BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013331
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 59 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
GRTPLH AA G + ++ +L + +G T LHL +N E VK L+E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 178
N D +G T LHLA +V LL+ G DVNA ++ G T L + A+ +G
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL----AARNGH 113
Query: 179 LQIVPALEEAGA 190
L++V L EAGA
Sbjct: 114 LEVVKLLLEAGA 125
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 24 NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 83
NG TPLHL+ GHLE+ + N GRTPLH AA G + ++ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 84 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT 143
+ +G T LHL +N E VK L+E N D +G T LHLA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLE 115
Query: 144 MVIYLLKLG 152
+V LL+ G
Sbjct: 116 VVKLLLEAG 124
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
++VK LLEA + KD NG TPLHL+ GHLE+ + N GRTPLH
Sbjct: 16 EVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLH 73
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
AA G + ++ +L + +G T LHL +N E VK L+E
Sbjct: 74 LAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
+G T LHL +N E VK L+E N D +G T LHLA +V LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 152 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
G DVNA ++ G T L + A+ +G L++V L EAGA
Sbjct: 58 GADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYLMET 115
+G+TPLH AA G ++ +LS Q A+ + G+T LHL +N E VK L
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLS---QGADPNAKDSDGKTPLHLAAENGHKEVVKLL--- 89
Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 175
L+ N D+DG T LHLA +V LL G D N + G T LD+ A
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL----ARE 145
Query: 176 SGALQIVPALEEAGA 190
G ++V LE+ G
Sbjct: 146 HGNEEVVKLLEKQGG 160
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D VK+LLE + D +G TPLHL+ GH E+ + ++G+TPLH
Sbjct: 18 DRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLH 75
Query: 65 WAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 122
AA G ++ +LS Q A+ + G+T LHL +N E VK L L+
Sbjct: 76 LAAENGHKEVVKLLLS---QGADPNAKDSDGKTPLHLAAENGHKEVVKLL---LSQGADP 129
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
N D+DG T L LA +V L K G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
+N + VK L+E N D+DG T LHLA +V LL G D NA +
Sbjct: 11 AAENGNKDRVKDLLEN---GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 160 RKGYTALDVVESDASNSGALQIVPALEEAGA 190
G T L + A+ +G ++V L GA
Sbjct: 68 SDGKTPLHL----AAENGHKEVVKLLLSQGA 94
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
N+G TPLH AA G + I+ E+L N + G T LHL E V+ L++
Sbjct: 45 NDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH- 102
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N DNDG+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N DNDG T LHLA + +V LLK G DVNA + G T L + A+ +G L+IV
Sbjct: 41 NATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL----AAATGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKHGA 104
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
G +L A AG+ + I L+ G DVNA + GYT L + A+++G L+IV L +
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNATDNDGYTPLHL----AASNGHLEIVEVLLKN 69
Query: 189 GAR-RCDQLPPMSP 201
GA L ++P
Sbjct: 70 GADVNASDLTGITP 83
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+GRTPLH+AA G I+ +LS + G T LH +N E VK L L+
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLL---LS 91
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 177
N D+DG T LH A +V LL G D N + G T LD+ A G
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL----AREHG 147
Query: 178 ALQIVPALEEAGA 190
+IV LE+ G
Sbjct: 148 NEEIVKLLEKQGG 160
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D VK+LLE + D +G TPLH + GH EI + ++GRTPLH
Sbjct: 18 DRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLH 75
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
+AA G I+ +LS + G T LH +N E VK L L+ N
Sbjct: 76 YAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLL---LSKGADPNT 131
Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLG 152
D+DG T L LA +V L K G
Sbjct: 132 SDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
+N + VK L+E N D+DG T LH A +V LL G D NA +
Sbjct: 11 AAENGNKDRVKDLLEN---GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 160 RKGYTALDVVESDASNSGALQIVPALEEAGA 190
G T L A+ +G +IV L GA
Sbjct: 68 SDGRTPLHY----AAENGHKEIVKLLLSKGA 94
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
++GRTPLH+AA +G I+ ++S + G T LH K E VK L
Sbjct: 35 SDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLL---- 89
Query: 117 NITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS 174
I+K A N D+DG T LH A +V L+ G DVN + G T LD+ A
Sbjct: 90 -ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL----AR 144
Query: 175 NSGALQIVPALEEAGA 190
G +IV LE+ G
Sbjct: 145 EHGNEEIVKLLEKQGG 160
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D VK+L+E + D +G TPLH + +GH EI + ++GRTPLH
Sbjct: 18 DRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDSDGRTPLH 75
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-- 122
+AA +G I+ ++S + G T LH K E VK L I+K A
Sbjct: 76 YAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLL-----ISKGADV 129
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
N D+DG T L LA +V L K G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
+N + VK L+E N D+DG T LH A +V L+ G DVNA +
Sbjct: 11 AAENGNKDRVKDLIEN---GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 160 RKGYTALDVVESDASNSGALQIVPALEEAGA 190
G T L A+ G +IV L GA
Sbjct: 68 SDGRTPLHY----AAKEGHKEIVKLLISKGA 94
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 72/179 (40%), Gaps = 52/179 (29%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N GHTPLHL+ GHLEI E
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIV-EVLLKYG 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
N G TPLH AA G + I++ +L HG V
Sbjct: 71 ADVNAWDNYGATPLHLAADNGHLEIVEVLLK-----------HGADV------------- 106
Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D +G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 107 -------------NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
G+T LHLA +V LLK G DVNA + G T L + A+++G L+IV L +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHL----AADNGHLEIVEVLLKH 102
Query: 189 GA 190
GA
Sbjct: 103 GA 104
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+G TPLH AA +G + I+ E+L + G T LHL + E V+ L++
Sbjct: 46 DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 102
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D DG T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
IL N + G T LHL + E V+ L++ N D DG T LHLA
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAA 88
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
+V LLK G DVNA ++ GYT L + A+ G L+IV L +AGA
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKAGA 137
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 69
Query: 189 GA 190
GA
Sbjct: 70 GA 71
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
N G TPLH AA+ G + I+ E+L + + ++G T LHL E V+ L L
Sbjct: 45 NTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL---L 100
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D G+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D+ G TPLHL+ GHLEI E G TPLH AA +G + I++ +L
Sbjct: 77 DVYGFTPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVK 110
+ G+T +++ N + K
Sbjct: 136 G-ADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N DN G T LHLA +V LLK G DV+A + G+T L + A+ +G L+IV
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL----AAMTGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKYGA 104
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
+ G+TPLH AAIKG + I+ E+L + G+T LHL E V+ L++
Sbjct: 45 DSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN- 102
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D+ G T LHLA +V LLK G DVNA ++ G T L + A+ G L+IV
Sbjct: 41 NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL----AALYGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKNGA 104
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWA 66
V ELL R NG TPLH++ +L+I + N G TPLH A
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIA 219
Query: 67 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD 126
A + ++ + +L SA ++ G T LHL + E V L L+ N+ +
Sbjct: 220 AKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALL---LSKQANGNLGN 275
Query: 127 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
G T LHL + L+K GV V+A R GYT L V AS+ G +++V
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV----ASHYGNIKLV 327
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 32/223 (14%)
Query: 1 MHVA------DIVKELLE---ARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 51
+HVA DIVK LL + AW NG+TPLH++ + +E+ R
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAW----NGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 52 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 111
+G TPLH AA +G ++ +LS + + G T LHL +
Sbjct: 239 NAESV-QGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 112 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
L++ + + G T LH+A+ +V +LL+ DVNA + GY+ L
Sbjct: 297 LIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL----H 349
Query: 172 DASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPIS 214
A+ G IV L + GA SP+++ G T+P++
Sbjct: 350 QAAQQGHTDIVTLLLKNGA---------SPNEVSSDG-TTPLA 382
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Query: 25 GHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQ 84
GHTPLH++ +GH+E T +G TPLH AA G++ + + +L +
Sbjct: 113 GHTPLHIAAREGHVE-TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 171
Query: 85 SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTM 144
+G T LH+ V +N + VK L+ + P +G T LH+A +
Sbjct: 172 P-NAAGKNGLTPLHVAVHHNNLDIVKLLLPR---GGSPHSPAWNGYTPLHIAAKQNQVEV 227
Query: 145 VIYLLKLGVDVNAINRKGYTALDVVESD 172
LL+ G NA + +G T L + +
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAAQE 255
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Query: 27 TPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSA 86
TPLH++ GHL I + + TPLH AA G + +L N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQ-NKAKV 73
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
+ +T LH + VK L+E N+ G+T LH+A V+
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLEN---NANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 147 YLLKLGVDVNAINRKGYTALDV 168
LL+ + +KG+T L V
Sbjct: 131 ALLEKEASQACMTKKGFTPLHV 152
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+GRTPLH AA G ++ ++S + G T LH +N E VK L
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLL----- 89
Query: 118 ITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 175
I+K A N D+DG T LH A +V L+ G DVN + G T LD+ A
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL----ARE 145
Query: 176 SGALQIVPALEEAGA 190
G ++V LE+ G
Sbjct: 146 HGNEEVVKLLEKQGG 160
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D VK+L+E + D +G TPLH + GH E+ + ++GRTPLH
Sbjct: 18 DRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDSDGRTPLH 75
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-- 122
AA G ++ ++S + G T LH +N E VK L I+K A
Sbjct: 76 HAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLL-----ISKGADV 129
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
N D+DG T L LA +V L K G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
+N + VK L+E N D+DG T LH A +V L+ G DVNA +
Sbjct: 11 AAENGNKDRVKDLIEN---GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 160 RKGYTALDVVESDASNSGALQIVPALEEAGA 190
G T L A+ +G ++V L GA
Sbjct: 68 SDGRTPL----HHAAENGHKEVVKLLISKGA 94
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
N G TPLH AA G + I+ E+L + + + G T LHL E V+ L++
Sbjct: 45 NTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN- 102
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D+DG T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D+ G+TPLHL+ GHLEI E ++G TPLH AA G + I+ E+L
Sbjct: 77 DVFGYTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV-EVLLK 134
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+ + G+T +++ N E + +++ LN
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N DN G T LHLA +V LLK G DV+A + GYT L + A+ G L+IV
Sbjct: 41 NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHL----AAYWGHLEIV 96
Query: 183 PALEEAGAR----RCDQLPPM 199
L + GA D + P+
Sbjct: 97 EVLLKNGADVNAMDSDGMTPL 117
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 59 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
G TPLH AA G + I+ E+L N G T LHL K E V+ L L
Sbjct: 47 GDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL---LKY 102
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D G+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D +G TPLHL+ +GHLEI E G TPLH AA G + I++ +L
Sbjct: 77 DFSGSTPLHLAAKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
+ G+T +++ N + + L
Sbjct: 136 G-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G+T LHLA +V LLK G DVNA++ G T L + A+ G L+IV
Sbjct: 41 NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHL----AAKRGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKYGA 104
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 24 NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 83
NG TPLHL+ GHLE+ + N GRTPLH AA G + ++ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 84 QSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
+ +G T LHL +N E VK L+E
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
+G T LHL +N E VK L+E N D +G T LHLA +V LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 152 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
G DVNA ++ G T L + A+ +G L++V L EAGA
Sbjct: 58 GADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
++VK LLEA + KD NG TPLHL+ GHLE+ + N GRTPLH
Sbjct: 16 EVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLH 73
Query: 65 WAAIKGRINIIDEIL 79
AA G + ++ +L
Sbjct: 74 LAARNGHLEVVKLLL 88
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+G TPLH AA +G + I+ E+L + G T LHL + E V+ L++
Sbjct: 34 DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 177
N D DG T LHLA +V LLK G DVNA ++ G T D+ A ++G
Sbjct: 91 -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL----AIDNG 145
Query: 178 ALQIVPALEEA 188
I L++A
Sbjct: 146 NEDIAEVLQKA 156
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD +G+TPLHL+ +GHLEI E +G TPLH AA +G + I+ E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLL 88
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
+ G T LHL + E V+ L++
Sbjct: 89 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
IL N + G T LHL + E V+ L++ N D DG T LHLA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAA 76
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
+V LLK G DVNA ++ GYT L + A+ G L+IV L +AGA
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKAGA 125
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 57
Query: 189 GA 190
GA
Sbjct: 58 GA 59
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+G TPLH AA +G + I+ E+L + G T LHL + E V+ L L
Sbjct: 34 DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL---LK 89
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
N D DG T LHLA +V LLK G DVNA ++ G T D+
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
IL N + G T LHL + E V+ L L N D DG T LHLA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL---LKAGADVNAKDKDGYTPLHLAA 76
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
+V LLK G DVNA ++ GYT L + A+ G L+IV L +AGA
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKAGA 125
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD +G+TPLHL+ +GHLEI E +G TPLH AA +G + I+ E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV-EVLL 88
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
+ G T LHL + E V+ L++
Sbjct: 89 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 57
Query: 189 GA 190
GA
Sbjct: 58 GA 59
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
++G TPLH AA G I+ E+L + R G T LHL N E V+ L L
Sbjct: 45 DQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL---L 100
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
+D +G TPLHL+ GHLEI E G TPLH AA +G + I+ E+L
Sbjct: 76 RDTDGWTPLHLAADNGHLEIV-EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIV-EVLL 133
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+ + G+T +++ N E + +++ LN
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
IL N G T LHL E V+ L++ N D DG T LHLA
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH---GADVNARDTDGWTPLHLAA 88
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
+V LLK G DVNA + G T L + A++ G L+IV L + GA
Sbjct: 89 DNGHLEIVEVLLKYGADVNAQDAYGLTPLHL----AADRGHLEIVEVLLKHGA 137
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 57/148 (38%), Gaps = 38/148 (25%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
+D G TPLHL+ GHLEI E + G TPLH AA +G + I+ E+L
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV-EVLL 100
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
N HG T LHL K E V+
Sbjct: 101 KNGADVNASDSHGFTPLHLAAKRGHLEIVE------------------------------ 130
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDV 168
LLK G DVNA ++ G TA D+
Sbjct: 131 ------VLLKNGADVNAQDKFGKTAFDI 152
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
+IV+ LL+ + K L G TPLHL+ +GHLEI E + G TPLH
Sbjct: 61 EIVEVLLKNGADVNAKDSL-GVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLH 118
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
AA +G + I+ E+L N + G+T +++ N E + +++ LN
Sbjct: 119 LAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G T LHLA +V LLK G DVNA + G T L + A+ G L+IV
Sbjct: 41 NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHL----AARRGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKNGA 104
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 59 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
G TPLH AA G + I+ E+L N G T LHL E V+ L++
Sbjct: 47 GWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN--- 102
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D++G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 42
+IV+ LL+ + K D NG TPLHL+ ++GHLEI
Sbjct: 94 EIVEVLLKNGADVNAKDD-NGITPLHLAANRGHLEIVE 130
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G T LHLA +V LLK G DVNA + G T L + A++ G L+IV
Sbjct: 41 NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHL----AAHFGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKNGA 104
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D +KE + A + A + D + T LH +CS GH EI E + G +PLH
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLH 78
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLME-------- 114
AA GR I+ +L ++ A + + +G T LH N++E L+E
Sbjct: 79 IAASAGRDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 115 ---------------TLNITKL-------ANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
L + + N+ D +GNT LHLA + +L+ G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 153 VDVNAINRKGYTALDVVE 170
+ N++ T L V +
Sbjct: 196 ASIYIENKEEKTPLQVAK 213
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
LA D D T LH A + T +V +LL+LGV VN + G++ L + A+++G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI----AASAGRDE 87
Query: 181 IVPALEEAGA 190
IV AL GA
Sbjct: 88 IVKALLVKGA 97
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 36 GHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 95
G L+ +E + RT LHWA G I++ +L L + + + G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 75
Query: 96 VLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGV 153
LH+ + E VK L+ K A N + +G T LH A + + + LL+ G
Sbjct: 76 PLHIAASAGRDEIVKALL-----VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 154 DVNAINRKGYTAL 166
+ +A + TA+
Sbjct: 131 NPDAKDHYDATAM 143
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 67 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD 126
A G+++ + E + + A T LH E V++L L + N D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL---LQLGVPVNDKD 70
Query: 127 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
+ G + LH+A + +V LL G VNA+N+ G T L S
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 57/147 (38%), Gaps = 38/147 (25%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D NG TPLHL+ + G LEI E + G TPLH AA G + I++ +L
Sbjct: 36 DDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK- 93
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
HG V N D G T LHLA
Sbjct: 94 ----------HGADV--------------------------NAYDRAGWTPLHLAALSGQ 117
Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDV 168
+V LLK G DVNA + G TA D+
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLTAFDI 144
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 76 DEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
DE+ L A++ +G T LHL N Q E V+ L++ N D+ G T L
Sbjct: 20 DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN---GADVNASDSAGITPL 76
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
HLA +V LLK G DVNA +R G+T L + A+ SG L+IV L + GA
Sbjct: 77 HLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL----AALSGQLEIVEVLLKHGA 129
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 70/179 (39%), Gaps = 52/179 (29%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N G TPLHL + GHLEI E
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYA 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
G TPLH AA +G + I++ +L +G V
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLK-----------YGADV------------- 106
Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 107 -------------NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
G T LHL V N E ++ L L N D G T LHLA +V LLK G
Sbjct: 47 GITPLHLVVNNGHLEIIEVL---LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
DVNA++ +GYT L + A+ G L+IV L + GA
Sbjct: 104 ADVNAMDYQGYTPLHL----AAEDGHLEIVEVLLKYGA 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D +G TPLHL+ +GHLEI E +G TPLH AA G + I++ +L
Sbjct: 77 DKSGWTPLHLAAYRGHLEIV-EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+ G+T +++ N E + +++ LN
Sbjct: 136 G-ADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 59 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
G TPLH AA G + I+ E+L N G T LHL E V+ L++
Sbjct: 47 GWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN--- 102
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D++G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 25 GHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQ 84
G TPLHL+ +GHLE+ E + G TPLH AA G + I+ E+L +
Sbjct: 80 GVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIV-EVLLKHGA 137
Query: 85 SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+ G+T +++ N E + +++ LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D+ G T LHLA +V LLK G DVNA + G T L + A++ G L++V
Sbjct: 41 NASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL----AADRGHLEVV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKNGA 104
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 21 KDLNGHTPLHLSCSKGHLEITR 42
D NG TPLHL+ + GHLEI
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVE 130
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D +G TPLHL+ + GHLEI E G TPLH AA+ G + I++ +L
Sbjct: 44 DASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK- 101
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
HG V N D G+T LHLA
Sbjct: 102 ----------HGADV--------------------------NAVDTWGDTPLHLAAIMGH 125
Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDV 168
+V LLK G DVNA ++ G TA D+
Sbjct: 126 LEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G T LHLA +V LLK G DVNAI+ G T L + A+ G L+IV
Sbjct: 41 NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHL----AALIGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKHGA 104
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-- 115
+G +PLH AA+ GR ++I +L + +A R LHL + ++ VK L+++
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 116 -LNITKLA---------------------------NMPDNDGNTILHLATAGKLTTMVIY 147
N L+ N +N GNT LH A K +V
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203
Query: 148 LLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
LL G V +N++ TA+D E ++ LQ+VP+
Sbjct: 204 LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC 241
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 6 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHW 65
+VK LL++ + KKDL+G+TPL +CS GH E+ N+G T LH
Sbjct: 134 VVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELV-ALLLQHGASINASNNKGNTALHE 191
Query: 66 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
A I+ + ++ E+L L+ S ++ T + +N++ +ME L +
Sbjct: 192 AVIEKHVFVV-ELLLLHGASVQVLNKRQRTAVDCAEQNSK------IMELLQV 237
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 59 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
GRTPLH AA G + I+ E+L N +G T LHL E V+ L L
Sbjct: 35 GRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL---LKY 90
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D G T L+LA +V LLK G DVNA ++ G TA D+
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 79
D NG TPLHL+ S GHLEI E G TPL+ AA G + I++ +L
Sbjct: 65 DTNGTTPLHLAASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
IL N A +G T LH+ E V+ L+ N D +G T LHLA
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN---GADVNAVDTNGTTPLHLAA 76
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
+ +V LLK G DVNA + G T L + A+ G L+IV L + GA
Sbjct: 77 SLGHLEIVEVLLKYGADVNAKDATGITPLYL----AAYWGHLEIVEVLLKHGA 125
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D +G TPLHL+ + GHLEI E G TPLH AA+ G + I++ +L
Sbjct: 44 DASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK- 101
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
HG V N D G+T LHLA
Sbjct: 102 ----------HGADV--------------------------NAVDTWGDTPLHLAAIMGH 125
Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDV 168
+V LLK G DVNA ++ G TA D+
Sbjct: 126 LEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G T LHLA +V LLK G DVNAI+ G T L + A+ G L+IV
Sbjct: 41 NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHL----AALIGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKHGA 104
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+G TPLH AA G + ++LS R+ G T LHL KN E VK L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-- 64
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
N DGNT HLA +V L G DVNA
Sbjct: 65 -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
G T LH KN E VK L L+ N DGNT LHLA +V LL G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL---LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
DVNA ++ G T E A +G +IV L+ GA
Sbjct: 66 ADVNARSKDGNTP----EHLAKKNGHHEIVKLLDAKGA 99
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 24 NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 83
+G+TPLH + GH E ++ +G TPLH AA G I+ +L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 84 QSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
R+ G T HL KN +E VK L
Sbjct: 67 D-VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 128 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 187
DGNT LH A V LL G DVNA ++ G T L + A+ +G +IV L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL----AAKNGHAEIVKLLLA 63
Query: 188 AGA 190
GA
Sbjct: 64 KGA 66
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRT 61
H ++ K L + A KD G+TPLHL+ GH EI + +G T
Sbjct: 21 HAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVK-LLLAKGADVNARSKDGNT 77
Query: 62 PLHWAAIKGRINII 75
P H A G I+
Sbjct: 78 PEHLAKKNGHHEIV 91
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 32/194 (16%)
Query: 7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWA 66
+KE + A + A + D + T LH +CS GH EI E + G +PLH A
Sbjct: 23 LKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIA 81
Query: 67 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET----------- 115
A GR I+ +L Q + +G T LH N++E L+E
Sbjct: 82 ASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 140
Query: 116 -------------------LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 156
L N+ D +GNT LHLA + L+ G +
Sbjct: 141 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 200
Query: 157 AINRKGYTALDVVE 170
N++ T L V +
Sbjct: 201 IENKEEKTPLQVAK 214
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 95 TVLHLTVKNNQYEA-VKYLMETLNITK-LANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
V +L V N Y ++ L E++ K LA D D T LH A + T +V +LL+LG
Sbjct: 5 CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 64
Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 191
V VN + G++ L + A+++G +IV AL GA+
Sbjct: 65 VPVNDKDDAGWSPLHI----AASAGRDEIVKALLGKGAQ 99
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 36 GHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 95
G LE +E + RT LHWA G I++ +L L + + + G +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 76
Query: 96 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 155
LH+ + E VK L L N + +G T LH A + + + LL+ G +
Sbjct: 77 PLHIAASAGRDEIVKAL---LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 156 NAINRKGYTAL 166
+A + TA+
Sbjct: 134 DAKDHYEATAM 144
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 32/194 (16%)
Query: 7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWA 66
+KE + A + A + D + T LH +CS GH EI E + G +PLH A
Sbjct: 22 LKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 67 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET----------- 115
A GR I+ +L Q + +G T LH N++E L+E
Sbjct: 81 ASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 139
Query: 116 -------------------LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 156
L N+ D +GNT LHLA + L+ G +
Sbjct: 140 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 199
Query: 157 AINRKGYTALDVVE 170
N++ T L V +
Sbjct: 200 IENKEEKTPLQVAK 213
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
LA D D T LH A + T +V +LL+LGV VN + G++ L + A+++G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI----AASAGRDE 87
Query: 181 IVPALEEAGAR 191
IV AL GA+
Sbjct: 88 IVKALLGKGAQ 98
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 36 GHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 95
G LE +E + RT LHWA G I++ +L L + + + G +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 75
Query: 96 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 155
LH+ + E VK L L N + +G T LH A + + + LL+ G +
Sbjct: 76 PLHIAASAGRDEIVKAL---LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 156 NAINRKGYTAL 166
+A + TA+
Sbjct: 133 DAKDHYEATAM 143
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 60 RTPLHWAAIKGRINIIDEIL----SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
R+PLH AA G ++I ++ +++ S + RT L +NN EAVKYL++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT-----PLMEAAENNHLEAVKYLIKA 66
Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG-VDVNAINRKGYTAL 166
L + D +G+T LHLA +V YLL G +DVN + G+T +
Sbjct: 67 ---GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Query: 24 NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 83
N +PLH + GH++I ++ RTPL AA + + ++
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLIKAGA 68
Query: 84 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT 143
+ + G T LHL K YE V+YL+ + N D+ G T + AT K
Sbjct: 69 L-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVD 125
Query: 144 MVIYLLKLGVDVN 156
+V LL G D+N
Sbjct: 126 LVKLLLSKGSDIN 138
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 4/169 (2%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G T LHL+ KGH E+ + + G TP+ WA ++++ +LS
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
+R LH + + + L+ N+ G++ LH+A
Sbjct: 133 KG-SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH---GDSPLHIAAREN 188
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG 189
V+ L DV N++G T L ++ ALQ+ AL+++
Sbjct: 189 RYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D +KE + A + A + D + T LH +CS GH EI E + G +PLH
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLH 78
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLME-------- 114
AA G I+ +L ++ A + + +G T LH N++E L+E
Sbjct: 79 IAASAGXDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 115 ---------------TLNITKL-------ANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
L + + N+ D +GNT LHLA + +L+ G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 153 VDVNAINRKGYTALDVVE 170
+ N++ T L V +
Sbjct: 196 ASIYIENKEEKTPLQVAK 213
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
LA D D T LH A + T +V +LL+LGV VN + G++ L + A+++G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI----AASAGXDE 87
Query: 181 IVPALEEAGAR 191
IV AL GA
Sbjct: 88 IVKALLVKGAH 98
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 36 GHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 95
G L+ +E + RT LHWA G I++ +L L + + + G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWS 75
Query: 96 VLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGV 153
LH+ E VK L+ K A N + +G T LH A + + + LL+ G
Sbjct: 76 PLHIAASAGXDEIVKALL-----VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 154 DVNAINRKGYTAL 166
+ +A + TA+
Sbjct: 131 NPDAKDHYDATAM 143
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 67 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD 126
A G+++ + E + + A T LH E V++L L + N D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL---LQLGVPVNDKD 70
Query: 127 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
+ G + LH+A + +V LL G VNA+N+ G T L S
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 41/149 (27%)
Query: 21 KDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPLHWAAIKGRINII 75
+D G+TPLHL+C +G L +T+ N G T LH A+I G + I+
Sbjct: 71 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 130
Query: 76 DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 135
+ ++SL +G T LHL V L N PD
Sbjct: 131 ELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN-PD--------- 162
Query: 136 ATAGKLTTMVIYLLKLGVDVNAINRKGYT 164
+V LLK G DVN + +GY+
Sbjct: 163 --------LVSLLLKCGADVNRVTYQGYS 183
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 41/149 (27%)
Query: 21 KDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPLHWAAIKGRINII 75
+D G+TPLHL+C +G L +T+ N G T LH A+I G + I+
Sbjct: 74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133
Query: 76 DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 135
+ ++SL +G T LHL V L N PD
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN-PD--------- 165
Query: 136 ATAGKLTTMVIYLLKLGVDVNAINRKGYT 164
+V LLK G DVN + +GY+
Sbjct: 166 --------LVSLLLKCGADVNRVTYQGYS 186
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 38/148 (25%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
+D +G TPLHL+ GHLEI E + G TPL AA+ G + I++ +L
Sbjct: 43 EDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
+G V N D +G+T LHLA
Sbjct: 102 -----------NGADV--------------------------NANDMEGHTPLHLAAMFG 124
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDV 168
+V LLK G DVNA ++ G TA D+
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G T LHLA +V LLK G DVNA++ G T L + A+ G L+IV
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL----AALFGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKNGA 104
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
G T LHL + E V+ L++ N DNDG+T LHLA +V LLK G
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKH---GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
DVNA ++ G TA D + D N +I+ L
Sbjct: 104 ADVNAQDKFGKTAFD-ISIDNGNEDLAEILQKL 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N G+TPLHL+ HLEI E
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIV-EVLLKHG 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
N+G TPLH AA+ G + I+ E+L + + G+T +++ N E +
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
+++ LN
Sbjct: 129 AEILQKLN 136
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D +G TPLHL+ GHLEI E N G TPLH AAI+G + I+ E+L
Sbjct: 44 DEDGLTPLHLAAQLGHLEIV-EVLLKYGADVNAEDNFGITPLHLAAIRGHLEIV-EVLLK 101
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+ + G+T +++ N E + +++ LN
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 76 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
DE+ L A++ + G T LHL + E V+ L L N DN G T L
Sbjct: 28 DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL---LKYGADVNAEDNFGITPL 84
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
HLA +V LLK G DVNA ++ G TA D + D N +I+ L
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEILQKL 135
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 76 DEILSLNLQSAEMR--TIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTI 132
+E+L L + A++ + G T LH ++ + VK+L+E NI N PDN+G
Sbjct: 54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI----NQPDNEGWIP 109
Query: 133 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
LH A + + YL+ G V A+N +G T LD+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 30/171 (17%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
+++G T LH +C ++++ + NEG PLH AA G ++I + ++S
Sbjct: 70 NVDGLTALHQACIDDNVDMVK-FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS- 127
Query: 82 NLQSAEMRTIHGETVLHLTVK-------------NNQ---YEAVKYLMETLNITK----L 121
Q A + ++ E L + N Q EA + E + + L
Sbjct: 128 --QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185
Query: 122 ANMPDND------GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
+ ND G T LH+A A T ++ L++ DVN + G+T L
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N G TPLHL+ +GHLEI E
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHG 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
+ GRTPLH AA G + I++ +L + G+T +++ N E +
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
+++ LN
Sbjct: 129 AEILQKLN 136
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 76 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
DE+ L A++ + G T LHL K E V+ L++ N D+ G T L
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---GADVNASDSWGRTPL 84
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
HLA +V LL+ G DVNA ++ G TA D+
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N GHTPLHL+ GHLEI E
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNG 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
N GRTPLH AA + I+ E+L + + G+T +++ N +
Sbjct: 71 ADVNATGNTGRTPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 110 KYLME 114
+ L +
Sbjct: 130 EILQK 134
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
IL+ N G T LHL E V+ L++ N N G T LHLA
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN---GADVNATGNTGRTPLHLAA 88
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
+V LLK G DVNA ++ G TA D+
Sbjct: 89 WADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
DLN TPLH + +GHL + + EG + +H AA G +I+ +++
Sbjct: 74 DLNS-TPLHWATRQGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGK 140
Q +M +G T L L+ T N++ N+ D NT LH A
Sbjct: 132 G-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAG 188
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
TT++ LL+ G +V+A N KG +ALD+ +
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAK 218
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
E T LHWAAI RI+++ +S ++ T LH + V LM+
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--- 97
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
++ D +G + +HLA T++V YL+ G DV+ +++ G T L
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N G TPLHL+ +GHLEI E
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHG 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
GRTPLH AA G + I++ +L + G+T +++ N E +
Sbjct: 71 ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
+++ LN
Sbjct: 129 AEILQKLN 136
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 76 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
DE+ L A++ + G T LHL K E V+ L++ N D G T L
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---GADVNASDIWGRTPL 84
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
HLA +V LL+ G DVNA ++ G TA D + D N +I+ L
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEILQKL 135
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N G TPLHL+ +GHLEI E
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHG 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
GRTPLH AA G + I++ +L + G+T +++ N E +
Sbjct: 71 ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
+++ LN
Sbjct: 129 AEILQKLN 136
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 76 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
DE+ L A++ + G T LHL K E V+ L++ N D G T L
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---GADVNARDIWGRTPL 84
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
HLA +V LL+ G DVNA ++ G TA D+
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXXXXXXNEGRTPLH 64
V+ELL ++ +KD +G PLH S S EIT + G TP H
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 65 WAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
A G + ++ + L+ + T G T LHL V +E ++L+E ++
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 166
D LH A + ++ L LG VN +++G+T L
Sbjct: 137 --DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 62 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 121
PLH A ++ + E+L + G LH +V +E +L+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 122 ANMPDNDGNTILHLATA-GKLTTM-VIYLLKLGVDVNAINRKGYTAL 166
+ PD+ G T H+A + G L + +Y L D+N I +G T L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 28 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL--NLQS 85
PLH +C + +E +GR PLHW+ I +LS N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 86 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 145
+ G T H+ E VK L + L N N G T LHLA K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVS 123
Query: 146 IYLLKLGVDV 155
+L++ G V
Sbjct: 124 QFLIENGASV 133
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 7/150 (4%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXX-XXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
D +G TP H++CS G+LE+ + N+G T LH A K + + L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE-VSQFLI 127
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-NMPDNDGNT-ILHLATA 138
N S ++ + LH + ++ L + K A N D G T + H
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 GKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
G V+ + K G + + ++ KG A DV
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXX--XNEGRTPLH 64
V+ELL ++ +KD +G PLH S S EIT + G TP H
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 65 WAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
A G + ++ + L+ + T G T LHL V +E ++L+E ++
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 166
D LH A + ++ L LG VN +++G+T L
Sbjct: 137 --DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 62 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 121
PLH A ++ + E+L + G LH +V +E +L+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 122 ANMPDNDGNTILHLATA-GKLTTM-VIYLLKLGVDVNAINRKGYTAL 166
+ PD+ G T H+A + G L + +Y L D+N I +G T L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 28 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL--NLQS 85
PLH +C + +E +GR PLHW+ I +LS N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 86 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 145
+ G T H+ E VK L + L N N G T LHLA K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVS 123
Query: 146 IYLLKLGVDV 155
+L++ G V
Sbjct: 124 QFLIENGASV 133
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 7/150 (4%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXX-XXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
D +G TP H++CS G+LE+ + N+G T LH A K + + L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE-VSQFLI 127
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-NMPDNDGNT-ILHLATA 138
N S ++ + LH + ++ L + K A N D G T + H
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 GKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
G V+ + K G + + ++ KG A DV
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXX--XNEGRTPLH 64
V+ELL ++ +KD +G PLH S S EIT + G TP H
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 65 WAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
A G + ++ + L+ + T G T LHL V +E ++L+E ++
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 166
D LH A + ++ L LG VN +++G+T L
Sbjct: 137 --DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 62 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 121
PLH A ++ + E+L + G LH +V +E +L+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 122 ANMPDNDGNTILHLATA-GKLTTM-VIYLLKLGVDVNAINRKGYTAL 166
+ PD+ G T H+A + G L + +Y L D+N I +G T L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 28 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL--NLQS 85
PLH +C + +E +GR PLHW+ I +LS N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 86 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 145
+ G T H+ E VK L + L N N G T LHLA K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVS 123
Query: 146 IYLLKLGVDV 155
+L++ G V
Sbjct: 124 QFLIENGASV 133
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 7/150 (4%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXX-XXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
D +G TP H++CS G+LE+ + N+G T LH A K + + L
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE-VSQFLI 127
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-NMPDNDGNT-ILHLATA 138
N S ++ + LH + ++ L + K A N D G T + H
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLC---GLGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 GKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
G V+ + K G + + ++ KG A DV
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 17 FAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX---XXXXXXNEGRTPLHWAAIKGRIN 73
A + D +G TPLH++ +G+L N +TPLH A I +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 74 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTI 132
++ +++ + HG+T HL ++ ++ L+++ L N DG T
Sbjct: 61 VVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 133 LHLATAGKLTTMVIYLLKLGVDVNAINRK 161
LH+A + V LL+ G D++A++ K
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIK 148
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
++P+++G T LH A T +V +L++ GV+VNA + G+T L A++ +Q+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 183 PALEEAGA 190
L E+GA
Sbjct: 120 KFLVESGA 127
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 66 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANM 124
++++G +++ I+ + + G T LH V E VK+L++ +N+ N
Sbjct: 44 SSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----NA 98
Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG-YTALDVVES 171
D+DG T LH A + + +L++ G V A+ TA D E
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
++P+++G T LH A T +V +L++ GV+VNA + G+T L A++ +Q+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 183 PALEEAGA 190
L E+GA
Sbjct: 120 KFLVESGA 127
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 66 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANM 124
++++G +++ I+ + + G T LH V E VK+L++ +N+ N
Sbjct: 44 SSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----NA 98
Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG-YTALDVVES 171
D+DG T LH A + + +L++ G V A+ TA D E
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 72/192 (37%), Gaps = 27/192 (14%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G PLH +CS GH E+T E TPLH AA K R+ + +LS
Sbjct: 87 KDKGGLVPLHNACSYGHYEVT-ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD-------------- 126
+ HG++ + + E + Y + ++ + A D
Sbjct: 146 HGADPT-LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204
Query: 127 ----NDGNTILHLATAG---KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGAL 179
T LH A A K + LL+ G +VN N+ T L V A N
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND--- 261
Query: 180 QIVPALEEAGAR 191
++ L + GA+
Sbjct: 262 -VMEVLHKHGAK 272
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
G T LHL N+ E V+ L++ N D G T LHL +V LLK G
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKN---GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 153 VDVNAINRKGYTALDV 168
DVNA ++ G TA D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G T LHLA +V LLK G DVNAI+ G T L +V + G L+IV
Sbjct: 41 NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLV----AMYGHLEIV 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKHGA 104
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 4 ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
+D+ K+LLEA R A D+N G TPLHL+ HLEI E
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIV-EVLLKNG 70
Query: 50 XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
G TPLH A+ G + I+ E+L + + G+T +++ N E +
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
+++ LN
Sbjct: 129 AEILQKLN 136
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 25 GHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS--LN 82
G +PLHL+ GH T E RTPLH AA +G NI++ +L +
Sbjct: 34 GTSPLHLAAQYGHFSTT-EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 83 LQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
+ + +M + T LH ++N E V+ L++
Sbjct: 93 VNAKDMLKM---TALHWATEHNHQEVVELLIK 121
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 58 EGR--TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
EGR TPLH+AA R+++++ +L + + G LH YE + L++
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
+ +A++ T LH A A + LL+ G D NR G T LD+V+
Sbjct: 100 GAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 79
KD G PLH +CS GH E+ E TPLH AA KG+ I +L
Sbjct: 73 KDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 100 TVKNNQYEAVKYLMETLNITKLANMPDNDG--NTILHLATAGKLTTMVIYLLKLGVDVNA 157
K E VK L ++ N D +G +T LH A ++V YLL+ G DV+A
Sbjct: 17 AAKAGDVETVKKLCTVQSV----NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 158 INRKGYTALDVVESDASNSGALQIVPALEEAGA 190
++ G L +A + G ++ L + GA
Sbjct: 73 KDKGGLVPL----HNACSYGHYEVAELLVKHGA 101
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 58 EGR--TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
EGR TPLH+AA R+++++ +L + + G LH YE + L++
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
+ +A++ T LH A A + LL+ G D NR G T LD+V+
Sbjct: 98 GAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 79
KD G PLH +CS GH E+ E TPLH AA KG+ I +L
Sbjct: 71 KDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 100 TVKNNQYEAVKYLMETLNITKLANMPDNDG--NTILHLATAGKLTTMVIYLLKLGVDVNA 157
K E VK L ++ N D +G +T LH A ++V YLL+ G DV+A
Sbjct: 15 AAKAGDVETVKKLCTVQSV----NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 158 INRKGYTALDVVESDASNSGALQIVPALEEAGA 190
++ G L +A + G ++ L + GA
Sbjct: 71 KDKGGLVPL----HNACSYGHYEVAELLVKHGA 99
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D DG T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 57
Query: 189 GA 190
GA
Sbjct: 58 GA 59
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 21 KDLNGHTPLHLSCSKGHLEI 40
KD +G+TPLHL+ +GHLEI
Sbjct: 31 KDKDGYTPLHLAAREGHLEI 50
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
EG TPL WAA G+I ++ E L N ++ E+ L L + VK L L+
Sbjct: 35 EGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML---LD 90
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D +G T L A G V LL+ G D GY ++D+
Sbjct: 91 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 58 EGR--TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
EGR TPLH+AA R+++++ +L + + G LH YE + L++
Sbjct: 43 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
+ +A++ T LH A A + LL+ G D NR G T LD+V+
Sbjct: 102 GAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 79
KD G PLH +CS GH E+ E TPLH AA KG+ I +L
Sbjct: 75 KDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 100 TVKNNQYEAVKYLMETLNITKLANMPDNDG--NTILHLATAGKLTTMVIYLLKLGVDVNA 157
K E VK L ++ N D +G +T LH A ++V YLL+ G DV+A
Sbjct: 19 AAKAGDVETVKKLCTVQSV----NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 158 INRKGYTALDVVESDASNSGALQIVPALEEAGA 190
++ G L +A + G ++ L + GA
Sbjct: 75 KDKGGLVPL----HNACSYGHYEVAELLVKHGA 103
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
EG TPL WAA G+I ++ E L N ++ E+ L L + VK L L+
Sbjct: 51 EGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML---LD 106
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D +G T L A G V LL+ G D GY ++D+
Sbjct: 107 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 157
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
EG TPL WAA G+I ++ E L N ++ E+ L L + VK L L+
Sbjct: 33 EGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML---LD 88
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
N D +G T L A G V LL+ G D GY ++D+
Sbjct: 89 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 139
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 26 HTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQS 85
HTPL +C G + ++ +P+H AA +G + ++ +++ +
Sbjct: 126 HTPLFNACVSGSWDCVN--LLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GN 182
Query: 86 AEMRTIHGETVLHLTVKNNQYEAVKYLMET---LNITKLANMPDNDGNTILHLATAGKLT 142
+ + H T L+L +N Q VK L+E+ +N K + P LH
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP-------LHAVVRTASE 235
Query: 143 TMVIYLLKLGVDVNAINRKGYTALDVVESDA 173
+ L+ G D A N +G +++V ++
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVPPES 266
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 22 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
D NG+T LH S S + + ++ G +P+ A+ + D+I ++
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL-ATLKTQDDIETV 166
Query: 82 NLQSAEMRTIH------GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 135
LQ + I+ G+T L L V + + + VK L L N+ D+DG+T L
Sbjct: 167 -LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKAL---LACEADVNVQDDDGSTALMC 222
Query: 136 ATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNS 176
A + LL + D++ +R G TAL +V DA S
Sbjct: 223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL-MVALDAGQS 263
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGV-DVNAINRKGYT 164
N+ D++GNT LH + + +V LL GV V+ NR GY+
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYS 147
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D+V++LLE ++++ G TPLH + +I E G TP
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV-ELLLRHGADPVLRKKNGATPFI 97
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
AAI G + ++ LS E +G T + +A+K+L + L
Sbjct: 98 LAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Query: 125 PDND--------GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL--DVVESDAS 174
D ++ A G + + I L ++G DVNA + G AL ++ SD S
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216
Query: 175 NSGAL 179
+ A+
Sbjct: 217 DVEAI 221
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 5/136 (3%)
Query: 25 GHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQ 84
G T L + KGH+E+ + N GR L A + + ++ I L L
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 85 ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
+R G+T L L V+ V+ L+E +I N D+DG T L LA KL
Sbjct: 228 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELKL 285
Query: 142 TTMVIYLLKLGVDVNA 157
+ L K G +
Sbjct: 286 KKIAELLCKRGASTDC 301
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G TPLH +C+ GHL++ E + +PLH AA G ++I+ +LS
Sbjct: 39 KDHAGWTPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
+ G T LH A+IKG I ++ +L N ++ G T LH + + V+ L++
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH- 65
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNS 176
L N ++ LH A +V LL G NA+N G +D + ++ S
Sbjct: 66 --KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS 123
Query: 177 GALQIVPALEEAGA 190
L ++P E+ +
Sbjct: 124 --LLLLPEKNESSS 135
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 61 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET---LN 117
+P+H AA +G + ++ +++ + + + H T L+L +N Q VK L+E+ +N
Sbjct: 103 SPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 173
K + P LH + L+ G D A N +G +++V ++
Sbjct: 162 QGKGQDSP-------LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G TPL+L+ + GHLEI E G TPLH AA G + I E+L
Sbjct: 43 KDEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIA-EVLL 100
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
+ + G+T +++ N E + +++ LN
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGN-EDLAEILQKLN 136
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
N D G T L+LATA +V LLK G DVNA++ G+T L + A+ G L+I
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL----AAFIGHLEIA 96
Query: 183 PALEEAGA 190
L + GA
Sbjct: 97 EVLLKHGA 104
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
IL N + +G T L+L + E V+ L++ N D G T LHLA
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN---GADVNAVDAIGFTPLHLAA 88
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
+ LLK G DVNA ++ G TA D+
Sbjct: 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
D+V++LLE ++++ G TPLH + +I E G TP
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV-ELLLRHGADPVLRKKNGATPFL 77
Query: 65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
AAI G + ++ LS E +G T + +A+K+L + L
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 125 PDND--------GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL--DVVESDAS 174
D ++ A G + + I L ++G DVNA + G AL ++ SD S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 175 NSGAL 179
+ A+
Sbjct: 197 DVEAI 201
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 5/136 (3%)
Query: 25 GHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQ 84
G T L + KGH+E+ + N GR L A + + ++ I L L
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 85 ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
+R G+T L L V+ V+ L+E +I N D+DG T L LA KL
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELKL 265
Query: 142 TTMVIYLLKLGVDVNA 157
+ L K G +
Sbjct: 266 KKIAELLCKRGASTDC 281
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 126 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
D +G+T LHLA +V LL+ G DVNA ++ G TA D+
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 21 KDLNGHTPLHLSCSKGHLEITR 42
KD NG TPLHL+ GHLE+ +
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVK 56
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
+D TPL ++C G +E + EG T L WA R+ I +++LS
Sbjct: 31 RDSYNRTPLMVACMLG-MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN--DGNTILHLATA 138
+ + G+T L ++ E +L+E AN+ D +G T L +A+
Sbjct: 90 KG-SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE-----HGANVNDRNLEGETPLIVASK 143
Query: 139 GKLTTMVIYLLKLGVDVNAINRKGYTA 165
+ +V LL+LG D++A + G TA
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTA 170
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-L 151
GET LHL + ++ +A K L+E + AN+ DN G T LH A + + L++
Sbjct: 58 GETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 152 GVDVNAINRKGYTAL 166
D++A G T L
Sbjct: 115 ATDLDARMHDGTTPL 129
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 20 KKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 79
+ D G T LHL+ + + N GRTPLH AA+ + +IL
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLH-AAVSADAQGVFQIL 110
Query: 80 SLNLQSA-EMRTIHGETVLHLTVKNNQYEAVKYLMETL-NITKLANMPDNDGNTILHLAT 137
N + + R G T L L + AV+ ++E L N N D+ G + LH A
Sbjct: 111 IRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSALHWAA 166
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
A + LLK G + + N + T L
Sbjct: 167 AVNNVDAAVVLLKNGANKDMQNNREETPL 195
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-L 151
GET LHL + ++ +A K L+E + AN+ DN G T LH A + + L++
Sbjct: 57 GETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 152 GVDVNAINRKGYTAL 166
D++A G T L
Sbjct: 114 ATDLDARMHDGTTPL 128
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
G T LH + + VKYL+ K + D DG T + LA +V YL++ G
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNK--DKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 153 VDVNAINRKGYTALDVVESD 172
V A++ +TA + +++
Sbjct: 337 ASVEAVDATDHTARQLAQAN 356
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 50/143 (34%), Gaps = 46/143 (32%)
Query: 92 HGETVLHLTVKNNQYEAVKYLM-----ETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
H TVLH N+ E + L+ E + N D D NT L LA + +V
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 147 YLLKLGVD------------------------------------VNAINRKGYTALDVVE 170
YL K G D + ++R G TAL +V
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIV- 242
Query: 171 SDASNSGALQIVPA--LEEAGAR 191
A N G Q+ A L E GA+
Sbjct: 243 --AHNEGRDQVASAKLLVEKGAK 263
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-L 151
GET LHL + ++ +A K L+E + AN+ DN G T LH A + + L++
Sbjct: 25 GETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 152 GVDVNAINRKGYTAL 166
D++A G T L
Sbjct: 82 ATDLDARMHDGTTPL 96
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 60 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT 119
+PL AA + + + ++L R GET LH+ + EA LME
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 120 KLANMPDN--DGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
M +G T LH+A + +V LL G V+A
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
+++ G V+H + Q + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 147 YLLK-LGVDVNAINRKGYTALDVV 169
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 66 KDRTGFAVIHDAARAGQLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
+ R G+T L + E V +
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 17/202 (8%)
Query: 3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTP 62
A ++ +LL E D G T LHL+ + N GRTP
Sbjct: 29 TAQVISDLLAQGAELNATMDKTGETSLHLAARFA-RADAAKRLLDAGADANSQDNTGRTP 87
Query: 63 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 122
LH A + + +L + R G T L L + A++ ++E L IT A
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR----LAIEGMVEDL-ITADA 142
Query: 123 --NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
N DN G T LH A A T V LL + +A + K T L + A+ G+ +
Sbjct: 143 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL----AAREGSYE 198
Query: 181 IVPALEEAGARR-----CDQLP 197
AL + A R D+LP
Sbjct: 199 ASKALLDNFANREITDHMDRLP 220
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 29 LHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM 88
+H ++G L+ +E G TPL WA+ G I + +L +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHI 64
Query: 89 RTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANMPDNDGNTILHLATAGKLTTMVIY 147
E+ L L + V L+E ++I N+ D +G T L A G V
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDI----NIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 148 LLKLGVDVNAINRKGYTALDVV 169
LL G D+ GYT +D+
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 21 KDLNGHTPLHLSCSKGHLEITR 42
KD NG TPLHL+ GHLE+ +
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVK 74
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 126 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
D +G+T LHLA +V LL+ G DV A ++ G TA D+
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 29 LHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM 88
+H ++G L+ +E G TPL WA+ G I + +L +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHI 64
Query: 89 RTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANMPDNDGNTILHLATAGKLTTMVIY 147
E+ L L + V L+E ++I N+ D +G T L A G V
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDI----NIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 148 LLKLGVDVNAINRKGYTALDVV 169
LL G D+ GYT +D+
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
+ G +PLHWA +GR ++ E+L + + +T LHL + + V+ L++
Sbjct: 37 DHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-- 93
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD 167
N + GN LH A + L+ G V+ N+ G +D
Sbjct: 94 -YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 143
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
HG + LH + + V+ L+ + N D+ T LHLA + +V LL+
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQY 94
Query: 152 GVDVNAINRKGYTAL--------DVVESDASNSGAL 179
D+NA+N G L D V D +GAL
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 27 TPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
TPLHL+ S GH +I ++ + G PLH+A G+ + +++++
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDLVA 126
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 57 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
+ G +PLHWA +GR ++ E+L + + +T LHL + + V+ L++
Sbjct: 32 DHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-- 88
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD 167
N + GN LH A + L+ G V+ N+ G +D
Sbjct: 89 -YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 138
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
HG + LH + + V+ L+ + N D+ T LHLA + +V LL+
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQY 89
Query: 152 GVDVNAINRKGYTAL--------DVVESDASNSGAL 179
D+NA+N G L D V D +GAL
Sbjct: 90 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 27 TPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
TPLHL+ S GH +I ++ + G PLH+A G+ + +++++
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDLVA 121
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
+ P+ +G T LH A G ++V +L+ G +VN+ + G+T L S
Sbjct: 48 SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 66 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM- 124
AA+ G + ++ + + + G T LH + Y V +L IT AN+
Sbjct: 28 AALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFL-----ITAGANVN 81
Query: 125 -PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN-RKGYTALDVVE 170
PD+ G T LH A + T + + L++ G + A G TA + +
Sbjct: 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 147 YLLK-LGVDVNAINRKGYTALDVV 169
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G+ +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 66 KDRTGNAVIHDAARAGFLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
+ R G+T L + E V +
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|2PE3|A Chain A, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|B Chain B, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|C Chain C, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|D Chain D, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
Length = 354
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 98 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
HL +++ + +K + + + + KL GN I H + + ++ K+GV VN
Sbjct: 29 HLGIRDIVVDVLKEVADEVKVDKL-------GNVIAHFKGSSPRIMVAAHMDKIGVMVNH 81
Query: 158 INRKGY 163
I++ GY
Sbjct: 82 IDKDGY 87
>pdb|2WZN|A Chain A, 3d Structure Of Tet3 From Pyrococcus Horikoshii
Length = 354
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 98 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
HL +++ + +K + + + + KL GN I H + + ++ K+GV VN
Sbjct: 29 HLGIRDIVVDVLKEVADEVKVDKL-------GNVIAHFKGSSPRIMVAAHMDKIGVMVNH 81
Query: 158 INRKGY 163
I++ GY
Sbjct: 82 IDKDGY 87
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%)
Query: 94 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 153
E VLHL VK ++ + + + DGNT LH A + LLK
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 154 DVNAINRKGYTALDVV 169
V +N G TALD+
Sbjct: 251 LVGTVNEAGETALDIA 266
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 147 YLLK-LGVDVNAINRKGYTALDVV 169
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 66 KDRTGFAVIHDAARAGFLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
+ R G+T L + E V +
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 147 YLLK-LGVDVNAINRKGYTALDVV 169
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 66 KDRTGFAVIHDAARAGFLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
+ R G+T L + E V +
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDND-GNTILHLATAGKLTTMV 145
E G T LH+ V + E V+ L + N P+ G T LHLA + +++
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDA---GADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 146 IYLLKLGVDVNAINRKGYTAL 166
LLK G D A G T L
Sbjct: 209 ELLLKAGADPTARMYGGRTPL 229
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 90 TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL 149
T G+T LHL V + + +L+ + ++ ++ G T LHLA + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 150 KLGVDVNAINRKGYTAL 166
G V R G+TAL
Sbjct: 66 AAGAGVLVAERGGHTAL 82
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDND-GNTILHLATAGKLTTMV 145
E G T LH+ V + E V+ L + N P+ G T LHLA + +++
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDA---GADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 146 IYLLKLGVDVNAINRKGYTAL 166
LLK G D A G T L
Sbjct: 209 ELLLKAGADPTARMYGGRTPL 229
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 90 TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL 149
T G+T LHL V + + +L+ + ++ ++ G T LHLA + V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 150 KLGVDVNAINRKGYTAL 166
G V R G+TAL
Sbjct: 66 AAGAGVLVAERGGHTAL 82
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%)
Query: 94 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 153
E VLHL VK ++ + + + DGNT LH A + LLK
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 231
Query: 154 DVNAINRKGYTALDVV 169
V +N G TALD+
Sbjct: 232 LVGTVNEAGETALDIA 247
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEN---QADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 147 YLLK-LGVDVNAINRKGYTALDVV 169
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Query: 21 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
KD G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 66 KDRTGFAVIHDAARAGFLD-TLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
+ R G+T L + E V +
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH 134
GE L L Q++ V YL+E + D+ GNT+LH
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
L N D G T LHLA A + LL+ D N + G T L S A G Q
Sbjct: 49 LHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQ 107
Query: 181 IV 182
I+
Sbjct: 108 IL 109
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 20 KKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 79
+ D G T LHL+ + + + N GRTPLH AA+ + +IL
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADANIQD-NMGRTPLH-AAVSADAQGVFQIL 109
Query: 80 SLNLQSA-EMRTIHGETVLHLTVKNNQYEAVKYLMETL-NITKLANMPDNDGNTILHLAT 137
N + + R G T L L + AV+ ++E L N N D+ G + LH A
Sbjct: 110 IRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
A + LLK G + + N + T L
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPL 194
>pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JW7|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JZU|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3K1G|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3KUM|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
Length = 354
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 101 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
VK E +KY+ +N T +A+ D L L G + + I L+K G
Sbjct: 218 VKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCG 269
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH 134
GE L L Q++ V YL+E + D+ GNT+LH
Sbjct: 149 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 190
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 93 GETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTILHLATA 138
GE L L NQ V YL E N K A+M D+ GNT+LH A
Sbjct: 138 GELPLSLAACTNQPHIVNYLTE--NPHKKADMRRQDSRGNTVLHALVA 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,805,886
Number of Sequences: 62578
Number of extensions: 379235
Number of successful extensions: 1409
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 350
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)