Query 013335
Match_columns 445
No_of_seqs 177 out of 1348
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 1E-136 3E-141 982.7 29.7 431 1-431 1-434 (443)
2 PLN00221 tubulin alpha chain; 100.0 4E-114 9E-119 890.4 32.7 431 1-431 1-441 (450)
3 PTZ00335 tubulin alpha chain; 100.0 9E-113 2E-117 879.7 33.1 429 1-429 1-439 (448)
4 PTZ00010 tubulin beta chain; P 100.0 2E-112 3E-117 879.2 33.5 441 1-441 1-441 (445)
5 PLN00220 tubulin beta chain; P 100.0 2E-111 4E-116 873.5 33.3 439 1-439 1-440 (447)
6 cd02188 gamma_tubulin Gamma-tu 100.0 2E-109 3E-114 852.0 30.0 420 2-422 1-431 (431)
7 PLN00222 tubulin gamma chain; 100.0 4E-109 9E-114 853.1 32.1 426 1-427 2-443 (454)
8 cd02187 beta_tubulin The tubul 100.0 1E-108 2E-113 847.3 32.8 424 2-425 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 1E-108 2E-113 849.0 30.7 423 2-424 1-433 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 7E-108 1E-112 844.4 31.8 417 1-428 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 2E-104 4E-109 761.9 26.8 425 1-426 2-440 (448)
12 cd02190 epsilon_tubulin The tu 100.0 1E-100 3E-105 776.4 28.6 379 2-425 1-379 (379)
13 cd02189 delta_tubulin The tubu 100.0 2E-100 5E-105 789.5 30.8 410 4-423 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 3.9E-92 8.6E-97 718.3 29.5 381 3-424 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 1.4E-92 3.1E-97 678.1 16.0 404 1-419 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 1.9E-69 4.2E-74 521.3 15.6 352 42-433 6-358 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3.7E-66 8.1E-71 518.1 24.1 327 3-371 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 7.9E-50 1.7E-54 412.9 29.1 407 2-424 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 7.3E-52 1.6E-56 391.0 8.8 215 3-223 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 2E-37 4.3E-42 287.4 8.1 185 49-244 3-192 (192)
21 KOG2530 Members of tubulin/Fts 100.0 1.2E-32 2.6E-37 271.4 12.2 240 1-255 1-324 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 9.2E-32 2E-36 270.1 13.4 219 1-260 1-226 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 9.7E-27 2.1E-31 229.5 13.4 205 4-258 3-207 (303)
24 PF03953 Tubulin_C: Tubulin C- 99.9 3.2E-25 7E-30 191.7 9.8 123 261-383 1-126 (126)
25 TIGR00065 ftsZ cell division p 99.9 5.8E-25 1.3E-29 220.2 12.9 201 4-259 20-225 (349)
26 cd02201 FtsZ_type1 FtsZ is a G 99.9 3.1E-24 6.8E-29 212.5 12.5 209 4-261 3-211 (304)
27 PRK13018 cell division protein 99.9 5.2E-23 1.1E-27 207.0 13.1 200 4-258 31-235 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 4.8E-22 1E-26 181.4 12.7 149 82-242 17-180 (180)
29 PRK09330 cell division protein 99.9 2.8E-21 6E-26 194.7 11.5 203 3-259 15-222 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.5 2.5E-14 5.4E-19 121.4 4.3 66 2-73 1-70 (115)
31 COG0206 FtsZ Cell division GTP 99.3 1.3E-11 2.9E-16 122.3 11.3 149 105-262 74-222 (338)
32 smart00865 Tubulin_C Tubulin/F 98.6 2.8E-08 6.1E-13 84.3 2.3 114 246-382 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.2 0.008 1.7E-07 60.9 14.1 103 93-195 101-220 (345)
34 PRK14484 phosphotransferase ma 68.6 5.1 0.00011 34.4 3.1 43 113-158 41-83 (124)
35 PF03610 EIIA-man: PTS system 68.3 16 0.00034 30.6 6.0 34 111-144 38-71 (116)
36 cd00006 PTS_IIA_man PTS_IIA, P 66.3 19 0.00041 30.4 6.2 33 112-144 39-71 (122)
37 PF12953 DUF3842: Domain of un 65.7 6.6 0.00014 33.8 3.1 29 141-169 6-35 (131)
38 PF06908 DUF1273: Protein of u 62.9 27 0.00058 31.9 6.8 109 112-239 27-136 (177)
39 TIGR00824 EIIA-man PTS system, 62.0 26 0.00057 29.4 6.2 33 112-144 40-72 (116)
40 PLN02847 triacylglycerol lipas 59.8 9.5 0.00021 41.2 3.7 62 103-168 224-287 (633)
41 PRK09461 ansA cytoplasmic aspa 52.6 42 0.00091 33.9 6.9 94 108-209 63-157 (335)
42 cd00519 Lipase_3 Lipase (class 47.1 18 0.00039 33.9 3.1 73 101-178 99-171 (229)
43 cd00741 Lipase Lipase. Lipase 44.6 36 0.00078 29.6 4.5 63 103-169 1-63 (153)
44 cd00411 Asparaginase Asparagin 43.5 70 0.0015 32.1 6.8 94 108-209 60-155 (323)
45 PF00710 Asparaginase: Asparag 40.9 80 0.0017 31.5 6.8 94 108-209 54-148 (313)
46 PRK13660 hypothetical protein; 40.8 1.3E+02 0.0029 27.6 7.6 111 112-240 27-137 (182)
47 TIGR02364 dha_pts dihydroxyace 38.1 33 0.00071 29.4 3.0 42 113-157 41-84 (125)
48 TIGR02153 gatD_arch glutamyl-t 34.4 1.3E+02 0.0028 31.3 7.2 91 108-205 120-211 (404)
49 PF01764 Lipase_3: Lipase (cla 34.2 11 0.00023 32.1 -0.7 55 103-161 36-91 (140)
50 smart00870 Asparaginase Aspara 32.6 1.3E+02 0.0028 30.2 6.7 96 108-209 57-155 (323)
51 COG0572 Udk Uridine kinase [Nu 32.5 45 0.00097 31.5 3.2 27 135-162 9-35 (218)
52 TIGR00519 asnASE_I L-asparagin 32.0 1.1E+02 0.0024 30.9 6.2 94 108-209 59-158 (336)
53 PF01713 Smr: Smr domain; Int 31.8 1.7E+02 0.0036 22.6 6.0 53 114-169 9-67 (83)
54 PF03283 PAE: Pectinacetyleste 31.7 67 0.0014 32.8 4.6 50 105-161 132-183 (361)
55 KOG3178 Hydroxyindole-O-methyl 31.7 50 0.0011 33.3 3.6 41 122-167 167-207 (342)
56 PRK15088 PTS system mannose-sp 30.6 1.2E+02 0.0026 30.5 6.1 34 111-144 40-73 (322)
57 COG2893 ManX Phosphotransferas 30.6 1.3E+02 0.0028 26.5 5.6 62 99-165 29-90 (143)
58 PF11340 DUF3142: Protein of u 26.9 3.5E+02 0.0076 24.8 7.8 82 109-202 22-105 (181)
59 PRK04183 glutamyl-tRNA(Gln) am 26.7 1.9E+02 0.0042 30.2 7.0 90 108-205 133-223 (419)
60 COG1929 Glycerate kinase [Carb 26.5 1.1E+02 0.0024 31.1 4.9 100 89-208 196-301 (378)
61 KOG1794 N-Acetylglucosamine ki 26.3 2.6E+02 0.0057 27.8 7.2 83 59-163 13-99 (336)
62 PF02353 CMAS: Mycolic acid cy 26.2 90 0.0019 30.5 4.2 65 98-169 28-93 (273)
63 COG1528 Ftn Ferritin-like prot 26.0 40 0.00087 30.4 1.6 48 372-425 95-144 (167)
64 PF08259 Periviscerokin: Periv 25.0 32 0.00069 16.6 0.4 8 255-262 3-10 (11)
65 PF13508 Acetyltransf_7: Acety 23.8 89 0.0019 23.5 3.1 23 144-166 40-62 (79)
66 PF03096 Ndr: Ndr family; Int 23.4 1.3E+02 0.0029 29.6 4.8 78 93-183 65-143 (283)
67 PRK15414 phosphomannomutase Cp 22.3 5E+02 0.011 27.2 9.3 94 112-206 151-248 (456)
68 COG1109 {ManB} Phosphomannomut 22.1 3.1E+02 0.0068 28.9 7.7 90 112-206 158-250 (464)
69 cd06408 PB1_NoxR The PB1 domai 21.7 2.1E+02 0.0046 22.9 4.8 52 364-418 14-70 (86)
70 PLN02408 phospholipase A1 21.7 1.7E+02 0.0038 29.9 5.4 65 111-179 179-245 (365)
71 cd03089 PMM_PGM The phosphoman 20.6 2.8E+02 0.006 28.9 6.9 88 112-206 145-236 (443)
72 PTZ00489 glutamate 5-kinase; P 20.5 4.1E+02 0.0088 25.8 7.6 50 154-205 86-135 (264)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.4e-136 Score=982.70 Aligned_cols=431 Identities=53% Similarity=1.013 Sum_probs=422.1
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccC
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGP 80 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (445)
|||||+||+||||||||++||+++|+||||.++|.+.+..+.+.++.++||+|++.+||+||+|+|||||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999887777777899999999999999999999999999999999999
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcC
Q 013335 81 YGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (445)
Q Consensus 81 ~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp 160 (445)
++.+|+|+|++.|++|||||||+|+|+.|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|+|++|||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccc
Q 013335 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCL 240 (445)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (445)
||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||++|+++|.+.+++.+|+|.++|++||++++++|+++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccC
Q 013335 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (445)
Q Consensus 241 R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (445)
||||++|.||.+|.+|||||||+||+.++|+|+++..+..+++.|+.|+++++|.++|||++|+|++|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhcccccceeeecCCCceeeeccCCC---CCCccceeeecCChhHHHHHHHHHHHHHHhccccccccc
Q 013335 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW 397 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~ 397 (445)
+.++++++++.++|.|+..+|++|+|+++++++|.++| ...+.++|+|+|+|+|++.|+|+.+||++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999998 677899999999999999999999999999999999999
Q ss_pred ccCCCCChhcHHHHHHHHHHHHHHHHHHHhhccc
Q 013335 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAE 431 (445)
Q Consensus 398 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (445)
|.++||||+||.||++.+++|++||+++.+...+
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~ 434 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYL 434 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999766443
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=4e-114 Score=890.39 Aligned_cols=431 Identities=43% Similarity=0.839 Sum_probs=409.1
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCcc--ccccccccccccCCCCCccceeEEecCCCCccccccc
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTD--LQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRS 78 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~ 78 (445)
|||||+||+||||||||.+||+++|+||+|+++|.+..+.. ...++.++||+|+.+++|+|||||||+||++|+++++
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322 1345778999999999999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 79 GPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
++++++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||+||||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcc
Q 013335 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238 (445)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (445)
|||+.+.+++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccc
Q 013335 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (445)
Q Consensus 239 ~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (445)
++||||.++.|++++++||||||++||++++++|+++.....+++++|.+|++++|+++++++.++|+.|+|||+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999887667788899999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC--------CCccceeeecCChhHHHHHHHHHHHHHHhcc
Q 013335 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (445)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (445)
|++.++++.+.+.+++.++.+.|++|+|+++++++|.++|. ..+.++++++|+|+|.++|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999988764 3457899999999999999999999999999
Q ss_pred cccccccccCCCCChhcHHHHHHHHHHHHHHHHHHHhhccc
Q 013335 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAE 431 (445)
Q Consensus 391 krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (445)
||||||||+++||||+||.||+++|++|+++|+++.+..++
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~ 441 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAE 441 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999776544
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=9.5e-113 Score=879.73 Aligned_cols=429 Identities=43% Similarity=0.857 Sum_probs=407.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCcc--ccccccccccccCCCCCccceeEEecCCCCccccccc
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTD--LQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRS 78 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~ 78 (445)
|||||+||+||||||||.+||+++|+||+++++|.+..+.. ...+..++||+|+.+++|+|||||||+||++|+++++
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322 1245778999999999999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 79 GPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
++++++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcc
Q 013335 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238 (445)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (445)
||++.+++++|+|+...++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccc
Q 013335 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (445)
Q Consensus 239 ~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (445)
++||||.++.|++++++||||||++||++++++|+.+.....+++++|.+|++++|+++++++.++|..|+|||+++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999887767788999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC--------CCccceeeecCChhHHHHHHHHHHHHHHhcc
Q 013335 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (445)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (445)
|++.+.++.+.+.+++.++.+.|++|+|+++++++|+.+|. ..+.++++++|+|+|.++|+++.+||++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988889999999999999999988774 2467899999999999999999999999999
Q ss_pred cccccccccCCCCChhcHHHHHHHHHHHHHHHHHHHhhc
Q 013335 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
Q Consensus 391 krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~ 429 (445)
||||||||+++||||+||.||+++|++|+++|+++.+..
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999986553
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.5e-112 Score=879.23 Aligned_cols=441 Identities=90% Similarity=1.424 Sum_probs=417.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccC
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGP 80 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (445)
|||||+||+||||||||.+||+++|+||+++++|.+....+...++.++||+|+.+++|+||+|+||+||++|++++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999987755443334577899999999999999999999999999999888
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcC
Q 013335 81 YGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (445)
Q Consensus 81 ~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp 160 (445)
++.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccc
Q 013335 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCL 240 (445)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (445)
|+.+++++|+|++..+++++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999977789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccC
Q 013335 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (445)
Q Consensus 241 R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (445)
||||++|.|+.++++||||||++||++++++|+.+.....++++++.+|++++|++++++++++|.+|+|||+++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998776778899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCCCCccceeeecCChhHHHHHHHHHHHHHHhcccccccccccC
Q 013335 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~ 400 (445)
+.++++...+.+++.++.+.|++|+|+++++++|+++|...++++++++|+|+|..+|+++.+||++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHHHHHHHHHHhhccccCcCcchhhh
Q 013335 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEDYYEDEEEE 441 (445)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~ 441 (445)
+||||+||.||+++|++|+++|+++.+...+.+...|+|||
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~ 441 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEE 441 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhh
Confidence 99999999999999999999999998775333322444444
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.7e-111 Score=873.45 Aligned_cols=439 Identities=97% Similarity=1.505 Sum_probs=415.1
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccC
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGP 80 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (445)
|||||+||+||||||||.+||+++|+||+++++|.+..+.+...++.++||+|+++++|+||+||||+||++|+++++++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999887765544334577899999999999999999999999999999999
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcC
Q 013335 81 YGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (445)
Q Consensus 81 ~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp 160 (445)
++.+|++++++++++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccc
Q 013335 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCL 240 (445)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (445)
++.+++++|+|++..++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|.++|++||+.|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999987899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccC
Q 013335 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (445)
Q Consensus 241 R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (445)
||||.++.++.+++++|||+|++||++++++|+.......++++++.+++++++.++++++++++.+|+||++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988766678899999999999999999998999999999999999999
Q ss_pred CChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCCCCccceeeecCChhHHHHHHHHHHHHHHhcccccccccccC
Q 013335 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~ 400 (445)
+.+.++...+.+++.++.+.|++|+|+++++++|+++|...+.++++|+|+|+|..+|+++.+||++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999999988888999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHHHHHHHHHHhhcccc-CcCcchh
Q 013335 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEE-DYYEDEE 439 (445)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~-~~~~~~~ 439 (445)
+||||+||.||+++|++|+++|+++.+...+. ++|+|+|
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~ 440 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEE 440 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99999999999999999999999987653211 2455543
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.6e-109 Score=852.02 Aligned_cols=420 Identities=38% Similarity=0.757 Sum_probs=398.4
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCC
Q 013335 2 REILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPY 81 (445)
Q Consensus 2 ~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 81 (445)
||||+||+||||||||.+||+++|+||+++++|.+..+.+...+..++||+|+++++|+|||||||+||++|++++++++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999998876554333356778999999999999999999999999999999998
Q ss_pred CcccCCCceeeccC--CCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhc
Q 013335 82 GQVFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (445)
Q Consensus 82 ~~~f~~~~~~~~~~--~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~dey 159 (445)
+++|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999998 99999999965 7999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEEecCCCC-CcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcc
Q 013335 160 PDRMMLTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238 (445)
Q Consensus 160 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (445)
|++.+++++|+|++.. ++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..|+|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998654 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhcccccccCcccccccccccccccc-cccccccCHHHHHHccccccccccccCC-CCCchhheeec
Q 013335 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRSLTVPELTQQMWDAKNMMCAADP-RHGRYLTASAM 316 (445)
Q Consensus 239 ~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 316 (445)
++||||.+|.|+.++++||||||++||++++++|+.+.. ...++..+|.+|++.+|+++++|+.+++ .+|+|||++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999876 4667889999999999999999999998 89999999999
Q ss_pred cccCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC---CCccceeeecCChhHHHHHHHHHHHHHHhccccc
Q 013335 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 393 (445)
Q Consensus 317 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krA 393 (445)
+||++.++++...+.+++.+..+.|++|+|+++++++|+.+|. +.+.++++++|+|+|.++|+++.+||++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999988888889999999999999988874 4578999999999999999999999999999999
Q ss_pred ccccccCCCCC---hhcHHHHHHHHHHHHHHH
Q 013335 394 FLHWYTGEGMD---EMEFTEAESNMNDLVSEY 422 (445)
Q Consensus 394 flH~Y~~~Gme---e~eF~ea~~~l~~l~~~Y 422 (445)
|||||+++||| ++||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=4.1e-109 Score=853.11 Aligned_cols=426 Identities=35% Similarity=0.695 Sum_probs=399.9
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccC
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGP 80 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (445)
|||||+||+||||||||.+||+++|+||+++++|.+..+.+...+..++||+|+.+++|+|||||||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999999887754433334677899999999999999999999999999999988
Q ss_pred CCcccCCCceeeccC--CCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 81 YGQVFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 81 ~~~~f~~~~~~~~~~--~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
++++|++++++.+++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 889999999999996 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCC-CCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCc
Q 013335 159 YPDRMMLTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 237 (445)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (445)
||++.+++++|+|++. .++++++|||++|+|++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999853 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccchhhhcccccccCcccccccccccccccc-cccccccCHHHHHHccccccccccccCCCC-----Cchh
Q 013335 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRSLTVPELTQQMWDAKNMMCAADPRH-----GRYL 311 (445)
Q Consensus 238 ~~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 311 (445)
+++||||.+|.|++++++||||||++||++++++|+.... ...++..++.++++++|.++++|+.++|.. |+||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997642 345677899999999999999999888877 9999
Q ss_pred heeeccccCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC---CCccceeeecCChhHHHHHHHHHHHHHHh
Q 013335 312 TASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMASTFIGNSTSIQEMFRRVSEQFTAM 388 (445)
Q Consensus 312 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m 388 (445)
|+++++||++.+.++.+.+.+++.++.+.|++|+|+++++++|.++|. ..+.++++|+|+|+|.++|+++.+||++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999998884 46789999999999999999999999999
Q ss_pred cccccccccccCCCCC----hhcHHHHHHHHHHHHHHHHHHHh
Q 013335 389 FRRKAFLHWYTGEGMD----EMEFTEAESNMNDLVSEYQQYQD 427 (445)
Q Consensus 389 ~~krAflH~Y~~~Gme----e~eF~ea~~~l~~l~~~Y~~~~~ 427 (445)
|+||||||||+++||+ ++||.||+++|++|+++|+++..
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~ 443 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACES 443 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999993 89999999999999999999753
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.1e-108 Score=847.35 Aligned_cols=424 Identities=87% Similarity=1.407 Sum_probs=405.7
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCC
Q 013335 2 REILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPY 81 (445)
Q Consensus 2 ~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 81 (445)
||||+||+||||||||.+||+++|+||+++++|.+....+...+..++||+|+.+++|+||+|+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999988876544433335678999999999999999999999999999998888
Q ss_pred CcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCC
Q 013335 82 GQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (445)
Q Consensus 82 ~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~ 161 (445)
+.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCccccc
Q 013335 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLR 241 (445)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R 241 (445)
+.+++++|+|+...++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999999766799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccCC
Q 013335 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (445)
Q Consensus 242 ~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (445)
|||.+|.|+.++++||||||++||++++++|+.+.....++++++.+|++++|.+++++..++|.+|+|||+++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987666788899999999999999999888999999999999999999
Q ss_pred ChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCCCCccceeeecCChhHHHHHHHHHHHHHHhcccccccccccCC
Q 013335 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~~ 401 (445)
.+.++.+.+.+++.+..+.|++|+|+++++++|+++|...+.++++++|+|+|.++|+++.++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 99999999999988889999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHHHHH
Q 013335 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (445)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (445)
||||+||.||+++|++|+++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999986
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1e-108 Score=848.97 Aligned_cols=423 Identities=43% Similarity=0.845 Sum_probs=402.5
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCcc--ccccccccccccCCCCCccceeEEecCCCCcccccccc
Q 013335 2 REILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTD--LQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSG 79 (445)
Q Consensus 2 ~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~ 79 (445)
||||+||+||||||||.+||+++|+||+|+++|.+..... ...+..++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987654332 23457889999999999999999999999999999988
Q ss_pred CCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhc
Q 013335 80 PYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (445)
Q Consensus 80 ~~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~dey 159 (445)
+.+.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCccc
Q 013335 160 PDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 239 (445)
Q Consensus 160 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (445)
|++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997678899999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeecccc
Q 013335 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 319 (445)
Q Consensus 240 ~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 319 (445)
+||||.++.|+++++++|||||++||++++++|+++.....++.++|.+|++++|+++++|+.+++..|+||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999998876677888999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC--------CCccceeeecCChhHHHHHHHHHHHHHHhccc
Q 013335 320 KMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~k 391 (445)
++.++++.+.+.+++.++.+.|++|+|+++++++|+.+|. ..++++++++|+|+|.++|+++.++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888889999999999999999998774 24578999999999999999999999999999
Q ss_pred ccccccccCCCCChhcHHHHHHHHHHHHHHHHH
Q 013335 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (445)
Q Consensus 392 rAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (445)
|||||||+++||||+||.||+++|++|+++|++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~ 433 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=6.9e-108 Score=844.40 Aligned_cols=417 Identities=34% Similarity=0.675 Sum_probs=393.6
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhC-CCCCCCCCCCccccccccccccccCC-----CC--CccceeEEecCCCCc
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHG-IDPTGKYQGDTDLQLERINVYYNEAS-----CG--RYVPRAVLMDLEPGT 72 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~-i~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~llvD~e~~~ 72 (445)
|||||+||+||||||||.+||+++|+||+ ++++|.+ .+..++||++.. .+ +|+|||||||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777654 356789998532 23 499999999999999
Q ss_pred cccccccCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHH
Q 013335 73 MDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (445)
Q Consensus 73 i~~i~~~~~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~ll 152 (445)
|+++++++++++|++++++++++|+|||||+|||..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCC-------------
Q 013335 153 SKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLST------------- 219 (445)
Q Consensus 153 e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~------------- 219 (445)
|.|+|+||++.+++++|+|+ ..++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 5788999999999999999999999999999999999988777663
Q ss_pred --------------CCccchhHHHHHHhccCcccccCCCCCccchhhhcccccccCcccccccccccccccccccccccC
Q 013335 220 --------------PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLT 285 (445)
Q Consensus 220 --------------~~~~~~N~~ia~~i~~~t~~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t 285 (445)
+.|+++|++||++|+++|.++||||.+|.|+.++.+||||||++||++++++|+.+.....+...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 789999999999999999999999999999999999999999999999999999876666678899
Q ss_pred HHHHHHccccccccccccCCCCCchhheeeccccCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCCCCccce
Q 013335 286 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAS 365 (445)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~ 365 (445)
|.+|++++|+++++|+.++|.+|+|||+++++||++.+.++.+.+.+++. .+.|++|+|+++++++|+++|...+.++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999889999998888764 4899999999999999999999999999
Q ss_pred eeecCChhHHHHHHHHHHHHHHhcccccccccccCCCCChhcHHHHHHHHHHHHHHHHHHHhh
Q 013335 366 TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (445)
Q Consensus 366 ~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (445)
++++|+|+|.++|+++.+||++||+||||||||+ +|||++||.||+++|++|+++|+++...
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 7999999999999999999999999744
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=1.9e-104 Score=761.91 Aligned_cols=425 Identities=37% Similarity=0.733 Sum_probs=399.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccC
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGP 80 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (445)
++||||+|+||||||||.+||+++|.||||.++|......++..++.++||++..++.|+|||||||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 68999999999999999999999999999999999766666677889999999999999999999999999999999999
Q ss_pred CCcccCCCceeec--cCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 81 YGQVFRPDNFVFG--QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 81 ~~~~f~~~~~~~~--~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
++++|+++|++.. ..|||||||.||. +|+++.|+|+|.|+|++|.||+|.||+++||++||||||+||.|+|+|+|+
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999998774 4689999999975 699999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCC-CCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCc
Q 013335 159 YPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 237 (445)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (445)
||||.+.+++|||.. .++|++|||||++|+|++|.+.+|+++++||.||.++|.+.+.+.+|+|.++|++||.++++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999984 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccchhhhcccccccCccccccccccccccccccc--ccccCHHHHHHccccccccccccCC---CCCchhh
Q 013335 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ--YRSLTVPELTQQMWDAKNMMCAADP---RHGRYLT 312 (445)
Q Consensus 238 ~~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~--~~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 312 (445)
.++||||+++.++..|...|+|+|++||+++++.|++++.... +++.|+.|.+++++.++++|.+..+ ....|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 9999999999999999999999999999999999999876544 5888999999999999999998765 3346899
Q ss_pred eeeccccCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCC---CCCccceeeecCChhHHHHHHHHHHHHHHhc
Q 013335 313 ASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMF 389 (445)
Q Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~ 389 (445)
...++.|.+.|..+..++.+++.++...|++|.|.++.+......| ..++.|+.+|+|+|+|...|++++.+||||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888899999999999988765554 4578899999999999999999999999999
Q ss_pred ccccccccccCCCCChh---cHHHHHHHHHHHHHHHHHHH
Q 013335 390 RRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEYQQYQ 426 (445)
Q Consensus 390 ~krAflH~Y~~~Gmee~---eF~ea~~~l~~l~~~Y~~~~ 426 (445)
+||||||.|.++||+++ ||.|+++.+++++++|+...
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~ 440 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAE 440 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998 99999999999999999863
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.2e-100 Score=776.37 Aligned_cols=379 Identities=37% Similarity=0.733 Sum_probs=364.9
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCC
Q 013335 2 REILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPY 81 (445)
Q Consensus 2 ~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~ 81 (445)
||||+||+||||||||.+||+++|.|| |+||+|+||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 799999999999999999999999997 68999999999999999999888
Q ss_pred CcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCC
Q 013335 82 GQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (445)
Q Consensus 82 ~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~ 161 (445)
+++|++++++.+++|+|||||+||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCccccc
Q 013335 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLR 241 (445)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R 241 (445)
+.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++|
T Consensus 131 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 999999999996 5888999999999999999999999999999997 699999999999999999999
Q ss_pred CCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccCC
Q 013335 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (445)
Q Consensus 242 ~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (445)
|||.+|.|+.++.++|||||++||++++++|+.+.....+++.++.+|++.+++++++|+.+++.+|+||++++++||++
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999886666678899999999999999999988999999999999999999
Q ss_pred ChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCCCCccceeeecCChhHHHHHHHHHHHHHHhcccccccccccCC
Q 013335 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~~ 401 (445)
.+.++.+.+.+++.+ ..|++|+|+++++++|+++|...+.++++++|+|+|..+|+++.+||++||+||||||||+++
T Consensus 278 ~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~e 355 (379)
T cd02190 278 SVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQV 355 (379)
T ss_pred CHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCC
Confidence 999999988887665 779999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHHHHH
Q 013335 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (445)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (445)
||||+||.||+++|++++++|+++
T Consensus 356 G~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 356 GMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=2.3e-100 Score=789.48 Aligned_cols=410 Identities=28% Similarity=0.553 Sum_probs=378.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCC-
Q 013335 4 ILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYG- 82 (445)
Q Consensus 4 IItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~- 82 (445)
||+||+||||||||.+||+++|+||+++++|.+. ...+..++||.|..+++|+||+|+||+||++|+++++++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998887653 12456789999999999999999999999999999987643
Q ss_pred -cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCC
Q 013335 83 -QVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (445)
Q Consensus 83 -~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~ 161 (445)
++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCccccc
Q 013335 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLR 241 (445)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R 241 (445)
+.+++++|+|+ ..+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||++|+++|.|.|
T Consensus 158 ~~~~~~~v~P~-~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPY-TTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCC-CCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 99999999997 47899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------CCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccc---cccccccc--------
Q 013335 242 F-P-------GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMW---DAKNMMCA-------- 302 (445)
Q Consensus 242 ~-~-------~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 302 (445)
+ + |..+.++.+++++|||+|++||++++++|+++.....++.++|.+++++++ .+++++..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 7 5 346899999999999999999999999999987777788999999999966 55565544
Q ss_pred -----------cCCCCCchhheeeccccCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC--CCccceeeec
Q 013335 303 -----------ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--GLKMASTFIG 369 (445)
Q Consensus 303 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--~~~~s~~~l~ 369 (445)
+++..++||++++++||+..+.++...+ ++.+.|++|+|+++++++|..++. ..++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~ 391 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVS 391 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEe
Confidence 3466899999999999998777766433 356889999999999999988775 3789999999
Q ss_pred CChhHHHHHHHHHHHHHHhcccccccccccCCCCChhcHHHHHHHHHHHHHHHH
Q 013335 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423 (445)
Q Consensus 370 N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 423 (445)
|+|+|..+|+++++||++||+||||||||+++||||+||.||++.|++|+++|+
T Consensus 392 Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 392 NSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=3.9e-92 Score=718.32 Aligned_cols=381 Identities=51% Similarity=0.943 Sum_probs=364.5
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCC
Q 013335 3 EILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYG 82 (445)
Q Consensus 3 EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (445)
|||+||+||||||||.+||+++ |+||+||++|++++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999976 9999999999999998888
Q ss_pred cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCc
Q 013335 83 QVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (445)
Q Consensus 83 ~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~ 162 (445)
.+|++++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++++|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccccC
Q 013335 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRF 242 (445)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R~ 242 (445)
.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999996666689999999999999999999999999999999999888888999999999999999999999999
Q ss_pred CCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccCCC
Q 013335 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (445)
Q Consensus 243 ~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (445)
||.++.|+.+++++|+|||++||++++++|+++.....++..++.+++++++.+++++..+++..|+||++++++||+..
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999866666788899999999999999999899999999999999999999
Q ss_pred hhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC-CCccceeeecCChhHHHHHHHHHHHHHHhcccccccccccCC
Q 013335 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT-GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~~ 401 (445)
+.++.+.+.+++.+.... +|+|+++++++|+++|. ..++++++++|+|+|.++|+++.++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 999999888887665544 89999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHHHHH
Q 013335 402 GMDEMEFTEAESNMNDLVSEYQQ 424 (445)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~ 424 (445)
||||+||.||+++|++++++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999974
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=1.4e-92 Score=678.13 Aligned_cols=404 Identities=42% Similarity=0.818 Sum_probs=382.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccc--cccccccccccCCCCCccceeEEecCCCCccccccc
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDL--QLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRS 78 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~--~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~ 78 (445)
|||||+|++||+|.|||+++|+++|.||||+++|....+++. ..+.+++||+++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999988765543 34577899999999999999999999999 999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 79 GPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
++|+.+|||++++.|+++++||+|+|+|+.|+|+.|..+++||+.++.|..||||.+|||+|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcc
Q 013335 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238 (445)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (445)
|+||..+.++++|++..+..+++|||++|+.+...+++|+++++||++++.+|++.+.+++|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccc
Q 013335 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (445)
Q Consensus 239 ~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (445)
++||+|.+|.||.+|++||+||| + ++|+.+.......+.++.+++...|.+.++|++|+|.+|||+|+++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999888777788999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCCCCccceeeecCChhHHHHHHHHHHHHHHhcccccccccc
Q 013335 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398 (445)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y 398 (445)
|++.|+++..++..+|.+.+++|++-.-.+ -..-+..+.+|+|+|+|+|++.+.++..+|+.||.||||||||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~g-------g~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwy 385 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPG-------GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 385 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccC-------cchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeec
Confidence 999999999999999999999998722110 0112356889999999999999999999999999999999999
Q ss_pred cCCCCChhcHHHHHHHHHHHH
Q 013335 399 TGEGMDEMEFTEAESNMNDLV 419 (445)
Q Consensus 399 ~~~Gmee~eF~ea~~~l~~l~ 419 (445)
.++||||+||.||+++|..|.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999998875
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=1.9e-69 Score=521.35 Aligned_cols=352 Identities=88% Similarity=1.370 Sum_probs=332.3
Q ss_pred ccccccccccccCCCCCccceeEEecCCCCccccccccCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHH
Q 013335 42 LQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 121 (445)
Q Consensus 42 ~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir 121 (445)
.+..+.+++|.+...++|+||+|+|||+|++++.++.+++..+|+|++ +++| .|+|..|.++.|.
T Consensus 6 ~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------ 70 (369)
T KOG1375|consen 6 LQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------ 70 (369)
T ss_pred ceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc------
Confidence 356788999999999999999999999999999999999999999999 4444 8999999988877
Q ss_pred HHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCccee
Q 013335 122 KEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV 201 (445)
Q Consensus 122 ~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~ 201 (445)
.||+|||||++||++||||||+|++++..++++||.+.+.++++.|+++ ++++++|||+.|++..|.+++|.+++
T Consensus 71 ----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~c 145 (369)
T KOG1375|consen 71 ----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFC 145 (369)
T ss_pred ----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccc
Confidence 9999999999999999999999999999999999999999999999966 99999999999999999999999999
Q ss_pred ecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccccCCCCCccchhhhcccccccCcccccccccccccccccccc
Q 013335 202 LDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281 (445)
Q Consensus 202 ~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~ 281 (445)
+||++|+++|.+.++++.++ ++|..+||+|.+|.++.++..|++|+|++||+.++++|+......++
T Consensus 146 idNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~ 212 (369)
T KOG1375|consen 146 IDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY 212 (369)
T ss_pred cccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccc
Confidence 99999999999999988877 88999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHccccccccccccCCCCCchhheeeccccCCChhHHHHHHHHhhcccccceeeecCCCceeeeccCCCCCC
Q 013335 282 RSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGL 361 (445)
Q Consensus 282 ~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~ 361 (445)
+.++++++++++|+.+++|..++ ||+++.++|| +.+++++....++.|++..|++|+|+++|..+|..||...
T Consensus 213 ~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl 285 (369)
T KOG1375|consen 213 RALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL 285 (369)
T ss_pred ccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc
Confidence 99999999999999999999887 9999999999 6788888888889999999999999999999999999999
Q ss_pred ccceeeecCChhHHHHHHHHHHHHHHhcccccccccccCCCCChhcHHHHHHHHHHHHHHHHHHH-hhccccC
Q 013335 362 KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ-DATAEED 433 (445)
Q Consensus 362 ~~s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~-~~~~~~~ 433 (445)
..+.+.++|+|+|.+.|+++.++|..||+||||||||+++||+|+||+||..++++++.+|+++. +...+++
T Consensus 286 kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~~~ 358 (369)
T KOG1375|consen 286 KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAEEE 358 (369)
T ss_pred cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999994 4443333
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3.7e-66 Score=518.13 Aligned_cols=327 Identities=48% Similarity=0.873 Sum_probs=305.1
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCC
Q 013335 3 EILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYG 82 (445)
Q Consensus 3 EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (445)
|||+||+||||||||++||+++ |+||+|+++++.++..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999853 9999999999999888877
Q ss_pred cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCc
Q 013335 83 QVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (445)
Q Consensus 83 ~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~ 162 (445)
.+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++++|.|||+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccccC
Q 013335 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRF 242 (445)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R~ 242 (445)
.+++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+....+.|+++|++||++|+++|.++|+
T Consensus 122 ~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 99999999985444 79999999999999999999999999999999998888888899999999999999999999999
Q ss_pred CCCCccchhhhcccccccCcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccCCC
Q 013335 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (445)
Q Consensus 243 ~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (445)
||.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++.++++++.+++..++++++.+++||+..
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 99999999999999999999999999999998755555677889999999999999998888888999999999999998
Q ss_pred hhHHHHHHHHhhcccccceeeecCCCceeeeccCCCC-CCccceeeecCC
Q 013335 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT-GLKMASTFIGNS 371 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~ 371 (445)
..++.+.+..++.+..+. +|+|++++++.|+.++. ..+.++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 899998888887765554 89999999999998887 678889999996
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=7.9e-50 Score=412.88 Aligned_cols=407 Identities=21% Similarity=0.244 Sum_probs=287.9
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCC----CCCccceeEEecCCCCcccccc
Q 013335 2 REILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEAS----CGRYVPRAVLMDLEPGTMDSVR 77 (445)
Q Consensus 2 ~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~llvD~e~~~i~~i~ 77 (445)
|||||||+||++|+||+||||.|-..+. |.++.+....+++++||++. ..+|+||+|++|++++...--+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~------y~~~~~~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFG------YDPDSPASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcC------CCCCCccccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999943332 33333334567899999975 5689999999999997543221
Q ss_pred ccC----------------CCcccCCCceeec-----cCCCCCCCCCCccc---cchhhHHHHHHHHHHHHhhcCCCCce
Q 013335 78 SGP----------------YGQVFRPDNFVFG-----QSGAGNNWAKGHYT---EGAELIDSVLDVVRKEAENCDCLQGF 133 (445)
Q Consensus 78 ~~~----------------~~~~f~~~~~~~~-----~~~~gnnwa~G~~~---~g~~~~e~~~d~ir~~~E~cD~lqgf 133 (445)
.+. .+-.|||+++..- ..+.+++|+.|+-. .+.+..|+++|+||+++|+||+||||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 111 1235899988653 34566677766532 35567799999999999999999999
Q ss_pred eEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCC----CcccchhhHHHHHHHHHhhcCCcceeecch-hhh
Q 013335 134 QVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV----SDTVVEPYNATLSVHQLVENADECMVLDNE-ALY 208 (445)
Q Consensus 134 ~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~-~l~ 208 (445)
|+++|++||| ||+|+.++|.|+|||||+.++++++.|.... .+.++++||++|++++|.+++|+++|+.-. .+|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999996432 257899999999999999999999999543 333
Q ss_pred hhhhc-----ccCCCCCCccchhHHHHHHhccCcccccCCCCCccchhhhcccccccCcccccccccccccccccccccc
Q 013335 209 DICFR-----TLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRS 283 (445)
Q Consensus 209 ~~~~~-----~~~~~~~~~~~~N~~ia~~i~~~t~~~R~~~~~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~ 283 (445)
..... .+.+...+..+..+++|.+|+++|.++|..+.. .+|.+|+.+|.+..|.........|+... ..
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gRki~~~~~a~P~p~~-----~~ 307 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGRKVVAAGLALPFPMV-----GG 307 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccchhhhhccCCCCCCC-----CC
Confidence 32211 123333456677899999999999999998765 57999999999877744444445777652 23
Q ss_pred cCHHHHHHccccc--cccccccC-CCCCchhheeeccccCCChh-------------------HHHHHHHHh-hcccccc
Q 013335 284 LTVPELTQQMWDA--KNMMCAAD-PRHGRYLTASAMFRGKMSTK-------------------EVDEQMINV-QNKNSSY 340 (445)
Q Consensus 284 ~t~~~l~~~~~~~--~~~~~~~~-~~~~~~ls~~~~~RG~~~~~-------------------~~~~~~~~~-~~~~~~~ 340 (445)
.++.|++..+-.. -.++ .++ +...+++++++++||....+ .+.+.+... +......
T Consensus 308 ~~l~d~L~~~~~~~~~~~l-~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s 386 (493)
T cd06060 308 QDLIDFLDQSDGAVPWLQL-TPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGS 386 (493)
T ss_pred CcHHHHHHhcCCCCCcccc-CCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCc
Confidence 4566666654221 1222 222 33467999999999964110 011111110 0000000
Q ss_pred e----eeec----CCCceeeec-cCCCC--------------CCcc--ceeeecCChhHHHHHHHHHHHHHHhccccccc
Q 013335 341 F----VEWI----PNNVKSTVC-DIPPT--------------GLKM--ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395 (445)
Q Consensus 341 f----~~w~----p~~~~~~~~-~~~~~--------------~~~~--s~~~l~N~t~i~~~l~~l~~~~~~m~~krAfl 395 (445)
+ +.=+ |.+|..... .+... .++. .++.|.|++++.+.|+.++.++.++--+| +
T Consensus 387 ~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~ 464 (493)
T cd06060 387 MSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--K 464 (493)
T ss_pred chhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--h
Confidence 0 0000 111110000 00000 0111 23668999999999999999999999999 9
Q ss_pred ccccCCCCChhcHHHHHHHHHHHHHHHHH
Q 013335 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (445)
Q Consensus 396 H~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (445)
|.|...|+|+|||.|+.+.|.++.++|++
T Consensus 465 ~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 465 ASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred hcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=7.3e-52 Score=391.02 Aligned_cols=215 Identities=49% Similarity=0.966 Sum_probs=200.8
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCC
Q 013335 3 EILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYG 82 (445)
Q Consensus 3 EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (445)
|||+||+||||||||.+||++++.||+++++ ........+.++||++...++|+||+|+||+||+++++++.++.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----cccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999877 222234567789999999999999999999999999999888777
Q ss_pred cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCc
Q 013335 83 QVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (445)
Q Consensus 83 ~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~ 162 (445)
.+|++++++.+++|+||||+.||+..|+++.++++|+||+.+|+||.+|||+++||+|||||||+++.|++.||++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCcc
Q 013335 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFG 223 (445)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~ 223 (445)
.+++++|+|+ .. +.++++||++++|++|.+++|+++++||++|.++|.+.+++.+|+|+
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999998 44 99999999999999999999999999999999999999998888775
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=2e-37 Score=287.36 Aligned_cols=185 Identities=39% Similarity=0.700 Sum_probs=171.9
Q ss_pred cccccCCCCCccceeEEecCCCCccccccccCCCcccCCCceeeccCCCCCCCCCCccc-----cchhhHHHHHHHHHHH
Q 013335 49 VYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYT-----EGAELIDSVLDVVRKE 123 (445)
Q Consensus 49 ~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~~f~~~~~~~~~~~~gnnwa~G~~~-----~g~~~~e~~~d~ir~~ 123 (445)
.+|.++ ++.||+|++|+|+++++.+..++.+..|++.+.+.++.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 456544 78999999999999999998777778899999999999999999999998 8999999999999999
Q ss_pred HhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeec
Q 013335 124 AENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203 (445)
Q Consensus 124 ~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~d 203 (445)
+|+| ++|+++||++||||||+|+.+++.++ +||+.. ++++++|. ..|..+++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 57889999999999999999999999999
Q ss_pred chhhhhhhhcccCCCCCCccchhHHHHHHhccCcccccCCC
Q 013335 204 NEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPG 244 (445)
Q Consensus 204 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R~~~ 244 (445)
|++|.++|.+.+.+ .+.|+++|++||++|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 68999999999999999999999986
No 21
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.98 E-value=1.2e-32 Score=271.38 Aligned_cols=240 Identities=24% Similarity=0.363 Sum_probs=166.6
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCC----CCccceeEEecCCCCccccc
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASC----GRYVPRAVLMDLEPGTMDSV 76 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~----~~~~pR~llvD~e~~~i~~i 76 (445)
||||+|||+|+.+|++|+||||+|-.-.++.++... ++......+++++.+.+ -+|+||++++|++.......
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~---~~~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~ 77 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEE---PPGELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTLK 77 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccC---ChhhcCcchhhhhccccccCceeeccceeEEecCccccccc
Confidence 999999999999999999999999433444433221 11111112899998754 47999999999998543110
Q ss_pred ------------------------cccC-------------------------------------------CCcccCCCc
Q 013335 77 ------------------------RSGP-------------------------------------------YGQVFRPDN 89 (445)
Q Consensus 77 ------------------------~~~~-------------------------------------------~~~~f~~~~ 89 (445)
+..+ .+..|||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~t 157 (483)
T KOG2530|consen 78 YQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRT 157 (483)
T ss_pred cchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccc
Confidence 0000 011233333
Q ss_pred eeeccCCCCCCCCCCccccchhh------HHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCce
Q 013335 90 FVFGQSGAGNNWAKGHYTEGAEL------IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (445)
Q Consensus 90 ~~~~~~~~gnnwa~G~~~~g~~~------~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~ 163 (445)
+..-+..--+.=|.+.|..|.++ .+++.|+||.++|+||.||||++..++.+||| |+++.++|.|+|||+++.
T Consensus 158 l~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 158 LNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKA 236 (483)
T ss_pred cccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCc
Confidence 22111000000013344555554 47889999999999999999999999999996 999999999999999999
Q ss_pred eeEEEEecCCCC-Ccccch------hhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccC
Q 013335 164 MLTFSVFPSPKV-SDTVVE------PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGV 236 (445)
Q Consensus 164 i~~~~v~P~~~~-~~~~~~------~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 236 (445)
+++++..|.+.. ++.... ..|.+|++++|.++|++++|+.--. .++ ......+++|.+++++
T Consensus 237 v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ds~ 305 (483)
T KOG2530|consen 237 VFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAFDSI 305 (483)
T ss_pred eeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhcccc
Confidence 999999985432 222222 5689999999999999999993211 111 2356789999999999
Q ss_pred cccccCCCCCccchhhhcc
Q 013335 237 TCCLRFPGQLNSDLRKLAV 255 (445)
Q Consensus 237 t~~~R~~~~~~~~l~~l~~ 255 (445)
|.|+|.-+..+..+.+.+.
T Consensus 306 tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 306 TLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred cccceecchhHHHHHHHHH
Confidence 9999998875555555443
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=9.2e-32 Score=270.10 Aligned_cols=219 Identities=22% Similarity=0.278 Sum_probs=187.2
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccC
Q 013335 1 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGP 80 (445)
Q Consensus 1 M~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~ 80 (445)
|| |..|.+|+||+.|-+++++.= +. ...+|+||+|+||+++..++++++
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~~-----------------------~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----KR-----------------------SGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----CC-----------------------cCCccceeEEEEECCHHHHHhhhc--
Confidence 55 788999999999999987521 00 123688999999999999887754
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCC--CCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 81 YGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 81 ~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~--lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
...++.++.|++.+....+.|.+..|++..++..|.||+++|.||. +|+|+|++|++||||||+++.+++.++++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~ 126 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKER 126 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHh
Confidence 3357778888754333333344566889999999999999999997 99999999999999999999999999999
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcc
Q 013335 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238 (445)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (445)
|| +.+++++++|+.. +..+++||+++++++|.+++|.++++||++|.+++.. + .+.|+.+|++||+.|+.++.
T Consensus 127 ~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~ 199 (349)
T cd02202 127 YE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLR 199 (349)
T ss_pred CC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHH
Confidence 99 8899999999843 4599999999999999999999999999999997632 2 37899999999999999999
Q ss_pred cccC-----CCCCccchhhhccccccc
Q 013335 239 CLRF-----PGQLNSDLRKLAVNLIPF 260 (445)
Q Consensus 239 ~~R~-----~~~~~~~l~~l~~~L~p~ 260 (445)
+.|| +|.+|.|+.|+.++|.+.
T Consensus 200 ~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 200 AGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred hhhcccCCCCCeEeccHHHHHHHhccC
Confidence 9999 999999999999999765
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=9.7e-27 Score=229.51 Aligned_cols=205 Identities=23% Similarity=0.303 Sum_probs=168.6
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCCc
Q 013335 4 ILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQ 83 (445)
Q Consensus 4 IItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (445)
|..|.+|+||+.+-+++++. ++ .-.+.+.||++...++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~----------------------------~~~~~iainTd~~~L~~~~a-~~ki 48 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK----------------------------EGRSAVAVNTDAQDLLGLEA-ENRV 48 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC----------------------------CCccEEEEECcHHHHhcCCC-CcEE
Confidence 77899999999999888651 10 01457899999887765542 1111
Q ss_pred ccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCce
Q 013335 84 VFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (445)
Q Consensus 84 ~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~ 163 (445)
++.++ .+...|+|+||.. |++..++++|+||+.+|.||. |+|++++|||||||+++.+++.+++.|+
T Consensus 49 ~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--- 115 (303)
T cd02191 49 LIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--- 115 (303)
T ss_pred ecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC---
Confidence 11111 1234589999865 468999999999999999994 8999999999999999999999999985
Q ss_pred eeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccccCC
Q 013335 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFP 243 (445)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R~~ 243 (445)
.+++|+|.|...|..+++||+++++++|.+++|+++++||++|.++|.+ +.+. ..|+.+|.+||+.++++|..+|+|
T Consensus 116 -~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~ 192 (303)
T cd02191 116 -LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIE 192 (303)
T ss_pred -CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccC
Confidence 5666666666778899999999999999999999999999999999976 6664 599999999999999999999999
Q ss_pred CCCccchhhhccccc
Q 013335 244 GQLNSDLRKLAVNLI 258 (445)
Q Consensus 244 ~~~~~~l~~l~~~L~ 258 (445)
|.+|.|++++.+.|-
T Consensus 193 g~invD~~dv~~~l~ 207 (303)
T cd02191 193 GEINVDFADVKNVMD 207 (303)
T ss_pred CcccCCHHHHHHHhc
Confidence 999999999987774
No 24
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.92 E-value=3.2e-25 Score=191.74 Aligned_cols=123 Identities=42% Similarity=0.862 Sum_probs=112.5
Q ss_pred CcccccccccccccccccccccccCHHHHHHccccccccccccCCCCCchhheeeccccCCChhHHHHHHHHhhcccccc
Q 013335 261 PRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY 340 (445)
Q Consensus 261 p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 340 (445)
||+||++++++|+........++.++.||++++|+++++|+++++.+|+|||+++++||++.++++.+.+.++|.+..++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988778899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceeeeccCCCCCCccc---eeeecCChhHHHHHHHHHH
Q 013335 341 FVEWIPNNVKSTVCDIPPTGLKMA---STFIGNSTSIQEMFRRVSE 383 (445)
Q Consensus 341 f~~w~p~~~~~~~~~~~~~~~~~s---~~~l~N~t~i~~~l~~l~~ 383 (445)
|++|+|+++|+++|.++|.....+ +++|+|+|+|.++|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999887776 9999999999999999864
No 25
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.92 E-value=5.8e-25 Score=220.24 Aligned_cols=201 Identities=21% Similarity=0.333 Sum_probs=162.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCCc
Q 013335 4 ILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQ 83 (445)
Q Consensus 4 IItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (445)
|..|.+|+||+.+-+++++.- + .-...+.+|++...++.+..
T Consensus 20 i~viGvGg~G~n~v~~l~~~~-----~----------------------------~~~~~iainTD~~~L~~~~a----- 61 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEEG-----V----------------------------EGVEFIAINTDAQHLKTTKA----- 61 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHcC-----C----------------------------CceEEEEEECCHHHHhcCCC-----
Confidence 778999999999998886521 0 01456888988766654432
Q ss_pred ccCCCceeec-----cCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 84 VFRPDNFVFG-----QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 84 ~f~~~~~~~~-----~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
++.+..| -.|+|++|+. |++..++.+|.||+.+|.||.+ +|++|+|||||||+++.+++.++ +
T Consensus 62 ---~~ki~iG~~~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e 129 (349)
T TIGR00065 62 ---DKKILIGKKLTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-E 129 (349)
T ss_pred ---CeEEEcCCCCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-H
Confidence 1223333 3478888764 6799999999999999999986 99999999999999996665555 5
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcc
Q 013335 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238 (445)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (445)
|+ +++++|+|.|...|..+++||+++++.+|.+++|+++++||++|.++|.+ +.+. ..|+.+|.+|++.+.++|.
T Consensus 130 ~~---~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~ 204 (349)
T TIGR00065 130 LG---ALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISE 204 (349)
T ss_pred cC---CCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHH
Confidence 64 44555555545678899999999999999999999999999999999976 7764 4899999999999999999
Q ss_pred cccCCCCCccchhhhcccccc
Q 013335 239 CLRFPGQLNSDLRKLAVNLIP 259 (445)
Q Consensus 239 ~~R~~~~~~~~l~~l~~~L~p 259 (445)
++|+||.+|.|+.++.+-|--
T Consensus 205 ~ir~~g~iNvDf~dv~~vl~~ 225 (349)
T TIGR00065 205 LITKPGLINIDFADVRAVMSG 225 (349)
T ss_pred hhccCCcCcCCHHHHHHHHhc
Confidence 999999999999999987743
No 26
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.91 E-value=3.1e-24 Score=212.50 Aligned_cols=209 Identities=17% Similarity=0.275 Sum_probs=164.5
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCCc
Q 013335 4 ILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQ 83 (445)
Q Consensus 4 IItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (445)
|..|.+|+||+.+-+++++. ++ . -...+.+|++...++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA-PNKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-CcEE
Confidence 67899999999999888651 10 0 1356889998877665542 1111
Q ss_pred ccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCce
Q 013335 84 VFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (445)
Q Consensus 84 ~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~ 163 (445)
++.++ .++-.|+|++|+.| ++..++.+|+||+.+|.||.+ +|++++|||||||+++.+++..+ +|+. .
T Consensus 49 ~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~-~ 116 (304)
T cd02201 49 QLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA-L 116 (304)
T ss_pred EcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC-C
Confidence 12111 13345888887755 578899999999999999985 99999999999999998766555 5753 4
Q ss_pred eeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccccCC
Q 013335 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFP 243 (445)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R~~ 243 (445)
.+++.+.| ...|..+++||+++++++|.+++|+++++||++|.++|.+.+.+.. .|+.+|.+|++++.++|.++|+|
T Consensus 117 ~~~vvt~P--f~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~ 193 (304)
T cd02201 117 TVAVVTKP--FSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKP 193 (304)
T ss_pred EEEEEeCC--ccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 44444445 4567789999999999999999999999999999999977677654 79999999999999999999999
Q ss_pred CCCccchhhhcccccccC
Q 013335 244 GQLNSDLRKLAVNLIPFP 261 (445)
Q Consensus 244 ~~~~~~l~~l~~~L~p~p 261 (445)
|.+|.|+.++.+.|-.-.
T Consensus 194 g~invD~~dv~~vl~~~G 211 (304)
T cd02201 194 GLINLDFADVKTVMKNKG 211 (304)
T ss_pred ccccCCHHHHHHHhccCC
Confidence 999999999998886543
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.89 E-value=5.2e-23 Score=206.98 Aligned_cols=200 Identities=22% Similarity=0.377 Sum_probs=163.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCCc
Q 013335 4 ILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQ 83 (445)
Q Consensus 4 IItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~~ 83 (445)
|..|.+|+||+.+-+++++. ++ . -...+.|+++...++.+..
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~---~v~~iaiNTD~q~L~~~~a----- 72 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-------------------------E---GAETIAINTDAQHLAMIKA----- 72 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-----
Confidence 77899999999999888741 10 0 0345889998876654432
Q ss_pred ccCCCceeec-----cCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 84 VFRPDNFVFG-----QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 84 ~f~~~~~~~~-----~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
+..+..| ..|+|++|.. |++..++.+|.||+.+|.||. |+|++++|||||||+++.+++.+++
T Consensus 73 ---~~ki~iG~~~t~G~GaG~dp~~-----G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake- 140 (378)
T PRK13018 73 ---DKKILIGKSLTRGLGAGGDPEV-----GRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE- 140 (378)
T ss_pred ---CcEEecCCccCCCCCCCCChHH-----HHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-
Confidence 1223333 3577777554 557888999999999999997 8999999999999999999999987
Q ss_pred cCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcc
Q 013335 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 238 (445)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (445)
++ ...+++++.|+ ..+...+..|+.+++.+|.+++|+++++||++|.++| +.+.+. ..|+.+|.+|++++.++|.
T Consensus 141 ~g-~ltv~vVt~Pf--~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~ 215 (378)
T PRK13018 141 QG-ALVVGVVTKPF--KFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITE 215 (378)
T ss_pred cC-CCeEEEEEcCc--ccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhh
Confidence 54 45667778887 4566788999999999999999999999999999999 666665 4799999999999999999
Q ss_pred cccCCCCCccchhhhccccc
Q 013335 239 CLRFPGQLNSDLRKLAVNLI 258 (445)
Q Consensus 239 ~~R~~~~~~~~l~~l~~~L~ 258 (445)
++|+||.+|.|+.++.+-|-
T Consensus 216 ~i~~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 216 TITKPSLINLDFADVKSVMK 235 (378)
T ss_pred hcccCCceecCHHHHHHHhc
Confidence 99999999999999988774
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=4.8e-22 Score=181.38 Aligned_cols=149 Identities=23% Similarity=0.371 Sum_probs=108.7
Q ss_pred CcccCCCceeeccCCCCCC--CCCCccccchhhH------HHHHHH-HHHHHhhcCCCCceeEeecCCCCccccchHHHH
Q 013335 82 GQVFRPDNFVFGQSGAGNN--WAKGHYTEGAELI------DSVLDV-VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (445)
Q Consensus 82 ~~~f~~~~~~~~~~~~gnn--wa~G~~~~g~~~~------e~~~d~-ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~ll 152 (445)
+-.|||+++..-++-.-++ -...-|..|.+.+ +++.|+ ||+++|+||.|||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 3456666665433211111 1222344444443 455665 9999999999999999999999996 9999999
Q ss_pred HHHHhhcCCcee-eEEEEecCCCCCc-----ccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchh
Q 013335 153 SKIREEYPDRMM-LTFSVFPSPKVSD-----TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLN 226 (445)
Q Consensus 153 e~l~deyp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N 226 (445)
|+|||||||+.+ +.+++.+...... ...+..|.++++.+|.++|++++|+.... ...+..+..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 6666655422211 22456899999999999999999996210 224556899
Q ss_pred HHHHHHhccCcccccC
Q 013335 227 HLISATMSGVTCCLRF 242 (445)
Q Consensus 227 ~~ia~~i~~~t~~~R~ 242 (445)
+++|.+|+++|.|+|+
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999995
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.85 E-value=2.8e-21 Score=194.67 Aligned_cols=203 Identities=21% Similarity=0.329 Sum_probs=164.7
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCCCCccceeEEecCCCCccccccccCCC
Q 013335 3 EILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYG 82 (445)
Q Consensus 3 EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~i~~~~~~ 82 (445)
.|-.|.+|.||+.+=+++++. ++. -...+.++++...++.+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~~----------------------------~v~fia~NTD~q~L~~~~a~--- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GIQ----------------------------GVEFIAANTDAQALLKSKAP--- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CCC----------------------------CceEEEEeCcHHHHhcCCCC---
Confidence 477899999999999887652 110 01347888887765544321
Q ss_pred cccCCCceeec-----cCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHh
Q 013335 83 QVFRPDNFVFG-----QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157 (445)
Q Consensus 83 ~~f~~~~~~~~-----~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~d 157 (445)
.-+..| ..|+|++|. .|++..++.++.||+.+|.||.+ +|++++|||||||.++ ++..+..
T Consensus 59 -----~ki~lG~~~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iak 124 (384)
T PRK09330 59 -----VKIQLGEKLTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAK 124 (384)
T ss_pred -----eEEEcCCcccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHH
Confidence 122333 347777765 67799999999999999999987 9999999999999999 5656666
Q ss_pred hcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCc
Q 013335 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 237 (445)
Q Consensus 158 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (445)
+|+ +++++|+|.|...|..+++||+.++|..|.+++|.+++++|++|.+++.+.+.+. ..|+.+|.+|++.+.+++
T Consensus 125 e~g---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~-~Af~~ad~vL~~~v~~It 200 (384)
T PRK09330 125 ELG---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLL-DAFKAADDVLRQAVQGIT 200 (384)
T ss_pred HcC---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 775 6677777776788999999999999999999999999999999999987666654 389999999999999999
Q ss_pred ccccCCCCCccchhhhcccccc
Q 013335 238 CCLRFPGQLNSDLRKLAVNLIP 259 (445)
Q Consensus 238 ~~~R~~~~~~~~l~~l~~~L~p 259 (445)
..+++||..|.|+.++.+-|.-
T Consensus 201 ~~i~~pG~iNvDfaDvk~vm~~ 222 (384)
T PRK09330 201 DLITKPGLINLDFADVKTVMSE 222 (384)
T ss_pred HHHhcCCcccCCHHHHHHHHhc
Confidence 9999999999999999887753
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.48 E-value=2.5e-14 Score=121.41 Aligned_cols=66 Identities=32% Similarity=0.555 Sum_probs=51.8
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhhCCCCCCCCCCCccccccccccccccCCC----CCccceeEEecCCCCcc
Q 013335 2 REILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASC----GRYVPRAVLMDLEPGTM 73 (445)
Q Consensus 2 ~EIItiq~Gq~GnqiG~~~w~~~~~E~~i~~~~~~~~~~~~~~~~~~~~F~e~~~----~~~~pR~llvD~e~~~i 73 (445)
|||||||+|+.+|+||+||||+| |..+ .+.++.+....+++++||++.+ .+|+||+|++|++.+.-
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~----~y~~~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lG 70 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYL----PYDPDEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLG 70 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hccc----ccCccccCcccCCceEEecccCcCCCeeECCcEEEEecCCCcC
Confidence 79999999999999999999988 7544 2322222134578999999743 58999999999999853
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.30 E-value=1.3e-11 Score=122.27 Aligned_cols=149 Identities=17% Similarity=0.270 Sum_probs=125.9
Q ss_pred ccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhH
Q 013335 105 HYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYN 184 (445)
Q Consensus 105 ~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN 184 (445)
.+..|++..++..+.|+..++..| -+.++.++|||||+|.++.+++.+++ .....+.++++|+. .|...+.-|
T Consensus 74 ~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~~~ 146 (338)
T COG0206 74 NPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRMEN 146 (338)
T ss_pred CcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHHHH
Confidence 388899999999999999998777 56889999999999999999999988 46777888889973 455566679
Q ss_pred HHHHHHHHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccccCCCCCccchhhhcccccccCc
Q 013335 185 ATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPR 262 (445)
Q Consensus 185 ~~lsl~~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~R~~~~~~~~l~~l~~~L~p~p~ 262 (445)
+.-++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+..++..+--||..|.|+.++.+-+.....
T Consensus 147 A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G~ 222 (338)
T COG0206 147 AEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGF 222 (338)
T ss_pred HHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCCc
Confidence 9999999999999999999999988653 2222 23677789999999999999999999999999999988776443
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.56 E-value=2.8e-08 Score=84.29 Aligned_cols=114 Identities=25% Similarity=0.434 Sum_probs=86.6
Q ss_pred CccchhhhcccccccCcccccccccccccccccccccccCHHHHHH--ccccccccccccCCCCCchhheeeccccCCCh
Q 013335 246 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQ--QMWDAKNMMCAADPRHGRYLTASAMFRGKMST 323 (445)
Q Consensus 246 ~~~~l~~l~~~L~p~p~~~~l~~s~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 323 (445)
+|.|+.++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4689999999999999 889999999752 34456677777 7888877776655442 666654 6778
Q ss_pred hHHHHHHHHhhcccc-cceeeecC-CCceeeeccCCCCCCccceeeecC-ChhHHHHHHHHH
Q 013335 324 KEVDEQMINVQNKNS-SYFVEWIP-NNVKSTVCDIPPTGLKMASTFIGN-STSIQEMFRRVS 382 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~l~ 382 (445)
.++.+.+..++.+.. ..|+.|+| ..++++ .+.+.++| +|+|..+|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~----------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG----------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC----------CCcEEEEEEecccCccccccC
Confidence 899998888877655 78999998 443321 45688999 999999988763
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.18 E-value=0.008 Score=60.93 Aligned_cols=103 Identities=23% Similarity=0.173 Sum_probs=61.0
Q ss_pred ccCCCCCCCCCCccc---cchhhHHHHHHHHHHHHhh-----c-CCCCceeEeecCCCCccccchHHHHHHHHhhc----
Q 013335 93 GQSGAGNNWAKGHYT---EGAELIDSVLDVVRKEAEN-----C-DCLQGFQVCHSLGGGTGSGMGTLLISKIREEY---- 159 (445)
Q Consensus 93 ~~~~~gnnwa~G~~~---~g~~~~e~~~d~ir~~~E~-----c-D~lqgf~i~~s~~GGtGSG~gs~lle~l~dey---- 159 (445)
...|+|..-+.|... .-+++.+.+.+.++...++ . +.-=-+.|++|++||||||+---++-.||+.+
T Consensus 101 ~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~ 180 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQPG 180 (345)
T ss_pred hhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhccc
Confidence 446777777766432 2233334444444421111 1 00012578999999999999999999999976
Q ss_pred -CCceeeEEEEecCCCCCc---ccchhhHHHHHHHHHhhc
Q 013335 160 -PDRMMLTFSVFPSPKVSD---TVVEPYNATLSVHQLVEN 195 (445)
Q Consensus 160 -p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~L~e~ 195 (445)
....+..+.+.|....+. .....-|+.=+|.+|.-+
T Consensus 181 ~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 181 QDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred CCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 345688888999732221 133344776666666543
No 34
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=68.65 E-value=5.1 Score=34.37 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhh
Q 013335 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (445)
Q Consensus 113 ~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~de 158 (445)
.+...++|+..+++++. +|..|+.++ |||-.- ....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n-~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAEMN-AEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChHHH-HHHHHHhcCCC
Confidence 45567889999999999 999999999 776311 22345555444
No 35
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=68.28 E-value=16 Score=30.58 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCCceeEeecCCCCcc
Q 013335 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (445)
Q Consensus 111 ~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtG 144 (445)
+-.+++.+++++.+++.+.-+|+.|+.++.|||-
T Consensus 38 ~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 38 ESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp SCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 3456778888999999899999999999999874
No 36
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=66.28 E-value=19 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEeecCCCCcc
Q 013335 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (445)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtG 144 (445)
-.+++.+++++.+++.+.-+|+.|+.++-|||-
T Consensus 39 ~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 39 SPDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 346677888888888888889999999999874
No 37
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=65.70 E-value=6.6 Score=33.76 Aligned_cols=29 Identities=28% Similarity=0.737 Sum_probs=23.4
Q ss_pred CCccccchHHHHHHHHhhcCC-ceeeEEEE
Q 013335 141 GGTGSGMGTLLISKIREEYPD-RMMLTFSV 169 (445)
Q Consensus 141 GGtGSG~gs~lle~l~deyp~-~~i~~~~v 169 (445)
+|-|.|+|..+++.||.++|. ..+++...
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 466779999999999999998 66665543
No 38
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=62.88 E-value=27 Score=31.92 Aligned_cols=109 Identities=15% Similarity=0.235 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCcee-EeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHH
Q 013335 112 LIDSVLDVVRKEAENCDCLQGFQ-VCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190 (445)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~-i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 190 (445)
+...+.+.|+..+|+ |+. ++.+.+-|+. -.+..++-.|+.+||...+ .+++|+...+..--+ ..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~~--~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWNE--ANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS-H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCCH--HHHHHHH
Confidence 334455667777764 433 4444444443 3456667778999997444 678898544432222 2344567
Q ss_pred HHhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCccc
Q 013335 191 QLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 239 (445)
Q Consensus 191 ~L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (445)
.|.+.||-++.+........ ..|..-|+-+...-+.+.+-
T Consensus 97 ~il~~aD~v~~vs~~~Y~~~---------~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYSP---------GQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHHHH-SEEEESSSSB---H---------HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEccCCCCCCH---------HHHHHHhHHHHhCCCeEEEE
Confidence 77888898888855422211 12345566555555544443
No 39
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=61.96 E-value=26 Score=29.44 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEeecCCCCcc
Q 013335 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (445)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtG 144 (445)
-.+++.+++++.+++.+.=+|+.|+.++-|||-
T Consensus 40 ~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 40 NAETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 356778888888888877789999999999985
No 40
>PLN02847 triacylglycerol lipase
Probab=59.80 E-value=9.5 Score=41.21 Aligned_cols=62 Identities=27% Similarity=0.332 Sum_probs=42.9
Q ss_pred CCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHh--hcCCceeeEEE
Q 013335 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE--EYPDRMMLTFS 168 (445)
Q Consensus 103 ~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~d--eyp~~~i~~~~ 168 (445)
+|++...+.+.+.+...|++.++++...+=+.+=||+|||+ ++.+.-.|+. +|++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 45555556677777888889999998887788889998876 3444445554 45665555554
No 41
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=52.60 E-value=42 Score=33.89 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=58.7
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCC-cccchhhHHH
Q 013335 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNAT 186 (445)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (445)
...+.+.++.+.|+... +..+||.|+|+.+ | ---++.+++.+-...+|-.+++=+-.|....+ |.....++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45677788888888766 4688999999775 4 25567777776555567677777788875444 4444444444
Q ss_pred HHHHHHhhcCCcceeecchhhhh
Q 013335 187 LSVHQLVENADECMVLDNEALYD 209 (445)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~~l~~ 209 (445)
. +..-....-..+.| |+.++.
T Consensus 137 ~-~A~~~~~~GV~V~f-~~~i~~ 157 (335)
T PRK09461 137 Y-VAANYPINEVTLFF-NNKLFR 157 (335)
T ss_pred H-HHcCCCCCeEEEEE-CCEeec
Confidence 3 43322233444555 444543
No 42
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=47.09 E-value=18 Score=33.87 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=47.2
Q ss_pred CCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcc
Q 013335 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178 (445)
Q Consensus 101 wa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~ 178 (445)
.-+|++.....+.+.+...++...+++...+=+..=||+||+. ++.+.-.|+..++...+..+ .+-.+..++.
T Consensus 99 vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGai----A~l~a~~l~~~~~~~~i~~~-tFg~P~vg~~ 171 (229)
T cd00519 99 VHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGAL----ASLLALDLRLRGPGSDVTVY-TFGQPRVGNA 171 (229)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHH----HHHHHHHHHhhCCCCceEEE-EeCCCCCCCH
Confidence 4567776667777888888888888877777778888997664 56666666666533333322 3333344543
No 43
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=44.62 E-value=36 Score=29.58 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=41.1
Q ss_pred CCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEE
Q 013335 103 KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSV 169 (445)
Q Consensus 103 ~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v 169 (445)
+|++...+.+...+...+++...++..-+-+.+=||+||+. +..+...++...+.+.+-.++.
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~~~~~~~~~~f 63 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRGLGRLVRVYTF 63 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhccCCCceEEEEe
Confidence 36666667777788888888777777777788889998765 4555555655533333333333
No 44
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=43.50 E-value=70 Score=32.07 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=58.6
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHH
Q 013335 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187 (445)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (445)
...+.+..+.+.|++.+++ .+||.|+|..+ | --.++..+..+-+. +|-.+++=+..|....+....+....++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567778888888887763 78999999765 4 24456666655554 7777777778887554444444444444
Q ss_pred HHHHHhh--cCCcceeecchhhhh
Q 013335 188 SVHQLVE--NADECMVLDNEALYD 209 (445)
Q Consensus 188 sl~~L~e--~sd~~i~~dN~~l~~ 209 (445)
.+....+ .....+.|++. ++.
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~-i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDR-IFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEECCE-Eec
Confidence 4443332 34566667554 443
No 45
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=40.93 E-value=80 Score=31.46 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=53.1
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCC-CCcccchhhHHH
Q 013335 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (445)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (445)
...+.+.++.+.|++.+++ .+||.|+|..+ | --.++.++..+-+..+|-.+++=+..|... .+|.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 4567777888888888754 89999999765 3 234555666665555676777778888654 344555555555
Q ss_pred HHHHHHhhcCCcceeecchhhhh
Q 013335 187 LSVHQLVENADECMVLDNEALYD 209 (445)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~~l~~ 209 (445)
....+-. ..-..++|++. ++.
T Consensus 128 ~~A~~~~-~~GV~v~f~~~-i~~ 148 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGR-IYA 148 (313)
T ss_dssp HHHHSGG-TSSEEEEETTE-EEE
T ss_pred HHHhccc-CCceEEEeCCC-ccc
Confidence 4444433 44455555444 543
No 46
>PRK13660 hypothetical protein; Provisional
Probab=40.84 E-value=1.3e+02 Score=27.57 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHH
Q 013335 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 191 (445)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 191 (445)
+...+.+.|+..+|+ .+.= ++.+..=|+- =.++-++-.|+.+||...+ ..++|+...++.--+ ..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~w--fi~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e--~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEW--VIISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNE--ANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCE--EEECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCH--HHHHHHHH
Confidence 334455666666663 2332 2222222221 2355677789999997544 557787544432111 22234456
Q ss_pred HhhcCCcceeecchhhhhhhhcccCCCCCCccchhHHHHHHhccCcccc
Q 013335 192 LVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCL 240 (445)
Q Consensus 192 L~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (445)
+.+.||-++.+...-- . ....|..-|+-+...-+.+.+-+
T Consensus 98 i~~~aD~v~~vs~~~y--------~-~p~q~~~rn~fmv~~sd~~i~~Y 137 (182)
T PRK13660 98 ILKQADFVKSISKRPY--------E-SPAQFRQYNQFMLEHTDGALLVY 137 (182)
T ss_pred HHHhCCEEEEecCCCC--------C-ChHHHHHHHHHHHHccCeEEEEE
Confidence 6778999888843210 0 01235666776666555555433
No 47
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=38.11 E-value=33 Score=29.44 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhcCC-CCceeEeecCCCCccccchH-HHHHHHHh
Q 013335 113 IDSVLDVVRKEAENCDC-LQGFQVCHSLGGGTGSGMGT-LLISKIRE 157 (445)
Q Consensus 113 ~e~~~d~ir~~~E~cD~-lqgf~i~~s~~GGtGSG~gs-~lle~l~d 157 (445)
.+.+.++|++.+|+++. =+|+.|+.++ ||+ =+.. ..++.+..
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~ 84 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED 84 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc
Confidence 44566788889999866 8999999999 765 2322 35555543
No 48
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=34.37 E-value=1.3e+02 Score=31.29 Aligned_cols=91 Identities=20% Similarity=0.177 Sum_probs=59.6
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCC-CCcccchhhHHH
Q 013335 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (445)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (445)
...+.|..+.+.|+..++ +..+||.|+|+.+ | --.++..+..+-+..||-.+++=+-.|... .+|.....++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 456677788888888776 4568999999765 4 255666666655545676777777888754 345555555555
Q ss_pred HHHHHHhhcCCcceeecch
Q 013335 187 LSVHQLVENADECMVLDNE 205 (445)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~ 205 (445)
..-.+ ..+-..++|+++
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 44332 455667777664
No 49
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=34.15 E-value=11 Score=32.15 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=35.8
Q ss_pred CCccccch-hhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCC
Q 013335 103 KGHYTEGA-ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (445)
Q Consensus 103 ~G~~~~g~-~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~ 161 (445)
.|++..-. ...+.+.+.|+..+++.....=...=||+||+ ++..+.-.+....+.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 45544444 66778888888888876654445566788765 556666666665544
No 50
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=32.59 E-value=1.3e+02 Score=30.17 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=56.5
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCC-CcccchhhHHH
Q 013335 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV-SDTVVEPYNAT 186 (445)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~-~~~~~~~yN~~ 186 (445)
...+.+..+.+.|+..+.. +..+||.|+|..+ | --.++.++..+-+..+|-.+++=+-.|.... +|.....++++
T Consensus 57 ~t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 57 MTPADWLKLAKRINEALAD-DGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 4456666777777665443 5789999999765 4 2456666666555556767777778887543 34444444444
Q ss_pred HHHHHHhh--cCCcceeecchhhhh
Q 013335 187 LSVHQLVE--NADECMVLDNEALYD 209 (445)
Q Consensus 187 lsl~~L~e--~sd~~i~~dN~~l~~ 209 (445)
. +..-.+ ..-..++| |+.++.
T Consensus 133 ~-~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 133 R-VAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred H-HHcCcccCCCEEEEEE-CCEeee
Confidence 3 332222 23445555 555544
No 51
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=32.45 E-value=45 Score=31.53 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.4
Q ss_pred EeecCCCCccccchHHHHHHHHhhcCCc
Q 013335 135 VCHSLGGGTGSGMGTLLISKIREEYPDR 162 (445)
Q Consensus 135 i~~s~~GGtGSG~gs~lle~l~deyp~~ 162 (445)
++-+++||.|||=++ +++.|.+.++..
T Consensus 9 iiIgIaG~SgSGKTT-va~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTT-VAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHH-HHHHHHHHhCcC
Confidence 567899999999854 888999999855
No 52
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=32.02 E-value=1.1e+02 Score=30.86 Aligned_cols=94 Identities=19% Similarity=0.152 Sum_probs=57.8
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCC-cccchhhHHH
Q 013335 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNAT 186 (445)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (445)
...+.+..+.+.|+...+. .+||.|+|..+ | =-.++..+..+-+. +|-.++|=+-.|....+ |.....++++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567788888888887763 78999999776 4 24566666655444 77777777788875433 4444444444
Q ss_pred HHHHHHhhc-----CCcceeecchhhhh
Q 013335 187 LSVHQLVEN-----ADECMVLDNEALYD 209 (445)
Q Consensus 187 lsl~~L~e~-----sd~~i~~dN~~l~~ 209 (445)
. +....+. -..++++=|+.+++
T Consensus 132 ~-~A~~~~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 132 R-AATEYIAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred H-HHcCccccccccCceeEEEccCeEee
Confidence 3 4433331 12444444555554
No 53
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=31.77 E-value=1.7e+02 Score=22.60 Aligned_cols=53 Identities=13% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhc--CCCCceeEeecCC----CCccccchHHHHHHHHhhcCCceeeEEEE
Q 013335 114 DSVLDVVRKEAENC--DCLQGFQVCHSLG----GGTGSGMGTLLISKIREEYPDRMMLTFSV 169 (445)
Q Consensus 114 e~~~d~ir~~~E~c--D~lqgf~i~~s~~----GGtGSG~gs~lle~l~deyp~~~i~~~~v 169 (445)
++..+.++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 45556666666665 4568889999998 554 78888888877565555655543
No 54
>PF03283 PAE: Pectinacetylesterase
Probab=31.74 E-value=67 Score=32.82 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=34.4
Q ss_pred ccccchhhHHHHHHHHHHH-HhhcCCCCceeEeecCCCCccccchHHH-HHHHHhhcCC
Q 013335 105 HYTEGAELIDSVLDVVRKE-AENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPD 161 (445)
Q Consensus 105 ~~~~g~~~~e~~~d~ir~~-~E~cD~lqgf~i~~s~~GGtGSG~gs~l-le~l~deyp~ 161 (445)
.|-.|..+.+.+++.|... +.+. +-+.+..+.+||+| +.+ ++.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a---~~vlltG~SAGG~g----~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNA---KQVLLTGCSAGGLG----AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCccc---ceEEEeccChHHHH----HHHHHHHHHHHhcc
Confidence 3446777778877776665 4443 44577777777765 443 7899999995
No 55
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=31.68 E-value=50 Score=33.32 Aligned_cols=41 Identities=29% Similarity=0.521 Sum_probs=29.3
Q ss_pred HHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEE
Q 013335 122 KEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTF 167 (445)
Q Consensus 122 ~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~ 167 (445)
+.++.+..+.|+.+..++|||+| ..+=..++ .||+...+++
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 34677777888999999998875 43444455 9998766554
No 56
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=30.60 E-value=1.2e+02 Score=30.51 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHhhcCCCCceeEeecCCCCcc
Q 013335 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (445)
Q Consensus 111 ~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtG 144 (445)
+-.+++.++++..+++.+.=+|+.|+.++-|||-
T Consensus 40 ~~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 40 ENAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 3456777888888888877789999999999985
No 57
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=30.60 E-value=1.3e+02 Score=26.49 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=39.6
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceee
Q 013335 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMML 165 (445)
Q Consensus 99 nnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~ 165 (445)
|-++..++ .+...-+.+.+.+...++.-|+=+|+.|+.++-|||-+-.++++ ..+.|...++
T Consensus 29 nv~~v~~~-~~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l----~~~~~~~~vi 90 (143)
T COG2893 29 NVEAVDFV-PGEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRL----AMEGPRVEVI 90 (143)
T ss_pred ceEEEEee-cCCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHH----HhhCCCceEE
Confidence 33444443 33344455566666677777777999999999999875555444 4566665443
No 58
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=26.89 E-value=3.5e+02 Score=24.81 Aligned_cols=82 Identities=16% Similarity=0.288 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHH--HHHHHHhhcCCceeeEEEEecCCCCCcccchhhHHH
Q 013335 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTL--LISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNAT 186 (445)
Q Consensus 109 g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~--lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ 186 (445)
..++...+...+++....=..+.|++|=++.. | |.+..+ +++.||...|.-..+++.-+|.=..+..
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~--t-~~L~~Y~~fL~~LR~~LP~~~~LSIT~L~dW~~~~~-------- 90 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAA--T-SRLPAYAQFLQQLRQRLPPDYRLSITALPDWLSSPD-------- 90 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCcc--c-cchHHHHHHHHHHHHhCCCCceEeeEEehhhhcCch--------
Confidence 46677778888877777778999999999885 4 566544 7899999999878888888775211111
Q ss_pred HHHHHHhhcCCcceee
Q 013335 187 LSVHQLVENADECMVL 202 (445)
Q Consensus 187 lsl~~L~e~sd~~i~~ 202 (445)
.+..|....|-+++-
T Consensus 91 -~L~~L~~~VDE~VlQ 105 (181)
T PF11340_consen 91 -WLNALPGVVDELVLQ 105 (181)
T ss_pred -hhhhHhhcCCeeEEE
Confidence 566777778877765
No 59
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=26.69 E-value=1.9e+02 Score=30.16 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=59.4
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCC-CCcccchhhHHH
Q 013335 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNAT 186 (445)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~ 186 (445)
...+.|..+.+.|++.++. ..+||.|+|+.+ | =-.++..+..+- ..||-.+++=+-.|... .+|.....++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--T-M~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--T-MHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--h-HHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4567778888888888864 589999999776 5 245666666544 45676777777888654 345555555555
Q ss_pred HHHHHHhhcCCcceeecch
Q 013335 187 LSVHQLVENADECMVLDNE 205 (445)
Q Consensus 187 lsl~~L~e~sd~~i~~dN~ 205 (445)
..-. ...+...++|+++
T Consensus 207 ~~A~--~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LAAT--SDIAEVVVVMHGT 223 (419)
T ss_pred HHHh--CCCCcEEEEECCc
Confidence 4433 3455667777654
No 60
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=26.53 E-value=1.1e+02 Score=31.14 Aligned_cols=100 Identities=24% Similarity=0.367 Sum_probs=69.7
Q ss_pred ceeeccCCCCCCCC--CCccccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeE
Q 013335 89 NFVFGQSGAGNNWA--KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLT 166 (445)
Q Consensus 89 ~~~~~~~~~gnnwa--~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~ 166 (445)
|-++|+.|+..-|. .| .-.++.+++...|+.+.|.-..--|..+..-.++|-+.|+|..|+-.+.-++
T Consensus 196 nPL~G~~GAs~vFGPQKG---at~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l------- 265 (378)
T COG1929 196 NPLCGPQGASAVFGPQKG---ATPEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL------- 265 (378)
T ss_pred CCCcCCCCceeeecCccC---CCHHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc-------
Confidence 33456666655542 23 2357788888999999998888778888888888888899999987765432
Q ss_pred EEEecCCCCCcccchhhHHHHHHHHHhhcCCccee----ecchhhh
Q 013335 167 FSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV----LDNEALY 208 (445)
Q Consensus 167 ~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~----~dN~~l~ 208 (445)
.|. .+..=.++.|....+-+|+||. +|++++.
T Consensus 266 ---~~G-------i~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 266 ---KSG-------IEIVLEATNLEDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred ---ccc-------HHHHHHHhCHHHhhccCCEEEeCCCcccccccC
Confidence 121 2233446678888888999986 4666654
No 61
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=26.33 E-value=2.6e+02 Score=27.79 Aligned_cols=83 Identities=20% Similarity=0.333 Sum_probs=50.6
Q ss_pred ccceeEEecCCCCccccccccCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHHhhcCCCCceeEeec
Q 013335 59 YVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHS 138 (445)
Q Consensus 59 ~~pR~llvD~e~~~i~~i~~~~~~~~f~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s 138 (445)
-..|+|+||-+... +.....+.-|-|..|. ....+.+.|.||+..|+- .++---.+.+
T Consensus 13 T~s~~Vivd~~~~~-----------------~~~a~~~~Tnh~~ig~----~~~~~rie~~i~~A~~k~-g~d~~~~lr~ 70 (336)
T KOG1794|consen 13 TCSRLVIVDEDGTI-----------------LGRAVGGGTNHWLIGS----TTCASRIEDMIREAKEKA-GWDKKGPLRS 70 (336)
T ss_pred ceeEEEEECCCCCE-----------------eeEeeccccccccCCc----hHHHHHHHHHHHHHHhhc-CCCccCccce
Confidence 35799999933321 1111235567777773 467788899999988874 2322233334
Q ss_pred CCCCc----cccchHHHHHHHHhhcCCce
Q 013335 139 LGGGT----GSGMGTLLISKIREEYPDRM 163 (445)
Q Consensus 139 ~~GGt----GSG~gs~lle~l~deyp~~~ 163 (445)
++=|. =--..-.|.+.+||.||...
T Consensus 71 lgL~lSg~d~e~~~~~lv~~~R~~fps~a 99 (336)
T KOG1794|consen 71 LGLGLSGTDQEDKNRKLVTEFRDKFPSVA 99 (336)
T ss_pred eeeecccCCchhHHHHHHHHHHHhccchh
Confidence 43332 11235678999999998765
No 62
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=26.16 E-value=90 Score=30.50 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCCCCCCccccchhhHHHHH-HHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEE
Q 013335 98 GNNWAKGHYTEGAELIDSVL-DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSV 169 (445)
Q Consensus 98 gnnwa~G~~~~g~~~~e~~~-d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v 169 (445)
.-.++-|||..+.+-.++.+ .++...+|+++ ++.=+=+-++|.|+| |+. ..+...| +..+..+.+
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~-l~~G~~vLDiGcGwG-~~~----~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLG-LKPGDRVLDIGCGWG-GLA----IYAAERY-GCHVTGITL 93 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT---TT-EEEEES-TTS-HHH----HHHHHHH---EEEEEES
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhC-CCCCCEEEEeCCCcc-HHH----HHHHHHc-CcEEEEEEC
Confidence 34577788887777666655 46778888886 444456678877776 443 3455566 455555544
No 63
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=25.99 E-value=40 Score=30.41 Aligned_cols=48 Identities=13% Similarity=0.350 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHh--cccccccccccCCCCChhcHHHHHHHHHHHHHHHHHH
Q 013335 372 TSIQEMFRRVSEQFTAM--FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425 (445)
Q Consensus 372 t~i~~~l~~l~~~~~~m--~~krAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (445)
.-|...+.+|.+-+..- |..-.||+||++|+.||+. .+.+|++.++-+
T Consensus 95 q~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~a 144 (167)
T COG1528 95 QKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELA 144 (167)
T ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHc
Confidence 34445555555444433 4677899999999987643 444566666554
No 64
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=25.01 E-value=32 Score=16.57 Aligned_cols=8 Identities=75% Similarity=1.427 Sum_probs=5.7
Q ss_pred ccccccCc
Q 013335 255 VNLIPFPR 262 (445)
Q Consensus 255 ~~L~p~p~ 262 (445)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 35788887
No 65
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=23.82 E-value=89 Score=23.47 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=19.1
Q ss_pred cccchHHHHHHHHhhcCCceeeE
Q 013335 144 GSGMGTLLISKIREEYPDRMMLT 166 (445)
Q Consensus 144 GSG~gs~lle~l~deyp~~~i~~ 166 (445)
|-|+|+.|+..+.+.++++.+..
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEEE
Confidence 45899999999999998777653
No 66
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=23.41 E-value=1.3e+02 Score=29.56 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=42.2
Q ss_pred ccCCCCCCCCCCc-cccchhhHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEec
Q 013335 93 GQSGAGNNWAKGH-YTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171 (445)
Q Consensus 93 ~~~~~gnnwa~G~-~~~g~~~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P 171 (445)
|++.-+.....|| |-.=+++.|.+.+.+..+ .+.-+. |.|.|.|+.++-+..-.||+...--+-|-|
T Consensus 65 Gqe~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f-----~lk~vI-------g~GvGAGAnIL~rfAl~~p~~V~GLiLvn~ 132 (283)
T PF03096_consen 65 GQEEGAATLPEGYQYPSMDQLAEMLPEVLDHF-----GLKSVI-------GFGVGAGANILARFALKHPERVLGLILVNP 132 (283)
T ss_dssp TTSTT-----TT-----HHHHHCTHHHHHHHH-----T---EE-------EEEETHHHHHHHHHHHHSGGGEEEEEEES-
T ss_pred CCCCCcccccccccccCHHHHHHHHHHHHHhC-----CccEEE-------EEeeccchhhhhhccccCccceeEEEEEec
Confidence 6677777788884 222346666666666665 111111 578999999999999999998766666666
Q ss_pred CCCCCcccchhh
Q 013335 172 SPKVSDTVVEPY 183 (445)
Q Consensus 172 ~~~~~~~~~~~y 183 (445)
. .....-.+..
T Consensus 133 ~-~~~~gw~Ew~ 143 (283)
T PF03096_consen 133 T-CTAAGWMEWF 143 (283)
T ss_dssp ---S---HHHHH
T ss_pred C-CCCccHHHHH
Confidence 5 3334444444
No 67
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=22.28 E-value=5e+02 Score=27.23 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCC---CCcccchhhHHHHH
Q 013335 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPK---VSDTVVEPYNATLS 188 (445)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~---~~~~~~~~yN~~ls 188 (445)
..+.-.+.|...+. .+.++++-|..+...|+|+++.+.|++.|+.-=-...+++.--.|... ....+..+.|--..
T Consensus 151 ~~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 33444455544442 134689999999999999999988865555421111222222222211 11122323333322
Q ss_pred HHHH-hhcCCcceeecchh
Q 013335 189 VHQL-VENADECMVLDNEA 206 (445)
Q Consensus 189 l~~L-~e~sd~~i~~dN~~ 206 (445)
.... ...+|+.+.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 2222 23489999998774
No 68
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=22.14 E-value=3.1e+02 Score=28.85 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCC---CCCcccchhhHHHHH
Q 013335 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP---KVSDTVVEPYNATLS 188 (445)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~---~~~~~~~~~yN~~ls 188 (445)
..+...+.|...+..-..+.++.|..+.+.|+|+.+.+.+++.|- ..++..-..|.. .....+..+.+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 344445555555443346788999999999998777777776643 344444334421 122344444444333
Q ss_pred HHHHhhcCCcceeecchh
Q 013335 189 VHQLVENADECMVLDNEA 206 (445)
Q Consensus 189 l~~L~e~sd~~i~~dN~~ 206 (445)
..-....+|+.+-+|.|+
T Consensus 233 ~~v~~~~aDlgia~DgDa 250 (464)
T COG1109 233 KAVKEHGADLGIAFDGDA 250 (464)
T ss_pred HHHHhcCCCEEEEecCCC
Confidence 322233699999998885
No 69
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=21.74 E-value=2.1e+02 Score=22.85 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=41.0
Q ss_pred ceeeecCChhHHHHHHHHHHHHHHhcccccccccccCCC-----CChhcHHHHHHHHHHH
Q 013335 364 ASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-----MDEMEFTEAESNMNDL 418 (445)
Q Consensus 364 s~~~l~N~t~i~~~l~~l~~~~~~m~~krAflH~Y~~~G-----mee~eF~ea~~~l~~l 418 (445)
-+..+..+.+...+.+++.++|.- +..|.=.|..+| .+++|+.+|.....+.
T Consensus 14 ~~i~v~~~i~f~dL~~kIrdkf~~---~~~~~iKykDEGD~iti~sq~DLd~Ai~~a~~~ 70 (86)
T cd06408 14 RYIMIGPDTGFADFEDKIRDKFGF---KRRLKIKMKDDGDMITMGDQDDLDMAIDTARSE 70 (86)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC---CCceEEEEEcCCCCccccCHHHHHHHHHHHHHH
Confidence 346777888999999999999974 578888899998 5677888887766553
No 70
>PLN02408 phospholipase A1
Probab=21.73 E-value=1.7e+02 Score=29.91 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHhhcCCC--CceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCCccc
Q 013335 111 ELIDSVLDVVRKEAENCDCL--QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179 (445)
Q Consensus 111 ~~~e~~~d~ir~~~E~cD~l--qgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~ 179 (445)
.+.+++.+.|++.+++...- .=...=||+||+ ++...+-.|+..++..+.+.+..|-+|..|+..
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~~ 245 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGNRS 245 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCcccHH
Confidence 46788888888888876532 234456788654 566667777777766555555555566667643
No 71
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=20.56 E-value=2.8e+02 Score=28.95 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEeecCCCCccccchHHHHHHHHhhcCCceeeEEEEecCCCCC---cccchhhHHHHH
Q 013335 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS---DTVVEPYNATLS 188 (445)
Q Consensus 112 ~~e~~~d~ir~~~E~cD~lqgf~i~~s~~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~---~~~~~~yN~~ls 188 (445)
..+.-.+.|.+.+.. ..+++-|..+...|+|+++.+.+++.|-- .+...--.|..... ..+..+.|--..
T Consensus 145 ~~~~Y~~~l~~~i~~--~~~~lkVvvd~~~G~~~~~~~~ll~~lG~-----~v~~i~~~~d~~F~~~~p~p~~~~~l~~l 217 (443)
T cd03089 145 ILPDYIDRLLSDIKL--GKRPLKVVVDAGNGAAGPIAPQLLEALGC-----EVIPLFCEPDGTFPNHHPDPTDPENLEDL 217 (443)
T ss_pred CHHHHHHHHHHhccc--ccCCCeEEEECCCCchHHHHHHHHHHCCC-----EEEEecCCCCCCCCCCCcCCCCHHHHHHH
Confidence 444445555544421 13799999999999998888888887643 22223222321111 111112222222
Q ss_pred HHHHhh-cCCcceeecchh
Q 013335 189 VHQLVE-NADECMVLDNEA 206 (445)
Q Consensus 189 l~~L~e-~sd~~i~~dN~~ 206 (445)
.....+ .+|+.+.+|.|+
T Consensus 218 ~~~v~~~~adlgia~D~Da 236 (443)
T cd03089 218 IAAVKENGADLGIAFDGDG 236 (443)
T ss_pred HHHHHHcCCCEEEEecCCc
Confidence 222222 389999998775
No 72
>PTZ00489 glutamate 5-kinase; Provisional
Probab=20.54 E-value=4.1e+02 Score=25.80 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHhhcCCceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCcceeecch
Q 013335 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205 (445)
Q Consensus 154 ~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~L~e~sd~~i~~dN~ 205 (445)
...+.+.+..+.+..+++....-....+..|+.-++..|.+. .++|+=|+
T Consensus 86 ~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 86 MYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 345555555566666666533233334445888888888886 56677433
Done!