+|.-+|+. +| ...=.+-.++...+...+|+|.|++|.+.+..
T Consensus 294 t~~iiq~afk~f~v~eD-g~~ge~~ls~ilq~~lg-------v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 294 TPVIIQYAFKRFSVAED-GISGEHILSLILQVVLG-------VEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred cHHHHHHHHHhcccccc-cccchHHHHHHHHHhcC-------cceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 34567778999999999 99999999988876 45 33445678899999999999999999876654
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=0.76 Score=45.49 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=57.3
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.++.+.+-+-|+.+-.|-. |.|+-.--+..+.+-. ++-.|+..|..-.|.|.||-+++.||+..+.
T Consensus 227 ~EQReYYvnQFrtvQpDp~-gfisGsaAknFFtKSk-------lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPH-GFISGSAAKNFFTKSK-------LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHHhhhhcccCCcc-cccccHHHHhhhhhcc-------CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3455667778999999999 9999999999998854 7788999999999999999999999997763
No 108
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.03 E-value=0.48 Score=36.60 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=29.2
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
....+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 51 ~~~~v~~i~~elD~n~d-G~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKD-NEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHH
Confidence 34579999999999999 9999999999988764
No 109
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=87.07 E-value=0.61 Score=35.71 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=28.4
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
..++.++++.+|.|+| |.|+.+||..++..+.
T Consensus 51 ~~~~~~ll~~~D~d~D-G~I~f~EF~~l~~~l~ 82 (89)
T cd05023 51 PGVLDRMMKKLDLNSD-GQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 4678999999999999 9999999999887764
No 110
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=86.88 E-value=0.69 Score=43.74 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=52.8
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
....++.-+|..+|.|.| |.++..||+.+- ++ -.+.-|+-+|...|...||.|+-+|+..-++.
T Consensus 247 ~CKds~gWMFnklD~N~D-l~Ld~sEl~~I~--ld-------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYD-LLLDQSELRAIE--LD-------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred chhhhhhhhhhccccccc-cccCHHHhhhhh--cc-------CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 344567788999999999 999999998763 22 44677899999999999999999999965544
No 111
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=86.48 E-value=1.4 Score=33.66 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=28.6
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
..++..+|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~d-G~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQD-GQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 5779999999999999 9999999999887754
No 112
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=86.08 E-value=1.6 Score=29.30 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=26.1
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQL 332 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~ 332 (445)
.....+..+|+..|++++ |.+..+|+....+.|
T Consensus 18 ~~~~yA~~LFq~~D~s~~-g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQS-GRLEGEEFEEFYKRL 50 (51)
T ss_dssp --HHHHHHHHHHH-SSSS-SEBEHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCC-CCccHHHHHHHHHHh
Confidence 344567789999999999 999999999988764
No 113
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=85.75 E-value=1.6 Score=33.44 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=29.7
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
.....+.++|+.+|.|+| |.|+..|+-.++..+.
T Consensus 45 ~d~~~vd~im~~LD~n~D-g~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 45 NDPMAVDKIMKDLDDCRD-GKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 455789999999999999 9999999998887764
No 114
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=85.72 E-value=0.77 Score=35.04 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=29.6
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
....++.++|+.+|.|++ |.|+.+||-..+..+.
T Consensus 48 ~t~~ev~~m~~~~D~d~d-G~Idf~EFv~lm~~l~ 81 (88)
T cd05029 48 LQDAEIAKLMEDLDRNKD-QEVNFQEYVTFLGALA 81 (88)
T ss_pred CCHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHH
Confidence 355789999999999999 9999999998887764
No 115
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=85.48 E-value=1.1 Score=40.28 Aligned_cols=58 Identities=19% Similarity=0.365 Sum_probs=49.4
Q ss_pred cccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 309 AFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 309 ~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
..+|.|.| |.++.+||...+--++ ...+-.++..+|..-|.|++.+++.+|.++.-|-
T Consensus 288 ElIDsNhD-GivTaeELe~y~dP~n-----~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~ 345 (362)
T KOG4251|consen 288 ELIDSNHD-GIVTAEELEDYVDPQN-----FRLALNEVNDIMALTDANNDEKLSLEELLERDWL 345 (362)
T ss_pred HHhhcCCc-cceeHHHHHhhcCchh-----hhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhh
Confidence 45799999 9999999999876666 4466778999999999999999999999876554
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.41 E-value=2 Score=45.07 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=45.7
Q ss_pred Hhccccc--cCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 306 DAFAFLK--ADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 306 ~~F~~~D--~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
+-|+.|+ +-+. |+|+-..-+.++..-| ++..-+-+|..-.|.|.||++|..||.-.|
T Consensus 17 K~~~qF~~Lkp~~-gfitg~qArnfflqS~-------LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 17 KHDAQFGQLKPGQ-GFITGDQARNFFLQSG-------LPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred HHHHHHhccCCCC-CccchHhhhhhHHhcC-------CChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 3344444 3566 9999999999998877 667788999999999999999999996333
No 117
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=85.40 E-value=0.83 Score=45.19 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhccCccccccccCCcccccccc
Q 013328 339 HGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTTWSDQRNDLNDEDEDGFVK 392 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (445)
......+++.+|+.+|.|+||.|+.+||+. ...++...|.+.+|.++..|.
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---~~~~F~~~D~d~DG~Is~eEf 379 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---SDAVFDALDLNHDGKITPEEM 379 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---HHHHHHHhCCCCCCCCcHHHH
Confidence 456678899999999999999999999973 234566667777777776653
No 118
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=84.11 E-value=1 Score=30.64 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 346 TKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 346 ~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
+..++..+|.+++|.|+++||...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l 26 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAAL 26 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 5778999999999999999998655
No 119
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=83.97 E-value=1.5 Score=33.89 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 344 EETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 344 ~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
.+++.+|..+|.|++|.|+++|+.+.+..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34677889999999999999999876643
No 120
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=82.67 E-value=0.66 Score=35.84 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=29.6
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
...++.++|+.+|.+++ |.|+.+||..++..++
T Consensus 49 s~~ei~~~~~~~D~~~d-g~I~f~eF~~l~~~~~ 81 (94)
T cd05031 49 DPMAVDKIMKDLDQNRD-GKVNFEEFVSLVAGLS 81 (94)
T ss_pred cHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 44678899999999999 9999999999998877
No 121
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=82.52 E-value=1 Score=36.36 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=24.7
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHH
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEAL 329 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l 329 (445)
...+...|+.+|.|+| |.||.+|+..+|
T Consensus 79 e~~~~~f~~~~D~n~D-g~IS~~Ef~~cl 106 (116)
T cd00252 79 EHCIKPFFESCDLDKD-GSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCC-CCCCHHHHHHHH
Confidence 3446778999999999 999999999998
No 122
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.00 E-value=2.6 Score=32.13 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=28.3
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
...++.++++.+|.|++ |.|+.+||..++..+.
T Consensus 49 ~~~~v~~~i~~~D~n~d-G~v~f~eF~~li~~~~ 81 (88)
T cd05027 49 EQEVVDKVMETLDSDGD-GECDFQEFMAFVAMVT 81 (88)
T ss_pred CHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 34669999999999999 9999999998887654
No 123
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=81.61 E-value=1.9 Score=45.31 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=55.4
Q ss_pred chHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 302 LTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 302 ~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
.-+..+|+..|++++ |.++..+...+++.+. ..+....+..++++.|..+++++..++|++.-
T Consensus 136 ~wi~~~~~~ad~~~~-~~~~~~~~~~~~~~~n-----~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKN-GHMSFDEVLDLLKQLN-----VQLSESKARRLFKESDNSQTGKLEEEEFVKFR 198 (746)
T ss_pred HHHHHHHHHHccccc-cccchhhHHHHHHHHH-----HhhhHHHHHHHHHHHHhhccceehHHHHHHHH
Confidence 346667999999999 9999999999999988 66888889999999999999999999998544
No 124
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=81.15 E-value=1.5 Score=33.69 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=28.9
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
....+.++|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 s~~~v~~i~~~~D~d~~-G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 50 DADAVDKIMKELDENGD-GEVDFQEFVVLVAALT 82 (92)
T ss_pred CHHHHHHHHHHHCCCCC-CcCcHHHHHHHHHHHH
Confidence 34678999999999999 9999999999887764
No 125
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=79.97 E-value=2.9 Score=45.10 Aligned_cols=68 Identities=12% Similarity=-0.057 Sum_probs=54.6
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCH-----HHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLAD-----EETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
+....+++++|..+|+... |.++.+++..+|..+| ....+ ++...++...|.++.|.++|.||...|-
T Consensus 743 Q~v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg-----~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDG-GAASPEELLRCLMSLG-----YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred HHHHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcC-----cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 3455789999999999999 9999999999999999 44443 2345566677888889999999987663
No 126
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=79.54 E-value=2.2 Score=32.29 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcC--CCCceeeHHHHHHHH
Q 013328 344 EETKDLWVQADI--DGNGVVDYKEFQQRI 370 (445)
Q Consensus 344 ~~~~~~~~~~d~--~~~g~i~~~eF~~~~ 370 (445)
+++..+|..+|. |++|.|+++||...+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l 36 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELL 36 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHH
Confidence 457788999999 899999999999665
No 127
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=79.26 E-value=1.7 Score=43.23 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=49.5
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCC-CCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGH-KHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
...-...+|+.||+.++ |.+|.+++.+++....+-++ +.+.+.+-++.. |..+..-.++|.||.+.+..
T Consensus 106 pDal~~~aFqlFDr~~~-~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~---Fg~~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGN-GEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH---FGDIRKRHLNYAEFTQFLHE 175 (694)
T ss_pred chHHHHHHHHHhcccCC-CceehHHHHHHHhccccccCCCccCCcchHHHH---hhhHHHHhccHHHHHHHHHH
Confidence 34556779999999999 99999999999998765422 344445555554 33344557899999876643
No 128
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=78.85 E-value=2.1 Score=30.11 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=27.4
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHh
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQL 332 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~ 332 (445)
....+.++|+.+|.+++ |.|+.+|+..++..+
T Consensus 31 ~~~~~~~i~~~~d~~~~-g~i~~~ef~~~~~~~ 62 (67)
T cd00052 31 PRSVLAQIWDLADTDKD-GKLDKEEFAIAMHLI 62 (67)
T ss_pred CHHHHHHHHHHhcCCCC-CcCCHHHHHHHHHHH
Confidence 44568889999999999 999999999887654
No 129
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=78.02 E-value=2.7 Score=41.61 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=43.1
Q ss_pred ccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHh----cCCCCceeeHHHHHHHHhc
Q 013328 308 FAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQA----DIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 308 F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~----d~~~~g~i~~~eF~~~~~~ 372 (445)
|-.+|+|.| |.|+.++|+.--. ..++.--++.+|.+. -.-.+|+++|++|+-.++.
T Consensus 284 FweLD~Dhd-~lidk~~L~ry~d--------~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 284 FWELDTDHD-GLIDKEDLKRYGD--------HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred Hhhhccccc-cccCHHHHHHHhc--------cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 678899999 9999999987532 235566788999843 3346899999999976654
No 130
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=77.25 E-value=2.8 Score=27.29 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=24.9
Q ss_pred ccchHHHhcccc-ccCCCCCcccHHHHHHHHHH
Q 013328 300 ASLTETDAFAFL-KADNDGDYITYSGFCEALEQ 331 (445)
Q Consensus 300 ~~~~~~~~F~~~-D~~~~~G~i~~~el~~~l~~ 331 (445)
....+..+|+.+ .++|++.+++..||+.+|..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345678889887 45666579999999999875
No 131
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=76.84 E-value=1.9 Score=37.70 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 344 EETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 344 ~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
+..+.+|+.+|.+.||.||+.|...+|
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mm 125 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMM 125 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHH
Confidence 356889999999999999999998655
No 132
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=76.70 E-value=7.3 Score=25.66 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 322 YSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 322 ~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
.+|...+|..|| +++.++++.+..... ...++.+|.++..+.
T Consensus 3 ~~d~~~AL~~LG-------y~~~e~~~av~~~~~--~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 3 LEDALEALISLG-------YSKAEAQKAVSKLLE--KPGMDVEELIKQALK 44 (47)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHHHH--STTS-HHHHHHHHHC
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHhhc--CCCCCHHHHHHHHHh
Confidence 468889999999 789999999999875 445678888865544
No 133
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=74.90 E-value=1.7 Score=41.65 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=43.2
Q ss_pred eEEEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCCCcCcchhHhh
Q 013328 167 EILIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNGSKRGHVYKFL 230 (445)
Q Consensus 167 ~v~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l 230 (445)
.+.+.++|+.|.+- ....|..|...+++.+.+... ..-+.+++||||..|.+..+-..
T Consensus 139 ~li~~~~~~f~~p~--~~~er~r~t~~~lnri~e~~~----~~w~~l~~~l~n~e~gd~~~va~ 196 (378)
T COG5239 139 GLILAVTHLFWHPY--GYYERFRQTYILLNRIGEKDN----IAWVCLFVGLFNKEPGDTPYVAN 196 (378)
T ss_pred hhhhhhhHhhcccc--eeehhhhHHHHHHHHHhhhhh----cchhheeeeeccCCCCCceeEEe
Confidence 46778999988653 345699999999998877533 22467899999999987665544
No 134
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.21 E-value=12 Score=32.25 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=50.0
Q ss_pred chHHHhccccccCCCCCcccHHHHHHHHHHhccC----------------------------------------------
Q 013328 302 LTETDAFAFLKADNDGDYITYSGFCEALEQLNLT---------------------------------------------- 335 (445)
Q Consensus 302 ~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~---------------------------------------------- 335 (445)
..|++-...||.|+| |.|...|--.+++.||+.
T Consensus 7 T~LQqHvaFFDrd~D-GiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKD-GIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred cHHhhhhceeCCCCC-eeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 456777788999999 999999988888877731
Q ss_pred --CCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 336 --GHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 336 --~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
+.--.+.++..++|+..++..+.+.+++.|..+++..
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 0000113344688888888888888898888855533
No 135
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=73.84 E-value=5.6 Score=37.62 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=51.7
Q ss_pred chHHHhccccccCCCCCcccHHHHHHHHHHh-ccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHH
Q 013328 302 LTETDAFAFLKADNDGDYITYSGFCEALEQL-NLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 367 (445)
Q Consensus 302 ~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 367 (445)
..+...|..||.+++ |.++..|--..+.-+ | ...+.+-++--++.|+.+.||.+.-.+|.
T Consensus 259 d~l~~~f~LFde~~t-g~~D~re~v~~lavlc~-----p~~t~~iiq~afk~f~v~eDg~~ge~~ls 319 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTT-GNGDYRETVKTLAVLCG-----PPVTPVIIQYAFKRFSVAEDGISGEHILS 319 (412)
T ss_pred hhhhhhhheecCCCC-CcccHHHHhhhheeeeC-----CCCcHHHHHHHHHhcccccccccchHHHH
Confidence 457789999999999 999999988777665 4 55778888999999999999999998886
No 136
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=70.21 E-value=24 Score=35.44 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=44.8
Q ss_pred hHHHhc-cccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 303 TETDAF-AFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 303 ~~~~~F-~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
++..+. ..-|.-+| |-|+.+||+..=.-+. .++..-...++-||+.++|.++|++|...+-
T Consensus 74 ~~v~Lla~iaD~tKD-glisf~eF~afe~~lC-------~pDal~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 74 KIVRLLASIADQTKD-GLISFQEFRAFESVLC-------APDALFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred HHHHHHHhhhhhccc-ccccHHHHHHHHhhcc-------CchHHHHHHHHHhcccCCCceehHHHHHHHh
Confidence 344444 34477888 9999999986533333 3455667889999999999999999986553
No 137
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=67.60 E-value=5.1 Score=36.49 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeecccC
Q 013328 60 FGRNQRILDWLLYERSSIICLQEFWVG 86 (445)
Q Consensus 60 ~~R~~~i~~~I~~~~~DII~LQEv~~~ 86 (445)
-.|+..|++.-....+.||||||.|..
T Consensus 99 h~r~kaiieaaa~agvniiclqeawtm 125 (387)
T KOG0808|consen 99 HDRLKAIIEAAAVAGVNIICLQEAWTM 125 (387)
T ss_pred HHHHHHHHHHHHhcCccEEEeehhhcC
Confidence 347788888888889999999999743
No 138
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=63.28 E-value=8.9 Score=39.78 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=49.2
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHH
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEF 366 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 366 (445)
...-++.+|+.+|.+++ |.|+..+|..+|..+- .....+.+.-+++-+|.+++ ..+-+|-
T Consensus 553 s~~~~~rlF~l~D~s~~-g~Ltf~~lv~gL~~l~-----~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMT-GLLTFKDLVSGLSILK-----AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCc-ceeEHHHHHHHHHHHH-----hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 33567889999999999 9999999999999885 33445667888899999988 7777765
No 139
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=60.97 E-value=7 Score=30.83 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=26.8
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHh
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQL 332 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~ 332 (445)
....|.+++..-|.|++ |+++.+||.-+|.-+
T Consensus 41 ~~~~L~~IW~LaD~~~d-G~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 41 PRDVLAQIWNLADIDND-GKLDFEEFAIAMHLI 72 (104)
T ss_dssp SHHHHHHHHHHH-SSSS-SEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCCCC-CcCCHHHHHHHHHHH
Confidence 34778999999999999 999999999888753
No 140
>PF14658 EF-hand_9: EF-hand domain
Probab=58.76 E-value=22 Score=25.41 Aligned_cols=45 Identities=7% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhh--hccchHHHhccccccCCCCCcccHHHHHHHHHH
Q 013328 287 EAVFGMFKCLLR--RASLTETDAFAFLKADNDGDYITYSGFCEALEQ 331 (445)
Q Consensus 287 ~~v~~~~~~~~~--~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~ 331 (445)
..+...+...-. -...+|+.+-+.+|+++.+|.|+.+.|..+|+.
T Consensus 18 ~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 18 SDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 344444444332 233589999999999887699999999999875
No 141
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=55.82 E-value=11 Score=30.09 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 339 HGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 339 ~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
+-+++++.+.+..++-.|..|.|.|.||+..+
T Consensus 2 qiLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 2 QILTDEQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp ----HHHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred ccccHHHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 34789999999999999999999999999655
No 142
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=55.32 E-value=15 Score=30.57 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC-------CCceeeHHHHHHHH
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID-------GNGVVDYKEFQQRI 370 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~eF~~~~ 370 (445)
+.||..||.++=+-+. .+...+++++++|..+ ..+.|+|+.|...|
T Consensus 6 ~~lsp~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm 58 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFM 58 (138)
T ss_dssp S-S-HHHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHH
Confidence 6899999988655544 4566899999999544 35689999998655
No 143
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=51.44 E-value=77 Score=24.24 Aligned_cols=66 Identities=11% Similarity=0.233 Sum_probs=40.1
Q ss_pred hHHHhccccccCCCCCcccHHHHHHHHHHh-ccC---CC--CCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 303 TETDAFAFLKADNDGDYITYSGFCEALEQL-NLT---GH--KHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 303 ~~~~~F~~~D~~~~~G~i~~~el~~~l~~~-g~~---~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
.++-+|+.+ .|.+ |.++..-|...|+.+ .+. || .....+..++..|... ..+-.|+.++|+..|..
T Consensus 4 KyRylFsli-sd~~-g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 4 KYRYLFSLI-SDSN-GCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHH-S-TT-S-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHH-cCCC-CCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 466678887 6778 999999998888752 000 12 1234677788888876 35678999999987755
No 144
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.01 E-value=4.8 Score=44.22 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=55.4
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
.....+.++|...|.+.+ |.|+..+....+...| ++...+..+....|.++.|.+++.||.-.+
T Consensus 280 ~d~~~~~~if~q~d~~~d-G~I~s~~~~~~f~~~g-------l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDND-GSISSNEARNIFLPFG-------LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHHHHhccccCC-CcccccccccccccCC-------CChhhhhhhhhhcchhccCcccccccchhh
Confidence 344556679999999999 9999999999988877 778889999999999999999999997444
No 145
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=49.53 E-value=54 Score=25.88 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=42.7
Q ss_pred HHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHH
Q 013328 305 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 367 (445)
Q Consensus 305 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 367 (445)
..+|-.++.-++ -..+..+++.+|...| ....++.++.++.++ +|+ +.+|.+
T Consensus 4 vaAYLL~~lgGn-~~psa~DikkIl~sVG-----~E~d~e~i~~visel----~GK-~i~ElI 55 (112)
T KOG3449|consen 4 VAAYLLAVLGGN-ASPSASDIKKILESVG-----AEIDDERINLVLSEL----KGK-DIEELI 55 (112)
T ss_pred HHHHHHHHhcCC-CCCCHHHHHHHHHHhC-----cccCHHHHHHHHHHh----cCC-CHHHHH
Confidence 345666677777 7899999999999999 778999999999998 455 788887
No 146
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=49.52 E-value=19 Score=30.02 Aligned_cols=57 Identities=12% Similarity=0.285 Sum_probs=41.6
Q ss_pred cccccCCCCCcccHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 309 AFLKADNDGDYITYSGFCEALEQLNLTGHKHG-LADEETKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 309 ~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
..|-.||. |.++.+++-.++.-+. .. +.+=.+.-.++-+|-|+|+.|--++....+.
T Consensus 78 e~FSeDG~-GnlsfddFlDmfSV~s-----E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 78 EVFSEDGR-GNLSFDDFLDMFSVFS-----EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred HHhccCCC-CcccHHHHHHHHHHHH-----hhChHHhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 33446999 9999999999888765 22 2222345667888999999999888875553
No 147
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=49.20 E-value=37 Score=24.07 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD 354 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d 354 (445)
--|+.+-++..+..+| ..+++..++++++.+.
T Consensus 30 Ppine~mir~M~~QMG-----~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMG-----RKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHHH
Confidence 4899999999999999 9999999999998763
No 148
>PRK00523 hypothetical protein; Provisional
Probab=47.92 E-value=39 Score=24.49 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=29.5
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD 354 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d 354 (445)
--|+.+-++..+..+| ..+++..++++++.+.
T Consensus 38 Ppine~mir~M~~QMG-----qKPSekki~Q~m~~mk 69 (72)
T PRK00523 38 PPITENMIRAMYMQMG-----RKPSESQIKQVMRSVK 69 (72)
T ss_pred cCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHHH
Confidence 5899999999999999 9999999999998873
No 149
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.93 E-value=16 Score=35.34 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=52.0
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHH-HHHHHHHhcCCCCceeeHHHHHHHHh
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEE-TKDLWVQADIDGNGVVDYKEFQQRIW 371 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~eF~~~~~ 371 (445)
.....++++|+.+|..++ |+|+.+-|+.+|..++ ...++.+ |-.+-+.+|..+-|.|-.+.|...+.
T Consensus 306 ~~s~q~rR~f~a~d~~d~-nfis~s~~~~vm~~~N-----~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDN-NFISCSGLQIVMTALN-----RLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CCCHHHHhhhhccCccCC-CeeecHHHHHHHHHhc-----ccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 456789999999999999 9999999999999988 3455443 44444567888888888888875443
No 150
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=46.19 E-value=29 Score=18.61 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=12.3
Q ss_pred ccCCCCCcccHHHHHHH
Q 013328 312 KADNDGDYITYSGFCEA 328 (445)
Q Consensus 312 D~~~~~G~i~~~el~~~ 328 (445)
|.|+| |.|+.-++..+
T Consensus 1 DvN~D-G~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGD-GKVNAIDLALL 16 (21)
T ss_dssp -TTSS-SSSSHHHHHHH
T ss_pred CCCCC-CcCCHHHHHHH
Confidence 67899 99999887644
No 151
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=45.25 E-value=29 Score=26.94 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=36.9
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
|.++..|...+-.-+. ....+++++.+.++..+....+...++.+|.+.+..
T Consensus 14 G~v~~~E~~~i~~~l~---~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 14 GEYDEEERAAIDRLLA---ERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred CCCCHHHHHHHHHHHH---HHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8999999766554321 001377888899988887776777899999876544
No 152
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=44.01 E-value=20 Score=37.06 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=41.1
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHhcCCCCceeeHHHHHH
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHK-HGLADEETKDLWVQADIDGNGVVDYKEFQQ 368 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 368 (445)
....+..+|..||.|+| |.++..||+.++...+ +.+ ..-...+.-. .+..|.++|+-|+.
T Consensus 313 ~~~Fl~~~f~~~D~d~D-g~L~p~El~~LF~~~P--~~pW~~~~~~~~t~------~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDND-GALSPEELKDLFSTAP--GSPWTSSPYKDSTV------KNERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHHHhccCCCC-CCcCHHHHHHHhhhCC--CCCCCCCcccccce------ecccceeehhhHHH
Confidence 34557889999999999 9999999999999875 111 0001111111 12578999999983
No 153
>PLN02230 phosphoinositide phospholipase C 4
Probab=41.23 E-value=76 Score=33.38 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=48.9
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC-------CCCceeeHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADI-------DGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~~~~ 372 (445)
...++..+|..+- ++. +.++.++|...|..-. +.....+.++++.++..+-. -..+.++++.|..+|+.
T Consensus 27 p~~ei~~lf~~~s-~~~-~~mt~~~l~~FL~~~Q--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYA-DGD-AHMSPEQLQKLMAEEG--GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHh-CCC-CccCHHHHHHHHHHhC--CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3467888898883 555 7999999999998864 11123466777778765421 13456999999988876
Q ss_pred c
Q 013328 373 T 373 (445)
Q Consensus 373 ~ 373 (445)
.
T Consensus 103 ~ 103 (598)
T PLN02230 103 T 103 (598)
T ss_pred c
Confidence 3
No 154
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.08 E-value=28 Score=29.12 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=31.4
Q ss_pred CCceEEEEEeeeeCCCCCCChhh-HHHHHHHHHHHHHHHHHHcCC-C------CCcEEEeecCCCCcCcc
Q 013328 164 LRQEILIVNTHLLFPHDSSLSLV-RLHQVYKILQHVESYQKEHNL-K------PIPIILCGDWNGSKRGH 225 (445)
Q Consensus 164 ~g~~v~v~n~HL~~~~~~~~~~~-R~~q~~~l~~~l~~~~~~~~~-~------~~pvIl~GDFN~~p~s~ 225 (445)
.+..+..++.|+.++... ... |..-...+.+...-....... + ..-|++.||+|.-....
T Consensus 57 ~~~~~~~v~~hl~~~~~~--~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 57 SQTSFCFVISHLTSGVHK--VYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred cCceEEEEEecccccchh--hHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 457799999999875421 222 333344333333211100000 1 12488999999865543
No 155
>PRK01844 hypothetical protein; Provisional
Probab=38.96 E-value=63 Score=23.46 Aligned_cols=32 Identities=6% Similarity=0.037 Sum_probs=29.4
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD 354 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d 354 (445)
--|+.+-++..+..+| ..+++..++++++.+.
T Consensus 37 Ppine~mir~Mm~QMG-----qkPSekki~Q~m~~mk 68 (72)
T PRK01844 37 PPINEQMLKMMMMQMG-----QKPSQKKINQMMSAMN 68 (72)
T ss_pred CCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHHH
Confidence 5899999999999999 9999999999998873
No 156
>PLN02952 phosphoinositide phospholipase C
Probab=36.50 E-value=1.3e+02 Score=31.74 Aligned_cols=69 Identities=7% Similarity=-0.037 Sum_probs=48.7
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc-------CCCCceeeHHHHHHHHhc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD-------IDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d-------~~~~g~i~~~eF~~~~~~ 372 (445)
...++..+|..+- .+. +.++.++|...|.... ++ ...+.++++.++..+- ..+.+.++++.|..+|+.
T Consensus 36 ~r~ei~~lf~~~~-~~~-~~mt~~~l~~FL~~~Q--~e-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 36 PPDDVKDVFCKFS-VGG-GHMGADQLRRFLVLHQ--DE-LDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ChHHHHHHHHHHh-CCC-CccCHHHHHHHHHHhC--CC-cCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 4578999999884 344 6899999999999864 11 1356677777766441 112346899999988875
Q ss_pred c
Q 013328 373 T 373 (445)
Q Consensus 373 ~ 373 (445)
.
T Consensus 111 ~ 111 (599)
T PLN02952 111 D 111 (599)
T ss_pred c
Confidence 3
No 157
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.63 E-value=76 Score=22.85 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=33.3
Q ss_pred HHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhc
Q 013328 305 TDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQAD 354 (445)
Q Consensus 305 ~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d 354 (445)
++.|...=+|+ -.|+.+-++..+..+| ..+++..++++++.+-
T Consensus 26 rk~~~k~lk~N--Ppine~~iR~M~~qmG-----qKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQLKDN--PPINEEMIRMMMAQMG-----QKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHhhC--CCCCHHHHHHHHHHhC-----CCchHHHHHHHHHHHH
Confidence 33444333333 5899999999999999 9999999999998763
No 158
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=35.52 E-value=39 Score=25.20 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=22.6
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCC
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDG 357 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~ 357 (445)
|+||.+|+..+|.... ++.+.++.++..+...|
T Consensus 20 G~lT~~eI~~~L~~~~-------~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 20 GYLTYDEINDALPEDD-------LDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp SS-BHHHHHHH-S-S----------HHHHHHHHHHHHTT-
T ss_pred CcCCHHHHHHHcCccC-------CCHHHHHHHHHHHHHCC
Confidence 9999999999987644 77889999998886655
No 159
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=35.45 E-value=53 Score=23.38 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCC
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDG 357 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~ 357 (445)
+-++..+|...|..-| ..++++.|...++.+|.+|
T Consensus 12 ~P~g~~~l~~~L~~~g-----~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 12 KPLGRKQLAEELKLRG-----EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCHHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHCC
Confidence 6799999999999888 7899999999999999876
No 160
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=35.06 E-value=20 Score=31.48 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=38.8
Q ss_pred ccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHH
Q 013328 308 FAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQ 368 (445)
Q Consensus 308 F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 368 (445)
|-.+|...-+|++|..||.-+-.- .-+-+.-+..+|...|.|+||.|..+|+-.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap-------~ipme~c~~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP-------LIPMEHCTTRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred eccccCCCccccccccccccccCC-------cccHHhhchhhhhcccCCCCCceeHHHhhc
Confidence 567777543399999998653211 112244578899999999999999999963
No 161
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=34.57 E-value=51 Score=27.53 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=43.0
Q ss_pred CCCCcccHHHHHHHHHHh----ccCCCCCCCCHHHHHHHHHHhcCCCCce-eeHHHHHHH
Q 013328 315 NDGDYITYSGFCEALEQL----NLTGHKHGLADEETKDLWVQADIDGNGV-VDYKEFQQR 369 (445)
Q Consensus 315 ~~~G~i~~~el~~~l~~~----g~~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~eF~~~ 369 (445)
|+ -.||.+||.+++..- .+.|.+..++.++++++.+.+..-+.+. ++..|-++.
T Consensus 80 Gd-~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GD-EELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CC-EECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 55 689999999988752 3347778889999999999998876664 999887754
No 162
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=34.20 E-value=37 Score=35.46 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.4
Q ss_pred CCCCCCCcceeEEeee
Q 013328 421 NYSLSDHARLTVVFSP 436 (445)
Q Consensus 421 ~~~~~~~~~~~~~~~~ 436 (445)
++..|||=++.+.|..
T Consensus 576 ei~~SDHRPV~A~F~v 591 (621)
T PLN03191 576 EIRLSDHRPVSSMFLV 591 (621)
T ss_pred CcccCCchhcceEEEE
Confidence 4566999999888763
No 163
>PLN02222 phosphoinositide phospholipase C 2
Probab=33.75 E-value=96 Score=32.57 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=49.8
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC-CCCceeeHHHHHHHHhcc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADI-DGNGVVDYKEFQQRIWKT 373 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~~~~~ 373 (445)
...++..+|..+-. + +.++.++|...|.... ++ ...+.+.++.++..+.. -..+.++++.|..+|...
T Consensus 23 ~~~ei~~if~~~~~--~-~~mt~~~l~~FL~~~Q--~~-~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--N-GVMTVDHLHRFLIDVQ--KQ-DKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--C-CCcCHHHHHHHHHHhc--CC-ccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 44578888887742 5 7999999999998864 11 12467788888887632 235679999999888663
No 164
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=32.46 E-value=1e+02 Score=20.64 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=31.2
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQ 352 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~ 352 (445)
...|++.|.. + .+.+..++..+...+| ++..+|..+|..
T Consensus 12 ~~~Le~~f~~-----~-~~P~~~~~~~la~~~~-------l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----N-PYPSREEREELAKELG-------LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----C-CCCCHHHHHHHHHHHC-------cCHHHHHHHHHH
Confidence 3456777776 5 7889999999999988 788899988864
No 165
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=31.68 E-value=34 Score=32.83 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=60.6
Q ss_pred hhhhccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc---
Q 013328 296 LLRRASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK--- 372 (445)
Q Consensus 296 ~~~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~--- 372 (445)
.++.-...|+..|+.+=.+.+ +......+..+-..+. ....++-..++.-||..+|.|.||.++-.|.- .|..
T Consensus 205 eL~~lg~RL~dWF~~lhe~s~-~~~~~ss~~~~~~~~d--~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~-~I~ldkn 280 (434)
T KOG3555|consen 205 ELRRLGNRLRDWFKALHEDSS-QNDKTSSLHSAASGFD--TSILPICKDSLGWMFNKLDTNYDLLLDQSELR-AIELDKN 280 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-ccCcchhhcccccccc--cccCcchhhhhhhhhhccccccccccCHHHhh-hhhccCc
Confidence 344556778999999877777 7777777766644432 11234567899999999999999999999986 3422
Q ss_pred ----cCccccccccCCcccc
Q 013328 373 ----TTWSDQRNDLNDEDED 388 (445)
Q Consensus 373 ----~~~~~~~~~~~~~~~~ 388 (445)
+..++..|...++.|.
T Consensus 281 E~CikpFfnsCD~~kDg~iS 300 (434)
T KOG3555|consen 281 EACIKPFFNSCDTYKDGSIS 300 (434)
T ss_pred hhHHHHHHhhhcccccCccc
Confidence 2233444555555444
No 166
>PLN02228 Phosphoinositide phospholipase C
Probab=28.50 E-value=1.5e+02 Score=30.99 Aligned_cols=68 Identities=9% Similarity=0.267 Sum_probs=48.8
Q ss_pred ccchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCC----CCceeeHHHHHHHHhcc
Q 013328 300 ASLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADID----GNGVVDYKEFQQRIWKT 373 (445)
Q Consensus 300 ~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~ 373 (445)
...++..+|..+- ++ +.++.++|...|.... ++ ...+.+.+++++..+... ..|.++++.|..+|...
T Consensus 22 ~~~ei~~if~~~s--~~-~~~t~~~~~~FL~~~Q--~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYS--RN-GKMSFDELLRFVSEVQ--GE-RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhc--CC-CccCHHHHHHHHHHhc--CC-ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 4466777887764 34 6899999999998864 11 124566788999887543 34679999999888653
No 167
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=27.91 E-value=1.1e+02 Score=28.36 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=53.8
Q ss_pred ccccceeeecCCcccccccccchhHHHHHHHHHhhhhccchHHHhcccc-ccCCCCCcccHHHHHHHHHH--hccCCCCC
Q 013328 263 ICGVDFIWLLNPNKYRKLLKASWSEAVFGMFKCLLRRASLTETDAFAFL-KADNDGDYITYSGFCEALEQ--LNLTGHKH 339 (445)
Q Consensus 263 ~~rIDyi~~~~~~~~~~~~~~s~~~~v~~~~~~~~~~~~~~~~~~F~~~-D~~~~~G~i~~~el~~~l~~--~g~~~~~~ 339 (445)
..||||||+.... ....--.|...+++.+...+ +.+|..- -..-- |+||.+.|..+++. +| .
T Consensus 87 f~~ld~iylNAg~--~~~~gi~w~~avf~~fsnpv-------~amt~pt~~~~t~-G~is~D~lg~iFetnVFG-----h 151 (341)
T KOG1478|consen 87 FQRLDYIYLNAGI--MPNPGINWKAAVFGLFSNPV-------IAMTSPTEGLLTQ-GKISADGLGEIFETNVFG-----H 151 (341)
T ss_pred hhhccEEEEcccc--CCCCcccHHHHHHHHhhchh-------HHhcCchhhhhhc-ceecccchhhHhhhcccc-----h
Confidence 4679999984432 23345679999998876433 3333221 12334 89999999999876 34 3
Q ss_pred CCCHHHHHHHHHHhcC----------CCCceeeHHHHH
Q 013328 340 GLADEETKDLWVQADI----------DGNGVVDYKEFQ 367 (445)
Q Consensus 340 ~~~~~~~~~~~~~~d~----------~~~g~i~~~eF~ 367 (445)
-.-..+++.++-.-|. .....+++++|-
T Consensus 152 fyli~~l~pll~~~~~~~lvwtSS~~a~kk~lsleD~q 189 (341)
T KOG1478|consen 152 FYLIRELEPLLCHSDNPQLVWTSSRMARKKNLSLEDFQ 189 (341)
T ss_pred hhhHhhhhhHhhcCCCCeEEEEeecccccccCCHHHHh
Confidence 3334455555544332 123457888885
No 168
>COG5562 Phage envelope protein [General function prediction only]
Probab=27.00 E-value=44 Score=27.45 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhccCcc
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTTWS 376 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 376 (445)
|.|....++....- . ......-++. ....+..|+.+|+||+..++....+
T Consensus 55 ~~Il~~g~k~~~~V-~-----~~~n~~~i~~---al~~~qsGqttF~ef~~~la~AGVf 104 (137)
T COG5562 55 GVILIKGVKKVVGV-A-----EVFNTTLIKT---ALRRHQSGQTTFEEFCSALAEAGVF 104 (137)
T ss_pred CEEEeeccccccce-e-----cccCHHHHHH---HHHHHhcCCccHHHHHHHHHhCCeE
Confidence 56666665554221 1 2233333333 4455678999999999999886654
No 169
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.99 E-value=70 Score=26.61 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=41.4
Q ss_pred HhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc
Q 013328 306 DAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK 372 (445)
Q Consensus 306 ~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 372 (445)
-+|+..+.| |.++..|......-+. +...++.++++.++.....-+...|||-.|...|.+
T Consensus 34 Llf~Vm~AD---G~v~~~E~~a~r~il~---~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEAD---GTVSESEREAFRAILK---ENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhcc---cCcCHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 467777554 7788877554433221 114488899999998877777788999888765543
No 170
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=26.28 E-value=92 Score=24.31 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=17.6
Q ss_pred CCCcEEEeecCCCCcCcchhHhhh
Q 013328 208 KPIPIILCGDWNGSKRGHVYKFLR 231 (445)
Q Consensus 208 ~~~pvIl~GDFN~~p~s~~~~~l~ 231 (445)
++.++|+.|| |...+-..|..+.
T Consensus 63 P~~kfiLIGD-sgq~DpeiY~~ia 85 (100)
T PF09949_consen 63 PERKFILIGD-SGQHDPEIYAEIA 85 (100)
T ss_pred CCCcEEEEee-CCCcCHHHHHHHH
Confidence 7788999999 6666666666664
No 171
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=24.37 E-value=53 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=18.3
Q ss_pred hHHHhccccccCCCCCcccHHHHHH
Q 013328 303 TETDAFAFLKADNDGDYITYSGFCE 327 (445)
Q Consensus 303 ~~~~~F~~~D~~~~~G~i~~~el~~ 327 (445)
-+...|+.-|.|+| |.||..|...
T Consensus 89 C~~~F~~~CD~n~d-~~Is~~EW~~ 112 (113)
T PF10591_consen 89 CARPFFRSCDVNKD-GKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHH-TT-S-SSEEHHHHHH
T ss_pred HHHHHHHHcCCCCC-CCCCHHHHcc
Confidence 46678889999999 9999999754
No 172
>PLN02952 phosphoinositide phospholipase C
Probab=24.16 E-value=1.8e+02 Score=30.76 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=41.2
Q ss_pred CCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhccC
Q 013328 315 NDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWKTT 374 (445)
Q Consensus 315 ~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 374 (445)
+. |.++.+|++...+.+-.. ...+..||+.++..+-.+ ++.++.++|.+.+...+
T Consensus 13 ~~-g~l~f~~f~~f~~~~k~~---~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DS-GSYNYKMFNLFNRKFKIT---EAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cC-CCcCHHHHHHHHHHhccc---cCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhC
Confidence 46 899999998877776411 223678999999999554 46899999998775533
No 173
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=24.01 E-value=37 Score=27.92 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=32.3
Q ss_pred CcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHH
Q 013328 318 DYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRI 370 (445)
Q Consensus 318 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 370 (445)
|.|+.+|...+...+. +...++..+.+.++..++.-....+++.+|+..+
T Consensus 38 G~v~~~E~~~i~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 38 GEVDPEEIEAIRQLLA---ERFGLSPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp SS--CHHHHHHHHHHH---HCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 8999999887766651 0023556677777777766555577888887555
No 174
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=23.40 E-value=2.5e+02 Score=24.37 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=34.7
Q ss_pred ceEEEeeccccccccCCCCccccCCCccCChhhHHHHHHHH-HhcC-CCcEEEEe--ecccChhhHHHHHHHHhhccCcc
Q 013328 29 CITCTTFNILAPIYKRLSNENCRESDCRAYWFGRNQRILDW-LLYE-RSSIICLQ--EFWVGNEELVDMYEKRLSDAGYV 104 (445)
Q Consensus 29 ~lrvlT~NV~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~-I~~~-~~DII~LQ--Ev~~~~~~~~~~l~~~l~~~gy~ 104 (445)
-++++.||+....+... . .+.+++. +... +-+||+|= +......+....+...|.+.||.
T Consensus 120 G~~~v~w~~~~~D~~~~-------~---------~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~ 183 (191)
T TIGR02764 120 GYTVVHWSVDSRDWKNP-------G---------VESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYE 183 (191)
T ss_pred CCeEEEecCCCCccCCC-------C---------HHHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCE
Confidence 58899999985532111 0 1233332 3333 45799998 54322223344556666778998
Q ss_pred EEE
Q 013328 105 NFK 107 (445)
Q Consensus 105 ~~~ 107 (445)
+.-
T Consensus 184 ~vt 186 (191)
T TIGR02764 184 FVT 186 (191)
T ss_pred EEE
Confidence 753
No 175
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=22.74 E-value=96 Score=26.25 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCChhhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeecCCC
Q 013328 169 LIVNTHLLFPHDSSLSLVRLHQVYKILQHVESYQKEHNLKPIPIILCGDWNG 220 (445)
Q Consensus 169 ~v~n~HL~~~~~~~~~~~R~~q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~ 220 (445)
.|.-+||...... ..-.|..+-..+.+.+++.++.. ...-+|++||+=.
T Consensus 2 ~isD~HL~~~~~~-~~l~~~~~~~~~~~~~~~~i~~~--~pd~vv~~GDl~~ 50 (156)
T cd08165 2 FLADTHLLGSILG-HWLDKLRREWQMERSFQTSLWLL--QPDVVFVLGDLFD 50 (156)
T ss_pred ccccchhcCCccc-HHHHHHhhhHHHHHHHHHHHHhc--CCCEEEECCCCCC
Confidence 3556787432211 11123334334444444444432 3445999999854
No 176
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=22.55 E-value=4.5e+02 Score=26.82 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=27.6
Q ss_pred hhccchHHHhccccccCCCCCcccHHHHHHHHHHhc
Q 013328 298 RRASLTETDAFAFLKADNDGDYITYSGFCEALEQLN 333 (445)
Q Consensus 298 ~~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g 333 (445)
..+...+.-+|+.-|.+|= =-|+..+|+.+|.-++
T Consensus 124 dtQ~gvL~i~F~~ADd~gL-lLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 124 DTQEGVLNIVFRIADDEGL-LLLDLKDLRAMLQYVS 158 (502)
T ss_pred hHHHHHHHHHHHHhccCCC-ccccHHHHHHHHHHHH
Confidence 4555677778999998887 7889999998887654
No 177
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=22.36 E-value=99 Score=22.61 Aligned_cols=14 Identities=14% Similarity=0.041 Sum_probs=11.7
Q ss_pred CcccHHHHHHHHHH
Q 013328 318 DYITYSGFCEALEQ 331 (445)
Q Consensus 318 G~i~~~el~~~l~~ 331 (445)
|++.-+||+.++..
T Consensus 29 Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 29 GKLRGEEINSLLEA 42 (75)
T ss_pred CcccHHHHHHHHHH
Confidence 89999999888765
No 178
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=22.25 E-value=1.3e+02 Score=22.02 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCCceeeHHHHHHHHhccCc
Q 013328 345 ETKDLWVQADIDGNGVVDYKEFQQRIWKTTW 375 (445)
Q Consensus 345 ~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 375 (445)
||+.++..+-. +.+.|+.++|.+.|...+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~ 30 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQG 30 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhc
Confidence 57889999955 7889999999987755433
No 179
>PLN02223 phosphoinositide phospholipase C
Probab=22.07 E-value=2.1e+02 Score=29.76 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=49.3
Q ss_pred hccchHHHhccccccCCCCCcccHHHHHHHHHHh---ccCCCCCCCCHHHHHHHHHHhcCC--------CCceeeHHHHH
Q 013328 299 RASLTETDAFAFLKADNDGDYITYSGFCEALEQL---NLTGHKHGLADEETKDLWVQADID--------GNGVVDYKEFQ 367 (445)
Q Consensus 299 ~~~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~---g~~~~~~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~ 367 (445)
.....+.++|..+- .+. |.++.+.|.+.|.-| . |+ ...+.++++.++..+-.. ..+.++++.|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~-~~m~~~~l~~fl~~l~~~q--~e-~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~ 87 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGY-DDDMPELLPRFIELLDTEK--DE-DGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLN 87 (537)
T ss_pred CCcHHHHHHHHHhh-cCC-CCCCHHHHHHHHHHHHHhc--cc-ccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHH
Confidence 35567888888873 666 899999999998333 2 11 235677788887765322 23669999999
Q ss_pred HHHhccC
Q 013328 368 QRIWKTT 374 (445)
Q Consensus 368 ~~~~~~~ 374 (445)
++++...
T Consensus 88 ~~L~s~~ 94 (537)
T PLN02223 88 EFLFSTE 94 (537)
T ss_pred HHhcCcc
Confidence 8887643
No 180
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=22.01 E-value=1.4e+02 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=24.4
Q ss_pred cccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcC
Q 013328 311 LKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADI 355 (445)
Q Consensus 311 ~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~ 355 (445)
+..|.+ |+++.+||-..+..-+ ..++.+++++++..-|+
T Consensus 25 L~~d~~-G~v~v~dLL~~~~~~~-----~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 25 LVMDPD-GWVSVDDLLRALRFKG-----LWVTEEDIREVVETDDK 63 (186)
T ss_dssp ----TT---EEHHHHHHHHHHT------TT--HHHHHHHHHH-SS
T ss_pred CccCCC-CCEeHHHHHHHHHHcC-----CCCCHHHHHHHHhhCCC
Confidence 345778 9999999999888766 55889999999887554
No 181
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=21.60 E-value=2.5e+02 Score=20.18 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=6.2
Q ss_pred CCCCHHHHHHHHHH
Q 013328 339 HGLADEETKDLWVQ 352 (445)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (445)
..++.+++..+++.
T Consensus 28 ~~vs~~el~a~lrk 41 (68)
T PF07308_consen 28 FEVSKAELSAWLRK 41 (68)
T ss_pred CccCHHHHHHHHCC
Confidence 33444444444444
No 182
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=21.33 E-value=2e+02 Score=27.26 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=11.0
Q ss_pred CcEEEeecCCCCc
Q 013328 210 IPIILCGDWNGSK 222 (445)
Q Consensus 210 ~pvIl~GDFN~~p 222 (445)
..+|+||+|.+.|
T Consensus 65 ~~fVL~GnF~S~p 77 (291)
T PTZ00235 65 VGFIFMGDFISLK 77 (291)
T ss_pred eEEEEecCccCCc
Confidence 3489999999987
No 183
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.05 E-value=1.1e+02 Score=30.05 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=44.5
Q ss_pred chHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHH
Q 013328 302 LTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQ 367 (445)
Q Consensus 302 ~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 367 (445)
....++|..+-. -+ |+|+-..-+.-|..- .++..-+-++.+-.|.|.||.+|=+||.
T Consensus 444 ~~yde~fy~l~p-~~-gk~sg~~ak~~mv~s-------klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 444 PTYDEIFYTLSP-VN-GKLSGRNAKKEMVKS-------KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred cchHhhhhcccc-cC-ceeccchhHHHHHhc-------cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 345566766643 34 889888887777663 4778889999999999999999999995
No 184
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=20.27 E-value=2.2e+02 Score=18.94 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=29.9
Q ss_pred cchHHHhccccccCCCCCcccHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 013328 301 SLTETDAFAFLKADNDGDYITYSGFCEALEQLNLTGHKHGLADEETKDLWVQ 352 (445)
Q Consensus 301 ~~~~~~~F~~~D~~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~ 352 (445)
...|.+.|.. + .+++.++...+-..+| ++...|..+|..
T Consensus 12 ~~~L~~~f~~-----~-~~p~~~~~~~la~~l~-------l~~~~V~~WF~n 50 (57)
T PF00046_consen 12 LKVLEEYFQE-----N-PYPSKEEREELAKELG-------LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHH-----S-SSCHHHHHHHHHHHHT-------SSHHHHHHHHHH
T ss_pred HHHHHHHHHH-----h-cccccccccccccccc-------ccccccccCHHH
Confidence 3445666663 4 7899999999999988 788899888863
No 185
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.26 E-value=2.2e+02 Score=23.40 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCcEEEEeecccChhhHHHHHHHHhhccCc
Q 013328 64 QRILDWLLYERSSIICLQEFWVGNEELVDMYEKRLSDAGY 103 (445)
Q Consensus 64 ~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy 103 (445)
+.+++...+++||+|++-=+-.........+.+.|.+.|.
T Consensus 40 e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred HHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999988754443444455566665554
No 186
>PTZ00370 STEVOR; Provisional
Probab=20.05 E-value=1.3e+02 Score=28.28 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHhcCCCCceeeHHHHHHHHhc--cCccccccccCCccccccccccccccc
Q 013328 322 YSGFCEALEQLNLTGHKHGLADEETKDLWVQADIDGNGVVDYKEFQQRIWK--TTWSDQRNDLNDEDEDGFVKSSLEQTI 399 (445)
Q Consensus 322 ~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (445)
-.|+++++..+. ++.+++-.+..| .|+|+-+.|-. +.+..+.+++.-..++.+....-.+-+
T Consensus 56 DpemK~i~d~~n---------~eaikkyqqT~~-------~f~e~~e~~~k~~~K~k~~~d~e~k~klEKel~e~~ee~f 119 (296)
T PTZ00370 56 DPELKEIIDKMN---------EEAIKKYQQTHD-------PYEQLKEVVEKNGTKYTGGNDAEPMSTLEKELLETYEEMF 119 (296)
T ss_pred cHHHHHHHHHHh---------HHHhhhhhhhcc-------hHHHHHHHHHhcCCccccccCcchhHHHHHHHHHHHHHHh
Confidence 366777776654 444554444433 37787765633 334444444442222222222222223
Q ss_pred CeeeeccccCCcccccCCCCCCCCCCCCc
Q 013328 400 GFSVKNAVLFPPEVEKGRWPENYSLSDHA 428 (445)
Q Consensus 400 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (445)
|= .+. + -+++|++|.|+++||..
T Consensus 120 g~--~~~-i---mlksg~~~n~d~~~d~s 142 (296)
T PTZ00370 120 GD--ESD-I---MLKSGMYPNDDDKSDKS 142 (296)
T ss_pred cC--ccc-h---hhhcCCCCCccccccCC
Confidence 31 111 1 16789999999998553
Done!