Query 013334
Match_columns 445
No_of_seqs 220 out of 315
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 08:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013334.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013334hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 66.0 22 0.0016 26.1 11.3 29 138-166 6-34 (107)
2 d1seta1 a.2.7.1 (A:1-110) Sery 65.2 23 0.0017 26.1 10.2 26 140-165 28-53 (110)
3 d2odgc1 a.140.1.1 (C:2-47) Inn 63.1 6.2 0.00045 24.6 4.4 39 5-50 2-41 (46)
4 d1gqea_ e.38.1.1 (A:) Polypept 51.5 83 0.0061 28.2 13.2 33 137-169 3-37 (362)
5 d2efla1 a.238.1.4 (A:1-288) Fo 49.3 70 0.0051 26.7 24.6 10 415-424 186-195 (288)
6 d2efka1 a.238.1.4 (A:10-288) C 48.8 70 0.0051 26.6 24.0 9 282-290 33-41 (279)
7 d1v9da_ a.207.1.1 (A:) Diaphan 45.2 63 0.0046 28.4 10.7 35 8-42 23-62 (332)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 34.6 76 0.0055 22.9 10.6 36 132-167 7-42 (107)
9 d1t98a2 a.47.6.1 (A:119-281) C 29.6 72 0.0052 24.8 6.8 55 238-301 47-105 (163)
10 d1h2vc3 a.118.1.14 (C:481-790) 28.7 1.6E+02 0.012 25.7 10.2 43 10-53 33-77 (310)
11 d1gqea_ e.38.1.1 (A:) Polypept 26.9 2E+02 0.015 25.4 15.4 20 238-257 41-60 (362)
12 d2es9a1 a.247.1.1 (A:11-107) H 25.4 16 0.0011 25.7 1.9 40 11-51 28-74 (97)
13 d1wrka1 a.39.1.5 (A:4-85) Trop 21.1 25 0.0018 24.3 2.4 28 8-44 32-59 (82)
14 d1v74b_ a.24.20.1 (B:) Colicin 20.4 6.8 0.00049 28.0 -0.9 21 92-113 44-64 (87)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=65.95 E-value=22 Score=26.14 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013334 138 IAEDLTRLDEQRSELEDKISQLNAEIAAY 166 (445)
Q Consensus 138 ~~~e~~~l~~~~~~l~~~i~~l~~~~~~~ 166 (445)
....+..+..+...+...+.++..++.++
T Consensus 6 ~~~~~q~lq~el~~~~~q~~~le~q~~E~ 34 (107)
T d1fxka_ 6 QLAQFQQLQQQAQAISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=65.17 E-value=23 Score=26.09 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013334 140 EDLTRLDEQRSELEDKISQLNAEIAA 165 (445)
Q Consensus 140 ~e~~~l~~~~~~l~~~i~~l~~~~~~ 165 (445)
+.+-.+..++.++..+++.|+.+.+.
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~ 53 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQ 53 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666555555554433
No 3
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.06 E-value=6.2 Score=24.58 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHHHHH-HHh
Q 013334 5 DYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFL 50 (445)
Q Consensus 5 ~FP~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~~~l-~~~ 50 (445)
.|-.|+..||...|..||||+ -|--+.-+.+|+.=| .++
T Consensus 2 ~y~~lSd~El~~lL~~y~I~H-------GPvVdstr~lyekkl~e~~ 41 (46)
T d2odgc1 2 NYADLSDTELTTLLRRYNIPH-------GPVVGSTRRLYEKKIFEYE 41 (46)
T ss_dssp GGGGSCHHHHHHHHHHTTCCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred chhhhcHHHHHHHHHHhCCCC-------CCcccchHHHHHHHHHHHH
Confidence 467799999999999999963 366777888888776 443
No 4
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=51.53 E-value=83 Score=28.24 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 013334 137 PIAEDLTRLDEQRSELED--KISQLNAEIAAYNEV 169 (445)
Q Consensus 137 ~~~~e~~~l~~~~~~l~~--~i~~l~~~~~~~~~~ 169 (445)
++.+.+..+..+...+.. .++.++.++.++...
T Consensus 3 ~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~ 37 (362)
T d1gqea_ 3 PVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAE 37 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 344555555555555543 344555555555443
No 5
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.31 E-value=70 Score=26.68 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 013334 415 LASKAEEIVE 424 (445)
Q Consensus 415 i~~~y~~l~~ 424 (445)
++.+|.....
T Consensus 186 a~~~Y~~~v~ 195 (288)
T d2efla1 186 SKADYSSILQ 195 (288)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 6
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.84 E-value=70 Score=26.56 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 013334 282 YQKTLKKMS 290 (445)
Q Consensus 282 ~~k~~~~l~ 290 (445)
|.+.+..|+
T Consensus 33 Yak~L~kL~ 41 (279)
T d2efka1 33 YAKQLRSLV 41 (279)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 7
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.17 E-value=63 Score=28.41 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHhhcCCCCCChhhhC-----CCChhHHHHH
Q 013334 8 RLSATEIVTILTETEIAVITENDLK-----NPNPDFVSDL 42 (445)
Q Consensus 8 ~l~~~EIv~~L~~~~i~~~t~~dl~-----~Pt~~~v~~l 42 (445)
.+|+.+|+.+|..|+-..++.+.|. -||++-+..+
T Consensus 23 k~~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE~~~l 62 (332)
T d1v9da_ 23 RMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 62 (332)
T ss_dssp CCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHH
T ss_pred CcCHHHHHHHHHhCCcccCCHHHHHHHHHhCcCHHHHHHH
Confidence 3899999999999976568887763 5888877666
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.60 E-value=76 Score=22.88 Aligned_cols=36 Identities=8% Similarity=0.258 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 132 MNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 167 (445)
Q Consensus 132 ~~~~~~~~~e~~~l~~~~~~l~~~i~~l~~~~~~~~ 167 (445)
...|..+..++..+..++..+...+.+....+.++.
T Consensus 7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667777766666666666654
No 9
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.63 E-value=72 Score=24.76 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=37.9
Q ss_pred hhhhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013334 238 SKIVQSPEKLQRTLEEKKSIR----EEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILE 301 (445)
Q Consensus 238 ~~Iv~SPe~lk~~l~e~k~~~----~~l~~~e~~~~q~~q~k~~~~e~~~k~~~~l~~~~~~l~~~~e 301 (445)
+.|+.|.+.=+|.+++-...+ ..|.+ +.-......|.+.+.+.+..++.++++-+
T Consensus 47 aeifd~Idl~QR~mDeQQ~~Vk~eIA~LL~---------qdW~~AI~~Ce~LL~eTs~tLRELqdtL~ 105 (163)
T d1t98a2 47 AEIFDSIDLTQRLMDEQQQQVKDDIAQLLN---------KDWRAAISSCELLLSETSGTLRELQDTLE 105 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHhHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 557888888889888876655 22222 44556778888888887777776666533
No 10
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.72 E-value=1.6e+02 Score=25.66 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=22.0
Q ss_pred CHHHHHHHHhhcCCC--CCChhhhCCCChhHHHHHHHHHHHHhccc
Q 013334 10 SATEIVTILTETEIA--VITENDLKNPNPDFVSDLYTRLLIFLDVL 53 (445)
Q Consensus 10 ~~~EIv~~L~~~~i~--~~t~~dl~~Pt~~~v~~ly~~~l~~~~~~ 53 (445)
++.||...|.+.--| .-..+|...|++ ++..||.+++.++|..
T Consensus 33 ~~eei~~~l~~i~~~~~~~~~~~~~~~~~-~~i~vfvqtll~~GSK 77 (310)
T d1h2vc3 33 TNDEIFSILKDVPNPNQDDDDDEGFSFNP-LKIEVFVQTLLHLAAK 77 (310)
T ss_dssp CHHHHHHHGGGCC-------------CCH-HHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHhhhccccccccccccccch-hHHHHHHHHHHHHccc
Confidence 455666666554211 111223334444 7889999999888864
No 11
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=26.86 E-value=2e+02 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=14.4
Q ss_pred hhhhcCHHHHHHHHHHHHHH
Q 013334 238 SKIVQSPEKLQRTLEEKKSI 257 (445)
Q Consensus 238 ~~Iv~SPe~lk~~l~e~k~~ 257 (445)
|.+...|++.+....+++..
T Consensus 41 P~fW~D~~kAqkl~KE~s~L 60 (362)
T d1gqea_ 41 PDVWNEPERAQALGKERSSL 60 (362)
T ss_dssp GGGGGSHHHHHHHHHHHHHH
T ss_pred ChhhhCHHHHHHHHHHHHHH
Confidence 66788888888777665443
No 12
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=25.44 E-value=16 Score=25.69 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCCChhhhC------CCChhHHHHHHHHHH-HHhc
Q 013334 11 ATEIVTILTETEIAVITENDLK------NPNPDFVSDLYTRLL-IFLD 51 (445)
Q Consensus 11 ~~EIv~~L~~~~i~~~t~~dl~------~Pt~~~v~~ly~~~l-~~~~ 51 (445)
..-|..||+++|+| ++++|+. -=+|.|..++--|.= .--|
T Consensus 28 AKGifKyLkelGVP-as~~dv~aRg~qegWn~gFT~K~~gWA~k~~sG 74 (97)
T d2es9a1 28 AKGILKYLHDLGVP-VSPEVVVARGEQEGWNPEFTKKVAGWAEKVASG 74 (97)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHhcccccCChhHHHHHHHHHHHhccC
Confidence 34588999999997 9999994 346889999888877 4444
No 13
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=21.14 E-value=25 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHhhcCCCCCChhhhCCCChhHHHHHHH
Q 013334 8 RLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYT 44 (445)
Q Consensus 8 ~l~~~EIv~~L~~~~i~~~t~~dl~~Pt~~~v~~ly~ 44 (445)
.++..|+..+|..+|+ + |++..+..++.
T Consensus 32 ~I~~~el~~~l~~lg~-~--------~t~~el~~~i~ 59 (82)
T d1wrka1 32 SISTKELGKVMRMLGQ-N--------PTPEELQEMID 59 (82)
T ss_dssp SBCHHHHHHHHHHTTC-C--------CCHHHHHHHHH
T ss_pred eEeHHHHHHHHHHcCC-C--------CCHHHHHHHHH
Confidence 3788999999999998 3 45555555544
No 14
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=20.36 E-value=6.8 Score=27.99 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.5
Q ss_pred HHHcCCCCCCCcccccCCCcch
Q 013334 92 VTTVNCPMNFTLKDLIRPDATR 113 (445)
Q Consensus 92 l~~~gv~~DFt~~DL~~P~~~R 113 (445)
+..||-. =|.+.|.|.|+|.|
T Consensus 44 l~eClss-iF~~AD~y~pd~dR 64 (87)
T d1v74b_ 44 ILNCGEE-LFMAAERFEPDADR 64 (87)
T ss_dssp HHHHHHH-HHHHHHTBCCSTTC
T ss_pred HHHHHHH-HHHHHHHcCCCcch
Confidence 3446555 58899999999998
Done!