BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013332
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 551 bits (1421), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/418 (62%), Positives = 330/418 (78%), Gaps = 9/418 (2%)
Query: 30 EELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKF 89
E+ +QI K L+FAK PE+F WMV IRRKIHENPELG++E ETSKLIR+EL+ +GI Y++
Sbjct: 8 EDTSQIQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRY 67
Query: 90 PVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLG 149
PVA+TGV+GYIGTG+PPFVALRADMDAL ++E VEWEHKSK+ GKMHACGHD HV MLLG
Sbjct: 68 PVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLG 127
Query: 150 AAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVA 209
AAK+L RH ++GT+VL+FQPAEEG GAKKM + GAL+NVEAIFG+H+S+ P G A
Sbjct: 128 AAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAA 187
Query: 210 SRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVL 269
SR G LA G FEAVI GKGGHAAIPQHTIDP+VAAS++++SLQ LVSRE DPLDS+V+
Sbjct: 188 SRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVV 247
Query: 270 TVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEWQVVMKQASVQRCNATVTF 329
TV+K GG AFN+IPDS+TIGGT RAF+ QL+QR++E V+ KQA+V RCNA+V
Sbjct: 248 TVSKVNGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKE--VITKQAAVHRCNASVNL 303
Query: 330 --DDKSFYPVTVNNKNLHEHFQKVAADMLGVQNIKENRPLMGTEDFSFFAEAIPGYFYYL 387
+ + P TVNNK+L++ F+KV D+LG + E P+MG+EDFS+FAE IPG+F L
Sbjct: 304 TPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLL 363
Query: 388 GMNDETKGKFETGHSPYFRVNEDALPYGAALHASLATRYLLENQPKTTLASRSLHDEL 445
GM DET G + + HSP +R+NED LPYGAA+HAS+A +YL E K +++ H+EL
Sbjct: 364 GMQDETNG-YASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKASKGSVS--GFHEEL 418
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 161/410 (39%), Positives = 219/410 (53%), Gaps = 21/410 (5%)
Query: 22 SSDVSLSPEELTQIPVKFLDFAKKPEIFY-WMVNIRRKIHENPELGFQEFETSKLIRAEL 80
SS V L E L F A + F+ ++N RR +HE+PEL FQE ET+K IR L
Sbjct: 8 SSGVDLGTENLY-----FQSNAXADKAFHTRLINXRRDLHEHPELSFQEVETTKKIRRWL 62
Query: 81 DQMGIP-YKFPVAVTGVVGYI-GTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHAC 138
++ I P TGV+ I G P +A+RAD+DAL ++E SKV G HAC
Sbjct: 63 EEEQIEILDVPQLKTGVIAEIKGREDGPVIAIRADIDALPIQEQTNLPFASKVDGTXHAC 122
Query: 139 GHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLH 198
GHD H A ++G A +L R E+KGT+ +FQPAEE GA+K+L+AG L V AIFG H
Sbjct: 123 GHDFHTASIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIFGXH 182
Query: 199 VSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVS 258
PVGT+ + GP A+ FE VI GKGGHA+IP ++IDPI AA +I LQ +VS
Sbjct: 183 NKPDLPVGTIGVKEGPLXASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVS 242
Query: 259 READPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEWQVVMKQA 318
R L + V+++ + + G ++N+IPD GT R F KE+ +Q + E + +
Sbjct: 243 RNISSLQNAVVSITRVQAGTSWNVIPDQAEXEGTVRTFQKEA----RQAVPEHXRRVAEG 298
Query: 319 SVQRCNATVTFDDKSFYPVTVNNKNLHEHFQKVAADMLGVQNI-KENRPLMGTEDFSFFA 377
A F + P +V N + AA LG Q + E P G EDF+ +
Sbjct: 299 IAAGYGAQAEFKWFPYLP-SVQNDGTFLNAASEAAARLGYQTVHAEQSP--GGEDFALYQ 355
Query: 378 EAIPGYFYYLGMNDETKGKFETGHSPYFRVNEDALPYGAALHASLATRYL 427
E IPG+F + G N E H P F ++E+AL + A LA L
Sbjct: 356 EKIPGFFVWXGTNGT-----EEWHHPAFTLDEEALTVASQYFAELAVIVL 400
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 193/381 (50%), Gaps = 13/381 (3%)
Query: 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQP-PFVAL 110
M+ IRR +H++PEL F E ET+K I + + V G+ I +G+P +A+
Sbjct: 16 MIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAI 75
Query: 111 RADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQ 170
RAD DAL + E S+ G MHACGHDAH A +L A+ L + G +V++ Q
Sbjct: 76 RADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQ 135
Query: 171 PAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGK 229
PAEE GGAK M++ G L+ V+ + G+HV S G V RPG FF+ + GK
Sbjct: 136 PAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGK 195
Query: 230 GGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVLTVAKFEGGGAFNIIPDSVTI 289
GGH + P D IVA S + +LQ +VSR P ++ V+T+ F+G G FN+I D V I
Sbjct: 196 GGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEI 255
Query: 290 GGTFRAFSKESIIQLKQRIEEWQVVMKQASVQRCNATVTFDDKSFYPVTVNNKNLHEHFQ 349
G R + + +++ I+ ++ C T+ ++D YP N+ E+
Sbjct: 256 EGDVRGLTDATKATIEKEIKRLSKGLEDMYGVTC--TLEYNDD--YPALYNDPEFTEYVA 311
Query: 350 KVAADM---LGVQNIKENRPLMGTEDFSFFAEAIPGYFYYLGMNDETKGKFETGHSPYFR 406
K + GV+ + P +EDF+++A+ P F Y G E G+ H P F
Sbjct: 312 KTLKEANLDFGVEMCEPQPP---SEDFAYYAKERPSAFIYTGAAVEN-GEIYPHHHPKFN 367
Query: 407 VNEDALPYGAALHASLATRYL 427
++E +L A ++ YL
Sbjct: 368 ISEKSLLISAEAVGTVVLDYL 388
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYK----FPVAVTGVVGYIGTGQP 105
Y + R I + G + ET + G P + F GVV + TG+P
Sbjct: 49 YQLALGRDVIDADSRXGLPDEETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRP 108
Query: 106 -PFVALRADMDALAMEESVEWEHK-------SKVPGKMHACGHDAHVAMLLGAAKMLQVF 157
P +A R D DAL + E + H+ S G HACGHD H A+ LG A +L+ +
Sbjct: 109 GPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAIGLGLAHVLKQY 168
Query: 158 RHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLA 217
++ G I L+FQPAEEG GA+ + AG +++V+ +H+ + P GTV G
Sbjct: 169 AAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAGTVVC-GGDNFX 227
Query: 218 AGGFFEAVINGKGGHA 233
A F+ +G HA
Sbjct: 228 ATTKFDVQFSGVAAHA 243
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 45/299 (15%)
Query: 38 KFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA--VTG 95
+ LD+ + + Y + I +IHE PELG +E S+ + L + + +A TG
Sbjct: 6 QILDYIETNK--YSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATG 63
Query: 96 VVGYIGTG-QPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD-AHVAMLLGAAKM 153
+ +G P + A+ DAL PG HACGH+ A +LGA +
Sbjct: 64 FIATYDSGLDGPAIGFLAEYDAL--------------PGLGHACGHNIIGTASVLGAIGL 109
Query: 154 LQVFRHEIKGTIVLVFQPAEEGG--GGAK-KMLDAGALENVEAIFGLHVSSLFPVGTVAS 210
QV +I G +V++ PAEEGG G AK + AG ++ ++ +H P G
Sbjct: 110 KQVID-QIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIH-----P-GNETY 162
Query: 211 RPGPTLAAGGFFEAVINGKGGHAAIPQ----HTIDPIVAASNVIVSLQHLVSREADPLDS 266
+ TLA + GK HA+ + +D ++ N + L+ + + D
Sbjct: 163 KTIDTLAV-DVLDVKFYGKSAHASENADEALNALDAXISYFNGVAQLRQHIKK-----DQ 216
Query: 267 QVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEEWQVVMKQASVQR-CN 324
+V V +GG A NIIPD RA +++ + L +++ + + + A++Q C+
Sbjct: 217 RVHGVI-LDGGKAANIIPDYTHARFYTRAXTRKELDILTEKVNQ---IARGAAIQTGCD 271
>pdb|3RZA|A Chain A, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
pdb|3RZA|B Chain B, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
Length = 396
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 20/162 (12%)
Query: 145 AMLLGAAKMLQVFRHEI--KGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSL 202
A L ++LQV + + G I V EE G K L++ E ++A FG + +
Sbjct: 132 AGLAAXLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNS---ELLDADFGYAIDAS 188
Query: 203 FPVGT-VASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA 261
VGT V P L A I GK HA+ P+ + I A+ I SR
Sbjct: 189 ADVGTTVVGAPTQXL-----ISAKIIGKTAHASTPKEGVSAINIAAKAI-------SRXK 236
Query: 262 DPLDSQVLT--VAKFEGGGAFNIIPDSVTIGGTFRAFSKESI 301
++ T + KF GG A NI+ D V + R+ E I
Sbjct: 237 LGQVDEITTANIGKFHGGSATNIVADEVILEAEARSHDPERI 278
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 145 AMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG-GAKKMLDAGALENVEAIFGLHVSSLF 203
A++L K+L+ + GTI ++F EE G G++ ++ EA +V S
Sbjct: 125 AVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFE 178
Query: 204 PVGTVASRPGPTLAAGG--FFEAVINGKGGHA-AIPQHTIDPIVAASNVIVSLQHLVSRE 260
P T A +L G + + I GK HA A P+ ++ +V AS++++ + + +
Sbjct: 179 P--TSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMN-IDDK 235
Query: 261 ADPLDSQVLTVAKFEGGGAFNIIPDSVTIGGTFRAFSKESIIQLKQRIEE 310
A L T+AK G NIIP S T+ R E + +EE
Sbjct: 236 AKNLRFN-WTIAK--AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEE 282
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 225 VINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD----PLDSQVLTVAKFEGGGAF 280
+ GK GH A P I+P+ + ++ L V E + P Q+ + G GA
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNING--GTGAT 247
Query: 281 NIIPDSVTIGGTFRAFSKESIIQLKQRI 308
N+IP + + FR ++ + LKQR+
Sbjct: 248 NVIPGELNVKFNFRFSTESTEAGLKQRV 275
>pdb|3GB0|A Chain A, Crystal Structure Of Aminopeptidase Pept (Np_980509.1)
From Bacillus Cereus Atcc 10987 At 2.04 A Resolution
Length = 373
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 14/157 (8%)
Query: 163 GTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFF 222
GTI + EE G K LD E + A +G + S VG + PT A
Sbjct: 131 GTIEFIITVGEESGLVGAKALD---RERITAKYGYALDSDGKVGEIVV-AAPTQAK---V 183
Query: 223 EAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVL-TVAKFEGGGAFN 281
A+I GK HA + P S + ++ + + +DS+ + +FEGG N
Sbjct: 184 NAIIRGKTAHAGVA-----PEKGVSAITIAAKAIAKXPLGRIDSETTANIGRFEGGTQTN 238
Query: 282 IIPDSVTIGGTFRAFSKESI-IQLKQRIEEWQVVMKQ 317
I+ D V I R+ E Q+ + E ++ K+
Sbjct: 239 IVCDHVQIFAEARSLINEKXEAQVAKXKEAFETTAKE 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,933,246
Number of Sequences: 62578
Number of extensions: 538610
Number of successful extensions: 1355
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 13
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)