BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013329
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana
GN=APRR1 PE=1 SV=1
Length = 618
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 256/536 (47%), Positives = 309/536 (57%), Gaps = 110/536 (20%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLV 60
MS QDEV VVVKCL+LGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKN+LSYDFDLV
Sbjct: 100 MSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLSYDFDLV 159
Query: 61 ASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETE----SVPV--------ATAT 108
SD SD NTNST LFSDDTDD+S RSTNP+ G +HQE E + PV A T
Sbjct: 160 GSDQSDPNTNSTNLFSDDTDDRSLRSTNPQRGNLSHQENEWSVATAPVHARDGGLGADGT 219
Query: 109 VVASTSGTAAVEPIDASECGPDVPGISDRRTGQFSAGPKKIELRIGESSAFFTYVKSNMP 168
+S + TA P+D P + QFS+ PKK L+IGESSAFFTYVKS +
Sbjct: 220 ATSSLAVTAIEPPLDHLAGSHHEPMKRNSNPAQFSSAPKKSRLKIGESSAFFTYVKSTVL 279
Query: 169 RDSS----------------------------------------------------PRIV 176
R + P +V
Sbjct: 280 RTNGQDPPLVDGNGSLHLHRGLAEKFQVVASEGINNTKQARRATPKSTVLRTNGQDPPLV 339
Query: 177 NVDDSAAQNVRMEEKCQPCCQQVVSDTRIHENGEAWENY-SQGEDFRSSSSVPDSLSMER 235
N + S + EK Q + +++T+ E Y SQGE ++ +S P SL ER
Sbjct: 340 NGNGSHHLHRGAAEKFQVVASEGINNTKQAHRSRGTEQYHSQGETLQNGASYPHSL--ER 397
Query: 236 SSTPPTDF-PQNRNFKDEKFFQPQMPPTRNE-----------PPQATYQYYMSGAMNQVM 283
S T PT RN+++ PQ+ R++ P A Y YYM G MNQVM
Sbjct: 398 SRTLPTSMESHGRNYQEGNMNIPQVAMNRSKDSSQVDGSGFSAPNA-YPYYMHGVMNQVM 456
Query: 284 LPSSSAQMYQKNLHELQNHSMLPQYNH-LPQCVP-HVNGMASFPYY--PIN-------MC 332
+ S+ +M+PQY H +P C P H NGM +PYY P+N M
Sbjct: 457 MQSA---------------AMMPQYGHQIPHCQPNHPNGMTGYPYYHHPMNTSLQHSQMS 501
Query: 333 LQPGQVSA--NSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRL 390
LQ GQ+S +SW GN PS EV++NK+DRRE AL+KFR+KR +RCFDKKIRYVNRKRL
Sbjct: 502 LQNGQMSMVHHSWSPAGNPPSNEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRL 561
Query: 391 AERRPRVRGQFVRKVNGVNVDLNGQPSSVDYDE--DEDEEEEMASRDSSPDNDTSG 444
AERRPRV+GQFVRK+NGVNVDLNGQP S DYD+ +E+EEEE +RDSSP +D G
Sbjct: 562 AERRPRVKGQFVRKMNGVNVDLNGQPDSADYDDEEEEEEEEEEENRDSSPQDDALG 617
>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp.
japonica GN=PRR1 PE=2 SV=2
Length = 518
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 175/436 (40%), Positives = 230/436 (52%), Gaps = 71/436 (16%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLV 60
MS +DEVSVVVKCLRLGAA+YLVKPLR NELLNLWTH+WRRRRMLGL+EKN + +F+L
Sbjct: 109 MSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRRRMLGLSEKNFFNDNFELA 168
Query: 61 ASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVP---------VATATVVA 111
S+PSDANTNSTTL SDDTDDK + + N E S E ES P +V+
Sbjct: 169 LSEPSDANTNSTTLLSDDTDDKPKENINQETSTSNQHEYESNPSDAEPKQKGTPEGLLVS 228
Query: 112 STSGTAAVEPIDASECGPDVPGISDRRTGQFSAGPKKIELRIGESSAFFTYVKSNMPRDS 171
+ G A P G + P K LR+ ESSAF YVKS+ P S
Sbjct: 229 TEGGDQASSP------------------GVMFSRPIKTNLRVAESSAFLAYVKSSTPTTS 270
Query: 172 SPRIVNVDDSAAQNVRMEEKCQPCCQQVVSDTRIHENGEAWENYSQGEDFRSSSSVPDS- 230
S D+ + + G ++ +F S++ D+
Sbjct: 271 S----------------------------FDSELQKGGNRLDSSDHRGNFSSTTDRSDTG 302
Query: 231 ----LSMERSSTPPTDFP----QNRNFKDEKFFQPQMPPTRNEPPQATYQYYMSGAMNQV 282
+ + + P +P + N E+ + Q + PP + +Y G M+
Sbjct: 303 TDVNIRDKEAFEMPVQYPVVCFSSSNLHLERSNEGQNDAS-GTPPVYHFPFYYPGMMDHG 361
Query: 283 MLPSSSAQMYQKNLHELQNH---SMLPQYNHLPQCVPHVNGMASFPYYPINMCLQPGQV- 338
M Q +Q N++ Q H ++LPQYN PQC V+ M F Y P M +Q Q+
Sbjct: 362 MT-HPPVQNFQGNINNAQVHTPQTLLPQYNVYPQC-HGVSMMPPFQYNPAGMSIQSNQLP 419
Query: 339 SANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVR 398
+ N WP ++P E ++ +RR AAL KFR KRKERCFDKK+RYVNRK+LAE RPRVR
Sbjct: 420 TQNMWPQASSTPMPEETCSRSERRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVR 479
Query: 399 GQFVRKVNGVNVDLNG 414
GQFVR+ N ++ G
Sbjct: 480 GQFVRQANYTDITSTG 495
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 357 NKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 405
NK+ +REAAL KFRQKRKERCF KK+RY +RK+LAE+RPRVRGQFVRK
Sbjct: 664 NKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKT 712
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
MS+ D + +V KCL GA D+LVKP+R NEL LW H+WRR
Sbjct: 159 MSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRR 199
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 361 RREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 406
+REAAL+KFR KRK+RCFDKK+RY +RK+LAE+RPRV+GQFVR VN
Sbjct: 416 QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVN 461
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
MS+QD + +V+KC+ GAADYL+KP+R NEL NLW H+WRR
Sbjct: 118 MSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRR 158
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 41/44 (93%)
Query: 361 RREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
+REAAL+KFR KRKERCF+KK+RY +RK+LAE+RP V+GQF+RK
Sbjct: 441 QREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
MS+ D + +V KCL GA D+LVKP+R NEL NLW H+WRR
Sbjct: 145 MSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWRR 185
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 45/53 (84%)
Query: 356 MNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGV 408
+ + +REAAL KFR KRK+RCF+KK+RY +RK LAE+RPRV+GQFVR+ +GV
Sbjct: 568 LRHLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQDHGV 620
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGL 47
MS+ D VS+V KC+ GAAD+LVKP+R NEL NLW H+WR++ G+
Sbjct: 124 MSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWRKQLSSGV 170
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 45/51 (88%)
Query: 355 KMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 405
K+ + +REAAL KFR KRK+RC++KK+RY +RK+LAE+RPR++GQFVR+V
Sbjct: 502 KIQQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQV 552
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 34/46 (73%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG 46
MS QD V+ V KC+ GAADYLVKPLR NEL NLW H+WRR+ L
Sbjct: 131 MSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWRRQTSLA 176
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 40/46 (86%)
Query: 360 DRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 405
+ R AA+IKFRQKRKER F KK+RY +RKRLAE+RPRVRGQFVR+
Sbjct: 680 EHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQA 725
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
MS+ D + V KCL GA D+LVKP+R NEL NLW H+WRR
Sbjct: 143 MSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 183
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 40/46 (86%)
Query: 360 DRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKV 405
+ R AA+IKFRQKRKER F KK+RY +RKRLAE+RPRVRGQFVR+
Sbjct: 680 EHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQA 725
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
MS+ D + V KCL GA D+LVKP+R NEL NLW H+WRR
Sbjct: 143 MSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 183
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 8/68 (11%)
Query: 357 NKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQP 416
N V REAAL KFRQKRK R F KK+RY +RKRLAE+RPR+RGQFVR+ +GQ
Sbjct: 707 NGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQ--------SGQE 758
Query: 417 SSVDYDED 424
DED
Sbjct: 759 DQAGQDED 766
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
MS+ D + V KCL GA D+LVKP+R NEL NLW H+WRR
Sbjct: 162 MSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 202
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 8/68 (11%)
Query: 357 NKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQP 416
N V REAAL KFRQKRK R F KK+RY +RKRLAE+RPR+RGQFVR+ +GQ
Sbjct: 707 NGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQ--------SGQE 758
Query: 417 SSVDYDED 424
DED
Sbjct: 759 DQAGQDED 766
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
MS+ D + V KCL GA D+LVKP+R NEL NLW H+WRR
Sbjct: 162 MSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 202
>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5
PE=2 SV=2
Length = 355
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDL 412
REA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ N D+
Sbjct: 285 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDI 335
>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4
PE=2 SV=2
Length = 362
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
Query: 336 GQVSANSWP-----SYGNSPSTE--VKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRK 388
G V+ S+P + G P T+ V + +R EA ++++R+KRK R F+K IRY +RK
Sbjct: 263 GSVADVSYPYGGPATSGADPGTQRAVPLTSAER-EARVMRYREKRKNRKFEKTIRYASRK 321
Query: 389 RLAERRPRVRGQFVRKVN 406
AE RPR++G+F ++ +
Sbjct: 322 AYAEMRPRIKGRFAKRTD 339
>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1
PE=1 SV=1
Length = 355
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
REA ++++R+K+K R F+K IRY +RK AE+RPR++G+F +K
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2
PE=1 SV=1
Length = 347
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
REA ++++R+K+K R FDK IRY +RK AE RPR++G+F ++
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 320
>sp|Q9LU68|CIA2_ARATH Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana
GN=CIA2 PE=2 SV=1
Length = 435
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 406
REA+++++++KR+ R F KKIRY RK A++RPR++G+FVR+ N
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPN 427
>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3
PE=1 SV=1
Length = 294
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 406
REA ++++R+KRK R F+K IRY +RK AE RPR++G+F ++ +
Sbjct: 229 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273
>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1
SV=1
Length = 373
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
REA ++++R+KRK R F+K IRY +RK AE RPRV G+F ++
Sbjct: 306 REARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43
MSA D SVV+K + GA DYL+KP+R L N+W H+ R+RR
Sbjct: 115 MSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRR 157
>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2
SV=1
Length = 302
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 359 VDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFV 402
+ +R A+L++FR+KRK R FDKKIRY RK +A R R +GQF
Sbjct: 144 IPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFT 187
>sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7
PE=2 SV=1
Length = 392
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 36/45 (80%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 406
REA ++++++KR+ R F KKIRY RK AE+RPR++G+FV++ +
Sbjct: 345 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTS 389
>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2
SV=1
Length = 395
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
REA ++++R+K+K R F+K IRY RK AE RPR++G+F ++
Sbjct: 326 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKR 368
>sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana
GN=COL16 PE=2 SV=2
Length = 417
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
REA + ++R+KR+ R F KKIRY RK AE+RPR++G+FV++
Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403
>sp|Q8LG76|COL6_ARATH Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6
PE=2 SV=2
Length = 406
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
REA + ++R+KR+ R F KKIRY RK AE+RPR++G+FV++
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43
MSA D SVV+K + GA DYL+KP+R L N+W H+ R++R
Sbjct: 106 MSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKR 148
>sp|Q9M9B3|COL8_ARATH Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8
PE=2 SV=2
Length = 319
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRK 404
REA + ++R KRK R F+KKIRY RK A++RPR++G+FVR+
Sbjct: 271 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 313
>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2
SV=2
Length = 297
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 359 VDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFV 402
V +R A+L++FR+KRK R FDK IRY RK +A R R +GQF
Sbjct: 140 VPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFT 183
>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana
GN=COL10 PE=1 SV=1
Length = 373
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVD 411
R A++++++K+K R FDK++RYV+RK A+ R RV+G+FV+ + D
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYD 365
>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9
PE=2 SV=1
Length = 372
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 35/50 (70%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVD 411
R A++++++K+K R FDK++RY +RK A+ R RV+G+FV+ + D
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364
>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2
SV=2
Length = 309
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 361 RREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFV 402
+R +L +FR+KR RCF+KK+RY R+ +A R R +GQF
Sbjct: 145 QRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFT 186
>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana
GN=COL13 PE=2 SV=1
Length = 332
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 328 PINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNR 387
P++ CL + P ++ S ++N ++R +AL ++++K+K R ++K IRY +R
Sbjct: 254 PVSGCLNRCEEETVMVPVITSTRSMTHEINSLER-NSALSRYKEKKKSRRYEKHIRYESR 312
Query: 388 KRLAERRPRVRGQFVRKVN 406
K AE R R+RG+F + +
Sbjct: 313 KVRAESRTRIRGRFAKAAD 331
>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana
GN=COL14 PE=2 SV=2
Length = 402
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVR 403
R+ A+ ++++K+K R +DK IRY RK AE R RV+G+FV+
Sbjct: 357 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398
>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana
GN=COL12 PE=2 SV=2
Length = 364
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVD 411
R A +++++K+ +R F K+IRY +RK A+ R RV+G+FV+ + + D
Sbjct: 307 RNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDSYDYD 356
>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana
GN=COL15 PE=2 SV=1
Length = 433
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVR 403
R A+ ++++KRK R +DK IRY +RK A+ R RVRG+FV+
Sbjct: 385 RGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVK 426
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42
+SA + V+K + GA DYL+KP+R EL N+W H+ R R
Sbjct: 95 LSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSR 136
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42
MS E S V+K ++ GA DYL+KP+R EL +W H+ R++
Sbjct: 89 MSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKK 130
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 40
+SA + V+K ++ GA DYL+KP+R EL N+W H+ R
Sbjct: 95 LSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVR 134
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42
MS + V+ + GA DYL+KP+R EL N+W H+ RR+
Sbjct: 90 MSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRK 131
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSY 55
+SA + V+K + GA DYLVKP+ EL N+W H + +KNI SY
Sbjct: 95 LSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHH---------VVKKNIKSY 140
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42
M++ + + V+K + GA D+L+KP+R EL N+W H++R++
Sbjct: 89 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQ 130
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42
M++ + + V+K + GA D+L+KP+R EL N+W H++R++
Sbjct: 89 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQ 130
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML 45
MS ++ V+K GA DY+VKP++ + N+W H+ R+R +
Sbjct: 112 MSDDNQTESVMKATFYGACDYVVKPVKEEVMANIWQHIVRKRLIF 156
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42
MS + + V++ ++ GA D+LVKP+ + LW H++R+R
Sbjct: 117 MSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKR 158
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 7 VSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 38
++ +KC+ LGA ++L KPL +L N+W H+
Sbjct: 107 ITTTMKCIALGAVEFLQKPLSPEKLKNIWQHV 138
>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis
thaliana GN=COL11 PE=3 SV=2
Length = 330
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 347 GNSP---STEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVR 403
G+SP + EV N R EA +QK+ +R F K+IRY +RK A+ R RV+G+FV+
Sbjct: 259 GDSPWESNVEVSFNPKLRDEAKKRY-KQKKSKRMFGKQIRYASRKARADTRKRVKGRFVK 317
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR-----MLGLAEK 50
+S D V V K + GAADYL+KP+R +L ++ H+ ++ R + G AEK
Sbjct: 120 ISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVKKMRERRSVVTGEAEK 174
>sp|Q1GP75|PDRP_SPHAL Putative pyruvate, phosphate dikinase regulatory protein
OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877
/ RB2256) GN=Sala_2842 PE=3 SV=1
Length = 270
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 178 VDDSAAQNVRMEEKCQPCCQQV-----------VSDTRIHENGEAWENYSQGEDFRSSSS 226
V D+ ++ + E K +P Q V + T H++G WEN+ Q + + S
Sbjct: 92 VTDALSRMLGQEAKARPGRQHVLDAAYFARVEAIQFTVAHDDGIGWENWEQADIILAGVS 151
Query: 227 VPDSLSMERSSTPPTDFPQNRNFKDEKF-FQPQMPP 261
S TP + + NR FK P+ PP
Sbjct: 152 -------RTSKTPTSIYLANRGFKTANIPIVPESPP 180
>sp|Q02540|COPR_PSEUB Transcriptional activator protein CopR OS=Pseudomonas syringae pv.
tomato GN=copR PE=1 SV=1
Length = 227
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41
++A+D V VK L LGA DYLVKP +ELL + RR
Sbjct: 78 LTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118
>sp|Q49VK3|GRAR_STAS1 Response regulator protein GraR OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=graR PE=3 SV=1
Length = 224
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 11 VKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSY 55
V + LGA DY+ KP TN L+ ++RR L EK +LS+
Sbjct: 87 VMSMELGADDYVQKPFNTNVLIAKLQAIYRRVYQFSLDEKRVLSW 131
>sp|Q8CQ37|GRAR_STAES Response regulator protein GraR OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=graR PE=3 SV=1
Length = 224
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 11 VKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSY 55
V + LGA DY+ KP TN L+ ++RR G+ EK LS+
Sbjct: 87 VMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGVEEKRTLSW 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,320,672
Number of Sequences: 539616
Number of extensions: 7169947
Number of successful extensions: 25772
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 25538
Number of HSP's gapped (non-prelim): 279
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)