BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013334
         (445 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TNU|A Chain A, Heterocomplex Of Coil 2b Domains Of Human Intermediate
           Filament Proteins, Keratin 5 (Krt5) And Keratin 14
           (Krt14)
          Length = 131

 Score = 33.1 bits (74), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 13/93 (13%)

Query: 155 KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN---KHQVSLRTTL-NKLKE 210
           K  +LN E+A  +E       LVQ   +++ ELR+T+Q+L    + Q+S++ +L N L+E
Sbjct: 18  KTEELNREVATNSE-------LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEE 70

Query: 211 KTGALDEKFSQTEFDLVQSV-QQNADLRSKIVQ 242
             G    + +Q + +++ SV +Q A LR ++ Q
Sbjct: 71  TKGRYCMQLAQIQ-EMIGSVEEQLAQLRCEMEQ 102


>pdb|2VE7|C Chain C, Crystal Structure Of A Bonsai Version Of The Human Ndc80
           Complex
 pdb|2VE7|D Chain D, Crystal Structure Of A Bonsai Version Of The Human Ndc80
           Complex
 pdb|3IZ0|D Chain D, Human Ndc80 Bonsai Decorated Microtubule
 pdb|3IZ0|F Chain F, Human Ndc80 Bonsai Decorated Microtubule
          Length = 250

 Score = 33.1 bits (74), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 97  CPMN-FTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDK 155
           C +N F   D++ P A RT  FLS I+NF  +++          E       Q     DK
Sbjct: 104 CRVNDFETADILCPKAKRTSRFLSGIINFIHFREA-------CRETYMEFLWQYKSSADK 156

Query: 156 ISQLNA 161
           + QLNA
Sbjct: 157 MQQLNA 162


>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
           Human Plcbeta3
 pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
           Human Plcbeta3
          Length = 1235

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 71  NPDLHVRSVQIMKLYSMVKEVVTTV--NCPMNFTLKDLIRPDATRTEYFLSAILNFCLYK 128
           N D  +    I+K++S  K+ V T   +C + F   + IRPD    E F   +   CL  
Sbjct: 166 NQDGRIPVKNILKMFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCLRP 225

Query: 129 DTKMNLL 135
           D    LL
Sbjct: 226 DIDKILL 232


>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
 pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
          Length = 357

 Score = 28.5 bits (62), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 386 KVEAVVTEVDAITSKTKFV-KESGAAKLQELASKAEEIVEKFQQY 429
           + EA VT+V  ++ K   V  +SGA +L E+  K   +V KF +Y
Sbjct: 92  QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKY 136


>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
           Effector Phospholipase C Beta 3
          Length = 885

 Score = 28.1 bits (61), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 71  NPDLHVRSVQIMKLYSMVKEVVTTV--NCPMNFTLKDLIRPDATRTEYFLSAILNFCLYK 128
           N D  +    I+K++S  K+ V T   +C + F   + IRPD    E F   +   CL  
Sbjct: 164 NQDGRIPVKNILKMFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCLRP 223

Query: 129 DTKMNLL 135
           D    LL
Sbjct: 224 DIDKILL 230


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,822,222
Number of Sequences: 62578
Number of extensions: 346699
Number of successful extensions: 1523
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 110
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)