Query 013329
Match_columns 445
No_of_seqs 371 out of 2125
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w25_A Stalked-cell differenti 98.8 4.5E-09 1.5E-13 105.0 6.7 108 2-115 231-358 (459)
2 3bre_A Probable two-component 98.5 4.2E-08 1.4E-12 94.2 4.8 108 1-114 99-240 (358)
3 3r0j_A Possible two component 98.3 8.1E-07 2.8E-11 81.6 5.8 101 1-102 101-205 (250)
4 3q9s_A DNA-binding response re 97.8 1.3E-05 4.6E-10 74.2 4.1 94 1-101 114-210 (249)
5 1p2f_A Response regulator; DRR 97.6 3.9E-05 1.3E-09 68.4 4.4 95 1-102 77-174 (220)
6 1kgs_A DRRD, DNA binding respo 97.6 3.6E-05 1.2E-09 68.5 3.6 98 1-102 80-180 (225)
7 2hqr_A Putative transcriptiona 97.5 4.1E-05 1.4E-09 68.4 3.4 95 1-102 74-172 (223)
8 1ys7_A Transcriptional regulat 97.5 2.1E-05 7.3E-10 70.3 0.9 100 2-102 86-188 (233)
9 2gwr_A DNA-binding response re 97.4 3E-05 1E-09 70.4 0.9 97 2-102 83-182 (238)
10 2oqr_A Sensory transduction pr 97.4 4.4E-05 1.5E-09 68.4 1.4 100 2-102 82-185 (230)
11 3f6p_A Transcriptional regulat 97.2 0.00018 6.1E-09 58.0 3.6 41 1-41 79-119 (120)
12 3gl9_A Response regulator; bet 97.2 0.0003 1E-08 57.0 4.7 40 1-40 82-121 (122)
13 3tvk_A DGC, diguanylate cyclas 97.2 9.7E-05 3.3E-09 67.2 1.5 66 43-116 8-73 (179)
14 3t6k_A Response regulator rece 97.2 0.00035 1.2E-08 57.7 4.8 43 1-43 84-126 (136)
15 3h1g_A Chemotaxis protein CHEY 97.1 0.00048 1.6E-08 56.0 5.0 40 1-40 87-126 (129)
16 2pl1_A Transcriptional regulat 97.1 0.00073 2.5E-08 53.6 5.8 41 2-42 79-119 (121)
17 1zgz_A Torcad operon transcrip 97.1 0.0007 2.4E-08 53.9 5.3 41 2-42 80-120 (122)
18 1jbe_A Chemotaxis protein CHEY 97.0 0.00087 3E-08 53.8 5.8 41 2-42 86-126 (128)
19 3crn_A Response regulator rece 97.0 0.001 3.4E-08 54.3 5.8 43 1-43 81-123 (132)
20 1xhf_A DYE resistance, aerobic 97.0 0.00091 3.1E-08 53.3 5.5 41 2-42 81-121 (123)
21 2a9o_A Response regulator; ess 96.9 0.00084 2.9E-08 52.9 4.8 40 2-41 79-118 (120)
22 1zh2_A KDP operon transcriptio 96.9 0.0011 3.7E-08 52.3 5.5 41 2-42 79-119 (121)
23 3kto_A Response regulator rece 96.9 0.0011 3.8E-08 54.3 5.5 43 1-43 86-128 (136)
24 3cfy_A Putative LUXO repressor 96.9 0.0014 4.6E-08 54.2 5.9 42 2-43 83-124 (137)
25 3kht_A Response regulator; PSI 96.9 0.0013 4.6E-08 54.1 5.8 43 1-43 87-130 (144)
26 3jte_A Response regulator rece 96.9 0.0014 4.9E-08 53.7 5.8 44 1-44 83-126 (143)
27 1dbw_A Transcriptional regulat 96.9 0.00098 3.4E-08 53.6 4.8 41 1-41 81-121 (126)
28 2qzj_A Two-component response 96.9 0.0014 4.9E-08 54.0 5.8 41 2-42 82-122 (136)
29 1p6q_A CHEY2; chemotaxis, sign 96.8 0.0012 4E-08 53.1 4.8 41 1-41 87-127 (129)
30 3hdg_A Uncharacterized protein 96.8 0.0015 5.1E-08 53.2 5.4 43 1-43 85-127 (137)
31 1dcf_A ETR1 protein; beta-alph 96.8 0.0015 5.1E-08 53.3 5.3 40 2-41 90-129 (136)
32 1k68_A Phytochrome response re 96.8 0.0018 6.1E-08 52.1 5.7 42 2-43 92-133 (140)
33 1i3c_A Response regulator RCP1 96.8 0.0017 5.8E-08 54.2 5.7 41 2-42 98-138 (149)
34 2r25_B Osmosensing histidine p 96.8 0.0012 4.2E-08 54.1 4.5 41 1-41 87-127 (133)
35 1tmy_A CHEY protein, TMY; chem 96.8 0.0013 4.4E-08 52.2 4.5 38 2-39 82-119 (120)
36 3lua_A Response regulator rece 96.7 0.00096 3.3E-08 54.7 3.7 43 1-43 87-129 (140)
37 3b2n_A Uncharacterized protein 96.7 0.0015 5.1E-08 53.3 4.7 42 1-42 83-124 (133)
38 1k66_A Phytochrome response re 96.7 0.0023 7.8E-08 52.2 5.7 42 2-43 99-140 (149)
39 3cnb_A DNA-binding response re 96.7 0.0021 7.1E-08 52.2 5.3 42 2-43 91-132 (143)
40 3gt7_A Sensor protein; structu 96.7 0.0019 6.5E-08 54.4 5.1 42 2-43 88-129 (154)
41 1dz3_A Stage 0 sporulation pro 96.7 0.00092 3.1E-08 54.1 3.1 41 2-42 84-124 (130)
42 2zay_A Response regulator rece 96.7 0.0022 7.6E-08 52.7 5.4 42 2-43 89-130 (147)
43 3hv2_A Response regulator/HD d 96.6 0.0026 8.9E-08 53.1 5.8 43 1-43 92-135 (153)
44 3rqi_A Response regulator prot 96.6 0.0012 3.9E-08 57.8 3.3 43 1-43 85-127 (184)
45 3cg0_A Response regulator rece 96.6 0.0026 8.8E-08 51.6 5.1 42 2-43 89-130 (140)
46 3m6m_D Sensory/regulatory prot 96.5 0.0021 7.3E-08 53.5 4.5 41 1-41 96-136 (143)
47 3hdv_A Response regulator; PSI 96.5 0.003 1E-07 51.3 5.3 42 1-42 87-128 (136)
48 4e7p_A Response regulator; DNA 96.5 0.0024 8.3E-08 53.1 4.8 42 1-42 100-141 (150)
49 2jba_A Phosphate regulon trans 96.5 0.0008 2.7E-08 53.8 1.7 40 2-41 83-122 (127)
50 3heb_A Response regulator rece 96.5 0.0038 1.3E-07 51.9 5.7 43 1-43 95-137 (152)
51 1qkk_A DCTD, C4-dicarboxylate 96.5 0.0037 1.3E-07 52.2 5.6 42 2-43 82-123 (155)
52 3eul_A Possible nitrate/nitrit 96.5 0.0032 1.1E-07 52.4 5.1 43 1-43 95-137 (152)
53 1srr_A SPO0F, sporulation resp 96.4 0.0022 7.6E-08 51.2 3.9 40 1-40 81-120 (124)
54 1mb3_A Cell division response 96.4 0.0014 4.7E-08 52.1 2.6 39 2-40 82-120 (124)
55 2qxy_A Response regulator; reg 96.4 0.0026 9E-08 52.0 4.4 42 2-43 82-123 (142)
56 1qo0_D AMIR; binding protein, 96.4 0.0029 9.8E-08 55.4 4.8 42 1-42 85-126 (196)
57 3nhm_A Response regulator; pro 96.4 0.0019 6.4E-08 52.2 3.3 41 2-43 84-124 (133)
58 3eod_A Protein HNR; response r 96.4 0.0021 7.3E-08 51.7 3.6 42 1-42 85-127 (130)
59 3n53_A Response regulator rece 96.4 0.0011 3.6E-08 54.4 1.7 42 2-43 83-124 (140)
60 3kcn_A Adenylate cyclase homol 96.4 0.0041 1.4E-07 51.8 5.3 42 2-43 83-125 (151)
61 1a04_A Nitrate/nitrite respons 96.3 0.0037 1.3E-07 55.3 5.2 42 1-42 85-126 (215)
62 1mvo_A PHOP response regulator 96.3 0.0022 7.5E-08 52.0 3.2 41 2-42 82-122 (136)
63 2qr3_A Two-component system re 96.3 0.0027 9.3E-08 51.5 3.6 41 2-42 87-127 (140)
64 3grc_A Sensor protein, kinase; 96.2 0.002 6.7E-08 52.6 2.7 42 2-43 87-129 (140)
65 3cu5_A Two component transcrip 96.2 0.0017 5.8E-08 53.9 2.2 42 2-43 84-125 (141)
66 3h5i_A Response regulator/sens 96.2 0.00094 3.2E-08 55.0 0.6 42 2-43 85-126 (140)
67 3f6c_A Positive transcription 96.2 0.0016 5.6E-08 52.5 2.0 42 2-43 81-122 (134)
68 1s8n_A Putative antiterminator 96.1 0.0027 9.2E-08 55.9 3.0 42 2-43 92-133 (205)
69 2rjn_A Response regulator rece 96.1 0.0076 2.6E-07 50.2 5.6 42 2-43 86-128 (154)
70 3lte_A Response regulator; str 96.0 0.0053 1.8E-07 49.4 4.2 35 7-41 91-125 (132)
71 2jk1_A HUPR, hydrogenase trans 96.0 0.0071 2.4E-07 49.5 5.0 42 2-43 79-121 (139)
72 3cz5_A Two-component response 96.0 0.0041 1.4E-07 51.8 3.6 41 2-42 86-126 (153)
73 3i5c_A Fusion of general contr 96.0 0.0029 9.8E-08 55.6 2.5 66 43-114 34-99 (206)
74 1dc7_A NTRC, nitrogen regulati 95.9 0.00091 3.1E-08 52.9 -0.8 41 2-42 82-122 (124)
75 1yio_A Response regulatory pro 95.9 0.0029 1E-07 55.5 2.3 41 2-42 83-123 (208)
76 3dzd_A Transcriptional regulat 95.9 0.0064 2.2E-07 60.6 4.9 43 1-43 78-120 (368)
77 1w25_A Stalked-cell differenti 95.9 0.0079 2.7E-07 59.9 5.5 42 1-42 81-122 (459)
78 3qyy_A Response regulator; C-D 95.9 0.00062 2.1E-08 58.3 -2.2 68 43-116 15-82 (167)
79 3cg4_A Response regulator rece 95.8 0.0015 5E-08 53.4 -0.3 41 3-43 89-129 (142)
80 3icl_A EAL/ggdef domain protei 95.7 0.002 6.8E-08 55.0 0.5 67 44-116 4-70 (171)
81 3klo_A Transcriptional regulat 95.7 0.0024 8.1E-08 57.4 0.9 41 2-42 90-130 (225)
82 2qsj_A DNA-binding response re 95.7 0.0053 1.8E-07 51.0 2.8 42 1-42 84-125 (154)
83 1ny5_A Transcriptional regulat 95.7 0.0084 2.9E-07 60.0 4.7 43 1-43 78-120 (387)
84 3mtk_A Diguanylate cyclase/pho 95.7 0.0023 7.9E-08 55.7 0.6 71 38-116 6-76 (178)
85 2gkg_A Response regulator homo 95.5 0.013 4.4E-07 46.2 4.3 35 6-40 90-124 (127)
86 3ign_A Diguanylate cyclase; gg 95.5 0.0024 8.1E-08 55.0 -0.1 68 43-116 12-79 (177)
87 3i42_A Response regulator rece 95.4 0.0035 1.2E-07 50.3 0.8 40 2-42 84-123 (127)
88 2qvg_A Two component response 95.4 0.015 5.3E-07 47.3 4.6 37 2-38 96-132 (143)
89 3hva_A Protein FIMX; ggdef dig 95.4 0.0026 8.7E-08 54.6 -0.2 68 43-116 17-84 (177)
90 2qv0_A Protein MRKE; structura 95.4 0.022 7.6E-07 46.4 5.5 35 9-43 95-129 (143)
91 3ezu_A Ggdef domain protein; m 95.3 0.0049 1.7E-07 60.7 1.5 68 43-116 186-253 (342)
92 3eqz_A Response regulator; str 95.3 0.0076 2.6E-07 48.3 2.3 34 8-41 92-125 (135)
93 3eq2_A Probable two-component 95.0 0.018 6.1E-07 56.5 4.5 43 1-43 83-126 (394)
94 3c3m_A Response regulator rece 94.7 0.019 6.6E-07 46.9 3.3 40 2-41 84-123 (138)
95 3c3w_A Two component transcrip 94.7 0.0053 1.8E-07 55.3 -0.2 43 1-43 81-123 (225)
96 3hvb_A Protein FIMX; EAL phosp 94.4 0.0073 2.5E-07 60.4 0.0 74 37-116 11-84 (437)
97 3kyj_B CHEY6 protein, putative 94.3 0.0069 2.4E-07 49.9 -0.2 38 4-41 98-135 (145)
98 2vyc_A Biodegradative arginine 94.0 0.012 4.3E-07 64.1 0.9 41 2-42 92-134 (755)
99 3pjx_A Cyclic dimeric GMP bind 93.9 0.024 8.2E-07 56.6 2.8 67 43-116 22-88 (430)
100 3hvw_A Diguanylate-cyclase (DG 93.2 0.013 4.5E-07 51.0 -0.4 63 44-116 5-70 (176)
101 3a10_A Response regulator; pho 92.9 0.044 1.5E-06 42.9 2.2 29 11-39 87-115 (116)
102 3sy8_A ROCR; TIM barrel phosph 92.2 0.064 2.2E-06 53.2 2.8 35 8-42 95-129 (400)
103 3ogl_Q JAZ1 incomplete degron 92.0 0.079 2.7E-06 33.4 2.0 17 361-377 5-21 (21)
104 2rdm_A Response regulator rece 91.7 0.09 3.1E-06 41.9 2.6 39 2-42 86-124 (132)
105 3c97_A Signal transduction his 91.0 0.16 5.5E-06 41.3 3.6 28 15-42 104-131 (140)
106 2lpm_A Two-component response 90.4 0.026 8.8E-07 48.4 -1.9 27 13-39 94-120 (123)
107 2j48_A Two-component sensor ki 90.2 0.064 2.2E-06 41.2 0.4 28 12-39 89-116 (119)
108 3ogk_Q JAZ1 incomplete degron 90.1 0.077 2.6E-06 33.8 0.6 19 362-380 1-19 (22)
109 3t8y_A CHEB, chemotaxis respon 88.8 0.077 2.6E-06 45.1 -0.1 27 9-35 114-140 (164)
110 3luf_A Two-component system re 88.7 0.5 1.7E-05 43.9 5.4 28 1-28 80-107 (259)
111 1a2o_A CHEB methylesterase; ba 88.2 0.36 1.2E-05 47.8 4.2 33 8-40 91-132 (349)
112 3cwo_X Beta/alpha-barrel prote 85.9 0.39 1.3E-05 42.3 2.7 37 5-41 63-101 (237)
113 2pln_A HP1043, response regula 85.1 0.57 2E-05 37.7 3.1 28 1-28 92-119 (137)
114 3q7r_A Transcriptional regulat 81.7 2 7E-05 37.1 5.3 36 6-42 84-119 (121)
115 2zxj_A Transcriptional regulat 76.6 0.58 2E-05 40.1 0.3 50 52-102 13-65 (120)
116 2b4a_A BH3024; flavodoxin-like 74.0 1.1 3.7E-05 36.1 1.3 24 18-41 108-131 (138)
117 3q9v_A DNA-binding response re 56.9 1.8 6.2E-05 37.2 -0.6 35 68-102 55-89 (133)
118 3zq7_A KDP operon transcriptio 55.8 2.2 7.4E-05 34.3 -0.3 35 68-102 23-57 (102)
119 2z9m_A Response regulator YYCF 49.7 3.2 0.00011 34.5 -0.2 35 68-102 31-65 (120)
120 2jzy_A Transcriptional regulat 49.1 4.1 0.00014 33.6 0.3 34 69-102 24-57 (112)
121 3rjp_A COVR; winged helix-turn 47.6 5 0.00017 31.7 0.7 34 69-102 18-51 (96)
122 2hqn_A Putative transcriptiona 47.6 4.2 0.00015 33.0 0.2 35 68-102 24-58 (109)
123 2hwv_A DNA-binding response re 44.3 6.4 0.00022 33.0 0.8 35 68-102 38-72 (121)
124 2pmu_A Response regulator PHOP 44.0 5.9 0.0002 32.4 0.5 35 68-102 29-63 (110)
125 4g92_A HAPB protein; transcrip 43.4 30 0.001 27.3 4.4 27 379-405 36-63 (64)
126 1gxq_A PHOB, phosphate regulon 41.8 4.7 0.00016 32.6 -0.4 35 68-102 26-60 (106)
127 1opc_A OMPR, OMPRC; transcript 41.4 4.9 0.00017 32.6 -0.3 34 69-102 27-60 (110)
128 2k4j_A Putative transcriptiona 37.4 5.7 0.0002 33.1 -0.5 35 68-102 36-70 (115)
No 1
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.80 E-value=4.5e-09 Score=105.03 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=85.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh--------------------hhCccccccccccchhhc
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR--------------------MLGLAEKNILSYDFDLVA 61 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r--------------------LTgl~nr~iL~~gLdl~L 61 (445)
|+.........++++|++||+.||+...+|..++..++++.+ +|++.|+..|...++..+
T Consensus 231 t~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~D~lTgl~nr~~~~~~l~~~~ 310 (459)
T 1w25_A 231 VDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDSLV 310 (459)
T ss_dssp ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHSSSSCCSTTCCBCTTTCCBCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCccccCcCHHHHHHHHHHHH
Confidence 455666677889999999999999999999999988876532 355666666655555555
Q ss_pred cccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccC
Q 013329 62 SDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSG 115 (445)
Q Consensus 62 d~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~ 115 (445)
....+.+ ..++|+++|+|+||.||++. +|+.+|.+|+.+|..|...+.
T Consensus 311 ~~~~~~~-~~~~l~~idid~fk~iNd~~-----Gh~~gD~~L~~~a~~l~~~~~ 358 (459)
T 1w25_A 311 KRATLGG-DPVSALLIDIDFFKKINDTF-----GHDIGDEVLREFALRLASNVR 358 (459)
T ss_dssp HHHHTSS-CCCEEEEEEETTHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhhcC-CcEEEEEEEchhhchhhhcc-----ChhhHHHHHHHHHHHHHHhCC
Confidence 5443333 36889999999999999999 788999999999999988764
No 2
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=98.54 E-value=4.2e-08 Score=94.22 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH----------------------------------hhhC
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR----------------------------------RMLG 46 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~----------------------------------rLTg 46 (445)
+|+..+......++++||++||.||++..+|+.+|+.+++.. .+|+
T Consensus 99 ~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~D~lTg 178 (358)
T 3bre_A 99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTG 178 (358)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCTTTC
T ss_pred EeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 467778888899999999999999999999999998764210 1123
Q ss_pred ccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhccc
Q 013329 47 LAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTS 114 (445)
Q Consensus 47 l~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~ 114 (445)
+.++..|...+...+....+. ...++|+++|+|+|+.+|+.. ++..+|.+|+.+|..|...+
T Consensus 179 l~nr~~~~~~l~~~~~~~~~~-~~~~~l~~idid~fk~ind~~-----G~~~gD~~L~~va~~l~~~~ 240 (358)
T 3bre_A 179 LSNRRHFDEYLEMEWRRSLRE-QSQLSLLMIDVDYFKSYNDTF-----GHVAGDEALRQVAGAIREGC 240 (358)
T ss_dssp SBCHHHHHHHHHHHHHHHHHH-TCCEEEEEEEETTHHHHHHHH-----CHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEEchhhhHHHHhc-----ChHHHHHHHHHHHHHHHHhc
Confidence 333332222222222221111 236789999999999999987 67889999999998887654
No 3
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=98.26 E-value=8.1e-07 Score=81.64 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=72.6
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCc-cccccccccchhhcccccc---CCCCeEEEEe
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGL-AEKNILSYDFDLVASDPSD---ANTNSTTLFS 76 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl-~nr~iL~~gLdl~Ld~asr---~n~~slaLL~ 76 (445)
+|+..+.....+++++||++||.||++.++|+.+|+.++++...... .....+..+ +..++.... ..+..+.|+.
T Consensus 101 lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LT~ 179 (250)
T 3r0j_A 101 LTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFA-DIELDEETHEVWKAGQPVSLSP 179 (250)
T ss_dssp EECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHCC------CCEEEET-TEEEETTTCCEEETTEEECCCH
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccceEEEEC-CEEEeccccEEEECCEEEecCH
Confidence 46777888899999999999999999999999999999987532111 011111111 222222111 1234567899
Q ss_pred ecccchhhhhcCCCcccChHHHHhhc
Q 013329 77 DDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 77 lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+++.+.++..++++++|++++.+..
T Consensus 180 rE~~iL~~l~~~~~~~~s~~~i~~~l 205 (250)
T 3r0j_A 180 TEFTLLRYFVINAGTVLSKPKILDHV 205 (250)
T ss_dssp HHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCceEcHHHHHHHH
Confidence 99999999999999999999999875
No 4
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=97.77 E-value=1.3e-05 Score=74.25 Aligned_cols=94 Identities=28% Similarity=0.318 Sum_probs=69.1
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhccccc---cCCCCeEEEEee
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPS---DANTNSTTLFSD 77 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~as---r~n~~slaLL~l 77 (445)
+|+..+.+...+++++||++||.||++.++|+.+|+.++++...... ... +..++... ........|+..
T Consensus 114 lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~LT~r 186 (249)
T 3q9s_A 114 LTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESL------SMG-DLTLDPQKRLVTYKGEELRLSPK 186 (249)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCE------EET-TEEEETTTTEEEETTEEECCCHH
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCce------eEC-CEEEecccCEEEECCEEeecCHH
Confidence 46777888899999999999999999999999999998865431110 000 11111111 112234568889
Q ss_pred cccchhhhhcCCCcccChHHHHhh
Q 013329 78 DTDDKSRRSTNPEIGMSTHQETES 101 (445)
Q Consensus 78 DLD~FKlINdn~g~vvSreQl~d~ 101 (445)
+++.+.++..++++++|+.++.+.
T Consensus 187 E~evL~ll~~g~~~~~s~~eIa~~ 210 (249)
T 3q9s_A 187 EFDILALLIRQPGRVYSRQEIGQE 210 (249)
T ss_dssp HHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCceEcHHHHHHH
Confidence 999999999999999999999985
No 5
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=97.61 E-value=3.9e-05 Score=68.35 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEee
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSD 77 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~l 77 (445)
+|+..+.+...+++++||++||.||++.++|..+|+.++++.. . ..+..+ .+.++.... ..+....|+..
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~r 149 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK--K----GLYDFG-DLKIDATGFTVFLKGKRIHLPKK 149 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC--C----SEEEET-TEEEETTTTEEEETTEECCCCHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc--c----cCcccc-cEEEECCCCEEEECCEEEecCHH
Confidence 3566778888999999999999999999999999999987643 0 111101 111111110 11223457888
Q ss_pred cccchhhhhcCCCcccChHHHHhhc
Q 013329 78 DTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 78 DLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+++.+.++..++++++|+.++.+..
T Consensus 150 E~~vl~~l~~~~~~~~s~~~Ia~~l 174 (220)
T 1p2f_A 150 EFEILLFLAENAGKVVTREKLLETF 174 (220)
T ss_dssp HHHHHHHHHHTTTSCEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCceEcHHHHHHHH
Confidence 8999999999999999999998875
No 6
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=97.57 E-value=3.6e-05 Score=68.50 Aligned_cols=98 Identities=22% Similarity=0.282 Sum_probs=69.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEee
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSD 77 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~l 77 (445)
+|+..+......++++||++||.||++.++|..+|+.++++..... ...+..+ ++.++.... .......|+..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~r 155 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESK---STKLVCG-DLILDTATKKAYRGSKEIDLTKK 155 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSC---SSEEEET-TEEEETTTTEEEETTEEECCCHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhccccc---CceEEEC-CEEEecccCEEEECCEEEecCHH
Confidence 3566777788899999999999999999999999999988754211 1111111 111111111 12224567888
Q ss_pred cccchhhhhcCCCcccChHHHHhhc
Q 013329 78 DTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 78 DLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+.+.+..+..+++.++|+.++.+..
T Consensus 156 E~~vL~~l~~~~~~~~s~~eIa~~l 180 (225)
T 1kgs_A 156 EYQILEYLVMNKNRVVTKEELQEHL 180 (225)
T ss_dssp HHHHHHHHHHTTTSCEEHHHHHHHC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHh
Confidence 8999999999999999999999875
No 7
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=97.53 E-value=4.1e-05 Score=68.38 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEe
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFS 76 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPf-d~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~ 76 (445)
+|+..+.+....++++||++||.||+ +.++|..+|+.++++.. ...+..+ ...++.... .++....|+.
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~ 146 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWG------SNVIEIG-DLTISPDEEKIIYKGREVEVKG 146 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCC------CCSEEET-TEEEETTTTEEEETTEEECCCS
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcccc------CCeEEEC-CEEEecccCEEEECCEEEecCH
Confidence 46777888889999999999999999 99999999999876530 0111111 111111111 1223456888
Q ss_pred ecccchhhhhcCCCcccChHHHHhhc
Q 013329 77 DDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 77 lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+++.+.++..+++.++|+.++.+..
T Consensus 147 rE~~vL~~l~~~~~~~~s~~~Ia~~l 172 (223)
T 2hqr_A 147 KPFEVLTHLARHRDQIVSKEQLLDAI 172 (223)
T ss_dssp TTTHHHHHHHHTCSEEEEHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCCHHHHHHHh
Confidence 89999999999999999999999985
No 8
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=97.48 E-value=2.1e-05 Score=70.33 Aligned_cols=100 Identities=27% Similarity=0.260 Sum_probs=67.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++.++|..+|+.++++...........+..+ .+.++...+ .+.....|+..+
T Consensus 86 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~rE 164 (233)
T 1ys7_A 86 SARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVG-PLEVDIPGRRARVNGVDVDLTKRE 164 (233)
T ss_dssp ECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEET-TEEEETTTTEEEETTEECCCCHHH
T ss_pred EcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccC-CeEEccCccEEEECCEEeccCHHH
Confidence 4455555667789999999999999999999999999987542111101111111 111111111 112234588889
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+.+.++..+++.++|+.++.+..
T Consensus 165 ~~vL~~l~~g~~~~~s~~~Ia~~l 188 (233)
T 1ys7_A 165 FDLLAVLAEHKTAVLSRAQLLELV 188 (233)
T ss_dssp HHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEcHHHHHHHh
Confidence 999999999999999999998874
No 9
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=97.41 E-value=3e-05 Score=70.44 Aligned_cols=97 Identities=25% Similarity=0.280 Sum_probs=67.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCccccccccccchhhcccccc---CCCCeEEEEeec
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSD---ANTNSTTLFSDD 78 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~nr~iL~~gLdl~Ld~asr---~n~~slaLL~lD 78 (445)
|+..+......++++||++||.||++.++|+.+|+.++++... . ....+..+ ++.++...+ .......|+..+
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~LT~rE 158 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD--E-PAEMLSIA-DVEIDVPAHKVTRNGEQISLTPLE 158 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSS--C-CCCEEEET-TEEEETTTTEEEETTEEECCCHHH
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhccc--C-cccceecC-ceEEcccccEEEECCEEcccCHHH
Confidence 4455556678899999999999999999999999988765421 1 11111111 111111111 122245688889
Q ss_pred ccchhhhhcCCCcccChHHHHhhc
Q 013329 79 TDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 79 LD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++.+.++..++++++|+.++.+..
T Consensus 159 ~~vL~~l~~~~~~~~s~~eIa~~l 182 (238)
T 2gwr_A 159 FDLLVALARKPRQVFTRDVLLEQV 182 (238)
T ss_dssp HHHHHHHHHSTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHCCCceecHHHHHHHH
Confidence 999999999999999999999875
No 10
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=97.36 E-value=4.4e-05 Score=68.35 Aligned_cols=100 Identities=23% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhhhCcc-ccccccccchhhcccccc---CCCCeEEEEee
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLA-EKNILSYDFDLVASDPSD---ANTNSTTLFSD 77 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rLTgl~-nr~iL~~gLdl~Ld~asr---~n~~slaLL~l 77 (445)
|+..+......++++||++||.||++.++|..+|+.++++....... ....+..+ .+.++.... .++....|+..
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Lt~r 160 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESG-PVRMDVERHVVSVNGDTITLPLK 160 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEET-TEEEETTTTEEEESSBCCCCCHH
T ss_pred eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeec-CEEEeccccEEEECCeeeecCHH
Confidence 55666777888999999999999999999999999998764210100 01111111 111111110 11223468888
Q ss_pred cccchhhhhcCCCcccChHHHHhhc
Q 013329 78 DTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 78 DLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+++.+.++..++++++|+.++.+..
T Consensus 161 E~~vL~~l~~~~~~~~s~~~Ia~~l 185 (230)
T 2oqr_A 161 EFDLLEYLMRNSGRVLTRGQLIDRV 185 (230)
T ss_dssp HHHHHHHHHHTTTSCEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEcHHHHHHHh
Confidence 9999999999999999999998864
No 11
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=97.24 E-value=0.00018 Score=58.04 Aligned_cols=41 Identities=39% Similarity=0.505 Sum_probs=35.6
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+..+.....+++++||++||.||++.++|+.+|+.++++
T Consensus 79 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 79 LTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 35667777888999999999999999999999999988753
No 12
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.21 E-value=0.0003 Score=57.02 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=35.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 40 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~Lr 40 (445)
+|+..+.....+++++||++||.||++.++|..+|+++++
T Consensus 82 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 82 LTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3667778888999999999999999999999999998763
No 13
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=97.18 E-value=9.7e-05 Score=67.17 Aligned_cols=66 Identities=21% Similarity=0.144 Sum_probs=52.8
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.||+++|+..|...++..+.... ...++|+++|+|+||.||+.. +++.+|.+|+.+|..|...+..
T Consensus 8 ~LTgL~NR~~f~~~l~~~l~~~~---~~~~~l~~iDiD~FK~INd~~-----Gh~~GD~vL~~va~~L~~~~~~ 73 (179)
T 3tvk_A 8 VLTGLPGRRVLDESFDHQLRNAE---PLNLYLMLLDIDRFKLVNDTY-----GHLIGDVVLRTLATYLASWTRD 73 (179)
T ss_dssp TTTCSCBHHHHHHHHHHHHHTCT---TSEEEEEEEEETTHHHHHHHH-----CHHHHHHHHHHHHHHHHHTSCT
T ss_pred cccCchhHHHHHHHHHHHHHhcC---CCCEEEEEEECCCCcHHHhcc-----CchhHHHHHHHHHHHhHhcCCc
Confidence 36888888877666555554422 236899999999999999999 6889999999999999987754
No 14
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=97.17 E-value=0.00035 Score=57.66 Aligned_cols=43 Identities=30% Similarity=0.521 Sum_probs=36.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.....+++++||++||.||++.++|+.+|+.++++..
T Consensus 84 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 84 LTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 3667778888899999999999999999999999999987653
No 15
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=97.12 E-value=0.00048 Score=56.04 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=35.6
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 40 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~Lr 40 (445)
+|+..+.....+++++||++||.||++.++|..+|+.++.
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 87 ITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 3667778888899999999999999999999999998874
No 16
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=97.10 E-value=0.00073 Score=53.55 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+.....++++.|+++||.||++.++|..+|+.++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 56667778889999999999999999999999999988764
No 17
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=97.06 E-value=0.0007 Score=53.89 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=36.1
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......++++|+++||.||++.++|..+|+.++++.
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 56667777889999999999999999999999999988764
No 18
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=97.04 E-value=0.00087 Score=53.78 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+.....++++.|+++||.||++.++|..+|+.++++.
T Consensus 86 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 86 TAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 56667778889999999999999999999999999988654
No 19
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=96.99 E-value=0.001 Score=54.32 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=37.3
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.....+++++||++||.||++..+|..+|+.++++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 3566777788899999999999999999999999999887653
No 20
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=96.99 E-value=0.00091 Score=53.30 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=35.7
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......++++|+++||.||++.++|..+|+.++++.
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 55667777888999999999999999999999999988653
No 21
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=96.94 E-value=0.00084 Score=52.94 Aligned_cols=40 Identities=40% Similarity=0.480 Sum_probs=34.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+..+......++++|+++||.||++.++|..+|+.++++
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 79 SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred ecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 5566677788899999999999999999999999988754
No 22
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=96.94 E-value=0.0011 Score=52.35 Aligned_cols=41 Identities=39% Similarity=0.461 Sum_probs=36.0
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+.....++++.|+++||.||++.++|..+|+.++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 56667777889999999999999999999999999988653
No 23
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=96.92 E-value=0.0011 Score=54.30 Aligned_cols=43 Identities=21% Similarity=0.432 Sum_probs=38.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||++||.||++.++|+.+|++++....
T Consensus 86 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 86 MASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 3567778888999999999999999999999999999987654
No 24
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.89 E-value=0.0014 Score=54.17 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.+....+++.||++||.||++.++|..+|+.++++.+
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 556677788899999999999999999999999999887653
No 25
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=96.89 E-value=0.0013 Score=54.06 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPf-d~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||++||.||+ +.++|..+|+.++++..
T Consensus 87 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 87 LTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp EETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 35667788888999999999999999 99999999999998764
No 26
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=96.88 E-value=0.0014 Score=53.67 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=38.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHhh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRM 44 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~rL 44 (445)
+|+..+.....+++++||++||.||++.++|..+|+.++++.++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 35667777888999999999999999999999999999987653
No 27
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=96.88 E-value=0.00098 Score=53.64 Aligned_cols=41 Identities=17% Similarity=0.456 Sum_probs=35.7
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+..+.....++++.||++||.||++.++|..+|+.++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 35667777888999999999999999999999999988754
No 28
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=96.87 E-value=0.0014 Score=53.97 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......+++.||++||.||++.++|..+|+.++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 55667778889999999999999999999999999988764
No 29
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=96.83 E-value=0.0012 Score=53.08 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=36.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+..+.....++++.|+++||.||++.++|..+|+.++++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 46677778888999999999999999999999999988754
No 30
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=96.81 E-value=0.0015 Score=53.16 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||++||.||++..+|..+|+.+++...
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHh
Confidence 4667778888899999999999999999999999999987754
No 31
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=96.80 E-value=0.0015 Score=53.25 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+..+.....+++++||++||.||++.++|..+|+.+++.
T Consensus 90 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 90 SGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp ESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred eCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 5666777788899999999999999999999999887643
No 32
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.80 E-value=0.0018 Score=52.09 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=37.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.+...+++++|+++||.||++.++|...|+.++++..
T Consensus 92 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 92 STSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 556677788899999999999999999999999999987754
No 33
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=96.79 E-value=0.0017 Score=54.21 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=36.0
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+.....++++.||++||.||++.++|..+|+.+++..
T Consensus 98 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 98 TTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 56667778889999999999999999999999999987654
No 34
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=96.76 E-value=0.0012 Score=54.15 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=35.7
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+..+.....+++++||++||.||++.++|...|+.++..
T Consensus 87 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 87 LTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 46777788889999999999999999999999999887643
No 35
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=96.75 E-value=0.0013 Score=52.18 Aligned_cols=38 Identities=24% Similarity=0.539 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMW 39 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~L 39 (445)
|+..+.....++++.|+++||.||++.++|..+|+.++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 82 SAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 56667778889999999999999999999999998764
No 36
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=96.74 E-value=0.00096 Score=54.67 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=36.8
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||++||.||++.++|..+|+.++++..
T Consensus 87 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 87 ATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp EESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 3566778888999999999999999999999999999987653
No 37
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=96.71 E-value=0.0015 Score=53.34 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=35.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.....++++.||++||.||++.++|..+|+.+++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 83 VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 356677778889999999999999999999999999887543
No 38
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.70 E-value=0.0023 Score=52.19 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+......+++.|+++||.||++.++|...|+.++++..
T Consensus 99 t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 99 TTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 556677888899999999999999999999999999987753
No 39
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=96.67 E-value=0.0021 Score=52.22 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.....+++++|+++||.||++.++|..+|+.++++..
T Consensus 91 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 91 TGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred eCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 556677778899999999999999999999999999987653
No 40
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=96.67 E-value=0.0019 Score=54.35 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.....+++++||++||.||++..+|+.+|+.++...+
T Consensus 88 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 88 TILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp ECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred ECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 566777888899999999999999999999999999997754
No 41
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=96.66 E-value=0.00092 Score=54.11 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=35.6
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+.....+++++||++||.||++.++|..+|+.++++.
T Consensus 84 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 84 TAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 55667778889999999999999999999999999987653
No 42
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=96.65 E-value=0.0022 Score=52.74 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+......++++|+++||.||++..+|..+|+.++++.+
T Consensus 89 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 89 SGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 566677788899999999999999999999999999987654
No 43
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=96.65 E-value=0.0026 Score=53.13 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=38.4
Q ss_pred CCCCCcHHHHHHHHHcC-CcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaG-AdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.....++++.| |++||.||++..+|..+|+.++++.+
T Consensus 92 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 46677788889999999 99999999999999999999998764
No 44
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=96.57 E-value=0.0012 Score=57.75 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=38.2
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||++||.||++.++|..+|+.++.+..
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 4677888889999999999999999999999999998887653
No 45
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=96.56 E-value=0.0026 Score=51.62 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+......+++.|+++||.||++.++|..+|+.+++...
T Consensus 89 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 89 TSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp ECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 566677788899999999999999999999999999987654
No 46
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=96.53 E-value=0.0021 Score=53.49 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=34.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+|+..+.+...+++++||++||.||++.++|+..|+.++..
T Consensus 96 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 96 LSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 35667778888999999999999999999999999887644
No 47
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=96.53 E-value=0.003 Score=51.26 Aligned_cols=42 Identities=29% Similarity=0.509 Sum_probs=35.5
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+...+++++|+++||.||++.++|..+|++++...
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 356677788889999999999999999999999999887543
No 48
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=96.51 E-value=0.0024 Score=53.15 Aligned_cols=42 Identities=12% Similarity=0.284 Sum_probs=37.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+...+++++||++||.||++.++|..+|+.+++..
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 356677788889999999999999999999999999988654
No 49
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=96.50 E-value=0.0008 Score=53.76 Aligned_cols=40 Identities=33% Similarity=0.445 Sum_probs=34.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+..+.....++++.|+++||.||++.++|..+|+.++++
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 83 TARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 4555666778889999999999999999999999988765
No 50
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=96.47 E-value=0.0038 Score=51.93 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=37.0
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.....+++++|+++||.||++.++|...|+.+.+...
T Consensus 95 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 95 LTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3566777888899999999999999999999999999876543
No 51
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=96.46 E-value=0.0037 Score=52.17 Aligned_cols=42 Identities=21% Similarity=0.481 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+......+++.|+++||.||++..+|...|+.++++.+
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 82 TGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp ECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 455667778899999999999999999999999999987654
No 52
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=96.45 E-value=0.0032 Score=52.40 Aligned_cols=43 Identities=30% Similarity=0.435 Sum_probs=37.2
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.....+++++||++||.||++.++|..+|+.++.+..
T Consensus 95 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 3566777888899999999999999999999999999987643
No 53
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=96.43 E-value=0.0022 Score=51.24 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=34.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 40 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~Lr 40 (445)
+|+..+.....++++.|+++||.||++.++|..+|+.+++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 3566677788899999999999999999999999987653
No 54
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=96.42 E-value=0.0014 Score=52.15 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 40 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~Lr 40 (445)
|+..+......+++.|+++||.||++..+|..+|+.++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 82 TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp C------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred ECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 455556667788999999999999999999999988764
No 55
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=96.42 E-value=0.0026 Score=51.98 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.+....+++.|+++||.||++.++|..+|+.++++.+
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 82 SAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp ESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred ECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 556677788899999999999999999999999999987643
No 56
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=96.41 E-value=0.0029 Score=55.36 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+....+++.|+++||.||++..+|...|+.++.+.
T Consensus 85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 467777888899999999999999999999999999988654
No 57
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=96.40 E-value=0.0019 Score=52.16 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+... ..+++.|+++||.||++.++|+.+|+.++.+..
T Consensus 84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 84 SGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp ESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred eCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 44445555 788999999999999999999999999998764
No 58
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=96.39 E-value=0.0021 Score=51.75 Aligned_cols=42 Identities=31% Similarity=0.452 Sum_probs=33.4
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPf-d~eELLaRVra~LrR~ 42 (445)
+|+..+.....++++.|+++||.||+ +.++|...|+.++.+.
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 35667777888999999999999999 8999999999888653
No 59
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=96.37 E-value=0.0011 Score=54.42 Aligned_cols=42 Identities=31% Similarity=0.473 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.+...+++++||++||.||++.++|..+|+.++++..
T Consensus 83 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 445555666778999999999999999999999999998764
No 60
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=96.36 E-value=0.0041 Score=51.81 Aligned_cols=42 Identities=10% Similarity=0.248 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHHcC-CcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaG-AdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.....++++.| +++||.||++.++|..+|+.++++.+
T Consensus 83 s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 83 TGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp ECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 5566777888999999 99999999999999999999998754
No 61
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.34 E-value=0.0037 Score=55.29 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=37.2
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.+....++++||++||.||++..+|..+|+.++++.
T Consensus 85 ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 85 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp EECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 356677888899999999999999999999999999988754
No 62
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=96.30 E-value=0.0022 Score=51.95 Aligned_cols=41 Identities=37% Similarity=0.462 Sum_probs=34.0
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......++++|+++||.||++..+|..+|+.++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 82 TAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp ECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 44445555678899999999999999999999999988654
No 63
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=96.26 E-value=0.0027 Score=51.46 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......++++|+++||.||++..+|..+|+.++++.
T Consensus 87 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 87 TAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred ECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 45566777889999999999999999999999999988654
No 64
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=96.25 E-value=0.002 Score=52.64 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=34.6
Q ss_pred CCCCcHHHHH-HHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVV-KCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iv-eALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+..... .++++|+++||.||++.++|..+|+.++++..
T Consensus 87 s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 87 SANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp CTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred ecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 4444444555 78899999999999999999999999998764
No 65
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=96.24 E-value=0.0017 Score=53.85 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.....++++.|+++||.||++..+|...|+.++++..
T Consensus 84 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 84 SGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp CCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 455555566788999999999999999999999999887653
No 66
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=96.22 E-value=0.00094 Score=55.03 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=34.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.+...+++++||++||.||++.++|..+|+.++++.+
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 444444555678899999999999999999999999998765
No 67
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=96.21 E-value=0.0016 Score=52.54 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.....++++.|+++||.||++.++|..+|+.++++..
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 81 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp ECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred eCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 455566677889999999999999999999999999886643
No 68
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=96.10 E-value=0.0027 Score=55.92 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=36.7
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+.+....+++.||++||.||++..+|..+|+.++++.+
T Consensus 92 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 92 TAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp EEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 556677778889999999999999999999999999987653
No 69
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=96.10 E-value=0.0076 Score=50.17 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=36.4
Q ss_pred CCCCcHHHHHHHHHcC-CcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRLG-AADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALeaG-AdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+......+++.| +++||.||++..+|...|+.++++.+
T Consensus 86 s~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 86 SGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp ECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 5556677788899998 99999999999999999999987654
No 70
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=96.03 E-value=0.0053 Score=49.39 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 7 VSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 7 ~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
.....+++++|+++||.||++.++|+.+|+..+..
T Consensus 91 ~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 91 KAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp SHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 33677899999999999999999999999887754
No 71
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=96.03 E-value=0.0071 Score=49.50 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHHc-CCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 2 SAQDEVSVVVKCLRL-GAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 2 TA~~d~e~iveALea-GAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
|+..+......++.. ||++||.||++..+|..+|+.+++...
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 455566667778876 599999999999999999999887643
No 72
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=96.02 E-value=0.0041 Score=51.77 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......++++|+++||.||++..+|..+|+.++++.
T Consensus 86 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 86 TMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp ESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred ECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 55667778889999999999999999999999999887654
No 73
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=95.97 E-value=0.0029 Score=55.63 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=51.0
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhccc
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTS 114 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~ 114 (445)
.+|+++|+..|...++..+......+ ..++|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+
T Consensus 34 ~lTgL~Nr~~f~~~l~~~~~~~~~~~-~~~~l~~idid~f~~in~~~-----G~~~gd~~L~~ia~~L~~~~ 99 (206)
T 3i5c_A 34 GLTGLSNRRHFDEYLEMEWRRSLREQ-SQLSLLMIDVDYFKSYNDTF-----GHVAGDEALRQVAGAIREGC 99 (206)
T ss_dssp TTTCSBCHHHHHHHHHHHHHHHHHHT-CCEEEEEEEETTHHHHHHHH-----CHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEECcchhHHHhcc-----ChhHHHHHHHHHHHHHHHhc
Confidence 35778887777665555554433333 36889999999999999998 67899999999999998755
No 74
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=95.94 E-value=0.00091 Score=52.88 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......+++.|+++||.||++.++|..+|+.++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 44455556667889999999999999999999999988653
No 75
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=95.92 E-value=0.0029 Score=55.52 Aligned_cols=41 Identities=22% Similarity=0.485 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......+++.||++||.||++.++|..+|+.++++.
T Consensus 83 s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 83 TAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp ESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 45556666788999999999999999999999999998764
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.90 E-value=0.0064 Score=60.62 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=38.8
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||++||.||++.++|+..|+.++....
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 4777888889999999999999999999999999999987754
No 77
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=95.87 E-value=0.0079 Score=59.88 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+.....+++++||++||.||++..+|+.+|+.+++..
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999999999999988754
No 78
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=95.86 E-value=0.00062 Score=58.29 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=52.7
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|+++|+..|...++..+....+.+ ..++|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+.+
T Consensus 15 ~lTgL~Nr~~f~~~l~~~~~~~~~~~-~~~~l~~idid~f~~in~~~-----G~~~gd~~L~~ia~~L~~~~~~ 82 (167)
T 3qyy_A 15 PLTEALNRRGCEQAMRDSVTAAQREG-WPFVLFVLDMDNLKPINDRF-----GHLAGDRVLVRLVESAYGWLGA 82 (167)
T ss_dssp TTTCSBCHHHHHHHHHHHHHHHHHHC-CCCEEEEEEESSHHHHHHHH-----CHHHHHHHHHHHHHHHTTTCCT
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhhC-CcEEEEEEechhhhHHHhhc-----CcHHHHHHHHHHHHHHHHhcCC
Confidence 56788888777666565555443333 36789999999999999998 6789999999999999877643
No 79
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=95.75 E-value=0.0015 Score=53.39 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 3 AQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 3 A~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+..+......++++|+++||.||++.++|..+|+.++++.+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 89 AKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp CTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 33444455667899999999999999999999999998765
No 80
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=95.74 E-value=0.002 Score=55.00 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=52.3
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+|++.|+..|...+...+....+.. ..++|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 4 lTgL~Nr~~f~~~l~~~l~~~~~~~-~~~~l~~i~id~f~~in~~~-----G~~~gd~~L~~~a~~L~~~~~~ 70 (171)
T 3icl_A 4 VTGLPNRQLFCDRLLQALAAHERDG-NPVVLLFLDVDNFKSINDSL-----GHLVGDRLLRATAERIRTAVRD 70 (171)
T ss_dssp TTCCCCHHHHHHHHHHHHHHCCCTT-SCCEEEEEEETTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHSCT
T ss_pred ccCCccHHHHHHHHHHHHHHHHhcC-CcEEEEEEEChHhhHHHHHh-----ChHHHHHHHHHHHHHHHHhcCC
Confidence 5777777777665555555544333 36789999999999999998 6788999999999999987754
No 81
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.72 E-value=0.0024 Score=57.40 Aligned_cols=41 Identities=5% Similarity=0.004 Sum_probs=35.3
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......++++||++||.||+++++|..+|+.++++.
T Consensus 90 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 90 NCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp EECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred ECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 55566667788899999999999999999999999998754
No 82
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=95.67 E-value=0.0053 Score=51.00 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+|+..+......+++.|+++||.||++.++|...|+.++++.
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 84 ISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp C-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 355566677888999999999999999999999999988654
No 83
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.66 E-value=0.0084 Score=59.97 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...++++.||+|||.|||+.++|..+|+++++...
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120 (387)
T ss_dssp EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 4677788889999999999999999999999999999987654
No 84
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=95.65 E-value=0.0023 Score=55.65 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=55.3
Q ss_pred HHHHHhhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 38 MWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 38 ~LrR~rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+...=.+|++.|+..|...++..+.... ...++|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 6 ~a~~D~lTgL~Nr~~f~~~l~~~~~~~~---~~~~~l~~idid~f~~in~~~-----G~~~gd~lL~~ia~~L~~~~~~ 76 (178)
T 3mtk_A 6 LAFYDELTGLPNKNSLIRWLNLKVSQMD---CIDTYLIFLEVRDLEKLNVTY-----GYDLVDELIIHISKRIKDIAGE 76 (178)
T ss_dssp HHHBCTTTCSBCHHHHHHHHHHHHHSSC---CTTEEEEEEEETTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHCS
T ss_pred HhHcCcccCCccHHHHHHHHHHHHHhcc---CCceEEEEEEhhHhhHHHHHh-----ChHHHHHHHHHHHHHHHHhcCC
Confidence 3333457888888877766665555433 346889999999999999998 6888999999999999887644
No 85
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=95.47 E-value=0.013 Score=46.18 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=30.5
Q ss_pred cHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Q 013329 6 EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWR 40 (445)
Q Consensus 6 d~e~iveALeaGAdDYLtKPfd~eELLaRVra~Lr 40 (445)
+......+++.|+++||.||++..+|..+|+.+++
T Consensus 90 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 90 DGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp GGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 44566788999999999999999999999988764
No 86
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=95.47 E-value=0.0024 Score=54.98 Aligned_cols=68 Identities=19% Similarity=0.106 Sum_probs=52.5
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|++.|+..|...++..+....+.+ ..++|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 12 ~lTgL~Nr~~f~~~l~~~~~~~~~~~-~~~~l~~i~id~f~~in~~~-----G~~~gd~~L~~ia~~L~~~~~~ 79 (177)
T 3ign_A 12 RLTGLLNRGTWENLVDAEYERFRRYG-QATSLVMFDIDHFKPVNDTY-----GHLAGDEVIRHTADVTRNNIRQ 79 (177)
T ss_dssp TTTCSEEHHHHHHHHHHHHHHHHHHC-CCEEEEEEEETTHHHHHHHH-----CHHHHHHHHHHHHHHHHTTSCT
T ss_pred CccCCCcHHHHHHHHHHHHHHHHhhC-CceEEEEEEchhhHHHHHhh-----ChHHHHHHHHHHHHHHHHhCCC
Confidence 45778887777665555555433333 36889999999999999988 6789999999999999887654
No 87
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=95.43 E-value=0.0035 Score=50.27 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=29.9
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+... ..++..|+++||.||++.++|+.+|+..+...
T Consensus 84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 84 SGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp ECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 33444444 67889999999999999999999998876553
No 88
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=95.40 E-value=0.015 Score=47.27 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHM 38 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~ 38 (445)
|+..+......++++|+++||.||++.++|+.++...
T Consensus 96 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 96 TAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp ESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 4556677888999999999999999999999886554
No 89
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=95.37 E-value=0.0026 Score=54.63 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=53.8
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|+++|+..|...++..+....+.+ ..++|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 17 ~lTgL~Nr~~f~~~l~~~~~~~~~~~-~~~~l~~i~id~f~~in~~~-----G~~~gd~~L~~~a~~L~~~~~~ 84 (177)
T 3hva_A 17 PVTGLYNRSHFLDLMDAAVQQAVTAR-KPSTLAYIHLNGYPSLQADH-----GLSGIDLLLGQLAGLMREQFGE 84 (177)
T ss_dssp TTTCSEEHHHHHHHHHHHHHHHHHTC-CCEEEEEEEETTHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHGG
T ss_pred cccccchHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCCHHHHHHHh-----CchhHHHHHHHHHHHHHHhCCC
Confidence 46788888777666565555543333 37899999999999999988 7889999999999999887754
No 90
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=95.37 E-value=0.022 Score=46.43 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=31.5
Q ss_pred HHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 9 VVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 9 ~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
...++++.|+++||.||++..+|...|+.+++..+
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 95 HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999987764
No 91
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=95.28 E-value=0.0049 Score=60.68 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=49.7
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|++.|+..|...++..+....+.. ..++|+++|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 186 ~LTGL~NR~~f~~~l~~~l~~~~~~~-~~~all~idId~fk~INd~~-----G~~~gD~lL~~va~~L~~~~~~ 253 (342)
T 3ezu_A 186 ALTGVMTRAGFFKTVGSLAYAAQRSG-SNVGIMLIDLDYFKLVGDNY-----GHQTGDRILQLVAETITSHLRR 253 (342)
T ss_dssp TTTCSBCHHHHHHHHHHHHHHHHHHT-CEEEEEEEEEEECCCCC----------CHHHHHHHHHHHHHHHTCCT
T ss_pred CCCCcCCHHHHHHHHHHHHHHhhhcC-CcEEEEEEECCcHHHHHHhh-----ChHHHHHHHHHHHHHHHHHCCC
Confidence 46888888877666666655444433 37899999999999999999 6778999999999999887754
No 92
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=95.27 E-value=0.0076 Score=48.34 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 8 SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 8 e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
+...+++.+|+++||.||++.++|...|+.++..
T Consensus 92 ~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 92 ETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp HHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 5566788999999999999999999999887654
No 93
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=95.00 E-value=0.018 Score=56.51 Aligned_cols=43 Identities=40% Similarity=0.489 Sum_probs=35.2
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPL-RTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPf-d~eELLaRVra~LrR~r 43 (445)
+|+..+.+...++++.||++||.||+ ..++|...|+.++++..
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRAY 126 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhhh
Confidence 57778888899999999999999999 68899999999887653
No 94
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=94.68 E-value=0.019 Score=46.94 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
|+.........++.+|+++||.||++.++|..+|+.++.+
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 3444444444556677899999999999999999988754
No 95
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=94.65 E-value=0.0053 Score=55.34 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRR 43 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~r 43 (445)
+|+..+.+...+++++||++||.||++.++|..+|+.++++..
T Consensus 81 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 81 LTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp GGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 4667778888999999999999999999999999999987653
No 96
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=94.36 E-value=0.0073 Score=60.44 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHhhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 37 HMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 37 a~LrR~rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+...=.+|+++|+..|...++..+....... ...+|+++|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 11 ~~a~~D~LTGL~NR~~f~~~l~~~l~~~~~~~-~~~~l~~idid~fk~iNd~~-----G~~~gD~lL~~va~~L~~~~~~ 84 (437)
T 3hvb_A 11 EVSSQDPVTGLYNRSHFLDLMDAAVQQAVTAR-KPSTLAYIHLNGYPSLQADH-----GLSGIDLLLGQLAGLMREQFGE 84 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccCcccCCccHHHHHHHHHHHHHHHhhcC-CceEEEEEEcCcHHHHHHhh-----CchhHHHHHHHHHHHHHHhCCC
Confidence 33333467889898888766666665543322 36789999999999999999 6778999999999999887654
No 97
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=94.32 E-value=0.0069 Score=49.93 Aligned_cols=38 Identities=16% Similarity=-0.054 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Q 013329 4 QDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 4 ~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR 41 (445)
..+.+...+++++||++||.||++..+|..+++.....
T Consensus 98 ~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~l 135 (145)
T 3kyj_B 98 VSGSPHAARARELGADGVVAKPSGTVSHDLEEKTGGEL 135 (145)
T ss_dssp STTSSHHHHHHHTTCSCCCBCCCSCC------CTTHHH
T ss_pred cCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 44455677899999999999999988888776654443
No 98
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=94.02 E-value=0.012 Score=64.07 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=35.8
Q ss_pred CCCCc-HHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHHHHHH
Q 013329 2 SAQDE-VSVVVKCLRLGAADYLVKPLRTNE-LLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d-~e~iveALeaGAdDYLtKPfd~eE-LLaRVra~LrR~ 42 (445)
|+..+ .++++.++..||+|||+|||+..| |++||+++++|.
T Consensus 92 Ta~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 92 GDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp ECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred ecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 45555 667788999999999999999999 999999999886
No 99
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=93.95 E-value=0.024 Score=56.60 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=53.3
Q ss_pred hhhCccccccccccchhhccccccCCCCeEEEEeecccchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 43 RMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 43 rLTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
.+|++.|+..|...++..+..... .....|+.+|+|+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 22 ~LTGL~NR~~f~~~l~~~~~~~~~--~~~~~l~~idid~fk~iNd~~-----G~~~gD~lL~~va~~L~~~~~~ 88 (430)
T 3pjx_A 22 NLTGLANRRYFEMQLNARVSNPEQ--ASSGYLLLLRVKDLAGLNQRL-----GGQRTDELLKAVGEQLSRECAK 88 (430)
T ss_dssp TTTSSBCHHHHHHHHHHTTTCTTS--CSCEEEEEEEETTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCccHHHHHHHHHHHHhhccc--cCceEEEEEEchhhhHHHHhc-----ChHHHHHHHHHHHHHHHHHHHh
Confidence 678999988877666665554322 235679999999999999998 6889999999999999876654
No 100
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=93.24 E-value=0.013 Score=50.96 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=45.7
Q ss_pred hhCccccccccccchhhccccccCCCCeEEEEeecc---cchhhhhcCCCcccChHHHHhhcchhhhhhhhcccCC
Q 013329 44 MLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDT---DDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGT 116 (445)
Q Consensus 44 LTgl~nr~iL~~gLdl~Ld~asr~n~~slaLL~lDL---D~FKlINdn~g~vvSreQl~d~~l~~~A~~~a~~~~~ 116 (445)
+|+++|+..|...++..+.. ....+|+.+++ |+|+.||+.. +++.+|.+|+.+|..|...+..
T Consensus 5 lTgL~Nr~~f~~~l~~~~~~-----~~~~~l~~i~i~~id~f~~in~~~-----G~~~gD~~L~~ia~~L~~~~~~ 70 (176)
T 3hvw_A 5 PTGLYNRLRLQEDVSLRLQR-----DGALTVIAADLLPLALLNTIIRTL-----GYPFSNDLMLEARDRIRAELPD 70 (176)
T ss_dssp ----CCHHHHHHHHHHHHHH-----HSEEEEEEEECSCHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCChhHHHHHHHHHHHHhc-----CCCceEEEEEecCHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHCCC
Confidence 56777776665554444433 23577888888 9999999998 7788999999999999887764
No 101
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=92.91 E-value=0.044 Score=42.90 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.3
Q ss_pred HHHHHcCCcEEEECCCCHHHHHHHHHHHH
Q 013329 11 VKCLRLGAADYLVKPLRTNELLNLWTHMW 39 (445)
Q Consensus 11 veALeaGAdDYLtKPfd~eELLaRVra~L 39 (445)
..+++.|+++||.||++.++|..+|+.++
T Consensus 87 ~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 87 SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 45678999999999999999999998764
No 102
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=92.16 E-value=0.064 Score=53.17 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 8 SVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 8 e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
....+++++||++||.|||+.++|...|+.++...
T Consensus 95 ~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 95 ISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp HHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 56678899999999999999999999999998764
No 103
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=92.01 E-value=0.079 Score=33.40 Aligned_cols=17 Identities=47% Similarity=0.735 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhcccC.....
Q 013329 361 RREAALIKFRQKRKERC..... 377 (445)
Q Consensus 361 ~R~~~~~ry~eKr~~R~..... 377 (445)
.|.+.|+||.||||.|.
T Consensus 5 aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hHHHHHHHHHHHhhccC.....
Confidence 49999999999999874
No 104
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=91.68 E-value=0.09 Score=41.89 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=29.6
Q ss_pred CCCCcHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 2 SAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 2 TA~~d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
|+..+......++..| +||.||++.++|..+|++++...
T Consensus 86 s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 86 SGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp ESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred eCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 4444555556666665 79999999999999999988654
No 105
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=91.05 E-value=0.16 Score=41.34 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=23.9
Q ss_pred HcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 15 RLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 15 eaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
.+|+++||.||++.++|...|+.++...
T Consensus 104 ~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 104 GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 6799999999999999999999887543
No 106
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=90.41 E-value=0.026 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.8
Q ss_pred HHHcCCcEEEECCCCHHHHHHHHHHHH
Q 013329 13 CLRLGAADYLVKPLRTNELLNLWTHMW 39 (445)
Q Consensus 13 ALeaGAdDYLtKPfd~eELLaRVra~L 39 (445)
+.++|+++||+|||++++|.++|++++
T Consensus 94 ~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 94 DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 346799999999999999999887654
No 107
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=90.20 E-value=0.064 Score=41.18 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHHHcCCcEEEECCCCHHHHHHHHHHHH
Q 013329 12 KCLRLGAADYLVKPLRTNELLNLWTHMW 39 (445)
Q Consensus 12 eALeaGAdDYLtKPfd~eELLaRVra~L 39 (445)
.+++.|+++||.||++..+|..+|+.++
T Consensus 89 ~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 89 PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 6788999999999999999999887654
No 108
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=90.06 E-value=0.077 Score=33.82 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhcccCCCc
Q 013329 362 REAALIKFRQKRKERCFDK 380 (445)
Q Consensus 362 R~~~~~ry~eKr~~R~f~k 380 (445)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999987654
No 109
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=88.77 E-value=0.077 Score=45.06 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.5
Q ss_pred HHHHHHHcCCcEEEECCCCHHHHHHHH
Q 013329 9 VVVKCLRLGAADYLVKPLRTNELLNLW 35 (445)
Q Consensus 9 ~iveALeaGAdDYLtKPfd~eELLaRV 35 (445)
...+++++||++||.||++..+|..++
T Consensus 114 ~~~~~~~~ga~~~l~KP~~~~~l~~r~ 140 (164)
T 3t8y_A 114 ITIEALRNGAVDFITKPHGSISLTFRQ 140 (164)
T ss_dssp HHHHHHHTTCCEEEECSSSSSCGGGGG
T ss_pred HHHHHHHcCcCEEEeCCCCHHHHHHHh
Confidence 566899999999999999998887655
No 110
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=88.74 E-value=0.5 Score=43.89 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRT 28 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~ 28 (445)
+|+..+.+...+++++||+|||+||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 4788889999999999999999999643
No 111
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=88.19 E-value=0.36 Score=47.76 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCcEEEECCCCH---------HHHHHHHHHHHH
Q 013329 8 SVVVKCLRLGAADYLVKPLRT---------NELLNLWTHMWR 40 (445)
Q Consensus 8 e~iveALeaGAdDYLtKPfd~---------eELLaRVra~Lr 40 (445)
+...++++.||+|||.||++. ++|+.+|+.+++
T Consensus 91 ~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~ 132 (349)
T 1a2o_A 91 EVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (349)
T ss_dssp HHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHh
Confidence 447889999999999999984 667777766654
No 112
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=85.86 E-value=0.39 Score=42.35 Aligned_cols=37 Identities=16% Similarity=0.456 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHcCCcEEEECC--CCHHHHHHHHHHHHHH
Q 013329 5 DEVSVVVKCLRLGAADYLVKP--LRTNELLNLWTHMWRR 41 (445)
Q Consensus 5 ~d~e~iveALeaGAdDYLtKP--fd~eELLaRVra~LrR 41 (445)
...+...++++.|+++||.|| ++..+|+..+...+..
T Consensus 63 ~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 63 GQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp STHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTG
T ss_pred CCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCC
Confidence 346778899999999999999 7888888888776643
No 113
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=85.06 E-value=0.57 Score=37.72 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.2
Q ss_pred CCCCCcHHHHHHHHHcCCcEEEECCCCH
Q 013329 1 MSAQDEVSVVVKCLRLGAADYLVKPLRT 28 (445)
Q Consensus 1 LTA~~d~e~iveALeaGAdDYLtKPfd~ 28 (445)
+|+..+......+++.|+++||.||+..
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l~kP~~~ 119 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYIAKPYRS 119 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCSC
T ss_pred EeCCCCHHHHHHHHHcCCceeeeCCCCC
Confidence 3566677888899999999999999753
No 114
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=81.68 E-value=2 Score=37.09 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.4
Q ss_pred cHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Q 013329 6 EVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRR 42 (445)
Q Consensus 6 d~e~iveALeaGAdDYLtKPfd~eELLaRVra~LrR~ 42 (445)
+++..++.++.||. ||..|+.+..|-+.|++.|+..
T Consensus 84 ~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 84 DEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp CHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 56788899999999 9999999999999999988753
No 115
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=76.62 E-value=0.58 Score=40.05 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=39.3
Q ss_pred cccccchhhccccccC---CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 52 ILSYDFDLVASDPSDA---NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 52 iL~~gLdl~Ld~asr~---n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
.+..+ ++.++...+. ++..+.|+..+++.|..+..|+++++|+++|++.+
T Consensus 13 ~l~~g-~l~ld~~~~~v~~~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~v 65 (120)
T 2zxj_A 13 EITIK-DIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTV 65 (120)
T ss_dssp CEEET-TEEEEGGGTEEEETTEEECCCHHHHHHHHHHHTTTTCCBCHHHHHHHH
T ss_pred eEEEc-CEEEECCCCEEEECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHh
Confidence 34445 5555554432 45688899999999999999999999999999975
No 116
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=73.96 E-value=1.1 Score=36.08 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.1
Q ss_pred CcEEEECCCCHHHHHHHHHHHHHH
Q 013329 18 AADYLVKPLRTNELLNLWTHMWRR 41 (445)
Q Consensus 18 AdDYLtKPfd~eELLaRVra~LrR 41 (445)
+++||.||++.++|..+|+.++++
T Consensus 108 ~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 108 NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred HHheeeCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999877643
No 117
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=56.90 E-value=1.8 Score=37.25 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=31.3
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..|+++++|+++|++.+
T Consensus 55 ~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~v 89 (133)
T 3q9v_A 55 KGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEI 89 (133)
T ss_dssp TTEECCCCHHHHHHHHHHTTSTTCEEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCCCceEcHHHHHHHH
Confidence 44567889999999999999999999999999975
No 118
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=55.85 E-value=2.2 Score=34.26 Aligned_cols=35 Identities=11% Similarity=-0.047 Sum_probs=31.1
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..|+++++|++++.+.+
T Consensus 23 ~~~~i~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~v 57 (102)
T 3zq7_A 23 GEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 57 (102)
T ss_dssp TTEEECCCHHHHHHHHHHHHTTTCEEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCCCeeECHHHHHHHh
Confidence 34577889999999999999999999999999975
No 119
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=49.69 E-value=3.2 Score=34.54 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=31.3
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..|+++++|+++|++.+
T Consensus 31 ~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~v 65 (120)
T 2z9m_A 31 RGEDIELTHREFELFHYLSKHMGQVMTREHLLQTV 65 (120)
T ss_dssp TTEEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHH
T ss_pred CCEEEeCCHHHHHHHHHHHHCCCceEcHHHHHHHH
Confidence 44577899999999999999999999999999975
No 120
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=49.09 E-value=4.1 Score=33.63 Aligned_cols=34 Identities=6% Similarity=-0.171 Sum_probs=30.5
Q ss_pred CCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 69 TNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 69 ~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+..+.|...++..|..+..++++++|+++|.+.+
T Consensus 24 g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~v 57 (112)
T 2jzy_A 24 GKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLV 57 (112)
T ss_dssp TEECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred CEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHh
Confidence 3467788999999999999999999999999986
No 121
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=47.63 E-value=5 Score=31.70 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=30.8
Q ss_pred CCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 69 TNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 69 ~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+..+.|...+++.|..+..|+++++|++++.+.+
T Consensus 18 ~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 51 (96)
T 3rjp_A 18 DDEISLTKREYDLLNILMTNMNRVMTREELLSNV 51 (96)
T ss_dssp TEEEECCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred CEEEEcCHHHHHHHHHHHhCCCeeEcHHHHHHHH
Confidence 4467889999999999999999999999999975
No 122
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=47.58 E-value=4.2 Score=32.98 Aligned_cols=35 Identities=6% Similarity=0.017 Sum_probs=31.3
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..|+++++|+++|.+.+
T Consensus 24 ~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 58 (109)
T 2hqn_A 24 KGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAI 58 (109)
T ss_dssp TTEEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHH
Confidence 34577899999999999999999999999999986
No 123
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=44.28 E-value=6.4 Score=33.03 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=31.2
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..++++++|+++|.+.+
T Consensus 38 ~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~v 72 (121)
T 2hwv_A 38 RGEKIELTHREFELLYYLAKHIGQVMTREHLLQTV 72 (121)
T ss_dssp TTEEEECCHHHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHHcCCeEEcHHHHHHHH
Confidence 34577889999999999999999999999999976
No 124
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=43.98 E-value=5.9 Score=32.40 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=31.1
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..|+++++|++++.+.+
T Consensus 29 ~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 63 (110)
T 2pmu_A 29 AGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV 63 (110)
T ss_dssp TTEEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHHHHCCCEEEcHHHHHHHH
Confidence 34467889999999999999999999999999985
No 125
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=43.39 E-value=30 Score=27.26 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.0
Q ss_pred CcccchhhhhhhhhhCCC-CCcceeccc
Q 013329 379 DKKIRYVNRKRLAERRPR-VRGQFVRKV 405 (445)
Q Consensus 379 ~kkirY~~RK~~A~~RpR-vkGrFvk~~ 405 (445)
.|+.-+++|-..|-.|+| -.|||.+..
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 356779999999999999 789998754
No 126
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=41.75 E-value=4.7 Score=32.63 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=30.8
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..|+++++|++++.+.+
T Consensus 26 ~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~v 60 (106)
T 1gxq_A 26 GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 60 (106)
T ss_dssp TTEECCCCHHHHHHHHHHHHSCSSEECHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHH
Confidence 33466788999999999999999999999999986
No 127
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=41.42 E-value=4.9 Score=32.63 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=30.5
Q ss_pred CCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 69 TNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 69 ~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
+..+.|...+++.|..+..|+++++|+++|.+.+
T Consensus 27 ~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 60 (110)
T 1opc_A 27 DEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLA 60 (110)
T ss_dssp TEEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHH
T ss_pred CEEEEcCHHHHHHHHHHHHcCCceEcHHHHHHHH
Confidence 3467788999999999999999999999999985
No 128
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=37.41 E-value=5.7 Score=33.06 Aligned_cols=35 Identities=9% Similarity=-0.082 Sum_probs=30.9
Q ss_pred CCCeEEEEeecccchhhhhcCCCcccChHHHHhhc
Q 013329 68 NTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESV 102 (445)
Q Consensus 68 n~~slaLL~lDLD~FKlINdn~g~vvSreQl~d~~ 102 (445)
++..+.|...+++.|..+..++++++|+++|.+.+
T Consensus 36 ~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~v 70 (115)
T 2k4j_A 36 HEKKLDLTRAEYEILSLLISKKGYVFSRESIAIES 70 (115)
T ss_dssp TTEEECSCHHHHHHHHHHHHHCCCEECHHHHHHHT
T ss_pred CCEEEecCHHHHHHHHHHHHcCCcEEcHHHHHHHH
Confidence 34467788899999999999999999999999986
Done!