Query 013329
Match_columns 445
No_of_seqs 371 out of 2125
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:44:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06203 CCT: CCT motif; Inte 99.7 1.3E-18 2.8E-23 129.8 2.9 45 362-406 1-45 (45)
2 COG0745 OmpR Response regulato 99.2 1.7E-11 3.8E-16 117.9 5.4 101 1-102 78-182 (229)
3 COG3706 PleD Response regulato 99.1 6.5E-11 1.4E-15 124.0 5.0 108 1-114 212-339 (435)
4 PRK09836 DNA-binding transcrip 98.3 1.1E-06 2.4E-11 80.0 5.9 98 2-102 79-179 (227)
5 PRK10766 DNA-binding transcrip 98.3 1E-06 2.2E-11 79.6 5.5 100 2-102 80-188 (221)
6 PRK11173 two-component respons 98.2 1.8E-06 3.9E-11 79.6 6.3 100 2-102 81-189 (237)
7 PRK09468 ompR osmolarity respo 98.2 1.5E-06 3.2E-11 79.9 5.6 100 2-102 84-190 (239)
8 PRK10529 DNA-binding transcrip 98.2 2.6E-06 5.7E-11 77.2 5.9 99 2-102 79-180 (225)
9 PRK10701 DNA-binding transcrip 98.2 3.2E-06 7E-11 77.9 6.2 100 2-102 79-190 (240)
10 PRK10816 DNA-binding transcrip 98.2 2.8E-06 6E-11 77.1 5.6 97 2-102 79-178 (223)
11 PRK13856 two-component respons 98.1 4.7E-06 1E-10 77.5 6.4 96 6-102 84-184 (241)
12 TIGR03787 marine_sort_RR prote 98.0 1.3E-05 2.8E-10 72.8 6.3 100 1-101 80-184 (227)
13 PRK10161 transcriptional regul 98.0 1.4E-05 3E-10 72.9 6.3 98 2-102 83-183 (229)
14 PRK11517 transcriptional regul 97.9 1.4E-05 3.1E-10 71.9 5.8 96 2-102 78-176 (223)
15 TIGR01387 cztR_silR_copR heavy 97.8 2.9E-05 6.3E-10 69.3 5.4 97 2-102 77-176 (218)
16 CHL00148 orf27 Ycf27; Reviewed 97.8 5.3E-05 1.1E-09 69.0 6.2 100 2-102 84-190 (240)
17 PRK10955 DNA-binding transcrip 97.7 7E-05 1.5E-09 67.9 5.5 100 2-102 78-185 (232)
18 PRK11083 DNA-binding response 97.6 7.3E-05 1.6E-09 67.2 5.2 99 2-102 82-183 (228)
19 TIGR02154 PhoB phosphate regul 97.6 8.6E-05 1.9E-09 66.5 5.6 98 2-102 83-183 (226)
20 PRK09581 pleD response regulat 97.6 7.5E-05 1.6E-09 74.5 5.2 109 1-115 234-362 (457)
21 PRK10643 DNA-binding transcrip 97.5 0.00018 4E-09 64.3 6.3 96 2-101 79-177 (222)
22 PRK10336 DNA-binding transcrip 97.5 0.00017 3.7E-09 64.5 5.9 97 2-102 79-178 (219)
23 PRK15479 transcriptional regul 97.4 0.00032 6.9E-09 62.8 6.3 97 2-102 79-177 (221)
24 PRK10710 DNA-binding transcrip 97.1 0.0008 1.7E-08 61.3 5.7 99 2-102 88-189 (240)
25 COG2199 c-di-GMP synthetase (d 96.9 0.00055 1.2E-08 61.5 2.9 69 43-117 24-92 (181)
26 COG4565 CitB Response regulato 96.7 0.0017 3.8E-08 63.4 4.2 101 1-102 80-183 (224)
27 COG4566 TtrR Response regulato 96.6 0.0017 3.7E-08 62.6 3.1 42 1-42 82-123 (202)
28 COG2204 AtoC Response regulato 96.4 0.0039 8.4E-08 66.8 5.4 44 1-44 82-125 (464)
29 PRK15426 putative diguanylate 96.0 0.0036 7.8E-08 66.0 2.5 67 44-116 403-469 (570)
30 KOG1601 GATA-4/5/6 transcripti 95.0 0.0097 2.1E-07 55.0 1.2 41 359-399 290-330 (340)
31 PRK10245 adrA diguanylate cycl 94.9 0.015 3.2E-07 59.7 2.2 68 43-116 209-276 (366)
32 COG3437 Response regulator con 94.7 0.022 4.8E-07 59.3 3.1 43 1-43 95-137 (360)
33 PRK11059 regulatory protein Cs 94.7 0.019 4.1E-07 62.6 2.5 67 43-115 232-298 (640)
34 PRK10046 dpiA two-component re 94.6 0.064 1.4E-06 50.3 5.5 43 1-43 84-126 (225)
35 TIGR02915 PEP_resp_reg putativ 94.1 0.067 1.5E-06 55.2 5.0 42 1-42 79-120 (445)
36 PF09425 CCT_2: Divergent CCT 93.8 0.036 7.8E-07 37.9 1.5 24 361-385 3-26 (27)
37 PRK10360 DNA-binding transcrip 93.8 0.11 2.3E-06 46.0 4.9 40 2-41 79-118 (196)
38 PRK09958 DNA-binding transcrip 93.7 0.11 2.4E-06 46.2 4.9 40 2-41 80-119 (204)
39 PRK10693 response regulator of 93.7 0.1 2.2E-06 52.1 5.2 41 1-41 51-92 (303)
40 PRK10430 DNA-binding transcrip 93.3 0.16 3.4E-06 48.0 5.6 42 1-42 83-124 (239)
41 PRK10610 chemotaxis regulatory 93.3 0.2 4.4E-06 39.2 5.3 38 4-41 89-126 (129)
42 PRK09935 transcriptional regul 93.0 0.15 3.2E-06 45.3 4.6 91 2-102 84-174 (210)
43 COG4567 Response regulator con 93.0 0.065 1.4E-06 50.7 2.3 37 1-37 87-123 (182)
44 PRK13561 putative diguanylate 92.9 0.084 1.8E-06 57.2 3.5 64 43-116 235-298 (651)
45 PRK10840 transcriptional regul 92.9 0.17 3.6E-06 46.8 4.9 40 2-41 87-126 (216)
46 PRK11829 biofilm formation reg 92.8 0.088 1.9E-06 57.0 3.4 67 43-116 236-302 (660)
47 TIGR02875 spore_0_A sporulatio 92.4 0.2 4.3E-06 47.7 4.9 41 1-41 84-124 (262)
48 PRK09894 diguanylate cyclase; 92.3 0.16 3.5E-06 48.8 4.2 65 44-116 134-198 (296)
49 PLN03029 type-a response regul 92.2 0.23 5E-06 47.4 5.0 40 2-41 109-148 (222)
50 PRK09581 pleD response regulat 91.9 0.3 6.6E-06 48.9 5.7 41 2-42 83-123 (457)
51 PRK09776 putative diguanylate 91.8 0.085 1.8E-06 59.8 1.9 68 43-116 669-736 (1092)
52 COG4753 Response regulator con 91.6 0.2 4.2E-06 54.2 4.3 42 1-42 82-123 (475)
53 PRK09966 putative inner membra 91.4 0.22 4.8E-06 50.4 4.2 64 44-114 253-316 (407)
54 PRK11475 DNA-binding transcrip 91.0 0.33 7.2E-06 46.4 4.7 42 1-42 74-116 (207)
55 PRK09483 response regulator; P 90.9 0.43 9.2E-06 42.9 5.2 40 2-41 82-121 (217)
56 PRK11361 acetoacetate metaboli 90.0 0.32 7E-06 50.2 4.0 42 1-42 82-123 (457)
57 COG2197 CitB Response regulato 90.0 0.51 1.1E-05 45.1 5.0 42 1-42 80-121 (211)
58 COG0784 CheY FOG: CheY-like re 90.0 0.57 1.2E-05 38.8 4.8 40 2-41 86-126 (130)
59 PRK10403 transcriptional regul 89.9 0.57 1.2E-05 41.3 5.0 40 2-41 87-126 (215)
60 PRK15369 two component system 89.9 0.56 1.2E-05 40.8 4.9 40 2-41 84-123 (211)
61 PRK10060 RNase II stability mo 89.8 0.28 6.2E-06 54.0 3.7 67 42-116 240-306 (663)
62 PRK10923 glnG nitrogen regulat 89.3 0.6 1.3E-05 48.7 5.4 42 1-42 81-122 (469)
63 PRK10651 transcriptional regul 89.3 0.71 1.5E-05 40.8 5.1 40 2-41 87-126 (216)
64 PRK15115 response regulator Gl 88.2 0.49 1.1E-05 48.9 3.8 42 1-42 83-124 (444)
65 PRK11107 hybrid sensory histid 88.2 0.55 1.2E-05 52.2 4.5 41 1-41 747-787 (919)
66 PRK11359 cyclic-di-GMP phospho 88.2 0.36 7.9E-06 52.8 3.0 64 43-116 380-443 (799)
67 PRK15347 two component system 88.1 0.73 1.6E-05 51.4 5.3 41 1-41 772-812 (921)
68 PF00990 GGDEF: GGDEF domain; 87.9 0.17 3.6E-06 42.8 0.2 67 44-116 6-72 (161)
69 TIGR01818 ntrC nitrogen regula 87.4 0.82 1.8E-05 47.4 4.9 42 1-42 76-117 (463)
70 COG3707 AmiR Response regulato 86.6 0.95 2.1E-05 43.9 4.5 42 1-42 83-124 (194)
71 PRK13435 response regulator; P 86.1 1.1 2.3E-05 38.4 4.1 33 11-43 91-123 (145)
72 PRK11697 putative two-componen 86.0 1.5 3.3E-05 40.5 5.5 34 8-41 85-118 (238)
73 PRK14084 two-component respons 85.8 1.5 3.4E-05 40.9 5.4 35 8-42 85-119 (246)
74 PRK09390 fixJ response regulat 85.7 0.68 1.5E-05 40.1 2.8 41 2-42 82-122 (202)
75 PRK10365 transcriptional regul 85.7 0.67 1.5E-05 47.6 3.2 42 1-42 83-124 (441)
76 TIGR02956 TMAO_torS TMAO reduc 85.2 1.2 2.5E-05 50.3 5.0 41 1-41 783-823 (968)
77 PRK11466 hybrid sensory histid 83.8 1.3 2.8E-05 49.7 4.6 41 1-41 760-800 (914)
78 PRK09959 hybrid sensory histid 83.1 1.6 3.5E-05 50.7 5.1 41 1-41 1036-1076(1197)
79 cd00156 REC Signal receiver do 82.2 1.1 2.4E-05 32.9 2.3 33 6-38 80-112 (113)
80 PRK07239 bifunctional uroporph 81.2 2.3 4.9E-05 43.8 4.9 87 9-102 246-335 (381)
81 COG5001 Predicted signal trans 81.1 0.74 1.6E-05 49.7 1.3 54 44-98 233-286 (663)
82 cd01949 GGDEF Diguanylate-cycl 77.2 1.3 2.9E-05 36.7 1.5 67 44-116 5-71 (158)
83 smart00267 GGDEF diguanylate c 76.4 1.5 3.3E-05 36.5 1.7 67 44-116 8-74 (163)
84 TIGR00254 GGDEF diguanylate cy 76.2 1.2 2.6E-05 37.8 1.0 66 44-115 7-72 (165)
85 PRK12555 chemotaxis-specific m 75.9 3.6 7.8E-05 41.4 4.4 33 7-39 87-128 (337)
86 PRK11091 aerobic respiration c 74.1 4.2 9.2E-05 45.1 4.8 34 8-41 612-645 (779)
87 COG3947 Response regulator con 73.4 2.8 6.1E-05 43.6 2.9 89 11-101 86-175 (361)
88 TIGR03815 CpaE_hom_Actino heli 72.5 4.7 0.0001 40.4 4.3 36 4-39 51-86 (322)
89 PRK00742 chemotaxis-specific m 64.5 11 0.00023 38.3 4.9 21 7-27 90-110 (354)
90 PRK10100 DNA-binding transcrip 60.2 13 0.00028 35.7 4.5 32 10-41 94-127 (216)
91 PRK13558 bacterio-opsin activa 58.9 11 0.00024 41.0 4.2 41 1-41 85-127 (665)
92 cd07556 Nucleotidyl_cyc_III Cl 49.1 13 0.00028 30.6 2.2 40 72-116 2-41 (133)
93 PRK12704 phosphodiesterase; Pr 42.2 20 0.00042 39.5 2.8 41 2-42 256-298 (520)
94 cd00383 trans_reg_C Effector d 37.7 18 0.00039 29.1 1.3 34 69-102 19-52 (95)
95 PF00486 Trans_reg_C: Transcri 35.2 11 0.00023 29.4 -0.4 32 71-102 3-34 (77)
96 KOG4571 Activating transcripti 33.7 54 0.0012 33.9 4.2 18 358-375 231-248 (294)
97 smart00862 Trans_reg_C Transcr 31.7 25 0.00055 27.1 1.2 32 71-102 3-34 (78)
98 PHA03237 envelope glycoprotein 30.6 38 0.00083 36.6 2.7 35 361-395 345-381 (424)
99 smart00521 CBF CCAAT-Binding t 27.5 82 0.0018 25.7 3.4 25 379-403 36-61 (62)
100 PRK10153 DNA-binding transcrip 24.1 37 0.0008 37.2 1.2 35 68-102 23-57 (517)
101 KOG2023 Nuclear transport rece 23.2 30 0.00066 39.7 0.4 10 277-286 196-205 (885)
102 PLN03078 Putative tRNA pseudou 22.2 80 0.0017 35.1 3.3 40 366-407 229-268 (513)
103 COG2201 CheB Chemotaxis respon 22.2 1.3E+02 0.0028 31.9 4.6 21 7-27 88-108 (350)
104 PRK11107 hybrid sensory histid 20.3 1.2E+02 0.0026 34.1 4.2 35 5-39 616-650 (919)
No 1
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.73 E-value=1.3e-18 Score=129.81 Aligned_cols=45 Identities=56% Similarity=0.995 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcccCCCcccchhhhhhhhhhCCCCCcceecccC
Q 013329 362 REAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVN 406 (445)
Q Consensus 362 R~~~~~ry~eKr~~R~f~kkirY~~RK~~A~~RpRvkGrFvk~~~ 406 (445)
|+++|+||++||++|+|+|+|+|+|||.+|+.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 678999999999999999999999999999999999999999753
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.19 E-value=1.7e-11 Score=117.94 Aligned_cols=101 Identities=27% Similarity=0.319 Sum_probs=80.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhh-hCccccccccccchhhccccccC---CCCeEEEEe
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM-LGLAEKNILSYDFDLVASDPSDA---NTNSTTLFS 76 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rL-Tgl~nr~iL~~gLdl~Ld~asr~---n~~slaLL~ 76 (445)
||+.++..+.+.++++||||||+|||++.||++||+++++|... +.......+..+ ++.++...+. ++..+.|+.
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~~~~~~~~~~~~~g-~l~id~~~~~v~~~~~~i~Lt~ 156 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFG-DLTLDPDTRTVTLNGRELTLTP 156 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcCcccccccceeEEC-CEEEEcCcCEEEECCEEecCCh
Confidence 58899999999999999999999999999999999999998642 111122344444 4555543332 345778889
Q ss_pred ecccchhhhhcCCCcccChHHHHhhc
Q 013329 77 DDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 77 lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+++.+..+..|+++++|++++++.+
T Consensus 157 ~Ef~lL~~L~~~~g~v~sR~~L~~~v 182 (229)
T COG0745 157 KEFELLELLARHPGRVLSREQLLEAV 182 (229)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHh
Confidence 99999999999999999999999986
No 3
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.09 E-value=6.5e-11 Score=124.01 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=92.6
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh--------------------hhCccccccccccchhh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR--------------------MLGLAEKNILSYDFDLV 60 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r--------------------LTgl~nr~iL~~gLdl~ 60 (445)
+++.++......|++.|++|||+||+...+|.+||+..+++.+ +||+.|++.|...+...
T Consensus 212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~~~L~~~~~~~~~l~~~D~LTGL~NRR~~~~~L~~~ 291 (435)
T COG3706 212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYERQLRESLERLQELALVDGLTGLFNRRYFDEHLADL 291 (435)
T ss_pred EecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCcccHHHHHHHHHHH
Confidence 3667788899999999999999999999999999999998653 36677777777767777
Q ss_pred ccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhccc
Q 013329 61 ASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTS 114 (445)
Q Consensus 61 Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~ 114 (445)
+.++.+. +.+++++++|+|+||.+|+++||. .+|.||+.||..|..+.
T Consensus 292 ~~ra~~~-~~pls~~m~DID~FK~iNDt~GH~-----~GDevLr~vA~~L~~~v 339 (435)
T COG3706 292 WKRALRE-GRPLSLLMLDIDDFKEINDTYGHD-----VGDEVLRQVARRLRQTV 339 (435)
T ss_pred HHHHHhc-CCCeeEEEEecccccccccccCCc-----cHHHHHHHHHHHHHhhc
Confidence 7776665 458999999999999999999655 89999999999999988
No 4
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=98.29 E-value=1.1e-06 Score=79.95 Aligned_cols=98 Identities=26% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+.+....++++||++||.||++..+|.++|+.++++.. .......+..+ ++.++...+ .++..+.|+..+
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Lt~~E 155 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA--AVIIESQFQVA-DLMVDLVSRKVTRSGTRITLTSKE 155 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhccc--ccCCCCcEEEc-CEEEEcccCEEEECCEEEecCHHH
Confidence 556777888899999999999999999999999999887632 11111122222 223332211 233467899999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+..+..|+++++|++++++.+
T Consensus 156 ~~ll~~l~~~~g~~~sr~~l~~~~ 179 (227)
T PRK09836 156 FTLLEFFLRHQGEVLPRSLIASQV 179 (227)
T ss_pred HHHHHHHHhCCCeeEcHHHHHHHH
Confidence 999999999999999999999986
No 5
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=98.28 E-value=1e-06 Score=79.62 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCcc------ccccccccchhhcccccc---CCCCeE
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLA------EKNILSYDFDLVASDPSD---ANTNST 72 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~------nr~iL~~gLdl~Ld~asr---~n~~sl 72 (445)
++..+......++++||+|||.||++..+|..+|+.++++....... ....+..+ +..++...+ .++..+
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v 158 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRISLARQAQPHAQEEDNCYRFA-GYCLNVSRRTLERNGEPI 158 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhcccccccccccCCCCceEEC-CEEEEcccCEEEECCEEe
Confidence 45667777889999999999999999999999999998774321100 01122222 223332222 234577
Q ss_pred EEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 73 TLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 73 aLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.|+..+++.+..+..|+++++|++++++.+
T Consensus 159 ~Lt~~E~~ll~~l~~~~~~v~sr~~l~~~v 188 (221)
T PRK10766 159 KLTKAEYELLVAFVTNPGQVLSRERLLRML 188 (221)
T ss_pred cCCHHHHHHHHHHHHCCCceEcHHHHHHHh
Confidence 899999999999999999999999999986
No 6
>PRK11173 two-component response regulator; Provisional
Probab=98.24 E-value=1.8e-06 Score=79.63 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhC--cc---ccccccccchhhcccccc----CCCCeE
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG--LA---EKNILSYDFDLVASDPSD----ANTNST 72 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTg--l~---nr~iL~~gLdl~Ld~asr----~n~~sl 72 (445)
|+..+......+++.||++||.||++..+|..+|++++++..... .. ....+..+ +..++...+ .++..+
T Consensus 81 t~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 159 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFN-GWELDINSRSLISPDGEQY 159 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhccccccccccccccccceEEC-CEEEecccceEEecCCeEE
Confidence 556677778889999999999999999999999999998743111 00 01122223 333433222 244578
Q ss_pred EEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 73 TLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 73 aLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.|+..+++.+..+..|+|+++|++++.+.+
T Consensus 160 ~Lt~~E~~ll~~l~~~~g~v~sr~~l~~~v 189 (237)
T PRK11173 160 KLPRSEFRAMLHFCENPGKIQSRAELLKKM 189 (237)
T ss_pred eCCHHHHHHHHHHHhCCCccCcHHHHHHHh
Confidence 899999999999999999999999999985
No 7
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=98.24 E-value=1.5e-06 Score=79.89 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=73.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhh--Cc--cccccccccchhhcccccc---CCCCeEEE
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRML--GL--AEKNILSYDFDLVASDPSD---ANTNSTTL 74 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLT--gl--~nr~iL~~gLdl~Ld~asr---~n~~slaL 74 (445)
++..+......++++|+++||.||++..+|.++|+.++++.... .. .....+..+ +..++...+ .++..+.|
T Consensus 84 s~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~L 162 (239)
T PRK09468 84 TAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQAPELPGAPSQEEEVIAFG-KFKLNLGTRELFRGDEPMPL 162 (239)
T ss_pred ECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccccccccccccCCCceEEEC-cEEEEcCcCEEEECCEEeec
Confidence 45566777888999999999999999999999999988764210 00 011122222 333333222 23457889
Q ss_pred EeecccchhhhhcCCCcccChHHHHhhc
Q 013329 75 FSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 75 L~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+..+++.|.++..|+++++|+++|++.+
T Consensus 163 t~~E~~lL~~L~~~~~~~~sr~~l~~~v 190 (239)
T PRK09468 163 TTGEFAVLKALVSHPREPLSRDKLMNLA 190 (239)
T ss_pred CHHHHHHHHHHHhCCCccCcHHHHHHHH
Confidence 9999999999999999999999999985
No 8
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=98.18 E-value=2.6e-06 Score=77.16 Aligned_cols=99 Identities=21% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++...... ....+..+ +..++...+ .++..+.|...+
T Consensus 79 t~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~v~~~~~~~~Lt~~E 156 (225)
T PRK10529 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATPA-PDPLVKFS-DVTVDLAARVIHRGEEEVHLTPIE 156 (225)
T ss_pred ECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccC-CCcceeEC-CEEEEcccCEEEECCEEEECCHHH
Confidence 5666777888999999999999999999999999998876431110 11112222 222222221 234467889999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+..+..|+++++|++++++.+
T Consensus 157 ~~ll~~L~~~~~~~~s~~~l~~~v 180 (225)
T PRK10529 157 FRLLAVLLNNAGKVLTQRQLLNQV 180 (225)
T ss_pred HHHHHHHHhCCCeeEcHHHHHHHh
Confidence 999999999999999999999986
No 9
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=98.17 E-value=3.2e-06 Score=77.90 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=72.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCcc---------ccccccccchhhcccccc---CCC
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLA---------EKNILSYDFDLVASDPSD---ANT 69 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~---------nr~iL~~gLdl~Ld~asr---~n~ 69 (445)
++..+......++++|+++||.||++..+|..+|+.++++....... ....+..+ .+.++...+ .++
T Consensus 79 ~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (240)
T PRK10701 79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATQTKGLQETSLTPYKALHFG-TLTIDPVNRQVTLAG 157 (240)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhccccccccccccccccccccceEec-CEEEEcccCEEEECC
Confidence 44556667788999999999999999999999999988764311000 01112222 233333222 244
Q ss_pred CeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 70 NSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 70 ~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
..+.|+..+++.+..+..|+++++|++++.+.+
T Consensus 158 ~~i~Lt~~E~~lL~~l~~~~~~v~sr~~l~~~v 190 (240)
T PRK10701 158 EEISLSTADFDLLWELATHAGQIMDRDALLKNL 190 (240)
T ss_pred eEeecCHHHHHHHHHHHhCCCccCcHHHHHHHh
Confidence 578899999999999999999999999999986
No 10
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=98.16 E-value=2.8e-06 Score=77.14 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|.++|+.++++.. .. ....+..+ +..++...+ .++..+.|+..+
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~~--~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~Lt~~E 154 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS--GL-ASQVISLP-PFQVDLSRRELSINDEVIKLTAFE 154 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhccc--cC-CCCeEEEC-CEEEEcccCEEEECCEEEeCCHHH
Confidence 556677788899999999999999999999999999887642 11 11122222 222222111 134477899999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+..+..|+++++|++++.+.+
T Consensus 155 ~~ll~~L~~~~~~vvs~~~l~~~~ 178 (223)
T PRK10816 155 YTIMETLIRNNGKVVSKDSLMLQL 178 (223)
T ss_pred HHHHHHHHhCCCeeEcHHHHHHHh
Confidence 999999999999999999999875
No 11
>PRK13856 two-component response regulator VirG; Provisional
Probab=98.13 E-value=4.7e-06 Score=77.45 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=69.9
Q ss_pred cHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhC-ccccccccccchhhcccccc----CCCCeEEEEeeccc
Q 013329 6 EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG-LAEKNILSYDFDLVASDPSD----ANTNSTTLFSDDTD 80 (445)
Q Consensus 6 d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTg-l~nr~iL~~gLdl~Ld~asr----~n~~slaLL~lDLD 80 (445)
+......++++||++||.||++..+|.++|+.++++..... ......+..+ ++.++...+ ..+..+.|+..+++
T Consensus 84 ~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Lt~~E~~ 162 (241)
T PRK13856 84 EEADKVVALELGATDFIAKPFGTREFLARIRVALRVRPNVVRTKDRRSFCFA-DWTLNLRQRRLISEAGGEVKLTAGEFN 162 (241)
T ss_pred cHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhcccccccccccceecC-ceEEehhhCEEEeCCCcEeecCHHHHH
Confidence 45567789999999999999999999999999887643111 1111222222 333332221 23457889999999
Q ss_pred chhhhhcCCCcccChHHHHhhc
Q 013329 81 DKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 81 ~FKlINdn~g~vvSreQl~d~~ 102 (445)
.|..+..++++++|++++++.+
T Consensus 163 lL~~l~~~~~~v~sr~~l~~~~ 184 (241)
T PRK13856 163 LLVAFLEKPRDVLSREQLLIAS 184 (241)
T ss_pred HHHHHHhCCCCccCHHHHHHHh
Confidence 9999999999999999999875
No 12
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=97.98 E-value=1.3e-05 Score=72.76 Aligned_cols=100 Identities=23% Similarity=0.242 Sum_probs=70.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhC--ccccccccccchhhcccccc---CCCCeEEEE
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG--LAEKNILSYDFDLVASDPSD---ANTNSTTLF 75 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTg--l~nr~iL~~gLdl~Ld~asr---~n~~slaLL 75 (445)
+|+..+......++++||++||.||++..+|..+|+.++++..... ......+..+ .+.++.... .++..+.|+
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt 158 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRAEALQKPQKQDDLITRG-PLTLDSDRMTVFWQDQPIDLT 158 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhhccccccccceEEEC-CEEEEcccCEEEECCEEecCC
Confidence 3566777788899999999999999999999999999987653111 0111122211 122221111 123356799
Q ss_pred eecccchhhhhcCCCcccChHHHHhh
Q 013329 76 SDDTDDKSRRSTNPEIGMSTHQETES 101 (445)
Q Consensus 76 ~lDLD~FKlINdn~g~vvSreQl~d~ 101 (445)
..+++.+.++..|+|+++|++++.+.
T Consensus 159 ~~E~~il~~l~~~~g~v~s~~~i~~~ 184 (227)
T TIGR03787 159 VTEFWMVHALAKHPGHVKSRQQLMDA 184 (227)
T ss_pred HHHHHHHHHHHhCCCccccHHHHHHH
Confidence 99999999999999999999999776
No 13
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=97.97 E-value=1.4e-05 Score=72.88 Aligned_cols=98 Identities=24% Similarity=0.259 Sum_probs=70.1
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++.. .......+..+ ...++.... .++....|...+
T Consensus 83 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~E 159 (229)
T PRK10161 83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS--PMAVEEVIEMQ-GLSLDPTSHRVMAGEEPLEMGPTE 159 (229)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhccc--ccCcCceeEEC-CEEEEcCcCEEEECCEEEEcCHHH
Confidence 456677788899999999999999999999999999887632 11111122211 222222111 123356788899
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+.++..|+++++|++++.+.+
T Consensus 160 ~~ll~~l~~~~~~~~s~~~l~~~~ 183 (229)
T PRK10161 160 FKLLHFFMTHPERVYSREQLLNHV 183 (229)
T ss_pred HHHHHHHHhCCCceEcHHHHHHHh
Confidence 999999999999999999998874
No 14
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=97.94 E-value=1.4e-05 Score=71.88 Aligned_cols=96 Identities=25% Similarity=0.241 Sum_probs=70.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++... . ...+..+ ...++...+ .++..+.|+..+
T Consensus 78 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~E 152 (223)
T PRK11517 78 TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA--L--NSTLEIS-GLRMDSVSQSVSRDNISITLTRKE 152 (223)
T ss_pred ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccccC--c--CCeEEEC-CEEEEcCCCEEEECCEEEeCCHHH
Confidence 4566777888999999999999999999999999988865421 1 1112111 122221111 233467899999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+..+..++++++|++++.+.+
T Consensus 153 ~~il~~l~~~~g~~~s~~~i~~~~ 176 (223)
T PRK11517 153 FQLLWLLASRAGEIIPRTVIASEI 176 (223)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHh
Confidence 999999999999999999999985
No 15
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=97.81 E-value=2.9e-05 Score=69.28 Aligned_cols=97 Identities=28% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++... . ....+..+ +..++...+ ..+..+.|+..+
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~E 152 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHS--L-NSTVLEIA-DLRMDSVRHRVSRGNIRITLTRKE 152 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccccc--C-CCCeEEEC-CEEEEcccCEEEECCEEEeCCHHH
Confidence 4566777788899999999999999999999999998876431 1 11111111 222221111 133456789999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+..+..++++++|++++.+.+
T Consensus 153 ~~il~~l~~~~~~~~sr~~i~~~~ 176 (218)
T TIGR01387 153 FQLLWLLMRRTGEVLPRTVIASLV 176 (218)
T ss_pred HHHHHHHHhCCCeeEcHHHHHHHh
Confidence 999999999999999999999985
No 16
>CHL00148 orf27 Ycf27; Reviewed
Probab=97.75 E-value=5.3e-05 Score=69.01 Aligned_cols=100 Identities=22% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhC----ccccccccccchhhcccccc---CCCCeEEE
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLG----LAEKNILSYDFDLVASDPSD---ANTNSTTL 74 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTg----l~nr~iL~~gLdl~Ld~asr---~n~~slaL 74 (445)
|+..+......++++||++||.||++..+|..+|+.++++..... ......+..+ ...++.... .++....|
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L 162 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRTNKKSFSSKIPNSSIIRIG-FLKIDLNKKQVYKNNERIRL 162 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhccccccccccCCCceEEEC-CEEEEcCCCEEEECCEEEEc
Confidence 556677777899999999999999999999999999887643110 0011111111 112211111 12335678
Q ss_pred EeecccchhhhhcCCCcccChHHHHhhc
Q 013329 75 FSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 75 L~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+..+++.++++..+++.++|++++.+..
T Consensus 163 t~~E~~il~~l~~~~~~~~s~~~i~~~l 190 (240)
T CHL00148 163 TGMEFSLLELLISKSGEIFSRATILKEV 190 (240)
T ss_pred CHHHHHHHHHHHHCCCEEEcHHHHHHHh
Confidence 8899999999999999999999999875
No 17
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=97.66 E-value=7e-05 Score=67.86 Aligned_cols=100 Identities=21% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCcc-----ccccccccchhhcccccc---CCCCeEE
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLA-----EKNILSYDFDLVASDPSD---ANTNSTT 73 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~-----nr~iL~~gLdl~Ld~asr---~n~~sla 73 (445)
|+..+......++++|+++||.||++..+|..+|+.++++....... ....+..+ ...++...+ .++....
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (232)
T PRK10955 78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVD-ALSLNPGRQEASFDGQTLE 156 (232)
T ss_pred ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccccccccccccCCCceEEEC-CEEEecCCCEEEECCEEec
Confidence 55666777788999999999999999999999999988764321100 00111111 112221111 1223456
Q ss_pred EEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 74 LFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 74 LL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
|+..+++.+.++..+++.++|++++.+..
T Consensus 157 Lt~~E~~~l~~l~~~~~~v~sr~~l~~~~ 185 (232)
T PRK10955 157 LTGTEFTLLYLLAQHLGQVVSREHLSQEV 185 (232)
T ss_pred CCHHHHHHHHHHHhCCCceEcHHHHHHHH
Confidence 88999999999999999999999999885
No 18
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=97.64 E-value=7.3e-05 Score=67.17 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++...... .......+ ...++.... ..+....|+..+
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~E 159 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAA-PSPVIRIG-HFELDEPAARISYFGTPLTLTRYE 159 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccccccC-CCceeEEC-CEEEecCccEEEECCEEeecCHHH
Confidence 4556667778899999999999999999999999988876432100 01111111 112221111 122356789999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+.++..++++++|++++.+.+
T Consensus 160 ~~il~~l~~~~~~~~s~~~i~~~l 183 (228)
T PRK11083 160 FLLLKTLLLSPGRVFSRQQLMDIV 183 (228)
T ss_pred HHHHHHHHhCCCceECHHHHHHHh
Confidence 999999999999999999999875
No 19
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=97.63 E-value=8.6e-05 Score=66.45 Aligned_cols=98 Identities=27% Similarity=0.275 Sum_probs=68.6
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++... .. ....+..+ ...++.... ..+....|+..+
T Consensus 83 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~E 159 (226)
T TIGR02154 83 TARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRP-QL-SDEVIEVG-DLSLDPVAHRVFRGGQPLSLGPTE 159 (226)
T ss_pred ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccccc-cc-ccCceEEC-CEEEEcCccEEEECCEEEEcCHHH
Confidence 5566677788899999999999999999999999988866421 11 11111111 111221111 122345788999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+.++..++++++|++++.+.+
T Consensus 160 ~~il~~l~~~~~~~~s~~~i~~~~ 183 (226)
T TIGR02154 160 FRLLHFFMTHPERVYSREQLLDRV 183 (226)
T ss_pred HHHHHHHHhCCCceEcHHHHHHHh
Confidence 999999999999999999998764
No 20
>PRK09581 pleD response regulator PleD; Reviewed
Probab=97.59 E-value=7.5e-05 Score=74.52 Aligned_cols=109 Identities=23% Similarity=0.357 Sum_probs=72.1
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh--------------------hhCccccccccccchhh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR--------------------MLGLAEKNILSYDFDLV 60 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r--------------------LTgl~nr~iL~~gLdl~ 60 (445)
+|+..+.+...++++.||+|||.||+++++|..+|...+...+ ++++.++..+...+...
T Consensus 234 ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~lt~l~n~~~~~~~l~~~ 313 (457)
T PRK09581 234 LVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRKRYQDALRNNLEQSIEMAVTDGLTGLHNRRYFDMHLKNL 313 (457)
T ss_pred EeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCccccccCHHHHHHHHHHH
Confidence 4677788889999999999999999999999999987665321 11222222221111111
Q ss_pred ccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccC
Q 013329 61 ASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSG 115 (445)
Q Consensus 61 Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~ 115 (445)
+...... ...+.++.++++.|..++...+ +..++..|+.++..|...+.
T Consensus 314 ~~~~~~~-~~~~~~l~i~i~~~~~i~~~~g-----~~~~~~~l~~i~~~l~~~~~ 362 (457)
T PRK09581 314 IERANER-GKPLSLMMIDIDHFKKVNDTYG-----HDAGDEVLREFAKRLRNNIR 362 (457)
T ss_pred HHHHHhc-CCcEEEEEEecchhhHhHHhhC-----hhhHHHHHHHHHHHHHhhCC
Confidence 2211111 2346788899999999988764 44666777788888877664
No 21
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=97.53 E-value=0.00018 Score=64.32 Aligned_cols=96 Identities=23% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++... . ....+..+ +..+..... .+.....|+..+
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~E 154 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQG--Q-GENELQVG-NLTLNLGRQQVWLDGQELILTPKE 154 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhcc--c-cCCceEEC-CEEEEcCCCEEEECCEEEecCHHH
Confidence 5566777888999999999999999999999999998876431 1 11111111 111111111 122356788889
Q ss_pred ccchhhhhcCCCcccChHHHHhh
Q 013329 79 TDDKSRRSTNPEIGMSTHQETES 101 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~ 101 (445)
++.+..+..++|..++++.+.+.
T Consensus 155 ~~il~~l~~~~g~~~~~~~~~~~ 177 (222)
T PRK10643 155 FALLSRLMLKAGSPVHREILYQD 177 (222)
T ss_pred HHHHHHHHhCCCceEcHHHHHHH
Confidence 99999999999999999999874
No 22
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=97.52 E-value=0.00017 Score=64.54 Aligned_cols=97 Identities=25% Similarity=0.257 Sum_probs=69.0
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhccccc---cCCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPS---DANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~as---r~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++..+|..+|+.++++.. +.. ...+..+ +..++... ...+..+.|+..+
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~E 154 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN--GQA-SNELRHG-NVMLDPGKRIATLAGEPLTLKPKE 154 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccc--cCC-CCceeEC-CEEEEcccCEEEECCEEEecCHHH
Confidence 556667777889999999999999999999999999887542 111 1111111 11221111 1123356789999
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.|..+..++++++|++++.+..
T Consensus 155 ~~il~~l~~~~~~~~s~~~i~~~l 178 (219)
T PRK10336 155 FALLELLMRNAGRVLPRKLIEEKL 178 (219)
T ss_pred HHHHHHHHhCCCccCcHHHHHHHh
Confidence 999999999999999999998874
No 23
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=97.42 E-value=0.00032 Score=62.76 Aligned_cols=97 Identities=24% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccc--ccCCCCeEEEEeecc
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDP--SDANTNSTTLFSDDT 79 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~a--sr~n~~slaLL~lDL 79 (445)
|+..+.....+++++|+++||.||++..+|..+++.++++... .... ....+ .+.+... ....+..+.|+..++
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~~~~~~~~~~Lt~~E~ 154 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAG--QVQE-VQQLG-ELIFHDEGYFLLQGQPLALTPREQ 154 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhcc--CcCc-cEEEC-CEEEccCCeEEECCEEEecCHHHH
Confidence 4556667778899999999999999999999999988876431 1111 11111 1111110 011223567999999
Q ss_pred cchhhhhcCCCcccChHHHHhhc
Q 013329 80 DDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 80 D~FKlINdn~g~vvSreQl~d~~ 102 (445)
+.+.++..+++.++++.++.+..
T Consensus 155 ~il~~l~~~~~~~~~~~~i~~~l 177 (221)
T PRK15479 155 ALLTVLMYRRTRPVSRQQLFEQV 177 (221)
T ss_pred HHHHHHHhCCCCcCcHHHHHHHh
Confidence 99999999999999999999874
No 24
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=97.13 E-value=0.0008 Score=61.30 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhccccc---cCCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPS---DANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~as---r~n~~slaLL~lD 78 (445)
++..+......++.+|+++||.||++..+|..+|+.++++........ .....+ ...++... ...+..+.|+..+
T Consensus 88 ~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~~e 165 (240)
T PRK10710 88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQ-QQDAES-PLIIDESRFQASWRGKMLDLTPAE 165 (240)
T ss_pred EcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhccccCCCc-cceEeC-CEEEEcCceEEEECCEEeecCHHH
Confidence 344556667789999999999999999999999999887643211100 001111 11111111 1122355688889
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+.++..+++.++|++++.+..
T Consensus 166 ~~il~~l~~~~~~~~s~~~i~~~~ 189 (240)
T PRK10710 166 FRLLKTLSHEPGKVFSREQLLNHL 189 (240)
T ss_pred HHHHHHHHhCCCceEcHHHHHHHh
Confidence 999999999999999999998874
No 25
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=96.95 E-value=0.00055 Score=61.49 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=54.7
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCCc
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTA 117 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~~ 117 (445)
.+|++.|+..+...+...+...... ...++|+++|+|+||.||+..| |+.+|.+|+.+|..|...+...
T Consensus 24 ~LTgl~NR~~~~~~l~~~~~~~~~~-~~~~~l~~iDiD~Fk~iND~~G-----h~~GD~vL~~va~~L~~~~~~~ 92 (181)
T COG2199 24 PLTGLPNRRAFEERLERALARARRH-GEPLALLLLDLDHFKQINDTYG-----HAAGDEVLREVARRLRSNLREG 92 (181)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhcc-CCCeEEEEEeCcCCcccccccc-----chHHHHHHHHHHHHHHHhcCCC
Confidence 5678888877765555555544332 2368999999999999999994 8999999999999999888765
No 26
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=96.68 E-value=0.0017 Score=63.38 Aligned_cols=101 Identities=17% Similarity=0.299 Sum_probs=65.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhccccccC---CCCeEEEEee
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDA---NTNSTTLFSD 77 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr~---n~~slaLL~l 77 (445)
+||..+.+.+.++++.||.|||.|||..+.|..++....+++..... +...-+..+|..+...... ...+-+|...
T Consensus 80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~-~~~~sQ~~lD~l~~~~~k~~~~~~LPkGi~~~ 158 (224)
T COG4565 80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALES-HQQLSQKELDQLFNIQSKEQPPDDLPKGLDEL 158 (224)
T ss_pred EeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHhh-hcccCHHHHHHHHhccccccCcccCCCCcCHH
Confidence 57888999999999999999999999999999999888776543211 1111122234433322221 1122334444
Q ss_pred cccchhhhhcCCCcccChHHHHhhc
Q 013329 78 DTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 78 DLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+......-..++..+|-+++.+.+
T Consensus 159 Tl~~i~~~~~~~~~~~Taeela~~~ 183 (224)
T COG4565 159 TLQKVREALKEPDQELTAEELAQAL 183 (224)
T ss_pred HHHHHHHHHhCcCCccCHHHHHHHh
Confidence 4444444445788899999988875
No 27
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=96.55 E-value=0.0017 Score=62.55 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=39.8
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
||++.+....+++++.||.|||.|||+..+|+..|+.++++.
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999764
No 28
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.45 E-value=0.0039 Score=66.80 Aligned_cols=44 Identities=32% Similarity=0.586 Sum_probs=41.1
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 44 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rL 44 (445)
||++.+.+..++|++.||.|||.|||+++.|+..|++++...++
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999987653
No 29
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=96.03 E-value=0.0036 Score=65.98 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=51.3
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+|++.|+..|...++..+....... ..++|+++|+|+||.||+.. +|+.+|.+|+.+|..|...+..
T Consensus 403 LTgl~Nr~~f~~~l~~~~~~~~~~~-~~~~l~~idid~fk~iNd~~-----G~~~GD~~L~~~a~~l~~~~~~ 469 (570)
T PRK15426 403 LTRLYNRGALFEKARALAKRCQRDQ-QPFSVIQLDLDHFKSINDRF-----GHQAGDRVLSHAAGLISSSLRA 469 (570)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcC-CcEEEEEEECcccCHhhHhh-----ChHHHHHHHHHHHHHHHHhCCC
Confidence 5677777666555454444433322 36899999999999999999 7889999999999999887653
No 30
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=95.01 E-value=0.0097 Score=55.03 Aligned_cols=41 Identities=46% Similarity=0.799 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCcccchhhhhhhhhhCCCCCc
Q 013329 359 VDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRG 399 (445)
Q Consensus 359 ~~~R~~~~~ry~eKr~~R~f~kkirY~~RK~~A~~RpRvkG 399 (445)
...|++.+.||+++++.|.|.++++|..||..|+.|+|+||
T Consensus 290 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 290 SHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred cchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 45699999999999999999999999999999999999999
No 31
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=94.87 E-value=0.015 Score=59.68 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=51.2
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|++.|+..+...++..+....+. ....+|+.+|+|+||.||+.. +++.+|.+|+.+|..|...+..
T Consensus 209 ~LTGL~NR~~f~~~l~~~l~~~~~~-~~~~~ll~idId~Fk~INd~~-----Gh~~GD~lL~~vA~~L~~~l~~ 276 (366)
T PRK10245 209 GMTGVYNRRHWETLLRNEFDNCRRH-HRDATLLIIDIDHFKSINDTW-----GHDVGDEAIVALTRQLQITLRG 276 (366)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEEECCcchHHHHhh-----CchHHHHHHHHHHHHHHHhCCC
Confidence 3467777776655555555543332 236789999999999999999 7788999999999999887654
No 32
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=94.74 E-value=0.022 Score=59.27 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=39.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||+|||.||+++.+|..++...++.++
T Consensus 95 lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~ 137 (360)
T COG3437 95 LTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKR 137 (360)
T ss_pred EeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999998876553
No 33
>PRK11059 regulatory protein CsrD; Provisional
Probab=94.69 E-value=0.019 Score=62.59 Aligned_cols=67 Identities=7% Similarity=0.024 Sum_probs=52.6
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSG 115 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~ 115 (445)
.+||+.||..|...++..+....+.. ...+|+++|+|+||.||+.. +|+.+|.+|+.+|..|...+.
T Consensus 232 ~LTGL~NR~~f~~~l~~~l~~~~~~~-~~~~ll~idid~fk~iNd~~-----Gh~~gD~~L~~va~~L~~~~~ 298 (640)
T PRK11059 232 AKTGLGNRLFFDNQLATLLEDQEMVG-AHGVVMLIRLPDFDLLQEEW-----GESQVEELLFELINLLSTFVM 298 (640)
T ss_pred cccCCccHHHHHHHHHHHHHHHhhcC-CcEEEEEEECchHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHh
Confidence 45778888777666665665443322 25789999999999999999 688999999999999988765
No 34
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=94.59 E-value=0.064 Score=50.28 Aligned_cols=43 Identities=28% Similarity=0.501 Sum_probs=37.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.....+++++||++||.||++.++|...|+.++....
T Consensus 84 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 84 TTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred EEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 3566777888899999999999999999999999998876544
No 35
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.12 E-value=0.067 Score=55.22 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=36.7
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+...+++++||+|||.||++.++|..+|+.++...
T Consensus 79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 120 (445)
T TIGR02915 79 ITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLY 120 (445)
T ss_pred EecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhh
Confidence 466777888999999999999999999999999998877643
No 36
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=93.77 E-value=0.036 Score=37.90 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhcccCCCcccchh
Q 013329 361 RREAALIKFRQKRKERCFDKKIRYV 385 (445)
Q Consensus 361 ~R~~~~~ry~eKr~~R~f~kkirY~ 385 (445)
.|.+.|+||.||||.|... +.-|.
T Consensus 3 aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 3 ARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ---HHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 4899999999999999987 55553
No 37
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=93.75 E-value=0.11 Score=46.04 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|...+......+++.|+++||.||++..+|..+|+.+++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 79 SVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 4556677778899999999999999999999999888754
No 38
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=93.67 E-value=0.11 Score=46.24 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=34.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+..+......++..|+++||.||++..+|..+|+.+++.
T Consensus 80 s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 80 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred eCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 4556677788999999999999999999999999988754
No 39
>PRK10693 response regulator of RpoS; Provisional
Probab=93.67 E-value=0.1 Score=52.05 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=34.6
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPf-d~eELLaRVra~LrR 41 (445)
+|+..+.+...+++++||+|||.||+ +.++|..+|...++.
T Consensus 51 lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~ 92 (303)
T PRK10693 51 ISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYP 92 (303)
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhh
Confidence 35667778888999999999999999 589999998877643
No 40
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=93.33 E-value=0.16 Score=48.05 Aligned_cols=42 Identities=21% Similarity=0.493 Sum_probs=36.1
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+......++..|+++||.||++.++|...|..++.+.
T Consensus 83 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 356677788889999999999999999999999998876544
No 41
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=93.26 E-value=0.2 Score=39.16 Aligned_cols=38 Identities=18% Similarity=0.439 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 4 QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 4 ~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
.........+++.|+++||.||++..+|..+++.++++
T Consensus 89 ~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 89 EAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred CCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 34456677889999999999999999999999888765
No 42
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=93.03 E-value=0.15 Score=45.28 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhccccccCCCCeEEEEeecccc
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDD 81 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~ 81 (445)
|+..+......++..|+++|+.||++..+|...|+.++.+... .... .+... . .... .........|...++..
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~--~~~~-~~~~~-~-~~~~-~~~~~~~~~lt~re~~v 157 (210)
T PRK09935 84 SSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTF--FPSE-TLNYI-K-SNKC-STNSSTDTVLSNREVTI 157 (210)
T ss_pred ECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCce--eCHH-HHHHH-H-hccc-ccCccccccCCHHHHHH
Confidence 4556667778899999999999999999999999888765321 1011 11000 0 0000 00111244577777777
Q ss_pred hhhhhcCCCcccChHHHHhhc
Q 013329 82 KSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 82 FKlINdn~g~vvSreQl~d~~ 102 (445)
+..+..+ +|++++.+..
T Consensus 158 l~~l~~g----~s~~eIa~~l 174 (210)
T PRK09935 158 LRYLVSG----LSNKEIADQL 174 (210)
T ss_pred HHHHHcC----CCHHHHHHHh
Confidence 7776544 6777777653
No 43
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=92.97 E-value=0.065 Score=50.65 Aligned_cols=37 Identities=27% Similarity=0.592 Sum_probs=32.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTH 37 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra 37 (445)
||+..+....++|+++||++||.||-+.+++++.+..
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 5888999999999999999999999999998876543
No 44
>PRK13561 putative diguanylate cyclase; Provisional
Probab=92.92 E-value=0.084 Score=57.22 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=50.9
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|+++|+..|...++..+. .....+|+++|+|+|+.+|+.. +++.+|.+|+.+|..|...+..
T Consensus 235 ~lTgL~NR~~f~~~l~~~l~-----~~~~~~l~~idld~f~~in~~~-----G~~~gD~lL~~ia~~L~~~~~~ 298 (651)
T PRK13561 235 PVSDLPNKALLMALLEQVVA-----RKQTTALMIITCETLRDTAGVL-----KEAQREILLLTLVEKLKSVLSP 298 (651)
T ss_pred CCcCCccHHHHHHHHHHHHh-----cCCCeEEEEEECCchHHHHHhh-----ChHHHHHHHHHHHHHHHHhCCC
Confidence 35777888777655555554 2236789999999999999988 7889999999999999887754
No 45
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=92.86 E-value=0.17 Score=46.78 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+..+......++++||++||.||+++.+|+..|+.++..
T Consensus 87 s~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 87 TMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 5566777778899999999999999999999999887643
No 46
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=92.81 E-value=0.088 Score=56.97 Aligned_cols=67 Identities=4% Similarity=0.060 Sum_probs=52.3
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|+++|+..|...++..+...... ...+|+.+|+|+|+.+|+.. +++.+|.+|+.+|..|...+..
T Consensus 236 ~lTgL~NR~~f~~~l~~~l~~~~~~--~~~~l~~idid~f~~in~~~-----G~~~gD~lL~~va~~l~~~~~~ 302 (660)
T PRK11829 236 PVTELPNRSLFISLLEKEIASSTRT--DHFHLLVIGIETLQEVSGAM-----SEAQHQQLLLTIVQRIEQCIDD 302 (660)
T ss_pred CccCchhHHHHHHHHHHHHHhhccC--CCEEEEEEECCcHHHHHHhh-----ChHHHHHHHHHHHHHHHHhCCC
Confidence 4578888887766666666543332 25789999999999999999 7889999999999999876643
No 47
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=92.43 E-value=0.2 Score=47.70 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=35.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+.........+++.|+++||.|||+..+|..+|+.++..
T Consensus 84 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 84 LSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 35666777788899999999999999999999999887654
No 48
>PRK09894 diguanylate cyclase; Provisional
Probab=92.26 E-value=0.16 Score=48.81 Aligned_cols=65 Identities=22% Similarity=0.156 Sum_probs=47.9
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+|+++|+..|...++..+.. + ....++|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 134 lTgL~Nr~~~~~~l~~~~~~--~-~~~~~~l~~i~id~f~~in~~~-----G~~~gd~~L~~ia~~l~~~~~~ 198 (296)
T PRK09894 134 LTGLPGRRVLDESFDHQLRN--R-EPQNLYLALLDIDRFKLVNDTY-----GHLIGDVVLRTLATYLASWTRD 198 (296)
T ss_pred ccCCCcHHHHHHHHHHHHHH--c-cCCcEEEEEEECccccHHHHcc-----CcHHHHHHHHHHHHHHHHhCCC
Confidence 46777776665544322221 1 2236789999999999999998 6778999999999999887654
No 49
>PLN03029 type-a response regulator protein; Provisional
Probab=92.18 E-value=0.23 Score=47.37 Aligned_cols=40 Identities=30% Similarity=0.611 Sum_probs=32.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+........+++++|+++||.||+...+|...+..+++.
T Consensus 109 s~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~ 148 (222)
T PLN03029 109 SSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKT 148 (222)
T ss_pred eCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHH
Confidence 5566677788999999999999999999987666655543
No 50
>PRK09581 pleD response regulator PleD; Reviewed
Probab=91.86 E-value=0.3 Score=48.91 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+.....++++.|+++||.||++.++|..+|+.+++..
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 83 TALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 45566777889999999999999999999999999887654
No 51
>PRK09776 putative diguanylate cyclase; Provisional
Probab=91.77 E-value=0.085 Score=59.75 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=52.2
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|++.|+..|...+...+......+ ....|+++|+|+||.+|+.. +++.+|.+|+.+|..|...+.+
T Consensus 669 ~lTgl~nr~~f~~~l~~~~~~~~~~~-~~~~l~~idid~fk~in~~~-----G~~~gd~~L~~~a~~l~~~~~~ 736 (1092)
T PRK09776 669 ALTHLANRASFEKQLRRLLQTVNSTH-QRHALVFIDLDRFKAVNDSA-----GHAAGDALLRELASLMLSMLRS 736 (1092)
T ss_pred cccCCccHHHHHHHHHHHHHHHHhcC-CcEEEEEEECcchHHHHHhh-----ChhhHHHHHHHHHHHHHHhCCC
Confidence 46788887776655555554433333 36889999999999999999 7788999999999999877654
No 52
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=91.65 E-value=0.2 Score=54.24 Aligned_cols=42 Identities=31% Similarity=0.511 Sum_probs=37.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|||.++-+.+.+|+.+|+.|||.||++-.+|...+..+....
T Consensus 82 LSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999888887654
No 53
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=91.35 E-value=0.22 Score=50.44 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=47.4
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhccc
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTS 114 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~ 114 (445)
+|++.|+..|...++..+.... ......|+.+|+|+|+.+|+.. +++.+|.+|+.+|..|....
T Consensus 253 lTgl~nr~~f~~~l~~~~~~~~--~~~~~~l~~i~id~f~~in~~~-----G~~~gd~~l~~~a~~L~~~~ 316 (407)
T PRK09966 253 LTGLANRAAFRSGINTLMNNSD--ARKTSALLFLDGDNFKYINDTW-----GHATGDRVLIEIAKRLAEFG 316 (407)
T ss_pred ccCCccHHHHHHHHHHHHHHhh--cCCceEEEEEECccchHHHhhh-----chHHHHHHHHHHHHHHHHhC
Confidence 4666676666555554444322 1235689999999999999999 68899999999999997644
No 54
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=90.96 E-value=0.33 Score=46.37 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=33.6
Q ss_pred CCCCCcHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCL-RLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveAL-eaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+......++ ++||++||.||+++++|+..|+.++...
T Consensus 74 lt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 74 IADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred EeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 35656565566655 7999999999999999999999987643
No 55
>PRK09483 response regulator; Provisional
Probab=90.95 E-value=0.43 Score=42.90 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=34.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|...+......++..|+++||.||++..+|...|+.++..
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 82 TVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred eCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4556667778899999999999999999999999887754
No 56
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=90.01 E-value=0.32 Score=50.25 Aligned_cols=42 Identities=36% Similarity=0.517 Sum_probs=36.2
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+....+++.|++|||.||++..+|...|+.++...
T Consensus 82 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 82 MTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred EeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcccc
Confidence 356777888899999999999999999999999998877543
No 57
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=89.99 E-value=0.51 Score=45.07 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=37.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+...+..++++||+.||.|..++++|...|+.++...
T Consensus 80 lt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 477888999999999999999999999999999999987543
No 58
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=89.97 E-value=0.57 Score=38.77 Aligned_cols=40 Identities=33% Similarity=0.448 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNE-LLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eE-LLaRVra~LrR 41 (445)
|+.........++..|+++||.||+...+ |...|+..+..
T Consensus 86 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 86 TAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 55556655667789999999999977776 77777755543
No 59
>PRK10403 transcriptional regulator NarP; Provisional
Probab=89.93 E-value=0.57 Score=41.28 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+...+......+++.|+++||.||++..+|..+|+.++..
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 87 TVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred eCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 3445666777889999999999999999999999887654
No 60
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=89.90 E-value=0.56 Score=40.83 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+..+......++..|+++||.||++..+|...|+..+..
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 84 TARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred eCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4556667778899999999999999999999999887654
No 61
>PRK10060 RNase II stability modulator; Provisional
Probab=89.83 E-value=0.28 Score=53.99 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=52.0
Q ss_pred HhhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 42 RRMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 42 ~rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
-.+|+++|+..|...++..+.. . ....++|+++|+|+|+.+|+.. ++..+|.+|+.+|..|...+..
T Consensus 240 D~LTGL~NR~~f~~~l~~~l~~--~-~~~~~~ll~idld~fk~iNd~~-----G~~~gD~lL~~va~~L~~~~~~ 306 (663)
T PRK10060 240 DSITGLPNRNAIQELIDHAINA--A-DNNQVGIVYLDLDNFKKVNDAY-----GHMFGDQLLQDVSLAILSCLEE 306 (663)
T ss_pred CccCCCcCHHHHHHHHHHHHHh--C-CCCcEEEEEEECcchhHHHHhh-----CcHHHHHHHHHHHHHHHHhCCC
Confidence 3578888988877766666622 2 2346789999999999999999 6677899999999999876643
No 62
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=89.31 E-value=0.6 Score=48.73 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=36.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+....++++|+.+||.||++..+|...|..++...
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 356677778889999999999999999999999999887653
No 63
>PRK10651 transcriptional regulator NarL; Provisional
Probab=89.30 E-value=0.71 Score=40.82 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+...+......++..|+++||.||++..+|...|+.++..
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 87 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred eCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3455666777899999999999999999999999988754
No 64
>PRK15115 response regulator GlrR; Provisional
Probab=88.19 E-value=0.49 Score=48.91 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.....+++++|+++||.||++..+|...|..++...
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 356667778889999999999999999999999999888654
No 65
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=88.18 E-value=0.55 Score=52.25 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=36.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+........+++++|+++||.||++..+|...|+..+..
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 46777788889999999999999999999999999887654
No 66
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=88.17 E-value=0.36 Score=52.75 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=49.8
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|+++|+..|...++..+ . .....+|+++|+|+|+.+|+.. +++.+|.+|+++|..|...+.+
T Consensus 380 ~lTgl~Nr~~~~~~l~~~~----~-~~~~~~l~~i~i~~~~~in~~~-----G~~~~d~ll~~~a~~l~~~~~~ 443 (799)
T PRK11359 380 PLTGLPNRNNLHNYLDDLV----D-KAVSPVVYLIGVDHFQDVIDSL-----GYAWADQALLEVVNRFREKLKP 443 (799)
T ss_pred CCCCCccHHHHHHHHHHHH----h-cCCCEEEEEEECCcHHHHHHHh-----CcHHHHHHHHHHHHHHHHhCCC
Confidence 3477888877766555555 1 2236789999999999999999 5889999999999999877653
No 67
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=88.06 E-value=0.73 Score=51.41 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=35.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+.........++++|+++||.||++..+|...|..++..
T Consensus 772 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 772 LTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 46677788888999999999999999999999999877653
No 68
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=87.93 E-value=0.17 Score=42.84 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=53.8
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+|++.++..|...+...+....+.. ..++|+.++++.|..++... +.+.++.+|+.+|..|...+..
T Consensus 6 ~TgL~nr~~f~~~l~~~~~~~~~~~-~~~~l~~i~i~~~~~l~~~~-----G~~~~~~~l~~i~~~L~~~~~~ 72 (161)
T PF00990_consen 6 LTGLPNRRYFEEKLESLLERASREG-EPFALVLIDIDNLDELNEKY-----GYEVGDEILRQIAKRLKKQLRE 72 (161)
T ss_dssp TTSSBEHHHHHHHHHHHHHHHHHHT-SEEEEEEEEETTHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCCcHHHHHHHHHHHHHHHHhhcC-CCceEEEEeccccccccccc-----cccccccccccccccccccccc
Confidence 5788888777766666666653322 47899999999999999877 7889999999999999987766
No 69
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=87.39 E-value=0.82 Score=47.45 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=36.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.....+++++|+++||.||+..++|...|+.++...
T Consensus 76 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 76 MTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred EeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 356667778889999999999999999999999998887643
No 70
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=86.59 E-value=0.95 Score=43.89 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=36.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+...+.+++++|+..||+||++..-|+..|.-+..+.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 478889999999999999999999999999998887776654
No 71
>PRK13435 response regulator; Provisional
Probab=86.08 E-value=1.1 Score=38.44 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=28.5
Q ss_pred HHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 11 VKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 11 veALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
..++..|+++||.||++..+|...|+.++.+..
T Consensus 91 ~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 91 VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 467889999999999999999999988876543
No 72
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=86.04 E-value=1.5 Score=40.54 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 8 SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 8 e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+....+++.|+.+||.||++.++|...|..++..
T Consensus 85 ~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 85 EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999887654
No 73
>PRK14084 two-component response regulator; Provisional
Probab=85.79 E-value=1.5 Score=40.92 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 8 SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 8 e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
....++++.|+.+||.||+...+|...|..++...
T Consensus 85 ~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 85 QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 34568899999999999999999999998877543
No 74
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=85.72 E-value=0.68 Score=40.12 Aligned_cols=41 Identities=22% Similarity=0.523 Sum_probs=34.7
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......+++.|+.+|+.||+...+|..++..++...
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred ECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 45566777788999999999999999999999998877653
No 75
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=85.71 E-value=0.67 Score=47.59 Aligned_cols=42 Identities=33% Similarity=0.502 Sum_probs=36.2
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+....+++.|+.+||.||++..+|...|..++...
T Consensus 83 lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 83 MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 356667788889999999999999999999999999887653
No 76
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=85.24 E-value=1.2 Score=50.25 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=35.7
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+.........++++|+++||.||++..+|...|..++..
T Consensus 783 lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 35667778888999999999999999999999999888754
No 77
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=83.78 E-value=1.3 Score=49.72 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=35.6
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+........++++.|+++||.||++.++|...|..++..
T Consensus 760 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 35666777788899999999999999999999999988764
No 78
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=83.06 E-value=1.6 Score=50.69 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=35.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+..+.....+++++|+++||.||++..+|...|+.++..
T Consensus 1036 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1036 LTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 36677788888999999999999999999999999876643
No 79
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=82.25 E-value=1.1 Score=32.86 Aligned_cols=33 Identities=36% Similarity=0.563 Sum_probs=26.9
Q ss_pred cHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Q 013329 6 EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 38 (445)
Q Consensus 6 d~e~iveALeaGAdDYLtKPfd~eELLaRVra~ 38 (445)
.......++..|+.+|+.||+...+|...++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 80 DDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred cHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 445566788999999999999999988877643
No 80
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=81.19 E-value=2.3 Score=43.78 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=58.5
Q ss_pred HHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeecccchhhh
Q 013329 9 VVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDDTDDKSRR 85 (445)
Q Consensus 9 ~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lDLD~FKlI 85 (445)
....+-+.|...++.+.++.+.|+..|...+.-.+- ..+..+ ++.++.... .++..+.|...+++.+..+
T Consensus 246 Ta~al~~~G~~~~vp~~~t~~~Lv~~i~~~~~~~~~------~~~~~~-~~~l~~~~~~l~~~~~~i~Lt~~E~~lL~~L 318 (381)
T PRK07239 246 TAAPLVRAGVPTSAPERMRLGALARHITEELPLRRA------RTLRAA-GHVLEIRGHAVVVDGEVKPLSPAPMALLRAL 318 (381)
T ss_pred HHHHHHHcCCCccCCCCCCHHHHHHHHHHHhhhhcC------ceEEEC-CEEEECCCCEEEECCEEEEcCHHHHHHHHHH
Confidence 334455677665667768888888888766544331 122222 222322221 1345788999999999999
Q ss_pred hcCCCcccChHHHHhhc
Q 013329 86 STNPEIGMSTHQETESV 102 (445)
Q Consensus 86 Ndn~g~vvSreQl~d~~ 102 (445)
..|+++++|++++++.+
T Consensus 319 ~~~~~~vvsr~~L~~~v 335 (381)
T PRK07239 319 AARPGRVVSREDLLAAL 335 (381)
T ss_pred HhCCCceEeHHHHHHHh
Confidence 99999999999999985
No 81
>COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]
Probab=81.11 E-value=0.74 Score=49.71 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=40.5
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHH
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQE 98 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl 98 (445)
+|+++|+..+...++.++..+...+ ..+.+..+|+|.||.+|+..|+-...--+
T Consensus 233 LTgLpNRr~ffa~Ldarlaaar~~g-~rl~lgvIDLDgFKpvND~~GH~~GDrLL 286 (663)
T COG5001 233 LTGLPNRRRFFAELDARLAAARQSG-RRLVLGVIDLDGFKPVNDAFGHATGDRLL 286 (663)
T ss_pred hcCCcchhHHHHHHHHHHhhhhhcC-CceEEEEEeccCCeeccccccccchhHHH
Confidence 4677887777777777777654433 47899999999999999999776544333
No 82
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=77.20 E-value=1.3 Score=36.68 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=48.5
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+|++.++..|...++..+....+.. ..+.|+.++++.|..++... +.+..+..|+.+|.+|...+.+
T Consensus 5 ~Tgl~n~~~f~~~~~~~~~~~~~~~-~~~~l~~i~i~~~~~i~~~~-----g~~~~~~~l~~~~~~l~~~~~~ 71 (158)
T cd01949 5 LTGLPNRRAFEERLERLLARARRSG-RPLALLLIDIDHFKQINDTY-----GHAAGDEVLKEVAERLRSSLRE 71 (158)
T ss_pred cCCCcCHHHHHHHHHHHHHHHHhcC-CeEEEEEEEchhhhHHHHhh-----ChHhHHHHHHHHHHHHHHhCCC
Confidence 3566666666555555554433322 36789999999999999888 5778888999999999877754
No 83
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=76.40 E-value=1.5 Score=36.51 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=47.5
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+|++.++..|...++..+..... ......|+.++++.|..++... +.+..+.+|+.+|..|...+..
T Consensus 8 ~Tgl~n~~~~~~~~~~~~~~~~~-~~~~~~l~~i~i~~~~~~~~~~-----g~~~~~~~l~~i~~~l~~~~~~ 74 (163)
T smart00267 8 LTGLPNRRYFEEELEQELQRAQR-QGSPFALLLIDLDNFKDINDTY-----GHAVGDELLQEVAQRLSSCLRP 74 (163)
T ss_pred ccCchhHHHHHHHHHHHHHHhhc-cCCeEEEEEEEccccchhhhcc-----CchhHHHHHHHHHHHHHHhcCC
Confidence 46666666665554444443222 2234889999999999999877 5777899999999999877654
No 84
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=76.16 E-value=1.2 Score=37.83 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=45.3
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSG 115 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~ 115 (445)
+|++.++..|...++..+......+ ....|+.++++.|..++... +.+..+..|+.+|..|...+.
T Consensus 7 ~Tgl~n~~~f~~~l~~~~~~~~~~~-~~~~l~~i~i~~~~~i~~~~-----G~~~~~~ll~~~a~~l~~~~~ 72 (165)
T TIGR00254 7 LTGLYNRRYLEEMLDSELKRARRFQ-RSFSVLMIDIDNFKKINDTL-----GHDVGDEVLREVARILQSSVR 72 (165)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhC-CceEEEEEeccchhHHHHhh-----ChhhHHHHHHHHHHHHHHhcC
Confidence 3566666655554444444332222 25679999999999999887 566778888889988877653
No 85
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=75.87 E-value=3.6 Score=41.36 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCcEEEECCC---------CHHHHHHHHHHHH
Q 013329 7 VSVVVKCLRLGAADYLVKPL---------RTNELLNLWTHMW 39 (445)
Q Consensus 7 ~e~iveALeaGAdDYLtKPf---------d~eELLaRVra~L 39 (445)
.....++++.|+++||.||+ ..++|+.+|+.+.
T Consensus 87 ~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 87 ASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred HHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 45567899999999999999 4556666665554
No 86
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=74.12 E-value=4.2 Score=45.10 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 8 SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 8 e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
.....++++|+++||.||++..+|...|+.++..
T Consensus 612 ~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 612 KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 3456789999999999999999999999887744
No 87
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.42 E-value=2.8 Score=43.57 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=57.8
Q ss_pred HHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccch-hhccccccCCCCeEEEEeecccchhhhhcCC
Q 013329 11 VKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFD-LVASDPSDANTNSTTLFSDDTDDKSRRSTNP 89 (445)
Q Consensus 11 veALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLd-l~Ld~asr~n~~slaLL~lDLD~FKlINdn~ 89 (445)
..++..-++|||.||+..+.|-..|.+++.+...++...-..+...|. .++. .+.+...-=+...-.+.|..+-.|.
T Consensus 86 ~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~--~rqg~~vkWis~KA~ELFayLv~hk 163 (361)
T COG3947 86 DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVV--LRQGQQVKWISRKALELFAYLVEHK 163 (361)
T ss_pred hhhcccchHhhccCCCCHHHHHHHHHHHhccccccchhccCeeeEeccceeee--ccCCceeeehhhHHHHHHHHHHHhc
Confidence 445666779999999999999988888886655444322222211111 1111 1112212236667788999999999
Q ss_pred CcccChHHHHhh
Q 013329 90 EIGMSTHQETES 101 (445)
Q Consensus 90 g~vvSreQl~d~ 101 (445)
|+.+++..+.+.
T Consensus 164 gk~v~~~~~ie~ 175 (361)
T COG3947 164 GKEVTSWEAIEA 175 (361)
T ss_pred CCcccHhHHHHH
Confidence 999999988875
No 88
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=72.50 E-value=4.7 Score=40.41 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Q 013329 4 QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 39 (445)
Q Consensus 4 ~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~L 39 (445)
..+.+....++++|+.|||.+|+...+|...+..+.
T Consensus 51 ~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 51 EPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 446778889999999999999999999998887653
No 89
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=64.50 E-value=11 Score=38.26 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCcEEEECCCC
Q 013329 7 VSVVVKCLRLGAADYLVKPLR 27 (445)
Q Consensus 7 ~e~iveALeaGAdDYLtKPfd 27 (445)
.....++++.|+++||.||+.
T Consensus 90 ~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 90 AEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHHHHHHHhCCCcEEEeCCcc
Confidence 355678999999999999994
No 90
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=60.24 E-value=13 Score=35.74 Aligned_cols=32 Identities=6% Similarity=-0.039 Sum_probs=26.5
Q ss_pred HHHHHH--cCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 10 VVKCLR--LGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 10 iveALe--aGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
...++. +||.+||.|+.+.++|+..|+.++..
T Consensus 94 ~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 94 PYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 344555 49999999999999999999988754
No 91
>PRK13558 bacterio-opsin activator; Provisional
Probab=58.90 E-value=11 Score=40.99 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=31.3
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHH--HHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTN--ELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~e--ELLaRVra~LrR 41 (445)
+|+..+.....+++..|+.+||.||.... .|..+|+.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 35667788889999999999999997643 666666666543
No 92
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=49.08 E-value=13 Score=30.56 Aligned_cols=40 Identities=13% Similarity=-0.023 Sum_probs=34.3
Q ss_pred EEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 72 TTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 72 laLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
++|+.+|++.|..++... +...++..|+.++..|...+..
T Consensus 2 ~~ll~i~i~~~~~i~~~~-----g~~~~~~~l~~~~~~l~~~~~~ 41 (133)
T cd07556 2 VTILFADIVGFTSLADAL-----GPDEGDELLNELAGRFDSLIRR 41 (133)
T ss_pred EEEEEEEchhhHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999888 7778889999999888877654
No 93
>PRK12704 phosphodiesterase; Provisional
Probab=42.24 E-value=20 Score=39.48 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=33.9
Q ss_pred CCCCcHH--HHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVS--VVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e--~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+.+... ....+|+.|+.|+++||+.++++..+++..+...
T Consensus 256 s~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 256 SGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred ecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 4444444 7778999999999999999999999999888643
No 94
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=37.69 E-value=18 Score=29.07 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 69 TNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 69 ~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+..+.|...++..|..+..++++++|++++++.+
T Consensus 19 ~~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~l 52 (95)
T cd00383 19 GEPVELTPKEFELLELLARNPGRVLSREQLLEAV 52 (95)
T ss_pred CEEEEeCHHHHHHHHHHHhCCCCcCCHHHHHHHh
Confidence 4577899999999999999999999999999986
No 95
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=35.16 E-value=11 Score=29.37 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=28.7
Q ss_pred eEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 71 STTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 71 slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+.|...++..|..+..|+++++|++++.+.+
T Consensus 3 ~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~~ 34 (77)
T PF00486_consen 3 PVKLTPKEFRLLELLLRNPGRVVSREELIEAL 34 (77)
T ss_dssp EEESSHHHHHHHHHHHHTTTSEEEHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHhCCCCCCCHHHhCChh
Confidence 56778888999999999999999999999975
No 96
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=33.74 E-value=54 Score=33.94 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHhhcc
Q 013329 358 KVDRREAALIKFRQKRKE 375 (445)
Q Consensus 358 ~~~~R~~~~~ry~eKr~~ 375 (445)
+++.|..+-.|||+|||.
T Consensus 231 kr~qnk~AAtRYRqKkRa 248 (294)
T KOG4571|consen 231 KRQQNKAAATRYRQKKRA 248 (294)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 345677777999999875
No 97
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=31.69 E-value=25 Score=27.13 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=28.3
Q ss_pred eEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 71 STTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 71 slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+.|...++..|..+..+++++++++++.+.+
T Consensus 3 ~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~l 34 (78)
T smart00862 3 PIKLTPKEFRLLELLLRNPGRVVSREELLEAV 34 (78)
T ss_pred eEecCHHHHHHHHHHHhCCCCccCHHHHHHHH
Confidence 46677888999999999999999999999974
No 98
>PHA03237 envelope glycoprotein M; Provisional
Probab=30.64 E-value=38 Score=36.65 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhcccCCCc--ccchhhhhhhhhhCC
Q 013329 361 RREAALIKFRQKRKERCFDK--KIRYVNRKRLAERRP 395 (445)
Q Consensus 361 ~R~~~~~ry~eKr~~R~f~k--kirY~~RK~~A~~Rp 395 (445)
-|.-+--.|..||.+|-|.+ ++|=..|..+.-.|.
T Consensus 345 vRlvRa~~yHr~~~t~fy~~v~~~~~~~~~~~~r~r~ 381 (424)
T PHA03237 345 VRLVRACLYHRRRSTRFYGRVKTVQQKVKRYLNRVRG 381 (424)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 36666678898988888864 355455555444443
No 99
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=27.54 E-value=82 Score=25.72 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.6
Q ss_pred CcccchhhhhhhhhhCCC-CCcceec
Q 013329 379 DKKIRYVNRKRLAERRPR-VRGQFVR 403 (445)
Q Consensus 379 ~kkirY~~RK~~A~~RpR-vkGrFvk 403 (445)
.|..-+++|-..|-.|+| --|||.+
T Consensus 36 rkpYlhESRH~HAm~R~Rg~gGRFl~ 61 (62)
T smart00521 36 RKPYLHESRHLHAMRRPRGSGGRFLN 61 (62)
T ss_pred cCCcccchhHHHHHccCcCCCCCCCC
Confidence 466889999999999999 6789975
No 100
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=24.14 E-value=37 Score=37.23 Aligned_cols=35 Identities=14% Similarity=-0.048 Sum_probs=32.0
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.+..+..|+++++|+++|++.+
T Consensus 23 ~g~~V~Lt~~E~~LL~~L~~n~g~vvSRdeLi~~V 57 (517)
T PRK10153 23 QGREVTLEPRLIDLLVFFAQHSGEVLSRDELIDHV 57 (517)
T ss_pred CCEEEEeCHHHHHHHHHHHHCCCceEcHHHHHHHh
Confidence 34578999999999999999999999999999986
No 101
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.24 E-value=30 Score=39.70 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=6.6
Q ss_pred cccccccCCc
Q 013329 277 GAMNQVMLPS 286 (445)
Q Consensus 277 g~~~~~~~~~ 286 (445)
|-|||+++.-
T Consensus 196 ~cvNq~i~~~ 205 (885)
T KOG2023|consen 196 GCVNQFIIIQ 205 (885)
T ss_pred hhhhheeecC
Confidence 5568876665
No 102
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=22.23 E-value=80 Score=35.09 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=23.5
Q ss_pred HHHHHHhhcccCCCcccchhhhhhhhhhCCCCCcceecccCC
Q 013329 366 LIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNG 407 (445)
Q Consensus 366 ~~ry~eKr~~R~f~kkirY~~RK~~A~~RpRvkGrFvk~~~~ 407 (445)
+..|.=..-=++|..+..| |+..+.+++|.+|+-.+....
T Consensus 229 l~~fiGtHDFhNFT~r~~y--~~~~~~~~~~~~~~~~~~~~~ 268 (513)
T PLN03078 229 LNGFEGEHPFHNYTARSKY--RKKLPGKHKQRNGAVSRRAKS 268 (513)
T ss_pred HHhcccccCcccccCCCcc--Ccccccccccccccccccccc
Confidence 3444443333677666666 445666778888887554443
No 103
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=22.19 E-value=1.3e+02 Score=31.95 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCcEEEECCCC
Q 013329 7 VSVVVKCLRLGAADYLVKPLR 27 (445)
Q Consensus 7 ~e~iveALeaGAdDYLtKPfd 27 (445)
.+...+++++||.|||.||..
T Consensus 88 ~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 88 AEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred HHHHHHHHhcCcceeecCCCc
Confidence 667789999999999999974
No 104
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=20.29 E-value=1.2e+02 Score=34.11 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Q 013329 5 DEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 39 (445)
Q Consensus 5 ~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~L 39 (445)
........+.+.|+++|+.||+...+|+..+....
T Consensus 616 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 616 HEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 34455667889999999999999999998887654
Done!