Query 013334
Match_columns 445
No_of_seqs 220 out of 315
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_C Kinetochore protein NUF 100.0 3.9E-41 1.3E-45 319.5 14.1 166 1-170 6-178 (250)
2 1c1g_A Tropomyosin; contractIl 98.5 0.00072 2.5E-08 63.1 42.7 24 410-433 258-281 (284)
3 1i84_S Smooth muscle myosin he 98.0 1.2E-05 4.2E-10 92.0 11.0 10 88-97 752-761 (1184)
4 1i84_S Smooth muscle myosin he 97.9 3.8E-05 1.3E-09 87.9 11.1 8 13-20 607-614 (1184)
5 2v71_A Nuclear distribution pr 97.2 0.11 3.9E-06 46.1 21.1 88 150-240 20-111 (189)
6 3na7_A HP0958; flagellar bioge 96.9 0.21 7.1E-06 46.9 22.0 60 361-426 129-188 (256)
7 3na7_A HP0958; flagellar bioge 96.8 0.16 5.6E-06 47.6 20.6 46 332-377 125-170 (256)
8 3vkg_A Dynein heavy chain, cyt 96.4 1.7 5.7E-05 54.3 29.9 58 135-196 1897-1955(3245)
9 3u1c_A Tropomyosin alpha-1 cha 96.0 0.23 7.8E-06 39.7 13.7 91 150-240 5-95 (101)
10 3u59_A Tropomyosin beta chain; 95.6 0.42 1.4E-05 38.1 13.7 90 151-240 6-95 (101)
11 3vkg_A Dynein heavy chain, cyt 95.2 7.1 0.00024 48.8 28.4 16 407-422 2088-2103(3245)
12 2dfs_A Myosin-5A; myosin-V, in 94.8 0.77 2.6E-05 51.8 17.8 50 209-258 920-969 (1080)
13 3o0z_A RHO-associated protein 94.1 2.4 8.2E-05 36.8 15.3 19 144-162 59-77 (168)
14 3ghg_A Fibrinogen alpha chain; 93.8 2.6 8.8E-05 42.8 17.0 63 295-357 100-163 (562)
15 2ve7_A Kinetochore protein HEC 93.8 1.6 5.4E-05 42.2 15.3 40 12-51 19-59 (315)
16 2v71_A Nuclear distribution pr 93.0 4.6 0.00016 35.8 17.1 36 204-239 89-124 (189)
17 2dfs_A Myosin-5A; myosin-V, in 92.8 2.7 9.1E-05 47.5 17.3 112 143-258 917-1032(1080)
18 3ol1_A Vimentin; structural ge 92.6 3.6 0.00012 33.6 13.7 94 137-240 24-117 (119)
19 2jee_A YIIU; FTSZ, septum, coi 92.4 2.8 9.6E-05 31.8 12.0 26 143-168 9-34 (81)
20 2ve7_C Kinetochore protein NUF 91.7 0.34 1.1E-05 45.3 7.0 161 90-251 21-217 (250)
21 2fxo_A Myosin heavy chain, car 91.1 5.9 0.0002 32.8 15.3 32 202-233 68-99 (129)
22 3s84_A Apolipoprotein A-IV; fo 90.9 11 0.00037 35.5 27.0 35 180-214 42-77 (273)
23 3oja_B Anopheles plasmodium-re 90.6 4.6 0.00016 42.0 15.4 6 113-118 403-408 (597)
24 1x79_B RAB GTPase binding effe 90.2 3.5 0.00012 33.3 10.7 67 169-238 39-105 (112)
25 2ocy_A RAB guanine nucleotide 90.1 8.2 0.00028 33.0 17.2 106 133-238 37-143 (154)
26 2jee_A YIIU; FTSZ, septum, coi 89.6 4.6 0.00016 30.6 10.2 64 150-220 9-72 (81)
27 3o0z_A RHO-associated protein 89.4 9.9 0.00034 32.9 20.3 64 358-421 91-154 (168)
28 3ol1_A Vimentin; structural ge 88.8 8.5 0.00029 31.4 14.7 95 311-416 20-114 (119)
29 3swk_A Vimentin; cytoskeleton, 88.8 5.6 0.00019 30.5 10.5 76 136-211 3-78 (86)
30 1ic2_A Tropomyosin alpha chain 88.4 6.1 0.00021 29.9 10.5 69 154-222 6-74 (81)
31 3cvf_A Homer-3, homer protein 88.2 5.6 0.00019 30.0 9.8 61 176-236 14-74 (79)
32 3cve_A Homer protein homolog 1 87.4 6.9 0.00023 29.0 9.7 58 179-236 11-68 (72)
33 3i00_A HIP-I, huntingtin-inter 87.1 6 0.00021 32.4 10.3 93 332-424 15-113 (120)
34 3ghg_A Fibrinogen alpha chain; 87.0 4.3 0.00015 41.2 11.2 17 150-166 60-76 (562)
35 2fxo_A Myosin heavy chain, car 86.5 13 0.00043 30.8 15.4 19 148-166 35-53 (129)
36 3q8t_A Beclin-1; autophagy, AT 86.2 11 0.00036 29.6 14.7 88 144-238 8-95 (96)
37 2e7s_A RAB guanine nucleotide 84.6 3.6 0.00012 34.3 7.8 108 129-236 21-129 (135)
38 1deq_A Fibrinogen (alpha chain 84.0 24 0.00082 34.4 14.4 41 309-349 118-158 (390)
39 2eqb_B RAB guanine nucleotide 83.2 15 0.0005 28.8 13.1 57 135-191 7-63 (97)
40 3s4r_A Vimentin; alpha-helix, 82.7 15 0.00051 28.5 11.0 57 177-235 25-81 (93)
41 2v4h_A NF-kappa-B essential mo 79.9 21 0.00073 28.4 12.0 41 183-223 63-103 (110)
42 3jsv_C NF-kappa-B essential mo 79.6 20 0.00067 27.8 10.0 50 182-231 40-89 (94)
43 1deq_A Fibrinogen (alpha chain 79.1 42 0.0014 32.7 14.1 45 357-401 113-157 (390)
44 3i00_A HIP-I, huntingtin-inter 78.2 18 0.00062 29.5 9.8 45 150-197 18-62 (120)
45 2igp_A Retinoblastoma-associat 78.2 14 0.00049 30.1 9.3 93 12-127 21-118 (120)
46 1m1j_A Fibrinogen alpha subuni 78.1 59 0.002 32.5 16.4 47 309-355 116-162 (491)
47 1fxk_A Prefoldin; archaeal pro 77.9 23 0.00078 27.7 11.0 34 135-168 3-36 (107)
48 3u1c_A Tropomyosin alpha-1 cha 77.3 24 0.00084 27.7 14.4 91 140-237 9-99 (101)
49 1ci6_A Transcription factor AT 76.6 8.9 0.00031 27.5 6.7 42 125-166 15-56 (63)
50 3mq9_A Bone marrow stromal ant 76.3 62 0.0021 32.3 15.6 15 331-345 403-417 (471)
51 3u59_A Tropomyosin beta chain; 76.3 26 0.00089 27.5 14.2 42 362-403 56-97 (101)
52 2w83_C C-JUN-amino-terminal ki 76.2 21 0.00071 26.5 8.5 40 186-225 34-73 (77)
53 3bas_A Myosin heavy chain, str 74.3 27 0.00092 26.7 10.8 17 179-195 39-55 (89)
54 3tnu_B Keratin, type II cytosk 73.9 35 0.0012 27.9 13.3 10 364-373 82-91 (129)
55 3hhm_B NISH2 P85alpha; PI3KCA, 71.9 61 0.0021 31.7 13.7 77 176-252 199-278 (373)
56 2zqm_A Prefoldin beta subunit 71.1 37 0.0013 26.9 12.3 34 135-168 8-41 (117)
57 3hnw_A Uncharacterized protein 70.7 45 0.0016 27.8 15.6 21 242-262 25-45 (138)
58 1ic2_A Tropomyosin alpha chain 70.4 31 0.0011 25.8 9.3 53 202-254 12-64 (81)
59 2v66_B Nuclear distribution pr 68.3 45 0.0015 26.8 13.9 47 330-376 8-54 (111)
60 3s84_A Apolipoprotein A-IV; fo 68.0 78 0.0027 29.5 27.1 17 421-437 242-258 (273)
61 3mq7_A Bone marrow stromal ant 66.7 49 0.0017 26.6 11.4 39 204-242 72-110 (121)
62 2e7s_A RAB guanine nucleotide 66.4 35 0.0012 28.3 8.9 14 353-366 85-98 (135)
63 3swk_A Vimentin; cytoskeleton, 64.4 45 0.0015 25.4 10.0 52 186-237 25-76 (86)
64 3cvf_A Homer-3, homer protein 64.0 31 0.0011 25.9 7.4 17 149-165 22-38 (79)
65 3nmd_A CGMP dependent protein 63.2 31 0.0011 25.4 7.0 32 207-238 37-68 (72)
66 3tnu_A Keratin, type I cytoske 62.9 62 0.0021 26.5 12.6 9 421-429 116-124 (131)
67 4dzn_A Coiled-coil peptide CC- 62.8 16 0.00056 21.6 4.4 26 206-231 5-30 (33)
68 1m1j_B Fibrinogen beta chain; 62.6 1.3E+02 0.0046 30.2 14.7 22 95-118 70-91 (464)
69 1x79_B RAB GTPase binding effe 61.2 62 0.0021 25.9 12.8 68 324-391 37-104 (112)
70 3tnu_B Keratin, type II cytosk 60.8 67 0.0023 26.2 13.5 9 421-429 114-122 (129)
71 2v4h_A NF-kappa-B essential mo 60.3 63 0.0022 25.7 10.7 46 190-235 63-108 (110)
72 3s4r_A Vimentin; alpha-helix, 60.3 57 0.0019 25.2 11.4 27 140-166 16-42 (93)
73 3a7p_A Autophagy protein 16; c 59.7 80 0.0027 26.7 12.3 36 182-217 96-131 (152)
74 2eqb_B RAB guanine nucleotide 59.6 61 0.0021 25.3 12.2 57 138-194 3-59 (97)
75 2v66_B Nuclear distribution pr 59.4 67 0.0023 25.7 13.7 17 221-237 39-55 (111)
76 2ocy_A RAB guanine nucleotide 59.2 82 0.0028 26.7 19.8 65 309-376 56-120 (154)
77 4fla_A Regulation of nuclear P 59.1 82 0.0028 26.6 12.5 64 182-245 86-149 (152)
78 3a7p_A Autophagy protein 16; c 59.0 82 0.0028 26.6 10.0 29 208-236 101-129 (152)
79 2efr_A General control protein 58.2 86 0.003 26.6 21.6 69 359-427 72-150 (155)
80 2xdj_A Uncharacterized protein 58.1 58 0.002 24.6 9.3 33 199-231 23-55 (83)
81 2efr_A General control protein 57.7 88 0.003 26.6 21.9 52 176-227 43-94 (155)
82 1m1j_A Fibrinogen alpha subuni 57.5 1.6E+02 0.0054 29.4 14.0 46 357-402 111-156 (491)
83 1lq7_A Alpha3W; three helix bu 57.1 42 0.0015 22.9 6.3 21 358-378 26-46 (67)
84 3a2a_A Voltage-gated hydrogen 56.5 33 0.0011 23.7 5.7 36 204-239 12-47 (58)
85 3mq9_A Bone marrow stromal ant 56.3 1.6E+02 0.0055 29.2 14.9 25 216-240 442-466 (471)
86 3qh9_A Liprin-beta-2; coiled-c 54.5 66 0.0022 24.1 10.3 54 182-242 26-79 (81)
87 1f5n_A Interferon-induced guan 54.3 1.4E+02 0.005 31.0 13.3 112 296-407 465-582 (592)
88 3q8t_A Beclin-1; autophagy, AT 54.2 74 0.0025 24.7 12.8 45 185-229 7-51 (96)
89 2oto_A M protein; helical coil 54.0 98 0.0034 26.0 16.3 22 176-197 58-79 (155)
90 2b9c_A Striated-muscle alpha t 53.6 1E+02 0.0034 25.9 13.8 77 328-404 41-120 (147)
91 2no2_A HIP-I, huntingtin-inter 53.5 82 0.0028 25.0 15.0 59 336-394 33-91 (107)
92 1kd8_B GABH BLL, GCN4 acid bas 53.5 14 0.00049 23.1 3.2 27 213-239 4-30 (36)
93 3s9g_A Protein hexim1; cyclin 53.0 79 0.0027 24.6 8.9 37 124-160 19-57 (104)
94 3qh9_A Liprin-beta-2; coiled-c 52.6 71 0.0024 23.9 9.1 31 136-166 15-45 (81)
95 3mov_A Lamin-B1; LMNB1, B-type 52.2 72 0.0025 24.7 8.0 12 337-348 24-35 (95)
96 3lay_A Zinc resistance-associa 51.5 55 0.0019 28.5 8.0 29 386-414 114-142 (175)
97 3htk_A Structural maintenance 50.7 59 0.002 22.5 7.6 22 205-226 28-49 (60)
98 3vem_A Helicase protein MOM1; 49.9 98 0.0034 24.8 9.8 30 397-426 66-95 (115)
99 1s94_A S-syntaxin; three helix 49.8 1.1E+02 0.0039 26.1 10.1 26 136-161 39-64 (180)
100 2dq0_A Seryl-tRNA synthetase; 49.0 1.2E+02 0.004 30.5 11.3 29 138-166 29-57 (455)
101 3he5_B Synzip2; heterodimeric 48.9 52 0.0018 21.4 6.2 39 203-241 10-48 (52)
102 2wq1_A General control protein 48.8 29 0.001 21.3 4.0 26 213-238 3-28 (33)
103 3qne_A Seryl-tRNA synthetase, 48.0 1.2E+02 0.004 30.8 11.0 24 139-162 32-55 (485)
104 2p2u_A HOST-nuclease inhibitor 48.0 93 0.0032 26.8 9.0 59 373-434 18-76 (171)
105 2k48_A Nucleoprotein; viral pr 47.9 96 0.0033 24.4 7.9 39 210-248 35-73 (107)
106 1deb_A APC protein, adenomatou 47.0 64 0.0022 21.8 6.5 32 180-211 15-46 (54)
107 2yy0_A C-MYC-binding protein; 46.9 41 0.0014 23.1 5.2 29 140-168 19-47 (53)
108 3c3f_A Alpha/beta peptide with 46.3 33 0.0011 21.1 4.0 27 212-238 3-29 (34)
109 1l8d_A DNA double-strand break 46.3 1E+02 0.0036 24.0 12.3 16 333-348 25-40 (112)
110 1t2k_D Cyclic-AMP-dependent tr 44.9 77 0.0026 22.1 8.6 15 182-196 36-50 (61)
111 3htk_A Structural maintenance 44.5 75 0.0026 21.9 8.0 30 208-237 24-53 (60)
112 2ve7_A Kinetochore protein HEC 44.0 99 0.0034 29.4 9.4 37 11-47 70-111 (315)
113 1jnm_A Proto-oncogene C-JUN; B 43.6 44 0.0015 23.6 5.2 16 181-196 35-50 (62)
114 1kd8_A GABH AIV, GCN4 acid bas 43.0 20 0.00068 22.4 2.7 27 213-239 4-30 (36)
115 2lf0_A Uncharacterized protein 42.7 1.1E+02 0.0038 24.6 7.7 46 154-199 10-60 (123)
116 1go4_E MAD1 (mitotic arrest de 42.6 1.2E+02 0.0041 23.7 9.1 63 365-427 13-92 (100)
117 3vmx_A Voltage-gated hydrogen 42.5 75 0.0026 21.3 5.9 35 205-239 6-40 (48)
118 1go4_E MAD1 (mitotic arrest de 41.6 1.2E+02 0.0043 23.6 9.5 13 226-238 77-89 (100)
119 3oja_A Leucine-rich immune mol 41.6 2.7E+02 0.0093 27.5 17.2 13 225-237 443-455 (487)
120 3cve_A Homer protein homolog 1 41.5 1E+02 0.0035 22.6 9.2 20 147-166 14-33 (72)
121 3iv1_A Tumor susceptibility ge 41.4 1.1E+02 0.0037 22.8 9.5 26 193-218 36-61 (78)
122 1m1j_C Fibrinogen gamma chain; 41.2 2.1E+02 0.0072 28.3 11.4 33 208-240 103-135 (409)
123 1l8d_A DNA double-strand break 41.1 1.3E+02 0.0043 23.5 12.2 13 150-162 27-39 (112)
124 2lw1_A ABC transporter ATP-bin 40.7 1.2E+02 0.0039 23.0 8.5 43 218-260 23-71 (89)
125 2w83_C C-JUN-amino-terminal ki 40.6 1.1E+02 0.0037 22.7 10.0 49 177-225 11-59 (77)
126 1ses_A Seryl-tRNA synthetase; 39.3 1.3E+02 0.0043 29.9 9.6 28 139-166 27-54 (421)
127 2oxj_A Hybrid alpha/beta pepti 39.0 51 0.0017 20.3 4.0 27 212-238 3-29 (34)
128 2b9c_A Striated-muscle alpha t 38.7 1.7E+02 0.0059 24.4 10.9 58 207-264 63-120 (147)
129 3ra3_B P2F; coiled coil domain 38.2 24 0.00083 20.1 2.3 23 207-229 4-26 (28)
130 3m48_A General control protein 38.2 41 0.0014 20.7 3.5 25 214-238 4-28 (33)
131 3lay_A Zinc resistance-associa 38.0 70 0.0024 27.8 6.6 65 124-191 65-129 (175)
132 1ez3_A Syntaxin-1A; three heli 37.5 1.5E+02 0.0052 23.4 9.6 29 136-164 8-36 (127)
133 3viq_B Mating-type switching p 37.1 1.3E+02 0.0046 22.7 7.2 42 213-254 4-47 (85)
134 3m91_A Proteasome-associated A 36.8 99 0.0034 21.1 5.9 33 185-217 12-44 (51)
135 3s9g_A Protein hexim1; cyclin 36.3 1.5E+02 0.0051 23.0 8.2 22 145-166 35-56 (104)
136 3nmd_A CGMP dependent protein 36.3 1.3E+02 0.0043 22.1 6.6 31 210-240 33-63 (72)
137 3jsv_C NF-kappa-B essential mo 36.2 1.5E+02 0.0051 22.9 9.3 50 189-238 40-89 (94)
138 1uii_A Geminin; human, DNA rep 36.2 1.4E+02 0.0047 22.5 7.0 46 122-167 27-73 (83)
139 3c3g_A Alpha/beta peptide with 36.1 61 0.0021 19.9 4.0 25 214-238 4-28 (33)
140 2yy0_A C-MYC-binding protein; 36.1 53 0.0018 22.5 4.4 19 177-195 21-39 (53)
141 1hjb_A Ccaat/enhancer binding 36.0 1.1E+02 0.0037 23.3 6.5 32 176-207 44-75 (87)
142 1gu4_A CAAT/enhancer binding p 35.9 1.3E+02 0.0044 22.4 6.8 20 226-245 59-78 (78)
143 1wt6_A Myotonin-protein kinase 35.8 1.4E+02 0.0047 22.4 8.5 11 296-306 26-36 (81)
144 1m1j_B Fibrinogen beta chain; 35.7 3.5E+02 0.012 27.1 15.5 9 115-123 85-93 (464)
145 2xnx_M M protein, M1-BC1; cell 35.2 1.5E+02 0.0051 24.8 7.7 39 201-239 71-109 (146)
146 1uo4_A General control protein 35.1 52 0.0018 20.3 3.6 26 213-238 4-29 (34)
147 1wle_A Seryl-tRNA synthetase; 34.5 1.9E+02 0.0066 29.4 10.2 33 205-237 118-150 (501)
148 1lq7_A Alpha3W; three helix bu 34.2 70 0.0024 21.8 4.6 17 176-192 49-65 (67)
149 3m91_A Proteasome-associated A 34.0 1.1E+02 0.0038 20.8 6.8 27 209-235 22-48 (51)
150 2dq3_A Seryl-tRNA synthetase; 33.5 1.3E+02 0.0043 29.9 8.6 31 138-168 28-58 (425)
151 1gu4_A CAAT/enhancer binding p 33.2 1.3E+02 0.0043 22.4 6.4 28 176-203 44-71 (78)
152 1otr_A Protein CUE2; protein-p 33.0 26 0.0009 23.7 2.3 18 5-22 14-31 (49)
153 2bni_A General control protein 33.0 59 0.002 20.1 3.6 26 213-238 4-29 (34)
154 1hjb_A Ccaat/enhancer binding 32.9 1.6E+02 0.0055 22.3 7.4 22 226-247 59-80 (87)
155 3hhm_B NISH2 P85alpha; PI3KCA, 32.7 3.5E+02 0.012 26.2 15.0 51 190-240 199-249 (373)
156 2wt7_A Proto-oncogene protein 32.5 1.3E+02 0.0044 21.1 8.5 26 177-202 32-57 (63)
157 1gd2_E Transcription factor PA 32.4 98 0.0034 22.5 5.5 10 185-194 32-41 (70)
158 1wt6_A Myotonin-protein kinase 31.8 1.6E+02 0.0055 22.0 8.8 12 183-194 39-50 (81)
159 2i1j_A Moesin; FERM, coiled-co 30.9 1.6E+02 0.0054 30.5 9.1 21 107-127 270-290 (575)
160 3cl3_D NF-kappa-B essential mo 30.1 1.2E+02 0.0042 24.7 6.2 54 205-258 18-71 (130)
161 4etp_A Kinesin-like protein KA 29.7 1.1E+02 0.0039 30.0 7.4 33 205-237 26-58 (403)
162 4fi5_A Nucleoprotein; structur 29.6 2.1E+02 0.0072 22.7 7.6 36 213-248 25-60 (113)
163 1fxk_A Prefoldin; archaeal pro 29.6 1.9E+02 0.0065 22.1 11.5 19 240-258 59-77 (107)
164 3l4q_C Phosphatidylinositol 3- 29.4 2.7E+02 0.0093 23.9 17.7 60 176-235 90-149 (170)
165 4emc_A Monopolin complex subun 29.4 2.9E+02 0.0098 24.1 9.5 37 176-212 21-57 (190)
166 3etw_A Adhesin A; antiparallel 28.8 2.3E+02 0.0078 22.9 11.9 27 401-427 73-99 (119)
167 3iv1_A Tumor susceptibility ge 28.6 1.8E+02 0.0062 21.6 10.0 25 191-215 48-72 (78)
168 3lss_A Seryl-tRNA synthetase; 28.0 3.3E+02 0.011 27.5 10.5 26 139-164 36-61 (484)
169 3qne_A Seryl-tRNA synthetase, 28.0 2.2E+02 0.0074 28.9 9.2 31 207-237 75-105 (485)
170 2dq0_A Seryl-tRNA synthetase; 27.0 2.1E+02 0.0072 28.6 8.9 28 208-235 74-101 (455)
171 3mq7_A Bone marrow stromal ant 26.9 2.4E+02 0.0084 22.5 15.3 25 358-382 72-96 (121)
172 1ses_A Seryl-tRNA synthetase; 26.7 2.8E+02 0.0095 27.4 9.7 31 206-236 67-97 (421)
173 1sjj_A Actinin; 3-helix bundle 26.2 6.2E+02 0.021 27.0 35.0 402 15-437 73-598 (863)
174 2pjw_V Vacuolar protein sortin 26.2 2E+02 0.0067 22.1 6.5 55 387-441 35-89 (91)
175 1wlq_A Geminin; coiled-coil; 2 26.0 1.9E+02 0.0065 21.7 6.2 44 123-166 20-64 (83)
176 3efg_A Protein SLYX homolog; x 25.8 1.3E+02 0.0044 22.3 5.3 16 205-220 44-59 (78)
177 2w6a_A ARF GTPase-activating p 25.3 1.8E+02 0.0061 20.4 6.9 9 152-160 25-33 (63)
178 2ic6_A Nucleocapsid protein; h 24.6 2.2E+02 0.0074 21.2 7.7 38 211-248 6-43 (78)
179 2lw1_A ABC transporter ATP-bin 24.6 2.1E+02 0.0072 21.4 6.6 51 380-430 24-76 (89)
180 2hy6_A General control protein 24.4 1.2E+02 0.004 18.7 3.8 23 215-237 6-28 (34)
181 3ci9_A Heat shock factor-bindi 24.0 1.6E+02 0.0053 19.8 4.9 40 402-441 5-44 (48)
182 1t6f_A Geminin; coiled-coil, c 23.9 1.4E+02 0.0047 18.7 4.3 26 212-237 9-34 (37)
183 2wt7_B Transcription factor MA 23.7 2.5E+02 0.0084 21.5 10.5 38 176-213 49-86 (90)
184 2l7b_A Apolipoprotein E, APO-E 23.4 1.5E+02 0.0051 28.1 6.7 201 206-437 66-291 (307)
185 2a3d_A Protein (de novo three- 23.1 84 0.0029 21.8 3.5 67 360-430 5-71 (73)
186 2lnh_A N-WAsp, neural wiskott- 23.0 56 0.0019 23.5 2.7 30 12-44 25-55 (65)
187 1jcd_A Major outer membrane li 22.9 1.9E+02 0.0064 19.8 7.1 11 205-215 34-44 (52)
188 3ljm_A Coil Ser L9C; de novo d 22.7 1.2E+02 0.0042 17.6 4.3 23 329-351 5-27 (31)
189 2dgc_A Protein (GCN4); basic d 22.5 1.4E+02 0.0047 21.1 4.7 20 177-196 39-58 (63)
190 2i1j_A Moesin; FERM, coiled-co 22.4 95 0.0033 32.2 5.5 19 108-126 274-292 (575)
191 2z5i_A TM, general control pro 22.3 77 0.0026 21.6 3.2 41 216-256 4-44 (52)
192 1gk4_A Vimentin; intermediate 22.3 2.4E+02 0.0084 20.9 12.3 76 141-226 2-77 (84)
193 3vp9_A General transcriptional 21.8 2.7E+02 0.0094 21.3 7.2 48 331-378 42-89 (92)
194 3kbt_A Beta-I spectrin, spectr 21.1 4.7E+02 0.016 23.8 29.0 57 329-385 260-317 (326)
195 2ic9_A Nucleocapsid protein; h 21.1 2.9E+02 0.0099 21.3 7.6 37 212-248 7-43 (96)
196 2efl_A Formin-binding protein 21.1 4.6E+02 0.016 23.7 20.6 16 287-302 212-227 (305)
197 3viq_B Mating-type switching p 21.0 2.7E+02 0.0093 21.0 7.7 24 145-168 6-29 (85)
198 3swy_A Cyclic nucleotide-gated 20.9 1.9E+02 0.0066 19.2 5.0 14 181-194 4-17 (46)
199 3efg_A Protein SLYX homolog; x 20.6 2.6E+02 0.0089 20.6 7.0 21 329-349 11-31 (78)
200 1wle_A Seryl-tRNA synthetase; 20.5 6.7E+02 0.023 25.3 12.7 25 139-163 69-93 (501)
201 3q0x_A Centriole protein; cent 20.4 3.9E+02 0.013 24.0 8.4 42 330-371 169-213 (228)
202 2es9_A Putative cytoplasmic pr 20.1 48 0.0016 25.6 1.9 41 11-52 38-85 (115)
203 2pjw_H Uncharacterized protein 20.0 2.9E+02 0.0098 21.0 6.3 51 387-437 37-87 (88)
204 4etp_A Kinesin-like protein KA 20.0 2E+02 0.0068 28.3 7.0 6 210-215 52-57 (403)
205 2e50_A Protein SET; histone ch 20.0 3E+02 0.01 24.7 7.7 37 390-426 31-67 (225)
No 1
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=100.00 E-value=3.9e-41 Score=319.54 Aligned_cols=166 Identities=20% Similarity=0.333 Sum_probs=142.3
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCCC-----CCChhhh-CCCChhHHHHHHHHHH-HHhcccCcccchhcchHhhhcCCCch
Q 013334 1 MSKFDYPRLSATEIVTILTETEIA-----VITENDL-KNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPD 73 (445)
Q Consensus 1 ms~~~FP~l~~~EIv~~L~~~~i~-----~~t~~dl-~~Pt~~~v~~ly~~~l-~~~~~~~~e~~~~~~~~~~~~l~~pe 73 (445)
||+|+||+|+++|||+||++|||+ +||++|| .||||++|++||++|| .+||++.++... + +....++||+
T Consensus 6 ms~~~FP~L~~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~~-~--~~~~~~~~pe 82 (250)
T 2ve7_C 6 METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYM-M--PVNSGVMYPH 82 (250)
T ss_dssp ---CCCCCCCHHHHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGSC-C--CSSCCCSCGG
T ss_pred cccCCCCCCCHHHHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHhc-c--chhhcccChh
Confidence 899999999999999999999995 5999999 8999999999999999 899998765432 2 2334678999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCcchHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhHHHHHHHHH
Q 013334 74 LHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEYFLSAILNFCLYKDTKMNLLRPIAEDLTRLDEQRSELE 153 (445)
Q Consensus 74 ~~~~s~~~l~~~~~~~~~l~~~gv~~DFt~~DL~~P~~~R~~~iLSalINF~rFre~~~~~~~~~~~e~~~l~~~~~~l~ 153 (445)
+|.+|+++++||++|++||..|||+ |||++||++|+|+||+++|||||||++||++++..+++++.+++.+.++.+++.
T Consensus 83 l~~~si~~l~~~r~l~~~l~~~gv~-DFtl~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~ 161 (250)
T 2ve7_C 83 LMEGFLPFSNLVTHLDSFLPICRVN-DFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLN 161 (250)
T ss_dssp GGTTTHHHHHHHHHHHHHHHHTTCC-CCCHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCC-CCcHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999988888888887
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013334 154 DKISQLNAEIAAYNEVR 170 (445)
Q Consensus 154 ~~i~~l~~~~~~~~~~~ 170 (445)
+++..++.+|++++..+
T Consensus 162 ~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 162 AAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666666554443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.51 E-value=0.00072 Score=63.12 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q 013334 410 AKLQELASKAEEIVEKFQQYTNSI 433 (445)
Q Consensus 410 ~ei~~i~~~y~~l~~~~~~Y~~~~ 433 (445)
.++..+...+..+...++.+.+.|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 258 DELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555666655555554444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.05 E-value=1.2e-05 Score=92.00 Aligned_cols=10 Identities=0% Similarity=0.059 Sum_probs=6.0
Q ss_pred HHHHHHHcCC
Q 013334 88 VKEVVTTVNC 97 (445)
Q Consensus 88 ~~~~l~~~gv 97 (445)
|..++..+|+
T Consensus 752 ~~~lL~~l~l 761 (1184)
T 1i84_S 752 CILMIKALEL 761 (1184)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHcCC
Confidence 5566666665
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.88 E-value=3.8e-05 Score=87.93 Aligned_cols=8 Identities=13% Similarity=0.605 Sum_probs=3.5
Q ss_pred HHHHHHhh
Q 013334 13 EIVTILTE 20 (445)
Q Consensus 13 EIv~~L~~ 20 (445)
+++.+|..
T Consensus 607 ~~~~ll~~ 614 (1184)
T 1i84_S 607 NVTSLLNQ 614 (1184)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 44444443
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.16 E-value=0.11 Score=46.15 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHH
Q 013334 150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK----FSQTEFD 225 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~----l~~~~~~ 225 (445)
..+..++.+++.+++++.. .......+|++++..++..+..|...-..|..+++.+|.+....... ++.+..+
T Consensus 20 ~~~~q~~~~le~El~EFqe---sSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~e 96 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQE---GSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD 96 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555532 12223445566666666666666666666666666666555555444 4444444
Q ss_pred HHHHHHHHHHHHhhh
Q 013334 226 LVQSVQQNADLRSKI 240 (445)
Q Consensus 226 l~~l~qe~~~L~~~I 240 (445)
+..+...+..|..+|
T Consensus 97 l~~l~~~~~~l~~~i 111 (189)
T 2v71_A 97 LSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444444433
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.91 E-value=0.21 Score=46.91 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334 361 DATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 426 (445)
Q Consensus 361 el~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~ 426 (445)
++...+..++.++.....+++.. +..+.+++..+..+...+...... .+...|.+|....
T Consensus 129 ~~~~~l~~~~~~l~~~~~~~~~~---~~e~~~e~~~l~~~r~~l~~~i~~---~lL~~Yerir~~~ 188 (256)
T 3na7_A 129 DLKKEMLELEKLALELESLVENE---VKNIKETQQIIFKKKEDLVEKTEP---KIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhC
Confidence 33344444444444443333332 223344455555555555555543 5677888888754
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.82 E-value=0.16 Score=47.61 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 013334 332 AKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKR 377 (445)
Q Consensus 332 ~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~ 377 (445)
..+..++.++..++..+.....+.+..+.++..++..+..+.....
T Consensus 125 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~ 170 (256)
T 3na7_A 125 EKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLV 170 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566666666666666555544444443
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.38 E-value=1.7 Score=54.25 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=31.2
Q ss_pred hHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHH
Q 013334 135 LRPIAEDLTRLDE-QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK 196 (445)
Q Consensus 135 ~~~~~~e~~~l~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~ 196 (445)
|-+++.-|..+.. ++.++.....++...++.+.... ..|.++..+..+++.+|.+-++
T Consensus 1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~----~~V~~l~~~L~~~~~~L~~k~~ 1955 (3245)
T 3vkg_A 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTE----AQVKDLQVSLAQKNRELDVKNE 1955 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665543 45556666666666666554432 2455555555555555544433
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.99 E-value=0.23 Score=39.72 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013334 150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 229 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l 229 (445)
..++.++..|+.+......+.+.....+.+.+.++..+..++..|++.-..+..+++.+..........++..+......
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444445566667777888888888888877788888888888888888888888888888
Q ss_pred HHHHHHHHhhh
Q 013334 230 VQQNADLRSKI 240 (445)
Q Consensus 230 ~qe~~~L~~~I 240 (445)
+.++..|..+|
T Consensus 85 E~ev~~L~Rri 95 (101)
T 3u1c_A 85 ESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887665
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.56 E-value=0.42 Score=38.12 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013334 151 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV 230 (445)
Q Consensus 151 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~ 230 (445)
.++.++..|+.+......+.+.....+.+.+.....+..++..|++.-..+..+++.+.........+++..+......+
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444445556667777777888888887778888888888888888888888888888888
Q ss_pred HHHHHHHhhh
Q 013334 231 QQNADLRSKI 240 (445)
Q Consensus 231 qe~~~L~~~I 240 (445)
.++..|..+|
T Consensus 86 ~evasLnRri 95 (101)
T 3u59_A 86 AEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.17 E-value=7.1 Score=48.84 Aligned_cols=16 Identities=0% Similarity=0.102 Sum_probs=6.6
Q ss_pred hcHHHHHHHHHHHHHH
Q 013334 407 SGAAKLQELASKAEEI 422 (445)
Q Consensus 407 ~~e~ei~~i~~~y~~l 422 (445)
.-...+..+...+..|
T Consensus 2088 RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc
Confidence 3333444444444443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.82 E-value=0.77 Score=51.82 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 209 KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 209 k~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
+..+..|..++.++...+...+.+...|..++..-.+.+...+.+++..+
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l 969 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344555555555555555455555555444333344444444443333
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.13 E-value=2.4 Score=36.76 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013334 144 RLDEQRSELEDKISQLNAE 162 (445)
Q Consensus 144 ~l~~~~~~l~~~i~~l~~~ 162 (445)
.+...+..++..+..|+..
T Consensus 59 ~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344344433333
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.80 E-value=2.6 Score=42.81 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 295 QMQAILEQVNSAK-SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNL 357 (445)
Q Consensus 295 ~l~~~~e~~~~~k-~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~ 357 (445)
+..+.....+.+- ++++.+..|+.+++.+-..++.|+..|+++..+|++|+-....+......
T Consensus 100 q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 100 SANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333344444 57777888888888777777889999999999999998888876666554
No 15
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=93.75 E-value=1.6 Score=42.15 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCC-CCChhhhCCCChhHHHHHHHHHHHHhc
Q 013334 12 TEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLD 51 (445)
Q Consensus 12 ~EIv~~L~~~~i~-~~t~~dl~~Pt~~~v~~ly~~~l~~~~ 51 (445)
.+|..+|...|++ .+|...|..||.--...||.+++.+++
T Consensus 19 ~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~id 59 (315)
T 2ve7_A 19 RQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLC 59 (315)
T ss_dssp HHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcC
Confidence 5788888888885 399999999999999999998886665
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.98 E-value=4.6 Score=35.76 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 204 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 204 ~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
....+..+.+.+......+...+..+++.++.|+..
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 466666777777777777777777888888888744
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.80 E-value=2.7 Score=47.46 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 143 TRLDEQRSELEDKISQLNAEIAAYNEVRERELP----LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEK 218 (445)
Q Consensus 143 ~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~----~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~ 218 (445)
..+......++.++.+|+..+++.......... ....+..++..|+..+.++.... .+....+.+...+..+
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~----~e~~~~~~~v~~L~~e 992 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE----EEAKNATNRVLSLQEE 992 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 333344455555555555554443332221111 11334556666666555555432 2333444555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 219 FSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 219 l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
+++++.++.++..+...++....+..++|+..+..+++..
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544455555555554443
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.60 E-value=3.6 Score=33.63 Aligned_cols=94 Identities=16% Similarity=0.307 Sum_probs=45.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 137 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 216 (445)
Q Consensus 137 ~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~ 216 (445)
++...++.+......+..++..++...++++.+-+.+......++.++..|+..+-..+=....|...++.+++
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e------ 97 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE------ 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH------
Confidence 34444555555555666666666666677666555444444444444444443333332222222222222222
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 217 EKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 217 ~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
++.|....-.+|+..|+++|
T Consensus 98 ----El~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 98 ----EIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp ----HHHHHHHHHHHHHHHHHSCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHh
Confidence 22333334456777776665
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.37 E-value=2.8 Score=31.77 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 143 TRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 143 ~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
+.|.++..++-+.|.-|+.++++++.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKe 34 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666555544
No 20
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=91.69 E-value=0.34 Score=45.34 Aligned_cols=161 Identities=13% Similarity=0.081 Sum_probs=72.3
Q ss_pred HHHHHcCCC----CCCCcccc-cCCCcchHHHHHHHHHH-HHhhHhhhhhhh------------HHHHHHHHhHHHHH--
Q 013334 90 EVVTTVNCP----MNFTLKDL-IRPDATRTEYFLSAILN-FCLYKDTKMNLL------------RPIAEDLTRLDEQR-- 149 (445)
Q Consensus 90 ~~l~~~gv~----~DFt~~DL-~~P~~~R~~~iLSalIN-F~rFre~~~~~~------------~~~~~e~~~l~~~~-- 149 (445)
..+..||++ ++||..|| .+|+|.-++.++..++= |+.++-+-.... .+...-.. +....
T Consensus 21 ~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~~l~-~~r~l~~ 99 (250)
T 2ve7_C 21 IHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLPFSN-LVTHLDS 99 (250)
T ss_dssp HHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHHHHH-HHHHHHH
T ss_pred HHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHHHHH-HHHHHHH
Confidence 556777874 14888999 69999999998888776 666643322100 00000000 00000
Q ss_pred ------------HHH----HHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 150 ------------SEL----EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 213 (445)
Q Consensus 150 ------------~~l----~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~ 213 (445)
..+ -.++..+-..+=.+-.-++......+++..+.+++..++..+......+..+++.++.+..
T Consensus 100 ~l~~~gv~DFtl~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 100 FLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHTTCCCCCHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHcCCCCCcHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 1122222222222222222223344455555555555555555554455555555555555
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 013334 214 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 251 (445)
Q Consensus 214 ~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l 251 (445)
+....+........++...+.+++-....+|+.++..+
T Consensus 180 e~~te~~p~~k~~~qly~~vt~i~w~~~~~~~~i~g~~ 217 (250)
T 2ve7_C 180 EDTTVTIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIH 217 (250)
T ss_dssp ------CTTTHHHHHHHHHHHCCEECSCCTTTCEEEEC
T ss_pred hhhhhhhHHHHHHHHHHHHHhhceeecccCcchhceee
Confidence 55555444444455556666666666666666655433
No 21
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.06 E-value=5.9 Score=32.82 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013334 202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN 233 (445)
Q Consensus 202 ~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~ 233 (445)
...+..+...+.++...+..+...+......+
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~ 99 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMN 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 22
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=90.86 E-value=11 Score=35.49 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013334 180 VDAKVKELRQTIQDLNK-HQVSLRTTLNKLKEKTGA 214 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~-~q~~l~~~~~~lk~e~~~ 214 (445)
+..++.+++.+|.-+.. .+..+....+.++....-
T Consensus 42 l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p 77 (273)
T 3s84_A 42 IGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTP 77 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33455555555544432 222334444444444433
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.61 E-value=4.6 Score=42.02 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=2.2
Q ss_pred hHHHHH
Q 013334 113 RTEYFL 118 (445)
Q Consensus 113 R~~~iL 118 (445)
|....+
T Consensus 403 ~~~~~l 408 (597)
T 3oja_B 403 RLLQYI 408 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333333
No 24
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=90.20 E-value=3.5 Score=33.25 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=41.4
Q ss_pred HHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 169 VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 169 ~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
+.+...+.|..|......-++.|.+|.+. +..-...+..+..+|...-+.+..++.++..+++.|..
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~---fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQQG---LSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 55667778888888888888888888665 44445667778888888888888888889999888873
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.14 E-value=8.2 Score=32.97 Aligned_cols=106 Identities=20% Similarity=0.279 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013334 133 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQD-LNKHQVSLRTTLNKLKEK 211 (445)
Q Consensus 133 ~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~-l~~~q~~l~~~~~~lk~e 211 (445)
..++...+++..+..+......++..|...+.+-...+..-+.....++.++.+|.+.|.+ -|+--..-+.....+..+
T Consensus 37 ~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r 116 (154)
T 2ocy_A 37 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL 116 (154)
T ss_dssp HTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555555555554444444344555566666666666533 233333333444444444
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 212 TGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 212 ~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
...+..++.+....+..+..+...|+.
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555443
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.64 E-value=4.6 Score=30.57 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
.+|+++|.++-..|.-+.. .+.+|..+|..|.++..++......+..+...++.+......+|.
T Consensus 9 eqLE~KIq~avdtI~lLqm-------EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQM-------EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444433322 344455555555555555444444444444444444444444443
No 27
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.38 E-value=9.9 Score=32.87 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHH
Q 013334 358 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEE 421 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~ 421 (445)
.+.++..++..|..+++...............+...+..++...+.+.-+..-+++.+...|..
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555555566666666666666666655555566666665543
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.82 E-value=8.5 Score=31.38 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 013334 311 KDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAV 390 (445)
Q Consensus 311 ~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~ 390 (445)
..+..|+.++..-......+...+..++.-++.++.+++..... ....+..+..++..+... --..-.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~----r~~~E~di~~lrK~lD~~-------~l~r~dL 88 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ----REEAENTLQSFRQDVDNA-------SLARLDL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHhhhcccHH-------HHHHHHH
Confidence 34455566665555555566666777777667666665543322 223334444444444322 2222346
Q ss_pred HHHHHHHHhhHHHHHHhcHHHHHHHH
Q 013334 391 VTEVDAITSKTKFVKESGAAKLQELA 416 (445)
Q Consensus 391 ~~~v~~le~~~~~~~~~~e~ei~~i~ 416 (445)
+.++..+..++.-++..|+.|+..+.
T Consensus 89 E~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 89 ERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888899999999988764
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.79 E-value=5.6 Score=30.55 Aligned_cols=76 Identities=17% Similarity=0.353 Sum_probs=42.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 136 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK 211 (445)
Q Consensus 136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e 211 (445)
.++...++.+......+..++..++....+++.+-+.+....+.++.++..|+..+-.+.=....|...++.++++
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666777777777777666665555555555555555554444443333333333333333
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.41 E-value=6.1 Score=29.88 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013334 154 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 222 (445)
Q Consensus 154 ~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~ 222 (445)
.++..|..+......+.......+.+.+.....+..++..|++.-..+..+++.+.........+|+..
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333222222233344455555566666666665666666666666666666555543
No 31
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.19 E-value=5.6 Score=30.01 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=37.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 236 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L 236 (445)
.++.++.+|..|+.++..+...-+.-..+.+.++.+...+...+.-.-+++..+++-+.+|
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3455556666666666666665555555566666666666666666666666666666655
No 32
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.42 E-value=6.9 Score=28.96 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 236 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L 236 (445)
.++.+|..|+.++..+...-+.-..+...++.+...+...+.-.-+++..+++...+|
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3344455555555555444444444444445555555555555555555555555544
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=87.09 E-value=6 Score=32.40 Aligned_cols=93 Identities=9% Similarity=0.077 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH------H
Q 013334 332 AKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV------K 405 (445)
Q Consensus 332 ~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~------~ 405 (445)
..++.|+..++.|+..++....+....+.++...+..|..+++...+.........+.+..++..+.....+. -
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~ 94 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSL 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455677777777777777788888888888888888888888876554444444555555555443322211 1
Q ss_pred HhcHHHHHHHHHHHHHHHH
Q 013334 406 ESGAAKLQELASKAEEIVE 424 (445)
Q Consensus 406 ~~~e~ei~~i~~~y~~l~~ 424 (445)
..++...+..+..|.+|.+
T Consensus 95 ~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 95 SEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555655543
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.03 E-value=4.3 Score=41.21 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013334 150 SELEDKISQLNAEIAAY 166 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~ 166 (445)
..+..+|+.|+.+++++
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.54 E-value=13 Score=30.77 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013334 148 QRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 148 ~~~~l~~~i~~l~~~~~~~ 166 (445)
.+..+..+...+..+.+++
T Consensus 35 ~r~ele~~~~~l~~Ek~~L 53 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDL 53 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 36
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=86.19 E-value=11 Score=29.60 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013334 144 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE 223 (445)
Q Consensus 144 ~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~ 223 (445)
.+......+...-+.+..++..+.. ....+..++..++.+...+...-..+-.+++.++-+..++.+++.++.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEk-------e~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEK-------NRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444422 223455667777777777777777777888888888888888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 013334 224 FDLVQSVQQNADLRS 238 (445)
Q Consensus 224 ~~l~~l~qe~~~L~~ 238 (445)
..+.-.....++|+.
T Consensus 81 ~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 81 NQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 888877777777764
No 37
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.55 E-value=3.6 Score=34.29 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=46.9
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013334 129 DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL-NKHQVSLRTTLNK 207 (445)
Q Consensus 129 e~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l-~~~q~~l~~~~~~ 207 (445)
..+...|+.+..+++.+.........++..|...+.+-...+..-+.....++.++.+|.+.|.+= |+--..-+.....
T Consensus 21 ~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~ 100 (135)
T 2e7s_A 21 KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYA 100 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554444445555555555555444444333334455666666666666332 3332233333444
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNADL 236 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L 236 (445)
+..+...+...+.+.+..+..+..+...|
T Consensus 101 ~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 101 IEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=84.04 E-value=24 Score=34.40 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 309 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ 349 (445)
Q Consensus 309 ~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~ 349 (445)
+++.+..+|.++.++-..++.|+.-++.+..+|++|+....
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777666777888888888888888887774
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.22 E-value=15 Score=28.79 Aligned_cols=57 Identities=23% Similarity=0.436 Sum_probs=28.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334 135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 191 (445)
Q Consensus 135 ~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L 191 (445)
|+...+++..+..+......++..|...+.+-...+..-+.....++.++.+|.+.|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544444333334444555555555544
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=82.69 E-value=15 Score=28.52 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=26.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 235 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~ 235 (445)
|..|++.|+.|+.++..+..... ......+..++..+...|..+..+-..+.-++.+
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665544321 1222333444444444444444443333333333
No 41
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.91 E-value=21 Score=28.44 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013334 183 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTE 223 (445)
Q Consensus 183 e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~ 223 (445)
.+.-|+++..-+..--.+-+...+++-.++.++..++..+.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 45566666665655555555666666666655555554443
No 42
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=79.60 E-value=20 Score=27.85 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 231 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~q 231 (445)
..+.-|++...-+..--.+-+.+.+++..++.++...+..+...+..+.+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655555666666666666666655555444444433
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.13 E-value=42 Score=32.71 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhH
Q 013334 357 LKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT 401 (445)
Q Consensus 357 ~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~ 401 (445)
+..+++++.|.-++..|......+..++..++....++..||..|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777766666666666666666666666666
No 44
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.25 E-value=18 Score=29.48 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHH
Q 013334 150 SELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKH 197 (445)
Q Consensus 150 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~ 197 (445)
..|+.++..|+.+++.+.. ...+.+.++...+..|+++|......
T Consensus 18 e~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 18 ERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554422 23345677777777777777666543
No 45
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=78.19 E-value=14 Score=30.07 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCC-CCChhhhCCCChhHHHHHHHHHHHHhcccCcccchhcchHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 013334 12 TEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKE 90 (445)
Q Consensus 12 ~EIv~~L~~~~i~-~~t~~dl~~Pt~~~v~~ly~~~l~~~~~~~~e~~~~~~~~~~~~l~~pe~~~~s~~~l~~~~~~~~ 90 (445)
.+|.++|...|++ .+|...|..||.--...||..++.+++-.. .++ +.-+++-+ -.
T Consensus 21 ~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~-------~~~-------~~~~eeev---------~~ 77 (120)
T 2igp_A 21 RQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSY-------ELP-------DTKFEEEV---------PR 77 (120)
T ss_dssp HHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTC-------CCC-------CTTHHHHH---------HH
T ss_pred HHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCC-------ccC-------CCChHHHH---------HH
Confidence 5788888888885 389999999999888888887776554321 121 01122212 26
Q ss_pred HHHHcCCCCCCCcccccCCCcch----HHHHHHHHHHHHhh
Q 013334 91 VVTTVNCPMNFTLKDLIRPDATR----TEYFLSAILNFCLY 127 (445)
Q Consensus 91 ~l~~~gv~~DFt~~DL~~P~~~R----~~~iLSalINF~rF 127 (445)
+|+.+|.|-..|=+-|..|.+.+ +.-.|+=|+.+++|
T Consensus 78 ~lK~L~YP~~isKS~L~a~g~pHsWp~~L~~L~WLvel~~~ 118 (120)
T 2igp_A 78 IFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKI 118 (120)
T ss_dssp HHHHTTCCSCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCceeCHHHhcCCCCCccHHHHHHHHHHHHHHHHh
Confidence 77888887344445677786655 45555555666655
No 46
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=78.05 E-value=59 Score=32.49 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 309 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKER 355 (445)
Q Consensus 309 ~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~ 355 (445)
+++.+.-+|.+++++-..+..|+..++.+..+|++|+..........
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~C 162 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRAC 162 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666677777777666677888888888888999888877655443
No 47
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.90 E-value=23 Score=27.69 Aligned_cols=34 Identities=9% Similarity=0.193 Sum_probs=20.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 135 ~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
+...+..+..+..+...+...+..+..++.++..
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~ 36 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQK 36 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665555544
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.31 E-value=24 Score=27.70 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 219 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l 219 (445)
.....+..+.....++...+...+........ +++.++..|..++..+...-..+...+...+.....-....
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~-------~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSK-------QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444454444444444333322 33344444444444444333334444555555555555555
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 013334 220 SQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 220 ~~~~~~l~~l~qe~~~L~ 237 (445)
...+..+..+...+.-|+
T Consensus 82 ~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 82 AKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 666666666666655443
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.55 E-value=8.9 Score=27.49 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=24.0
Q ss_pred HhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 125 CLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 125 ~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
.+||.-+......+..+...|..+..+|..++..|..++..+
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666555555555555555555444433
No 50
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.34 E-value=62 Score=32.30 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013334 331 EAKLIERQGKVEQLD 345 (445)
Q Consensus 331 ~~kl~e~q~k~e~l~ 345 (445)
|++|.+.+.....++
T Consensus 403 ~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 403 QQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHH
Confidence 333334433333333
No 51
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.30 E-value=26 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 013334 362 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 403 (445)
Q Consensus 362 l~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~ 403 (445)
+...+..+.+.+......++.........++.|..|.+.|.-
T Consensus 56 lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 56 TEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444455566666555543
No 52
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=76.19 E-value=21 Score=26.51 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 186 ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 225 (445)
Q Consensus 186 ~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~ 225 (445)
+|-+++-+|...++.|..++..+..-++++..++.+++.+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555544443
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=74.31 E-value=27 Score=26.74 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013334 179 EVDAKVKELRQTIQDLN 195 (445)
Q Consensus 179 el~~e~~~L~~~L~~l~ 195 (445)
+++..+..|.++-..|.
T Consensus 39 ele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 54
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.90 E-value=35 Score=27.91 Aligned_cols=10 Identities=0% Similarity=0.195 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 013334 364 RAFENVKLEM 373 (445)
Q Consensus 364 ~~~~~lkee~ 373 (445)
..+..+..++
T Consensus 82 ~~i~~lE~eL 91 (129)
T 3tnu_B 82 NKLAELEEAL 91 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 3333333333
No 55
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=71.89 E-value=61 Score=31.73 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=41.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh---hhcCHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK---IVQSPEKLQRTLE 252 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~---Iv~SPe~lk~~l~ 252 (445)
.++.+...+..|+++|.++......|..++..-....-++..+++.+.-.+..+....++.-.- ---+|++++..|.
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~L~ 278 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLG 278 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 4456667777788888887777777777777777777777777777776666655544443211 1225555555553
No 56
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.10 E-value=37 Score=26.90 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=20.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 135 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 135 ~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
....+..+..+..+...+...+..+..++.++..
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666665544
No 57
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.67 E-value=45 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=12.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHH
Q 013334 242 QSPEKLQRTLEEKKSIREEAR 262 (445)
Q Consensus 242 ~SPe~lk~~l~e~k~~~~~l~ 262 (445)
.||+.|+..-.-.-..+.+++
T Consensus 25 e~ee~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFN 45 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 356667766555555555555
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.38 E-value=31 Score=25.80 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 013334 202 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 254 (445)
Q Consensus 202 ~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~ 254 (445)
..+.+....+...+..++...+.....+.+++..|..+|..--+.|-..-+.+
T Consensus 12 k~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 12 KLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444455555444444333333333333
No 59
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.32 E-value=45 Score=26.75 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 013334 330 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK 376 (445)
Q Consensus 330 L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~ 376 (445)
|+.+...+...++.++.++.+...+....+..+...+..++......
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l 54 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQL 54 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444555555555555555555555554444433
No 60
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=68.02 E-value=78 Score=29.47 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=4.3
Q ss_pred HHHHHHHHhHhhhhhhc
Q 013334 421 EIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 421 ~l~~~~~~Y~~~~~~~~ 437 (445)
.|+..++-|..+|...+
T Consensus 242 ~l~~~l~~~~~~~~~~~ 258 (273)
T 3s84_A 242 QLRQKLGPHAGDVEGHL 258 (273)
T ss_dssp HHHHHHSCC--------
T ss_pred HHHHHhCcchhhHHhhh
Confidence 44444455555544433
No 61
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.67 E-value=49 Score=26.59 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 013334 204 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 242 (445)
Q Consensus 204 ~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~ 242 (445)
.+.++..++..|..+|.++..++.+++.++..|..+|..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 355556666666666666666666666666666665543
No 62
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.43 E-value=35 Score=28.33 Aligned_cols=14 Identities=29% Similarity=0.076 Sum_probs=6.1
Q ss_pred HHHhhhHHHHHHHH
Q 013334 353 KERNLKSEDATRAF 366 (445)
Q Consensus 353 ~e~~~~~eel~~~~ 366 (445)
.+.+.+..+.++..
T Consensus 85 eEAN~MVa~ar~~~ 98 (135)
T 2e7s_A 85 DEANNLVADARMEK 98 (135)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 63
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.38 E-value=45 Score=25.36 Aligned_cols=52 Identities=8% Similarity=0.110 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 186 ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 186 ~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
.++..+..++...+.-......+..+...+...+..+....+.++..++.|.
T Consensus 25 n~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 25 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333344333333333333344444444444444444444444444444
No 64
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.97 E-value=31 Score=25.87 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013334 149 RSELEDKISQLNAEIAA 165 (445)
Q Consensus 149 ~~~l~~~i~~l~~~~~~ 165 (445)
...++.++..++..+++
T Consensus 22 N~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEE 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 65
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.17 E-value=31 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 207 KLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 207 ~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
.......++..+|.+.+..+..+..++.+++|
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455666666777777777777777777766
No 66
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.90 E-value=62 Score=26.50 Aligned_cols=9 Identities=11% Similarity=0.475 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 013334 421 EIVEKFQQY 429 (445)
Q Consensus 421 ~l~~~~~~Y 429 (445)
.|.-.|..|
T Consensus 116 ~Ld~EIatY 124 (131)
T 3tnu_A 116 RLEQEIATY 124 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333344
No 67
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=62.79 E-value=16 Score=21.57 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Q 013334 206 NKLKEKTGALDEKFSQTEFDLVQSVQ 231 (445)
Q Consensus 206 ~~lk~e~~~l~~~l~~~~~~l~~l~q 231 (445)
..+|.+...+..+|..+.|++..++|
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555555555555443
No 68
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=62.57 E-value=1.3e+02 Score=30.21 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=12.2
Q ss_pred cCCCCCCCcccccCCCcchHHHHH
Q 013334 95 VNCPMNFTLKDLIRPDATRTEYFL 118 (445)
Q Consensus 95 ~gv~~DFt~~DL~~P~~~R~~~iL 118 (445)
|... |=.|..+. |+.=.+.-+|
T Consensus 70 c~~~-~~~~G~~C-PTtC~l~D~L 91 (464)
T 1m1j_B 70 CKHP-LDELGVLC-PTGCELQTTL 91 (464)
T ss_dssp EECS-STTTCEEE-ECTTHHHHHH
T ss_pred cccc-CCCccCcC-CCccHHHHHH
Confidence 4444 55555555 8865554444
No 69
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=61.24 E-value=62 Score=25.94 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=36.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 013334 324 VVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 391 (445)
Q Consensus 324 ~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~ 391 (445)
+........+...+..+++.-+..+..++..-.+-..+....+..|....+.+..++...+..++-+.
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 33334445556666666666666666666666666667777777777777777777777666665443
No 70
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.83 E-value=67 Score=26.19 Aligned_cols=9 Identities=11% Similarity=0.290 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 013334 421 EIVEKFQQY 429 (445)
Q Consensus 421 ~l~~~~~~Y 429 (445)
.|.-.|..|
T Consensus 114 ~Ld~EIatY 122 (129)
T 3tnu_B 114 ALDVEIATY 122 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334444
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.31 E-value=63 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013334 190 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 235 (445)
Q Consensus 190 ~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~ 235 (445)
++.-|+.+-.-.+.++..=+....++.++++.+...+..+..++..
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4444544444566666666666666666666666666555555443
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=60.27 E-value=57 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
+.+....++...|+.....|..++..+
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444433
No 73
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.70 E-value=80 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 217 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~ 217 (445)
+-+..+..++..|+-+...+......++.+...|.+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555544444
No 74
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.57 E-value=61 Score=25.28 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=25.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 194 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l 194 (445)
+..+++.+.++...++.+......++..+......+.......+.+...+.++|-+|
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444444433333333334444444444444444
No 75
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=59.40 E-value=67 Score=25.71 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 013334 221 QTEFDLVQSVQQNADLR 237 (445)
Q Consensus 221 ~~~~~l~~l~qe~~~L~ 237 (445)
.+..++..+......|.
T Consensus 39 ~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 76
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.25 E-value=82 Score=26.72 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 013334 309 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK 376 (445)
Q Consensus 309 ~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~ 376 (445)
+..+++.|...+.++.......+.........++.|- ..+=.+.+.+..+.++.-..+.......
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT---asLFeEAN~MVa~ar~~~~~~e~r~~~L 120 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT---ASLFDEANNMVADARKEKYAIEILNKRL 120 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444434444444443333332 2333555666666655554444333333
No 77
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=59.10 E-value=82 Score=26.65 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHH
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 245 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe 245 (445)
.-|..|.+++..-++....|..-...++....+....+++....+.++.+-..+|++.|-.-||
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 3444455555544544455555555556666666666666666667777777777777777675
No 78
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.05 E-value=82 Score=26.62 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNADL 236 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L 236 (445)
+..+...+.-+++.++..+..++.|...|
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555444
No 79
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.22 E-value=86 Score=26.63 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcH----------HHHHHHHHHHHHHHHHHH
Q 013334 359 SEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA----------AKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 359 ~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e----------~ei~~i~~~y~~l~~~~~ 427 (445)
.+....+|..|+..+...-...+.-...+..++..++.++..+...+..+. .++..+...||.|...|+
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 333333344444433333333333333344444444444444444444433 333444555555554443
No 80
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=58.12 E-value=58 Score=24.61 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 013334 199 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 231 (445)
Q Consensus 199 ~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~q 231 (445)
..+...++.++.+...|.+.++.....+..+.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 81
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=57.68 E-value=88 Score=26.57 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=25.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 227 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~ 227 (445)
.+.+|+.+.+..-..|+.|.-.-......-+.|..++..+..++.+++....
T Consensus 43 k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE 94 (155)
T 2efr_A 43 KSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444444444555555555555544443333
No 82
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=57.47 E-value=1.6e+02 Score=29.45 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 013334 357 LKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTK 402 (445)
Q Consensus 357 ~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~ 402 (445)
+..+++++++.-++..+......+..++..++....++..||..|.
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555555555555555554443
No 83
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=57.08 E-value=42 Score=22.90 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 013334 358 KSEDATRAFENVKLEMESKRQ 378 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~ 378 (445)
+++++.++.++++..+++...
T Consensus 26 rieelkkkweelkkkieelgg 46 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGG 46 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHhCC
Confidence 677777777777766666543
No 84
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=56.48 E-value=33 Score=23.66 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 204 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 204 ~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
...++|+-.-.+..++.++++.-..-+||+++|..-
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888888888888888754
No 85
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.34 E-value=1.6e+02 Score=29.16 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=15.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 216 DEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 216 ~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
..+|.+++.++.++.+++..++.+|
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666665554
No 86
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.46 E-value=66 Score=24.11 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 013334 182 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 242 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~ 242 (445)
++++.|+-++.++-+...+..-.+..-| ..|..+...+..-..++.+|.++++.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK-------~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATK-------AEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3444444444444333333333333333 34444444444445566666666553
No 87
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.33 E-value=1.4e+02 Score=30.96 Aligned_cols=112 Identities=10% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-H
Q 013334 296 MQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM-E 374 (445)
Q Consensus 296 l~~~~e~~~~~k~~e~~~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~-e 374 (445)
++......++.....+.+..-.+.+..+......+++....+..+..+++..+++.++.....+..+..+|+.-+..+ .
T Consensus 465 l~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~ 544 (592)
T 1f5n_A 465 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 544 (592)
T ss_dssp HHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhHHHHHHHHHHH-----HHHHHHHHhhHHHHHHh
Q 013334 375 SKRQDLEARQKKVEAV-----VTEVDAITSKTKFVKES 407 (445)
Q Consensus 375 ~~~~~~e~~~~~~e~~-----~~~v~~le~~~~~~~~~ 407 (445)
+..+-++.+-++.+.+ ..++..+..+|.+++..
T Consensus 545 e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 545 EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 88
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.24 E-value=74 Score=24.65 Aligned_cols=45 Identities=11% Similarity=0.276 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013334 185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 229 (445)
Q Consensus 185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l 229 (445)
..+..+|..+......+..++..+..+...+...|..+..+...+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433333
No 89
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=53.98 E-value=98 Score=26.00 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=12.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKH 197 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~ 197 (445)
.+..|...++.|..++.++...
T Consensus 58 ~~~~Le~~n~~L~~~lke~~~~ 79 (155)
T 2oto_A 58 AKQALEDQRKDLETKLKELQQD 79 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655555433
No 90
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=53.62 E-value=1e+02 Score=25.95 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013334 328 KSLEAKLIERQGKVEQLDELQQQ---LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 404 (445)
Q Consensus 328 ~~L~~kl~e~q~k~e~l~e~~~~---~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~ 404 (445)
+.|..+...-..++..|+.+++. ...+...+.++..+++.-+..+++......+.-...+..++.++..+...+.++
T Consensus 41 k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 41 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555555555442 334445556666666665555555444444444444444444444444444443
No 91
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=53.49 E-value=82 Score=24.95 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 336 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEV 394 (445)
Q Consensus 336 e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v 394 (445)
++..++.++......+..+....++.+.+++..-..++....+.++........+...+
T Consensus 33 eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 33 ELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554445555555666666666666655555555555554444333333333
No 92
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.46 E-value=14 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=12.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
+.+.++.+++-.....+..++.+|++-
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444445555555543
No 93
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.04 E-value=79 Score=24.59 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=18.1
Q ss_pred HHhhHhhhhhhh--HHHHHHHHhHHHHHHHHHHHHHHHH
Q 013334 124 FCLYKDTKMNLL--RPIAEDLTRLDEQRSELEDKISQLN 160 (445)
Q Consensus 124 F~rFre~~~~~~--~~~~~e~~~l~~~~~~l~~~i~~l~ 160 (445)
|=+++.+++... .+++.++-.|......++++...++
T Consensus 19 YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr 57 (104)
T 3s9g_A 19 YERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLR 57 (104)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665433 3455555444444444444444333
No 94
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.58 E-value=71 Score=23.93 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 136 RPIAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
++-....+++.++...++-++..+.++-.++
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQy 45 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQY 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666665543333
No 95
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.16 E-value=72 Score=24.70 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 013334 337 RQGKVEQLDELQ 348 (445)
Q Consensus 337 ~q~k~e~l~e~~ 348 (445)
++..+.+++..+
T Consensus 24 LE~~l~e~E~~~ 35 (95)
T 3mov_A 24 CLERIQELEDLL 35 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 96
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=51.47 E-value=55 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHH
Q 013334 386 KVEAVVTEVDAITSKTKFVKESGAAKLQE 414 (445)
Q Consensus 386 ~~e~~~~~v~~le~~~~~~~~~~e~ei~~ 414 (445)
.+..+.+++..+..++...+.++..++.+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777766666643
No 97
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=50.73 E-value=59 Score=22.48 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDL 226 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l 226 (445)
+..++.....+...++.....|
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 98
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=49.94 E-value=98 Score=24.79 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=16.4
Q ss_pred HHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334 397 ITSKTKFVKESGAAKLQELASKAEEIVEKF 426 (445)
Q Consensus 397 le~~~~~~~~~~e~ei~~i~~~y~~l~~~~ 426 (445)
.+.+|++++..|...+++++.+|.+-...+
T Consensus 66 ~e~E~ae~k~KYD~~lqe~ese~~~kkK~l 95 (115)
T 3vem_A 66 LERKMAEVQAEFRRKFHEVEAEHNTRTTKI 95 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666665444443
No 99
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=49.82 E-value=1.1e+02 Score=26.08 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013334 136 RPIAEDLTRLDEQRSELEDKISQLNA 161 (445)
Q Consensus 136 ~~~~~e~~~l~~~~~~l~~~i~~l~~ 161 (445)
..+++++..+......+...+..|..
T Consensus 39 ~~F~~~v~~I~~~i~~i~~~v~~l~~ 64 (180)
T 1s94_A 39 EEFFEQVEEIRAMIDKISDNVDAVKK 64 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444444444444433
No 100
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.03 E-value=1.2e+02 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
+++++-.+.+++.++..+++.|+.+.+.+
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~ 57 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKI 57 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655555544433
No 101
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=48.89 E-value=52 Score=21.36 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 013334 203 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 241 (445)
Q Consensus 203 ~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv 241 (445)
..+.++|...-.+...-..++.-+.+++.++.+|+..+.
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445566667777777777776543
No 102
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=48.81 E-value=29 Score=21.25 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=15.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
+.+.++++++-.....+..|+.+|++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555566666666666666666654
No 103
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.04 E-value=1.2e+02 Score=30.80 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=12.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 013334 139 AEDLTRLDEQRSELEDKISQLNAE 162 (445)
Q Consensus 139 ~~e~~~l~~~~~~l~~~i~~l~~~ 162 (445)
++++-.+.+++.++..+++.|+.+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~ 55 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKK 55 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555444443
No 104
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=48.04 E-value=93 Score=26.77 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=41.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 013334 373 MESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 434 (445)
Q Consensus 373 ~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~ 434 (445)
++...+++...+..+..++. .+..+|+.+++.+..++..+......|.+++..|...--
T Consensus 18 ~~~alr~ia~l~r~~~~i~~---~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEA---QMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444443333332 345777899999999999999999999999999987653
No 105
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=47.92 E-value=96 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 210 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 210 ~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
+...++..++...+.+++...|...+-....-..||.+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevN 73 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 345556666667777777777777777788888888885
No 106
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=47.03 E-value=64 Score=21.81 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 180 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK 211 (445)
Q Consensus 180 l~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e 211 (445)
|..+|..|+.+|..-..+-..|..+...+|+-
T Consensus 15 Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 15 LKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 33444444444444333333444444444433
No 107
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.85 E-value=41 Score=23.13 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
.+++.|..+..+++.++..|..+++++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554433
No 108
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=46.32 E-value=33 Score=21.11 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 212 TGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 212 ~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
++.+.++++++-.....+..|+.+|++
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344555555555555556666666654
No 109
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.32 E-value=1e+02 Score=24.04 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 013334 333 KLIERQGKVEQLDELQ 348 (445)
Q Consensus 333 kl~e~q~k~e~l~e~~ 348 (445)
....+..++..++..+
T Consensus 25 ~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 25 RIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.90 E-value=77 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 013334 182 AKVKELRQTIQDLNK 196 (445)
Q Consensus 182 ~e~~~L~~~L~~l~~ 196 (445)
.+|..|..++..|..
T Consensus 36 ~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 111
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.53 E-value=75 Score=21.91 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
.+.........+......+.....++.+++
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333
No 112
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.99 E-value=99 Score=29.38 Aligned_cols=37 Identities=8% Similarity=0.209 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCCC-CCChhhhCCCCh----hHHHHHHHHHH
Q 013334 11 ATEIVTILTETEIA-VITENDLKNPNP----DFVSDLYTRLL 47 (445)
Q Consensus 11 ~~EIv~~L~~~~i~-~~t~~dl~~Pt~----~~v~~ly~~~l 47 (445)
.+||..+|+.+|.| .+|.+-|..|.+ ..+-.+..|++
T Consensus 70 eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~Lg~L~WLv 111 (315)
T 2ve7_A 70 EEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLI 111 (315)
T ss_dssp HHHHHHHHHHTTCSSCCCHHHHHTTTSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceeCHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 45666666666654 455666655533 22445555555
No 113
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.56 E-value=44 Score=23.55 Aligned_cols=16 Identities=31% Similarity=0.301 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 013334 181 DAKVKELRQTIQDLNK 196 (445)
Q Consensus 181 ~~e~~~L~~~L~~l~~ 196 (445)
..+|..|..++..|..
T Consensus 35 ~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 35 KAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 114
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.00 E-value=20 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=13.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
+.|.++.+++-.....+..++.+|++-
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444444444455555555555543
No 115
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=42.70 E-value=1.1e+02 Score=24.60 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-----ccchhHhHHHHHHHHHHHHHHHHHHHH
Q 013334 154 DKISQLNAEIAAYNEVRER-----ELPLVQEVDAKVKELRQTIQDLNKHQV 199 (445)
Q Consensus 154 ~~i~~l~~~~~~~~~~~~~-----~~~~~~el~~e~~~L~~~L~~l~~~q~ 199 (445)
.+|..|...++.++.+.+. +.+.+.++..+...|..+|..++..|.
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333322 556788888888888888888877765
No 116
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.59 E-value=1.2e+02 Score=23.73 Aligned_cols=63 Identities=8% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH--Hhh---------------HHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334 365 AFENVKLEMESKRQDLEARQKKVEAVVTEVDAI--TSK---------------TKFVKESGAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 365 ~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~l--e~~---------------~~~~~~~~e~ei~~i~~~y~~l~~~~~ 427 (445)
.+..++.+++...++.+....+++.++.++... .++ ........+.++..+..++.+|...+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666552 122 344555667888888888888877653
No 117
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=42.51 E-value=75 Score=21.34 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
+.++|.-...+..++.++++.=...+||+.+|+.-
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33444444455555556666666666676666643
No 118
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.64 E-value=1.2e+02 Score=23.63 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 013334 226 LVQSVQQNADLRS 238 (445)
Q Consensus 226 l~~l~qe~~~L~~ 238 (445)
+..+..||++|+.
T Consensus 77 ~e~Lq~E~erLr~ 89 (100)
T 1go4_E 77 HSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 119
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.61 E-value=2.7e+02 Score=27.55 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 013334 225 DLVQSVQQNADLR 237 (445)
Q Consensus 225 ~l~~l~qe~~~L~ 237 (445)
++..++++.++++
T Consensus 443 ~~~~~~~~~~~~~ 455 (487)
T 3oja_A 443 KETQLAEENARLK 455 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 3333333444443
No 120
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.45 E-value=1e+02 Score=22.60 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013334 147 EQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 147 ~~~~~l~~~i~~l~~~~~~~ 166 (445)
.+...++.++..++..+++.
T Consensus 14 ~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 121
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=41.41 E-value=1.1e+02 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 193 DLNKHQVSLRTTLNKLKEKTGALDEK 218 (445)
Q Consensus 193 ~l~~~q~~l~~~~~~lk~e~~~l~~~ 218 (445)
+|+.-+..|..-+.+++.+.+++...
T Consensus 36 EL~~G~~KL~~mi~~l~~E~~~l~~n 61 (78)
T 3iv1_A 36 DLKKGHQKLEEMVTRLDQEVAEVDKN 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 122
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.24 E-value=2.1e+02 Score=28.26 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
.......|...+......|..+.+.+..|..+.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555566666665543
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.08 E-value=1.3e+02 Score=23.52 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 013334 150 SELEDKISQLNAE 162 (445)
Q Consensus 150 ~~l~~~i~~l~~~ 162 (445)
..+..++..+...
T Consensus 27 ~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 27 GELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 124
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=40.74 E-value=1.2e+02 Score=22.98 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=25.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhh------cCHHHHHHHHHHHHHHHHH
Q 013334 218 KFSQTEFDLVQSVQQNADLRSKIV------QSPEKLQRTLEEKKSIREE 260 (445)
Q Consensus 218 ~l~~~~~~l~~l~qe~~~L~~~Iv------~SPe~lk~~l~e~k~~~~~ 260 (445)
+++.+...|..++.++..|...+. ++|+++.....++...-.+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~e 71 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQE 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHH
Confidence 344555555555666666665542 5788888777666554333
No 125
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=40.62 E-value=1.1e+02 Score=22.65 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=24.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 225 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~ 225 (445)
++.|..+|.+|-..=..||-....|-.+.+.+..++..+..++......
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4445556666555444555554445555555554444444444433333
No 126
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.29 E-value=1.3e+02 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 139 AEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 139 ~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
++++-.+.+++.++..+++.|+.+.+.+
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~ 54 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQV 54 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666655554443
No 127
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.00 E-value=51 Score=20.35 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 212 TGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 212 ~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
++.+.++.+++-..-..+..++.+|++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444555555555555555555554
No 128
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.73 E-value=1.7e+02 Score=24.43 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 013334 207 KLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDA 264 (445)
Q Consensus 207 ~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~ 264 (445)
..+.-..+...+..++.-.++-+..+.++...+.-.++.++...-++++..-+.++..
T Consensus 63 eak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 63 EAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444455555555566666666666666666666665555555444444443
No 129
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.25 E-value=24 Score=20.07 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Q 013334 207 KLKEKTGALDEKFSQTEFDLVQS 229 (445)
Q Consensus 207 ~lk~e~~~l~~~l~~~~~~l~~l 229 (445)
++|.....+..+|..+++++..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34444445555555555555443
No 130
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.18 E-value=41 Score=20.68 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=13.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 214 ALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 214 ~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
.+.++.+++-..-..+++|+.+|++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444445555555555566666554
No 131
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.04 E-value=70 Score=27.75 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHhhHhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHH
Q 013334 124 FCLYKDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 191 (445)
Q Consensus 124 F~rFre~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L 191 (445)
|+-..+++...+..|.+++.. +...++..+...+.++..+-....-+...+..+..++.+|++++
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~---~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYT---QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445566777777777666542 23445555555555554443222223333444444444443333
No 132
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=37.49 E-value=1.5e+02 Score=23.44 Aligned_cols=29 Identities=3% Similarity=0.189 Sum_probs=14.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 136 RPIAEDLTRLDEQRSELEDKISQLNAEIA 164 (445)
Q Consensus 136 ~~~~~e~~~l~~~~~~l~~~i~~l~~~~~ 164 (445)
..++++++.+......+...+..|.....
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444555554444444333
No 133
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=37.11 E-value=1.3e+02 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=22.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhc-CHHH-HHHHHHHH
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRSKIVQ-SPEK-LQRTLEEK 254 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~-SPe~-lk~~l~e~ 254 (445)
..+..++..+..++..+.+++..+.+++-+ .|+. +++.+.-+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~L 47 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 344455555555555556666666655543 3554 44444444
No 134
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.76 E-value=99 Score=21.05 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 185 KELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 217 (445)
Q Consensus 185 ~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~ 217 (445)
.+|..++..|......|...+...+.+...|..
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333
No 135
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.31 E-value=1.5e+02 Score=23.01 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013334 145 LDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 145 l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
|..+.-.++.+...+..+...+
T Consensus 35 LIqEYl~LE~~~s~le~e~~rl 56 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRL 56 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433
No 136
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.28 E-value=1.3e+02 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 210 EKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 210 ~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
++.......|..++..+.+...++..|++.+
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666666554
No 137
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=36.18 E-value=1.5e+02 Score=22.90 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 189 QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 189 ~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
..+.-|+.+-.-...++..=++...++.++.+.+...+..+..++.+|.+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666777777777777777777777777776666666654
No 138
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.16 E-value=1.4e+02 Score=22.52 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHhh-HhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 122 LNFCLY-KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 167 (445)
Q Consensus 122 INF~rF-re~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~ 167 (445)
-||..- -+.|.-.+.+..++...|..+...++++|..++.++.+++
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577766 5556667777778887777777777777777666655553
No 139
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=36.07 E-value=61 Score=19.85 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=12.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 214 ALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 214 ~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
.+.++++++-..-..+..|+.+|++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444455555555554
No 140
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.07 E-value=53 Score=22.54 Aligned_cols=19 Identities=5% Similarity=0.302 Sum_probs=8.2
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 013334 177 VQEVDAKVKELRQTIQDLN 195 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~ 195 (445)
++.|..+|.+|++++..|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 141
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.02 E-value=1.1e+02 Score=23.33 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=24.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNK 207 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~ 207 (445)
.+.+|+.+|..|+.++..|......|+.-+..
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888877777665543
No 142
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.91 E-value=1.3e+02 Score=22.39 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhhcCHH
Q 013334 226 LVQSVQQNADLRSKIVQSPE 245 (445)
Q Consensus 226 l~~l~qe~~~L~~~Iv~SPe 245 (445)
+..+..|+..|+..+++-|+
T Consensus 59 v~~L~~E~~~Lr~ll~q~p~ 78 (78)
T 1gu4_A 59 VEQLSRELSTLRNLFKQLPE 78 (78)
T ss_dssp HHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 34455566666666666553
No 143
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.83 E-value=1.4e+02 Score=22.40 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 013334 296 MQAILEQVNSA 306 (445)
Q Consensus 296 l~~~~e~~~~~ 306 (445)
.+.+.++++.+
T Consensus 26 KQ~i~EELs~v 36 (81)
T 1wt6_A 26 RQSLSREMEAI 36 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 144
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.66 E-value=3.5e+02 Score=27.11 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 013334 115 EYFLSAILN 123 (445)
Q Consensus 115 ~~iLSalIN 123 (445)
-.++-.|.+
T Consensus 85 C~l~D~L~k 93 (464)
T 1m1j_B 85 CELQTTLLK 93 (464)
T ss_dssp THHHHHHHH
T ss_pred cHHHHHHHH
Confidence 344444443
No 145
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.25 E-value=1.5e+02 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 013334 201 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 239 (445)
Q Consensus 201 l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~ 239 (445)
+..++...+..+..+..++..+...+..+..+..+|...
T Consensus 71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444555555555555555555566666666644
No 146
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=35.05 E-value=52 Score=20.33 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=14.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
+.+.++.+++-.....+++|+.+|++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555555555555556666666654
No 147
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.55 E-value=1.9e+02 Score=29.35 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
...++++...+.++|..++..+..+..++..+-
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554443
No 148
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=34.25 E-value=70 Score=21.82 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=9.9
Q ss_pred hhHhHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQ 192 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~ 192 (445)
.+..++.+++.|+.++.
T Consensus 49 evkkveeevkkleeeik 65 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHh
Confidence 45555566666665554
No 149
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.02 E-value=1.1e+02 Score=20.81 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013334 209 KEKTGALDEKFSQTEFDLVQSVQQNAD 235 (445)
Q Consensus 209 k~e~~~l~~~l~~~~~~l~~l~qe~~~ 235 (445)
......|..-+.....+|..+..++++
T Consensus 22 ~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 22 AARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444333
No 150
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.51 E-value=1.3e+02 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=21.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
+++++-.+.+++.++..+++.|+.+.+.+..
T Consensus 28 ~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk 58 (425)
T 2dq3_A 28 LVDKVLELDKRRREIIKRLEALRSERNKLSK 58 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777766555533
No 151
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.20 E-value=1.3e+02 Score=22.44 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=20.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRT 203 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~ 203 (445)
.+.+|+.+|..|+.++..|......|+.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888777666553
No 152
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=33.02 E-value=26 Score=23.73 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHhhcC
Q 013334 5 DYPRLSATEIVTILTETE 22 (445)
Q Consensus 5 ~FP~l~~~EIv~~L~~~~ 22 (445)
-||..+..+|..||..++
T Consensus 14 MFP~~~~~~ik~~L~~~~ 31 (49)
T 1otr_A 14 MFPAISKSKLQVHLLENN 31 (49)
T ss_dssp HCSSSCHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHcC
Confidence 399999999999999985
No 153
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.98 E-value=59 Score=20.09 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=12.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRS 238 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~ 238 (445)
+.+.++++++-..-..+..|+.+|++
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34444444444444445555555543
No 154
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.86 E-value=1.6e+02 Score=22.34 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhcCHHHH
Q 013334 226 LVQSVQQNADLRSKIVQSPEKL 247 (445)
Q Consensus 226 l~~l~qe~~~L~~~Iv~SPe~l 247 (445)
+..|..++..|+..+++-|+.+
T Consensus 59 v~~L~~E~~~Lr~ll~~~p~~~ 80 (87)
T 1hjb_A 59 VEQLSRELSTLRNLFKQLPEPL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHCcHHH
Confidence 4445566666666666666653
No 155
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.67 E-value=3.5e+02 Score=26.21 Aligned_cols=51 Identities=10% Similarity=0.255 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 013334 190 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 240 (445)
Q Consensus 190 ~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~I 240 (445)
++..+....+.|...+..+...+..|...+.......-+++.++..|+|.+
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 344455556667777777777777777777777777777777777777655
No 156
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.50 E-value=1.3e+02 Score=21.14 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=12.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 177 VQEVDAKVKELRQTIQDLNKHQVSLR 202 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~~q~~l~ 202 (445)
+..|..+|..|..++..|......|.
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444443
No 157
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.38 E-value=98 Score=22.53 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 013334 185 KELRQTIQDL 194 (445)
Q Consensus 185 ~~L~~~L~~l 194 (445)
++|+.++..|
T Consensus 32 ~~LE~~v~~l 41 (70)
T 1gd2_E 32 KALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 158
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.83 E-value=1.6e+02 Score=22.01 Aligned_cols=12 Identities=0% Similarity=0.227 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 013334 183 KVKELRQTIQDL 194 (445)
Q Consensus 183 e~~~L~~~L~~l 194 (445)
.|.....+|.+.
T Consensus 39 ~ni~~eskL~ea 50 (81)
T 1wt6_A 39 DNQNFASQLREA 50 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 159
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.85 E-value=1.6e+02 Score=30.50 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=13.6
Q ss_pred cCCCcchHHHHHHHHHHHHhh
Q 013334 107 IRPDATRTEYFLSAILNFCLY 127 (445)
Q Consensus 107 ~~P~~~R~~~iLSalINF~rF 127 (445)
+.|++.--+.|+..++-|..|
T Consensus 270 ~t~~~~~ak~i~~lc~~~H~f 290 (575)
T 2i1j_A 270 FAPRVRVNKRILALCMGNHEL 290 (575)
T ss_dssp ECSCHHHHHHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHHHHH
Confidence 456655556677777777666
No 160
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=30.06 E-value=1.2e+02 Score=24.66 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~~~ 258 (445)
++.....+..+.+++-.++..+..+..+.+.++-+.+-..++|.=....|...+
T Consensus 18 L~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaal 71 (130)
T 3cl3_D 18 LEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAAL 71 (130)
T ss_dssp ---------------------------------CTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456667777777788888888888888888888878888887777777765
No 161
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.67 E-value=1.1e+02 Score=30.02 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 205 LNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
++.++.+..++..++...+.....+-.++..|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 26 IKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333333333333333333333344443
No 162
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.65 E-value=2.1e+02 Score=22.71 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=24.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 213 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 213 ~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
.+|..+|...+.+++...+....-....-..||.+.
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevN 60 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQYEKDPDELN 60 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 445555666666666667777777777777787775
No 163
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.60 E-value=1.9e+02 Score=22.13 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=9.7
Q ss_pred hhcCHHHHHHHHHHHHHHH
Q 013334 240 IVQSPEKLQRTLEEKKSIR 258 (445)
Q Consensus 240 Iv~SPe~lk~~l~e~k~~~ 258 (445)
|-.+.+.+...|+.....+
T Consensus 59 v~~~~~e~~~~L~~~~e~i 77 (107)
T 1fxk_A 59 IRVAKDELTEELQEKLETL 77 (107)
T ss_dssp EEECHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 4445555555555554444
No 164
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=29.39 E-value=2.7e+02 Score=23.89 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=42.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 235 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~ 235 (445)
.+..+...+..|++.|..+......|...+.......-++..+++.+.-.+..|....+.
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445567778888888888888777777777777777777766666666666665544443
No 165
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.38 E-value=2.9e+02 Score=24.14 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=18.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 212 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~ 212 (445)
.|+.|..+|..|.++|......-.+|..++..++...
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666666665555544333333333333333333
No 166
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=28.84 E-value=2.3e+02 Score=22.85 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=10.7
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 013334 401 TKFVKESGAAKLQELASKAEEIVEKFQ 427 (445)
Q Consensus 401 ~~~~~~~~e~ei~~i~~~y~~l~~~~~ 427 (445)
+..+-..|+...+++...-.....-|+
T Consensus 73 y~~l~k~Y~~~~keLd~~ik~qekiId 99 (119)
T 3etw_A 73 YQELASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333
No 167
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.55 E-value=1.8e+02 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 191 IQDLNKHQVSLRTTLNKLKEKTGAL 215 (445)
Q Consensus 191 L~~l~~~q~~l~~~~~~lk~e~~~l 215 (445)
+..|...+..+...++-++....+|
T Consensus 48 i~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 48 VTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444333333
No 168
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=28.02 E-value=3.3e+02 Score=27.49 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=13.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013334 139 AEDLTRLDEQRSELEDKISQLNAEIA 164 (445)
Q Consensus 139 ~~e~~~l~~~~~~l~~~i~~l~~~~~ 164 (445)
++++-.+.+++.++..+++.|+.+.+
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN 61 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLIN 61 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554433
No 169
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.97 E-value=2.2e+02 Score=28.87 Aligned_cols=31 Identities=6% Similarity=-0.076 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 207 KLKEKTGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 207 ~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
.++++...+..+|..++..+..+..++..+-
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555554443
No 170
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.01 E-value=2.1e+02 Score=28.63 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 013334 208 LKEKTGALDEKFSQTEFDLVQSVQQNAD 235 (445)
Q Consensus 208 lk~e~~~l~~~l~~~~~~l~~l~qe~~~ 235 (445)
++.+...+.++|..++..+..+..++..
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 171
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.91 E-value=2.4e+02 Score=22.54 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHH
Q 013334 358 KSEDATRAFENVKLEMESKRQDLEA 382 (445)
Q Consensus 358 ~~eel~~~~~~lkee~e~~~~~~e~ 382 (445)
++++++.++..|...+....-+++.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333
No 172
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.70 E-value=2.8e+02 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 013334 206 NKLKEKTGALDEKFSQTEFDLVQSVQQNADL 236 (445)
Q Consensus 206 ~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L 236 (445)
..++.+...+.+++..++..+..+..++..+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444444433
No 173
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=26.19 E-value=6.2e+02 Score=26.98 Aligned_cols=402 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHhhcCC--CCCChhhhCCCChhHHHHHHHHHH-HHh--cccCcccchh-----------cchHhhhcCCCchhHHHH
Q 013334 15 VTILTETEI--AVITENDLKNPNPDFVSDLYTRLL-IFL--DVLHEDDQGQ-----------LDFAALEQLENPDLHVRS 78 (445)
Q Consensus 15 v~~L~~~~i--~~~t~~dl~~Pt~~~v~~ly~~~l-~~~--~~~~~e~~~~-----------~~~~~~~~l~~pe~~~~s 78 (445)
+.++...|+ .+++++||..-++..+-++.-+++ .|. +++.+...+. ..++......+...+.++
T Consensus 73 l~~~~~~g~~~~~i~~~di~~g~~~~~l~l~w~l~~~~~~~~~~~~~~~~~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg 152 (863)
T 1sjj_A 73 LDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDG 152 (863)
T ss_dssp HHHHHHTTCCCTTCCSHHHHTTCHHHHHHHHHHHHSCCCCCCCCCCCCCSTTTTHHHHHHHHTTSTTCCCCSSSGGGTTS
T ss_pred HHHHHHcCCccCCCChHHhhcCCHHHHHHHHHHHHHHHhhcccchhccchHHHHHHHHHHhccCCCCCCCCCCccccccH
Q ss_pred HHHHHHH----------------------HHHHHHHHH-cCCCCCCCccccc---CCCcchHHHHHHHHHHHHhhHhh--
Q 013334 79 VQIMKLY----------------------SMVKEVVTT-VNCPMNFTLKDLI---RPDATRTEYFLSAILNFCLYKDT-- 130 (445)
Q Consensus 79 ~~~l~~~----------------------~~~~~~l~~-~gv~~DFt~~DL~---~P~~~R~~~iLSalINF~rFre~-- 130 (445)
+.+..+. ..+..+... +||+.=.+..|+. +|+.+-+..++|.+.|+..=-..
T Consensus 153 ~~~~~li~~~~p~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~~~~~~~~~ 232 (863)
T 1sjj_A 153 LGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAE 232 (863)
T ss_dssp HHHHHHHHTTCCSSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTTTTCCCSCST
T ss_pred HHHHHHHHHhCCCCcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHHHhcccchhh
Q ss_pred -----------hhhhhHHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhccc-----------
Q 013334 131 -----------KMNLLRPIAEDLTRLDEQRSELED-------------KISQLNAEIAAYNEVRERELP----------- 175 (445)
Q Consensus 131 -----------~~~~~~~~~~e~~~l~~~~~~l~~-------------~i~~l~~~~~~~~~~~~~~~~----------- 175 (445)
.+...+.+..++..........-. .+..++..+..+..-+....|
T Consensus 233 ~~~~~~~~~~~~~~~~e~l~~~y~~~~~el~~Wi~~~~~~l~~~~~~~~l~~v~~~l~~~~~~~~~~k~~~~~e~~~le~ 312 (863)
T 1sjj_A 233 TAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEI 312 (863)
T ss_dssp TCCTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCCCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q ss_pred -----------------------hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 013334 176 -----------------------LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 232 (445)
Q Consensus 176 -----------------------~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~~~~~~l~~l~qe 232 (445)
.+..+...+..|.............-.....++..-..........+..=+......
T Consensus 313 ~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~~~Wl~~~e~~ 392 (863)
T 1sjj_A 313 NFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAM 392 (863)
T ss_dssp TTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHHHHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 233 NADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKD 312 (445)
Q Consensus 233 ~~~L~~~Iv~SPe~lk~~l~e~k~~~~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~ 312 (445)
... ......|++.++..+..- +.....+..+......+......+. .........+...
T Consensus 393 l~~-~~~g~~dl~~v~~ll~kh------------------~~f~~el~~~~~~v~~l~~~~~~L~--~~~~~~~~~I~~~ 451 (863)
T 1sjj_A 393 LQQ-KDYETATLSEIKALLKKH------------------EAFESDLAAHQDRVEQIAAIAQELN--ELDYYDSPSVNAR 451 (863)
T ss_dssp HHS-CTTTSSCHHHHHHHHHHH------------------HHHHHHHTTHHHHHHHHHHHHHHHH--HTCCTTHHHHHHH
T ss_pred hhc-ccccCCCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccHHHHHHH
Q ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------HHHHHhhhhHHHHH
Q 013334 313 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVK--------LEMESKRQDLEARQ 384 (445)
Q Consensus 313 ~k~lk~kl~~~~~~~~~L~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lk--------ee~e~~~~~~e~~~ 384 (445)
...+..+-..=......-..+|.+.....+.+++-+.+-......-..=+......+. +.++...+..+...
T Consensus 452 ~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~ 531 (863)
T 1sjj_A 452 CQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFK 531 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHH--------------HHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334 385 KKVEAVVTEVDAITSKTKFVKESGAAK--------------LQELASKAEEIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 385 ~~~e~~~~~v~~le~~~~~~~~~~e~e--------------i~~i~~~y~~l~~~~~~Y~~~~~~~~ 437 (445)
..+......+..+..-...+..-.+.. +..+...|..|...+......+...+
T Consensus 532 ~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l 598 (863)
T 1sjj_A 532 ATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEH 598 (863)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 174
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=26.15 E-value=2e+02 Score=22.08 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccc
Q 013334 387 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTE 441 (445)
Q Consensus 387 ~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~~~~~ 441 (445)
+..+-..+..+.-++...-..+-...+.+.....+|.+.++.|=.-|...|-++.
T Consensus 35 LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE~~l~~~~ 89 (91)
T 2pjw_V 35 LQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLEQQLQSIN 89 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345666777777777888888888889999999999999999988888876654
No 175
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.00 E-value=1.9e+02 Score=21.75 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=28.0
Q ss_pred HHHhh-HhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 123 NFCLY-KDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 123 NF~rF-re~~~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
||.+- -+.+.-.+.+..++...|+.+...+.++|..|+.++.++
T Consensus 20 ~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 455566666677777777766666666666666655554
No 176
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.79 E-value=1.3e+02 Score=22.35 Aligned_cols=16 Identities=19% Similarity=0.007 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 013334 205 LNKLKEKTGALDEKFS 220 (445)
Q Consensus 205 ~~~lk~e~~~l~~~l~ 220 (445)
+..+..+...+..++.
T Consensus 44 Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 44 GARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 177
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.30 E-value=1.8e+02 Score=20.38 Aligned_cols=9 Identities=44% Similarity=0.453 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 013334 152 LEDKISQLN 160 (445)
Q Consensus 152 l~~~i~~l~ 160 (445)
.+++|.+|-
T Consensus 25 SeAkiQQLm 33 (63)
T 2w6a_A 25 SEAKVQQLM 33 (63)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 334444443
No 178
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.63 E-value=2.2e+02 Score=21.17 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 211 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 211 e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
...+|..+|...+.+++...+....-....-..||.+.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN 43 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 34556666666677777777777777777788888875
No 179
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.63 E-value=2.1e+02 Score=21.44 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH--HhcHHHHHHHHHHHHHHHHHHHHhH
Q 013334 380 LEARQKKVEAVVTEVDAITSKTKFVK--ESGAAKLQELASKAEEIVEKFQQYT 430 (445)
Q Consensus 380 ~e~~~~~~e~~~~~v~~le~~~~~~~--~~~e~ei~~i~~~y~~l~~~~~~Y~ 430 (445)
++.....++.++.++..|+..|.+-- ..--..+..+..++..+...+...+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555554321 1112345555555555555554433
No 180
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.37 E-value=1.2e+02 Score=18.74 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=10.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 013334 215 LDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 215 l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
+.++.+++-..-..+..++.+|+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444555544
No 181
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=24.04 E-value=1.6e+02 Score=19.80 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=30.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccc
Q 013334 402 KFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTE 441 (445)
Q Consensus 402 ~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~~~~~ 441 (445)
.++-...+.=++.+...|..+...|-.=|+.|..++..+|
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE 44 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555666778888888888888888999998887765
No 182
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.94 E-value=1.4e+02 Score=18.66 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=14.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 013334 212 TGALDEKFSQTEFDLVQSVQQNADLR 237 (445)
Q Consensus 212 ~~~l~~~l~~~~~~l~~l~qe~~~L~ 237 (445)
...+-..|+....+|..+++++..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444555555566666666665554
No 183
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=23.70 E-value=2.5e+02 Score=21.48 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=21.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 176 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 213 (445)
Q Consensus 176 ~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~ 213 (445)
....|+.++..|..++..|......+..+.+.+|....
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665555555555555554443
No 184
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=23.42 E-value=1.5e+02 Score=28.06 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH-hHH
Q 013334 206 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP-----------EKLQRTLEEKKSIREEARDAEKLAMQ-SFQ 273 (445)
Q Consensus 206 ~~lk~e~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SP-----------e~lk~~l~e~k~~~~~l~~~e~~~~q-~~q 273 (445)
..++.-+.++.+.+...-..+. .+|.|..-... ++|...+++++..+.-....-+..++ .+.
T Consensus 66 kel~~l~~~~~~el~~y~~~l~------~qL~P~~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~e 139 (307)
T 2l7b_A 66 QELRALMDETMKELKAYKSELE------EQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTE 139 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------TCCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HhhcchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHhHHHHHHHHHHHHHHH----HHHHHHH
Q 013334 274 EKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLN-DDVVLDKSLEAKLIERQGKV----EQLDELQ 348 (445)
Q Consensus 274 ~k~~~~e~~~k~~~~l~~~~~~l~~~~e~~~~~k~~e~~~k~lk~kl~-~~~~~~~~L~~kl~e~q~k~----e~l~e~~ 348 (445)
+....+.-|..-++ ..+..+...++.+|. ....+...+...+.+++..+ +.++..+
T Consensus 140 elr~kL~Py~~EL~-------------------~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L~Py~e~~~~~~ 200 (307)
T 2l7b_A 140 ELRVRLASHLRKLR-------------------KRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRA 200 (307)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHCSSSCTTTTTHH
T ss_pred HHHHHHHHHHHHHH-------------------HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred HHHHHHHhh--------hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHH
Q 013334 349 QQLEKERNL--------KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 420 (445)
Q Consensus 349 ~~~~~e~~~--------~~eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~ 420 (445)
......+.. ..++++..+..+.+.+.....++.. .+++.-..+.....+++...+..+.++.....
T Consensus 201 ~~v~~~k~~~L~~ki~~~~e~Lr~~L~p~~~~~~~~l~~l~~------q~ee~~~ql~~~aeel~~kl~~~~eeLr~~l~ 274 (307)
T 2l7b_A 201 ATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKE------QVAEVRAKLEEQAQQIRLQAEAAQARLKSRFE 274 (307)
T ss_dssp HHHHHHHCCCCSSCSCCHHHHHHHHHHHHHHTCSCSSCCCCS------SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhh
Q ss_pred HHHHHHHHhHhhhhhhc
Q 013334 421 EIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 421 ~l~~~~~~Y~~~~~~~~ 437 (445)
-+...++.-...+...|
T Consensus 275 P~~e~lk~~l~~l~E~l 291 (307)
T 2l7b_A 275 PLAEDMQRQWAGQVEKV 291 (307)
T ss_dssp TCSCHHHHHHTTSSCCC
T ss_pred hHHHHHHHHHHHHHHHH
No 185
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=23.14 E-value=84 Score=21.78 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhH
Q 013334 360 EDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 430 (445)
Q Consensus 360 eel~~~~~~lkee~e~~~~~~e~~~~~~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~ 430 (445)
.+..+.+++++..+........ +....++++...++.+...+-+...|+..+..+...|++....|.
T Consensus 5 aefkqrlaaiktrlqalggsea----elaafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEA----ELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGG----THHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcHH----HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 4445556655555544332221 233355666666666667777777788888888877777777764
No 186
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=23.02 E-value=56 Score=23.46 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=21.1
Q ss_pred HHHHHHHhhcCCCCCChhhhCCCC-hhHHHHHHH
Q 013334 12 TEIVTILTETEIAVITENDLKNPN-PDFVSDLYT 44 (445)
Q Consensus 12 ~EIv~~L~~~~i~~~t~~dl~~Pt-~~~v~~ly~ 44 (445)
+|....|...|| |.+++.+|. ..+|..+|.
T Consensus 25 ~eW~~ll~~sGI---s~~~~k~~et~~~I~~F~~ 55 (65)
T 2lnh_A 25 PELKNLFDMCGI---SEAQLKDRETSKVIYDFIE 55 (65)
T ss_dssp TTHHHHHHHHTC---CHHHHTCTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHCHHHHHHHHHHHH
Confidence 567777888776 689998775 455555554
No 187
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.88 E-value=1.9e+02 Score=19.76 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 013334 205 LNKLKEKTGAL 215 (445)
Q Consensus 205 ~~~lk~e~~~l 215 (445)
....+.+-.+.
T Consensus 34 v~~ak~eA~RA 44 (52)
T 1jcd_A 34 AQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 188
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.71 E-value=1.2e+02 Score=17.58 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQL 351 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~ 351 (445)
.|+.+...+..+++.|++.++++
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666665555543
No 189
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.51 E-value=1.4e+02 Score=21.13 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 013334 177 VQEVDAKVKELRQTIQDLNK 196 (445)
Q Consensus 177 ~~el~~e~~~L~~~L~~l~~ 196 (445)
+.+|..+|..|..++..|..
T Consensus 39 v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 39 VEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555543
No 190
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.36 E-value=95 Score=32.20 Aligned_cols=19 Identities=5% Similarity=-0.116 Sum_probs=10.6
Q ss_pred CCCcchHHHHHHHHHHHHh
Q 013334 108 RPDATRTEYFLSAILNFCL 126 (445)
Q Consensus 108 ~P~~~R~~~iLSalINF~r 126 (445)
.-..+++-.+..+=..|.+
T Consensus 274 ~~~ak~i~~lc~~~H~ff~ 292 (575)
T 2i1j_A 274 VRVNKRILALCMGNHELYM 292 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3455566666655555554
No 191
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.35 E-value=77 Score=21.63 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 013334 216 DEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 256 (445)
Q Consensus 216 ~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk~~l~e~k~ 256 (445)
..+-+-++..+..+..++.+|+..+...-++.+..-+++..
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445566667777777777777766555555544444433
No 192
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.27 E-value=2.4e+02 Score=20.91 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013334 141 DLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 220 (445)
Q Consensus 141 e~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~el~~e~~~L~~~L~~l~~~q~~l~~~~~~lk~e~~~l~~~l~ 220 (445)
+++.+..+...++..+..+...... .+..+...+..|+.+|..++..-.....+|..+=.-|-.+.-+|.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~----------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAV----------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred hhHHHH
Q 013334 221 QTEFDL 226 (445)
Q Consensus 221 ~~~~~l 226 (445)
.....+
T Consensus 72 tYRkLL 77 (84)
T 1gk4_A 72 TYRKLL 77 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 193
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.77 E-value=2.7e+02 Score=21.31 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 013334 331 EAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQ 378 (445)
Q Consensus 331 ~~kl~e~q~k~e~l~e~~~~~~~e~~~~~eel~~~~~~lkee~e~~~~ 378 (445)
+.|+...-..++.++..+-.++....+..+..+.+|..|+.+++...+
T Consensus 42 E~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 42 DFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444556677777777777777777777778877777776543
No 194
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=21.14 E-value=4.7e+02 Score=23.82 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQQLEKERN-LKSEDATRAFENVKLEMESKRQDLEARQK 385 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~~~~~e~~-~~~eel~~~~~~lkee~e~~~~~~e~~~~ 385 (445)
.++..+...+.+++.|......+..... .....+...+..+...|.......+.+..
T Consensus 260 ~~e~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~ 317 (326)
T 3kbt_A 260 AFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRT 317 (326)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666555544322 23455666667777777776666655544
No 195
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.14 E-value=2.9e+02 Score=21.33 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 013334 212 TGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 248 (445)
Q Consensus 212 ~~~l~~~l~~~~~~l~~l~qe~~~L~~~Iv~SPe~lk 248 (445)
..+|..+|...+.+++...+....-....-..|+.+.
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN 43 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN 43 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 3455566666666677777777777777777777775
No 196
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=21.05 E-value=4.6e+02 Score=23.68 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 013334 287 KKMSKQSAQMQAILEQ 302 (445)
Q Consensus 287 ~~l~~~~~~l~~~~e~ 302 (445)
.+++..+..++.+++.
T Consensus 212 ~~~~~~~~~lQ~le~~ 227 (305)
T 2efl_A 212 THIPNIFQKIQEMEER 227 (305)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666667766654
No 197
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.03 E-value=2.7e+02 Score=21.00 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 145 LDEQRSELEDKISQLNAEIAAYNE 168 (445)
Q Consensus 145 l~~~~~~l~~~i~~l~~~~~~~~~ 168 (445)
+..+...|++++.+|.+++..+.+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666655533
No 198
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.89 E-value=1.9e+02 Score=19.18 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 013334 181 DAKVKELRQTIQDL 194 (445)
Q Consensus 181 ~~e~~~L~~~L~~l 194 (445)
+..+..|+..+.-|
T Consensus 4 Eekv~~Le~~ld~L 17 (46)
T 3swy_A 4 EEKVEQLGSSLDTL 17 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 199
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.57 E-value=2.6e+02 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013334 329 SLEAKLIERQGKVEQLDELQQ 349 (445)
Q Consensus 329 ~L~~kl~e~q~k~e~l~e~~~ 349 (445)
.++.++.+++.++-..+..+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIe 31 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALT 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544443
No 200
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.46 E-value=6.7e+02 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 013334 139 AEDLTRLDEQRSELEDKISQLNAEI 163 (445)
Q Consensus 139 ~~e~~~l~~~~~~l~~~i~~l~~~~ 163 (445)
++++-.+.+++.++..+++.|+.+.
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~r 93 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEK 93 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544443
No 201
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.39 E-value=3.9e+02 Score=24.03 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHH
Q 013334 330 LEAKLIERQGKVEQLDELQQQLEKERNL---KSEDATRAFENVKL 371 (445)
Q Consensus 330 L~~kl~e~q~k~e~l~e~~~~~~~e~~~---~~eel~~~~~~lke 371 (445)
+..++..++.++..++..+.+.+.+++. .+++.++..+++++
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333 23444444444333
No 202
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=20.08 E-value=48 Score=25.56 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCCChhhhC------CCChhHHHHHHHHHH-HHhcc
Q 013334 11 ATEIVTILTETEIAVITENDLK------NPNPDFVSDLYTRLL-IFLDV 52 (445)
Q Consensus 11 ~~EIv~~L~~~~i~~~t~~dl~------~Pt~~~v~~ly~~~l-~~~~~ 52 (445)
..-|..||+++|+| ++++|+. -=+|.|..++-.|.= .--|-
T Consensus 38 AKGifKyL~elGvP-as~~dv~aRg~qegWn~gFT~k~~gWAek~esGe 85 (115)
T 2es9_A 38 AKGILKYLHDLGVP-VSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGN 85 (115)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHhcccccCChhHHHHHHHHHHHhccCC
Confidence 34588999999997 9999984 346899999988887 55443
No 203
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=20.05 E-value=2.9e+02 Score=21.00 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Q 013334 387 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 437 (445)
Q Consensus 387 ~e~~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~~~Y~~~~~~~~ 437 (445)
+..+-..+-.++-++..+-.+|-..-.++.....++..+.+.|...|...+
T Consensus 37 iq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~lle~s~ 87 (88)
T 2pjw_H 37 IGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLMDRAA 87 (88)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666677788888888889999999999999999999999998887654
No 204
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.03 E-value=2e+02 Score=28.29 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=2.2
Q ss_pred HHHHHH
Q 013334 210 EKTGAL 215 (445)
Q Consensus 210 ~e~~~l 215 (445)
.+..++
T Consensus 52 n~~~el 57 (403)
T 4etp_A 52 NELQEL 57 (403)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 333333
No 205
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=20.01 E-value=3e+02 Score=24.65 Aligned_cols=37 Identities=11% Similarity=0.351 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 013334 390 VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 426 (445)
Q Consensus 390 ~~~~v~~le~~~~~~~~~~e~ei~~i~~~y~~l~~~~ 426 (445)
.-..+..++.+++.+.+.+..|+.+++.+|..+..-+
T Consensus 31 ~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Pl 67 (225)
T 2e50_A 31 AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPF 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 3455666777777888888888888888888776654
Done!