Query 013334
Match_columns 445
No_of_seqs 220 out of 315
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4438 Centromere-associated 100.0 4.9E-55 1.1E-59 424.9 49.8 427 1-437 1-441 (446)
2 PF03800 Nuf2: Nuf2 family; I 100.0 6.2E-40 1.3E-44 290.0 8.3 140 2-144 5-145 (146)
3 KOG0995 Centromere-associated 99.1 2.4E-05 5.3E-10 80.8 48.0 226 11-240 76-324 (581)
4 KOG0161 Myosin class II heavy 98.8 6.3E-05 1.4E-09 88.7 40.9 271 153-423 900-1191(1930)
5 TIGR02169 SMC_prok_A chromosom 98.8 0.00076 1.6E-08 78.6 48.2 75 86-161 120-205 (1164)
6 PRK03918 chromosome segregatio 98.7 0.00085 1.8E-08 76.1 42.8 39 89-129 124-162 (880)
7 TIGR02168 SMC_prok_B chromosom 98.6 0.0018 3.9E-08 75.4 44.7 44 88-131 124-174 (1179)
8 TIGR02169 SMC_prok_A chromosom 98.6 0.0019 4.1E-08 75.3 43.7 57 182-238 730-786 (1164)
9 TIGR02168 SMC_prok_B chromosom 98.5 0.002 4.4E-08 75.0 42.3 19 411-429 966-984 (1179)
10 PRK02224 chromosome segregatio 98.4 0.0057 1.2E-07 69.5 41.9 32 206-237 415-446 (880)
11 PRK02224 chromosome segregatio 98.4 0.0088 1.9E-07 67.9 43.1 37 90-127 128-164 (880)
12 PF00038 Filament: Intermediat 98.4 0.0033 7.1E-08 62.5 35.2 103 137-239 8-111 (312)
13 KOG4438 Centromere-associated 98.4 0.0041 8.8E-08 62.5 37.3 126 296-424 271-398 (446)
14 COG1196 Smc Chromosome segrega 98.3 0.016 3.5E-07 67.8 43.2 79 85-164 121-210 (1163)
15 KOG0161 Myosin class II heavy 98.3 0.013 2.9E-07 69.8 41.4 52 176-227 1091-1142(1930)
16 PRK01156 chromosome segregatio 98.3 0.017 3.7E-07 65.8 43.8 27 103-129 140-166 (895)
17 PF07888 CALCOCO1: Calcium bin 98.3 0.0099 2.1E-07 62.5 39.3 17 88-104 95-111 (546)
18 TIGR00606 rad50 rad50. This fa 98.2 0.023 5E-07 67.3 42.0 81 181-261 750-841 (1311)
19 KOG0995 Centromere-associated 98.2 0.01 2.3E-07 61.8 47.8 217 203-439 332-564 (581)
20 COG1196 Smc Chromosome segrega 98.2 0.015 3.2E-07 68.0 38.8 27 408-434 968-994 (1163)
21 KOG4674 Uncharacterized conser 98.2 0.03 6.6E-07 65.9 41.9 256 179-435 91-362 (1822)
22 TIGR00606 rad50 rad50. This fa 98.2 0.032 7E-07 66.1 44.4 33 389-421 1072-1105(1311)
23 COG1340 Uncharacterized archae 98.2 0.0087 1.9E-07 58.0 36.7 228 179-422 45-274 (294)
24 PF07888 CALCOCO1: Calcium bin 98.0 0.03 6.4E-07 59.0 41.3 28 25-52 76-104 (546)
25 COG5185 HEC1 Protein involved 98.0 0.023 5E-07 57.7 42.8 234 11-254 110-377 (622)
26 PRK03918 chromosome segregatio 98.0 0.052 1.1E-06 61.7 44.3 19 216-234 404-422 (880)
27 KOG0250 DNA repair protein RAD 97.9 0.061 1.3E-06 60.2 36.5 65 106-170 175-251 (1074)
28 KOG4674 Uncharacterized conser 97.9 0.1 2.2E-06 61.8 43.7 56 176-231 739-794 (1822)
29 PHA02562 46 endonuclease subun 97.9 0.04 8.8E-07 59.2 32.8 19 110-129 149-167 (562)
30 PF00038 Filament: Intermediat 97.9 0.035 7.5E-07 55.2 34.9 66 176-241 19-85 (312)
31 PF00261 Tropomyosin: Tropomyo 97.9 0.028 6.1E-07 53.7 27.1 113 303-415 112-227 (237)
32 PRK04778 septation ring format 97.8 0.078 1.7E-06 57.3 39.1 25 225-249 199-223 (569)
33 KOG0996 Structural maintenance 97.8 0.071 1.5E-06 59.9 32.2 118 311-435 921-1044(1293)
34 KOG0933 Structural maintenance 97.8 0.1 2.2E-06 57.9 32.1 16 82-97 121-136 (1174)
35 PF00261 Tropomyosin: Tropomyo 97.8 0.036 7.8E-07 53.0 26.3 68 182-249 29-96 (237)
36 PF12128 DUF3584: Protein of u 97.7 0.21 4.4E-06 58.8 40.0 75 179-253 473-547 (1201)
37 KOG0976 Rho/Rac1-interacting s 97.7 0.13 2.8E-06 55.6 38.8 18 408-425 415-432 (1265)
38 PHA02562 46 endonuclease subun 97.5 0.13 2.7E-06 55.4 29.6 63 176-238 182-248 (562)
39 PRK01156 chromosome segregatio 97.5 0.28 6.1E-06 56.0 42.1 27 401-427 467-493 (895)
40 COG5185 HEC1 Protein involved 97.5 0.17 3.7E-06 51.7 41.0 243 3-258 153-423 (622)
41 PRK04863 mukB cell division pr 97.4 0.48 1E-05 56.5 43.7 54 75-132 242-296 (1486)
42 PRK11637 AmiB activator; Provi 97.4 0.22 4.8E-06 51.9 29.2 20 145-164 45-64 (428)
43 KOG0977 Nuclear envelope prote 97.2 0.37 8E-06 50.9 33.5 105 133-237 42-168 (546)
44 PF05667 DUF812: Protein of un 97.2 0.43 9.2E-06 51.6 42.0 96 13-122 7-105 (594)
45 KOG0996 Structural maintenance 97.2 0.59 1.3E-05 52.9 37.2 64 199-262 387-453 (1293)
46 PRK11637 AmiB activator; Provi 97.2 0.36 7.8E-06 50.3 34.4 18 103-120 9-26 (428)
47 PF14915 CCDC144C: CCDC144C pr 97.2 0.26 5.6E-06 47.8 37.1 265 152-432 4-300 (305)
48 PF10174 Cast: RIM-binding pro 97.0 0.77 1.7E-05 51.0 40.1 123 108-237 265-398 (775)
49 KOG0971 Microtubule-associated 97.0 0.87 1.9E-05 50.2 38.5 104 339-442 472-591 (1243)
50 PF10174 Cast: RIM-binding pro 96.9 0.96 2.1E-05 50.3 39.4 211 182-395 273-503 (775)
51 PF09726 Macoilin: Transmembra 96.9 1 2.3E-05 49.6 29.4 25 327-351 589-613 (697)
52 PF08317 Spc7: Spc7 kinetochor 96.9 0.6 1.3E-05 46.8 28.8 12 87-98 15-26 (325)
53 KOG0964 Structural maintenance 96.8 1.1 2.5E-05 49.8 32.8 11 88-98 121-131 (1200)
54 COG4942 Membrane-bound metallo 96.8 0.74 1.6E-05 47.1 30.6 19 148-166 39-57 (420)
55 KOG0250 DNA repair protein RAD 96.8 1.4 2.9E-05 49.9 33.8 25 30-54 66-90 (1074)
56 PF12128 DUF3584: Protein of u 96.8 1.8 3.9E-05 51.1 41.6 46 328-373 819-864 (1201)
57 PRK04778 septation ring format 96.8 1.1 2.3E-05 48.6 39.7 23 174-196 164-186 (569)
58 KOG0933 Structural maintenance 96.8 1.3 2.8E-05 49.5 34.9 12 100-111 647-659 (1174)
59 PF05701 WEMBL: Weak chloropla 96.8 1.1 2.3E-05 48.0 40.4 76 180-256 170-249 (522)
60 KOG0977 Nuclear envelope prote 96.6 1.2 2.6E-05 47.2 32.1 27 218-244 209-235 (546)
61 PF05622 HOOK: HOOK protein; 96.6 0.00058 1.3E-08 75.6 0.0 50 379-428 623-672 (713)
62 COG1579 Zn-ribbon protein, pos 96.5 0.86 1.9E-05 43.3 23.9 29 226-254 12-40 (239)
63 COG1340 Uncharacterized archae 96.4 1.1 2.3E-05 43.8 31.4 12 158-169 17-28 (294)
64 COG2433 Uncharacterized conser 96.2 0.39 8.5E-06 50.8 18.3 44 3-47 269-312 (652)
65 KOG0994 Extracellular matrix g 96.1 3.4 7.3E-05 47.0 33.6 30 112-141 1471-1500(1758)
66 PF15066 CAGE1: Cancer-associa 96.1 1.9 4.2E-05 44.2 26.5 60 367-426 466-526 (527)
67 PF09726 Macoilin: Transmembra 96.1 2.9 6.3E-05 46.2 30.6 54 174-227 459-512 (697)
68 KOG0612 Rho-associated, coiled 96.1 3.8 8.2E-05 47.0 31.6 59 179-237 469-528 (1317)
69 TIGR03185 DNA_S_dndD DNA sulfu 96.0 3.2 6.9E-05 45.7 39.2 68 156-224 184-251 (650)
70 KOG0994 Extracellular matrix g 96.0 3.9 8.5E-05 46.5 36.4 31 204-234 1512-1542(1758)
71 PF06160 EzrA: Septation ring 95.9 3.2 7E-05 44.8 42.8 42 222-263 192-233 (560)
72 KOG1029 Endocytic adaptor prot 95.9 3.6 7.8E-05 44.9 26.5 47 191-237 432-478 (1118)
73 PF06008 Laminin_I: Laminin Do 95.8 2.1 4.5E-05 41.5 31.9 63 201-263 78-141 (264)
74 PF08317 Spc7: Spc7 kinetochor 95.7 2.7 5.8E-05 42.2 27.5 44 384-427 250-293 (325)
75 KOG0976 Rho/Rac1-interacting s 95.6 4.5 9.8E-05 44.3 36.3 259 176-434 93-403 (1265)
76 COG4942 Membrane-bound metallo 95.6 3.3 7.2E-05 42.5 28.6 70 178-247 41-110 (420)
77 COG0419 SbcC ATPase involved i 95.5 6.4 0.00014 45.2 39.6 26 102-127 144-169 (908)
78 PF10473 CENP-F_leu_zip: Leuci 95.5 1.6 3.4E-05 38.1 17.3 17 150-166 20-36 (140)
79 PF10473 CENP-F_leu_zip: Leuci 95.4 1.7 3.6E-05 38.0 17.2 9 149-157 26-34 (140)
80 PF05667 DUF812: Protein of un 95.3 5.4 0.00012 43.2 31.9 35 13-47 70-105 (594)
81 PF15619 Lebercilin: Ciliary p 95.2 2.6 5.6E-05 39.0 25.6 88 150-237 22-109 (194)
82 PF05483 SCP-1: Synaptonemal c 95.2 5.8 0.00013 42.9 42.9 67 366-433 407-473 (786)
83 TIGR03007 pepcterm_ChnLen poly 95.1 5.4 0.00012 42.3 27.8 106 106-219 128-234 (498)
84 COG3883 Uncharacterized protei 95.0 3.5 7.7E-05 39.7 26.4 50 205-254 61-110 (265)
85 PF11559 ADIP: Afadin- and alp 95.0 2.3 5E-05 37.5 19.2 57 87-143 6-62 (151)
86 PF05622 HOOK: HOOK protein; 95.0 0.073 1.6E-06 59.1 8.1 44 77-121 68-118 (713)
87 TIGR01005 eps_transp_fam exopo 94.9 8 0.00017 43.3 28.6 81 87-170 138-224 (754)
88 PF12718 Tropomyosin_1: Tropom 94.9 2.5 5.4E-05 37.1 17.7 79 176-254 22-103 (143)
89 PRK09039 hypothetical protein; 94.9 4.2 9E-05 41.1 19.7 51 358-408 117-167 (343)
90 KOG1937 Uncharacterized conser 94.8 5.6 0.00012 40.9 39.1 97 13-122 7-104 (521)
91 PF05701 WEMBL: Weak chloropla 94.8 7 0.00015 41.8 39.9 30 191-220 118-147 (522)
92 PF12718 Tropomyosin_1: Tropom 94.6 2.9 6.2E-05 36.7 19.0 23 327-349 117-139 (143)
93 KOG4643 Uncharacterized coiled 94.6 9.9 0.00022 42.9 40.4 15 334-348 483-497 (1195)
94 KOG1029 Endocytic adaptor prot 94.6 8.7 0.00019 42.1 30.4 30 208-237 435-464 (1118)
95 KOG0971 Microtubule-associated 94.4 11 0.00023 42.2 36.7 64 371-435 482-546 (1243)
96 smart00787 Spc7 Spc7 kinetocho 94.2 6.6 0.00014 39.1 26.5 12 87-98 11-22 (312)
97 COG3883 Uncharacterized protei 94.2 5.7 0.00012 38.3 25.6 39 202-240 51-89 (265)
98 KOG0946 ER-Golgi vesicle-tethe 94.1 11 0.00025 41.5 28.6 57 183-239 658-714 (970)
99 TIGR02680 conserved hypothetic 94.1 17 0.00038 43.6 32.8 51 328-378 899-949 (1353)
100 KOG4643 Uncharacterized coiled 94.1 13 0.00028 42.0 38.2 27 140-166 198-224 (1195)
101 PF14662 CCDC155: Coiled-coil 94.0 4.8 0.0001 36.8 22.8 57 181-237 66-122 (193)
102 KOG0018 Structural maintenance 93.9 14 0.00031 42.0 28.4 74 150-241 655-728 (1141)
103 PF01576 Myosin_tail_1: Myosin 93.9 0.017 3.6E-07 65.3 0.0 40 368-407 353-392 (859)
104 PF10234 Cluap1: Clusterin-ass 93.8 6.9 0.00015 37.9 22.2 92 20-128 2-98 (267)
105 KOG0946 ER-Golgi vesicle-tethe 93.8 13 0.00028 41.1 34.7 56 151-213 661-716 (970)
106 TIGR00634 recN DNA repair prot 93.8 12 0.00026 40.5 24.5 61 106-168 140-203 (563)
107 COG1579 Zn-ribbon protein, pos 93.7 6.6 0.00014 37.4 23.0 8 417-424 178-185 (239)
108 PF05010 TACC: Transforming ac 93.7 6 0.00013 36.9 29.6 25 241-265 65-89 (207)
109 PF06705 SF-assemblin: SF-asse 93.7 6.8 0.00015 37.5 25.9 97 328-430 88-188 (247)
110 TIGR03185 DNA_S_dndD DNA sulfu 93.6 14 0.00029 40.8 38.5 25 213-237 265-289 (650)
111 PF01576 Myosin_tail_1: Myosin 93.4 0.022 4.8E-07 64.3 0.0 52 386-437 483-534 (859)
112 PRK09039 hypothetical protein; 93.2 11 0.00023 38.2 22.6 22 145-166 44-65 (343)
113 PF06005 DUF904: Protein of un 93.2 2.9 6.2E-05 32.2 11.3 67 140-220 4-70 (72)
114 COG0419 SbcC ATPase involved i 93.1 20 0.00043 41.2 44.2 44 197-240 397-440 (908)
115 PF09730 BicD: Microtubule-ass 93.1 17 0.00036 40.2 38.7 46 176-221 70-115 (717)
116 KOG0999 Microtubule-associated 93.1 14 0.00029 39.1 25.4 50 308-357 205-254 (772)
117 PF15619 Lebercilin: Ciliary p 93.0 7.4 0.00016 36.0 24.1 22 194-215 38-59 (194)
118 KOG0962 DNA repair protein RAD 92.9 23 0.0005 41.4 36.3 14 37-50 658-672 (1294)
119 PF10498 IFT57: Intra-flagella 92.8 12 0.00026 38.0 20.1 79 32-128 36-116 (359)
120 PF05483 SCP-1: Synaptonemal c 92.8 17 0.00036 39.5 43.5 42 173-214 266-307 (786)
121 PF15070 GOLGA2L5: Putative go 92.8 17 0.00038 39.6 36.6 64 136-199 32-104 (617)
122 TIGR03017 EpsF chain length de 92.6 15 0.00032 38.3 27.8 62 107-170 139-201 (444)
123 PF10481 CENP-F_N: Cenp-F N-te 92.5 4.3 9.2E-05 39.0 13.7 107 134-240 19-125 (307)
124 PF05266 DUF724: Protein of un 92.4 8.9 0.00019 35.3 18.1 37 60-98 27-65 (190)
125 KOG4673 Transcription factor T 92.4 19 0.00041 39.1 36.8 75 175-249 402-478 (961)
126 PF15070 GOLGA2L5: Putative go 92.1 21 0.00046 39.0 35.9 27 326-352 196-222 (617)
127 PF13851 GAS: Growth-arrest sp 92.0 10 0.00022 35.2 26.5 82 156-237 29-113 (201)
128 KOG0964 Structural maintenance 92.0 26 0.00056 39.7 37.6 19 358-376 447-465 (1200)
129 PF06160 EzrA: Septation ring 91.9 21 0.00046 38.6 42.1 41 309-349 356-396 (560)
130 KOG0980 Actin-binding protein 91.8 25 0.00054 39.3 32.2 22 176-197 359-380 (980)
131 KOG0999 Microtubule-associated 91.5 21 0.00045 37.8 34.2 41 180-220 147-187 (772)
132 KOG0978 E3 ubiquitin ligase in 91.4 26 0.00056 38.5 27.3 210 131-371 431-642 (698)
133 PF09787 Golgin_A5: Golgin sub 91.4 23 0.00049 37.9 26.2 29 397-425 349-377 (511)
134 PF06705 SF-assemblin: SF-asse 91.2 15 0.00031 35.3 33.3 43 397-439 202-244 (247)
135 PF10146 zf-C4H2: Zinc finger- 91.1 14 0.00031 35.1 15.8 107 330-441 6-114 (230)
136 PRK09841 cryptic autophosphory 90.9 26 0.00056 39.2 20.2 134 106-248 234-370 (726)
137 COG4026 Uncharacterized protei 90.8 8 0.00017 36.1 13.1 109 105-220 99-208 (290)
138 KOG0018 Structural maintenance 90.8 35 0.00076 39.0 33.8 33 410-442 444-476 (1141)
139 PF04849 HAP1_N: HAP1 N-termin 90.7 16 0.00034 36.1 16.0 125 312-436 161-302 (306)
140 KOG1962 B-cell receptor-associ 90.3 11 0.00025 35.2 13.9 62 180-241 149-210 (216)
141 KOG4302 Microtubule-associated 90.1 33 0.00071 37.6 28.6 129 128-263 45-174 (660)
142 PF08614 ATG16: Autophagy prot 90.0 2.4 5.1E-05 39.1 9.5 31 206-236 147-177 (194)
143 PRK10884 SH3 domain-containing 90.0 5.5 0.00012 37.2 11.8 47 330-376 98-144 (206)
144 TIGR00634 recN DNA repair prot 90.0 31 0.00068 37.3 23.0 25 358-382 347-371 (563)
145 KOG0980 Actin-binding protein 90.0 37 0.0008 38.0 35.4 20 328-347 497-516 (980)
146 PF09304 Cortex-I_coil: Cortex 89.7 10 0.00022 31.3 13.4 68 147-221 9-76 (107)
147 PF15294 Leu_zip: Leucine zipp 89.6 11 0.00024 36.6 13.9 38 179-216 136-173 (278)
148 PF07106 TBPIP: Tat binding pr 89.3 7 0.00015 35.1 11.8 66 180-257 91-157 (169)
149 PF05791 Bacillus_HBL: Bacillu 89.2 17 0.00038 33.2 14.5 108 112-241 73-180 (184)
150 PRK04863 mukB cell division pr 89.1 61 0.0013 39.3 44.4 15 124-138 274-288 (1486)
151 PF08614 ATG16: Autophagy prot 88.8 10 0.00023 34.9 12.8 117 125-241 9-133 (194)
152 PF13851 GAS: Growth-arrest sp 88.7 20 0.00044 33.3 21.8 105 145-249 32-139 (201)
153 KOG4673 Transcription factor T 88.6 41 0.00088 36.7 34.8 21 326-346 545-565 (961)
154 PF04111 APG6: Autophagy prote 88.1 10 0.00022 37.9 12.9 62 177-238 73-134 (314)
155 PF05557 MAD: Mitotic checkpoi 88.0 0.15 3.3E-06 56.7 0.0 16 422-437 448-463 (722)
156 PF10267 Tmemb_cc2: Predicted 87.9 13 0.00029 38.1 13.8 74 182-258 212-285 (395)
157 PF05010 TACC: Transforming ac 87.9 23 0.0005 33.0 29.0 119 288-426 84-205 (207)
158 PF14915 CCDC144C: CCDC144C pr 87.9 29 0.00062 34.0 37.2 83 176-258 64-153 (305)
159 PF10168 Nup88: Nuclear pore c 87.9 26 0.00057 39.0 17.1 39 183-221 580-618 (717)
160 COG4372 Uncharacterized protei 87.8 34 0.00073 34.7 35.5 44 183-226 117-160 (499)
161 KOG0804 Cytoplasmic Zn-finger 87.6 19 0.00041 37.2 14.4 7 127-133 336-342 (493)
162 PF12777 MT: Microtubule-bindi 87.5 4.2 9.2E-05 41.0 10.1 27 25-52 100-132 (344)
163 PF10498 IFT57: Intra-flagella 87.4 12 0.00025 38.1 13.0 44 7-50 69-114 (359)
164 PF05557 MAD: Mitotic checkpoi 86.9 7.2 0.00016 43.5 12.4 40 384-423 605-644 (722)
165 PF05911 DUF869: Plant protein 86.6 60 0.0013 36.4 25.2 42 200-241 600-641 (769)
166 PRK10884 SH3 domain-containing 86.4 14 0.00031 34.4 12.1 22 333-354 94-115 (206)
167 KOG0963 Transcription factor/C 86.3 52 0.0011 35.5 37.1 25 240-264 119-143 (629)
168 PRK10869 recombination and rep 86.3 53 0.0011 35.5 25.6 75 89-168 122-199 (553)
169 PF03800 Nuf2: Nuf2 family; I 86.2 0.73 1.6E-05 40.4 3.3 39 14-52 90-128 (146)
170 PF07889 DUF1664: Protein of u 85.9 19 0.00042 30.8 11.6 41 366-406 84-124 (126)
171 PRK15422 septal ring assembly 85.9 14 0.00031 28.6 10.0 65 143-221 7-71 (79)
172 smart00787 Spc7 Spc7 kinetocho 85.8 40 0.00087 33.6 26.6 62 366-427 227-288 (312)
173 PF12329 TMF_DNA_bd: TATA elem 85.7 12 0.00026 28.8 9.4 57 183-239 13-69 (74)
174 PF14197 Cep57_CLD_2: Centroso 85.6 12 0.00026 28.5 9.2 60 180-239 3-62 (69)
175 PRK11281 hypothetical protein; 85.4 83 0.0018 37.0 30.1 59 185-243 124-182 (1113)
176 KOG2991 Splicing regulator [RN 85.4 35 0.00076 32.6 24.1 66 188-253 107-172 (330)
177 PRK15422 septal ring assembly 85.3 16 0.00034 28.5 11.1 17 145-161 23-39 (79)
178 TIGR02680 conserved hypothetic 85.2 96 0.0021 37.4 34.6 81 317-397 881-961 (1353)
179 PLN02939 transferase, transfer 85.2 78 0.0017 36.4 29.9 40 189-228 142-181 (977)
180 PF12325 TMF_TATA_bd: TATA ele 85.0 23 0.00049 30.1 14.1 27 388-414 92-118 (120)
181 PF03962 Mnd1: Mnd1 family; I 84.9 31 0.00067 31.7 13.5 59 137-196 66-124 (188)
182 COG3074 Uncharacterized protei 84.7 15 0.00033 27.7 10.9 63 143-219 7-69 (79)
183 PF12240 Angiomotin_C: Angiomo 84.7 18 0.00039 33.4 11.5 39 296-334 128-166 (205)
184 PF04012 PspA_IM30: PspA/IM30 84.7 35 0.00075 31.9 20.2 17 112-128 4-20 (221)
185 PF11559 ADIP: Afadin- and alp 84.5 27 0.00059 30.6 17.1 44 384-427 107-150 (151)
186 PF14662 CCDC155: Coiled-coil 84.2 34 0.00073 31.4 25.3 29 213-241 4-32 (193)
187 PF10146 zf-C4H2: Zinc finger- 84.2 39 0.00084 32.1 15.4 50 191-240 34-83 (230)
188 COG1382 GimC Prefoldin, chaper 83.3 27 0.00058 29.6 11.9 83 134-216 14-111 (119)
189 KOG0612 Rho-associated, coiled 83.2 1E+02 0.0022 36.1 40.4 23 329-351 671-693 (1317)
190 PF05700 BCAS2: Breast carcino 81.9 46 0.001 31.3 15.5 40 198-237 170-209 (221)
191 TIGR01010 BexC_CtrB_KpsE polys 81.3 64 0.0014 32.6 19.1 62 106-169 137-199 (362)
192 TIGR02449 conserved hypothetic 81.1 21 0.00045 26.8 9.1 46 177-222 16-61 (65)
193 PF09789 DUF2353: Uncharacteri 81.0 63 0.0014 32.3 22.6 78 358-435 141-228 (319)
194 PF15290 Syntaphilin: Golgi-lo 80.9 43 0.00093 32.5 12.8 54 355-409 87-141 (305)
195 PF15066 CAGE1: Cancer-associa 80.7 77 0.0017 33.0 25.5 63 175-237 331-396 (527)
196 COG3074 Uncharacterized protei 80.7 22 0.00048 26.8 9.3 52 201-252 23-74 (79)
197 KOG0804 Cytoplasmic Zn-finger 79.9 80 0.0017 32.8 15.9 38 329-366 407-444 (493)
198 PF10168 Nup88: Nuclear pore c 79.6 1.1E+02 0.0024 34.2 19.7 151 84-258 505-662 (717)
199 PF15397 DUF4618: Domain of un 79.4 62 0.0014 31.2 23.8 53 329-381 85-144 (258)
200 KOG3091 Nuclear pore complex, 79.2 85 0.0019 33.0 15.3 108 136-258 337-444 (508)
201 COG1842 PspA Phage shock prote 78.4 62 0.0013 30.6 15.5 26 297-322 45-70 (225)
202 PF06005 DUF904: Protein of un 78.3 28 0.00061 26.7 9.2 43 178-220 21-63 (72)
203 PF05615 THOC7: Tho complex su 78.3 44 0.00095 28.8 14.7 50 194-244 79-128 (139)
204 PF08826 DMPK_coil: DMPK coile 78.0 26 0.00055 26.0 8.5 49 294-345 11-59 (61)
205 PF04111 APG6: Autophagy prote 78.0 46 0.00099 33.2 12.9 39 202-240 84-122 (314)
206 PF02403 Seryl_tRNA_N: Seryl-t 78.0 37 0.0008 27.8 11.7 75 123-197 10-89 (108)
207 smart00338 BRLZ basic region l 78.0 21 0.00045 26.5 8.1 57 109-165 2-58 (65)
208 KOG1003 Actin filament-coating 77.9 58 0.0012 30.0 26.4 50 205-254 69-118 (205)
209 PRK10698 phage shock protein P 77.8 63 0.0014 30.5 21.4 14 112-125 5-18 (222)
210 KOG0243 Kinesin-like protein [ 77.7 1.4E+02 0.0031 34.4 34.0 65 176-240 449-513 (1041)
211 KOG1003 Actin filament-coating 77.4 59 0.0013 29.9 25.4 59 319-381 138-196 (205)
212 PRK10361 DNA recombination pro 76.9 1E+02 0.0023 32.5 21.6 45 384-428 146-190 (475)
213 PF07798 DUF1640: Protein of u 76.9 58 0.0012 29.5 18.9 16 150-165 54-69 (177)
214 PF13870 DUF4201: Domain of un 76.7 57 0.0012 29.4 18.6 101 141-248 43-145 (177)
215 PF04156 IncA: IncA protein; 75.7 63 0.0014 29.3 14.3 11 151-161 92-102 (191)
216 PF05266 DUF724: Protein of un 75.7 66 0.0014 29.6 15.3 54 356-409 130-183 (190)
217 PF10212 TTKRSYEDQ: Predicted 75.6 84 0.0018 33.4 14.3 47 191-237 468-514 (518)
218 PF09730 BicD: Microtubule-ass 75.6 1.4E+02 0.003 33.3 39.9 46 154-199 76-121 (717)
219 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.0 53 0.0012 28.2 18.5 67 363-429 58-124 (132)
220 PRK11519 tyrosine kinase; Prov 74.7 1.5E+02 0.0032 33.2 20.3 63 106-170 234-297 (719)
221 KOG4593 Mitotic checkpoint pro 74.3 1.4E+02 0.0031 32.8 36.3 14 113-126 180-193 (716)
222 PLN02939 transferase, transfer 74.2 1.7E+02 0.0038 33.7 29.1 58 96-165 124-181 (977)
223 COG4477 EzrA Negative regulato 73.7 1.3E+02 0.0028 32.0 38.6 121 142-265 106-238 (570)
224 PF00769 ERM: Ezrin/radixin/mo 73.5 88 0.0019 30.0 14.7 23 210-232 75-97 (246)
225 COG2433 Uncharacterized conser 72.6 83 0.0018 34.0 13.4 67 313-380 438-504 (652)
226 PF07200 Mod_r: Modifier of ru 72.3 66 0.0014 28.0 14.2 80 173-254 25-104 (150)
227 PF04912 Dynamitin: Dynamitin 72.2 1.2E+02 0.0026 31.1 26.7 53 142-194 89-144 (388)
228 COG4477 EzrA Negative regulato 72.0 1.4E+02 0.0031 31.8 35.8 86 179-266 252-340 (570)
229 COG0497 RecN ATPase involved i 71.9 1.5E+02 0.0033 32.0 26.3 80 83-167 114-198 (557)
230 PF01920 Prefoldin_2: Prefoldi 71.6 52 0.0011 26.5 10.7 31 138-168 3-33 (106)
231 KOG4005 Transcription factor X 70.7 58 0.0013 30.8 10.5 55 179-233 94-148 (292)
232 smart00502 BBC B-Box C-termina 70.6 59 0.0013 26.7 13.8 67 200-266 4-71 (127)
233 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.6 68 0.0015 27.5 17.9 26 230-255 9-34 (132)
234 cd00014 CH Calponin homology d 70.5 4.4 9.4E-05 32.8 3.0 36 90-125 69-106 (107)
235 KOG0288 WD40 repeat protein Ti 70.1 1.4E+02 0.003 30.8 15.7 36 220-255 86-124 (459)
236 PHA03011 hypothetical protein; 70.1 39 0.00084 27.5 8.0 60 182-241 57-116 (120)
237 PF14992 TMCO5: TMCO5 family 70.0 1.1E+02 0.0025 29.8 15.5 61 196-257 4-64 (280)
238 KOG1962 B-cell receptor-associ 69.5 77 0.0017 29.7 11.2 15 5-20 20-34 (216)
239 PF07106 TBPIP: Tat binding pr 69.0 28 0.0006 31.2 8.2 54 184-237 74-129 (169)
240 PF09728 Taxilin: Myosin-like 68.9 1.3E+02 0.0028 30.0 37.0 22 175-196 78-99 (309)
241 PF04012 PspA_IM30: PspA/IM30 68.8 1E+02 0.0022 28.7 18.0 20 124-143 3-22 (221)
242 PLN03229 acetyl-coenzyme A car 68.6 2E+02 0.0043 32.1 22.4 40 337-377 647-686 (762)
243 PF06008 Laminin_I: Laminin Do 68.6 1.1E+02 0.0025 29.3 30.8 54 201-254 57-110 (264)
244 KOG1103 Predicted coiled-coil 68.4 1.4E+02 0.0029 30.1 26.1 11 94-105 6-16 (561)
245 PF03962 Mnd1: Mnd1 family; I 68.0 99 0.0021 28.4 13.1 34 400-433 125-158 (188)
246 KOG0979 Structural maintenance 68.0 2.3E+02 0.005 32.6 33.1 36 396-434 888-923 (1072)
247 PF15035 Rootletin: Ciliary ro 67.9 98 0.0021 28.3 13.1 20 410-429 148-167 (182)
248 PF08581 Tup_N: Tup N-terminal 66.5 61 0.0013 25.4 11.1 46 374-419 28-73 (79)
249 PF03801 Ndc80_HEC: HEC/Ndc80p 66.4 38 0.00081 30.1 8.3 98 12-133 43-147 (157)
250 PF14197 Cep57_CLD_2: Centroso 66.2 56 0.0012 24.8 8.7 55 328-382 8-65 (69)
251 PF02403 Seryl_tRNA_N: Seryl-t 66.1 50 0.0011 27.0 8.6 22 181-202 35-56 (108)
252 PF09728 Taxilin: Myosin-like 65.8 1.5E+02 0.0032 29.5 37.7 12 181-192 56-67 (309)
253 PRK13922 rod shape-determining 65.7 91 0.002 30.2 11.7 57 106-162 35-91 (276)
254 KOG0979 Structural maintenance 65.6 2.6E+02 0.0056 32.3 30.0 34 401-434 886-919 (1072)
255 KOG0249 LAR-interacting protei 65.0 2.3E+02 0.0049 31.4 25.0 44 355-398 214-257 (916)
256 KOG4360 Uncharacterized coiled 64.9 1E+02 0.0023 32.5 12.0 53 180-239 252-304 (596)
257 PF12329 TMF_DNA_bd: TATA elem 64.8 62 0.0014 24.9 9.6 13 154-166 12-24 (74)
258 PF00307 CH: Calponin homology 64.2 7.6 0.00017 31.4 3.3 36 90-125 70-107 (108)
259 KOG0963 Transcription factor/C 64.1 2.2E+02 0.0047 30.9 34.2 49 334-382 294-342 (629)
260 PF09789 DUF2353: Uncharacteri 64.0 1.6E+02 0.0035 29.4 28.6 45 358-402 273-317 (319)
261 PF15272 BBP1_C: Spindle pole 63.6 1.2E+02 0.0027 27.9 20.4 57 209-265 4-61 (196)
262 KOG1853 LIS1-interacting prote 63.6 1.4E+02 0.0031 28.6 22.4 50 218-275 92-141 (333)
263 TIGR03752 conj_TIGR03752 integ 63.5 1E+02 0.0023 32.3 11.8 7 92-98 47-53 (472)
264 PLN03188 kinesin-12 family pro 63.3 2.8E+02 0.006 32.9 16.0 119 132-253 1113-1254(1320)
265 TIGR02338 gimC_beta prefoldin, 63.2 86 0.0019 25.9 11.9 34 135-168 5-38 (110)
266 KOG2129 Uncharacterized conser 63.0 1.9E+02 0.0041 29.8 23.1 40 329-368 250-289 (552)
267 PF13874 Nup54: Nucleoporin co 62.3 46 0.00099 29.0 7.9 43 176-218 73-115 (141)
268 KOG0243 Kinesin-like protein [ 61.7 3.1E+02 0.0067 31.9 36.0 15 107-121 367-381 (1041)
269 COG4372 Uncharacterized protei 61.6 1.9E+02 0.0042 29.5 31.1 25 390-414 264-288 (499)
270 PF09738 DUF2051: Double stran 61.5 1.8E+02 0.0038 28.9 13.8 12 150-161 94-105 (302)
271 PF07111 HCR: Alpha helical co 61.4 2.6E+02 0.0056 30.9 37.7 68 177-244 164-232 (739)
272 PRK15178 Vi polysaccharide exp 61.1 1.6E+02 0.0034 30.8 12.7 123 296-423 225-357 (434)
273 KOG4005 Transcription factor X 61.0 56 0.0012 30.9 8.5 16 181-196 131-146 (292)
274 PF15290 Syntaphilin: Golgi-lo 60.1 1.7E+02 0.0038 28.5 13.5 24 359-382 119-142 (305)
275 KOG2264 Exostosin EXT1L [Signa 59.8 57 0.0012 34.8 9.1 55 178-232 96-150 (907)
276 PF05278 PEARLI-4: Arabidopsis 59.5 1.8E+02 0.0038 28.3 13.6 29 209-237 227-255 (269)
277 TIGR03752 conj_TIGR03752 integ 59.4 1.2E+02 0.0026 31.9 11.4 24 141-164 60-83 (472)
278 PF06818 Fez1: Fez1; InterPro 59.3 1.5E+02 0.0033 27.5 16.7 27 140-166 10-36 (202)
279 PF08581 Tup_N: Tup N-terminal 58.6 87 0.0019 24.5 10.6 42 177-221 34-75 (79)
280 PF06156 DUF972: Protein of un 58.4 78 0.0017 26.3 8.2 25 138-162 6-30 (107)
281 cd00632 Prefoldin_beta Prefold 57.8 1E+02 0.0022 25.1 11.6 27 140-166 6-32 (105)
282 TIGR03545 conserved hypothetic 57.8 1.2E+02 0.0025 32.9 11.6 31 390-420 242-272 (555)
283 PF07111 HCR: Alpha helical co 57.7 3E+02 0.0065 30.4 36.3 56 328-383 302-357 (739)
284 PHA03011 hypothetical protein; 57.3 88 0.0019 25.5 7.9 30 137-166 61-90 (120)
285 PF04977 DivIC: Septum formati 57.1 51 0.0011 25.0 6.7 41 206-250 20-60 (80)
286 PF07716 bZIP_2: Basic region 57.0 66 0.0014 22.9 6.7 17 178-194 35-51 (54)
287 KOG3647 Predicted coiled-coil 56.9 1E+02 0.0022 29.8 9.6 71 315-385 123-196 (338)
288 PF10481 CENP-F_N: Cenp-F N-te 56.8 2E+02 0.0043 28.0 14.6 29 329-357 43-71 (307)
289 COG1842 PspA Phage shock prote 56.7 1.8E+02 0.0039 27.5 21.7 14 112-125 5-18 (225)
290 PF07851 TMPIT: TMPIT-like pro 56.6 1.5E+02 0.0033 29.7 11.3 40 180-219 16-55 (330)
291 PRK06231 F0F1 ATP synthase sub 56.5 1.7E+02 0.0037 27.2 19.4 58 86-143 19-78 (205)
292 KOG4571 Activating transcripti 56.0 32 0.00069 33.6 6.2 61 107-167 218-282 (294)
293 PRK11020 hypothetical protein; 55.4 1E+02 0.0023 25.7 8.2 50 148-199 6-55 (118)
294 PRK13169 DNA replication intia 54.8 95 0.0021 25.9 8.1 27 138-164 6-32 (110)
295 KOG4360 Uncharacterized coiled 54.3 2.9E+02 0.0064 29.3 14.2 70 179-248 230-299 (596)
296 PF07889 DUF1664: Protein of u 53.7 1.4E+02 0.0031 25.5 12.4 36 205-240 84-119 (126)
297 TIGR03007 pepcterm_ChnLen poly 53.7 2.9E+02 0.0063 29.1 21.7 63 179-241 172-235 (498)
298 PF05377 FlaC_arch: Flagella a 53.0 84 0.0018 22.8 6.5 34 179-212 4-37 (55)
299 TIGR00618 sbcc exonuclease Sbc 52.5 4.5E+02 0.0097 30.8 42.1 38 91-129 143-180 (1042)
300 PF15254 CCDC14: Coiled-coil d 52.2 3.8E+02 0.0083 30.0 19.8 78 176-262 388-468 (861)
301 PRK00409 recombination and DNA 52.0 4E+02 0.0087 30.2 16.4 51 177-227 229-280 (782)
302 KOG0962 DNA repair protein RAD 51.6 4.9E+02 0.011 31.1 38.3 18 404-421 1121-1138(1294)
303 COG0216 PrfA Protein chain rel 51.3 2.7E+02 0.0059 28.0 12.7 67 284-350 33-101 (363)
304 PRK11546 zraP zinc resistance 51.3 1.1E+02 0.0025 26.7 8.4 29 386-414 90-118 (143)
305 TIGR02231 conserved hypothetic 50.8 1.3E+02 0.0029 32.1 10.8 35 203-237 138-172 (525)
306 PRK13729 conjugal transfer pil 50.7 60 0.0013 34.1 7.7 19 333-351 70-88 (475)
307 PF06810 Phage_GP20: Phage min 50.6 1.3E+02 0.0029 26.6 9.0 30 316-345 18-47 (155)
308 PF03915 AIP3: Actin interacti 50.5 3.2E+02 0.0069 28.5 15.2 18 182-199 151-168 (424)
309 PF02845 CUE: CUE domain; Int 50.5 14 0.0003 24.9 2.1 19 5-23 11-29 (42)
310 PF10224 DUF2205: Predicted co 50.4 95 0.0021 24.4 7.0 27 186-212 20-46 (80)
311 KOG1937 Uncharacterized conser 50.2 3.2E+02 0.007 28.6 34.1 40 389-428 473-513 (521)
312 PF03999 MAP65_ASE1: Microtubu 50.1 11 0.00024 41.2 2.5 32 398-429 318-349 (619)
313 PF00170 bZIP_1: bZIP transcri 50.1 1E+02 0.0022 22.7 8.8 22 125-146 18-39 (64)
314 PF02183 HALZ: Homeobox associ 49.9 66 0.0014 22.2 5.4 16 200-215 16-31 (45)
315 PF09304 Cortex-I_coil: Cortex 49.5 1.5E+02 0.0033 24.6 13.4 46 176-221 45-90 (107)
316 PF12777 MT: Microtubule-bindi 49.4 2.9E+02 0.0063 27.8 19.4 29 397-425 285-313 (344)
317 PF05384 DegS: Sensor protein 48.8 2E+02 0.0043 25.7 19.1 26 288-313 78-103 (159)
318 PLN02678 seryl-tRNA synthetase 48.6 1.8E+02 0.0038 30.7 10.9 28 139-166 32-59 (448)
319 PF13514 AAA_27: AAA domain 48.4 5.3E+02 0.011 30.5 43.7 61 197-257 674-738 (1111)
320 PRK11281 hypothetical protein; 48.3 5.3E+02 0.012 30.5 29.2 9 408-416 358-366 (1113)
321 PRK11546 zraP zinc resistance 48.0 1.2E+02 0.0026 26.5 8.0 65 127-194 44-108 (143)
322 PF06632 XRCC4: DNA double-str 47.9 3.1E+02 0.0067 27.7 12.9 26 141-166 145-170 (342)
323 TIGR02894 DNA_bind_RsfA transc 47.9 1.5E+02 0.0033 26.4 8.7 13 271-283 81-93 (161)
324 TIGR01069 mutS2 MutS2 family p 47.8 4.6E+02 0.01 29.7 16.0 22 1-22 1-22 (771)
325 PF13874 Nup54: Nucleoporin co 47.1 1.6E+02 0.0035 25.5 8.9 41 181-221 50-90 (141)
326 PRK10869 recombination and rep 47.1 4E+02 0.0087 28.8 25.6 12 42-53 38-49 (553)
327 PF09738 DUF2051: Double stran 47.1 3E+02 0.0065 27.3 13.0 48 180-227 131-178 (302)
328 PF15030 DUF4527: Protein of u 46.8 2.7E+02 0.0058 26.6 12.1 48 185-232 54-101 (277)
329 PRK14154 heat shock protein Gr 46.7 1.8E+02 0.0039 27.2 9.5 70 174-252 51-120 (208)
330 PF09755 DUF2046: Uncharacteri 46.6 3.1E+02 0.0067 27.3 33.3 19 176-194 49-67 (310)
331 PF15233 SYCE1: Synaptonemal c 46.2 1.9E+02 0.0042 24.8 13.6 16 242-257 112-127 (134)
332 PF08826 DMPK_coil: DMPK coile 46.1 1.2E+02 0.0026 22.5 8.8 30 208-237 23-52 (61)
333 KOG2391 Vacuolar sorting prote 46.0 94 0.002 31.1 7.8 48 195-242 231-278 (365)
334 PF09755 DUF2046: Uncharacteri 45.8 3.2E+02 0.0069 27.2 34.6 109 141-249 42-160 (310)
335 PF05700 BCAS2: Breast carcino 45.7 2.6E+02 0.0057 26.2 16.2 15 244-258 99-113 (221)
336 KOG3091 Nuclear pore complex, 45.1 4E+02 0.0087 28.2 18.2 78 176-258 349-427 (508)
337 TIGR03545 conserved hypothetic 45.0 3.3E+02 0.0072 29.5 12.6 93 317-409 174-272 (555)
338 PF14282 FlxA: FlxA-like prote 44.8 1.7E+02 0.0036 24.1 8.2 21 326-346 20-40 (106)
339 cd07673 F-BAR_FCHO2 The F-BAR 44.8 3E+02 0.0065 26.7 18.0 35 391-425 188-222 (269)
340 COG5570 Uncharacterized small 44.5 59 0.0013 23.2 4.4 13 154-166 5-17 (57)
341 KOG2264 Exostosin EXT1L [Signa 44.5 1.6E+02 0.0034 31.7 9.5 31 136-166 89-119 (907)
342 PF08424 NRDE-2: NRDE-2, neces 44.0 65 0.0014 32.1 6.7 82 25-130 107-189 (321)
343 PRK05431 seryl-tRNA synthetase 43.8 2.1E+02 0.0046 29.8 10.6 25 140-164 28-52 (425)
344 PF13815 Dzip-like_N: Iguana/D 43.7 1.7E+02 0.0036 24.5 8.2 25 106-130 52-76 (118)
345 PF09787 Golgin_A5: Golgin sub 43.2 4.4E+02 0.0096 28.1 31.7 18 149-166 118-135 (511)
346 PF04312 DUF460: Protein of un 43.0 22 0.00047 30.9 2.6 43 4-47 58-100 (138)
347 PF07352 Phage_Mu_Gam: Bacteri 42.9 1.4E+02 0.0031 26.0 8.0 62 373-437 5-66 (149)
348 PLN03229 acetyl-coenzyme A car 42.5 5.3E+02 0.012 28.9 21.9 20 239-258 594-613 (762)
349 TIGR01069 mutS2 MutS2 family p 41.7 5.7E+02 0.012 29.0 15.5 6 87-92 99-104 (771)
350 smart00546 CUE Domain that may 41.6 24 0.00052 23.8 2.2 18 5-22 12-29 (43)
351 PF09744 Jnk-SapK_ap_N: JNK_SA 41.4 2.6E+02 0.0056 24.9 14.9 15 84-98 8-22 (158)
352 PF13747 DUF4164: Domain of un 41.3 1.8E+02 0.004 23.2 9.6 49 203-251 39-87 (89)
353 PF14389 Lzipper-MIP1: Leucine 41.2 1.5E+02 0.0033 23.6 7.1 31 210-240 54-84 (88)
354 PF07851 TMPIT: TMPIT-like pro 41.0 2.2E+02 0.0047 28.7 9.6 29 133-161 4-32 (330)
355 PF06810 Phage_GP20: Phage min 40.8 2.6E+02 0.0056 24.8 12.1 43 216-259 26-68 (155)
356 PF02994 Transposase_22: L1 tr 40.7 87 0.0019 32.0 7.1 42 357-398 144-185 (370)
357 PRK10803 tol-pal system protei 40.7 1.8E+02 0.0038 28.2 8.9 44 178-221 57-100 (263)
358 PRK09343 prefoldin subunit bet 40.6 2.2E+02 0.0049 24.0 12.3 37 215-251 76-112 (121)
359 PF13700 DUF4158: Domain of un 40.0 1.5E+02 0.0032 26.3 7.8 22 4-31 11-32 (166)
360 TIGR02231 conserved hypothetic 39.2 4.7E+02 0.01 27.9 12.8 27 137-163 75-101 (525)
361 KOG4603 TBP-1 interacting prot 39.2 2.9E+02 0.0064 24.9 12.9 99 329-437 83-186 (201)
362 KOG4571 Activating transcripti 39.0 2.3E+02 0.005 27.8 9.1 38 372-409 249-286 (294)
363 PRK03947 prefoldin subunit alp 39.0 2.5E+02 0.0054 24.0 12.8 32 135-166 8-39 (140)
364 PF07862 Nif11: Nitrogen fixat 38.9 29 0.00063 24.1 2.4 21 10-31 28-48 (49)
365 TIGR02977 phageshock_pspA phag 38.8 3.3E+02 0.0072 25.4 21.3 14 112-125 5-18 (219)
366 PF15035 Rootletin: Ciliary ro 38.8 3.1E+02 0.0067 25.0 13.6 97 315-425 85-181 (182)
367 PRK10246 exonuclease subunit S 38.7 7.1E+02 0.015 29.3 43.9 38 90-128 146-183 (1047)
368 PRK09973 putative outer membra 38.6 2E+02 0.0044 22.8 7.3 48 177-224 26-73 (85)
369 PF10018 Med4: Vitamin-D-recep 38.4 2.7E+02 0.0058 25.4 9.3 55 179-234 6-60 (188)
370 smart00503 SynN Syntaxin N-ter 38.0 2.2E+02 0.0047 23.1 11.7 17 259-275 92-108 (117)
371 PLN02320 seryl-tRNA synthetase 37.9 3.1E+02 0.0067 29.3 10.8 23 140-162 93-115 (502)
372 PF07200 Mod_r: Modifier of ru 37.9 2.7E+02 0.0058 24.1 15.0 35 219-253 98-132 (150)
373 PF15397 DUF4618: Domain of un 37.9 3.9E+02 0.0084 25.9 28.9 31 209-239 80-110 (258)
374 KOG0972 Huntingtin interacting 37.7 4.1E+02 0.0089 26.2 14.7 90 329-419 277-369 (384)
375 PRK02119 hypothetical protein; 37.7 1.9E+02 0.004 22.2 7.0 7 151-157 13-19 (73)
376 PF12711 Kinesin-relat_1: Kine 37.6 2.1E+02 0.0046 22.8 9.6 41 150-198 27-67 (86)
377 PF14712 Snapin_Pallidin: Snap 37.3 2E+02 0.0044 22.6 9.3 38 180-217 12-49 (92)
378 PRK10698 phage shock protein P 37.2 3.6E+02 0.0078 25.4 23.1 42 309-350 97-138 (222)
379 PF04642 DUF601: Protein of un 37.2 2.2E+02 0.0047 27.4 8.3 7 123-129 162-168 (311)
380 KOG1853 LIS1-interacting prote 36.6 4E+02 0.0086 25.7 17.5 32 138-169 50-81 (333)
381 PRK00409 recombination and DNA 36.6 6.8E+02 0.015 28.4 16.5 21 1-21 1-21 (782)
382 COG1382 GimC Prefoldin, chaper 36.5 2.7E+02 0.0058 23.7 11.4 24 214-237 74-97 (119)
383 PRK00888 ftsB cell division pr 36.4 1.8E+02 0.0038 24.0 7.0 29 135-163 29-57 (105)
384 PF10267 Tmemb_cc2: Predicted 35.8 5.1E+02 0.011 26.7 17.2 70 329-398 248-318 (395)
385 PF02841 GBP_C: Guanylate-bind 35.6 4.3E+02 0.0094 25.8 14.4 110 296-405 182-297 (297)
386 PF05911 DUF869: Plant protein 35.4 7E+02 0.015 28.2 27.2 49 190-238 510-558 (769)
387 PF05377 FlaC_arch: Flagella a 35.4 1.7E+02 0.0038 21.2 5.9 14 413-426 38-51 (55)
388 TIGR00414 serS seryl-tRNA synt 35.1 3.8E+02 0.0082 27.9 10.9 26 139-164 29-54 (418)
389 PF10205 KLRAQ: Predicted coil 34.8 2.6E+02 0.0056 23.0 9.5 46 182-227 26-71 (102)
390 PF13094 CENP-Q: CENP-Q, a CEN 34.6 2.8E+02 0.0061 24.4 8.7 41 151-191 38-78 (160)
391 PRK15396 murein lipoprotein; P 34.5 2.2E+02 0.0048 22.2 7.2 13 113-125 3-15 (78)
392 PF08647 BRE1: BRE1 E3 ubiquit 34.5 2.5E+02 0.0053 22.6 12.9 45 203-247 31-75 (96)
393 PF14630 ORC5_C: Origin recogn 34.4 59 0.0013 31.5 4.5 43 5-52 2-45 (271)
394 PF12001 DUF3496: Domain of un 34.1 2.8E+02 0.0061 23.2 9.0 31 180-210 5-36 (111)
395 KOG4593 Mitotic checkpoint pro 33.7 7E+02 0.015 27.7 38.8 19 417-435 436-454 (716)
396 TIGR01010 BexC_CtrB_KpsE polys 33.7 5E+02 0.011 26.0 14.6 23 174-196 241-263 (362)
397 PLN02678 seryl-tRNA synthetase 33.7 2.4E+02 0.0051 29.7 9.0 16 217-232 85-100 (448)
398 PF08232 Striatin: Striatin fa 33.6 2.9E+02 0.0063 23.8 8.2 72 118-195 2-73 (134)
399 PF05529 Bap31: B-cell recepto 33.6 3.7E+02 0.008 24.4 9.5 68 326-393 119-190 (192)
400 PF13949 ALIX_LYPXL_bnd: ALIX 33.5 4.5E+02 0.0097 25.4 24.1 76 205-280 31-115 (296)
401 PF03961 DUF342: Protein of un 32.8 4.1E+02 0.009 27.7 10.9 27 140-166 334-360 (451)
402 TIGR01554 major_cap_HK97 phage 32.5 2.4E+02 0.0051 28.7 8.9 8 153-160 5-12 (378)
403 KOG0982 Centrosomal protein Nu 32.5 6E+02 0.013 26.5 34.0 98 83-191 161-259 (502)
404 PF06428 Sec2p: GDP/GTP exchan 32.4 75 0.0016 26.0 4.1 65 178-242 18-83 (100)
405 cd00176 SPEC Spectrin repeats, 32.4 3.5E+02 0.0076 23.8 20.9 17 242-258 72-88 (213)
406 cd07665 BAR_SNX1 The Bin/Amphi 32.4 4.5E+02 0.0097 25.0 29.4 112 175-302 22-134 (234)
407 COG1422 Predicted membrane pro 32.2 4.2E+02 0.009 24.6 10.8 23 100-122 34-56 (201)
408 PF15188 CCDC-167: Coiled-coil 31.7 2.6E+02 0.0057 22.2 7.9 30 205-234 38-67 (85)
409 PF08172 CASP_C: CASP C termin 31.5 1.6E+02 0.0034 28.4 6.8 33 183-215 94-126 (248)
410 PF12808 Mto2_bdg: Micro-tubul 31.4 2E+02 0.0043 20.6 6.0 32 337-368 2-33 (52)
411 PRK10803 tol-pal system protei 31.3 2.7E+02 0.0058 26.9 8.5 25 358-382 62-86 (263)
412 smart00540 LEM in nuclear memb 31.2 94 0.002 21.4 3.8 39 5-50 2-41 (44)
413 PRK05431 seryl-tRNA synthetase 30.8 3.3E+02 0.0072 28.3 9.6 28 208-235 71-98 (425)
414 PF02994 Transposase_22: L1 tr 30.6 89 0.0019 31.9 5.3 6 240-245 195-200 (370)
415 KOG0517 Beta-spectrin [Cytoske 30.5 1.2E+03 0.026 29.4 36.5 22 411-432 1091-1112(2473)
416 KOG0288 WD40 repeat protein Ti 30.1 6.4E+02 0.014 26.1 16.5 61 182-242 13-73 (459)
417 KOG4809 Rab6 GTPase-interactin 29.8 7.4E+02 0.016 26.7 28.3 49 200-248 363-411 (654)
418 KOG2629 Peroxisomal membrane a 29.8 3.7E+02 0.0081 26.4 8.9 71 174-247 121-191 (300)
419 TIGR02449 conserved hypothetic 29.7 2.5E+02 0.0053 21.2 8.9 22 199-220 24-45 (65)
420 PF08172 CASP_C: CASP C termin 29.4 5.2E+02 0.011 24.8 10.6 39 201-239 84-122 (248)
421 KOG4370 Ral-GTPase effector RL 28.7 6.9E+02 0.015 26.0 17.6 60 70-132 249-308 (514)
422 PRK00106 hypothetical protein; 28.6 7.7E+02 0.017 26.6 19.5 133 290-424 32-164 (535)
423 KOG4572 Predicted DNA-binding 28.4 9.2E+02 0.02 27.4 34.4 26 134-159 840-865 (1424)
424 PF04102 SlyX: SlyX; InterPro 28.2 2.6E+02 0.0056 21.0 6.9 18 331-348 3-20 (69)
425 PF10211 Ax_dynein_light: Axon 28.2 4.7E+02 0.01 23.9 14.8 18 81-98 35-52 (189)
426 KOG1850 Myosin-like coiled-coi 28.0 6.2E+02 0.013 25.3 30.4 61 159-220 114-174 (391)
427 COG0691 SmpB tmRNA-binding pro 27.9 15 0.00032 32.3 -0.8 26 92-118 59-84 (153)
428 PF10883 DUF2681: Protein of u 27.9 3.2E+02 0.0068 21.8 7.2 47 116-168 12-58 (87)
429 PHA02119 hypothetical protein 27.8 49 0.0011 25.0 2.0 29 4-33 49-77 (87)
430 PF10359 Fmp27_WPPW: RNA pol I 27.7 2.2E+02 0.0048 30.1 7.8 56 100-168 129-184 (475)
431 PF09744 Jnk-SapK_ap_N: JNK_SA 27.4 4.5E+02 0.0097 23.4 15.2 9 183-191 90-98 (158)
432 PRK14127 cell division protein 27.2 2.4E+02 0.0052 23.5 6.3 60 100-168 5-65 (109)
433 KOG2180 Late Golgi protein sor 27.0 9.2E+02 0.02 26.9 20.5 133 90-251 9-143 (793)
434 KOG4657 Uncharacterized conser 27.0 5.5E+02 0.012 24.3 19.9 30 409-438 128-163 (246)
435 KOG0972 Huntingtin interacting 26.9 6.2E+02 0.014 25.0 13.6 33 205-237 289-321 (384)
436 PF10805 DUF2730: Protein of u 26.9 3.6E+02 0.0077 22.1 8.3 15 117-131 15-29 (106)
437 PF12709 Kinetocho_Slk19: Cent 26.7 3.3E+02 0.0072 21.7 7.4 21 328-348 52-72 (87)
438 PF15254 CCDC14: Coiled-coil d 26.7 9.6E+02 0.021 27.1 23.1 27 177-203 429-455 (861)
439 PF04582 Reo_sigmaC: Reovirus 26.5 1.4E+02 0.0031 29.8 5.7 38 200-237 116-153 (326)
440 KOG3647 Predicted coiled-coil 26.3 6.1E+02 0.013 24.7 15.7 55 346-400 108-162 (338)
441 KOG3433 Protein involved in me 26.2 5.1E+02 0.011 23.7 10.6 55 328-382 84-141 (203)
442 KOG4001 Axonemal dynein light 26.1 5.4E+02 0.012 24.0 8.8 25 176-200 193-217 (259)
443 TIGR02894 DNA_bind_RsfA transc 25.5 4.9E+02 0.011 23.3 14.5 24 120-143 18-41 (161)
444 PF14257 DUF4349: Domain of un 25.1 2.9E+02 0.0062 26.5 7.6 14 84-97 64-77 (262)
445 PF04728 LPP: Lipoprotein leuc 25.1 2.8E+02 0.006 20.2 7.7 44 386-429 11-54 (56)
446 PF06476 DUF1090: Protein of u 24.9 4.2E+02 0.009 22.2 10.8 63 309-372 48-111 (115)
447 PF11068 YlqD: YlqD protein; 24.8 4.5E+02 0.0098 22.6 10.1 48 329-376 24-75 (131)
448 cd07651 F-BAR_PombeCdc15_like 24.8 5.8E+02 0.013 23.9 20.9 19 404-422 183-201 (236)
449 KOG4687 Uncharacterized coiled 24.7 6.6E+02 0.014 24.5 12.4 47 184-230 85-131 (389)
450 PF07462 MSP1_C: Merozoite sur 24.6 1.7E+02 0.0036 31.3 5.9 34 411-444 537-570 (574)
451 TIGR01005 eps_transp_fam exopo 24.6 1E+03 0.022 26.6 24.1 24 79-102 78-101 (754)
452 COG5293 Predicted ATPase [Gene 24.4 8.6E+02 0.019 25.7 30.8 55 202-256 254-312 (591)
453 cd07649 F-BAR_GAS7 The F-BAR ( 24.3 6.1E+02 0.013 24.0 19.0 19 273-291 29-47 (233)
454 PF05278 PEARLI-4: Arabidopsis 24.3 6.7E+02 0.015 24.4 17.5 12 131-142 167-178 (269)
455 KOG3850 Predicted membrane pro 24.3 7.9E+02 0.017 25.2 17.1 68 184-257 262-332 (455)
456 cd07657 F-BAR_Fes_Fer The F-BA 24.3 6.2E+02 0.013 24.0 22.9 54 245-303 164-217 (237)
457 PF04420 CHD5: CHD5-like prote 24.2 2.6E+02 0.0056 24.8 6.5 59 182-240 40-103 (161)
458 PF15112 DUF4559: Domain of un 24.1 7.2E+02 0.016 24.7 13.1 43 77-126 120-177 (307)
459 PRK15396 murein lipoprotein; P 24.1 3.5E+02 0.0076 21.1 7.3 46 384-429 31-76 (78)
460 KOG4797 Transcriptional regula 23.9 2.7E+02 0.0058 23.1 5.8 29 219-249 76-104 (123)
461 PRK14471 F0F1 ATP synthase sub 23.7 4.6E+02 0.01 23.0 8.1 55 373-427 30-84 (164)
462 COG5250 RPB4 RNA polymerase II 23.7 2.6E+02 0.0057 23.5 5.7 28 100-132 49-76 (138)
463 PF11068 YlqD: YlqD protein; 23.4 4.8E+02 0.01 22.4 9.9 52 334-385 22-77 (131)
464 PF08647 BRE1: BRE1 E3 ubiquit 23.4 3.9E+02 0.0085 21.4 11.2 15 150-164 27-41 (96)
465 PF04949 Transcrip_act: Transc 23.3 5.2E+02 0.011 22.8 15.4 59 179-237 88-146 (159)
466 PF15272 BBP1_C: Spindle pole 23.2 6E+02 0.013 23.5 19.7 12 407-418 136-147 (196)
467 PF09403 FadA: Adhesion protei 23.1 4.8E+02 0.01 22.3 13.0 16 138-153 25-40 (126)
468 PF04977 DivIC: Septum formati 22.9 1.8E+02 0.0039 21.9 4.7 12 183-194 39-50 (80)
469 PRK08476 F0F1 ATP synthase sub 22.9 4.9E+02 0.011 22.4 16.4 27 117-143 10-37 (141)
470 KOG3850 Predicted membrane pro 22.6 8.5E+02 0.018 25.0 16.0 102 296-400 262-368 (455)
471 PF03960 ArsC: ArsC family; I 22.4 72 0.0016 26.2 2.4 38 83-122 7-46 (110)
472 PHA01750 hypothetical protein 22.3 3.4E+02 0.0075 20.4 7.7 17 123-139 24-40 (75)
473 KOG3433 Protein involved in me 22.3 6.1E+02 0.013 23.2 11.4 23 186-208 120-142 (203)
474 KOG3564 GTPase-activating prot 22.1 9.6E+02 0.021 25.5 11.8 12 116-127 4-15 (604)
475 PRK14143 heat shock protein Gr 22.1 7E+02 0.015 23.8 9.4 69 175-252 67-135 (238)
476 TIGR03798 ocin_TIGR03798 bacte 22.1 81 0.0018 23.3 2.4 21 10-31 26-46 (64)
477 TIGR00219 mreC rod shape-deter 22.0 2.4E+02 0.0051 27.7 6.3 41 177-220 68-108 (283)
478 PRK00295 hypothetical protein; 21.9 3.5E+02 0.0077 20.3 6.9 51 145-195 3-53 (68)
479 PLN02320 seryl-tRNA synthetase 21.8 6.2E+02 0.013 27.1 9.7 66 175-240 93-167 (502)
480 KOG2629 Peroxisomal membrane a 21.6 7.8E+02 0.017 24.2 11.5 100 117-219 91-191 (300)
481 KOG2077 JNK/SAPK-associated pr 21.6 3.4E+02 0.0074 29.3 7.5 55 185-239 325-379 (832)
482 PRK03947 prefoldin subunit alp 21.6 5.1E+02 0.011 22.1 12.4 93 140-232 6-137 (140)
483 PF04420 CHD5: CHD5-like prote 21.5 4.5E+02 0.0098 23.3 7.5 56 339-394 40-103 (161)
484 PRK14153 heat shock protein Gr 21.3 6.5E+02 0.014 23.2 8.7 71 173-252 31-101 (194)
485 PF14282 FlxA: FlxA-like prote 21.2 4.7E+02 0.01 21.5 8.3 64 181-244 18-85 (106)
486 PF03961 DUF342: Protein of un 21.2 5.6E+02 0.012 26.8 9.3 65 179-243 331-408 (451)
487 PF05384 DegS: Sensor protein 21.0 6E+02 0.013 22.6 18.2 129 128-256 15-154 (159)
488 TIGR02977 phageshock_pspA phag 20.8 6.9E+02 0.015 23.2 21.7 157 241-397 22-185 (219)
489 COG3352 FlaC Putative archaeal 20.5 6E+02 0.013 22.5 12.0 121 114-234 3-132 (157)
490 PRK14471 F0F1 ATP synthase sub 20.5 5.9E+02 0.013 22.4 17.7 133 104-242 1-137 (164)
491 PF02096 60KD_IMP: 60Kd inner 20.4 1.6E+02 0.0035 26.8 4.6 44 81-128 82-136 (198)
492 PF01166 TSC22: TSC-22/dip/bun 20.3 1.5E+02 0.0033 21.7 3.3 38 131-168 5-42 (59)
493 KOG0245 Kinesin-like protein [ 20.2 1.1E+03 0.023 27.8 11.2 128 42-218 304-441 (1221)
494 PHA01750 hypothetical protein 20.2 3.8E+02 0.0082 20.1 5.4 50 166-215 26-75 (75)
495 PF13863 DUF4200: Domain of un 20.2 5.1E+02 0.011 21.5 15.2 103 308-410 4-106 (126)
496 PRK15366 type III secretion sy 20.1 4.3E+02 0.0093 20.6 7.4 59 233-291 4-64 (80)
No 1
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.9e-55 Score=424.91 Aligned_cols=427 Identities=28% Similarity=0.426 Sum_probs=332.5
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH-HHhcccCcccchhcchHhhhcCCCchhHHHHH
Q 013334 1 MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSV 79 (445)
Q Consensus 1 ms~~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~ 79 (445)
|+.|+||+|+++|||.||++|||+ ++..+|..|||++|..+|+.|+ .|||++.+ ..++..+.+....+||++|.+|+
T Consensus 1 ~~~~~fP~L~~aEIv~~l~~~~i~-~at~ei~~PTs~~~~~lYe~il~~~mgl~~~-~l~~r~n~~~~~~EN~ei~~~sL 78 (446)
T KOG4438|consen 1 RNAYEFPRLSVAEIVICLKDAQIA-SATEEILTPTSDYVSPLYEVILEYYMGLDEE-ELLQRDNEALEQLENPEIHAESL 78 (446)
T ss_pred CCccccCCCCHHHHHHHHHhcCcc-cchhhccCCCcccchhHHHHHHHHHHhhhHH-HHhhhhHHHHhcccCHHHHHHHH
Confidence 789999999999999999999996 6666699999999999999999 99999865 34444555777789999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 013334 80 QIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQL 159 (445)
Q Consensus 80 ~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l 159 (445)
.+..|+++|..|+..|||+ ||++.||++|++.||.+||||||||++||++|+..|++.+..++.+.+.+.++.+.+.++
T Consensus 79 ~~~~l~ki~~~Fl~~i~v~-dF~~~DLlkPes~Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~ 157 (446)
T KOG4438|consen 79 QFKLLCKILDMFLMNIGVL-DFSFKDLLKPESSRTQRFLSAVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQA 157 (446)
T ss_pred HHHHHHHHHHHHHHhcCcC-CCchhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 160 NAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA-LDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~-l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
..++..+......+.+.++++++++++|.+.|.+++++|+++..++..++..... ....++.+.+.++++++....|++
T Consensus 158 ~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lkt 237 (446)
T KOG4438|consen 158 LKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKT 237 (446)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887777889999999999999999999999999999999999988888 556777888888899999999999
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 013334 239 KIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ----MQAILEQVNSAKSIEKDYK 314 (445)
Q Consensus 239 ~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~----l~~~~e~~~~~k~~e~~~k 314 (445)
+||+||++|+..+++|+..+.+ ++.+|..|++|...++. | ...+.++... +..+.+.+-.....+....
T Consensus 238 qIV~sPeKL~~~leemk~~l~k----~k~~~~~l~~K~~iL~e--k-v~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v 310 (446)
T KOG4438|consen 238 QIVQSPEKLKEALEEMKDLLQK----EKSAMVELQEKAKILEE--K-VTNLQTIEKELKALLKKISSDGVEYDSLETKVV 310 (446)
T ss_pred HHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh--H-hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 9999999999999999999855 44566666665544431 1 0111111111 1111222211111222222
Q ss_pred HHHHhhh--hhHHhH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 013334 315 SLKARLN--DDVVLD---KSLEAKLIERQGKVEQLD-ELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE 388 (445)
Q Consensus 315 ~lk~kl~--~~~~~~---~~L~~kl~e~q~k~e~l~-e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e 388 (445)
.++.-+. ++.... ...-.....|..++-.+. +.....+--..+..++..+.+....+.+......+++....++
T Consensus 311 ~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie 390 (446)
T KOG4438|consen 311 ELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIE 390 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhccHHHHHH
Confidence 2221111 111100 011112233444444444 2233333334445566777777777777777777777777777
Q ss_pred HHHHHHHHHHh--hHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334 389 AVVTEVDAITS--KTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 389 ~~~~~v~~le~--~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~ 437 (445)
....++..++. .+...+..++.++.+|..+|.++..||+.|+++|...+
T Consensus 391 ~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AEl~~~m 441 (446)
T KOG4438|consen 391 EKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAELKRIM 441 (446)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888 99999999999999999999999999999999997654
No 2
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=100.00 E-value=6.2e-40 Score=289.97 Aligned_cols=140 Identities=40% Similarity=0.738 Sum_probs=103.5
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH-HHhcccCcccchhcchHhhhcCCCchhHHHHHH
Q 013334 2 SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQ 80 (445)
Q Consensus 2 s~~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~ 80 (445)
.+|+||+|+++||++||++||++ +|++||.||||++|++||++|| .++|++.++. .++.+++.+.++||++|.++++
T Consensus 5 ~~~~FP~L~~~eIv~~L~~~~~~-~t~~dl~kPt~e~v~~ly~~~L~~~~g~~~e~~-~~~~~~~~~~~~~pe~~~~~i~ 82 (146)
T PF03800_consen 5 NKYSFPLLSPDEIVNCLQECGIP-VTEEDLKKPTPEFVQKLYERFLETFLGISPEDI-EQPMFEALESLEYPELHEESIP 82 (146)
T ss_dssp ------S--HHHHHHHHHHHT---HHHHC--G--HHHHHHHHHHHHHHHHT--CGGG---C---TT---S-GGGGTTTHH
T ss_pred ccCCCCCCCHHHHHHHHHHCCCC-cCHHHHcCCCHHHHHHHHHHHHHHHHCcCHHHH-hhhhHHHHhcccchhhHHHHHH
Confidence 36999999999999999999995 9999999999999999999999 9999976544 3467888899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHh
Q 013334 81 IMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTR 144 (445)
Q Consensus 81 ~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~ 144 (445)
+++||++|++||..|||+ |||++||++|+|+||+++|||||||++||+++++.|++++++++.
T Consensus 83 ~l~l~~~~~~~~~~~gv~-DF~l~Dl~~P~~~R~~~~LSalINF~~Fre~~~~~~~~~~~~~e~ 145 (146)
T PF03800_consen 83 LLNLFRHLQKFLKDCGVP-DFSLSDLLKPDPKRTRRILSALINFARFREERMDEYEEIIEEFEE 145 (146)
T ss_dssp HHHHHHHHHHHHHHTT------HHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHcCCC-CCCHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 999999999999999999999999999999999999999988754
No 3
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=2.4e-05 Score=80.82 Aligned_cols=226 Identities=15% Similarity=0.216 Sum_probs=112.5
Q ss_pred HHHHHHHHhhcCCC-CCChhhhCCCChhHHHHHHHHHHHHhcccCc------ccchh------cchH----hhhcCCCch
Q 013334 11 ATEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHE------DDQGQ------LDFA----ALEQLENPD 73 (445)
Q Consensus 11 ~~EIv~~L~~~~i~-~~t~~dl~~Pt~~~v~~ly~~~l~~~~~~~~------e~~~~------~~~~----~~~~l~~pe 73 (445)
.+.|.++|...|++ .++..-+.+|+.--...+|.++..+++-..+ +.-++ +||. .+....-|.
T Consensus 76 ~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH 155 (581)
T KOG0995|consen 76 IRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPH 155 (581)
T ss_pred HHHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCC
Confidence 35788899999983 3899999999999999999988877743211 11111 1221 111112233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHH-HHHH-HHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHH
Q 013334 74 LHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE-YFLS-AILNFCLYKDTKMNLLRPIAEDLTRLDEQRSE 151 (445)
Q Consensus 74 ~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~-~iLS-alINF~rFre~~~~~~~~~~~e~~~l~~~~~~ 151 (445)
.+..-++.+.+..-|-++-...--. - +.+=-.|.-+-.. -++- ++=-|..|...--+ +.+..+++.....+...
T Consensus 156 ~WP~iL~mlhWlvdlI~~~t~~v~~--~-~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~ 231 (581)
T KOG0995|consen 156 NWPHILGMLHWLVDLIRINTALVED--S-PLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFT 231 (581)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHhhc--c-chhccchHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHH
Confidence 3333344444444443332222111 0 0111122222222 2222 23356666655433 33333333322222121
Q ss_pred -HHHHHHHHHHHHHHHHH---HHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 152 -LEDKISQLNAEIAAYNE---VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 152 -l~~~i~~l~~~~~~~~~---~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
+-.+|+.+...+..+.+ .++......+-++.....|+..+..+..--..+......+......+..+|+..+.++.
T Consensus 232 ~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e 311 (581)
T KOG0995|consen 232 SIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIE 311 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333333322 22333334555566666676666666555455555555666666666666666666666
Q ss_pred HHHHHHHHHHhhh
Q 013334 228 QSVQQNADLRSKI 240 (445)
Q Consensus 228 ~l~qe~~~L~~~I 240 (445)
.+.+++..|+.+|
T Consensus 312 ~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 312 KLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776554
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.83 E-value=6.3e-05 Score=88.70 Aligned_cols=271 Identities=18% Similarity=0.248 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013334 153 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 153 ~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe 232 (445)
.++-..+...+.+........+.....++.+...+++++..+++.-..+...+.++..++.....++..++.++..+...
T Consensus 900 ~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~ 979 (1930)
T KOG0161|consen 900 RAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN 979 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333333444455555555566666666555555556666666666666666666666555555
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH------HHHHH----hHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 013334 233 NADLRSKIVQSPEKLQRTLEEKKSIREEARDAE------KLAMQ----SFQEKTTTLEVYQKTLKKMSKQS-------AQ 295 (445)
Q Consensus 233 ~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e------~~~~q----~~q~k~~~~e~~~k~~~~l~~~~-------~~ 295 (445)
+++|...--.=-++++...+++...-++++... ...++ ++.......-.+.|..+++...+ ..
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~ 1059 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE 1059 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555542211111111111111111111111110 01111 11111112222222222222222 11
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH
Q 013334 296 MQA-ILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---KSEDATRAFENVKL 371 (445)
Q Consensus 296 l~~-~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~~eel~~~~~~lke 371 (445)
+.. .++--+.++..+.++..++.++++.......++.++.+++.++.+|.+.+...+..+++ ...++...+++++.
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12223455667788889999999999999999999999999999999999976666655 78899999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHH
Q 013334 372 EMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 423 (445)
Q Consensus 372 e~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~ 423 (445)
+++...+.+.+..........++..+...+.....+++..+..+...+..-.
T Consensus 1140 ~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~ 1191 (1930)
T KOG0161|consen 1140 ELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSL 1191 (1930)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999988888777766666777777777766666666666666665554433
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.77 E-value=0.00076 Score=78.60 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCCCCCcc--------cccCCCcchHHHHHHHHHHHHhhHhhhhh---hhHHHHHHHHhHHHHHHHHHH
Q 013334 86 SMVKEVVTTVNCPMNFTLK--------DLIRPDATRTEYFLSAILNFCLYKDTKMN---LLRPIAEDLTRLDEQRSELED 154 (445)
Q Consensus 86 ~~~~~~l~~~gv~~DFt~~--------DL~~P~~~R~~~iLSalINF~rFre~~~~---~~~~~~~e~~~l~~~~~~l~~ 154 (445)
..+..++..+|++ .-++. .++.-.|.--+.+|--+.+...|...... .+..+.+.+..+..+...+..
T Consensus 120 ~~~~~~l~~~~~~-~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~ 198 (1164)
T TIGR02169 120 SEIHDFLAAAGIY-PEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQ 198 (1164)
T ss_pred HHHHHHHHHcCCC-cCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888875 32222 44444566666788888888888655443 233333344444444444444
Q ss_pred HHHHHHH
Q 013334 155 KISQLNA 161 (445)
Q Consensus 155 ~i~~l~~ 161 (445)
++..+..
T Consensus 199 q~~~l~~ 205 (1164)
T TIGR02169 199 QLERLRR 205 (1164)
T ss_pred HHHHHHH
Confidence 4444443
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=98.66 E-value=0.00085 Score=76.10 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=24.2
Q ss_pred HHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHh
Q 013334 89 KEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKD 129 (445)
Q Consensus 89 ~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre 129 (445)
.-|...+.|+ .-.+..++.+ |.--+.+|..+++.-+|..
T Consensus 124 ~~f~~~~~~~-Qg~~~~~~~~-~~~r~~~~~~~~~~~~~~~ 162 (880)
T PRK03918 124 HVFLNAIYIR-QGEIDAILES-DESREKVVRQILGLDDYEN 162 (880)
T ss_pred HHhceeEEEe-ccchHHHhcC-cHHHHHHHHHHhCCHHHHH
Confidence 3444555555 5556666664 4444678899988777733
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.61 E-value=0.0018 Score=75.44 Aligned_cols=44 Identities=7% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCC-CCC------cccccCCCcchHHHHHHHHHHHHhhHhhh
Q 013334 88 VKEVVTTVNCPM-NFT------LKDLIRPDATRTEYFLSAILNFCLYKDTK 131 (445)
Q Consensus 88 ~~~~l~~~gv~~-DFt------~~DL~~P~~~R~~~iLSalINF~rFre~~ 131 (445)
+..++..+|+.. +|+ +..|...+|+..+.+|.-+++...|.+.+
T Consensus 124 ~~~~l~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1179)
T TIGR02168 124 IQDLFLDTGLGKRSYSIIEQGKISEIIEAKPEERRAIFEEAAGISKYKERR 174 (1179)
T ss_pred HHHHHhccCCCcccchheecccHHHHHcCCHHHHHHHHHHHccHHHHHHHH
Confidence 457777777641 221 12334446777777787778877776544
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.58 E-value=0.0019 Score=75.33 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
.+...+..++..+......+......+..+...+...+..+...+..+..++..+..
T Consensus 730 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~ 786 (1164)
T TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555555555555555555555555443
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.53 E-value=0.002 Score=74.97 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 013334 411 KLQELASKAEEIVEKFQQY 429 (445)
Q Consensus 411 ei~~i~~~y~~l~~~~~~Y 429 (445)
++..+......|..++..|
T Consensus 966 ~~~~l~~~i~~lg~aiee~ 984 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKEL 984 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 3444444444444454444
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.44 E-value=0.0057 Score=69.51 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 206 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 206 ~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
..+..+...+..++..+...+......+..++
T Consensus 415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 415 EELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.40 E-value=0.0088 Score=67.94 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhh
Q 013334 90 EVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLY 127 (445)
Q Consensus 90 ~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rF 127 (445)
.|...+.|+ -=.+..++.-+|..-+.++.-+.|.-+|
T Consensus 128 ~f~~~~~i~-Qge~~~~l~~~p~~R~~ii~~l~~l~~~ 164 (880)
T PRK02224 128 AFVNCAYVR-QGEVNKLINATPSDRQDMIDDLLQLGKL 164 (880)
T ss_pred HhcceeEee-ccChHHHHcCCHHHHHHHHHHHhCCHHH
Confidence 344455555 5557788887888888999999986665
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.39 E-value=0.0033 Score=62.52 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=62.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 137 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 215 (445)
Q Consensus 137 ~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~-~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l 215 (445)
.+-+.+....++...|+.....|..+|..+...... ..+.-.-.+.++..++..|..+......+..++..++.+...+
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 344455555555566666666666666666554222 2223344566777777777777777777777777777777777
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 216 DEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 216 ~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
..+++........+..++..|+..
T Consensus 88 r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 88 RRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 777777766666677777776633
No 13
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=0.0041 Score=62.50 Aligned_cols=126 Identities=33% Similarity=0.446 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013334 296 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDEL--QQQLEKERNLKSEDATRAFENVKLEM 373 (445)
Q Consensus 296 l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~--~~~~~~e~~~~~eel~~~~~~lkee~ 373 (445)
-.-+++.+++++.++.++++..+++++.++....++...+.+.. ...|+.+ .+.+..+...+.+++.+++..++.+.
T Consensus 271 ~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke-~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek 349 (446)
T KOG4438|consen 271 AKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKE-ILELEDQIELNQLELEKLKMFENLTKQLNELKKEK 349 (446)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456888999999999999999999999888888888777644 4455555 44566666777899999999999888
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHH
Q 013334 374 ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVE 424 (445)
Q Consensus 374 e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~ 424 (445)
..-.++...+.. +.+.+.++.+..+.+.++....+-+..+..+|..+..
T Consensus 350 ~~~~Qd~~~r~~--E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~ 398 (446)
T KOG4438|consen 350 ESRRQDLENRKT--ESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKK 398 (446)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHH
Confidence 888777776544 6677788887777777888777777777777765543
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.33 E-value=0.016 Score=67.78 Aligned_cols=79 Identities=14% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCCCCCc--------ccccCCCcchHHHHH---HHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHH
Q 013334 85 YSMVKEVVTTVNCPMNFTL--------KDLIRPDATRTEYFL---SAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELE 153 (445)
Q Consensus 85 ~~~~~~~l~~~gv~~DFt~--------~DL~~P~~~R~~~iL---SalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~ 153 (445)
++-+..+|...|+. .=++ ..|+.-.|.-.+.++ +|+.-|-.=++.....+....+.++.+......+.
T Consensus 121 ~~dI~~l~~~~gi~-~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~ 199 (1163)
T COG1196 121 LKDIQDLLADSGIG-KESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELE 199 (1163)
T ss_pred HHHHHHHHHhcCCC-CCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888874 2222 255555666656665 45555555555555555555555554444445555
Q ss_pred HHHHHHHHHHH
Q 013334 154 DKISQLNAEIA 164 (445)
Q Consensus 154 ~~i~~l~~~~~ 164 (445)
.++..|..+..
T Consensus 200 ~~l~~L~~q~~ 210 (1163)
T COG1196 200 KQLEKLERQAE 210 (1163)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.32 E-value=0.013 Score=69.77 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=23.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
.+.++...+++|.+++.+|....+..+....+++..+.++...++.+...+.
T Consensus 1091 ~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1091 EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444443333
No 16
>PRK01156 chromosome segregation protein; Provisional
Probab=98.27 E-value=0.017 Score=65.76 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=17.9
Q ss_pred cccccCCCcchHHHHHHHHHHHHhhHh
Q 013334 103 LKDLIRPDATRTEYFLSAILNFCLYKD 129 (445)
Q Consensus 103 ~~DL~~P~~~R~~~iLSalINF~rFre 129 (445)
+..|+.-+|.--+.+|.-++++-.|..
T Consensus 140 ~~~l~~~~~~~r~~~ld~~~~~~~~~~ 166 (895)
T PRK01156 140 MDSLISGDPAQRKKILDEILEINSLER 166 (895)
T ss_pred hHHHHhCCHHHHHHHHHHHhChHHHHH
Confidence 344554445555678888888888854
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.26 E-value=0.0099 Score=62.46 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=10.7
Q ss_pred HHHHHHHcCCCCCCCcc
Q 013334 88 VKEVVTTVNCPMNFTLK 104 (445)
Q Consensus 88 ~~~~l~~~gv~~DFt~~ 104 (445)
+..--..||+.-.|.|+
T Consensus 95 v~~~g~V~G~S~pFqf~ 111 (546)
T PF07888_consen 95 VDQKGEVRGASTPFQFR 111 (546)
T ss_pred ECCCccEEEecCCcccC
Confidence 34445567775578776
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=0.023 Score=67.28 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHhhhh-----cCHHHHHH
Q 013334 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE------KFSQTEFDLVQSVQQNADLRSKIV-----QSPEKLQR 249 (445)
Q Consensus 181 ~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~------~l~~~~~~l~~l~qe~~~L~~~Iv-----~SPe~lk~ 249 (445)
+.+...+..++..+......+...+..++.+...+.. .|..+..++..+...++.|.+.+. .|++.|+.
T Consensus 750 ~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ 829 (1311)
T TIGR00606 750 RNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQ 829 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHH
Confidence 3444555555555554444444445555444433321 223334555555555555554322 46677777
Q ss_pred HHHHHHHHHHHH
Q 013334 250 TLEEKKSIREEA 261 (445)
Q Consensus 250 ~l~e~k~~~~~l 261 (445)
.+...+..+..+
T Consensus 830 ei~~~~~el~~l 841 (1311)
T TIGR00606 830 EKQEKQHELDTV 841 (1311)
T ss_pred HHHHHHHHHHHH
Confidence 777776666554
No 19
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.01 Score=61.83 Aligned_cols=217 Identities=13% Similarity=0.200 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----------
Q 013334 203 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDA-EKLAMQ----------- 270 (445)
Q Consensus 203 ~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~-e~~~~q----------- 270 (445)
.+.+....+++++...+..++.++..+.+++-.++..+..+-+.++..+-+..+.+-.++-. -..++.
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~ 411 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATN 411 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccc
Confidence 45556666666666666666666666666666666666666666666665555554333321 000100
Q ss_pred --hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 271 --SFQE--KTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDE 346 (445)
Q Consensus 271 --~~q~--k~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e 346 (445)
++.. +....+.+.-. -..+++..+..-.++...+.+...+++.......++-++..+..+.+..++
T Consensus 412 ~~d~k~~V~~~l~el~~ei----------~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 412 GVDLKSYVKPLLKELLDEI----------SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred cccchhHhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00001111100 112222333333344444444444444333334455556666666666666
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334 347 LQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 426 (445)
Q Consensus 347 ~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~ 426 (445)
.........+..++.+.+++..++....... ......++.++...+.+....+.+++++......+...|
T Consensus 482 e~eee~~k~~~E~e~le~~l~~l~l~~~~~m----------~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i 551 (581)
T KOG0995|consen 482 EAEEEWKKCRKEIEKLEEELLNLKLVLNTSM----------KEAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQI 551 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666666555554442 233445556666666777777777777766666666555
Q ss_pred HHhHhhhhhhccc
Q 013334 427 QQYTNSIGTLLPV 439 (445)
Q Consensus 427 ~~Y~~~~~~~~~~ 439 (445)
-..+..|...|+.
T Consensus 552 ~~~k~~iqs~le~ 564 (581)
T KOG0995|consen 552 SDFKVSIQSSLEN 564 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.21 E-value=0.015 Score=68.04 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 013334 408 GAAKLQELASKAEEIVEKFQQYTNSIG 434 (445)
Q Consensus 408 ~e~ei~~i~~~y~~l~~~~~~Y~~~~~ 434 (445)
+-.+.......|..|.+....+.....
T Consensus 968 Aiee~e~~~~r~~~l~~~~~dl~~a~~ 994 (1163)
T COG1196 968 AIEEYEEVEERYEELKSQREDLEEAKE 994 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544444433
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.20 E-value=0.03 Score=65.92 Aligned_cols=256 Identities=18% Similarity=0.195 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
++..+...+...+..+......++.....+..++..+...++....++..+..++..|..++..|-..+...-.-....-
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~ 170 (1822)
T KOG4674|consen 91 QLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQ 170 (1822)
T ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666667777777777777777777777777777777888887777777665553222222211
Q ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHH
Q 013334 259 EEARDAEKLAMQSF-QEKTTTLEVYQKTLKKMSKQSAQMQAILEQ-VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIE 336 (445)
Q Consensus 259 ~~l~~~e~~~~q~~-q~k~~~~e~~~k~~~~l~~~~~~l~~~~e~-~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e 336 (445)
...-+.. .-.+.+ |++........=..+++++-...+..+..+ ......++..+..++..+..-+...+.|..+..+
T Consensus 171 s~~vs~q-~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~e 249 (1822)
T KOG4674|consen 171 SEDVSSQ-LKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEE 249 (1822)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100100 000000 122111111111222333322233333222 1112222222322232222222223333333333
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 013334 337 RQGKVEQLDELQQ--------------QLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTK 402 (445)
Q Consensus 337 ~q~k~e~l~e~~~--------------~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~ 402 (445)
+..+++.+-..+. +.-....+..+-+.....++..++.+-.+.+.......+.......+....+.
T Consensus 250 Ls~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~ 329 (1822)
T KOG4674|consen 250 LSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLK 329 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333322 22222233445555566777777777778888877777888888888888899
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 013334 403 FVKESGAAKLQELASKAEEIVEKFQQYTNSIGT 435 (445)
Q Consensus 403 ~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~ 435 (445)
.++............++.+|.+.+..=.+....
T Consensus 330 e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~ 362 (1822)
T KOG4674|consen 330 ELEQSLSKLNEKLEKKVSRLEGELEDANDSLSA 362 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 999999999999999999999888776665544
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=0.032 Score=66.08 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhHHHHHHhc-HHHHHHHHHHHHH
Q 013334 389 AVVTEVDAITSKTKFVKESG-AAKLQELASKAEE 421 (445)
Q Consensus 389 ~~~~~v~~le~~~~~~~~~~-e~ei~~i~~~y~~ 421 (445)
.+.+.+..++.++..++... +.+.+.+...|..
T Consensus 1072 ~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrk 1105 (1311)
T TIGR00606 1072 LALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 33455555555555555555 3455555555544
No 23
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.16 E-value=0.0087 Score=58.00 Aligned_cols=228 Identities=18% Similarity=0.267 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
++.++++++...+.++......+-.++..+++...++...+..+-..+..+........ ..-.||..+.+.+..+....
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~ 123 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQ 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555543333333333333222 34467888888777664332
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH
Q 013334 259 EEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQ 338 (445)
Q Consensus 259 ~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q 338 (445)
.. +.=+...-...++ -..++.+.+...+...+....++++..+...++.+..+-...+..|-.++.+..
T Consensus 124 ~T-------~~L~~e~E~~lvq----~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~h 192 (294)
T COG1340 124 QT-------SVLTPEEERELVQ----KIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYH 192 (294)
T ss_pred Hh-------cCCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000000111 112244444444444445555555556666666665554444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHH--HHHHH
Q 013334 339 GKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAK--LQELA 416 (445)
Q Consensus 339 ~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~e--i~~i~ 416 (445)
.+|-.+-+.....+.+++. +..++..+...+.+...+.-..+..+..+...+..+.......+.....+ ...+.
T Consensus 193 e~m~k~~~~~De~Rkeade----~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ 268 (294)
T COG1340 193 EEMIKLFEEADELRKEADE----LHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAE 268 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333 33334444444444444444555555555666666666555555555444 22444
Q ss_pred HHHHHH
Q 013334 417 SKAEEI 422 (445)
Q Consensus 417 ~~y~~l 422 (445)
..|.++
T Consensus 269 ei~EKf 274 (294)
T COG1340 269 EIYEKF 274 (294)
T ss_pred HHHHHH
Confidence 445444
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.02 E-value=0.03 Score=58.96 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=14.8
Q ss_pred CCChhhhCCCChhHHHHHHHHHH-HHhcc
Q 013334 25 VITENDLKNPNPDFVSDLYTRLL-IFLDV 52 (445)
Q Consensus 25 ~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~ 52 (445)
.|.+..|++|..+|-+-.|..-. .+.|+
T Consensus 76 ~F~ayyLPk~~~e~YqfcYv~~~g~V~G~ 104 (546)
T PF07888_consen 76 QFQAYYLPKDDDEFYQFCYVDQKGEVRGA 104 (546)
T ss_pred EECcccCCCCCCCeEEEEEECCCccEEEe
Confidence 45666666666655554444444 44343
No 25
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.02 E-value=0.023 Score=57.73 Aligned_cols=234 Identities=14% Similarity=0.162 Sum_probs=118.1
Q ss_pred HHHHHHHHhhcCC--CCCChhhhCCCChhHHHHHHHHHHHHhc--ccC----cccchhcchHhhhcCCCc----------
Q 013334 11 ATEIVTILTETEI--AVITENDLKNPNPDFVSDLYTRLLIFLD--VLH----EDDQGQLDFAALEQLENP---------- 72 (445)
Q Consensus 11 ~~EIv~~L~~~~i--~~~t~~dl~~Pt~~~v~~ly~~~l~~~~--~~~----~e~~~~~~~~~~~~l~~p---------- 72 (445)
..+|+.+|.+-|| | ++...+..|+.--.+.||.|+-.+++ ++. ++.. +..+..+-||
T Consensus 110 ~~~I~~yL~engfd~p-is~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV----~~~lKnL~YPfl~sI~kSql 184 (622)
T COG5185 110 QEEIYDYLKENGFDIP-ISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEV----YQILKNLRYPFLESINKSQL 184 (622)
T ss_pred HHHHHHHHHHcCCCcc-hhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHH----HHHHHhcCCchhhhhhHhHh
Confidence 4689999988766 5 88899999999999999999876663 211 1111 1122223333
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHH--HHHHHHH-HHHhhHhhhhhhhHHHHHHHHh
Q 013334 73 -----DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE--YFLSAIL-NFCLYKDTKMNLLRPIAEDLTR 144 (445)
Q Consensus 73 -----e~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~--~iLSalI-NF~rFre~~~~~~~~~~~e~~~ 144 (445)
.....-++.+-+...+..-+..|--+ -.|+-- .....|.+ -++-++. -|.+|-+.- +.+.+...++..
T Consensus 185 sAI~ph~Wp~iLgMlhW~V~li~~~~~~~~~-~~tl~q--q~~~e~~Vek~lfdY~~~~Y~~fl~~~-~~~~~~e~Elk~ 260 (622)
T COG5185 185 SAIGPHNWPKILGMLHWMVRLIIKLDMCLQP-LKTLDQ--QDRYELMVEKLLFDYFTESYKSFLKLE-DNYEPSEQELKL 260 (622)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHhh-hchHhh--ccHHHHHHHHHHHHHHHHHHHHHhcCC-CccCchHHHHHH
Confidence 22333344444444443333444333 222211 00111211 1223333 234443221 112222222221
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH----HHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334 145 LDE-QRSELEDKISQLNAEIAAYNEV----RERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 219 (445)
Q Consensus 145 l~~-~~~~l~~~i~~l~~~~~~~~~~----~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l 219 (445)
.-+ ....+-..|+.++.++..+-.+ .+.. ..++.++.+...|+.....+..--..+......+-..+..|...|
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s-~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~ei 339 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS-QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEI 339 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 111 1112222333333333333221 1111 245677778888888777776665566666666666666777777
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhc---CHHHHHHHHHHH
Q 013334 220 SQTEFDLVQSVQQNADLRSKIVQ---SPEKLQRTLEEK 254 (445)
Q Consensus 220 ~~~~~~l~~l~qe~~~L~~~Iv~---SPe~lk~~l~e~ 254 (445)
+..+.++..++..++.|+.+|-. ||+.++....+.
T Consensus 340 e~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er 377 (622)
T COG5185 340 ELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQER 377 (622)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 77777777777777777766543 676666544443
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=98.02 E-value=0.052 Score=61.70 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=6.9
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 013334 216 DEKFSQTEFDLVQSVQQNA 234 (445)
Q Consensus 216 ~~~l~~~~~~l~~l~qe~~ 234 (445)
..++..+...+.++...+.
T Consensus 404 ~~~i~~l~~~~~~~~~~i~ 422 (880)
T PRK03918 404 EEEISKITARIGELKKEIK 422 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.95 E-value=0.061 Score=60.24 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=35.5
Q ss_pred ccCC----CcchHHHHHHHHH---HHHhhHhh-hhh----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 106 LIRP----DATRTEYFLSAIL---NFCLYKDT-KMN----LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 170 (445)
Q Consensus 106 L~~P----~~~R~~~iLSalI---NF~rFre~-~~~----~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~ 170 (445)
+-+| +.++-|.||+..= +|-.|-.. .+. .|..+.+..+...+.......++.-+.+++.+.+.+.
T Consensus 175 veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~ 251 (1074)
T KOG0250|consen 175 VENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKL 251 (1074)
T ss_pred CCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5577 6777778887653 56666332 333 3333444444444444455555666666666554433
No 28
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.92 E-value=0.1 Score=61.82 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=35.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 231 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~q 231 (445)
.+..+..++..|+++=.-+...+..|..+++.+-.+...+...+.++.+....+..
T Consensus 739 k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~ 794 (1822)
T KOG4674|consen 739 KLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEE 794 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666667777777777766666666555555444433
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.91 E-value=0.04 Score=59.22 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=12.3
Q ss_pred CcchHHHHHHHHHHHHhhHh
Q 013334 110 DATRTEYFLSAILNFCLYKD 129 (445)
Q Consensus 110 ~~~R~~~iLSalINF~rFre 129 (445)
++.| +.+|.-|.|.-.|..
T Consensus 149 ~~er-~~il~~l~~~~~~~~ 167 (562)
T PHA02562 149 APAR-RKLVEDLLDISVLSE 167 (562)
T ss_pred hHhH-HHHHHHHhCCHHHHH
Confidence 3444 677777888666644
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.88 E-value=0.035 Score=55.15 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=38.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 176 LVQEVDAKVKELRQTIQDLNKH-QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~-q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
.|..|+.+|..|..+|..+... ..........|..+...+...|..+..+...+.-++.++...+.
T Consensus 19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~ 85 (312)
T PF00038_consen 19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE 85 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence 5778888999999999888776 33344455556666666666666665555555555555554443
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.85 E-value=0.028 Score=53.68 Aligned_cols=113 Identities=15% Similarity=0.242 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 013334 303 VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE---KERNLKSEDATRAFENVKLEMESKRQD 379 (445)
Q Consensus 303 ~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~---~e~~~~~eel~~~~~~lkee~e~~~~~ 379 (445)
...+.++.+.+..+...|.....+...+..++.+++..+..+...++.+. .....+.+....++..|...+......
T Consensus 112 e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~R 191 (237)
T PF00261_consen 112 ERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENR 191 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666666666777777788877777777776533 334456777777888888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHH
Q 013334 380 LEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQEL 415 (445)
Q Consensus 380 ~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i 415 (445)
.+.....+..++..++.++..+...+..+..=-..+
T Consensus 192 ae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 192 AEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666555554433333
No 32
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.81 E-value=0.078 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334 225 DLVQSVQQNADLRSKIVQSPEKLQR 249 (445)
Q Consensus 225 ~l~~l~qe~~~L~~~Iv~SPe~lk~ 249 (445)
.+..+..+...|+..+-.-|.=+..
T Consensus 199 ~l~~l~~~~~~l~~~~~~iP~l~~~ 223 (569)
T PRK04778 199 ILDQLEEELAALEQIMEEIPELLKE 223 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444444444433
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.071 Score=59.93 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013334 311 KDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---KSEDATRAFENVKLEMESKRQDLEARQKKV 387 (445)
Q Consensus 311 ~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~~eel~~~~~~lkee~e~~~~~~e~~~~~~ 387 (445)
.++..+...+...+..+..++.++.++...++.+++..+.+...... +..+++..+.+..+ .+.......
T Consensus 921 ~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~-------~~~E~k~~~ 993 (1293)
T KOG0996|consen 921 ADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEE-------SLKEIKKEL 993 (1293)
T ss_pred HHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 33433344444444444556666666666666666654444333322 33333333333222 222223333
Q ss_pred HHHHHHHHHHHhhHHHHHH---hcHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 013334 388 EAVVTEVDAITSKTKFVKE---SGAAKLQELASKAEEIVEKFQQYTNSIGT 435 (445)
Q Consensus 388 e~~~~~v~~le~~~~~~~~---~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~ 435 (445)
..+...+..+...+++++. .++..+.++..++..+.+.+..|-..+..
T Consensus 994 ~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~ 1044 (1293)
T KOG0996|consen 994 RDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKK 1044 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCc
Confidence 3444455555555555554 47788888888888888888888765543
No 34
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.1 Score=57.88 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHcCC
Q 013334 82 MKLYSMVKEVVTTVNC 97 (445)
Q Consensus 82 l~~~~~~~~~l~~~gv 97 (445)
+.-+..+..||..+|+
T Consensus 121 ~a~~~~vq~lF~SVqL 136 (1174)
T KOG0933|consen 121 LAQNSKVQDLFCSVQL 136 (1174)
T ss_pred eCchhHHHHHHHHhcc
Confidence 4566778888888775
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.77 E-value=0.036 Score=52.97 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 249 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~ 249 (445)
......++++..|++.-..+..+++...........++..+.............|..+...+-+++..
T Consensus 29 ~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~ 96 (237)
T PF00261_consen 29 KRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEE 96 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555555555555556666666677777777777777777777777777777766666655543
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.70 E-value=0.21 Score=58.84 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 253 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e 253 (445)
.++..+................+......++.........+..+...+..+.+.+..|...+-+.|..|...|..
T Consensus 473 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~ 547 (1201)
T PF12128_consen 473 QADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRK 547 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHh
Confidence 344455555555556666666677777777777888888888888889999999999999999999999888843
No 37
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.67 E-value=0.13 Score=55.63 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=9.7
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 013334 408 GAAKLQELASKAEEIVEK 425 (445)
Q Consensus 408 ~e~ei~~i~~~y~~l~~~ 425 (445)
..+|++.+......|..|
T Consensus 415 ~kneL~~a~ekld~mgth 432 (1265)
T KOG0976|consen 415 AKNELQEALEKLDLMGTH 432 (1265)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 345555555555555555
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.55 E-value=0.13 Score=55.44 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=29.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSL----RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l----~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
.++.+..+...+..++..++.....+ ......++.+...+......+..++..++.++..+..
T Consensus 182 ~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 182 QIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555554443332322 2334444444444445555555555555555544443
No 39
>PRK01156 chromosome segregation protein; Provisional
Probab=97.53 E-value=0.28 Score=55.96 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334 401 TKFVKESGAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 401 ~~~~~~~~e~ei~~i~~~y~~l~~~~~ 427 (445)
..++...+..++..+..+...|...+.
T Consensus 467 ~~e~i~~~~~~i~~l~~~i~~l~~~~~ 493 (895)
T PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEVK 493 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665554
No 40
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.17 Score=51.71 Aligned_cols=243 Identities=14% Similarity=0.156 Sum_probs=109.1
Q ss_pred CCCCCCCCHHHHHHHHhhcCCC---CCChhhhCCCChh---HHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHH
Q 013334 3 KFDYPRLSATEIVTILTETEIA---VITENDLKNPNPD---FVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHV 76 (445)
Q Consensus 3 ~~~FP~l~~~EIv~~L~~~~i~---~~t~~dl~~Pt~~---~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~ 76 (445)
.|.|-.==-.|+++||..+..| .++.+.|..-+|. .+-+.+-|.+...-.+ +.+-++.. .++..+.++
T Consensus 153 ~f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~--~~~~~~~~----tl~qq~~~e 226 (622)
T COG5185 153 GFGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKL--DMCLQPLK----TLDQQDRYE 226 (622)
T ss_pred CCCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHH--HHHHhhhc----hHhhccHHH
Confidence 3455555568999999998664 5788888665664 3444455555111111 12222222 122223444
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHH----HHHHHHHHHH-hhHhhhhhhhHHHHHHHHhHHHHHHH
Q 013334 77 RSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE----YFLSAILNFC-LYKDTKMNLLRPIAEDLTRLDEQRSE 151 (445)
Q Consensus 77 ~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~----~iLSalINF~-rFre~~~~~~~~~~~e~~~l~~~~~~ 151 (445)
-++.-+-|-..|...+.-+... |=+.|--+-+. .+--+|.|=+ +.+++--. +.+.+.+...+.+.++.
T Consensus 227 ~~Vek~lfdY~~~~Y~~fl~~~------~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~-l~e~i~ea~k~s~~i~~ 299 (622)
T COG5185 227 LMVEKLLFDYFTESYKSFLKLE------DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDN-LYEKIQEAMKISQKIKT 299 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC------CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4444444444454444444332 11234322222 2222222211 11111111 11222233333333333
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHhccchh-------HhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 013334 152 LEDKISQLN-------AEIAAYNEVRERELPLV-------QEVDAKVKELRQTIQDLNKHQVS---LRTTLNKLKEKTGA 214 (445)
Q Consensus 152 l~~~i~~l~-------~~~~~~~~~~~~~~~~~-------~el~~e~~~L~~~L~~l~~~q~~---l~~~~~~lk~e~~~ 214 (445)
+.++...|. .....++.+-+.-...+ ...+.+.+.|++..-+|..+-.. -..+++....++.+
T Consensus 300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~ 379 (622)
T COG5185 300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREK 379 (622)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 444433333 33333333322222223 33334444444444444333221 12556666777777
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 215 LDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 215 l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
|...++...-+...+...+..-.-.+..+.+.|-..+-+..+.+
T Consensus 380 L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 380 LTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666665555555555555555554444443
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.45 E-value=0.48 Score=56.48 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhh
Q 013334 75 HVRSVQIMKLYSMVKEVVTT-VNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKM 132 (445)
Q Consensus 75 ~~~s~~~l~~~~~~~~~l~~-~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~ 132 (445)
|.-++.-+...+..+.||+- ||.+-.+...|..++...|-..|=.| +.||..+.
T Consensus 242 ~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~ 296 (1486)
T PRK04863 242 NRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELY 296 (1486)
T ss_pred HHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHH
Confidence 44455556666667777766 67654566667777777776665555 56664443
No 42
>PRK11637 AmiB activator; Provisional
Probab=97.41 E-value=0.22 Score=51.86 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013334 145 LDEQRSELEDKISQLNAEIA 164 (445)
Q Consensus 145 l~~~~~~l~~~i~~l~~~~~ 164 (445)
+..+.++++.++.+++.++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.24 E-value=0.37 Score=50.94 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------ccchhHhHHHHHHHHHHH
Q 013334 133 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER----------------------ELPLVQEVDAKVKELRQT 190 (445)
Q Consensus 133 ~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~----------------------~~~~~~el~~e~~~L~~~ 190 (445)
..+..+-+.+....++...|+++...|...+..++..--. ......+++.++..|+.+
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455566777777777777777777777777776542211 111233444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
+.+|.+.-...........++.......+.+++.++..+...+..|.
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 55555544444444444444444444444555544444444444443
No 44
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.24 E-value=0.43 Score=51.58 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCCC--ChhhhCCCChhHHHHHHHHHHHHhcc-cCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHH
Q 013334 13 EIVTILTETEIAVI--TENDLKNPNPDFVSDLYTRLLIFLDV-LHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVK 89 (445)
Q Consensus 13 EIv~~L~~~~i~~~--t~~dl~~Pt~~~v~~ly~~~l~~~~~-~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~ 89 (445)
=|+..|+.+|. .| ..+.|..=||+.+..+-.+||..++- .+.++.. ..|.. ...-+++...+-
T Consensus 7 ii~~~L~~~g~-~~~~~~~sl~~ft~e~~v~~~~~cL~~I~p~~~~~l~~----------~lP~~---msaRfr~~~~lA 72 (594)
T PF05667_consen 7 IIIHSLRQIGC-DIPEDVQSLKQFTTELLVEAVVRCLRVIDPSLGSSLPR----------SLPPG---MSARFRVGTSLA 72 (594)
T ss_pred HHHHHHHHcCC-cccCCcccHhhCCHHHHHHHHHHHHHHhCccccCCCcc----------cCChH---HHHHHHHHHHHH
Confidence 46778999987 35 33345677899999999999944432 1111111 11211 111123333344
Q ss_pred HHHHHcCCCCCCCcccccCCCcchHHHHHHHHH
Q 013334 90 EVVTTVNCPMNFTLKDLIRPDATRTEYFLSAIL 122 (445)
Q Consensus 90 ~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalI 122 (445)
..++.+|++.|.++..++.|...=+|++|..||
T Consensus 73 ~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLi 105 (594)
T PF05667_consen 73 QACKELGYRGDIGYQTFLYPNEKDLRRLLMFLI 105 (594)
T ss_pred HHHHHcCCCCCCcchhhccCChHHHHHHHHHHH
Confidence 556666875577788888887777777777776
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.59 Score=52.92 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhhcCHHHHHHHHHHHHHHHHHHH
Q 013334 199 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR---SKIVQSPEKLQRTLEEKKSIREEAR 262 (445)
Q Consensus 199 ~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~---~~Iv~SPe~lk~~l~e~k~~~~~l~ 262 (445)
.++..++..+..+-..+...+..+...+..++.++++.+ +.+-..|++....+.++...+..|.
T Consensus 387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~ 453 (1293)
T KOG0996|consen 387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLE 453 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHH
Confidence 334444444444444444444444444455555544444 3355677777777777766654443
No 46
>PRK11637 AmiB activator; Provisional
Probab=97.22 E-value=0.36 Score=50.25 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=8.1
Q ss_pred cccccCCCcchHHHHHHH
Q 013334 103 LKDLIRPDATRTEYFLSA 120 (445)
Q Consensus 103 ~~DL~~P~~~R~~~iLSa 120 (445)
|.--.+|..--++-++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (428)
T PRK11637 9 MTRAVKPRRFAIRPILYA 26 (428)
T ss_pred ccccccchhhhhhhHHHH
Confidence 344445544444444443
No 47
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.18 E-value=0.26 Score=47.80 Aligned_cols=265 Identities=19% Similarity=0.281 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccc---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 152 LEDKISQLNAEIAAYNEVRER-ELP---LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 152 l~~~i~~l~~~~~~~~~~~~~-~~~---~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
++++|+-|+.+|..++..-.. +.. .+.-+...|.+|...|+ || -++|...+..|..+.+.|..+-.-+.+.+.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lK-Ln--eE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLK-LN--EETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-hh--HHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 455566666666555442111 111 12223334444443332 22 235566666666666666666666666666
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHH-------
Q 013334 228 QSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQ-------SFQEKTTTLEVYQKTLKKMSKQS------- 293 (445)
Q Consensus 228 ~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q-------~~q~k~~~~e~~~k~~~~l~~~~------- 293 (445)
.-++-.++|++.|-.--.+|-+++-+-.....--++.+ .|+| .+|.+.+ -++|...
T Consensus 81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdle-lafqr~rdEw~~lqdkmn---------~d~S~lkd~ne~Ls 150 (305)
T PF14915_consen 81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLE-LAFQRARDEWVRLQDKMN---------SDVSNLKDNNEILS 150 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH-HHHHHHhhHHHHHHHHhc---------chHHhHHHHhHHHH
Confidence 66666666666666666666666655433221111111 1222 2233221 1122111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHH
Q 013334 294 AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE---KERNLKSEDATRAFENVK 370 (445)
Q Consensus 294 ~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~---~e~~~~~eel~~~~~~lk 370 (445)
.++...+...++++. ++-.+.+-|.+.......++.-+.+.+.++.+++..+.... ..-..+-+-++..+..+.
T Consensus 151 QqLskaesK~nsLe~---elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Qlq 227 (305)
T PF14915_consen 151 QQLSKAESKFNSLEI---ELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQ 227 (305)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444444333322 22233444444455556677778888888888877765422 233335566677777777
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHh----cHH-------HHHHHHHHHHHHHHHHHHhHhh
Q 013334 371 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES----GAA-------KLQELASKAEEIVEKFQQYTNS 432 (445)
Q Consensus 371 ee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~----~e~-------ei~~i~~~y~~l~~~~~~Y~~~ 432 (445)
++--..++.++......+..+..|-+|.+...+.-.. .++ .-+++..+|..|...+-.|=.+
T Consensus 228 sEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 228 SENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888777776766677777776665444333 222 2345778888888888888543
No 48
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.05 E-value=0.77 Score=51.01 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCCcchHHHHHHHHHHHHhhHhhhhhhh-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 013334 108 RPDATRTEYFLSAILNFCLYKDTKMNLL-----------RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL 176 (445)
Q Consensus 108 ~P~~~R~~~iLSalINF~rFre~~~~~~-----------~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 176 (445)
.-+..|+-+-|++.=+-..|--.+++-+ ..+..++.++..+...++..|+.++-.+..... .
T Consensus 265 ~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~-------~ 337 (775)
T PF10174_consen 265 EADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ-------E 337 (775)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3446677677888777777755554321 122223333333333333334433333322222 2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
..-|..++..|..+|-.-+.........+..+..+++.+..+|+++...+.....++..|.
T Consensus 338 ~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 338 AEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666665555544444444444444444444444444444433333333333
No 49
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.97 E-value=0.87 Score=50.24 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHHHHHHHhhHHHHHHhcHHH
Q 013334 339 GKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK-------VEAVVTEVDAITSKTKFVKESGAAK 411 (445)
Q Consensus 339 ~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~-------~e~~~~~v~~le~~~~~~~~~~e~e 411 (445)
..++.+++..+++.+-+...--+++.+++.++..+.+..+..++-+.- |......+..+.+++.+.+..-..-
T Consensus 472 ~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 472 GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555555666666666666777777777766665555555543332 2233445555666655555432221
Q ss_pred HH---------HHHHHHHHHHHHHHHhHhhhhhhcccccc
Q 013334 412 LQ---------ELASKAEEIVEKFQQYTNSIGTLLPVTEI 442 (445)
Q Consensus 412 i~---------~i~~~y~~l~~~~~~Y~~~~~~~~~~~~~ 442 (445)
.. .-.-.|..+.+.-+.|-.-+..-|-.+++
T Consensus 552 eees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiEv 591 (1243)
T KOG0971|consen 552 EEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIEV 591 (1243)
T ss_pred HHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 11 22345666666667776666655555443
No 50
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.94 E-value=0.96 Score=50.29 Aligned_cols=211 Identities=19% Similarity=0.237 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh----------hhhcCHHHHHHHH
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS----------KIVQSPEKLQRTL 251 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~----------~Iv~SPe~lk~~l 251 (445)
..+..-+......+.....+..++..-+.+...+..++..+.......++.++.|+. .+....|+|...+
T Consensus 273 k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 273 KQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333444444444444444555555555555556666666666666655666666542 2444555666666
Q ss_pred HHHHHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HH
Q 013334 252 EEKKSIREEARDAEKLA---MQSFQEK-TTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDD--VV 325 (445)
Q Consensus 252 ~e~k~~~~~l~~~e~~~---~q~~q~k-~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~--~~ 325 (445)
++....+++....--.+ +.+++.- ...-+.+.+...+++.....++.+.+. +++-.+.+...+.+|..+ ..
T Consensus 353 e~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~---l~ekd~ql~~~k~Rl~~~~d~~ 429 (775)
T PF10174_consen 353 EEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQ---LREKDRQLDEEKERLSSQADSS 429 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccccc
Confidence 66555553322111000 1111111 112223333334444433344444433 234455555555555510 00
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013334 326 LDKSLEAKLIERQGKV----EQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVD 395 (445)
Q Consensus 326 ~~~~L~~kl~e~q~k~----e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~ 395 (445)
....+..++.++.... ..+++.......++...++..+.++..++..+.....++..+.........++.
T Consensus 430 ~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s 503 (775)
T PF10174_consen 430 NEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEAS 503 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 1112233333333333 333333333344555555666666666666666666666555544444433333
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.87 E-value=1 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 327 DKSLEAKLIERQGKVEQLDELQQQL 351 (445)
Q Consensus 327 ~~~L~~kl~e~q~k~e~l~e~~~~~ 351 (445)
...|..-|...|.|-.+|+..+.+.
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsaE 613 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSAE 613 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4456666667777778887777653
No 52
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.87 E-value=0.6 Score=46.80 Aligned_cols=12 Identities=0% Similarity=0.136 Sum_probs=9.6
Q ss_pred HHHHHHHHcCCC
Q 013334 87 MVKEVVTTVNCP 98 (445)
Q Consensus 87 ~~~~~l~~~gv~ 98 (445)
++..||..+||.
T Consensus 15 sL~~FL~~~~I~ 26 (325)
T PF08317_consen 15 SLQDFLNMTGIR 26 (325)
T ss_pred CHHHHHHHhCce
Confidence 477899999984
No 53
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=1.1 Score=49.79 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=6.9
Q ss_pred HHHHHHHcCCC
Q 013334 88 VKEVVTTVNCP 98 (445)
Q Consensus 88 ~~~~l~~~gv~ 98 (445)
+-.+|...|+.
T Consensus 121 vvnLLESAGFS 131 (1200)
T KOG0964|consen 121 VVNLLESAGFS 131 (1200)
T ss_pred HHHHHHhcCcc
Confidence 34667777764
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.81 E-value=0.74 Score=47.14 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013334 148 QRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 148 ~~~~l~~~i~~l~~~~~~~ 166 (445)
++++.+.+|+++.+.+...
T Consensus 39 ~l~q~q~ei~~~~~~i~~~ 57 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQ 57 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666555544
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.80 E-value=1.4 Score=49.92 Aligned_cols=25 Identities=20% Similarity=-0.043 Sum_probs=14.6
Q ss_pred hhCCCChhHHHHHHHHHHHHhcccC
Q 013334 30 DLKNPNPDFVSDLYTRLLIFLDVLH 54 (445)
Q Consensus 30 dl~~Pt~~~v~~ly~~~l~~~~~~~ 54 (445)
-|.=|+..==..|++.+...||.+.
T Consensus 66 fI~G~NGSGKSAIltAl~lglG~rA 90 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTALTLGLGGRA 90 (1074)
T ss_pred EeecCCCCcHHHHHHHHHHhhcccc
Confidence 4445555445567776666776543
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.79 E-value=1.8 Score=51.12 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013334 328 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM 373 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~ 373 (445)
..++.++..+..++..++..+..+...-.....++...+..+...+
T Consensus 819 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 864 (1201)
T PF12128_consen 819 PELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQL 864 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666555555555555555544444433
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.78 E-value=1.1 Score=48.56 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=12.7
Q ss_pred cchhHhHHHHHHHHHHHHHHHHH
Q 013334 174 LPLVQEVDAKVKELRQTIQDLNK 196 (445)
Q Consensus 174 ~~~~~el~~e~~~L~~~L~~l~~ 196 (445)
.|....++.....++........
T Consensus 164 G~a~~~le~~l~~~e~~f~~f~~ 186 (569)
T PRK04778 164 GPALDELEKQLENLEEEFSQFVE 186 (569)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655554443
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=1.3 Score=49.52 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=7.0
Q ss_pred CCCcc-cccCCCc
Q 013334 100 NFTLK-DLIRPDA 111 (445)
Q Consensus 100 DFt~~-DL~~P~~ 111 (445)
..|+. |+|.|.+
T Consensus 647 sVTl~GDV~dP~G 659 (1174)
T KOG0933|consen 647 SVTLEGDVYDPSG 659 (1174)
T ss_pred eeeecCceeCCCC
Confidence 34443 8888853
No 59
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.75 E-value=1.1 Score=48.04 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL----DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK 255 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l----~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k 255 (445)
....+..|..+|..++...............+...+ ......+...+.....++..|+..+ .+-..|+..+..-+
T Consensus 170 ~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~ 248 (522)
T PF05701_consen 170 NEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEAS 248 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344556666666666655554333222222222222 2344455555555666666666655 44444444444333
Q ss_pred H
Q 013334 256 S 256 (445)
Q Consensus 256 ~ 256 (445)
.
T Consensus 249 ~ 249 (522)
T PF05701_consen 249 A 249 (522)
T ss_pred H
Confidence 3
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.63 E-value=1.2 Score=47.17 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=18.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 013334 218 KFSQTEFDLVQSVQQNADLRSKIVQSP 244 (445)
Q Consensus 218 ~l~~~~~~l~~l~qe~~~L~~~Iv~SP 244 (445)
-++++.|....-++++..+..+....|
T Consensus 209 Lleel~f~~~~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 209 LLEELAFLKRIHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence 344566666666677777777777666
No 61
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.56 E-value=0.00058 Score=75.58 Aligned_cols=50 Identities=8% Similarity=0.154 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 013334 379 DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ 428 (445)
Q Consensus 379 ~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~ 428 (445)
++.............+..++......+...+.|.+-|...|..+.-.++.
T Consensus 623 e~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~~ 672 (713)
T PF05622_consen 623 EIQALKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLHR 672 (713)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556667778888888888888888888888888887766654
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.45 E-value=0.86 Score=43.33 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334 226 LVQSVQQNADLRSKIVQSPEKLQRTLEEK 254 (445)
Q Consensus 226 l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~ 254 (445)
|..+..+..+|.+++-.-|+.|+....++
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~ 40 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAEL 40 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34556666667777666666666554444
No 63
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.40 E-value=1.1 Score=43.82 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 013334 158 QLNAEIAAYNEV 169 (445)
Q Consensus 158 ~l~~~~~~~~~~ 169 (445)
.+...+.++..+
T Consensus 17 ~lk~~~~e~~ek 28 (294)
T COG1340 17 QLKEEIEELKEK 28 (294)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 64
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.39 Score=50.84 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=37.4
Q ss_pred CCCCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH
Q 013334 3 KFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL 47 (445)
Q Consensus 3 ~~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l 47 (445)
-+|+--++++||+.++.++|-|-+-..|. +|-|++|.+|=..|=
T Consensus 269 ~~S~r~~~~~eVve~I~~lG~PvvVAtDV-tp~P~~V~KiAasf~ 312 (652)
T COG2433 269 LESRRGIDRSEVVEFISELGKPVVVATDV-TPAPETVKKIAASFN 312 (652)
T ss_pred eeccccCCHHHHHHHHHHcCCceEEEccC-CCChHHHHHHHHHcC
Confidence 36788899999999999999986666664 688999999988887
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.14 E-value=3.4 Score=47.04 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Q 013334 112 TRTEYFLSAILNFCLYKDTKMNLLRPIAED 141 (445)
Q Consensus 112 ~R~~~iLSalINF~rFre~~~~~~~~~~~e 141 (445)
.+++.++-.|=||+-=...-.+.++.+.++
T Consensus 1471 ~el~~Li~~v~~Flt~~~adp~si~~vA~~ 1500 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDADPDSIEEVAEE 1500 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 344455555555554443333444444433
No 66
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.14 E-value=1.9 Score=44.23 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=41.9
Q ss_pred HHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334 367 ENVKLEMESKR-QDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 426 (445)
Q Consensus 367 ~~lkee~e~~~-~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~ 426 (445)
..++.+++... ..++-..++.+..+.+.-.+...-+......-.|-+.+...|.+|+.++
T Consensus 466 Q~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 466 QQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 33444444332 4455555566666777777777777888888899999999999999876
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.13 E-value=2.9 Score=46.19 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=30.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 174 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 174 ~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
...+.+++.+|+.|+.++..|.+....=+..+..+..+..+....-..++.++.
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888777765544444444444444444333334444443
No 68
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.07 E-value=3.8 Score=46.98 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSL-RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l-~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
+|+.....++.+..+|++.|.++ ...+..+.....+...++..+...+..+..+.+.++
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555433322 233333344444444444444444444444444443
No 69
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.03 E-value=3.2 Score=45.72 Aligned_cols=68 Identities=12% Similarity=0.239 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 013334 156 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF 224 (445)
Q Consensus 156 i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~ 224 (445)
++.|...+..+........ ....+..+..+++.++..+......+..+...++.+...+..++..+..
T Consensus 184 ~~~L~~dl~~~~~~~~~~~-~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSE-LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433332222 2334445556666666655555555555555555555555554444433
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.00 E-value=3.9 Score=46.55 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334 204 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 234 (445)
Q Consensus 204 ~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~ 234 (445)
.+..+-.++++....|.+.+.-+...+..+.
T Consensus 1512 qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhhhhhHH
Confidence 3444444455555555555555554444433
No 71
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.91 E-value=3.2 Score=44.80 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHH
Q 013334 222 TEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 263 (445)
Q Consensus 222 ~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~ 263 (445)
+...+..++.+...|+..+-.=|.=+...-...-.++++++.
T Consensus 192 A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~ 233 (560)
T PF06160_consen 192 AREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE 233 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence 344455556666666666666665555544444444444443
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=3.6 Score=44.92 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
+..+|.....|..+++.+..++..|..+|-+....+.+.+.+++.+.
T Consensus 432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~ 478 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVT 478 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhh
Confidence 33344444444444444444444444444444444444444444333
No 73
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.77 E-value=2.1 Score=41.54 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHH
Q 013334 201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS-KIVQSPEKLQRTLEEKKSIREEARD 263 (445)
Q Consensus 201 l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~-~Iv~SPe~lk~~l~e~k~~~~~l~~ 263 (445)
+....+........+...+..+...+..+..++..+.. .-..+|..|.+.+.+-...+.+++.
T Consensus 78 l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 78 LNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555554 4466888899888888888777654
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.68 E-value=2.7 Score=42.15 Aligned_cols=44 Identities=7% Similarity=0.151 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334 384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~ 427 (445)
..+...+.+++..++......+.--..|+..+...|..|.+..+
T Consensus 250 ~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 250 EEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHC
Confidence 33333344444444444444444456788888888888887654
No 75
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.62 E-value=4.5 Score=44.34 Aligned_cols=259 Identities=18% Similarity=0.208 Sum_probs=132.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK 255 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k 255 (445)
.+..++...+.++.+|..|+..+..+..+...+..-++.+.+++.+.+-++.++..+..+|...+.---+.+.+.-++++
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 45566677777777777777777777777777777777777777777777777777777766665555555555554444
Q ss_pred HHHHHHHHHH-------------HHH----HHhH-----------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 013334 256 SIREEARDAE-------------KLA----MQSF-----------QEKTTTLEVYQKTLKKM---SKQSAQMQAILEQVN 304 (445)
Q Consensus 256 ~~~~~l~~~e-------------~~~----~q~~-----------q~k~~~~e~~~k~~~~l---~~~~~~l~~~~e~~~ 304 (445)
..-.++-... ..+ .+.| +.....-+.-.++++.+ +.+..-|..+..-..
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s 252 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS 252 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Confidence 3221111110 000 0011 00000000011111111 111111222222222
Q ss_pred HHHHHHHHHHHHH----HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h-----------HHHHHHHH
Q 013334 305 SAKSIEKDYKSLK----ARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL---K-----------SEDATRAF 366 (445)
Q Consensus 305 ~~k~~e~~~k~lk----~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~-----------~eel~~~~ 366 (445)
.+++..-.+.++. .+..+|....+.|...+.+....+..+.+.+..+...+.. . ...+++++
T Consensus 253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqk 332 (1265)
T KOG0976|consen 253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQK 332 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 1222333333445555555555555555555544433332 2 23344555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---hhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 013334 367 ENVKLEMESKRQDLEARQKKVEAVVTEVDAIT---SKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 434 (445)
Q Consensus 367 ~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le---~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~ 434 (445)
.+++-++-+.++..+-.......++++-+... +.+.+.+++.+.+.+.+...-..+..+|+.--+-|.
T Consensus 333 adirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 333 ADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666666666666665555555555555443 456777888888899888888888888766555443
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.58 E-value=3.3 Score=42.52 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=51.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 013334 178 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 247 (445)
Q Consensus 178 ~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~l 247 (445)
.+.+.+...+..+|....+....|...+..++.+...+...|......+..+.+.|+.+...+...+..-
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777778888888888877777777777777777777777776666554
No 77
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.48 E-value=6.4 Score=45.16 Aligned_cols=26 Identities=8% Similarity=0.322 Sum_probs=15.8
Q ss_pred CcccccCCCcchHHHHHHHHHHHHhh
Q 013334 102 TLKDLIRPDATRTEYFLSAILNFCLY 127 (445)
Q Consensus 102 t~~DL~~P~~~R~~~iLSalINF~rF 127 (445)
.|.++++-+|+--..+|+.+.|.-.|
T Consensus 144 e~~~fl~~~~~er~~il~~l~~l~~~ 169 (908)
T COG0419 144 EFDAFLKSKPKERKEILDELFGLEKY 169 (908)
T ss_pred hHHHHHhcCcHHHHHHHHHHhCchhH
Confidence 34555555666556667777666664
No 78
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.48 E-value=1.6 Score=38.13 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013334 150 SELEDKISQLNAEIAAY 166 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~ 166 (445)
..++++|..|.++++..
T Consensus 20 dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 20 DSLEDHVESLERELEMS 36 (140)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44555555555554444
No 79
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.40 E-value=1.7 Score=37.96 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 013334 149 RSELEDKIS 157 (445)
Q Consensus 149 ~~~l~~~i~ 157 (445)
...++.++.
T Consensus 26 v~~LEreLe 34 (140)
T PF10473_consen 26 VESLERELE 34 (140)
T ss_pred HHHHHHHHH
Confidence 333333333
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.29 E-value=5.4 Score=43.24 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHhhcCC-CCCChhhhCCCChhHHHHHHHHHH
Q 013334 13 EIVTILTETEI-AVITENDLKNPNPDFVSDLYTRLL 47 (445)
Q Consensus 13 EIv~~L~~~~i-~~~t~~dl~~Pt~~~v~~ly~~~l 47 (445)
.|+..+.++|+ ..+.-..+.=|+..-++.||.+++
T Consensus 70 ~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLi 105 (594)
T PF05667_consen 70 SLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLI 105 (594)
T ss_pred HHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHH
Confidence 35555666666 356666677777777777777777
No 81
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.20 E-value=2.6 Score=38.99 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013334 150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 229 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l 229 (445)
.++..+++.+..++.-++.-.......+...+....+|-+-|...+..--.|+..+..++.....+..++.+.+.++..+
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433332222222333333334444444444444444455555555555555555555555555555
Q ss_pred HHHHHHHH
Q 013334 230 VQQNADLR 237 (445)
Q Consensus 230 ~qe~~~L~ 237 (445)
..++.+|+
T Consensus 102 ~~~l~~L~ 109 (194)
T PF15619_consen 102 KDELKHLK 109 (194)
T ss_pred HHHHHHHH
Confidence 55555544
No 82
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.17 E-value=5.8 Score=42.85 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhh
Q 013334 366 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 433 (445)
Q Consensus 366 ~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~ 433 (445)
+..|+..++.....++.... .+.+...+..-+..+..+-..-+++|+.+...+..+...=..|...+
T Consensus 407 leeL~~~L~e~qkll~ekk~-~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQV 473 (786)
T PF05483_consen 407 LEELKKILAEKQKLLDEKKQ-FEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQV 473 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444444444433333222 44444444444555555556666666666666655555555554433
No 83
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.12 E-value=5.4 Score=42.26 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=60.1
Q ss_pred ccCCCcchHHHHHHHHHH-HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHH
Q 013334 106 LIRPDATRTEYFLSAILN-FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKV 184 (445)
Q Consensus 106 L~~P~~~R~~~iLSalIN-F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~ 184 (445)
...|+|.....++.+++. |+.+.-... ......-...+..+...++.++...+.++.+++.+...-.|. ..
T Consensus 128 ~~~~dP~~Aa~i~n~l~~~yi~~~~~~~--~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~------~~ 199 (498)
T TIGR03007 128 YEDKDPELAKDVVQTLLTIFVEETLGSK--RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD------QE 199 (498)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc------ch
Confidence 457999999999999886 655532211 122223444556667778888888888877775433211111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334 185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 219 (445)
Q Consensus 185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l 219 (445)
..+..++..++........++...+.....+...+
T Consensus 200 ~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 200 GDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23344555555555555555555555555554443
No 84
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=3.5 Score=39.74 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 254 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~ 254 (445)
.+.+..+..++..++.+...++..+..+|..|+..|+.=-+.|+.....|
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444555555555555666655555555555444444
No 85
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.02 E-value=2.3 Score=37.47 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Q 013334 87 MVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLT 143 (445)
Q Consensus 87 ~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~ 143 (445)
+++.-+...|++.+....|-..+.+.....++..|---+.-|+.-+...+.+.+..-
T Consensus 6 yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~ 62 (151)
T PF11559_consen 6 YINQQLLSRGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLR 62 (151)
T ss_pred HHHHHHHHCCCCCCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677876343333333234455555555544444555554444444444443
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.96 E-value=0.073 Score=59.12 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHH-cCC--CCCCCccccc----CCCcchHHHHHHHH
Q 013334 77 RSVQIMKLYSMVKEVVTT-VNC--PMNFTLKDLI----RPDATRTEYFLSAI 121 (445)
Q Consensus 77 ~s~~~l~~~~~~~~~l~~-~gv--~~DFt~~DL~----~P~~~R~~~iLSal 121 (445)
..-++-.+++.+..|... +|- . +|++-|+. +|++.=+.++|--|
T Consensus 68 r~~NLk~l~~~i~~yy~e~L~~~i~-~~~~Pd~~~Iae~~d~~El~kLL~Ll 118 (713)
T PF05622_consen 68 RVSNLKKLLRNIKSYYQEELGQQIS-EMPLPDLQAIAENSDPEELKKLLQLL 118 (713)
T ss_dssp HHHHHHHHHHHHHHHHHTTT------TTT---HHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcC-cCCCCCHHHHHhCCCHHHHHHHHHHH
Confidence 445566788888888886 442 3 45554433 46666566665544
No 87
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.95 E-value=8 Score=43.34 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCCCCCccc-----ccCCCcchHHHHHHHHHHHH-hhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013334 87 MVKEVVTTVNCPMNFTLKD-----LIRPDATRTEYFLSAILNFC-LYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLN 160 (445)
Q Consensus 87 ~~~~~l~~~gv~~DFt~~D-----L~~P~~~R~~~iLSalINF~-rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~ 160 (445)
.+..|...+.|. ...-.. ...|+|.+...++.++++.. .+.-.. ..+....-...+..+...++.++....
T Consensus 138 ~~~~l~~~L~V~-~~~~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~--k~~~~~~a~~~L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 138 VLKKMREKLNVF-GVEKTRIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAA--KSESNTAAADFLAPEIADLSKQSRDAE 214 (754)
T ss_pred HHHHHHhcceEE-ecCccEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555553 333222 34789999999999999643 332111 123333445556667777777777777
Q ss_pred HHHHHHHHHH
Q 013334 161 AEIAAYNEVR 170 (445)
Q Consensus 161 ~~~~~~~~~~ 170 (445)
.+++.++.+.
T Consensus 215 ~~l~~fk~~~ 224 (754)
T TIGR01005 215 AEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHc
Confidence 7777776643
No 88
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.86 E-value=2.5 Score=37.08 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=41.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV---QSVQQNADLRSKIVQSPEKLQRTLE 252 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~---~l~qe~~~L~~~Iv~SPe~lk~~l~ 252 (445)
.+.+++.++..+..+|..|++.-..+..+++.+..........++....... .+...+.-|+..+-.|-.+|+...+
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666665555666666666666666665555444333 3444444444444444444444443
Q ss_pred HH
Q 013334 253 EK 254 (445)
Q Consensus 253 e~ 254 (445)
.+
T Consensus 102 kl 103 (143)
T PF12718_consen 102 KL 103 (143)
T ss_pred HH
Confidence 33
No 89
>PRK09039 hypothetical protein; Validated
Probab=94.86 E-value=4.2 Score=41.11 Aligned_cols=51 Identities=8% Similarity=0.162 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 013334 358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 408 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~ 408 (445)
+...+...+.+.+..+.+...++.....+++.+.+.+..++..++..+...
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444433
No 90
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=5.6 Score=40.88 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCCCCh-hhhCCCChhHHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHH
Q 013334 13 EIVTILTETEIAVITE-NDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEV 91 (445)
Q Consensus 13 EIv~~L~~~~i~~~t~-~dl~~Pt~~~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~ 91 (445)
=|...|...|. .|.+ +++.--||+.|..+..+||...+-+. .++. .. -.|..... -+++-..+..-
T Consensus 7 iimh~lrq~g~-sipp~~~lseFTteqvveavvrcL~~Idps~-------q~~~-s~-llp~am~~---Rfrla~siAq~ 73 (521)
T KOG1937|consen 7 IIMHALRQLGC-SIPPFEDLSEFTTEQVVEAVVRCLWKIDPSK-------QTIS-SY-LLPKAMTT---RFRLANSIAQY 73 (521)
T ss_pred HHHHHHHHcCC-CCCCchhHhhcCHHHHHHHHHHHHHhcCccc-------cccc-cc-cCchHHHH---HHHHHHHHHHH
Confidence 46778899897 5777 89999999999999999995554211 1100 00 12322221 23455556677
Q ss_pred HHHcCCCCCCCcccccCCCcchHHHHHHHHH
Q 013334 92 VTTVNCPMNFTLKDLIRPDATRTEYFLSAIL 122 (445)
Q Consensus 92 l~~~gv~~DFt~~DL~~P~~~R~~~iLSalI 122 (445)
+++.|++.|.++--.+.|...-+|.+|=.+|
T Consensus 74 ckdlgyrgD~gyqtfLypn~~dlR~ll~fLi 104 (521)
T KOG1937|consen 74 CKDLGYRGDTGYQTFLYPNINDLRSLLIFLI 104 (521)
T ss_pred HHHcCCCcccchhheecCCcccHHHHHHHHH
Confidence 7888998899999999998888888776666
No 91
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.77 E-value=7 Score=41.83 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
|..-+.++.....++...+.+...+..++.
T Consensus 118 le~~~~q~~~~~~eL~~~k~EL~~lr~e~~ 147 (522)
T PF05701_consen 118 LESAREQYASAVAELDSVKQELEKLRQELA 147 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444443333333
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.64 E-value=2.9 Score=36.71 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013334 327 DKSLEAKLIERQGKVEQLDELQQ 349 (445)
Q Consensus 327 ~~~L~~kl~e~q~k~e~l~e~~~ 349 (445)
...|..+...|..+++.+..+++
T Consensus 117 v~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 117 VKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555556666665555544
No 93
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.62 E-value=9.9 Score=42.88 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013334 334 LIERQGKVEQLDELQ 348 (445)
Q Consensus 334 l~e~q~k~e~l~e~~ 348 (445)
..++..+++.+...+
T Consensus 483 t~el~~~iknlnk~L 497 (1195)
T KOG4643|consen 483 TEELLNQIKNLNKSL 497 (1195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 94
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=8.7 Score=42.13 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
+++.+..+.-+++.+.+.+..+...+-+.+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 344444444444444444444444444444
No 95
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.38 E-value=11 Score=42.20 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHhhhhHHH-HHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 013334 371 LEMESKRQDLEA-RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT 435 (445)
Q Consensus 371 ee~e~~~~~~e~-~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~ 435 (445)
+++.+..++++. .+.+++.+.+-++.+.+.++...+.. ...+..-.+|-.|+.|.+.-+.....
T Consensus 482 EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~-yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 482 EQLQESNRELELDLREELDMAKGARKELQKRVEAAQETV-YDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444443 44445555555665655555544432 33445556788888888777766654
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.20 E-value=6.6 Score=39.10 Aligned_cols=12 Identities=0% Similarity=0.136 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCC
Q 013334 87 MVKEVVTTVNCP 98 (445)
Q Consensus 87 ~~~~~l~~~gv~ 98 (445)
++..||.++||.
T Consensus 11 sL~dFL~~t~I~ 22 (312)
T smart00787 11 SLQDFLNMTGIR 22 (312)
T ss_pred cHHHHHHHcCce
Confidence 578899999985
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=5.7 Score=38.32 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 202 ~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
..+++.+..+..++..++.+...++.++.+++..|+.+|
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 98
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=11 Score=41.49 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
....++..+.++--+-+.+.+...+++-+..++..++.........+..+.+.|+.+
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444334444445555555555555555555555555555555555544
No 99
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.09 E-value=17 Score=43.55 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 013334 328 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQ 378 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~ 378 (445)
..++.++..+..++..+++.+.....+-..+++++...+..+..++....+
T Consensus 899 ~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~ 949 (1353)
T TIGR02680 899 AEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAE 949 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444444444444444444444444444433
No 100
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.06 E-value=13 Score=42.00 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=15.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
+..-.+..+...+++++..|+.++.+.
T Consensus 198 enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 198 ENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445556666677777666665
No 101
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.00 E-value=4.8 Score=36.81 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 181 ~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
..++.+|+.-+..+......|......+..+...+..++..+..+-..+..+.+.|+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 445555555555555555555555555555555555555555554444444444444
No 102
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.90 E-value=14 Score=41.95 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013334 150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 229 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l 229 (445)
.+|..+-++|..++.++.. +.. .+.+++...+.|+..|.-+ +.+...+...+.....++...
T Consensus 655 ~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~--------------~~~~~~~k~~l~~~~~El~~~ 716 (1141)
T KOG0018|consen 655 DQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYS--------------KLDLEQLKRSLEQNELELQRT 716 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555433 211 3444445555555554433 233333334455555555666
Q ss_pred HHHHHHHHhhhh
Q 013334 230 VQQNADLRSKIV 241 (445)
Q Consensus 230 ~qe~~~L~~~Iv 241 (445)
..++....|.|.
T Consensus 717 ~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 717 ESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHhhCchHH
Confidence 666666666555
No 103
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.86 E-value=0.017 Score=65.26 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 013334 368 NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 407 (445)
Q Consensus 368 ~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~ 407 (445)
.|..+++....+++.....+..+.++...+...+++.+..
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334444444444444443434444444444444444433
No 104
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.81 E-value=6.9 Score=37.94 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=59.5
Q ss_pred hcCCC-CCChhhhCCCChhHHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH-cCC
Q 013334 20 ETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTT-VNC 97 (445)
Q Consensus 20 ~~~i~-~~t~~dl~~Pt~~~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~l~~-~gv 97 (445)
.+|+| .|+.+.+..|+-+.|-.|..|++.-++-. ..++. . ++.. -.-+.|.+.+-.||-. .+|
T Consensus 2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~rydP~-----~~i~~-~---i~tE------~dRV~Fik~v~~~~~tKa~I 66 (267)
T PF10234_consen 2 ALGYPRLISMENFRTPNFELVAEILRWLVKRYDPD-----ADIPG-D---IDTE------QDRVFFIKSVAEFMATKARI 66 (267)
T ss_pred CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHcCCC-----CCCCC-c---CCcH------HHHHHHHHHHHHHHHHHhhe
Confidence 36775 68999999999999999999999554221 11111 1 1111 1225577777777666 456
Q ss_pred CCCCCcccccCCCcchHH---HHHHHHHHHHhhH
Q 013334 98 PMNFTLKDLIRPDATRTE---YFLSAILNFCLYK 128 (445)
Q Consensus 98 ~~DFt~~DL~~P~~~R~~---~iLSalINF~rFr 128 (445)
..+.+.||--|+.=++ ++-|-|.+-++-.
T Consensus 67 --KLN~KkLY~ADGyAVkELLKia~lLy~A~~~~ 98 (267)
T PF10234_consen 67 --KLNPKKLYQADGYAVKELLKIASLLYSAMKSA 98 (267)
T ss_pred --eecHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Confidence 5888888888776554 4456666666554
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=13 Score=41.08 Aligned_cols=56 Identities=23% Similarity=0.434 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 151 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 213 (445)
Q Consensus 151 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~ 213 (445)
.++.-|..+..+++.+++ ...++..++++|+.++...+..-.++...++.+|.+..
T Consensus 661 kyK~lI~~lD~~~e~lkQ-------~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQ-------MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444433 23344555555555555555554455555555554444
No 106
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.75 E-value=12 Score=40.49 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=30.9
Q ss_pred ccCCCcchHHHHHHHHHHHHhhHhhhhh---hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 106 LIRPDATRTEYFLSAILNFCLYKDTKMN---LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 106 L~~P~~~R~~~iLSalINF~rFre~~~~---~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
|++|. .-+.+|-.+.++..++..-.. .|..+..++..+..+......+++.++.+++++..
T Consensus 140 l~~~~--~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 140 LFRPD--EQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred hcCHH--HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 44444 344677766664434333322 33334444444444445555666666666666543
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.72 E-value=6.6 Score=37.43 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 013334 417 SKAEEIVE 424 (445)
Q Consensus 417 ~~y~~l~~ 424 (445)
..|++|..
T Consensus 178 ~~yeri~~ 185 (239)
T COG1579 178 SEYERIRK 185 (239)
T ss_pred HHHHHHHh
Confidence 34444443
No 108
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.71 E-value=6 Score=36.92 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=12.8
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHH
Q 013334 241 VQSPEKLQRTLEEKKSIREEARDAE 265 (445)
Q Consensus 241 v~SPe~lk~~l~e~k~~~~~l~~~e 265 (445)
-.++..+.+.+.+.....+++...+
T Consensus 65 ~~~~~~i~~~~~erdq~~~dL~s~E 89 (207)
T PF05010_consen 65 ELSEAEIQKLLKERDQAYADLNSLE 89 (207)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555555555544544444
No 109
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.70 E-value=6.8 Score=37.54 Aligned_cols=97 Identities=19% Similarity=0.321 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 013334 328 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSED----ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 403 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~ee----l~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~ 403 (445)
..++..+..+..++..|+..+......+...++. +.+.+.++.+.++........+...+ ++.++.....
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i------~krl~e~~~~ 161 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI------LKRLEEEENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 3455555556666666666655555555444333 44455555555555544444433322 3333444444
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHhH
Q 013334 404 VKESGAAKLQELASKAEEIVEKFQQYT 430 (445)
Q Consensus 404 ~~~~~e~ei~~i~~~y~~l~~~~~~Y~ 430 (445)
+...++.|...=+..|+.|.++++.+.
T Consensus 162 l~~~i~~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 162 LQEKIEKEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555444
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.65 E-value=14 Score=40.80 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=10.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
..+..++..+...+.+......++-
T Consensus 265 ~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 265 EQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443333333
No 111
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.43 E-value=0.022 Score=64.31 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334 386 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 386 ~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~ 437 (445)
.+...+..+--++..+..++..++.++..=..++..+......=+.+|...|
T Consensus 483 ~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L 534 (859)
T PF01576_consen 483 ALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL 534 (859)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH
Confidence 3334445555566666677777777666666666666555444444444444
No 112
>PRK09039 hypothetical protein; Validated
Probab=93.21 E-value=11 Score=38.22 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013334 145 LDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 145 l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
|.++......+++.|+.+|.++
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L 65 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAEL 65 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 5556666666777777666664
No 113
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.20 E-value=2.9 Score=32.16 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 219 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l 219 (445)
+.++.|..+...+-+.|+.|+.++.++ ..+|..|..+...|...-..|..+...+......+.+++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeL--------------ke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEEL--------------KEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555566666666666655544 344444444444444444455566666666666666665
Q ss_pred h
Q 013334 220 S 220 (445)
Q Consensus 220 ~ 220 (445)
+
T Consensus 70 ~ 70 (72)
T PF06005_consen 70 E 70 (72)
T ss_dssp H
T ss_pred h
Confidence 4
No 114
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.10 E-value=20 Score=41.16 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 197 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 197 ~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
....+...+..+.....+....+.++...+..+...+..+...+
T Consensus 397 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~ 440 (908)
T COG0419 397 ELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQI 440 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444433
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.09 E-value=17 Score=40.24 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=30.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
..+.++.+...|+.+|++++-....+-.+|.++.++.-.|...++.
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~ 115 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV 115 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3445566667777777777766667777777777777776665543
No 116
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=14 Score=39.14 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 308 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 357 (445)
Q Consensus 308 ~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~ 357 (445)
.++.+.-.+..++++.-.+......++.++-.-++.=+++-.++.++..+
T Consensus 205 RleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 205 RLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444445566666655555566667777665555555555555555554
No 117
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.01 E-value=7.4 Score=35.95 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013334 194 LNKHQVSLRTTLNKLKEKTGAL 215 (445)
Q Consensus 194 l~~~q~~l~~~~~~lk~e~~~l 215 (445)
|+..|......+..+...-+++
T Consensus 38 Lk~lq~Rq~kAL~k~e~~e~~L 59 (194)
T PF15619_consen 38 LKQLQKRQEKALQKYEDTEAEL 59 (194)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
Confidence 3443333333333343333333
No 118
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.93 E-value=23 Score=41.43 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=9.5
Q ss_pred hHHHHHHHHHH-HHh
Q 013334 37 DFVSDLYTRLL-IFL 50 (445)
Q Consensus 37 ~~v~~ly~~~l-~~~ 50 (445)
.+-..+|..|+ .+.
T Consensus 658 q~~s~~Y~k~Ie~~~ 672 (1294)
T KOG0962|consen 658 QGRSALYRKFIEIAC 672 (1294)
T ss_pred hhHHHHHHHHHHHHh
Confidence 55667788877 554
No 119
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.84 E-value=12 Score=37.97 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=51.0
Q ss_pred CCCChhHH--HHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCC
Q 013334 32 KNPNPDFV--SDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRP 109 (445)
Q Consensus 32 ~~Pt~~~v--~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P 109 (445)
.||..+|. ..+..|++...|.. |..-...++|.. ....+-.-++.+|++-||...-|-.=
T Consensus 36 ~Np~eQF~~F~~L~~WL~~~~g~~---------f~~p~e~DDPn~---------~~~~Il~~lr~~g~~~df~p~kLk~G 97 (359)
T PF10498_consen 36 TNPGEQFYYFTSLCAWLISKAGRK---------FEQPQEYDDPNA---------TISNILDELRKLGVPVDFPPSKLKQG 97 (359)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCC---------CCCCcccCCHHH---------HHHHHHHHHHccCCCCCCChHHhhCC
Confidence 36776653 45666666766643 211122355522 12222244667888779999999999
Q ss_pred CcchHHHHHHHHHHHHhhH
Q 013334 110 DATRTEYFLSAILNFCLYK 128 (445)
Q Consensus 110 ~~~R~~~iLSalINF~rFr 128 (445)
-+.-+-.+|.+|.+.+.=+
T Consensus 98 ~Ge~vc~VLd~Lad~AL~~ 116 (359)
T PF10498_consen 98 SGEHVCYVLDQLADEALKR 116 (359)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999887543
No 120
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.82 E-value=17 Score=39.50 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=24.1
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 173 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 214 (445)
Q Consensus 173 ~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~ 214 (445)
....+.+|+..-+....-|.+.+..|..|..+++.+|....+
T Consensus 266 s~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~ 307 (786)
T PF05483_consen 266 SQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQE 307 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 334555555555555555666666666666666655555444
No 121
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.78 E-value=17 Score=39.61 Aligned_cols=64 Identities=16% Similarity=0.360 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cc--hhHhHHHHHHHHHHHHHHHHHHHH
Q 013334 136 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE-------LP--LVQEVDAKVKELRQTIQDLNKHQV 199 (445)
Q Consensus 136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~-------~~--~~~el~~e~~~L~~~L~~l~~~q~ 199 (445)
..+.++...+.++......++..|...+.+++...... .| ....+..+...|..++..|..+..
T Consensus 32 ~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 32 QQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777788888888888876544321 11 112455556666666655554433
No 122
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.58 E-value=15 Score=38.27 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=43.8
Q ss_pred cCCCcchHHHHHHHHHH-HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 107 IRPDATRTEYFLSAILN-FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 170 (445)
Q Consensus 107 ~~P~~~R~~~iLSalIN-F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~ 170 (445)
..|+|.+...++.++++ |..+.-.... .....-...+..+...++.++...+.++..++.+.
T Consensus 139 ~~~dp~~A~~i~n~~~~~y~~~~~~~~~--~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 139 SGVDPRFAATVANAFAQAYIDTNIELKV--EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46999999999999997 7777443221 22233455566777888888888888888886654
No 123
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.51 E-value=4.3 Score=39.00 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=60.6
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 134 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 213 (445)
Q Consensus 134 ~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~ 213 (445)
.+.++...++.|..++.+-+=.++.|...++.-+.+-+.+......|..+|..|-.....|.+....+..++.--.....
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 34445555555555555555555555555555544444444444455566666666666666666666666555555555
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 214 ALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 214 ~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
-+.+.++.....+..+.+++.++++.+
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666555443
No 124
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.39 E-value=8.9 Score=35.32 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=24.1
Q ss_pred hcchHhhhcCCCchhH--HHHHHHHHHHHHHHHHHHHcCCC
Q 013334 60 QLDFAALEQLENPDLH--VRSVQIMKLYSMVKEVVTTVNCP 98 (445)
Q Consensus 60 ~~~~~~~~~l~~pe~~--~~s~~~l~~~~~~~~~l~~~gv~ 98 (445)
.|+|..+. .+++.+ --++|++.-|..+-.=+..++++
T Consensus 27 ~PHF~pL~--~~~e~~REg~A~Glm~~f~~l~e~v~~l~id 65 (190)
T PF05266_consen 27 SPHFSPLQ--EFKEELREGMAVGLMVTFANLAEKVKKLQID 65 (190)
T ss_pred CCCChhhh--cCcHHhhhHHHHHHHHHHHHHHHHHHHcccC
Confidence 46776654 333333 23467778888887878888887
No 125
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.37 E-value=19 Score=39.07 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=53.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE--KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 249 (445)
Q Consensus 175 ~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~--~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~ 249 (445)
+...+..+++..|+.....+.+...+++.+...+|.+.+...- .|.+....|..+..|-++|..++.+-..-+|.
T Consensus 402 sl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkK 478 (961)
T KOG4673|consen 402 SLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKK 478 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666777777777777777777888887777776654332 56677888888888888888777665554443
No 126
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.08 E-value=21 Score=38.96 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 326 LDKSLEAKLIERQGKVEQLDELQQQLE 352 (445)
Q Consensus 326 ~~~~L~~kl~e~q~k~e~l~e~~~~~~ 352 (445)
..+.|..++.+++.++..+++.++.+.
T Consensus 196 ~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 196 VKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334566666666666666666655443
No 127
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.00 E-value=10 Score=35.20 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHH
Q 013334 156 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL---DEKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 156 i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l---~~~l~~~~~~l~~l~qe 232 (445)
|..|..++.+++.+.+.....+.++..+|..|...|..+......|...+..+...+..+ ..++...+..+..++.+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455554445555556667777777777777777776666666666555554433 23444444444444444
Q ss_pred HHHHH
Q 013334 233 NADLR 237 (445)
Q Consensus 233 ~~~L~ 237 (445)
.+-|.
T Consensus 109 ~evL~ 113 (201)
T PF13851_consen 109 HEVLE 113 (201)
T ss_pred HHHHH
Confidence 44443
No 128
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=26 Score=39.70 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 013334 358 KSEDATRAFENVKLEMESK 376 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~ 376 (445)
++.+...++..++.++++.
T Consensus 447 r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 447 RMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 129
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.91 E-value=21 Score=38.59 Aligned_cols=41 Identities=27% Similarity=0.501 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 309 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ 349 (445)
Q Consensus 309 ~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~ 349 (445)
+.+.+..+...+.+...-.+.+...+.++..++..+++.+.
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~ 396 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQE 396 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555556666666666666666655554
No 130
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.83 E-value=25 Score=39.28 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=12.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKH 197 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~ 197 (445)
.+.+.+..+..++.++.+-...
T Consensus 359 ~~~q~~~ql~~le~~~~e~q~~ 380 (980)
T KOG0980|consen 359 RIEQYENQLLALEGELQEQQRE 380 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4455556666666655544443
No 131
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=21 Score=37.79 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
++.+.-.|+.+|++++-.-..|-.+|.++.++.-.+...++
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs 187 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS 187 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34455556666666665555566666666666555555444
No 132
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=26 Score=38.55 Aligned_cols=210 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 131 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 210 (445)
Q Consensus 131 ~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~ 210 (445)
+........+++..+.+....+.+++........++......---.+.+.+..|-.|-.+.-..+.....|+.++..+..
T Consensus 431 ~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~ 510 (698)
T KOG0978|consen 431 QIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEE 510 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013334 211 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMS 290 (445)
Q Consensus 211 e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~ 290 (445)
.+..+......+...+..++.+...|.+..-.....+. ..+..++.+.+.-.++.
T Consensus 511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~-------------------------~~~~~le~~kk~~~e~~ 565 (698)
T KOG0978|consen 511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELT-------------------------TLTQSLEMLKKKAQEAK 565 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH-------------------------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Q 013334 291 KQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERN--LKSEDATRAFEN 368 (445)
Q Consensus 291 ~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~--~~~eel~~~~~~ 368 (445)
.....++.-.+..... +.+++.++.+....+.....+...++..++.|+..+......-. .-.+-+..++..
T Consensus 566 ~~~~~Lq~~~ek~~~~------le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~ 639 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAK------LEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKE 639 (698)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHH
Q ss_pred HHH
Q 013334 369 VKL 371 (445)
Q Consensus 369 lke 371 (445)
.++
T Consensus 640 yK~ 642 (698)
T KOG0978|consen 640 YKE 642 (698)
T ss_pred HHh
No 133
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.38 E-value=23 Score=37.88 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=11.1
Q ss_pred HHhhHHHHHHhcHHHHHHHHHHHHHHHHH
Q 013334 397 ITSKTKFVKESGAAKLQELASKAEEIVEK 425 (445)
Q Consensus 397 le~~~~~~~~~~e~ei~~i~~~y~~l~~~ 425 (445)
+...+...+..+...+..-..+-..|..+
T Consensus 349 ~~ee~~~~~s~~~~k~~~ke~E~q~lr~~ 377 (511)
T PF09787_consen 349 YREELSRQKSPLQLKLKEKESEIQKLRNQ 377 (511)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 134
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.17 E-value=15 Score=35.27 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=36.9
Q ss_pred HHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhccc
Q 013334 397 ITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPV 439 (445)
Q Consensus 397 le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~~~ 439 (445)
+-..++.++.+...|.++=......|+.+++.|+..|-..|--
T Consensus 202 v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L~~ 244 (247)
T PF06705_consen 202 VLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQDGLRI 244 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4455668899999999999999999999999999999887753
No 135
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.10 E-value=14 Score=35.08 Aligned_cols=107 Identities=15% Similarity=0.245 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH
Q 013334 330 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 409 (445)
Q Consensus 330 L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e 409 (445)
+..++.+++....++...+...+.+. ..+.++.++++.|..|...-..++-....-+..++..++ +...-+....
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk----qa~~er~~~~ 80 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK----QAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44444455554445544444444333 566666666666666555544333332222333333333 3344555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhh-hh-hhccccc
Q 013334 410 AKLQELASKAEEIVEKFQQYTNS-IG-TLLPVTE 441 (445)
Q Consensus 410 ~ei~~i~~~y~~l~~~~~~Y~~~-~~-~~~~~~~ 441 (445)
..+..++.+|..|..+|+.-..+ ++ ..||.++
T Consensus 81 ~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~ 114 (230)
T PF10146_consen 81 EKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLE 114 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 77788889999999999887777 33 3355544
No 136
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.87 E-value=26 Score=39.21 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=75.6
Q ss_pred ccCCCcchHHHHHHHHHH-HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--hHhHHH
Q 013334 106 LIRPDATRTEYFLSAILN-FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL--VQEVDA 182 (445)
Q Consensus 106 L~~P~~~R~~~iLSalIN-F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~--~~el~~ 182 (445)
+..|+|.+...++.++++ |+.+.-+.. ......-.+.+.++...++.++...+.++++++.+...-.+. .+.+-.
T Consensus 234 ~~~~dP~~Aa~ilN~la~~Yi~~~l~~k--~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~ 311 (726)
T PRK09841 234 MTGDDPQLITRILNSIANNYLQQNIARQ--AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLE 311 (726)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 457999999999999997 776633322 233344566677788888888888888888887654321111 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
...+|++++..+......+...+..-- =.+..+...+..+.++...++.++..-|+.-+
T Consensus 312 ~~~~l~~ql~~l~~~~~~l~~~~~~~h-------P~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~ 370 (726)
T PRK09841 312 QIVNVDNQLNELTFREAEISQLYKKDH-------PTYRALLEKRQTLEQERKRLNKRVSAMPSTQQ 370 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC-------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 334444444444333222222111111 12233334455566677777777777776654
No 137
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.77 E-value=8 Score=36.09 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=48.4
Q ss_pred cccCCCcchHHHHH-HHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHH
Q 013334 105 DLIRPDATRTEYFL-SAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAK 183 (445)
Q Consensus 105 DL~~P~~~R~~~iL-SalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e 183 (445)
|+-+-++.=+++=| ||+|--..=.-.+.+.|.++.+.+..+.+...++..+...|..++.++.. ..++++.+
T Consensus 99 DvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~-------e~ee~~er 171 (290)
T COG4026 99 DVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEA-------EYEEVQER 171 (290)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 44444555555543 45543333233344555555555554444444444444434333333221 23333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 184 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 184 ~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
.+.|+-+...|+.....+..++..++.+-.++...++
T Consensus 172 lk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 172 LKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 4444444444444444444445555555555544444
No 138
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.77 E-value=35 Score=39.01 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhcccccc
Q 013334 410 AKLQELASKAEEIVEKFQQYTNSIGTLLPVTEI 442 (445)
Q Consensus 410 ~ei~~i~~~y~~l~~~~~~Y~~~~~~~~~~~~~ 442 (445)
...+.+...|....+..-.|+..+...+.++..
T Consensus 444 ~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 444 HDLDSLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred hcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 345555566666666666666666655555443
No 139
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.72 E-value=16 Score=36.14 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334 312 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 391 (445)
Q Consensus 312 ~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~ 391 (445)
.+..|+.|+..-...-..|...+..+.......++.-.++-....+.+.+.+.+++.|.+++..+..+....+.+|..+.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHhcH-----------------HHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 013334 392 TEVDAITSKTKFVKESGA-----------------AKLQELASKAEEIVEKFQQYTNSIGTL 436 (445)
Q Consensus 392 ~~v~~le~~~~~~~~~~e-----------------~ei~~i~~~y~~l~~~~~~Y~~~~~~~ 436 (445)
+.+..++.....+-...+ +|+..+..+|....+-.+.--.++...
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 140
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.26 E-value=11 Score=35.17 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
+++++..+.+++..|...-.+...+++...+....+..+.+.+..+.-++-.+..+|+++|.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 56777788888888877777777888888888888888888888888888888888888764
No 141
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.11 E-value=33 Score=37.59 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=64.9
Q ss_pred HhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 128 KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK 207 (445)
Q Consensus 128 re~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~ 207 (445)
..++..+|..++++..... ..+...|+..+++++++-...-..........+.-.-|+..+..+...-..++..+++
T Consensus 45 e~e~~~~y~~kve~a~~~~---~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~e 121 (660)
T KOG4302|consen 45 EQECLEIYKRKVEEASESK---ARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDE 121 (660)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655433 5566677777777776644332111010111111224555555555555555555555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH-HHHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ-RTLEEKKSIREEARD 263 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk-~~l~e~k~~~~~l~~ 263 (445)
-+.+..++..+|+.+...+..- ..+-..+.-+|..|- +.|+++...+.+|..
T Consensus 122 R~~ef~el~~qie~l~~~l~g~----~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ 174 (660)
T KOG4302|consen 122 RRAEFKELYHQIEKLCEELGGP----EDLPSFLIADESDLSLEKLEELREHLNELQK 174 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----ccCCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 5555555555555555444432 122233444444444 677777777755554
No 142
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.03 E-value=2.4 Score=39.15 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 206 NKLKEKTGALDEKFSQTEFDLVQSVQQNADL 236 (445)
Q Consensus 206 ~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L 236 (445)
+.++.+...+.-..+.++..+..+..|...|
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444333
No 143
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.02 E-value=5.5 Score=37.18 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 013334 330 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK 376 (445)
Q Consensus 330 L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~ 376 (445)
++.++.+++.++.+++....+...+....+++....+.+|+++....
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 144
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.02 E-value=31 Score=37.25 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 358 KSEDATRAFENVKLEMESKRQDLEA 382 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~~~e~ 382 (445)
.++++..++..++.++......+..
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555444444
No 145
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.01 E-value=37 Score=38.04 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013334 328 KSLEAKLIERQGKVEQLDEL 347 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~ 347 (445)
+++...+..+..+++.+...
T Consensus 497 e~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 497 ESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 146
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.72 E-value=10 Score=31.26 Aligned_cols=68 Identities=16% Similarity=0.326 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 147 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 147 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
....+++.++..|+..++..+.. ..+|..+.+.|++.+..|+.+..++......+..+..++...++.
T Consensus 9 as~~el~n~La~Le~slE~~K~S-------~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTS-------QGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554332 223445555555555555555555555555555555554444443
No 147
>PF15294 Leu_zip: Leucine zipper
Probab=89.63 E-value=11 Score=36.61 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 216 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~ 216 (445)
.|.++|..|+.+|..+.........+...+.....++.
T Consensus 136 rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 136 RLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555555444444444444443333
No 148
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.31 E-value=7 Score=35.12 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh-hhcCHHHHHHHHHHHHHH
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK-IVQSPEKLQRTLEEKKSI 257 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~-Iv~SPe~lk~~l~e~k~~ 257 (445)
+..+++.|+++|..|+..-. . .++...+.++..++..+...+..|++- ..-||+.++....+....
T Consensus 91 l~~~~k~l~~eL~~L~~~~t-----~-------~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~ 157 (169)
T PF07106_consen 91 LKKEVKSLEAELASLSSEPT-----N-------EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKW 157 (169)
T ss_pred HHHHHHHHHHHHHHHhcCCC-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 34455555555555554322 1 233334444444444444444445432 224677777655554443
No 149
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=89.20 E-value=17 Score=33.15 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334 112 TRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 191 (445)
Q Consensus 112 ~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L 191 (445)
+.+..+.+.++||..-...-.+.+-++++. .....+...|..|...+... ..+...+ +
T Consensus 73 P~ii~~~~~I~~Y~~~f~syY~~L~~~id~-----~~~~~~~~~i~~L~~~i~~~--------------q~~~~~~---i 130 (184)
T PF05791_consen 73 PQIIDLNQDIINYNTTFQSYYDTLVEAIDQ-----KDKEDLKEIIEDLQDQIQKN--------------QDKVQAL---I 130 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHHHHHHH--------------HHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCc-----ccHHHHHHHHHHHHHHHHHH--------------HHHHHHH---H
Confidence 367789999999987555444433333311 12344555555565544433 2233333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 192 QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 192 ~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
.+|+.-+..+..+...++.....+..-+..-...+..++.+++.+++.|-
T Consensus 131 ~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 131 NELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 44455555678888889999999999988888888888999888887764
No 150
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.14 E-value=61 Score=39.31 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=8.5
Q ss_pred HHhhHhhhhhhhHHH
Q 013334 124 FCLYKDTKMNLLRPI 138 (445)
Q Consensus 124 F~rFre~~~~~~~~~ 138 (445)
|++-.+++...+++.
T Consensus 274 ~~r~~eERR~liEEA 288 (1486)
T PRK04863 274 YMRHANERRVHLEEA 288 (1486)
T ss_pred HhhCHHHHHHHHHHH
Confidence 455566666655554
No 151
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.81 E-value=10 Score=34.87 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=14.6
Q ss_pred HhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhccchhHhHHHHHHHHHHHHHHHHH
Q 013334 125 CLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR--------ERELPLVQEVDAKVKELRQTIQDLNK 196 (445)
Q Consensus 125 ~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~--------~~~~~~~~el~~e~~~L~~~L~~l~~ 196 (445)
++-|+.+-+.|.+++..|..|..+...+......+..+........ ....+.+..+....-.+..+|.++.+
T Consensus 9 L~~Rd~~e~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r 88 (194)
T PF08614_consen 9 LRERDRREKAFAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYR 88 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3446666677888888887777766677766666665433221100 01122345566777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 197 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 197 ~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
.+..+...+..+..+...+...+......+..+..++..|+.++.
T Consensus 89 ~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 89 SKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIK 133 (194)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888877777777775553
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.72 E-value=20 Score=33.27 Aligned_cols=105 Identities=20% Similarity=0.286 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 013334 145 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT---TLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 145 l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~---~~~~lk~e~~~l~~~l~~ 221 (445)
|.++..+++.+.....+...++......-..++..++.++.+|+..|..+.+...+|.. .+..+..+...+.-+-+-
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ev 111 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEV 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444544444444446678889999999999999887776443 333334444444445555
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334 222 TEFDLVQSVQQNADLRSKIVQSPEKLQR 249 (445)
Q Consensus 222 ~~~~l~~l~qe~~~L~~~Iv~SPe~lk~ 249 (445)
+...+..+.++.+.|..+-..++..++.
T Consensus 112 L~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 112 LEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666555555553
No 153
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.62 E-value=41 Score=36.67 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013334 326 LDKSLEAKLIERQGKVEQLDE 346 (445)
Q Consensus 326 ~~~~L~~kl~e~q~k~e~l~e 346 (445)
.+..|++++...+.-...++.
T Consensus 545 ~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 545 LAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 334445554444444444444
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.07 E-value=10 Score=37.87 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=45.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
..++.++...|+.+...+.......-..++.+.-+..++.++...+...+.-....+++|+.
T Consensus 73 ~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 73 REELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666667777777776666777777777777777778888888888888888888874
No 155
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.99 E-value=0.15 Score=56.67 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhhhhc
Q 013334 422 IVEKFQQYTNSIGTLL 437 (445)
Q Consensus 422 l~~~~~~Y~~~~~~~~ 437 (445)
|...++.|...|...|
T Consensus 448 l~~~~~~~~~ele~~l 463 (722)
T PF05557_consen 448 LEQLVDEYKAELEAQL 463 (722)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 156
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=87.93 E-value=13 Score=38.12 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
.....+..+|.++...+..|...++.++.+. ..++.-....+.+-+-..++|+.++-+.-+--+.++..+|..+
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~---~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeL 285 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQY---QREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQEL 285 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667777777777777776642 2233333344444445556666666666666666666666655
No 157
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.92 E-value=23 Score=33.04 Aligned_cols=119 Identities=15% Similarity=0.236 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 013334 288 KMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE 367 (445)
Q Consensus 288 ~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~ 367 (445)
++........+++.+..++|.+-..++.. -..|..-+.+...++...+..+.++.......++..+.+|+
T Consensus 84 dL~s~E~sfsdl~~ryek~K~vi~~~k~N----------EE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~ 153 (207)
T PF05010_consen 84 DLNSLEKSFSDLHKRYEKQKEVIEGYKKN----------EETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA 153 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334555555555555554444221 12344455566666666666666666666666666666666
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH---HHHHHHHHHHHHHHHHH
Q 013334 368 NVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA---AKLQELASKAEEIVEKF 426 (445)
Q Consensus 368 ~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e---~ei~~i~~~y~~l~~~~ 426 (445)
.++......... +.+.++.-+..+.++....+ .|..++...|..|.+.+
T Consensus 154 ~v~~~~~~e~~a----------Lqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 154 QVRSKHQAELLA----------LQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655554444322 33333333444444443333 45555666666665543
No 158
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.87 E-value=29 Score=34.03 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=53.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS-------QTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~-------~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
.+.-|.++|.-|.++|..=+...+.|..+++.+....+....+.+ +++..+.+...|.-.|+.++-.....|+
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 556677788888888877777777788888888777777666544 3444455556666666666555555555
Q ss_pred HHHHHHHHHH
Q 013334 249 RTLEEKKSIR 258 (445)
Q Consensus 249 ~~l~e~k~~~ 258 (445)
...+-++..+
T Consensus 144 d~ne~LsQqL 153 (305)
T PF14915_consen 144 DNNEILSQQL 153 (305)
T ss_pred HHhHHHHHHH
Confidence 4444444444
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.86 E-value=26 Score=39.04 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
+...++.++..++.....|+.+++.+.+....+..++..
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666666666655555555443
No 160
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.78 E-value=34 Score=34.73 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013334 183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL 226 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l 226 (445)
+.+..++++..+++....-..++..+.++...+..++..+..+-
T Consensus 117 e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr 160 (499)
T COG4372 117 EREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR 160 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433333344444444444444444333333
No 161
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.62 E-value=19 Score=37.16 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=2.7
Q ss_pred hHhhhhh
Q 013334 127 YKDTKMN 133 (445)
Q Consensus 127 Fre~~~~ 133 (445)
|.++.+.
T Consensus 336 y~e~~~~ 342 (493)
T KOG0804|consen 336 YYEQIMS 342 (493)
T ss_pred HHHHHHH
Confidence 3444333
No 162
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.53 E-value=4.2 Score=41.04 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=15.3
Q ss_pred CCChhhh------CCCChhHHHHHHHHHHHHhcc
Q 013334 25 VITENDL------KNPNPDFVSDLYTRLLIFLDV 52 (445)
Q Consensus 25 ~~t~~dl------~~Pt~~~v~~ly~~~l~~~~~ 52 (445)
+++..|| .+|. ..|..|+..++.+||.
T Consensus 100 ~l~k~di~Eiks~~~PP-~~V~~V~~aV~iLl~~ 132 (344)
T PF12777_consen 100 SLDKSDISEIKSYANPP-EAVKLVMEAVCILLGP 132 (344)
T ss_dssp CS-HHHHHHHHHSSS---HHHHHHHHHHHHHTT-
T ss_pred hCCHHHHHHHHhhCCCc-HHHHHHHHHHhhHHhc
Confidence 3555555 3554 4577888887777764
No 163
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.35 E-value=12 Score=38.12 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHhhcCC-CCCChhhhCCCChhHHHHHHHHHH-HHh
Q 013334 7 PRLSATEIVTILTETEI-AVITENDLKNPNPDFVSDLYTRLL-IFL 50 (445)
Q Consensus 7 P~l~~~EIv~~L~~~~i-~~~t~~dl~~Pt~~~v~~ly~~~l-~~~ 50 (445)
|.-...-|...|+.+|+ ++|.+.-|..=..+.|..|.-.+. ..+
T Consensus 69 Pn~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL 114 (359)
T PF10498_consen 69 PNATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEAL 114 (359)
T ss_pred HHHHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHH
Confidence 44456678888999998 489999999999999999988888 666
No 164
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.91 E-value=7.2 Score=43.52 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHH
Q 013334 384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIV 423 (445)
Q Consensus 384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~ 423 (445)
..++..+.+++...+..+.-+++-|.+.+.++..-+..|.
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~ll 644 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLL 644 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666667777777777777777766666655543
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.61 E-value=60 Score=36.42 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 200 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 200 ~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
.+......+........++++.....+.+.++.+..|++++.
T Consensus 600 ~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 600 KLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555666666666666666666666655
No 166
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.37 E-value=14 Score=34.43 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013334 333 KLIERQGKVEQLDELQQQLEKE 354 (445)
Q Consensus 333 kl~e~q~k~e~l~e~~~~~~~e 354 (445)
++..++.++..++.++......
T Consensus 94 rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444433333
No 167
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.35 E-value=52 Score=35.46 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=15.5
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHH
Q 013334 240 IVQSPEKLQRTLEEKKSIREEARDA 264 (445)
Q Consensus 240 Iv~SPe~lk~~l~e~k~~~~~l~~~ 264 (445)
++.-|++++..++++...+..+++.
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k~q 143 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLKTQ 143 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh
Confidence 5666667777777766665554443
No 168
>PRK10869 recombination and repair protein; Provisional
Probab=86.31 E-value=53 Score=35.48 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=40.4
Q ss_pred HHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhh---hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013334 89 KEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTK---MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAA 165 (445)
Q Consensus 89 ~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~---~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~ 165 (445)
..++...|.+ +- .-|++|... +.+|-.+.+...++..- ...|..+..++..+.........+++-++-++++
T Consensus 122 ~~li~ihgQ~-~~--~~ll~~~~~--~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~E 196 (553)
T PRK10869 122 QLLIQIHGQH-AH--QLLLKPEHQ--KTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKE 196 (553)
T ss_pred HhhhheeCcC-hH--HHhcCHHHH--HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555666765 31 233455444 46777666543444433 2334445555555555555556666667766666
Q ss_pred HHH
Q 013334 166 YNE 168 (445)
Q Consensus 166 ~~~ 168 (445)
+..
T Consensus 197 i~~ 199 (553)
T PRK10869 197 LNE 199 (553)
T ss_pred HHh
Confidence 644
No 169
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=86.20 E-value=0.73 Score=40.44 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHHHHhcc
Q 013334 14 IVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLDV 52 (445)
Q Consensus 14 Iv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l~~~~~ 52 (445)
+-..+..||+++|+-.||.+|+|.-+..+...++.|+-.
T Consensus 90 ~~~~~~~~gv~DF~l~Dl~~P~~~R~~~~LSalINF~~F 128 (146)
T PF03800_consen 90 LQKFLKDCGVPDFSLSDLLKPDPKRTRRILSALINFARF 128 (146)
T ss_dssp HHHHHHHTT-----HHHHHS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 344578899999999999999999999999999977644
No 170
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.94 E-value=19 Score=30.80 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 013334 366 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE 406 (445)
Q Consensus 366 ~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~ 406 (445)
....++++...+++++.....++.+...|..|+.+|..+..
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566666667777666677777777777777776653
No 171
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.93 E-value=14 Score=28.64 Aligned_cols=65 Identities=25% Similarity=0.374 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 143 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 143 ~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
+.|.++..+.-+.|.-|+.++++++ .+|..|..+...+......|..+...++.+.....++|..
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELK--------------ekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELK--------------EKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666766776665553 4445555555555555555555555555555555544443
No 172
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.80 E-value=40 Score=33.60 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334 366 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 366 ~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~ 427 (445)
+.+++.++......++........+.+.+.+.+...+.-+.=...|+..+...|..|++..+
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 33344444444444444444444445555555555555555566889999999888887654
No 173
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.69 E-value=12 Score=28.85 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
.+..|..+-..|.+.+..+...+..++....++...+..+...+..+..+++.|+..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555555555555555543
No 174
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.64 E-value=12 Score=28.50 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
|++.+..|...|..+.++-...-.....+..+.+.....+..+-..+..+..+++.|+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665566666666777777777777777777777776666654
No 175
>PRK11281 hypothetical protein; Provisional
Probab=85.45 E-value=83 Score=36.96 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC
Q 013334 185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 243 (445)
Q Consensus 185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~S 243 (445)
..|++.|..+.....+.......+..+.....+..+.+...+.+..+....++.++..+
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~ 182 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG 182 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34666666666666666667777777777777777777777777777777777766553
No 176
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.41 E-value=35 Score=32.62 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 013334 188 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 253 (445)
Q Consensus 188 ~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e 253 (445)
...+..|+..+..|.......+.+-+-+.-++...+.+...+...|..|+++...|.-.+.+.|-+
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD 172 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD 172 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence 344455555555566666666666667778888888888888889999988877777666666533
No 177
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.28 E-value=16 Score=28.45 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013334 145 LDEQRSELEDKISQLNA 161 (445)
Q Consensus 145 l~~~~~~l~~~i~~l~~ 161 (445)
|.-+..+++++...|..
T Consensus 23 LqmEieELKekn~~L~~ 39 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444443333
No 178
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.21 E-value=96 Score=37.44 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 013334 317 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDA 396 (445)
Q Consensus 317 k~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~ 396 (445)
..++..-.......+..+...+.++..+..++..........++++..++..+..++....+++.............+..
T Consensus 881 ~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~ 960 (1353)
T TIGR02680 881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGR 960 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333334445555555556666665555555555544456666666666655555555555544444444433333
Q ss_pred H
Q 013334 397 I 397 (445)
Q Consensus 397 l 397 (445)
.
T Consensus 961 a 961 (1353)
T TIGR02680 961 A 961 (1353)
T ss_pred H
Confidence 3
No 179
>PLN02939 transferase, transferring glycosyl groups
Probab=85.17 E-value=78 Score=36.41 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013334 189 QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 228 (445)
Q Consensus 189 ~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~ 228 (445)
..+.-||+-...--.+++.+-.++..+..+|.-++..+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 142 KNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 3333344444333444444455555555555444444443
No 180
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.00 E-value=23 Score=30.09 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHH
Q 013334 388 EAVVTEVDAITSKTKFVKESGAAKLQE 414 (445)
Q Consensus 388 e~~~~~v~~le~~~~~~~~~~e~ei~~ 414 (445)
.....++..++.++.++|.=|-..|+.
T Consensus 92 GEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 92 GEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666667777777777666654
No 181
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.94 E-value=31 Score=31.68 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=32.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHH
Q 013334 137 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK 196 (445)
Q Consensus 137 ~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~ 196 (445)
.....++.+..+...+..++..+...++.....+... .....+.++.++|+.++..|..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKK 124 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666777777777777777765544333 1223333444444444444443
No 182
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.68 E-value=15 Score=27.74 Aligned_cols=63 Identities=24% Similarity=0.371 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334 143 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 219 (445)
Q Consensus 143 ~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l 219 (445)
+.+.+..++.-+.|.-|+.++++++.+ |..|.++..++....++|..+-+.+|.+......+|
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEk--------------nn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEK--------------NNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666777777776666443 334444444444444444444444444444444433
No 183
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=84.68 E-value=18 Score=33.42 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHH
Q 013334 296 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKL 334 (445)
Q Consensus 296 l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl 334 (445)
.+.+.---..+.+++..++.|..+|.+...++++|+.+.
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRS 166 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555655566777888888899999998888888887653
No 184
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.68 E-value=35 Score=31.92 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHhhH
Q 013334 112 TRTEYFLSAILNFCLYK 128 (445)
Q Consensus 112 ~R~~~iLSalINF~rFr 128 (445)
+|+.+++.|.+|-+-=+
T Consensus 4 ~Rl~~~~~a~~~~~ld~ 20 (221)
T PF04012_consen 4 KRLKTLVKANINELLDK 20 (221)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57777788877766543
No 185
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.52 E-value=27 Score=30.58 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334 384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~ 427 (445)
.........++..+...+...+..++.|++.-..+|++|..++.
T Consensus 107 ~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 107 EAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556677777888889999999999999999999988753
No 186
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.22 E-value=34 Score=31.41 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=18.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
.+|...|++++..=.++..+..+|+..|.
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve 32 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVE 32 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566666666666667777777765544
No 187
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.21 E-value=39 Score=32.12 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
|.++.+..+.|..+....-++...+..+|+.++..+..++.+..+....|
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444455555555555555555544333
No 188
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.31 E-value=27 Score=29.57 Aligned_cols=83 Identities=18% Similarity=0.339 Sum_probs=43.5
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hccchhHhHHHHHHHHHHHHHHHHHHH
Q 013334 134 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE---------------RELPLVQEVDAKVKELRQTIQDLNKHQ 198 (445)
Q Consensus 134 ~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~---------------~~~~~~~el~~e~~~L~~~L~~l~~~q 198 (445)
.|..+.+++..+..+...++..+......+.++..-.+ .....+.+|+.+..-|+-++..|.++.
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe 93 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQE 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555444422000 011244566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013334 199 VSLRTTLNKLKEKTGALD 216 (445)
Q Consensus 199 ~~l~~~~~~lk~e~~~l~ 216 (445)
..+..+++++++....+.
T Consensus 94 ~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 94 EKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666555443
No 189
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.21 E-value=1e+02 Score=36.10 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQL 351 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~ 351 (445)
.+..++..++..++++...++..
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666655555443
No 190
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=81.91 E-value=46 Score=31.31 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 198 QVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 198 q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
|.....++..+..+-.++..+.-+++.....+++++..|+
T Consensus 170 Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 170 QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555554
No 191
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.30 E-value=64 Score=32.58 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=35.6
Q ss_pred ccCCCcchHHHHHHHHHHHH-hhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 106 LIRPDATRTEYFLSAILNFC-LYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 169 (445)
Q Consensus 106 L~~P~~~R~~~iLSalINF~-rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 169 (445)
...++|.....+..++++++ .|-+. . ......+....+.++...++.++...+..+.+++.+
T Consensus 137 ~~~~dP~~A~~ian~l~~~~~~~i~~-~-~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 137 VTAFDAEEAQKINQRLLKEGERLINR-L-NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688888888888888742 11111 1 011122344455566666677777666666666553
No 192
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=81.11 E-value=21 Score=26.83 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=29.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 222 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~ 222 (445)
+++|..+|..|.+++..+......|....+....+...|..++-.+
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566677777777777776666666666666666666665555443
No 193
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.04 E-value=63 Score=32.26 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh-------HHHHHHh---cHHHHHHHHHHHHHHHHHHH
Q 013334 358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK-------TKFVKES---GAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~-------~~~~~~~---~e~ei~~i~~~y~~l~~~~~ 427 (445)
++.+++..+..+-.+.++...+++..+.....++.++..+=+- ++.+-.. ....+..+..+-..+...+.
T Consensus 141 q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 141 QIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555444444444444332111 2222211 23567788888899999999
Q ss_pred HhHhhhhh
Q 013334 428 QYTNSIGT 435 (445)
Q Consensus 428 ~Y~~~~~~ 435 (445)
.|-..+..
T Consensus 221 KYK~~le~ 228 (319)
T PF09789_consen 221 KYKSALER 228 (319)
T ss_pred HHHHHHHh
Confidence 99887773
No 194
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=80.95 E-value=43 Score=32.49 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=27.1
Q ss_pred HhhhHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH
Q 013334 355 RNLKSEDATRAFENVKLEM-ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 409 (445)
Q Consensus 355 ~~~~~eel~~~~~~lkee~-e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e 409 (445)
|...|.+++.++...++.| ++.=+..|+.-+ .+...++|+.|..-++.++.+..
T Consensus 87 RetEI~eLksQL~RMrEDWIEEECHRVEAQLA-LKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 87 RETEIDELKSQLARMREDWIEEECHRVEAQLA-LKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455555666666656555 333444444433 33344555555555555554443
No 195
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.65 E-value=77 Score=33.04 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=35.9
Q ss_pred chhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 175 PLVQEVDAKVKELRQTIQDLNK---HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 175 ~~~~el~~e~~~L~~~L~~l~~---~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
..++.|+-.|--|+.++.+|.- .|..+..-++++|....+|...-...-.+...+..-..+|.
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLq 396 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQ 396 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHH
Confidence 3455666666666666666643 34456666777777777776655554444444444444443
No 196
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.65 E-value=22 Score=26.85 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334 201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLE 252 (445)
Q Consensus 201 l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~ 252 (445)
|.-+++++|++.+.+..+..++......+..+.+.|+..-..=.++|.+.|-
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666677776666666666666666666666666555544555554443
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.93 E-value=80 Score=32.79 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAF 366 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~ 366 (445)
.|.+...-|..++.++++..+......+.++.+++.++
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444444444444444444443
No 198
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.61 E-value=1.1e+02 Score=34.22 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=71.8
Q ss_pred HHHHHHHHHHH-cCCCCCC-Cccc-ccCCCcchHHHHHHHHHHHHhhHhhhh----hhhHHHHHHHHhHHHHHHHHHHHH
Q 013334 84 LYSMVKEVVTT-VNCPMNF-TLKD-LIRPDATRTEYFLSAILNFCLYKDTKM----NLLRPIAEDLTRLDEQRSELEDKI 156 (445)
Q Consensus 84 ~~~~~~~~l~~-~gv~~DF-t~~D-L~~P~~~R~~~iLSalINF~rFre~~~----~~~~~~~~e~~~l~~~~~~l~~~i 156 (445)
|-.+++.+|.. ...| =+ .-.| -..|.+.=...+|+--++-+| ++=+ -...++......+..+.+....++
T Consensus 505 F~~~Ik~lL~r~~~qP-ill~s~~k~~~p~~~E~l~lL~~a~~vlr--eeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L 581 (717)
T PF10168_consen 505 FEKHIKSLLQRSSSQP-ILLKSSDKSSSPSPQECLELLSQATKVLR--EEYIEKQDLAREEIQRRVKLLKQQKEQQLKEL 581 (717)
T ss_pred HHHHHHHHhcCCCCCC-eecCCCccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666553 2333 22 1223 345666666777766555443 3311 122333333333333333223333
Q ss_pred HHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 157 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 236 (445)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L 236 (445)
.+++.++ +.+...-+.|..++......|+.|..+.+.+-.....-.-.++.++ ....+|...+
T Consensus 582 ~~l~e~~--------------~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE---r~~~~EL~~~ 644 (717)
T PF10168_consen 582 QELQEER--------------KSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE---REFKKELERM 644 (717)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH---HHHHHHHHHH
Confidence 3333332 2334444566667777777777777777766555544333344433 2334455555
Q ss_pred HhhhhcCHHHHHHHHHHHHHHH
Q 013334 237 RSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 237 ~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
+.++ ..++..+++.+..+
T Consensus 645 ~~~l----~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 645 KDQL----QDLKASIEQLKKKL 662 (717)
T ss_pred HHHH----HHHHHHHHHHHHHH
Confidence 5543 33555555554443
No 199
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.37 E-value=62 Score=31.24 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHhhhhHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLEKERNL-------KSEDATRAFENVKLEMESKRQDLE 381 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~~e~~~-------~~eel~~~~~~lkee~e~~~~~~e 381 (445)
.|+.++..+..++....+.+.-+.-..+. +|+++.+++..++........+++
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~ 144 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELN 144 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333322 444455554444444444443333
No 200
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.22 E-value=85 Score=32.99 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=48.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 136 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 215 (445)
Q Consensus 136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l 215 (445)
.++..+..--.++.+..+.+|..+...+.++.-......+.+.++..++.+|..++..+--.|+-++..=-.++..-++|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Confidence 33444443333444444445555554444444111223344555555555665555555555544442222222222222
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 216 DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 216 ~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
..++..+ -..+..|..++..|.++.+..
T Consensus 417 r~Kldtl---------------l~~ln~Pnq~k~Rl~~L~e~~ 444 (508)
T KOG3091|consen 417 RAKLDTL---------------LAQLNAPNQLKARLDELYEIL 444 (508)
T ss_pred HHHHHHH---------------HHHhcChHHHHHHHHHHHHHH
Confidence 2222111 123566777777777765543
No 201
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.39 E-value=62 Score=30.65 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013334 297 QAILEQVNSAKSIEKDYKSLKARLND 322 (445)
Q Consensus 297 ~~~~e~~~~~k~~e~~~k~lk~kl~~ 322 (445)
+.+...+...+..++.+..+.....+
T Consensus 45 ~~~A~~~a~~k~~e~~~~~~~~~~~k 70 (225)
T COG1842 45 QALAQAIARQKQLERKLEEAQARAEK 70 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 202
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.33 E-value=28 Score=26.69 Aligned_cols=43 Identities=19% Similarity=0.344 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 178 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 178 ~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
.-|..++.+|+.+-..|......|..+...++.+.+....+|.
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555444443
No 203
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=78.25 E-value=44 Score=28.85 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 013334 194 LNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP 244 (445)
Q Consensus 194 l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SP 244 (445)
+......+...+..++.++.++..+|..+...... +.+.+.|-..|...|
T Consensus 79 Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~-k~eyd~La~~I~~~p 128 (139)
T PF05615_consen 79 YEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN-KEEYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Confidence 44444444555555556666666666555554443 557777777777777
No 204
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.04 E-value=26 Score=26.03 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 013334 294 AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD 345 (445)
Q Consensus 294 ~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~ 345 (445)
.--+.+.++++.++.. ...+..+|.+...+...|..++..+..++++++
T Consensus 11 rakQ~~~eEL~kvk~~---n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSA---NLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666555443 333466666655555555555555555555443
No 205
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.03 E-value=46 Score=33.19 Aligned_cols=39 Identities=13% Similarity=0.349 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 202 ~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
..+...++.+-.+.-...+....++....++...+..++
T Consensus 84 e~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 84 EEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455555555555555555443
No 206
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.00 E-value=37 Score=27.83 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=38.3
Q ss_pred HHHhhHhhhh--hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHhHHHHHHHHHHHHHHHHHH
Q 013334 123 NFCLYKDTKM--NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER---ELPLVQEVDAKVKELRQTIQDLNKH 197 (445)
Q Consensus 123 NF~rFre~~~--~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~---~~~~~~el~~e~~~L~~~L~~l~~~ 197 (445)
|+-.|++... ......++++-.+..++.++..+++.++.+-+.+...-.. ..+...++.++.+.++.++..+...
T Consensus 10 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 10 NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555532 2345566666667777777777666666554444322111 1123444445555555555444433
No 207
>smart00338 BRLZ basic region leucin zipper.
Probab=77.99 E-value=21 Score=26.48 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013334 109 PDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAA 165 (445)
Q Consensus 109 P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~ 165 (445)
+++++.++.+.-=+==.+||+-+...+..+..++..+..+...|..++..|..++..
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444455666555555555555555554444444444444444333
No 208
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=77.87 E-value=58 Score=30.00 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 254 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~ 254 (445)
+...+.--.+...+.++.-..++-+..+.++...+.--.-.++...-++.
T Consensus 69 LkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~ 118 (205)
T KOG1003|consen 69 LKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDL 118 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555555555555555544444444444433333
No 209
>PRK10698 phage shock protein PspA; Provisional
Probab=77.85 E-value=63 Score=30.46 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHHH
Q 013334 112 TRTEYFLSAILNFC 125 (445)
Q Consensus 112 ~R~~~iLSalINF~ 125 (445)
.|+..++.|=||=+
T Consensus 5 ~Rl~~ii~a~in~~ 18 (222)
T PRK10698 5 SRFADIVNANINAL 18 (222)
T ss_pred HHHHHHHHhHHHHH
Confidence 45666666666544
No 210
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.71 E-value=1.4e+02 Score=34.44 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=45.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
.++++..++..++..|..+...+.........+++++..+..+|.....++..+..+..+++..+
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777666655566667777777777777777777777776666666553
No 211
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=77.44 E-value=59 Score=29.92 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=28.0
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHH
Q 013334 319 RLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLE 381 (445)
Q Consensus 319 kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e 381 (445)
+.......++-+..||.+...+-+..+.....+.++ ++++..++...+.++......++
T Consensus 138 ~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke----~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 138 KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKE----RDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHccc----HHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333344455556666665555555444444333 33444445444444444444333
No 212
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.94 E-value=1e+02 Score=32.49 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 013334 384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ 428 (445)
Q Consensus 384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~ 428 (445)
...++.....|..++..-..-......+|..+..--..|...+.+
T Consensus 146 ~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~n 190 (475)
T PRK10361 146 REQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAIN 190 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555444444555555555555555555544443
No 213
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.86 E-value=58 Score=29.47 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 013334 150 SELEDKISQLNAEIAA 165 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~ 165 (445)
-.+++.+.+++.++..
T Consensus 54 ~~~~a~~~eLr~el~~ 69 (177)
T PF07798_consen 54 YLFKAAIAELRSELQN 69 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666554
No 214
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.71 E-value=57 Score=29.38 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=46.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 141 DLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 141 e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
.|+.+..+...+..+|++-..++..++.+-.... .-....+..+..+......+..++.........+...+.
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v-------~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~ 115 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV-------QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELY 115 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555444444444433222111 122333334444444444444555555555555555555
Q ss_pred hhHHHHHHHHHHHHHHHhh--hhcCHHHHH
Q 013334 221 QTEFDLVQSVQQNADLRSK--IVQSPEKLQ 248 (445)
Q Consensus 221 ~~~~~l~~l~qe~~~L~~~--Iv~SPe~lk 248 (445)
.+......+...+.+|+.+ ++..|+=+.
T Consensus 116 ~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~ 145 (177)
T PF13870_consen 116 RVKKERDKLRKQNKKLRQQGGLLGVPALLR 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 5555555555555555533 556665544
No 215
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.73 E-value=63 Score=29.33 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 013334 151 ELEDKISQLNA 161 (445)
Q Consensus 151 ~l~~~i~~l~~ 161 (445)
.+..++.++..
T Consensus 92 ~l~~el~~l~~ 102 (191)
T PF04156_consen 92 QLQEELDQLQE 102 (191)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 216
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.67 E-value=66 Score=29.59 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH
Q 013334 356 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 409 (445)
Q Consensus 356 ~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e 409 (445)
...+.+++.++..++..........++...++....+.+..+...+.+++..|+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333344444445555544444444444443
No 217
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.57 E-value=84 Score=33.35 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 191 IQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 191 L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
...++..|..|......|+.+...|.+.|..+...+..-..+|+.|+
T Consensus 468 ~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 468 NQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566678888888899999999999999888888888888887
No 218
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.56 E-value=1.4e+02 Score=33.28 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHH
Q 013334 154 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 199 (445)
Q Consensus 154 ~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~ 199 (445)
.....|+.++.+++.+..+-.....+|+.+|=.|...+..|+..|-
T Consensus 76 ~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv 121 (717)
T PF09730_consen 76 LERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV 121 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333444445555444444334455666666666666666666554
No 219
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.95 E-value=53 Score=28.15 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHh
Q 013334 363 TRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 429 (445)
Q Consensus 363 ~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y 429 (445)
-+.+..++.++......+.......+.....+...+..-..-+..++.++..+...+..|..+=..-
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555566666666666666667777777777777777777776654433
No 220
>PRK11519 tyrosine kinase; Provisional
Probab=74.68 E-value=1.5e+02 Score=33.17 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=43.0
Q ss_pred ccCCCcchHHHHHHHHHH-HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 106 LIRPDATRTEYFLSAILN-FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 170 (445)
Q Consensus 106 L~~P~~~R~~~iLSalIN-F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~ 170 (445)
...|+|.+...++.++++ |+...-+.. ........+.+.++...++.++...+..+++++.+.
T Consensus 234 ~~~~dP~~Aa~iaN~l~~~Yi~~~~~~k--~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 234 YTGEDREQIRDILNSITRNYLEQNIERK--SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457999999999999985 444422221 233334555667777888888888888888886643
No 221
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.27 E-value=1.4e+02 Score=32.75 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHh
Q 013334 113 RTEYFLSAILNFCL 126 (445)
Q Consensus 113 R~~~iLSalINF~r 126 (445)
+.++.=|-+-|+-+
T Consensus 180 ~~~~~~s~l~~~ek 193 (716)
T KOG4593|consen 180 RAKRLHSELQNEEK 193 (716)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555566654
No 222
>PLN02939 transferase, transferring glycosyl groups
Probab=74.22 E-value=1.7e+02 Score=33.73 Aligned_cols=58 Identities=24% Similarity=0.442 Sum_probs=29.4
Q ss_pred CCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013334 96 NCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAA 165 (445)
Q Consensus 96 gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~ 165 (445)
++. +|.+.||. --|-+|=-|.+..-..|...++ ..+....+.+.++.+|.-|...+.+
T Consensus 124 ~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 124 QLS-DFQLEDLV-------GMIQNAEKNILLLNQARLQALE----DLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred ccc-cccHHHHH-------HHHHHHHhhhHhHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 466 78888874 3444444455555555444332 2223333344555555555554444
No 223
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.67 E-value=1.3e+02 Score=32.04 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=64.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 013334 142 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS- 220 (445)
Q Consensus 142 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~- 220 (445)
.++..++....+..++++...++++....+.....+......-.+|+..+..-.-+ +...+..+.++...+...++
T Consensus 106 i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~---~Ge~~~~lEk~Le~i~~~l~q 182 (570)
T COG4477 106 IDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQ---YGEAAPELEKKLENIEEELSQ 182 (570)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHHHHHHHHHHHH
Confidence 33334444555666666666666665544444444444444444554444433222 22333333444444444333
Q ss_pred -----------hhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 013334 221 -----------QTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAE 265 (445)
Q Consensus 221 -----------~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e 265 (445)
++..-+.+.......|++++-+-|.=+...=.+.=.++++|++.-
T Consensus 183 f~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gy 238 (570)
T COG4477 183 FVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGY 238 (570)
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 233345566777888888888888766655455555556666543
No 224
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.48 E-value=88 Score=30.00 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 013334 210 EKTGALDEKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 210 ~e~~~l~~~l~~~~~~l~~l~qe 232 (445)
.++..|..++..+...+..+..+
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333
No 225
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.59 E-value=83 Score=34.00 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhH
Q 013334 313 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDL 380 (445)
Q Consensus 313 ~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~ 380 (445)
.+.|+..+......+..|..++..+..++. .+.....+-..+..+++.|++++.+-+..++...+.+
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333333334444444443333 1111222333344455555555544444444433333
No 226
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=72.27 E-value=66 Score=28.02 Aligned_cols=80 Identities=28% Similarity=0.390 Sum_probs=51.7
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334 173 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLE 252 (445)
Q Consensus 173 ~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~ 252 (445)
.-|.++.+......+......+-+.-.++...+..++.+.......+..+........++...+ .-.-||+-|...|.
T Consensus 25 ~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l--~~~~s~~~l~~~L~ 102 (150)
T PF07200_consen 25 SLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL--SSNYSPDALLARLQ 102 (150)
T ss_dssp GGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHH
Confidence 3455666666666666666666666666667777777777777777777777777777776666 33557888887765
Q ss_pred HH
Q 013334 253 EK 254 (445)
Q Consensus 253 e~ 254 (445)
.-
T Consensus 103 ~~ 104 (150)
T PF07200_consen 103 AA 104 (150)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 227
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=72.18 E-value=1.2e+02 Score=31.05 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHhHHHHHHHHHHHHHHH
Q 013334 142 LTRLDEQRSELEDKISQLNAEIAAYNEVRER---ELPLVQEVDAKVKELRQTIQDL 194 (445)
Q Consensus 142 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~---~~~~~~el~~e~~~L~~~L~~l 194 (445)
-+.+..+...|+.++++|..+++..+..... +...-..+......|+..|..+
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 3344444555555566555555554332111 1111223455666666666666
No 228
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=72.03 E-value=1.4e+02 Score=31.77 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL---VQSVQQNADLRSKIVQSPEKLQRTLEEKK 255 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l---~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k 255 (445)
.++++...|+..|......-. .=++++...+.+.+..+|+.+=..+ +.....++.+.|-+-.--++++...+.++
T Consensus 252 ~id~~~~~L~~~l~~~~~~l~--~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~ 329 (570)
T COG4477 252 NIDSRLERLKEQLVENSELLT--QLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLK 329 (570)
T ss_pred cHHHHHHHHHHHHHHHHhHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 466777778777774433322 2345566666666666665443332 23456666666666666666677667777
Q ss_pred HHHHHHHHHHH
Q 013334 256 SIREEARDAEK 266 (445)
Q Consensus 256 ~~~~~l~~~e~ 266 (445)
..++.++..-+
T Consensus 330 ~Eie~V~~sY~ 340 (570)
T COG4477 330 EEIERVKESYR 340 (570)
T ss_pred HHHHHHHHHhc
Confidence 66666665543
No 229
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.90 E-value=1.5e+02 Score=31.98 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHHHH-HHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHh----hhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 013334 83 KLYSMV-KEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKD----TKMNLLRPIAEDLTRLDEQRSELEDKIS 157 (445)
Q Consensus 83 ~~~~~~-~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre----~~~~~~~~~~~e~~~l~~~~~~l~~~i~ 157 (445)
...+.+ ..|+..-|-+ +. .-|++|+..| .+|-++.+-.-... .....|..+..+...+.....+...+++
T Consensus 114 ~~L~~l~~~Li~IHGQh-~~--q~Ll~~~~~r--~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d 188 (557)
T COG0497 114 AQLKELGQLLIDIHGQH-EH--QSLLKPELQR--QLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRAD 188 (557)
T ss_pred HHHHHHHHhhheeeccc-hH--HHhcChHHHH--HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 3444444655 32 3466777766 67777665433331 1334555566666666666666666777
Q ss_pred HHHHHHHHHH
Q 013334 158 QLNAEIAAYN 167 (445)
Q Consensus 158 ~l~~~~~~~~ 167 (445)
-|+-+++++.
T Consensus 189 ~L~fq~~Ele 198 (557)
T COG0497 189 LLQFQLEELE 198 (557)
T ss_pred HHHHHHHHHH
Confidence 7777766663
No 230
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=71.61 E-value=52 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
+..++..+..+...+...+..+..++.++..
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~ 33 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELEL 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666555555544
No 231
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=70.66 E-value=58 Score=30.82 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN 233 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~ 233 (445)
+++.++++|..+-..|......|+...+.+-.+..++...++.+..++.++++.+
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444444444444445555555555555555555555555555555443
No 232
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=70.62 E-value=59 Score=26.75 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH-HHHHHHHH
Q 013334 200 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR-EEARDAEK 266 (445)
Q Consensus 200 ~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~-~~l~~~e~ 266 (445)
.|...+..++.....+...+..++.....+.......+..|...-+.|...|++.+..+ .++.....
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~ 71 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKE 71 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777777777777777888888888888999999999999998887754 55555443
No 233
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.61 E-value=68 Score=27.49 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHH
Q 013334 230 VQQNADLRSKIVQSPEKLQRTLEEKK 255 (445)
Q Consensus 230 ~qe~~~L~~~Iv~SPe~lk~~l~e~k 255 (445)
..++..+...+...-..+.....+++
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~ 34 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLE 34 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334433
No 234
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=70.55 E-value=4.4 Score=32.84 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHHHHcCCCCC-CCccccc-CCCcchHHHHHHHHHHHH
Q 013334 90 EVVTTVNCPMN-FTLKDLI-RPDATRTEYFLSAILNFC 125 (445)
Q Consensus 90 ~~l~~~gv~~D-Ft~~DL~-~P~~~R~~~iLSalINF~ 125 (445)
++++.+||+.. |+..||+ +|+.+.+..+|++|.++.
T Consensus 69 ~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 69 NFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 44455899845 9999999 999999999999998763
No 235
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.14 E-value=1.4e+02 Score=30.80 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHhh---hhcCHHHHHHHHHHHH
Q 013334 220 SQTEFDLVQSVQQNADLRSK---IVQSPEKLQRTLEEKK 255 (445)
Q Consensus 220 ~~~~~~l~~l~qe~~~L~~~---Iv~SPe~lk~~l~e~k 255 (445)
-.++..-...-+++..|+.+ +...|.-|...+.+|.
T Consensus 86 ~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r 124 (459)
T KOG0288|consen 86 LIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMR 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH
Confidence 33333333444444444433 4444555554444443
No 236
>PHA03011 hypothetical protein; Provisional
Probab=70.08 E-value=39 Score=27.48 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
.+..++...+.+|.-+...|..++..+..+...+..-+.+....+..++.++++|+..|.
T Consensus 57 GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 57 GDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 344455555555555666667777777788888888888888888888888888887765
No 237
>PF14992 TMCO5: TMCO5 family
Probab=69.97 E-value=1.1e+02 Score=29.80 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q 013334 196 KHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 257 (445)
Q Consensus 196 ~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~ 257 (445)
..++.+..+..++.+..+.+..+|...+..+.++..|+.+... +++-+|+.-...++....
T Consensus 4 sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~-~~~~~e~e~~~~~~~e~~ 64 (280)
T PF14992_consen 4 SLNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDH-IADRSEEEDIISEERETD 64 (280)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCchhHHhhhhhchHHH
Confidence 3455667777788888888899999888888888888887753 344445555444444333
No 238
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.52 E-value=77 Score=29.74 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=7.5
Q ss_pred CCCCCCHHHHHHHHhh
Q 013334 5 DYPRLSATEIVTILTE 20 (445)
Q Consensus 5 ~FP~l~~~EIv~~L~~ 20 (445)
.+|. |+..-...+..
T Consensus 20 ~Lpi-p~r~~~~~~~~ 34 (216)
T KOG1962|consen 20 LLPI-PPRRRRKIFKD 34 (216)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 3555 55555544443
No 239
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.96 E-value=28 Score=31.18 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHH
Q 013334 184 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS--QTEFDLVQSVQQNADLR 237 (445)
Q Consensus 184 ~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~--~~~~~l~~l~qe~~~L~ 237 (445)
...+..++..|..+-..+......+..+...+...+. ++...+.++.+++..|.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555442 33333333444433333
No 240
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.85 E-value=1.3e+02 Score=29.96 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=10.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHH
Q 013334 175 PLVQEVDAKVKELRQTIQDLNK 196 (445)
Q Consensus 175 ~~~~el~~e~~~L~~~L~~l~~ 196 (445)
..+.+|+..|+.++.+.....+
T Consensus 78 ~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 78 SLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444433
No 241
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.82 E-value=1e+02 Score=28.75 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=9.0
Q ss_pred HHhhHhhhhhhhHHHHHHHH
Q 013334 124 FCLYKDTKMNLLRPIAEDLT 143 (445)
Q Consensus 124 F~rFre~~~~~~~~~~~e~~ 143 (445)
|-||..--...+..+++..+
T Consensus 3 f~Rl~~~~~a~~~~~ld~~E 22 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAE 22 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444443
No 242
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=68.63 E-value=2e+02 Score=32.08 Aligned_cols=40 Identities=28% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 013334 337 RQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKR 377 (445)
Q Consensus 337 ~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~ 377 (445)
.+.+++.|+++.+++-+..-. .-++..+++.|+.+++...
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Evaka~ 686 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIR-SSDLKSKIELLKLEVAKAS 686 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHhcC
Confidence 366777777777665544443 4457777777777775544
No 243
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.63 E-value=1.1e+02 Score=29.33 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334 201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 254 (445)
Q Consensus 201 l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~ 254 (445)
|..+.+.+..+.+........+......+.+....|...|...-..+...++++
T Consensus 57 L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 57 LEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555554444444444444
No 244
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=68.40 E-value=1.4e+02 Score=30.06 Aligned_cols=11 Identities=9% Similarity=0.296 Sum_probs=6.5
Q ss_pred HcCCCCCCCccc
Q 013334 94 TVNCPMNFTLKD 105 (445)
Q Consensus 94 ~~gv~~DFt~~D 105 (445)
.-||+ ||+--.
T Consensus 6 eqgvn-d~Sk~E 16 (561)
T KOG1103|consen 6 EQGVN-DFSKDE 16 (561)
T ss_pred hcccc-ccchHH
Confidence 35777 776443
No 245
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.03 E-value=99 Score=28.36 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=15.6
Q ss_pred hHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhh
Q 013334 400 KTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 433 (445)
Q Consensus 400 ~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~ 433 (445)
+.......--..+..+..+-..+..+++.|.+++
T Consensus 125 el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 125 ELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333333333444445555555555555554444
No 246
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.96 E-value=2.3e+02 Score=32.60 Aligned_cols=36 Identities=39% Similarity=0.420 Sum_probs=15.8
Q ss_pred HHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 013334 396 AITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 434 (445)
Q Consensus 396 ~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~ 434 (445)
.+..++.++++.-... +......|-..|-..+.+|+
T Consensus 888 ~i~~kl~~~ke~w~~~---le~~V~~In~~Fs~~F~~mg 923 (1072)
T KOG0979|consen 888 RIKDKLSDVKEVWLPK---LEEMVEQINERFSQLFSSMG 923 (1072)
T ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHhhcc
Confidence 3333444554444333 33333444444445555554
No 247
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=67.93 E-value=98 Score=28.27 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013334 410 AKLQELASKAEEIVEKFQQY 429 (445)
Q Consensus 410 ~ei~~i~~~y~~l~~~~~~Y 429 (445)
.++..+..-|..|.++++.=
T Consensus 148 r~v~~lRr~f~elr~~Terd 167 (182)
T PF15035_consen 148 REVVALRRQFAELRTATERD 167 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444433
No 248
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.47 E-value=61 Score=25.36 Aligned_cols=46 Identities=7% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHH
Q 013334 374 ESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKA 419 (445)
Q Consensus 374 e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y 419 (445)
..--+.+.....+...+...|-.++..-..+|..|+.||..+..+-
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566667777888888899999999999999999887653
No 249
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=66.39 E-value=38 Score=30.15 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCC--CCCChhhhCCCChhHHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHH
Q 013334 12 TEIVTILTETEI--AVITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVK 89 (445)
Q Consensus 12 ~EIv~~L~~~~i--~~~t~~dl~~Pt~~~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~ 89 (445)
..|..+|...|+ ..++...|..||.-....||..++.+++-.. .+. . -+++-+ -
T Consensus 43 ~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL~~~idp~~-------~~~-----~---k~eeev---------~ 98 (157)
T PF03801_consen 43 RKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFLFRQIDPNF-------KFG-----K---KFEEEV---------P 98 (157)
T ss_dssp HHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHHHHTTSTT----------S-----S---THHHHH---------H
T ss_pred HHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHHHHHhCCCC-------CcC-----c---CHHHHH---------H
Confidence 467778888777 2589999999999988888888876664321 110 0 122212 2
Q ss_pred HHHHHcCCCC-CCCcccccCCCcch----HHHHHHHHHHHHhhHhhhhh
Q 013334 90 EVVTTVNCPM-NFTLKDLIRPDATR----TEYFLSAILNFCLYKDTKMN 133 (445)
Q Consensus 90 ~~l~~~gv~~-DFt~~DL~~P~~~R----~~~iLSalINF~rFre~~~~ 133 (445)
.+|+.+|+|- .++=+-|..|.+.. +.-+|+-||..+.|.+.-..
T Consensus 99 ~~lK~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~l~~~~~~~~~ 147 (157)
T PF03801_consen 99 FLLKALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVELIKYEEELDS 147 (157)
T ss_dssp HHHHHTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCccccCHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677788862 23445667775555 66777778888888887654
No 250
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.17 E-value=56 Score=24.83 Aligned_cols=55 Identities=25% Similarity=0.273 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 328 KSLEAKLIERQGKVEQLDELQQQLEKERNL---KSEDATRAFENVKLEMESKRQDLEA 382 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~~eel~~~~~~lkee~e~~~~~~e~ 382 (445)
..|+.+++.+..++.......+.+..+|+. .+...-..+..|+++++...++++.
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777766 4444445556666666665555443
No 251
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.15 E-value=50 Score=27.00 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013334 181 DAKVKELRQTIQDLNKHQVSLR 202 (445)
Q Consensus 181 ~~e~~~L~~~L~~l~~~q~~l~ 202 (445)
..+...+..++..++..+..+.
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444433333
No 252
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.77 E-value=1.5e+02 Score=29.53 Aligned_cols=12 Identities=8% Similarity=0.302 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 013334 181 DAKVKELRQTIQ 192 (445)
Q Consensus 181 ~~e~~~L~~~L~ 192 (445)
..+...+..++.
T Consensus 56 ~kek~~l~~E~~ 67 (309)
T PF09728_consen 56 QKEKDQLQSELS 67 (309)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 253
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=65.68 E-value=91 Score=30.20 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=27.4
Q ss_pred ccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013334 106 LIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAE 162 (445)
Q Consensus 106 L~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~ 162 (445)
.+.|-..-+..+++.+.+.+.+--.....+-.....+..+.++.+.|++++.+|+.+
T Consensus 35 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 35 SLSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESR 91 (276)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555566555555544444433334444444444444455444444443
No 254
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.60 E-value=2.6e+02 Score=32.25 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=14.4
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 013334 401 TKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 434 (445)
Q Consensus 401 ~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~ 434 (445)
.+..+.+.-.........-..|+..|+.=...+.
T Consensus 886 le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F 919 (1072)
T KOG0979|consen 886 LERIKDKLSDVKEVWLPKLEEMVEQINERFSQLF 919 (1072)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444555555544333333
No 255
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=64.99 E-value=2.3e+02 Score=31.43 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=33.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013334 355 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 398 (445)
Q Consensus 355 ~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le 398 (445)
.-...+-+.++.+.++..++...++.+.....++.+.++++.++
T Consensus 214 Ale~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 214 ALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33355667777888888888888888888888888888888776
No 256
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.89 E-value=1e+02 Score=32.49 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
+..++.++...|..+...|.++..+.+++..+.++.... +.+.+.++.+|++.
T Consensus 252 ~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~-------~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 252 LRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQM-------LHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccC
Confidence 344555666666666666666555555555555444444 44445555566543
No 257
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.78 E-value=62 Score=24.87 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 013334 154 DKISQLNAEIAAY 166 (445)
Q Consensus 154 ~~i~~l~~~~~~~ 166 (445)
+.|++|..+-+.+
T Consensus 12 e~Ia~L~eEGekL 24 (74)
T PF12329_consen 12 EQIAQLMEEGEKL 24 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 258
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=64.22 E-value=7.6 Score=31.37 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHH-cCCCCCCCccccc-CCCcchHHHHHHHHHHHH
Q 013334 90 EVVTT-VNCPMNFTLKDLI-RPDATRTEYFLSAILNFC 125 (445)
Q Consensus 90 ~~l~~-~gv~~DFt~~DL~-~P~~~R~~~iLSalINF~ 125 (445)
+++.. +|++..++..||+ .|+++.+..+|++|.++.
T Consensus 70 ~~~~~~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~ 107 (108)
T PF00307_consen 70 EAAEKKLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYF 107 (108)
T ss_dssp HHHHHHTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46666 9998789999999 999999999999998874
No 259
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=64.14 E-value=2.2e+02 Score=30.94 Aligned_cols=49 Identities=10% Similarity=0.214 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 334 LIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA 382 (445)
Q Consensus 334 l~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~ 382 (445)
+..+-.-+++++..+....+.....+..++++.....++++.....+..
T Consensus 294 i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 294 IAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555566666655555555556666666665555555555555444
No 260
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.97 E-value=1.6e+02 Score=29.38 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 013334 358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTK 402 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~ 402 (445)
.+.++..--.+|-+.+..+.=.+...++-+..+-..|.++|....
T Consensus 273 s~sdLksl~~aLle~indK~~al~Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 273 SISDLKSLATALLETINDKNLALQHQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777877777777777777777778887776654
No 261
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=63.63 E-value=1.2e+02 Score=27.94 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH-HHHHHHH
Q 013334 209 KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR-EEARDAE 265 (445)
Q Consensus 209 k~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~-~~l~~~e 265 (445)
..+--+|.++|..-+..+..+.+.+..=...+-.-|..++.-=..|+..+ .+|+++.
T Consensus 4 t~eY~~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsK 61 (196)
T PF15272_consen 4 TSEYLELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSK 61 (196)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777776666666666777776666665543 5555544
No 262
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.62 E-value=1.4e+02 Score=28.60 Aligned_cols=50 Identities=32% Similarity=0.385 Sum_probs=22.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013334 218 KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEK 275 (445)
Q Consensus 218 ~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k 275 (445)
.++.++-.+..+..-++.|+.|| +.|+.....++-.+.+-.-++..|..+
T Consensus 92 q~s~Leddlsqt~aikeql~kyi--------ReLEQaNDdLErakRati~sleDfeqr 141 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYI--------RELEQANDDLERAKRATIYSLEDFEQR 141 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence 44444444555555555555444 333433334433333333345555443
No 263
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.47 E-value=1e+02 Score=32.31 Aligned_cols=7 Identities=0% Similarity=0.150 Sum_probs=4.2
Q ss_pred HHHcCCC
Q 013334 92 VTTVNCP 98 (445)
Q Consensus 92 l~~~gv~ 98 (445)
++.+|+.
T Consensus 47 ~kalGie 53 (472)
T TIGR03752 47 LKALGIE 53 (472)
T ss_pred hHhcCCC
Confidence 3566765
No 264
>PLN03188 kinesin-12 family protein; Provisional
Probab=63.29 E-value=2.8e+02 Score=32.92 Aligned_cols=119 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334 132 MNLLRPIAEDLTRLDEQRSELEDKISQ--------------------LNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 191 (445)
Q Consensus 132 ~~~~~~~~~e~~~l~~~~~~l~~~i~~--------------------l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L 191 (445)
...|.++.+.+.+|.+++..+++-|+. |-++|..++..++.+ ..-+..+|+.|+.+|
T Consensus 1113 ~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereke---r~~~~~enk~l~~ql 1189 (1320)
T PLN03188 1113 LEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKE---RRYLRDENKSLQAQL 1189 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHH
Q ss_pred HHHHH-HHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 013334 192 QDLNK-HQV--SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 253 (445)
Q Consensus 192 ~~l~~-~q~--~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e 253 (445)
...-. .|. .|-.++.+..+-..-...+-..++.+-.++.+++++|+.+=-.-..-|+..+.+
T Consensus 1190 rdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1190 RDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 265
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.20 E-value=86 Score=25.92 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=18.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 135 ~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
+......+..+..+...+...+..+..++.++..
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555433
No 266
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=62.96 E-value=1.9e+02 Score=29.83 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFEN 368 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~ 368 (445)
....-++-++..+++++..+.+-++....++.....+-..
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566677788888877776555555555544444333
No 267
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=62.29 E-value=46 Score=28.96 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=14.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK 218 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~ 218 (445)
.+.++..+...|..++..+-..++.++..--.+..+-..|..+
T Consensus 73 rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~ 115 (141)
T PF13874_consen 73 RLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKR 115 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444455555555555555544444444333333333333333
No 268
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.75 E-value=3.1e+02 Score=31.86 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=12.7
Q ss_pred cCCCcchHHHHHHHH
Q 013334 107 IRPDATRTEYFLSAI 121 (445)
Q Consensus 107 ~~P~~~R~~~iLSal 121 (445)
+.|++.-+-..||.|
T Consensus 367 iSPa~~~lEETlSTL 381 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTL 381 (1041)
T ss_pred eCCCcccHHHHHHHH
Confidence 479999999999986
No 269
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=61.59 E-value=1.9e+02 Score=29.50 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhHHHHHHhcHHHHHH
Q 013334 390 VVTEVDAITSKTKFVKESGAAKLQE 414 (445)
Q Consensus 390 ~~~~v~~le~~~~~~~~~~e~ei~~ 414 (445)
++...+-++...+.+..-|+..+.-
T Consensus 264 lEt~q~~leqeva~le~yyQ~y~~l 288 (499)
T COG4372 264 LETAQARLEQEVAQLEAYYQAYVRL 288 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 270
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=61.46 E-value=1.8e+02 Score=28.93 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 013334 150 SELEDKISQLNA 161 (445)
Q Consensus 150 ~~l~~~i~~l~~ 161 (445)
+...--+++|.+
T Consensus 94 rkAMv~naQLDN 105 (302)
T PF09738_consen 94 RKAMVSNAQLDN 105 (302)
T ss_pred HHHHHHHhhhch
Confidence 333333333333
No 271
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=61.39 E-value=2.6e+02 Score=30.89 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=41.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh-hcCH
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI-VQSP 244 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I-v~SP 244 (445)
+..+......|+..|..+.........++.....+.+.|...++.....+..-..-+..|+.|| -+-|
T Consensus 164 l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p 232 (739)
T PF07111_consen 164 LASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVP 232 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCC
Confidence 3344455555555555555444444555666666677777777777777776666777788777 4444
No 272
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=61.05 E-value=1.6e+02 Score=30.82 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHH
Q 013334 296 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ-----QLEKERNLKSEDATRAFENVK 370 (445)
Q Consensus 296 l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~-----~~~~e~~~~~eel~~~~~~lk 370 (445)
+..-++.+|.+ ......+++..-.......+.++...+..+...+.... .-.......+..++.++..++
T Consensus 225 L~~sE~~VN~L-----s~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ 299 (434)
T PRK15178 225 LSFAEQHVNTV-----SARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAK 299 (434)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHH-----HHHHHHHHHHHHH
Q 013334 371 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAA-----KLQELASKAEEIV 423 (445)
Q Consensus 371 ee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~-----ei~~i~~~y~~l~ 423 (445)
.++......+...--.+..+...+..|+.+|+..+...-. -......+|..|.
T Consensus 300 aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~ 357 (434)
T PRK15178 300 AEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLR 357 (434)
T ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
No 273
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=61.02 E-value=56 Score=30.88 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 013334 181 DAKVKELRQTIQDLNK 196 (445)
Q Consensus 181 ~~e~~~L~~~L~~l~~ 196 (445)
..+...+.++|.+++.
T Consensus 131 ~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 131 DSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 3333333344444433
No 274
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.10 E-value=1.7e+02 Score=28.46 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 359 SEDATRAFENVKLEMESKRQDLEA 382 (445)
Q Consensus 359 ~eel~~~~~~lkee~e~~~~~~e~ 382 (445)
+.+.+++|..|++-++.+...+..
T Consensus 119 LKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhch
Confidence 444555555555555555444433
No 275
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.78 E-value=57 Score=34.82 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013334 178 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 178 ~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe 232 (445)
.+++.+.++|.++|.++|..++++...+..-+.+...++..|++.+-...++.+.
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3455566666777777777766666666666666666666666666665555443
No 276
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=59.47 E-value=1.8e+02 Score=28.33 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 209 KEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 209 k~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
+.+..++.+++.+++..-..+...+..++
T Consensus 227 ~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 227 KERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433333333333333
No 277
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.39 E-value=1.2e+02 Score=31.92 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 141 DLTRLDEQRSELEDKISQLNAEIA 164 (445)
Q Consensus 141 e~~~l~~~~~~l~~~i~~l~~~~~ 164 (445)
-+-++..+.++++.+++.+..++.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~ 83 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENE 83 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444433
No 278
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.26 E-value=1.5e+02 Score=27.51 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
-++..|+.+.++.+.++..--.+|-.+
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~L 36 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSL 36 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346667777777777666544444444
No 279
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.58 E-value=87 Score=24.50 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=25.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
+..--.++..++..+.+|...+..+...| .+++..|..+|+.
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 33334666777777777777766665554 4555555555544
No 280
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.41 E-value=78 Score=26.28 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAE 162 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~ 162 (445)
+.+.+..+.++...+-+++..|+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~ 30 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQ 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 281
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.81 E-value=1e+02 Score=25.13 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=11.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
..+..+..+...+...+..+...+.++
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~ 32 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 282
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.75 E-value=1.2e+02 Score=32.90 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhHHHHHHhcHHHHHHHHHHHH
Q 013334 390 VVTEVDAITSKTKFVKESGAAKLQELASKAE 420 (445)
Q Consensus 390 ~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~ 420 (445)
++...+.+..+..+++..-+..++.+...|.
T Consensus 242 l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 242 LQNDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHhHHHHHHHHHHHHhccHhHHHHHHHHhC
Confidence 3444455555555666666666666665553
No 283
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=57.69 E-value=3e+02 Score=30.43 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013334 328 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEAR 383 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~ 383 (445)
...+.=|.-|..|+=.|-=+++....++...+..+..+.+.|.+++....++-...
T Consensus 302 ~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiL 357 (739)
T PF07111_consen 302 RKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAIL 357 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888777777777777777766667777777666666655544443
No 284
>PHA03011 hypothetical protein; Provisional
Probab=57.32 E-value=88 Score=25.50 Aligned_cols=30 Identities=33% Similarity=0.327 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 137 PIAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 137 ~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
.+.+..+.+..+...+-++..-+..++.++
T Consensus 61 ai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~ 90 (120)
T PHA03011 61 AIIEILDELIAQYNELLDEYNLIENEIKDL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 285
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.11 E-value=51 Score=25.02 Aligned_cols=41 Identities=10% Similarity=0.276 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHH
Q 013334 206 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT 250 (445)
Q Consensus 206 ~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~ 250 (445)
..++.+.+.+..+++++..+...+..+++.|+ .||+.+...
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~----~~~~~ie~~ 60 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK----NDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 33444444455555555555555555555553 277776544
No 286
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.03 E-value=66 Score=22.86 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=7.7
Q ss_pred HhHHHHHHHHHHHHHHH
Q 013334 178 QEVDAKVKELRQTIQDL 194 (445)
Q Consensus 178 ~el~~e~~~L~~~L~~l 194 (445)
..|..+|..|..++..|
T Consensus 35 ~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 35 QELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 287
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.91 E-value=1e+02 Score=29.76 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=43.3
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHhhhhHHHHHH
Q 013334 315 SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRA---FENVKLEMESKRQDLEARQK 385 (445)
Q Consensus 315 ~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~---~~~lkee~e~~~~~~e~~~~ 385 (445)
.++++|+.-...-..|..|+......++++++.+..+..-|=..|.+.+.- +..+-+-|-...+-+.-...
T Consensus 123 ~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~ 196 (338)
T KOG3647|consen 123 SSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKS 196 (338)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 335555544444466778888888888888888888888777766554443 33333344444444444333
No 288
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.84 E-value=2e+02 Score=28.03 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLEKERNL 357 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~~e~~~ 357 (445)
.|++-+.....+++.-+.....+..++..
T Consensus 43 SlEAaLqKQKqK~e~ek~e~s~LkREnq~ 71 (307)
T PF10481_consen 43 SLEAALQKQKQKVEEEKNEYSALKRENQS 71 (307)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 44555555555555554444444444443
No 289
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=56.67 E-value=1.8e+02 Score=27.54 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=7.5
Q ss_pred chHHHHHHHHHHHH
Q 013334 112 TRTEYFLSAILNFC 125 (445)
Q Consensus 112 ~R~~~iLSalINF~ 125 (445)
+|+.++++|.||=+
T Consensus 5 ~r~~~~~~a~~~~~ 18 (225)
T COG1842 5 SRLKDLVKANINEL 18 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555566555533
No 290
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.55 E-value=1.5e+02 Score=29.69 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 219 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l 219 (445)
+++.++...+.+.++.+.|..-...+..-+.+..++...+
T Consensus 16 Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sL 55 (330)
T PF07851_consen 16 LQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSL 55 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444444443333333
No 291
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=56.47 E-value=1.7e+02 Score=27.18 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCC-CCCCcccccCCCcchHHHHHHHHHHHHhhHhh-hhhhhHHHHHHHH
Q 013334 86 SMVKEVVTTVNCP-MNFTLKDLIRPDATRTEYFLSAILNFCLYKDT-KMNLLRPIAEDLT 143 (445)
Q Consensus 86 ~~~~~~l~~~gv~-~DFt~~DL~~P~~~R~~~iLSalINF~rFre~-~~~~~~~~~~e~~ 143 (445)
-.+.-|+..|..+ ......-+.+|-..-.-.++--+|||+-|-=- ..-.|.|+..-++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~ 78 (205)
T PRK06231 19 LIISLFLVSCTENVEELKSKSIINELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLN 78 (205)
T ss_pred HHHHHHHHHccCChhhcCHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666667542 14444444333323334677888898887433 4456677655443
No 292
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=56.01 E-value=32 Score=33.58 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=39.3
Q ss_pred cCCCcchHHHHHHHHH----HHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 107 IRPDATRTEYFLSAIL----NFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 167 (445)
Q Consensus 107 ~~P~~~R~~~iLSalI----NF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~ 167 (445)
.+|...|+++.=-..+ -=+|||.-|....+.+..+...|..+..+|+++...+.++|+-++
T Consensus 218 ~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 218 AHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544332222 246888888888888888887777777777776666666665553
No 293
>PRK11020 hypothetical protein; Provisional
Probab=55.37 E-value=1e+02 Score=25.72 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHH
Q 013334 148 QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 199 (445)
Q Consensus 148 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~ 199 (445)
+.+.+-++++.++........ .-+.+.+.+...+...|..+|..++.+|.
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~--rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASL--RGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333211 12445777888888888888888877665
No 294
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=54.79 E-value=95 Score=25.94 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=12.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAEIA 164 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~~~ 164 (445)
+++.+..+.++...+-+.+..|+..+.
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~ 32 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLA 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 295
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=54.30 E-value=2.9e+02 Score=29.30 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
....++..|.+.|..+.+.-..++.+.+.++.=.....+.-.+++.+..++...-.......-.+-+.||
T Consensus 230 ~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 230 RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666555555555555555555554445555555544444444444444444443
No 296
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.68 E-value=1.4e+02 Score=25.51 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
....+++..++...++...+.+..+..-+..|..+|
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443
No 297
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.66 E-value=2.9e+02 Score=29.07 Aligned_cols=63 Identities=10% Similarity=0.231 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 179 EVDAKVKELRQTIQDLNKHQVS-LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~-l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
+++.+....+..|..+...... +......+..+...+..++..++.++..+......|+.++.
T Consensus 172 ~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 172 TYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555544322110 11112233445555555666666666666666666666544
No 298
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.00 E-value=84 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.430 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 212 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~ 212 (445)
+++.++..+...+..++++...++...+.+++..
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 299
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.45 E-value=4.5e+02 Score=30.83 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHh
Q 013334 91 VVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKD 129 (445)
Q Consensus 91 ~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre 129 (445)
|...+.++ --.|.++++.+|+--+.+|..+.+--.|..
T Consensus 143 F~~~~~l~-Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~ 180 (1042)
T TIGR00618 143 FTRVVLLP-QGEFAQFLKAKSKEKKELLMNLFPLDQYTQ 180 (1042)
T ss_pred Hhhheeec-ccchHHHHhCCHHHHHHHHHHHhCcHHHHH
Confidence 33334343 334566666667766777777777666643
No 300
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.21 E-value=3.8e+02 Score=30.02 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=47.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC---HHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS---PEKLQRTLE 252 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~S---Pe~lk~~l~ 252 (445)
.++-|+.||..|+.+|.-||.+- ++ .++.+-...-.+..+++..|..-+--|+.++.+| -|-|+...+
T Consensus 388 A~QplrsENaqLrRrLrilnqql---re------qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQL---RE------QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHH---HH------HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 35677888888888888777652 22 2333333444566788888888777777776544 344455555
Q ss_pred HHHHHHHHHH
Q 013334 253 EKKSIREEAR 262 (445)
Q Consensus 253 e~k~~~~~l~ 262 (445)
+|-..++..+
T Consensus 459 ellk~~e~q~ 468 (861)
T PF15254_consen 459 ELLKVIENQK 468 (861)
T ss_pred HHHHHHHHHH
Confidence 5555443333
No 301
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.04 E-value=4e+02 Score=30.19 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=27.8
Q ss_pred hHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 177 VQEVDAKVKELRQTIQDLN-KHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~-~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
+.++..+..+++.+....- +....|...+............-+..+++.+.
T Consensus 229 ~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a 280 (782)
T PRK00409 229 VVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFA 280 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666665554332 23335555555555555555556665555444
No 302
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=51.63 E-value=4.9e+02 Score=31.09 Aligned_cols=18 Identities=0% Similarity=0.016 Sum_probs=9.1
Q ss_pred HHHhcHHHHHHHHHHHHH
Q 013334 404 VKESGAAKLQELASKAEE 421 (445)
Q Consensus 404 ~~~~~e~ei~~i~~~y~~ 421 (445)
.......+|+.|-.++|+
T Consensus 1121 fHs~KMeeiN~iI~elW~ 1138 (1294)
T KOG0962|consen 1121 FHSMKMEEINRIIRELWR 1138 (1294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555554
No 303
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=51.29 E-value=2.7e+02 Score=28.03 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 284 KTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLND--DVVLDKSLEAKLIERQGKVEQLDELQQQ 350 (445)
Q Consensus 284 k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~--~~~~~~~L~~kl~e~q~k~e~l~e~~~~ 350 (445)
+.++++++..+.++.+.......+....++...+.-|.+ ...+...++..+.+++.++..|++.++-
T Consensus 33 ~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 33 DEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888888888888877774 3444456677777788888888777764
No 304
>PRK11546 zraP zinc resistance protein; Provisional
Probab=51.26 E-value=1.1e+02 Score=26.73 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHH
Q 013334 386 KVEAVVTEVDAITSKTKFVKESGAAKLQE 414 (445)
Q Consensus 386 ~~e~~~~~v~~le~~~~~~~~~~e~ei~~ 414 (445)
.+..+.+++..|..++.+.+.++..++.+
T Consensus 90 kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 90 KINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666554
No 305
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.77 E-value=1.3e+02 Score=32.06 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 203 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 203 ~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
.++.++..+..++..++.++..++..++.+...|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444444444444444443
No 306
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.74 E-value=60 Score=34.08 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013334 333 KLIERQGKVEQLDELQQQL 351 (445)
Q Consensus 333 kl~e~q~k~e~l~e~~~~~ 351 (445)
++.+.|.+..+|++++..+
T Consensus 70 ALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 307
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.61 E-value=1.3e+02 Score=26.58 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=13.8
Q ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 013334 316 LKARLNDDVVLDKSLEAKLIERQGKVEQLD 345 (445)
Q Consensus 316 lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~ 345 (445)
.+.++.........+..++..+...+..|+
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk 47 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLK 47 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555444444444444444444444443
No 308
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=50.50 E-value=3.2e+02 Score=28.55 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013334 182 AKVKELRQTIQDLNKHQV 199 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~ 199 (445)
.+++.|+.+|.-|.+.+.
T Consensus 151 ~Ev~~LRreLavLRQl~~ 168 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYS 168 (424)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655444
No 309
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=50.47 E-value=14 Score=24.87 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHhhcCC
Q 013334 5 DYPRLSATEIVTILTETEI 23 (445)
Q Consensus 5 ~FP~l~~~EIv~~L~~~~i 23 (445)
-||.+++..|..||..++-
T Consensus 11 mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 11 MFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HSSSS-HHHHHHHHHHTTT
T ss_pred HCCCCCHHHHHHHHHHcCC
Confidence 4999999999999988764
No 310
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=50.43 E-value=95 Score=24.37 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 186 ELRQTIQDLNKHQVSLRTTLNKLKEKT 212 (445)
Q Consensus 186 ~L~~~L~~l~~~q~~l~~~~~~lk~e~ 212 (445)
.|..++..|+..-..|..+++.++.+.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~ 46 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEEN 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 311
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.22 E-value=3.2e+02 Score=28.55 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhHHH-HHHhcHHHHHHHHHHHHHHHHHHHH
Q 013334 389 AVVTEVDAITSKTKF-VKESGAAKLQELASKAEEIVEKFQQ 428 (445)
Q Consensus 389 ~~~~~v~~le~~~~~-~~~~~e~ei~~i~~~y~~l~~~~~~ 428 (445)
.+..+|..++.+|.. ...++-.-...|+..|..|..+...
T Consensus 473 ~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~ 513 (521)
T KOG1937|consen 473 ALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQ 513 (521)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455555555544 3344555566666666666666543
No 312
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=50.06 E-value=11 Score=41.20 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=9.7
Q ss_pred HhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHh
Q 013334 398 TSKTKFVKESGAAKLQELASKAEEIVEKFQQY 429 (445)
Q Consensus 398 e~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y 429 (445)
....+++-+.|+.||..+...|..-..-++.|
T Consensus 318 d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v 349 (619)
T PF03999_consen 318 DSYTEELLELHEEEIERLKEEYESRKPILELV 349 (619)
T ss_dssp -----------------HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788888888888888877655555444
No 313
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.05 E-value=1e+02 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=8.9
Q ss_pred HhhHhhhhhhhHHHHHHHHhHH
Q 013334 125 CLYKDTKMNLLRPIAEDLTRLD 146 (445)
Q Consensus 125 ~rFre~~~~~~~~~~~e~~~l~ 146 (445)
.+||.=+...+..+...+..+.
T Consensus 18 r~~R~RKk~~~~~Le~~~~~L~ 39 (64)
T PF00170_consen 18 RRSRQRKKQYIEELEEKVEELE 39 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444443333333333
No 314
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.86 E-value=66 Score=22.25 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 013334 200 SLRTTLNKLKEKTGAL 215 (445)
Q Consensus 200 ~l~~~~~~lk~e~~~l 215 (445)
+|..+++.++.++..|
T Consensus 16 ~Lk~~~~~L~~E~~~L 31 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKL 31 (45)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444433333
No 315
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.48 E-value=1.5e+02 Score=24.55 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=25.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
.++.|++.+....+.+.+|+..-..+...++..|.-+-++..++..
T Consensus 45 ~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 45 ALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666655555555555555555455444443
No 316
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.40 E-value=2.9e+02 Score=27.78 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHhhHHHHHHhcHHHHHHHHHHHHHHHHH
Q 013334 397 ITSKTKFVKESGAAKLQELASKAEEIVEK 425 (445)
Q Consensus 397 le~~~~~~~~~~e~ei~~i~~~y~~l~~~ 425 (445)
|-+-..+-+..-...+..+......|.+.
T Consensus 285 Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 285 LISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 33344445555556666666666555443
No 317
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=48.85 E-value=2e+02 Score=25.71 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 288 KMSKQSAQMQAILEQVNSAKSIEKDY 313 (445)
Q Consensus 288 ~l~~~~~~l~~~~e~~~~~k~~e~~~ 313 (445)
++...+..-..++-++...++-++++
T Consensus 78 dik~AYe~A~~lQ~~L~~~re~E~qL 103 (159)
T PF05384_consen 78 DIKEAYEEAHELQVRLAMLREREKQL 103 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 318
>PLN02678 seryl-tRNA synthetase
Probab=48.63 E-value=1.8e+02 Score=30.66 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 139 AEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 139 ~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
++++-.+.+++.++..+++.|+.+.+.+
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~ 59 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKL 59 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566665555555544433
No 319
>PF13514 AAA_27: AAA domain
Probab=48.36 E-value=5.3e+02 Score=30.50 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh----hcCHHHHHHHHHHHHHH
Q 013334 197 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI----VQSPEKLQRTLEEKKSI 257 (445)
Q Consensus 197 ~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I----v~SPe~lk~~l~e~k~~ 257 (445)
....+...+..+..+.......+..+...+..........-..+ .-+|..+...++.+...
T Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l 738 (1111)
T PF13514_consen 674 RREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEEL 738 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555554444333222 13688777766555543
No 320
>PRK11281 hypothetical protein; Provisional
Probab=48.27 E-value=5.3e+02 Score=30.53 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=4.2
Q ss_pred cHHHHHHHH
Q 013334 408 GAAKLQELA 416 (445)
Q Consensus 408 ~e~ei~~i~ 416 (445)
...+|..+.
T Consensus 358 l~~~iAdlr 366 (1113)
T PRK11281 358 LADRIADLR 366 (1113)
T ss_pred HHHHHHHHH
Confidence 444444444
No 321
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.96 E-value=1.2e+02 Score=26.55 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=34.7
Q ss_pred hHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Q 013334 127 YKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 194 (445)
Q Consensus 127 Fre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l 194 (445)
.-.++...++.|.+++..- ...++.++-..+.+++.+-..-..+...+..+..|+..|.++|.++
T Consensus 44 LT~EQQa~~q~I~~~f~~~---t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQ---TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred CCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777666433 3455555554454444443333333334556666666666655444
No 322
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=47.95 E-value=3.1e+02 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=12.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 141 DLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 141 e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
....+..+...++..+.++..+++++
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555544
No 323
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.89 E-value=1.5e+02 Score=26.42 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHH
Q 013334 271 SFQEKTTTLEVYQ 283 (445)
Q Consensus 271 ~~q~k~~~~e~~~ 283 (445)
|+..++..|+.|.
T Consensus 81 tl~~vI~fLq~l~ 93 (161)
T TIGR02894 81 TLQDVISFLQNLK 93 (161)
T ss_pred CHHHHHHHHHHHH
Confidence 3444455554443
No 324
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.76 E-value=4.6e+02 Score=29.66 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=14.0
Q ss_pred CCCCCCCCCCHHHHHHHHhhcC
Q 013334 1 MSKFDYPRLSATEIVTILTETE 22 (445)
Q Consensus 1 ms~~~FP~l~~~EIv~~L~~~~ 22 (445)
|..-++-.|..+.|...|..+-
T Consensus 1 m~~~~l~~Lef~~i~~~l~~~~ 22 (771)
T TIGR01069 1 MREKDLIKLEFDKVKENLLKQT 22 (771)
T ss_pred CChhhHHhcCHHHHHHHHHHHc
Confidence 4444455677778887777653
No 325
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=47.13 E-value=1.6e+02 Score=25.51 Aligned_cols=41 Identities=17% Similarity=0.460 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 181 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 181 ~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
....+.+...+..|.+........+..++.+..++..++=.
T Consensus 50 ~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~ 90 (141)
T PF13874_consen 50 RERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666667777777777666665533
No 326
>PRK10869 recombination and repair protein; Provisional
Probab=47.12 E-value=4e+02 Score=28.78 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=5.3
Q ss_pred HHHHHHHHhccc
Q 013334 42 LYTRLLIFLDVL 53 (445)
Q Consensus 42 ly~~~l~~~~~~ 53 (445)
|...+-.++|.+
T Consensus 38 ildAi~~llG~r 49 (553)
T PRK10869 38 AIDALGLCLGGR 49 (553)
T ss_pred HHHHHHHHhCCC
Confidence 333333555543
No 327
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.07 E-value=3e+02 Score=27.30 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
+..++.+.-.++.-++.....|..++..++.+......-|++.+.-++
T Consensus 131 ~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv 178 (302)
T PF09738_consen 131 LQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLV 178 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeC
Confidence 333333333334444444445555555555555555555555444444
No 328
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=46.79 E-value=2.7e+02 Score=26.63 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013334 185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe 232 (445)
.+|+.+|.+|.+.|-...-...=+|+..+.+..+..+..+.|..+-+|
T Consensus 54 ~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqe 101 (277)
T PF15030_consen 54 DELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQE 101 (277)
T ss_pred HHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555544443
No 329
>PRK14154 heat shock protein GrpE; Provisional
Probab=46.73 E-value=1.8e+02 Score=27.19 Aligned_cols=70 Identities=9% Similarity=0.296 Sum_probs=46.8
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334 174 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLE 252 (445)
Q Consensus 174 ~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~ 252 (445)
-|.+..+..+...++.++.+++.....+.++++.++.+..+-...+.. .-++++-..++..-|.|.+.|.
T Consensus 51 ~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~---------~a~e~~~~~LLpVlDnLeRAL~ 120 (208)
T PRK14154 51 FPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK---------FGSKQLITDLLPVADSLIHGLE 120 (208)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHhHHHHHHh
Confidence 367788888888899999888888888888888887776554443322 2223344555555666666554
No 330
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.58 E-value=3.1e+02 Score=27.28 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=9.3
Q ss_pred hhHhHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDL 194 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l 194 (445)
.+..|..++..|+..-..+
T Consensus 49 ~~~~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 49 RCKHLQEENRALREASVRI 67 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544433
No 331
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=46.22 E-value=1.9e+02 Score=24.81 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=8.6
Q ss_pred cCHHHHHHHHHHHHHH
Q 013334 242 QSPEKLQRTLEEKKSI 257 (445)
Q Consensus 242 ~SPe~lk~~l~e~k~~ 257 (445)
+.|++|-+.+..+.+.
T Consensus 112 h~~erLa~EI~~l~~s 127 (134)
T PF15233_consen 112 HMPERLAREICALESS 127 (134)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 4466666555555443
No 332
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.11 E-value=1.2e+02 Score=22.47 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
++...-.+..+|.+.+.....+.+++..|+
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 333
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.96 E-value=94 Score=31.11 Aligned_cols=48 Identities=23% Similarity=0.129 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 013334 195 NKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 242 (445)
Q Consensus 195 ~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~ 242 (445)
...|++++..-+.++.-+++|...++.++.+...+...++-|.+++-.
T Consensus 231 ~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 231 QAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333444444445555555555555555555555555556655555544
No 334
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.77 E-value=3.2e+02 Score=27.19 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=59.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHhHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHH
Q 013334 141 DLTRLDEQRSELEDKISQLNAEIAAYNEVREREL-PLVQEVDAKVKELRQTIQDLN----K----HQVSLRTTLNKLKEK 211 (445)
Q Consensus 141 e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~-~~~~el~~e~~~L~~~L~~l~----~----~q~~l~~~~~~lk~e 211 (445)
+.+....+.+.|...+..|+...-.+..+.+.++ -..+.|..+++.|+.+=..|- + .-.+|...+..+..+
T Consensus 42 El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~E 121 (310)
T PF09755_consen 42 ELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQE 121 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556666666655555544444432 233444444444444333331 1 111355566777777
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334 212 TGALDEKFSQ-TEFDLVQSVQQNADLRSKIVQSPEKLQR 249 (445)
Q Consensus 212 ~~~l~~~l~~-~~~~l~~l~qe~~~L~~~Iv~SPe~lk~ 249 (445)
+.++...++. .++.+..+...+.+|+.....-+..|.+
T Consensus 122 K~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~ 160 (310)
T PF09755_consen 122 KVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELER 160 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777774 5555667777777777766555555443
No 335
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.66 E-value=2.6e+02 Score=26.20 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013334 244 PEKLQRTLEEKKSIR 258 (445)
Q Consensus 244 Pe~lk~~l~e~k~~~ 258 (445)
++.++..+.....++
T Consensus 99 ~~~w~~al~na~a~l 113 (221)
T PF05700_consen 99 VEAWKEALDNAYAQL 113 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444454444444443
No 336
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.13 E-value=4e+02 Score=28.20 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=50.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh-hhcCHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK-IVQSPEKLQRTLEEK 254 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~-Iv~SPe~lk~~l~e~ 254 (445)
.+.+.+..++.+..++.+|++++..-..++.++|.+..+|..+|=.+- +.+++-+=+.+ |-..-|.|..-++.+
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~-----ikqeilr~~G~~L~~~EE~Lr~Kldtl 423 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVM-----IKQEILRKRGYALTPDEEELRAKLDTL 423 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhccCCcCCccHHHHHHHHHHH
Confidence 344455677788888888999999888999888888877766653322 23333333333 555556666666665
Q ss_pred HHHH
Q 013334 255 KSIR 258 (445)
Q Consensus 255 k~~~ 258 (445)
-..+
T Consensus 424 l~~l 427 (508)
T KOG3091|consen 424 LAQL 427 (508)
T ss_pred HHHh
Confidence 4443
No 337
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.04 E-value=3.3e+02 Score=29.47 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=46.1
Q ss_pred HHhhhhhHHhHHHH--HHHHHHHHHHHHHHHHH-HH--HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334 317 KARLNDDVVLDKSL--EAKLIERQGKVEQLDEL-QQ--QLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 391 (445)
Q Consensus 317 k~kl~~~~~~~~~L--~~kl~e~q~k~e~l~e~-~~--~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~ 391 (445)
+.+-+.|...++.| ..++++.+.+++.++.. .+ ..-......++.+..++.+.+..+....++++.-...+...-
T Consensus 174 k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~ 253 (555)
T TIGR03545 174 KAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADL 253 (555)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333444444555 55666777777777663 11 122233335555556665555555555555555333333333
Q ss_pred HHHHH-HHhhHHHHHHhcH
Q 013334 392 TEVDA-ITSKTKFVKESGA 409 (445)
Q Consensus 392 ~~v~~-le~~~~~~~~~~e 409 (445)
+.+++ ...+++.++..|.
T Consensus 254 ~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 254 AELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHhccHhHHHHHHHHhC
Confidence 33332 2455556665544
No 338
>PF14282 FlxA: FlxA-like protein
Probab=44.79 E-value=1.7e+02 Score=24.14 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013334 326 LDKSLEAKLIERQGKVEQLDE 346 (445)
Q Consensus 326 ~~~~L~~kl~e~q~k~e~l~e 346 (445)
.++.|+.++..++.++..|..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555555544
No 339
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.79 E-value=3e+02 Score=26.67 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHH
Q 013334 391 VTEVDAITSKTKFVKESGAAKLQELASKAEEIVEK 425 (445)
Q Consensus 391 ~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~ 425 (445)
..++........++.+..=.-+..+...|....+.
T Consensus 188 ~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~ 222 (269)
T cd07673 188 EQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKE 222 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 340
>COG5570 Uncharacterized small protein [Function unknown]
Probab=44.52 E-value=59 Score=23.18 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 013334 154 DKISQLNAEIAAY 166 (445)
Q Consensus 154 ~~i~~l~~~~~~~ 166 (445)
..++.|.+....+
T Consensus 5 shl~eL~kkHg~l 17 (57)
T COG5570 5 SHLAELEKKHGNL 17 (57)
T ss_pred HHHHHHHHhhchH
Confidence 3344444443333
No 341
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.47 E-value=1.6e+02 Score=31.65 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 136 RPIAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
..+..++..+..+++++..+|++++..|+++
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEel 119 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEEL 119 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344455445555555555555555554444
No 342
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.05 E-value=65 Score=32.08 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCChhhhCCCChhHHHHHHHHHH-HHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 013334 25 VITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTL 103 (445)
Q Consensus 25 ~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~ 103 (445)
++...++...+-+.|..+|..|| .+.+.... . . ...++...-....+.+|..|..|+..||..
T Consensus 107 ~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~-~-----~-----~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~----- 170 (321)
T PF08424_consen 107 DFRQSNFASFTVSDVRDVYEKCLRALSRRRSG-R-----M-----TSHPDLPELEEFMLYVFLRLCRFLRQAGYT----- 170 (321)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHhhcc-c-----c-----ccccchhhHHHHHHHHHHHHHHHHHHCCch-----
Confidence 35667788888889999999999 54443321 1 0 011122222345688899999999999985
Q ss_pred ccccCCCcchHHHHHHHHHHHHhhHhh
Q 013334 104 KDLIRPDATRTEYFLSAILNFCLYKDT 130 (445)
Q Consensus 104 ~DL~~P~~~R~~~iLSalINF~rFre~ 130 (445)
.|-.-++-|++-|.-|+=.
T Consensus 171 --------E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 171 --------ERAVALWQALLEFNFFRPE 189 (321)
T ss_pred --------HHHHHHHHHHHHHHcCCcc
Confidence 5666666666666655443
No 343
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.85 E-value=2.1e+02 Score=29.80 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=11.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIA 164 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~ 164 (445)
+++-.+..++.++..+++.|+.+.+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn 52 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERN 52 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555444433
No 344
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.70 E-value=1.7e+02 Score=24.54 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=14.6
Q ss_pred ccCCCcchHHHHHHHHHHHHhhHhh
Q 013334 106 LIRPDATRTEYFLSAILNFCLYKDT 130 (445)
Q Consensus 106 L~~P~~~R~~~iLSalINF~rFre~ 130 (445)
+..|..-++-+++-..|=|+-+--+
T Consensus 52 ~~dp~~~klfrLaQl~ieYLl~~q~ 76 (118)
T PF13815_consen 52 FVDPNFLKLFRLAQLSIEYLLHCQE 76 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666766666443
No 345
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=43.16 E-value=4.4e+02 Score=28.12 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013334 149 RSELEDKISQLNAEIAAY 166 (445)
Q Consensus 149 ~~~l~~~i~~l~~~~~~~ 166 (445)
...+..++..++..+.++
T Consensus 118 l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 346
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=43.01 E-value=22 Score=30.87 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH
Q 013334 4 FDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL 47 (445)
Q Consensus 4 ~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l 47 (445)
+|.-.++..||+..+.++|-|-+-..|.. |.|++|.+|=..|=
T Consensus 58 ~S~R~~~~~evi~~I~~~G~PviVAtDV~-p~P~~V~Kia~~f~ 100 (138)
T PF04312_consen 58 KSSRNMSRSEVIEWISEYGKPVIVATDVS-PPPETVKKIARSFN 100 (138)
T ss_pred EeecCCCHHHHHHHHHHcCCEEEEEecCC-CCcHHHHHHHHHhC
Confidence 45667999999999999999866667754 55999999877766
No 347
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=42.93 E-value=1.4e+02 Score=26.05 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=41.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334 373 MESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 373 ~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~ 437 (445)
.....+.+...+.++..+++ .+..+++.+++.++.++..+...-..|.+.+..|...--..+
T Consensus 5 a~~al~ki~~l~~~~~~i~~---~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~ 66 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEA---EANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDEL 66 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhc
Confidence 33444444444443333333 335677788899999999999999999999999987544433
No 348
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=42.54 E-value=5.3e+02 Score=28.89 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=14.3
Q ss_pred hhhcCHHHHHHHHHHHHHHH
Q 013334 239 KIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 239 ~Iv~SPe~lk~~l~e~k~~~ 258 (445)
....-|+.|+..++.++..+
T Consensus 594 ~~~~~~~~lkeki~~~~~Ei 613 (762)
T PLN03229 594 SGDELDDDLKEKVEKMKKEI 613 (762)
T ss_pred ccCCCCHHHHHHHHHHHHHH
Confidence 34467788888888877755
No 349
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.73 E-value=5.7e+02 Score=28.96 Aligned_cols=6 Identities=17% Similarity=0.146 Sum_probs=2.5
Q ss_pred HHHHHH
Q 013334 87 MVKEVV 92 (445)
Q Consensus 87 ~~~~~l 92 (445)
.++.|+
T Consensus 99 ~l~~~l 104 (771)
T TIGR01069 99 HLKVLS 104 (771)
T ss_pred HHHHHH
Confidence 344444
No 350
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=41.57 E-value=24 Score=23.77 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHhhcC
Q 013334 5 DYPRLSATEIVTILTETE 22 (445)
Q Consensus 5 ~FP~l~~~EIv~~L~~~~ 22 (445)
-||.++...|..||..++
T Consensus 12 mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 12 MFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HCCCCCHHHHHHHHHHcC
Confidence 499999999999999775
No 351
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.42 E-value=2.6e+02 Score=24.93 Aligned_cols=15 Identities=0% Similarity=-0.017 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHcCCC
Q 013334 84 LYSMVKEVVTTVNCP 98 (445)
Q Consensus 84 ~~~~~~~~l~~~gv~ 98 (445)
+|+-+.++...+|.+
T Consensus 8 Ig~EfE~lId~~G~e 22 (158)
T PF09744_consen 8 IGKEFERLIDRYGEE 22 (158)
T ss_pred HHHHHHHHHHHhChh
Confidence 566677788888874
No 352
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=41.34 E-value=1.8e+02 Score=23.17 Aligned_cols=49 Identities=14% Similarity=0.271 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 013334 203 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 251 (445)
Q Consensus 203 ~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l 251 (445)
.++..+....+.|..+|.........++.-+..+..+++...+.++..|
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444445555555555555555555555555555555555443
No 353
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=41.18 E-value=1.5e+02 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 210 EKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 210 ~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
....++..+|.-++.+++.+++.+..|.-++
T Consensus 54 ~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 54 KKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665443
No 354
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.02 E-value=2.2e+02 Score=28.67 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013334 133 NLLRPIAEDLTRLDEQRSELEDKISQLNA 161 (445)
Q Consensus 133 ~~~~~~~~e~~~l~~~~~~l~~~i~~l~~ 161 (445)
..++++.+++..+.+.......+.+++.+
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555555555554443
No 355
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.75 E-value=2.6e+02 Score=24.76 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=25.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 013334 216 DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIRE 259 (445)
Q Consensus 216 ~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~ 259 (445)
..++..+..++......+..|+. -+..++.|+..+++++....
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~-~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKK-SAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHH
Confidence 33334444444444445555554 36777888888888877653
No 356
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.69 E-value=87 Score=31.98 Aligned_cols=42 Identities=10% Similarity=0.276 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013334 357 LKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 398 (445)
Q Consensus 357 ~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le 398 (445)
.++++++..+.++...++.....+......+......+..++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333333433444444433
No 357
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.68 E-value=1.8e+02 Score=28.18 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013334 178 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 221 (445)
Q Consensus 178 ~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~ 221 (445)
-++...+..|++++..|+.+-+.+..+++.++++..++-.+|..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666555544
No 358
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.59 E-value=2.2e+02 Score=23.97 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 013334 215 LDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 251 (445)
Q Consensus 215 l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l 251 (445)
+..+++-++..+..++.....|+..+...-..|+..+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555544444443
No 359
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=39.96 E-value=1.5e+02 Score=26.28 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCChhhh
Q 013334 4 FDYPRLSATEIVTILTETEIAVITENDL 31 (445)
Q Consensus 4 ~~FP~l~~~EIv~~L~~~~i~~~t~~dl 31 (445)
|++|.|+..|+..++. +|++|+
T Consensus 11 ~~~P~l~~~el~~~ft------Ls~~d~ 32 (166)
T PF13700_consen 11 YSLPRLSEEELIRYFT------LSPEDL 32 (166)
T ss_pred cCCCCCCHHHHHHHhC------CCHHHH
Confidence 7899999999998854 566665
No 360
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.24 E-value=4.7e+02 Score=27.89 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013334 137 PIAEDLTRLDEQRSELEDKISQLNAEI 163 (445)
Q Consensus 137 ~~~~e~~~l~~~~~~l~~~i~~l~~~~ 163 (445)
.+.+++..+..+...+.+++..+...+
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 361
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.21 E-value=2.9e+02 Score=24.93 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhh--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQ---QLEKERNL--KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 403 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~---~~~~e~~~--~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~ 403 (445)
+|..+++.++.+++.|..... +.-++.++ .++++..+++.|+.++...+..+.....-+. .| .-+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~----~v------tpe 152 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN----HV------TPE 152 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cC------CHH
Confidence 444555555555555544422 22222222 4666666777666666655433333221111 11 123
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334 404 VKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 404 ~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~ 437 (445)
-+++...+.+..+.++-+...-|+.-.+.+...+
T Consensus 153 dk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~ 186 (201)
T KOG4603|consen 153 DKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGL 186 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555666666666666665555555544433
No 362
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=39.04 E-value=2.3e+02 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH
Q 013334 372 EMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 409 (445)
Q Consensus 372 e~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e 409 (445)
+++....+++...++++.+...+..++++|+-+|..+.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555666666777777777766665543
No 363
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.99 E-value=2.5e+02 Score=24.04 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=13.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 135 ~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
++.+...+..+..+...+...+..+...+.++
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444
No 364
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=38.86 E-value=29 Score=24.09 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.3
Q ss_pred CHHHHHHHHhhcCCCCCChhhh
Q 013334 10 SATEIVTILTETEIAVITENDL 31 (445)
Q Consensus 10 ~~~EIv~~L~~~~i~~~t~~dl 31 (445)
++.+++..-+..|+ .||++||
T Consensus 28 ~~~e~~~lA~~~Gy-~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGY-DFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCC-CCCHHHh
Confidence 78999999999999 7999987
No 365
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.84 E-value=3.3e+02 Score=25.41 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHHH
Q 013334 112 TRTEYFLSAILNFC 125 (445)
Q Consensus 112 ~R~~~iLSalINF~ 125 (445)
+|+.++++|=||=+
T Consensus 5 ~Rl~~iv~a~~n~~ 18 (219)
T TIGR02977 5 SRFADIVNSNLNAL 18 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666666644
No 366
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=38.79 E-value=3.1e+02 Score=25.04 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=54.9
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 315 SLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEV 394 (445)
Q Consensus 315 ~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v 394 (445)
.|..+|+........|...+..+......+++.+..++..-...-......+.. . ....=.+=..|
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~-------e-------h~rll~LWr~v 150 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSS-------E-------HSRLLSLWREV 150 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------c-------ccHHHHHHHHH
Confidence 345555544444455555555555555555555554443333333323332221 1 01111233557
Q ss_pred HHHHhhHHHHHHhcHHHHHHHHHHHHHHHHH
Q 013334 395 DAITSKTKFVKESGAAKLQELASKAEEIVEK 425 (445)
Q Consensus 395 ~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~ 425 (445)
..+.+...+++...+..+..+..+|.+...+
T Consensus 151 ~~lRr~f~elr~~TerdL~~~r~e~~r~~r~ 181 (182)
T PF15035_consen 151 VALRRQFAELRTATERDLSDMRAEFARTSRS 181 (182)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 7788888899999999999999998876543
No 367
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=38.74 E-value=7.1e+02 Score=29.25 Aligned_cols=38 Identities=5% Similarity=0.110 Sum_probs=20.9
Q ss_pred HHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhH
Q 013334 90 EVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYK 128 (445)
Q Consensus 90 ~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFr 128 (445)
.|.+.+-++ -=.|..+++-+|+-=..+|.-|++--+|.
T Consensus 146 ~F~~~v~l~-QG~f~~fl~a~~~eR~~il~~l~g~~~y~ 183 (1047)
T PRK10246 146 RFTRSMLLS-QGQFAAFLNAKPKERAELLEELTGTEIYG 183 (1047)
T ss_pred Hhhhheeec-cccHHHHHhCChHHHHHHHHHHhCcHHHH
Confidence 344444444 34455666655555566666666666654
No 368
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=38.56 E-value=2e+02 Score=22.84 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=22.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF 224 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~ 224 (445)
+.+|..++..|.++...+...-...+......+.+-++...+|....|
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~ 73 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDY 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 333333444444443333333333444455555555555555555444
No 369
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.37 E-value=2.7e+02 Score=25.39 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 234 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~ 234 (445)
.|..-.+.|..-|..+..+|. +..++..++.+...+..++...-..+.....++.
T Consensus 6 ~L~~~d~~L~~~L~~l~~hq~-~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~ 60 (188)
T PF10018_consen 6 DLIEADDELSSALEELQEHQE-NQARIQQLRAEIEELDEQIRDILKQLKEARKELR 60 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544443 3444444455554444444444444444443333
No 370
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=38.02 E-value=2.2e+02 Score=23.12 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhHHHH
Q 013334 259 EEARDAEKLAMQSFQEK 275 (445)
Q Consensus 259 ~~l~~~e~~~~q~~q~k 275 (445)
..|...-+.+|+.||..
T Consensus 92 ~~L~~~f~~~m~~fq~~ 108 (117)
T smart00503 92 EKLRKKFKEVMNEFQRL 108 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444334455555543
No 371
>PLN02320 seryl-tRNA synthetase
Probab=37.94 E-value=3.1e+02 Score=29.29 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=9.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAE 162 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~ 162 (445)
+++-.+.+++.++..+++.|+.+
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~e 115 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAE 115 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 372
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.93 E-value=2.7e+02 Score=24.10 Aligned_cols=35 Identities=6% Similarity=0.206 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 013334 219 FSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 253 (445)
Q Consensus 219 l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e 253 (445)
+..+...+.+...+.+.|-...+.+.-.+..-+..
T Consensus 98 ~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~ 132 (150)
T PF07200_consen 98 LARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQ 132 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 33455556666667777766666654444433333
No 373
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=37.86 E-value=3.9e+02 Score=25.91 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 209 KEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 209 k~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
....+.|..++..++..+.....++.-|..|
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY 110 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLSTY 110 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555544
No 374
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=37.72 E-value=4.1e+02 Score=26.18 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLE---KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK 405 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~---~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~ 405 (445)
.|-.+..+++..+-++++.+++.. ..|...+.+.-.+++.+|+++++....+..----+ .+..-+.++......+.
T Consensus 277 ~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplv-kIkqavsKLk~et~~mn 355 (384)
T KOG0972|consen 277 SLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLV-KIKQAVSKLKEETQTMN 355 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHH-HHHHHHHHHHHHHHhhh
Confidence 355555566666666666666543 23333344444456667777777766665422211 13344666666666665
Q ss_pred HhcHHHHHHHHHHH
Q 013334 406 ESGAAKLQELASKA 419 (445)
Q Consensus 406 ~~~e~ei~~i~~~y 419 (445)
-..--=.+.+..-|
T Consensus 356 v~igv~ehs~lq~~ 369 (384)
T KOG0972|consen 356 VQIGVFEHSILQTY 369 (384)
T ss_pred hheehhhHHHHHHH
Confidence 55555455555544
No 375
>PRK02119 hypothetical protein; Provisional
Probab=37.69 E-value=1.9e+02 Score=22.20 Aligned_cols=7 Identities=71% Similarity=0.786 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 013334 151 ELEDKIS 157 (445)
Q Consensus 151 ~l~~~i~ 157 (445)
.|+.+++
T Consensus 13 ~LE~rla 19 (73)
T PRK02119 13 ELEMKIA 19 (73)
T ss_pred HHHHHHH
Confidence 3333333
No 376
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=37.64 E-value=2.1e+02 Score=22.79 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHH
Q 013334 150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 198 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q 198 (445)
..+.++|.-|+.+++. -|.+-..-.+|..|..++..|+.-+
T Consensus 27 ~~L~eEI~~Lr~qve~--------nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEH--------NPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544332 4666666778888888888776654
No 377
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=37.33 E-value=2e+02 Score=22.56 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 217 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~ 217 (445)
+...++.+...+.++...|..|...++....+..++..
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777766666666555544433
No 378
>PRK10698 phage shock protein PspA; Provisional
Probab=37.23 E-value=3.6e+02 Score=25.36 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 309 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ 350 (445)
Q Consensus 309 ~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~ 350 (445)
.......++..+.........|+.++..++.++.+++.....
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555666666666666666555443
No 379
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=37.20 E-value=2.2e+02 Score=27.36 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=4.6
Q ss_pred HHHhhHh
Q 013334 123 NFCLYKD 129 (445)
Q Consensus 123 NF~rFre 129 (445)
||+||-.
T Consensus 162 nylrfa~ 168 (311)
T PF04642_consen 162 NYLRFAG 168 (311)
T ss_pred hhhhhHH
Confidence 7777743
No 380
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=36.64 E-value=4e+02 Score=25.69 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 169 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 169 (445)
+-.++..+..+...+..++.+|.-+...++.+
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555665555555554444443
No 381
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.60 E-value=6.8e+02 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=13.4
Q ss_pred CCCCCCCCCCHHHHHHHHhhc
Q 013334 1 MSKFDYPRLSATEIVTILTET 21 (445)
Q Consensus 1 ms~~~FP~l~~~EIv~~L~~~ 21 (445)
|..-++-.|..+.|...|.++
T Consensus 1 m~~~~~~~Le~~~i~~~l~~~ 21 (782)
T PRK00409 1 MQEKTLRVLEFNKIKEQLKTF 21 (782)
T ss_pred CChhhHhhCCHHHHHHHHHhH
Confidence 444445567777777777754
No 382
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.55 E-value=2.7e+02 Score=23.65 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=9.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 214 ALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 214 ~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
++.++++.++..+..++..-++++
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~ 97 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 383
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.38 E-value=1.8e+02 Score=24.00 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=11.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013334 135 LRPIAEDLTRLDEQRSELEDKISQLNAEI 163 (445)
Q Consensus 135 ~~~~~~e~~~l~~~~~~l~~~i~~l~~~~ 163 (445)
+..+..+...+..+..+++++++.|..++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333444333333333
No 384
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.76 E-value=5.1e+02 Score=26.74 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA-RQKKVEAVVTEVDAIT 398 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~-~~~~~e~~~~~v~~le 398 (445)
-+...+.+-.-|.+.|+++++...+-+...+..+.+.++...+.++=...+... ....++.....|..||
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445556677778888888888888877777888888877666654433333222 1223555566666666
No 385
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=35.58 E-value=4.3e+02 Score=25.84 Aligned_cols=110 Identities=9% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 013334 296 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMES 375 (445)
Q Consensus 296 l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~ 375 (445)
+.....-.+.+....+.+..-...+..+......++.....+.......+..+..........+..+..++...+..+..
T Consensus 182 l~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~ 261 (297)
T PF02841_consen 182 LQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQ 261 (297)
T ss_dssp HHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHH------HHHHHHHHhhHHHHH
Q 013334 376 KRQDLEARQKKVEAV------VTEVDAITSKTKFVK 405 (445)
Q Consensus 376 ~~~~~e~~~~~~e~~------~~~v~~le~~~~~~~ 405 (445)
....+-......... ..+...+..+|.+++
T Consensus 262 e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 262 EQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 386
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.41 E-value=7e+02 Score=28.22 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 190 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 190 ~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
++.++...-..+......+-..++.+...+.+....+..+...+..|..
T Consensus 510 kIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD 558 (769)
T PF05911_consen 510 KISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD 558 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH
Confidence 3344444444444445555555555555566555555555554444444
No 387
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.40 E-value=1.7e+02 Score=21.19 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 013334 413 QELASKAEEIVEKF 426 (445)
Q Consensus 413 ~~i~~~y~~l~~~~ 426 (445)
+.+..-|+-....|
T Consensus 38 k~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 38 KDLLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHccC
Confidence 45555555444433
No 388
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=35.08 E-value=3.8e+02 Score=27.86 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=13.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 139 AEDLTRLDEQRSELEDKISQLNAEIA 164 (445)
Q Consensus 139 ~~e~~~l~~~~~~l~~~i~~l~~~~~ 164 (445)
++++-.+..++.++..+++.|+.+.+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN 54 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRN 54 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554433
No 389
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=34.83 E-value=2.6e+02 Score=23.03 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
+.+..|+..|+.--..-..+..+.+.+.-....|..+++.+.+++.
T Consensus 26 ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 26 AKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444333333444455555555555555554444444
No 390
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.57 E-value=2.8e+02 Score=24.36 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334 151 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 191 (445)
Q Consensus 151 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L 191 (445)
.....++.|+.++.......+.+...+++++...+.+..++
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555444444444444444444444443333
No 391
>PRK15396 murein lipoprotein; Provisional
Probab=34.54 E-value=2.2e+02 Score=22.19 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHH
Q 013334 113 RTEYFLSAILNFC 125 (445)
Q Consensus 113 R~~~iLSalINF~ 125 (445)
|++-++++++=++
T Consensus 3 ~~kl~l~av~ls~ 15 (78)
T PRK15396 3 RTKLVLGAVILGS 15 (78)
T ss_pred hhHHHHHHHHHHH
Confidence 4444555555433
No 392
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=34.47 E-value=2.5e+02 Score=22.64 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 013334 203 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 247 (445)
Q Consensus 203 ~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~l 247 (445)
....++..+++.-..+.-.+......+..++..|...+..|-+-+
T Consensus 31 ~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 31 QKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELI 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333444444444444444444444555555555554444433
No 393
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=34.36 E-value=59 Score=31.52 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH-HHhcc
Q 013334 5 DYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDV 52 (445)
Q Consensus 5 ~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l-~~~~~ 52 (445)
-||.++.+|++..|..-.-+.+. .+..+....+|.+|+ .++++
T Consensus 2 ~Fp~Ys~~e~~~IL~~~~~~~~~-----~~~~~~~~~ly~~f~~~i~~~ 45 (271)
T PF14630_consen 2 YFPPYSKDELLEILSLDQPSELP-----DLPDDIDRELYNQFVNLILDS 45 (271)
T ss_pred cCCCCCHHHHHHHHhhCCCcccc-----cccchHHHHHHHHHHHHHHHH
Confidence 49999999999999976532122 566778888999888 76654
No 394
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=34.11 E-value=2.8e+02 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 013334 180 VDAKVKELRQTIQDLNKHQVSL-RTTLNKLKE 210 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l-~~~~~~lk~ 210 (445)
++-.+++|+.+|...+..|... ..++++|++
T Consensus 5 mElrIkdLeselsk~Ktsq~d~~~~eLEkYkq 36 (111)
T PF12001_consen 5 MELRIKDLESELSKMKTSQEDSNKTELEKYKQ 36 (111)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHH
Confidence 3344555555555555444433 444444444
No 395
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.75 E-value=7e+02 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhHhhhhh
Q 013334 417 SKAEEIVEKFQQYTNSIGT 435 (445)
Q Consensus 417 ~~y~~l~~~~~~Y~~~~~~ 435 (445)
..|.-|+..++.|...|..
T Consensus 436 eqlk~lV~~~~k~~~e~e~ 454 (716)
T KOG4593|consen 436 EQLKGLVQKVDKHSLEMEA 454 (716)
T ss_pred HHHHHHHHHHHHhhHhhhh
Confidence 3444444555555444443
No 396
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.73 E-value=5e+02 Score=26.04 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=13.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHH
Q 013334 174 LPLVQEVDAKVKELRQTIQDLNK 196 (445)
Q Consensus 174 ~~~~~el~~e~~~L~~~L~~l~~ 196 (445)
-|.+..+..+...|+..|....+
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRN 263 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666555433
No 397
>PLN02678 seryl-tRNA synthetase
Probab=33.69 E-value=2.4e+02 Score=29.73 Aligned_cols=16 Identities=6% Similarity=0.246 Sum_probs=5.7
Q ss_pred HHhhhhHHHHHHHHHH
Q 013334 217 EKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 217 ~~l~~~~~~l~~l~qe 232 (445)
.+|..++..+..+.++
T Consensus 85 ~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 85 KEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 398
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=33.59 E-value=2.9e+02 Score=23.80 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Q 013334 118 LSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN 195 (445)
Q Consensus 118 LSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~ 195 (445)
|-||++|+. ..|...--+-..-.-++.+++++|+.|+.+....+.-...-...|.-|+-.++...+....+.
T Consensus 2 LpGVl~fLQ------~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 2 LPGVLHFLQ------TEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred chHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 399
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.58 E-value=3.7e+02 Score=24.39 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 326 LDKSLEAKLIERQGKVEQLDELQQQLEKERN----LKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTE 393 (445)
Q Consensus 326 ~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~----~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~ 393 (445)
+.-.+-.++..++.+++.+.++.+...+... ........+++.++.++..+..+.++...+.+....+
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 400
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=33.52 E-value=4.5e+02 Score=25.37 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh----hcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI----VQSP-----EKLQRTLEEKKSIREEARDAEKLAMQSFQEK 275 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I----v~SP-----e~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k 275 (445)
+..+..-.......|.++...+..-..+...++.+- ...| ..+...+..++..+......+......|...
T Consensus 31 l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~ 110 (296)
T PF13949_consen 31 LQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESI 110 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444555555555555566666666554 2233 3677777777777777666664444444433
Q ss_pred HHHHH
Q 013334 276 TTTLE 280 (445)
Q Consensus 276 ~~~~e 280 (445)
...+.
T Consensus 111 ~~~l~ 115 (296)
T PF13949_consen 111 EENLE 115 (296)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 401
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.83 E-value=4.1e+02 Score=27.74 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
.++..+..+...+..++..++..+..+
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l 360 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKL 360 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555554444
No 402
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=32.53 E-value=2.4e+02 Score=28.66 Aligned_cols=8 Identities=0% Similarity=0.231 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013334 153 EDKISQLN 160 (445)
Q Consensus 153 ~~~i~~l~ 160 (445)
++++..+.
T Consensus 5 ~~~~~~~~ 12 (378)
T TIGR01554 5 KEQREEIV 12 (378)
T ss_pred HHHHHHHH
Confidence 33333333
No 403
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.47 E-value=6e+02 Score=26.49 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHH-HHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013334 83 KLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFL-SAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA 161 (445)
Q Consensus 83 ~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iL-SalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~ 161 (445)
.-++.|.+..-.||-+ -+..|.|. ++|- |+++|=.-|-..+...-+.+.+-.+ +.+.++..++.-|+.
T Consensus 161 y~~qsl~k~~ls~~~~------a~~snspt--kriss~~~~nssg~ssn~~~tedl~~e~me---e~r~di~~kv~fler 229 (502)
T KOG0982|consen 161 YKYQSLEKDLLSVKKD------AERSNSPT--KRISSSSSFNSSGKSSNKLETEDLLVEGME---EERIDIERKVRFLER 229 (502)
T ss_pred HHHHHHHhhhccccch------hhccCchh--hhhhhhhhcccccccccccchhhhhhhhhh---chhhhHHHHHHHHHH
Confidence 3345566664444444 23344443 2333 3446666665555432222222111 223445555555555
Q ss_pred HHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334 162 EIAAYNEVRERELPLVQEVDAKVKELRQTI 191 (445)
Q Consensus 162 ~~~~~~~~~~~~~~~~~el~~e~~~L~~~L 191 (445)
...++..........-..+..+|-.|..+-
T Consensus 230 kv~eledd~~~~gd~~SrlkqEnlqLvhR~ 259 (502)
T KOG0982|consen 230 KVQELEDDQNIAGDRSSRLKQENLQLVHRY 259 (502)
T ss_pred HHHHhhcchhccccchhHHHHHHHHHHHHH
Confidence 555554433333333333344444444433
No 404
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=32.45 E-value=75 Score=26.05 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 013334 178 QEVDAKVKELRQTI-QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 242 (445)
Q Consensus 178 ~el~~e~~~L~~~L-~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~ 242 (445)
.+++.++.+|.+.| .+-|+--..-+.+...+..+...+...+.+....+..+..++..|+.-+..
T Consensus 18 ~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 18 EQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655 334444444444445555555556666666655555555555555544433
No 405
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=32.43 E-value=3.5e+02 Score=23.80 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=7.9
Q ss_pred cCHHHHHHHHHHHHHHH
Q 013334 242 QSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 242 ~SPe~lk~~l~e~k~~~ 258 (445)
.....+...++.+...-
T Consensus 72 ~~~~~i~~~~~~l~~~w 88 (213)
T cd00176 72 PDAEEIQERLEELNQRW 88 (213)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 34444555555444443
No 406
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.37 E-value=4.5e+02 Score=25.03 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=55.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 254 (445)
Q Consensus 175 ~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~ 254 (445)
|-..+....+..|+..|..|.+.-..|......+-.-..+.-.-+.. +.. .+ .-..|.+.+..+
T Consensus 22 ~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~----L~~-------~E-----~~~~Ls~als~l 85 (234)
T cd07665 22 VWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAM----LGS-------SE-----DNTALSRALSQL 85 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-------cc-----cchhHHHHHHHH
Confidence 34455566777777777777666554444433333322222221111 111 11 112344555555
Q ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 255 KSIREEARDA-EKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 302 (445)
Q Consensus 255 k~~~~~l~~~-e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~l~~~~e~ 302 (445)
.+.-..++.. ++.|.+.+-..-..+.-|.++..-+...+.+...+-..
T Consensus 86 aev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~ 134 (234)
T cd07665 86 AEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQR 134 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544334432 35566655555666777776666555555544444333
No 407
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.24 E-value=4.2e+02 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=17.5
Q ss_pred CCCcccccCCCcchHHHHHHHHH
Q 013334 100 NFTLKDLIRPDATRTEYFLSAIL 122 (445)
Q Consensus 100 DFt~~DL~~P~~~R~~~iLSalI 122 (445)
|..+.-+++|.|..+.-++.|+|
T Consensus 34 n~~f~P~i~~~~p~lvilV~avi 56 (201)
T COG1422 34 NVVFGPLLSPLPPHLVILVAAVI 56 (201)
T ss_pred HHHHhhhccccccHHHHHHHHHH
Confidence 55566677888888888888776
No 408
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.72 E-value=2.6e+02 Score=22.18 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNA 234 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~ 234 (445)
...+..+++.+...+...+.++..+.+|+.
T Consensus 38 R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 38 RRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 334445555555566666666665555544
No 409
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.48 E-value=1.6e+02 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 215 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l 215 (445)
+|.+|+.++..+......|+.+.+.++...-+|
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444434333334444444444444333
No 410
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=31.43 E-value=2e+02 Score=20.64 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 013334 337 RQGKVEQLDELQQQLEKERNLKSEDATRAFEN 368 (445)
Q Consensus 337 ~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~ 368 (445)
|..++++|+..+++..+.+..--......+..
T Consensus 2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~ 33 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSLDRSAARKRLSK 33 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccCCchhHHHHHHH
Confidence 55666677777666555444433334444433
No 411
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.31 E-value=2.7e+02 Score=26.91 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 358 KSEDATRAFENVKLEMESKRQDLEA 382 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~~~e~ 382 (445)
++++++.++..|+..++...++++.
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444444444333333
No 412
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=31.19 E-value=94 Score=21.43 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH-HHh
Q 013334 5 DYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFL 50 (445)
Q Consensus 5 ~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l-~~~ 50 (445)
.|..|+.+|+..-|..+|++. =|=.+.-+.||++=| ..+
T Consensus 2 d~~~LSd~eL~~~L~~~G~~~-------gPIt~sTR~vy~kkL~~~~ 41 (44)
T smart00540 2 DVDRLSDAELRAELKQYGLPP-------GPITDTTRKLYEKKLRKLR 41 (44)
T ss_pred chhHcCHHHHHHHHHHcCCCC-------CCcCcchHHHHHHHHHHHH
Confidence 367899999999999999951 244567789999887 554
No 413
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.78 E-value=3.3e+02 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNAD 235 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~ 235 (445)
++.+..++..++.+++..+..+++++..
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443333333
No 414
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.59 E-value=89 Score=31.93 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=1.1
Q ss_pred hhcCHH
Q 013334 240 IVQSPE 245 (445)
Q Consensus 240 Iv~SPe 245 (445)
|++=||
T Consensus 195 IiGiPE 200 (370)
T PF02994_consen 195 IIGIPE 200 (370)
T ss_dssp EES---
T ss_pred EEecCC
Confidence 333333
No 415
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=30.47 E-value=1.2e+03 Score=29.40 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q 013334 411 KLQELASKAEEIVEKFQQYTNS 432 (445)
Q Consensus 411 ei~~i~~~y~~l~~~~~~Y~~~ 432 (445)
|...+......|...|+.|-..
T Consensus 1091 eAe~LL~qH~~l~eEI~~~~e~ 1112 (2473)
T KOG0517|consen 1091 EAEQLLKQHAALREEIDGYQED 1112 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554443
No 416
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.10 E-value=6.4e+02 Score=26.14 Aligned_cols=61 Identities=21% Similarity=0.363 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 242 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~ 242 (445)
++.-.|..+|...-+.|..+......+..+...+..++...+.++..|+.|...|....|.
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555556666666666666677777777777777766665
No 417
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=7.4e+02 Score=26.72 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 200 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 200 ~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
.+.+....++.-.-.+..+|.+++-.+..-+.+|.++.++++..-..+-
T Consensus 363 dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~d 411 (654)
T KOG4809|consen 363 DLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIED 411 (654)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444445555555556667777888888888888888888776655443
No 418
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=3.7e+02 Score=26.40 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 013334 174 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 247 (445)
Q Consensus 174 ~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~l 247 (445)
+....+|......+...+..+...+.+++.....-+. ++-..|.++...++.+...++++++.|-.-+-.|
T Consensus 121 e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 121 EADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 419
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.67 E-value=2.5e+02 Score=21.16 Aligned_cols=22 Identities=27% Similarity=0.216 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013334 199 VSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 199 ~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
..|+.....+..+...+..+.+
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 420
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.40 E-value=5.2e+02 Score=24.83 Aligned_cols=39 Identities=10% Similarity=0.339 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 201 l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
+....++.+.+..+|..++......+..+++|+++|+..
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666643
No 421
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=28.67 E-value=6.9e+02 Score=26.05 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhh
Q 013334 70 ENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKM 132 (445)
Q Consensus 70 ~~pe~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~ 132 (445)
.-|-.-..-+++.+|+.+|+.+|.+.....=|+..-=++|.-.=|. -+++-|.|--+...
T Consensus 249 lspt~q~s~r~l~al~~h~q~lf~~v~l~~~~~p~~at~P~lp~t~---~gi~~e~r~Q~~ll 308 (514)
T KOG4370|consen 249 LSPTEQESKRGLQALGLHLQTLFEMVRLMVCFSPLHATRPFLPITV---QGIIMEQRIQKDLL 308 (514)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhheeeeeeccccccCCCCCCch---HHHHHHHHHHHHHH
Confidence 4465666677889999999999999765324554444455322221 34555555544443
No 422
>PRK00106 hypothetical protein; Provisional
Probab=28.59 E-value=7.7e+02 Score=26.59 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013334 290 SKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENV 369 (445)
Q Consensus 290 ~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~l 369 (445)
...+..+.+-.+--.-.++.+++-+.+......+..... .....+....+...+..+.+.-.....++...+..+..-
T Consensus 32 ~~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~--ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qR 109 (535)
T PRK00106 32 AAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALK--KELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTER 109 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHH
Q 013334 370 KLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVE 424 (445)
Q Consensus 370 kee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~ 424 (445)
.+.++.+...++.+...++..+..+...+...+..+..++.-+.....+-..+.+
T Consensus 110 EE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 423
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=28.45 E-value=9.2e+02 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.150 Sum_probs=12.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHH
Q 013334 134 LLRPIAEDLTRLDEQRSELEDKISQL 159 (445)
Q Consensus 134 ~~~~~~~e~~~l~~~~~~l~~~i~~l 159 (445)
.|+-|++.-+-+.+..++.....+-|
T Consensus 840 dfe~IIed~dc~~eit~ee~eqkElL 865 (1424)
T KOG4572|consen 840 DFEIIIEDGDCLKEITKEEGEQKELL 865 (1424)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhHHHH
Confidence 34555565555555545444443333
No 424
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.21 E-value=2.6e+02 Score=21.00 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013334 331 EAKLIERQGKVEQLDELQ 348 (445)
Q Consensus 331 ~~kl~e~q~k~e~l~e~~ 348 (445)
+.++.+++.++...+...
T Consensus 3 e~Ri~~LE~~la~qe~~i 20 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTI 20 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 425
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.16 E-value=4.7e+02 Score=23.92 Aligned_cols=18 Identities=6% Similarity=0.257 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 013334 81 IMKLYSMVKEVVTTVNCP 98 (445)
Q Consensus 81 ~l~~~~~~~~~l~~~gv~ 98 (445)
++.+...+...+..-|..
T Consensus 35 Vi~L~e~Ld~~L~~~~ar 52 (189)
T PF10211_consen 35 VIQLQEWLDKMLQQRQAR 52 (189)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 344444455555555554
No 426
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=28.03 E-value=6.2e+02 Score=25.30 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 159 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
++.-+.++....+........+..+|.+|..++.+|-.+......-++..-..+. +...+.
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~ 174 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLG 174 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 4444445544444444455677778888888888877766655544444444443 444333
No 427
>COG0691 SmpB tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.94 E-value=15 Score=32.27 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHcCCCCCCCcccccCCCcchHHHHH
Q 013334 92 VTTVNCPMNFTLKDLIRPDATRTEYFL 118 (445)
Q Consensus 92 l~~~gv~~DFt~~DL~~P~~~R~~~iL 118 (445)
+..|-|+ .|...-.++|+|.|+|++|
T Consensus 59 L~n~hI~-py~~~~~~nhdp~R~RKLL 84 (153)
T COG0691 59 LINAHIS-PYEAGNRFNHDPRRTRKLL 84 (153)
T ss_pred EEecccc-hHhhCCcccCCcchhhhhh
Confidence 4456677 8888889999999999987
No 428
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.87 E-value=3.2e+02 Score=21.85 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 116 YFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 116 ~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
-++.+++=|+.|+-.+.. .+...|.++..+++.+++....++...+.
T Consensus 12 ~v~~~i~~y~~~k~~ka~------~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 12 AVVALILAYLWWKVKKAK------KQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888776654 33444444455555555554444444433
No 429
>PHA02119 hypothetical protein
Probab=27.77 E-value=49 Score=25.01 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCChhhhCC
Q 013334 4 FDYPRLSATEIVTILTETEIAVITENDLKN 33 (445)
Q Consensus 4 ~~FP~l~~~EIv~~L~~~~i~~~t~~dl~~ 33 (445)
.-||-.-+.+||.+|+.+|. .+.-+...|
T Consensus 49 ~kfp~i~~~divdylr~lgy-~~~~~s~rn 77 (87)
T PHA02119 49 AKFPAIMPKDIVDYLRSLGY-DAKSDSFRN 77 (87)
T ss_pred ccCCccccHHHHHHHHHccc-hhccccccC
Confidence 56999999999999999998 555554444
No 430
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=27.74 E-value=2.2e+02 Score=30.11 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 100 NFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 100 DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
.++..|.+-|+|.+.. |-.+..+.|- + ..-+...-+..-+++|+.+|..++..+..
T Consensus 129 ~~~~~~~~~~~p~~~~-----------FG~E~tH~C~-m-~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~~ 184 (475)
T PF10359_consen 129 QTDYGDKYQGDPKRSS-----------FGNEPTHDCL-M-GDNDPRRVQIELIQERLDELEEQIEKHEE 184 (475)
T ss_pred ecCCCCcCCCCCCcCc-----------CCCCCceeeE-e-ecCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888876 7777666552 1 11112222334445555555555554433
No 431
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=27.42 E-value=4.5e+02 Score=23.43 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013334 183 KVKELRQTI 191 (445)
Q Consensus 183 e~~~L~~~L 191 (445)
+.++|...+
T Consensus 90 e~k~L~~~v 98 (158)
T PF09744_consen 90 ERKDLQSQV 98 (158)
T ss_pred HHHHHHHHH
Confidence 333333333
No 432
>PRK14127 cell division protein GpsB; Provisional
Probab=27.16 E-value=2.4e+02 Score=23.51 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=37.0
Q ss_pred CCCcccccCCCcchHHHHHHHHHHHHhh-HhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 100 NFTLKDLIRPDATRTEYFLSAILNFCLY-KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 100 DFt~~DL~~P~~~R~~~iLSalINF~rF-re~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
.+|..||.+-+.++ .|--| .++--..++.+...++.+..+...|++++..|+.++.++..
T Consensus 5 ~LTp~DI~~KeF~~---------~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 5 KLTPKDILEKEFKT---------SMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCHHHHhhCccCC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555665555543 13344 33444566777777877777777777777777776666654
No 433
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.00 E-value=9.2e+02 Score=26.94 Aligned_cols=133 Identities=11% Similarity=0.237 Sum_probs=72.2
Q ss_pred HHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 90 EVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 169 (445)
Q Consensus 90 ~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 169 (445)
...++|+.+ +|++.+- ||-+-+-+.-+.-+++++.. ++.+|..+.+.|......
T Consensus 9 ~I~q~~~t~-~f~~v~~---------------in~lfp~eqSL~~id~li~k----------i~~eir~~d~~l~~~Vr~ 62 (793)
T KOG2180|consen 9 DINQMIPTP-EFNFVEY---------------INELFPAEQSLTNIDSLIQK----------IQGEIRRVDKNLLAVVRT 62 (793)
T ss_pred HHHHhcCCc-chhHHHH---------------HHHhccchhhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHh
Confidence 345566667 7777663 66555666666666655543 344444444444443332
Q ss_pred HHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--hhhhcCHHHH
Q 013334 170 RERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR--SKIVQSPEKL 247 (445)
Q Consensus 170 ~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~--~~Iv~SPe~l 247 (445)
++... ..-.....+...-+.+|-..-.++....+.-..-..++...|..+.+...++.--+.-|. --+|++-+.|
T Consensus 63 q~N~g---~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL 139 (793)
T KOG2180|consen 63 QENSG---TRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESL 139 (793)
T ss_pred ccccc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 011112222333333333333333444555566677788888888888888777777776 3477777777
Q ss_pred HHHH
Q 013334 248 QRTL 251 (445)
Q Consensus 248 k~~l 251 (445)
...+
T Consensus 140 ~~l~ 143 (793)
T KOG2180|consen 140 NALL 143 (793)
T ss_pred HHHH
Confidence 6544
No 434
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=5.5e+02 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHH------HHHhHhhhhhhcc
Q 013334 409 AAKLQELASKAEEIVEK------FQQYTNSIGTLLP 438 (445)
Q Consensus 409 e~ei~~i~~~y~~l~~~------~~~Y~~~~~~~~~ 438 (445)
+++.++....+.+.+.. +..|..-++=-++
T Consensus 128 ~~~~Ka~e~~~kRkQdsa~~~e~a~wy~dyLGleie 163 (246)
T KOG4657|consen 128 QALSKAKENAGKRKQDSADIHEAASWYNDYLGLEIE 163 (246)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHhcCceee
Confidence 33455555555555554 6667666554443
No 435
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.91 E-value=6.2e+02 Score=24.96 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
+..++...+......++....+.++..+++.++
T Consensus 289 lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~K 321 (384)
T KOG0972|consen 289 LSELREKYKQASVGVSSRTETLDEVMDEIEQLK 321 (384)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444443
No 436
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.89 E-value=3.6e+02 Score=22.15 Aligned_cols=15 Identities=0% Similarity=-0.188 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhHhhh
Q 013334 117 FLSAILNFCLYKDTK 131 (445)
Q Consensus 117 iLSalINF~rFre~~ 131 (445)
++++++++....-.+
T Consensus 15 ~~~~~~~~~~~~l~~ 29 (106)
T PF10805_consen 15 VFGIAGGIFWLWLRR 29 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555554443
No 437
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.75 E-value=3.3e+02 Score=21.73 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013334 328 KSLEAKLIERQGKVEQLDELQ 348 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~ 348 (445)
..|+.+...+...++.|+.++
T Consensus 52 ~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 52 DELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 438
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.66 E-value=9.6e+02 Score=27.06 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=15.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRT 203 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~ 203 (445)
+--|+.-|--|+.+|.+.-+.|+.|..
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~ 455 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQS 455 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555566666666666555554443
No 439
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.48 E-value=1.4e+02 Score=29.78 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 200 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 200 ~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
.|...+..+......|+..+......|..+++.+..|+
T Consensus 116 ~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 116 DLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 34444444444455555555555555555555555555
No 440
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.30 E-value=6.1e+02 Score=24.68 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 013334 346 ELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSK 400 (445)
Q Consensus 346 e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~ 400 (445)
+.++.--.+...+.+.+..++++..+........++.+..+.+.+.+.+..|.+.
T Consensus 108 kvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqsi 162 (338)
T KOG3647|consen 108 KVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSI 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333444444444444554444444444444444444444444444444443
No 441
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.17 E-value=5.1e+02 Score=23.71 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 328 KSLEAKLIERQGKVEQLDELQQQ---LEKERNLKSEDATRAFENVKLEMESKRQDLEA 382 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~~~---~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~ 382 (445)
..|+.++.....+.-++.+.... ...+...+-++++++++.++..++..+-++..
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666655332 23344444556666666666655554444443
No 442
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=26.12 E-value=5.4e+02 Score=23.96 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=16.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVS 200 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~ 200 (445)
.+..++-++++|+-.+..++..+++
T Consensus 193 ~~k~le~~k~~Le~~ia~~k~K~e~ 217 (259)
T KOG4001|consen 193 EWKVLEDKKKELELKIAQLKKKLET 217 (259)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777766654
No 443
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.52 E-value=4.9e+02 Score=23.28 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=12.2
Q ss_pred HHHHHHhhHhhhhhhhHHHHHHHH
Q 013334 120 AILNFCLYKDTKMNLLRPIAEDLT 143 (445)
Q Consensus 120 alINF~rFre~~~~~~~~~~~e~~ 143 (445)
.|+-|+|=-..++..|+++.+.++
T Consensus 18 tVLrhIReG~TQL~AFeEvg~~L~ 41 (161)
T TIGR02894 18 TVLRHIREGSTQLSAFEEVGRALN 41 (161)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHc
Confidence 344444444445566665555444
No 444
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.10 E-value=2.9e+02 Score=26.46 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHcCC
Q 013334 84 LYSMVKEVVTTVNC 97 (445)
Q Consensus 84 ~~~~~~~~l~~~gv 97 (445)
-...+..+....|.
T Consensus 64 a~~~i~~~~~~~gG 77 (262)
T PF14257_consen 64 AVKKIENLVESYGG 77 (262)
T ss_pred HHHHHHHHHHHcCC
Confidence 34455566666663
No 445
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.07 E-value=2.8e+02 Score=20.24 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHh
Q 013334 386 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 429 (445)
Q Consensus 386 ~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y 429 (445)
.+..+..+|+.|..++..++...+.=-.++...=++|-..+..|
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 34445555555666666666555555555555556666665555
No 446
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=24.93 E-value=4.2e+02 Score=22.25 Aligned_cols=63 Identities=22% Similarity=0.272 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHH
Q 013334 309 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ-LEKERNLKSEDATRAFENVKLE 372 (445)
Q Consensus 309 ~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~-~~~e~~~~~eel~~~~~~lkee 372 (445)
+++.+...+....+.+.. ...+.++.+.+.++.+-+..+.. ...-...+|.--++++.+.+.+
T Consensus 48 Le~AL~~v~~~Ctd~~l~-~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~e 111 (115)
T PF06476_consen 48 LEKALEEVKAHCTDEGLK-AERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAE 111 (115)
T ss_pred HHHHHHHHHhhcCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 556666666666664444 44666666666666666666553 3333333454444454443333
No 447
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=24.76 E-value=4.5e+02 Score=22.61 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHh
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLEKERN----LKSEDATRAFENVKLEMESK 376 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~~e~~----~~~eel~~~~~~lkee~e~~ 376 (445)
.++.++..+...+++|+-+.++...+.. ..+..++.+++.-+.++.+.
T Consensus 24 ~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~ 75 (131)
T PF11068_consen 24 ELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444443 34444444444433333333
No 448
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=24.75 E-value=5.8e+02 Score=23.89 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=7.7
Q ss_pred HHHhcHHHHHHHHHHHHHH
Q 013334 404 VKESGAAKLQELASKAEEI 422 (445)
Q Consensus 404 ~~~~~e~ei~~i~~~y~~l 422 (445)
.+..++.+...+...|..|
T Consensus 183 ~~~~~~~~~~~~~~~~Q~l 201 (236)
T cd07651 183 LNEIWNREWKAALDDFQDL 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 449
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.69 E-value=6.6e+02 Score=24.50 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013334 184 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV 230 (445)
Q Consensus 184 ~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~ 230 (445)
...|-.-|.+++++...|+.+.+.+..+++++....+-........+
T Consensus 85 rqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~e 131 (389)
T KOG4687|consen 85 RQDLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFE 131 (389)
T ss_pred hhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 35666667777777777777777777777777776665555444433
No 450
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=24.62 E-value=1.7e+02 Score=31.29 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhcccccccC
Q 013334 411 KLQELASKAEEIVEKFQQYTNSIGTLLPVTEIES 444 (445)
Q Consensus 411 ei~~i~~~y~~l~~~~~~Y~~~~~~~~~~~~~~~ 444 (445)
=+..|..+|..|++.++.|...+..+|..|.||-
T Consensus 537 FLnsiqk~YesLv~kv~~yt~nLk~~inNcqiEK 570 (574)
T PF07462_consen 537 FLNSIQKEYESLVNKVNTYTENLKKFINNCQIEK 570 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3578999999999999999999999999998874
No 451
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.56 E-value=1e+03 Score=26.61 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCC
Q 013334 79 VQIMKLYSMVKEVVTTVNCPMNFT 102 (445)
Q Consensus 79 ~~~l~~~~~~~~~l~~~gv~~DFt 102 (445)
+.++.=-..+.++...+|...|..
T Consensus 78 ieiL~Sr~v~~~VV~~L~L~~~~~ 101 (754)
T TIGR01005 78 VEILSSNEILKQVVDKLGLARLPE 101 (754)
T ss_pred HHHHccHHHHHHHHHHcCCCCCcc
Confidence 344444444678888888742433
No 452
>COG5293 Predicted ATPase [General function prediction only]
Probab=24.40 E-value=8.6e+02 Score=25.69 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHhhhhcCHHHHHHHHHHHHH
Q 013334 202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQ----QNADLRSKIVQSPEKLQRTLEEKKS 256 (445)
Q Consensus 202 ~~~~~~lk~e~~~l~~~l~~~~~~l~~l~q----e~~~L~~~Iv~SPe~lk~~l~e~k~ 256 (445)
++++..+++..+.+..+|.++...-..... --..|++++..-||.++..-++.--
T Consensus 254 a~~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~ 312 (591)
T COG5293 254 AQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGV 312 (591)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhh
Confidence 356667777777777777765554443222 2344667788888888877666533
No 453
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.34 E-value=6.1e+02 Score=23.99 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013334 273 QEKTTTLEVYQKTLKKMSK 291 (445)
Q Consensus 273 q~k~~~~e~~~k~~~~l~~ 291 (445)
++....-+.|.|-+..+++
T Consensus 29 ~ERa~IEe~Yak~L~klak 47 (233)
T cd07649 29 RERIKIEEEYAKNLSKLSQ 47 (233)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444555555554444
No 454
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.32 E-value=6.7e+02 Score=24.43 Aligned_cols=12 Identities=33% Similarity=0.590 Sum_probs=5.4
Q ss_pred hhhhhHHHHHHH
Q 013334 131 KMNLLRPIAEDL 142 (445)
Q Consensus 131 ~~~~~~~~~~e~ 142 (445)
+.+++....+++
T Consensus 167 kV~WLR~~L~Ei 178 (269)
T PF05278_consen 167 KVDWLRSKLEEI 178 (269)
T ss_pred chHHHHHHHHHH
Confidence 334555444443
No 455
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.29 E-value=7.9e+02 Score=25.24 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHhhhhcCHHHHHHHHHHHHHH
Q 013334 184 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV---QQNADLRSKIVQSPEKLQRTLEEKKSI 257 (445)
Q Consensus 184 ~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~---qe~~~L~~~Iv~SPe~lk~~l~e~k~~ 257 (445)
.+.+..+|.+..+.|+.|...|+.+|..... +..|-...|. =..++|+.++-+--+--+..+..+|..
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~kr------dy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqE 332 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKR------DYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQE 332 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6778888888999999999999999877643 2333333333 345666666655555555555555543
No 456
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=24.25 E-value=6.2e+02 Score=24.01 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 245 EKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQV 303 (445)
Q Consensus 245 e~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~l~~~~e~~ 303 (445)
++.+....+........+|--..+++.++...... | ..+|+..+..+|.+++..
T Consensus 164 eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~y--Y---~~~lP~ll~~lQ~l~E~r 217 (237)
T cd07657 164 DKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDY--R---TLLLPGLLNSLQSLQEEF 217 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---HhHHHHHHHHHHHHHHHH
Confidence 33444444444444555665555666555443322 2 347888888899988873
No 457
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.20 E-value=2.6e+02 Score=24.84 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 182 AKVKELRQTIQDLNKHQVSLR-----TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~-----~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
.+...|+.++.++++++..+. +++.+++-+.+++..+++++......-+......-..+
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=24.10 E-value=7.2e+02 Score=24.69 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHH--------HcCC-------CCCCCcccccCCCcchHHHHHHHHHHHHh
Q 013334 77 RSVQIMKLYSMVKEVVT--------TVNC-------PMNFTLKDLIRPDATRTEYFLSAILNFCL 126 (445)
Q Consensus 77 ~s~~~l~~~~~~~~~l~--------~~gv-------~~DFt~~DL~~P~~~R~~~iLSalINF~r 126 (445)
++..+++|...|.-|.. .|.| + |+.+. ..=++.+.+.|-||+.
T Consensus 120 DasALLNlin~Cd~F~~~d~~~v~eVI~~RN~~MHS~-emkvs------~~wm~~~~~~i~nll~ 177 (307)
T PF15112_consen 120 DASALLNLINSCDHFKKYDRKKVREVIKCRNEIMHSS-EMKVS------SQWMRDFQMKIQNLLN 177 (307)
T ss_pred CHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhcCc-ccccC------HHHHHHHHHHHHHHHH
Confidence 34556777777766655 2322 2 34333 3567788888888888
No 459
>PRK15396 murein lipoprotein; Provisional
Probab=24.06 E-value=3.5e+02 Score=21.09 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHh
Q 013334 384 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 429 (445)
Q Consensus 384 ~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y 429 (445)
..++..+..+++.+....+.++.+.++=..+....=.+|-..+..|
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555556666666666666665555555555555665555555
No 460
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=23.87 E-value=2.7e+02 Score=23.10 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 013334 219 FSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 249 (445)
Q Consensus 219 l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~ 249 (445)
|.++......+++|+.-|+. .-|||-|..
T Consensus 76 I~eL~er~~~Le~EN~lLk~--~~spe~L~q 104 (123)
T KOG4797|consen 76 IRELEERNSALERENSLLKT--LASPEQLAQ 104 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hCCHHHHHH
Confidence 33334444555666666654 457777664
No 461
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=23.68 E-value=4.6e+02 Score=23.04 Aligned_cols=55 Identities=7% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334 373 MESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 373 ~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~ 427 (445)
|.+...-++.|+..+..-.........+...+...|+..+..+..+...+...+.
T Consensus 30 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14471 30 WKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAR 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>COG5250 RPB4 RNA polymerase II, fourth largest subunit [Transcription]
Probab=23.66 E-value=2.6e+02 Score=23.55 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=23.0
Q ss_pred CCCcccccCCCcchHHHHHHHHHHHHhhHhhhh
Q 013334 100 NFTLKDLIRPDATRTEYFLSAILNFCLYKDTKM 132 (445)
Q Consensus 100 DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~ 132 (445)
+|-..|. +-++..+.++=||+||++.-.
T Consensus 49 e~~s~dv-----k~~k~T~~Yl~~F~Rfkd~e~ 76 (138)
T COG5250 49 EFRSNDV-----KVFKSTLGYLDDFCRFKDKEV 76 (138)
T ss_pred cccchhH-----HHHHHHHHHHHHHHHhhhHHH
Confidence 6666665 788999999999999998643
No 463
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=23.38 E-value=4.8e+02 Score=22.44 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHhhhhHHHHHH
Q 013334 334 LIERQGKVEQLDELQQQLEKERNLKSEDAT----RAFENVKLEMESKRQDLEARQK 385 (445)
Q Consensus 334 l~e~q~k~e~l~e~~~~~~~e~~~~~eel~----~~~~~lkee~e~~~~~~e~~~~ 385 (445)
+.+++.++..++.++.++.-...+.+.+.. ..+..++..++.....+.....
T Consensus 22 ~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~ 77 (131)
T PF11068_consen 22 LQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKN 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666666666665 5556665665555444444333
No 464
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=23.38 E-value=3.9e+02 Score=21.43 Aligned_cols=15 Identities=47% Similarity=0.423 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 013334 150 SELEDKISQLNAEIA 164 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~ 164 (445)
..++.++..+..++.
T Consensus 27 ~~lE~k~~rl~~Ek~ 41 (96)
T PF08647_consen 27 TILEQKKLRLEAEKA 41 (96)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 465
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.27 E-value=5.2e+02 Score=22.79 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
-++..++..-.+|..|...+..-..+|...-+..++...+-..+...+.+|..+.++++
T Consensus 88 ~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444444444444444444455555555555555554
No 466
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=23.18 E-value=6e+02 Score=23.50 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=5.2
Q ss_pred hcHHHHHHHHHH
Q 013334 407 SGAAKLQELASK 418 (445)
Q Consensus 407 ~~e~ei~~i~~~ 418 (445)
+++..|+.+...
T Consensus 136 ~YesRI~dLE~~ 147 (196)
T PF15272_consen 136 AYESRIADLERQ 147 (196)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 467
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.14 E-value=4.8e+02 Score=22.32 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELE 153 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~ 153 (445)
+..+++.+..+.+.|.
T Consensus 25 v~~~l~~LEae~q~L~ 40 (126)
T PF09403_consen 25 VESELNQLEAEYQQLE 40 (126)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 468
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.93 E-value=1.8e+02 Score=21.85 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 013334 183 KVKELRQTIQDL 194 (445)
Q Consensus 183 e~~~L~~~L~~l 194 (445)
++..|+.++..+
T Consensus 39 e~~~L~~ei~~l 50 (80)
T PF04977_consen 39 ENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHh
Confidence 333344444333
No 469
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.92 E-value=4.9e+02 Score=22.40 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhHh-hhhhhhHHHHHHHH
Q 013334 117 FLSAILNFCLYKD-TKMNLLRPIAEDLT 143 (445)
Q Consensus 117 iLSalINF~rFre-~~~~~~~~~~~e~~ 143 (445)
++=.+|||+-+-= -+.-.|.|+..-++
T Consensus 10 ~~~qli~Flil~~~l~kfl~kPi~~~l~ 37 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYKPLLKFMD 37 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665522 23445566654443
No 470
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.57 E-value=8.5e+02 Score=25.01 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 013334 296 MQAILEQVNSAKSI----EKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKL 371 (445)
Q Consensus 296 l~~~~e~~~~~k~~----e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lke 371 (445)
++++.+.++..++. +..+-.||.++... ++-+.+-|.|=.-|.+.|+++++.+.+-....+..+.++++...+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krd---y~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmee 338 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRD---YKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEE 338 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655553 33333445444321 223344455666778888888888877777778888877777666
Q ss_pred HHHHhhhhHHHH-HHHHHHHHHHHHHHHhh
Q 013334 372 EMESKRQDLEAR-QKKVEAVVTEVDAITSK 400 (445)
Q Consensus 372 e~e~~~~~~e~~-~~~~e~~~~~v~~le~~ 400 (445)
.+.=...++.+- +...+.....+..||..
T Consensus 339 rvaYQsyERaRdIqEalEscqtrisKlEl~ 368 (455)
T KOG3850|consen 339 RVAYQSYERARDIQEALESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544444432 22244455556555543
No 471
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.42 E-value=72 Score=26.17 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccccC--CCcchHHHHHHHHH
Q 013334 83 KLYSMVKEVVTTVNCPMNFTLKDLIR--PDATRTEYFLSAIL 122 (445)
Q Consensus 83 ~~~~~~~~~l~~~gv~~DFt~~DL~~--P~~~R~~~iLSalI 122 (445)
.-.+...+++..-|+ +|.+.|+.+ |+...+..+++.+=
T Consensus 7 ~t~rka~~~L~~~gi--~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 7 STCRKALKWLEENGI--EYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp HHHHHHHHHHHHTT----EEEEETTTS---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC--CeEeehhhhCCCCHHHHHHHHHHhc
Confidence 345667789999999 699999988 89998888888764
No 472
>PHA01750 hypothetical protein
Probab=22.31 E-value=3.4e+02 Score=20.36 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=7.1
Q ss_pred HHHhhHhhhhhhhHHHH
Q 013334 123 NFCLYKDTKMNLLRPIA 139 (445)
Q Consensus 123 NF~rFre~~~~~~~~~~ 139 (445)
=|.+-+..-.+.+.+++
T Consensus 24 lYlKIKq~lkdAvkeIV 40 (75)
T PHA01750 24 LYLKIKQALKDAVKEIV 40 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444334444433
No 473
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.25 E-value=6.1e+02 Score=23.23 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013334 186 ELRQTIQDLNKHQVSLRTTLNKL 208 (445)
Q Consensus 186 ~L~~~L~~l~~~q~~l~~~~~~l 208 (445)
+|..++..+.+.-..++.++..+
T Consensus 120 el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 120 ELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333333
No 474
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=22.14 E-value=9.6e+02 Score=25.47 Aligned_cols=12 Identities=17% Similarity=-0.009 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhh
Q 013334 116 YFLSAILNFCLY 127 (445)
Q Consensus 116 ~iLSalINF~rF 127 (445)
.+|+++.||-+.
T Consensus 4 ~~lnm~~~f~~l 15 (604)
T KOG3564|consen 4 MMLNMRNLFEQL 15 (604)
T ss_pred HHHHHHHhHHHH
Confidence 467777777554
No 475
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.10 E-value=7e+02 Score=23.82 Aligned_cols=69 Identities=13% Similarity=0.329 Sum_probs=0.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLE 252 (445)
Q Consensus 175 ~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~ 252 (445)
..+..+..+...|+.++.+++.....+.++++.++.+..+=...+..... .++-..++.--|.|.+.+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~---------~~~~~~lLpV~DnLerAl~ 135 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLK---------CNTLSEILPVVDNFERARQ 135 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHh
No 476
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=22.05 E-value=81 Score=23.29 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhcCCCCCChhhh
Q 013334 10 SATEIVTILTETEIAVITENDL 31 (445)
Q Consensus 10 ~~~EIv~~L~~~~i~~~t~~dl 31 (445)
++.+++...++.|+ .||.++|
T Consensus 26 ~~e~~~~lA~~~Gf-~ft~~el 46 (64)
T TIGR03798 26 DPEDRVAIAKEAGF-EFTGEDL 46 (64)
T ss_pred CHHHHHHHHHHcCC-CCCHHHH
No 477
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=22.02 E-value=2.4e+02 Score=27.66 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
..++.+||+.|+.++..++.. +......++.+..+|..-+.
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~---~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQ---LEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
No 478
>PRK00295 hypothetical protein; Provisional
Probab=21.87 E-value=3.5e+02 Score=20.32 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Q 013334 145 LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN 195 (445)
Q Consensus 145 l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~ 195 (445)
+.++...|+.+++-...-|+++...-......+..+...+..|..++..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 479
>PLN02320 seryl-tRNA synthetase
Probab=21.75 E-value=6.2e+02 Score=27.06 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=0.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 175 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLN---------KLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 175 ~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~---------~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
+.+-++..+...+..++..|+..+..+...+. .++++...+.+++..++..+..+..++..+-..|
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 480
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.63 E-value=7.8e+02 Score=24.23 Aligned_cols=100 Identities=16% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHhhhhhhhHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Q 013334 117 FLSAILNFCLYKDTKMNLLRPIAEDLTR-LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN 195 (445)
Q Consensus 117 iLSalINF~rFre~~~~~~~~~~~e~~~-l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~ 195 (445)
.++|=|-|.-|+=-|.-++--++.+..+ +......|.+....+...+..+ ...-...-+.+...-++|-..|..+.
T Consensus 91 vi~aGi~y~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l---~~~va~v~q~~~~qq~Els~~L~~l~ 167 (300)
T KOG2629|consen 91 VILAGIAYAAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNAL---MDEVAQVSQLLATQQSELSRALASLK 167 (300)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 013334 196 KHQVSLRTTLNKLKEKTGALDEKF 219 (445)
Q Consensus 196 ~~q~~l~~~~~~lk~e~~~l~~~l 219 (445)
..+..+...+++++.+.+.+...+
T Consensus 168 ~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 168 NTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
No 481
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=21.63 E-value=3.4e+02 Score=29.29 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
++|-++.-+|+-.++-|+.+++..|.-+-.|..+|.+++.++..++++...-+.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.60 E-value=5.1e+02 Score=22.06 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHH----------------------------------
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVK---------------------------------- 185 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~---------------------------------- 185 (445)
.++..+..+...++..+..+...+..+......-....+.+..=..
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g 85 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAG 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCC
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013334 186 -----ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 186 -----~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe 232 (445)
.+..-+..+++.-..+....+.+......+.+.++.+...+.++.++
T Consensus 86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.54 E-value=4.5e+02 Score=23.28 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 339 GKVEQLDELQQQLEKERNL--------KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEV 394 (445)
Q Consensus 339 ~k~e~l~e~~~~~~~e~~~--------~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v 394 (445)
.+...++.+..+..+|... +...++++++.+.++++.........+..++..-..+
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK14153 heat shock protein GrpE; Provisional
Probab=21.34 E-value=6.5e+02 Score=23.22 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=0.0
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 013334 173 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLE 252 (445)
Q Consensus 173 ~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~ 252 (445)
+.+.+..+..+...++.++.+++.....+.++++.++.+..+=...+..... +++-..++..-|.|.+.+.
T Consensus 31 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~---------~~~~~~LLpv~DnLerAl~ 101 (194)
T PRK14153 31 EEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVL---------EQVLLDLLEVTDNFERALE 101 (194)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHhHHHHHHh
No 485
>PF14282 FlxA: FlxA-like protein
Probab=21.19 E-value=4.7e+02 Score=21.45 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 013334 181 DAKVKELRQTIQDLNKHQVSLRT----TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP 244 (445)
Q Consensus 181 ~~e~~~L~~~L~~l~~~q~~l~~----~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SP 244 (445)
...+..|+..|..|..+-..|.. .-+..+.....|...|..+...|..+..+...-...-..++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~~~~ 85 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQSSS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
No 486
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.18 E-value=5.6e+02 Score=26.77 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE-------------KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 243 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~-------------e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~S 243 (445)
++..+.+.|..++..++.....+...+..++. ....+......+...+..+..+...|+..+..+
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 487
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.95 E-value=6e+02 Score=22.65 Aligned_cols=129 Identities=14% Similarity=0.292 Sum_probs=0.0
Q ss_pred HhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhH--------HHHHHHHHHHHHHHHHHHH
Q 013334 128 KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEV--------DAKVKELRQTIQDLNKHQV 199 (445)
Q Consensus 128 re~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el--------~~e~~~L~~~L~~l~~~q~ 199 (445)
+++-..+.+..-.+++.+..+..+++..+...-.+.+.+...-..-...+-++ +.++++.-.+-..+.-.-.
T Consensus 15 K~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~ 94 (159)
T PF05384_consen 15 KEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLA 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhhcCHHHHHHHHHHHHH
Q 013334 200 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR---SKIVQSPEKLQRTLEEKKS 256 (445)
Q Consensus 200 ~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~---~~Iv~SPe~lk~~l~e~k~ 256 (445)
.++++-..++.+.+.|...+..+...+.....-...+. .++.+.-..+-..+++++.
T Consensus 95 ~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 95 MLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 488
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.82 E-value=6.9e+02 Score=23.25 Aligned_cols=157 Identities=10% Similarity=0.119 Sum_probs=0.0
Q ss_pred hcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHH
Q 013334 241 VQSPE-KLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQ-----MQAILEQ-VNSAKSIEKDY 313 (445)
Q Consensus 241 v~SPe-~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~-----l~~~~e~-~~~~k~~e~~~ 313 (445)
+..|+ -|...+.+|...+.+++..--.++-+-+.....+..+.....+....-.. -+++-.. +......+...
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 314 KSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTE 393 (445)
Q Consensus 314 k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~ 393 (445)
..++.++......+..|..++..++.+++.++.....+......--....-.-.--...........+.....+...++.
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~ 181 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQ 181 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 013334 394 VDAI 397 (445)
Q Consensus 394 v~~l 397 (445)
....
T Consensus 182 aea~ 185 (219)
T TIGR02977 182 AESY 185 (219)
T ss_pred HHHh
No 489
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.55 E-value=6e+02 Score=22.49 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHH
Q 013334 114 TEYFLSAILNFCLYKDTKM-NLLRPIAEDLTR-------LDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVK 185 (445)
Q Consensus 114 ~~~iLSalINF~rFre~~~-~~~~~~~~e~~~-------l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~ 185 (445)
+.-.|++++||..-...+. ..+++...+... -.+......++.......+..+..--.--....+....++.
T Consensus 3 ll~~l~~~vkk~a~~~p~~ess~ee~~ve~~~~rve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eele 82 (157)
T COG3352 3 LLDNLKKLVKKEATEEPQQESSDEEKQVEAIHSRVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELE 82 (157)
T ss_pred chHHHHHHHHHHHHhcchhhhhhhhHhHHHhhcccccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Q 013334 186 ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK-FSQTEFDLVQSVQQNA 234 (445)
Q Consensus 186 ~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~-l~~~~~~l~~l~qe~~ 234 (445)
.|+.+++.+....+-+..++.-++.+.-.-..- ++++..++.++....+
T Consensus 83 rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~e 132 (157)
T COG3352 83 RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVE 132 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.52 E-value=5.9e+02 Score=22.35 Aligned_cols=133 Identities=11% Similarity=0.194 Sum_probs=0.0
Q ss_pred ccccCCCcchHHHHHHHHHHHHhh-HhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHH
Q 013334 104 KDLIRPDATRTEYFLSAILNFCLY-KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDA 182 (445)
Q Consensus 104 ~DL~~P~~~R~~~iLSalINF~rF-re~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~ 182 (445)
+|.+-|.+ -.++--+|||+-| -=-..-.|.|+..-++... ..+...+........+.....+.-+..+.+...
T Consensus 1 ~~~l~~~~---~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~---~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ 74 (164)
T PRK14471 1 MDLLTPDF---GLFFWQTILFLILLLLLAKFAWKPILGAVKERE---DSIKNALASAEEARKEMQNLQADNERLLKEARA 74 (164)
T ss_pred CCcccCcH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhhhc
Q 013334 183 KVKELRQTIQDLNKHQV--SLRTTLNKLKEKTGALDEKFS-QTEFDLVQSVQQNADLRSKIVQ 242 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~--~l~~~~~~lk~e~~~l~~~l~-~~~~~l~~l~qe~~~L~~~Iv~ 242 (445)
+-..+-..-..--.... .+..........+......++ +....+..++.++..+-..++.
T Consensus 75 ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~ 137 (164)
T PRK14471 75 ERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAE 137 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=20.36 E-value=1.6e+02 Score=26.78 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCCC------CCcccccCCC-----cchHHHHHHHHHHHHhhH
Q 013334 81 IMKLYSMVKEVVTTVNCPMN------FTLKDLIRPD-----ATRTEYFLSAILNFCLYK 128 (445)
Q Consensus 81 ~l~~~~~~~~~l~~~gv~~D------Ft~~DL~~P~-----~~R~~~iLSalINF~rFr 128 (445)
++.+|..++++.. ++ . +.+.||..|| |--+--+++++.+|+-.+
T Consensus 82 f~~~~~~lr~~~~---~~-~~~~~g~lw~~dL~~~D~~~~~p~~iLPil~~~~~~~~~~ 136 (198)
T PF02096_consen 82 FIGLFRALRRMAE---VP-SLATGGFLWFPDLTAPDPTMGLPYFILPILAGASMFLNQE 136 (198)
T ss_pred HHHHHHHHHHHHH---hc-ccccCceeChHhcCCCCccchhHHHHHHHHHHHHHHHHHH
No 492
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.30 E-value=1.5e+02 Score=21.73 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 131 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 131 ~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
|.+..-.+.++.+.|.++..++.+++.+|+.++.-++.
T Consensus 5 KtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 5 KTHLMYAVREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp CCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.17 E-value=1.1e+03 Score=27.78 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHH-HHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHH
Q 013334 42 LYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSA 120 (445)
Q Consensus 42 ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSa 120 (445)
|.+|+| .-+|.+ ..+...+++.+-+-. |++++.-|++--..+.+....-|+.|-+-+=|
T Consensus 304 VLTWLLkEnLGGN----SKTaMIAAlSPAdiN--yeETLSTLRYAdRAK~Iv~~avVNEdpnaKLI-------------- 363 (1221)
T KOG0245|consen 304 VLTWLLKENLGGN----SKTAMIAALSPADIN--YEETLSTLRYADRAKQIVNNAVVNEDPNAKLI-------------- 363 (1221)
T ss_pred HHHHHHHHhcCCc----chhhhhhccChhhcC--hHHHHHHHHHhhHhhhhhccceeCCCccHHHH--------------
Q ss_pred HHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccchhHhHHHHHHHHHHHH
Q 013334 121 ILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER---------ELPLVQEVDAKVKELRQTI 191 (445)
Q Consensus 121 lINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~---------~~~~~~el~~e~~~L~~~L 191 (445)
.+|++++..|+..+.....-... ..+.+.++..+.++-+..+
T Consensus 364 -----------------------------RELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~m 414 (1221)
T KOG0245|consen 364 -----------------------------RELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIM 414 (1221)
T ss_pred -----------------------------HHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 192 QDLNKHQVSLRTTLNKLKEKTGALDEK 218 (445)
Q Consensus 192 ~~l~~~q~~l~~~~~~lk~e~~~l~~~ 218 (445)
.++++.=+.--.+.+..+.+...+..+
T Consensus 415 ael~etW~EKl~~aEair~e~~~~L~e 441 (1221)
T KOG0245|consen 415 AELNETWEEKLREAEAIRMEREALLAE 441 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHh
No 494
>PHA01750 hypothetical protein
Probab=20.17 E-value=3.8e+02 Score=20.15 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 166 YNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 215 (445)
Q Consensus 166 ~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l 215 (445)
++-++.-..+..+=+..+...|..+|.+++..|..+.....++|.....+
T Consensus 26 lKIKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk~ 75 (75)
T PHA01750 26 LKIKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDKK 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
No 495
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.15 E-value=5.1e+02 Score=21.46 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013334 308 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKV 387 (445)
Q Consensus 308 ~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~ 387 (445)
...+++-....-|......+......+......+..-+..+......-+.-+.+...+........+...+.......++
T Consensus 4 ~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei 83 (126)
T PF13863_consen 4 EKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHhcHH
Q 013334 388 EAVVTEVDAITSKTKFVKESGAA 410 (445)
Q Consensus 388 e~~~~~v~~le~~~~~~~~~~e~ 410 (445)
..+...+..+...+..+....+.
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=20.14 E-value=4.3e+02 Score=20.61 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 233 NADLRSKIVQSPEKLQRTLEEKKSIREEARDAE--KLAMQSFQEKTTTLEVYQKTLKKMSK 291 (445)
Q Consensus 233 ~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e--~~~~q~~q~k~~~~e~~~k~~~~l~~ 291 (445)
+..|+.-+-+||+..++.+..+......|+..- ..+-+..|..+-.++.|..+.+.+..
T Consensus 4 LT~LEDsLr~~~~~a~~~i~~L~aa~~rL~~al~~P~sp~qYqq~t~l~ea~lqA~~IIn~ 64 (80)
T PRK15366 4 LTRLEDLLLHSREEAKGIILQLRAARKQLEENNGKLQDPQQYQQNTLLLEAIEQAENIINI 64 (80)
T ss_pred hhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Done!