Query 013336
Match_columns 445
No_of_seqs 157 out of 1388
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 5.8E-22 2E-26 204.4 -2.8 330 45-439 134-473 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.7 2.8E-18 9.7E-23 174.3 10.1 298 47-428 129-433 (451)
3 3o7q_A L-fucose-proton symport 99.7 6.9E-16 2.4E-20 156.1 15.4 290 44-425 124-429 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.6 4.4E-15 1.5E-19 152.9 10.8 340 42-435 113-478 (491)
5 2gfp_A EMRD, multidrug resista 99.6 1.9E-15 6.6E-20 150.1 6.4 256 43-404 94-354 (375)
6 2cfq_A Lactose permease; trans 99.6 8.4E-16 2.9E-20 155.9 2.9 143 288-441 267-412 (417)
7 2xut_A Proton/peptide symporte 99.1 8E-11 2.7E-15 122.1 9.3 142 292-436 347-510 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.0 2.5E-10 8.4E-15 117.3 7.6 181 227-430 11-198 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.0 6.8E-10 2.3E-14 112.1 9.4 182 230-434 29-212 (451)
10 2gfp_A EMRD, multidrug resista 99.0 1.2E-09 3.9E-14 108.2 8.6 176 233-435 4-181 (375)
11 2xut_A Proton/peptide symporte 98.8 1.3E-08 4.3E-13 105.4 10.1 175 228-427 11-197 (524)
12 3o7q_A L-fucose-proton symport 98.7 4.9E-08 1.7E-12 98.1 10.3 114 285-404 66-182 (438)
13 2cfq_A Lactose permease; trans 98.2 1.7E-07 5.9E-12 94.4 -0.4 180 229-432 7-191 (417)
14 4gc0_A D-xylose-proton symport 97.9 8.5E-06 2.9E-10 83.1 6.1 109 288-400 63-186 (491)
15 2g9p_A Antimicrobial peptide l 22.4 29 0.00098 19.1 0.8 13 300-312 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.81 E-value=5.8e-22 Score=204.42 Aligned_cols=330 Identities=9% Similarity=0.008 Sum_probs=197.2
Q ss_pred HHHhccccccchhhHHHHhcCCCccchhhHHHHHHHHHHHhhHHHhccccccchhhhhhcccchhhhccccchhHHHHHH
Q 013336 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (445)
Q Consensus 45 ~lld~s~n~~~~p~~A~i~D~~p~~qr~~a~~~~~~~~~lG~~lG~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 124 (445)
.+..++.....+...+|++|.+|+++|++..++.+.+..+|.++++.++... ....+. .......+++.+.+.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~ 206 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI--ARSGDA-----SWLNTDGWRYMFASE 206 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSCT-----TTTTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh--cccccc-----ccccchhhHHHhhhh
Confidence 3445666677788999999999999999999999999999999999887642 111100 000113567777666
Q ss_pred HHHHHHHHhheeeEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccCCcccc-hhhhhcccccc
Q 013336 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESD-ANLKHISKKAE 203 (445)
Q Consensus 125 ai~~~i~~~~t~~~v~E~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 203 (445)
.+..++.. +..+.+||+|.+...+++.+++++. .+|... +...+++ .+.+. ..+
T Consensus 207 ~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~--------l~~~~~-------------~~~~~~~~~~~~~---~~~ 261 (491)
T 4gc0_A 207 CIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGI--------LRKIMG-------------NTLATQAVQEIKH---SLD 261 (491)
T ss_dssp HHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHH--------HHHHHH-------------HHHHHHHHHHHHH---HHH
T ss_pred hhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHh--------HHHhcC-------------CchhHHHHHHHHH---HHH
Confidence 66554443 3556789999876655442221100 000000 0000000 00000 000
Q ss_pred ccCCCCCCCccchHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhccccccceeeecCCCCCCChhhHHHHHHhhHHH
Q 013336 204 DTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (445)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~if~g~p~~~s~~~~~y~~gv~~g~ 283 (445)
+ .+.... .......++.....+...+.++.+...+..|.+.+..+ . +.++ . + ..
T Consensus 262 ---~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~------~---~-----~~ 315 (491)
T 4gc0_A 262 ---H-----GRKTGG--RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-L-GAST------D---I-----AL 315 (491)
T ss_dssp ---H-----HHHHTT--HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-S-SCCH------H---H-----HH
T ss_pred ---h-----hhhhhh--HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-c-CCCc------c---c-----hh
Confidence 0 000000 11223334444444444455555666777777654432 1 1110 0 0 01
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCchhhHHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccc--cccc-eecchhH
Q 013336 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGAN--QAIK-ITYSVPF 360 (445)
Q Consensus 284 ~~l~~~~i~~~i~s~i~~~l~~r~g~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Gi~-~~~svP~ 360 (445)
...++.++...+.+++..++.||+|||+..+.+...++++++..+.......+.+ ..++...+ .++. ...+++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI---VALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHHHTTTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHHHhHHHHHHH
Confidence 1223445667777888899999999999999999888888766554432211111 11111111 1112 3456889
Q ss_pred HHhhhhhccCCCCcccchhHHHHHHHHHHHHhhhcccccccc------ccCcchhHHHHHHHHHHHHHHhhheeccCCCC
Q 013336 361 AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL------FGGGNIPAFVLASLSALAGGVVATLKLPHLSS 434 (445)
Q Consensus 361 aLls~~~~~~~~~~G~~~gi~n~~~~l~qii~~~~~g~l~~~------~g~~~~~~f~~~~v~~ll~~~~~~~~vpe~~~ 434 (445)
.+.+|.+|.+ -||+.+|+.+...+++.++++.+.+.+.+. .+. ...|++.+++++++++++++++|||||
T Consensus 393 ~~~~E~fPt~--~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~--~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 393 VLLSEIFPNA--IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN--GFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHSSCTT--THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHhCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9999999986 568889999999999999999887765432 222 246788899999999999999999999
Q ss_pred CCccc
Q 013336 435 NSFRS 439 (445)
Q Consensus 435 ~~~~~ 439 (445)
||+..
T Consensus 469 ~tLee 473 (491)
T 4gc0_A 469 KTLEE 473 (491)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 99753
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.74 E-value=2.8e-18 Score=174.26 Aligned_cols=298 Identities=12% Similarity=0.075 Sum_probs=192.7
Q ss_pred HhccccccchhhHHHHhcCCCccchhhHHHHHHHHHHHhhHHHhccccccchhhhhhcccchhhhccccchhHHHHHHHH
Q 013336 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (445)
Q Consensus 47 ld~s~n~~~~p~~A~i~D~~p~~qr~~a~~~~~~~~~lG~~lG~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ai 126 (445)
..++.....++..+++.|..|+++|++++++.....++|.++|+.+++.+ .+.. +++|+.|++.++
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~------------g~w~~~f~~~~~ 194 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG--MAWF------------NDWHAALYMPAF 194 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH--HHHT------------CCSTTCTHHHHH
T ss_pred HHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHh------------ccHHHHHHHHHH
Confidence 33444456788999999999999999999999999999999999998752 1111 138888888877
Q ss_pred HHHHHHhheeeEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccCCcccchhhhhccccccccC
Q 013336 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (445)
Q Consensus 127 ~~~i~~~~t~~~v~E~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (445)
+.++..++..+.+||+|.....++. ++.++ +.+++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------------~~~~~~~~~---------- 233 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQSCGLPPI-EEYKN------------------------------DYPDDYNEK---------- 233 (451)
T ss_dssp HHHHHHHHHHHHCCCSSTTTCCCSC-TTTCC------------------------------C------------------
T ss_pred HHHHHHHHHHhhccCCHhhcCCCCh-hhhcc------------------------------cccccchhh----------
Confidence 7766666666778987654322111 00000 000000000
Q ss_pred CCCCCCccchHHHH-HHHhccCCHHHHHHHHHHHHHHHhhhhhhhccccccceeeecCCCCCCChhhHHHHHHhhHHHHH
Q 013336 207 GSFNDGPGAVLVNL-LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (445)
Q Consensus 207 ~~~~~~~~~~~~~~-~~~~~~~P~~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~if~g~p~~~s~~~~~y~~gv~~g~~~ 285 (445)
+ +++.+.++. ++...+ .+.++.+++..++.+++...+..|.+.|+.+ .++.++ .+ .| +.
T Consensus 234 ~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---------~~----~~-~~ 293 (451)
T 1pw4_A 234 A----EQELTAKQIFMQYVLP-NKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL---------DK----SS-WA 293 (451)
T ss_dssp ---------CCTHHHHHHTSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH---------HH----HH-HH
T ss_pred h----hcccccccchHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH---------HH----HH-HH
Confidence 0 001111221 233333 3677888888888888888888899988876 344331 01 12 33
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc--CchhhHHHHHHHHH-HHHHHHHHhhhccccccCCcceeeeccccccc--eecchhH
Q 013336 286 LLLNSVVLGVSSFLIEPMCRWI--GSRLVWAISNFIVF-ACMATTAIISVISVREYSGGIEHGIGANQAIK--ITYSVPF 360 (445)
Q Consensus 286 l~~~~i~~~i~s~i~~~l~~r~--g~r~l~~~g~~~~a-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~svP~ 360 (445)
...+++...+.+++.+++.||+ |+|+.+.++.++.+ ++++...+... .+.+ ...+...+.|++ ......+
T Consensus 294 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~g~~~~~~~~~~~ 368 (451)
T 1pw4_A 294 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA--GNPT---VDMICMIVIGFLIYGPVMLIG 368 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT--TCHH---HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc--cCHH---HHHHHHHHHHHHHhchHHHHH
Confidence 4456677788889999999999 99999887766665 44443222210 0111 112223334444 3334446
Q ss_pred HHhhhhhccCCCCcccchhHHHHHHHH-HHHHhhhccccccccccCcchhHHHHHHHHHHHHHHhhhee
Q 013336 361 AITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 428 (445)
Q Consensus 361 aLls~~~~~~~~~~G~~~gi~n~~~~l-~qii~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~~~~ 428 (445)
+++.+..|++ .+|+.+|+.+....+ ++.+++.+.|.+.+..|. ...|++.++++++++++..+.
T Consensus 369 ~~~~~~~~~~--~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 369 LHALELAPKK--AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHTSCTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 7888998875 689999999999999 999999999999988774 357888888888877766543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.66 E-value=6.9e-16 Score=156.14 Aligned_cols=290 Identities=11% Similarity=0.028 Sum_probs=176.5
Q ss_pred HHHHhccccccchhhHHHHhcCCCccchhhHHHHHHHHHHHhhHHHhccccccchhhhhhcccc------------hhhh
Q 013336 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTS------------RACC 111 (445)
Q Consensus 44 ~~lld~s~n~~~~p~~A~i~D~~p~~qr~~a~~~~~~~~~lG~~lG~~iG~~~~~~~~~~~~~~------------~~~~ 111 (445)
..+..++.....++..+++.|..|+++|++++++.....++|.++|+.+++.+ ..+..+...+ ....
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH-HHTSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccccCCcchhhhhhh
Confidence 34445555567789999999999999999999999999999999999999872 1011100000 0000
Q ss_pred ccccchhHHHHHHHHHHHHHHhhe-eeEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccCCcc
Q 013336 112 AACGNLKAAFLVAVVFLTLCALVT-IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHE 190 (445)
Q Consensus 112 ~~~~~~~~~f~i~ai~~~i~~~~t-~~~v~E~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (445)
....++|+.|++.+++.++..++. ....||++....+++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---------------------------------------- 242 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA---------------------------------------- 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc----------------------------------------
Confidence 000117888876555444433322 222343321100000
Q ss_pred cchhhhhccccccccCCCCCCCccchHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhccccc-cceeeecCCCCCCC
Q 013336 191 SDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDW-MGREVYHGDPKGND 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~l~~f~~~~g~~~~~~y~t~~-v~~~if~g~p~~~s 269 (445)
+ ++..+.+++ .+.+. +.++..++..++...+...+..|.+.| +.+ .++.++
T Consensus 243 ----------------~--~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---- 294 (438)
T 3o7q_A 243 ----------------K--QGSFSASLS----RLARI-RHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-IPGMTA---- 294 (438)
T ss_dssp ----------------S--TTSHHHHHH----HHTTC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTCCH----
T ss_pred ----------------c--ccchhhhHH----HHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcch----
Confidence 0 001122333 33333 456667777777777777788888888 654 444331
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCchhhHHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccc
Q 013336 270 HEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGAN 349 (445)
Q Consensus 270 ~~~~~y~~gv~~g~~~l~~~~i~~~i~s~i~~~l~~r~g~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
.+ .+ +....+.+...+..++.+++.||+|||+++.++.++.+++++...+.. +.+ ......+
T Consensus 295 -----~~----~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~ 356 (438)
T 3o7q_A 295 -----GF----AA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG----GHV----GLIALTL 356 (438)
T ss_dssp -----HH----HH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC----HHH----HHHHHHH
T ss_pred -----hH----HH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC----CcH----HHHHHHH
Confidence 01 11 333455677778889999999999999999998888877766544432 211 1222333
Q ss_pred cccc--eecchhHHHhhhhhccCCCCcccchhHHHHHHHHHHHHhhhccccccccccCcchhHHHHHHHHHHHHHHhh
Q 013336 350 QAIK--ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 425 (445)
Q Consensus 350 ~Gi~--~~~svP~aLls~~~~~~~~~~G~~~gi~n~~~~l~qii~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~ 425 (445)
.|+. ...++.+++..+..|++ ++...++.+ ...+++.++|.+.|.+.+..|.. ...|++.+++.++..++.
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 357 CSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI-PTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS-GGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHH
Confidence 4444 44556678888888864 566667766 66799999999999999988722 245666665555544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.57 E-value=4.4e-15 Score=152.92 Aligned_cols=340 Identities=11% Similarity=0.014 Sum_probs=173.2
Q ss_pred HHHHHHhccccccchhhHHHHhcCCCccc--hhhHHHHHHHHHHHhhHHHhccccccchhhhhhcccchhhhccccchhH
Q 013336 42 IGFWLLDLANNTVQGPARALLADLSGPDQ--RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKA 119 (445)
Q Consensus 42 ~g~~lld~s~n~~~~p~~A~i~D~~p~~q--r~~a~~~~~~~~~lG~~lG~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (445)
++..+..++.....++..+++.|..|+++ |+++.++......+|..+|+.+++. +.+. .++++
T Consensus 113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--l~~~-------------~g~~~ 177 (491)
T 4aps_A 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA--AQEA-------------AGYHV 177 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------------SCHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH--HHhh-------------hhHHH
Confidence 34444555556677889999999999988 7778888999999999999999886 2221 25899
Q ss_pred HHHHHHHHHHHHHhheeeEeeccCCCCCCCCCCCCCCCCCCCccccc-ccccCCCCCCC-------CCCCCCCccCCccc
Q 013336 120 AFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNA-ISKSKHDMPAA-------PNANGNKVESGHES 191 (445)
Q Consensus 120 ~f~i~ai~~~i~~~~t~~~v~E~p~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~ 191 (445)
.|++.++..+++.++..+..|+... ++++.+++ + .+.++.+. .+... ..+. ....+ .+.+.++
T Consensus 178 ~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~--~~~~~~~ 248 (491)
T 4aps_A 178 AFSLAAIGMFIGLLVYYFGGKKTLD---PHYLRPTD-P-LAPEEVKPLLVKVS--LAVAGFIAIIVVMNLV--GWNSLPA 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC---SCCSCCSC-C-CSHHHHHHHHHHCC--CCCHHHHHHHHHHHHH--SSCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccc---ccccCCCC-c-cccchhHHHHHHHH--HHHHHHHHHHHHHHhc--cCccccc
Confidence 9999877766666554433333221 11110000 0 00000000 00000 0000 00000 0000000
Q ss_pred chhhhhc-------cccccccCCCCCCCccchHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhccccccceeeecCC
Q 013336 192 DANLKHI-------SKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGD 264 (445)
Q Consensus 192 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~if~g~ 264 (445)
....... ....+..++ ...... ..+. ......+++..++.|+.+.....+.+.|..+ .++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 317 (491)
T 4aps_A 249 YINLLTIVAIAIPVFYFAWMISS-----VKVTST----EHLR-VVSYIPLFIAAVLFWAIEEQGSVVLATFAAE-RVDSS 317 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH-SCCCS
T ss_pred chhhhhHHHHHHHHHHHHHHhhc-----ccccHH----HHHH-HHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HhccC
Confidence 0000000 000000000 000000 0000 0113334555566666666666666666654 33332
Q ss_pred CCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCchhhHH-----HHHHHHHHHHHHHHHhhhccc--cc
Q 013336 265 PKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA-----ISNFIVFACMATTAIISVISV--RE 337 (445)
Q Consensus 265 p~~~s~~~~~y~~gv~~g~~~l~~~~i~~~i~s~i~~~l~~r~g~r~l~~-----~g~~~~ai~~~~~~~~~~~~~--~~ 337 (445)
+. +.+ +.....++...+.+.+.+++.||+|||+... .+.++.+++++.+.+...... +.
T Consensus 318 ~~---------~~~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 318 WF---------PVS-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp SS---------CSG-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred cc---------CHH-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11 011 1122344556666778899999999986654 666777666654444321100 00
Q ss_pred cCCcceeeeccccccc--eecchhHHHhhhhhccCCCCcccchhHHHHHHHHHHHHhhhccccccccccCcchhHHHHHH
Q 013336 338 YSGGIEHGIGANQAIK--ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLAS 415 (445)
Q Consensus 338 ~~~~~~~~~~~~~Gi~--~~~svP~aLls~~~~~~~~~~G~~~gi~n~~~~l~qii~~~~~g~l~~~~g~~~~~~f~~~~ 415 (445)
...+.......+.|++ ...+..++++.|..|++ .+|+.+|+.+....++.++++.+.+.+.+. +. ...|.+.+
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~--~~~~~~~~ 458 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA--FNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SE--VAYFSYFG 458 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT--CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-ST--THHHHHTH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cH--HHHHHHHH
Confidence 0000111122334544 44556688899999986 578999999999999999999998887764 32 34677777
Q ss_pred HHHHHHHHhhheeccCCCCC
Q 013336 416 LSALAGGVVATLKLPHLSSN 435 (445)
Q Consensus 416 v~~ll~~~~~~~~vpe~~~~ 435 (445)
+++++++++.+++.|+.+.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 459 LGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888877777676766554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.56 E-value=1.9e-15 Score=150.11 Aligned_cols=256 Identities=12% Similarity=-0.006 Sum_probs=165.1
Q ss_pred HHHHHhccccccchhhHHHHhcCCCccchhhHHHHHHHHHHHhhHHHhccccccchhhhhhcccchhhhccccchhHHHH
Q 013336 43 GFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFL 122 (445)
Q Consensus 43 g~~lld~s~n~~~~p~~A~i~D~~p~~qr~~a~~~~~~~~~lG~~lG~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 122 (445)
+..+..++.....+...+++.|..|+++|++++++......+|..+|+.+++.+ .+. .++|+.|.
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~-------------~~~~~~~~ 158 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL--DTM-------------WNWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS--SCH-------------HHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHh-------------ccHHHHHH
Confidence 334455666667788999999999999999999999999999999999998762 211 15888999
Q ss_pred HHHHHHHHHHhheeeEeeccCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccCCcccchhhhhccccc
Q 013336 123 VAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKA 202 (445)
Q Consensus 123 i~ai~~~i~~~~t~~~v~E~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
+.+++.++..++..+.+||++..+.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 187 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPRTR--------------------------------------------------- 187 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCCCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCccccc---------------------------------------------------
Confidence 88887777776666778886532111100
Q ss_pred cccCCCCCCCccchHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhccccccceeeecCCCCCCChhhHHHHHHhhHH
Q 013336 203 EDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREG 282 (445)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~if~g~p~~~s~~~~~y~~gv~~g 282 (445)
.+.++++.+++ |.++.+++..++.+.+...+..|.+.|+.+ .++.+ .. ..|
T Consensus 188 ----------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~------------~~-~~g 238 (375)
T 2gfp_A 188 ----------LLTSYKTLFGN-----SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGLS------------SM-TVS 238 (375)
T ss_dssp ----------TTTCSTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHHHH------------HH-HHH
T ss_pred ----------HHHHHHHHhcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC------------HH-HHH
Confidence 01122333332 556777788888888888888888887765 22221 10 122
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCchhhHHHHHHH-HHHHHH--HHHHhhhccccccCCcceeeeccccccc--eecc
Q 013336 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFI-VFACMA--TTAIISVISVREYSGGIEHGIGANQAIK--ITYS 357 (445)
Q Consensus 283 ~~~l~~~~i~~~i~s~i~~~l~~r~g~r~l~~~g~~~-~ai~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~s 357 (445)
+.....++...+.+++.+++.||+++|. ..+... ..+++. ...... ..+.+ ...+...+.|++ ....
T Consensus 239 -~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~l~g~~~~~~~~ 310 (375)
T 2gfp_A 239 -ILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG--VMNVW---TLLVPAALFFFGAGMLFP 310 (375)
T ss_dssp -HHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH--HHHHH---HHHHHHHHHHHHHHHTSS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc--cccHH---HHHHHHHHHHHHHHHhhH
Confidence 3334456677777888899999988732 222222 111111 111110 00111 111222334444 4455
Q ss_pred hhHHHhhhhhccCCCCcccchhHHHHHHHHHHHHhhhcccccccccc
Q 013336 358 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 404 (445)
Q Consensus 358 vP~aLls~~~~~~~~~~G~~~gi~n~~~~l~qii~~~~~g~l~~~~g 404 (445)
..++++.|..| + .+|+.+|+.|....+++++++.+.|.+.+..+
T Consensus 311 ~~~~~~~~~~p-~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 311 LATSGAMEPFP-F--LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp TTHHHHHTHHH-H--HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHHhCC-c--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 66788889888 4 57999999999999999999999998876544
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.55 E-value=8.4e-16 Score=155.91 Aligned_cols=143 Identities=11% Similarity=0.053 Sum_probs=100.6
Q ss_pred HHHHHHHHHhhhhhhhhhhcCchhhHHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccccccc--eecchhHHHhhh
Q 013336 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK--ITYSVPFAITAE 365 (445)
Q Consensus 288 ~~~i~~~i~s~i~~~l~~r~g~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~svP~aLls~ 365 (445)
+..+...+..++.+++.||+|||++...+.++++++++...+.. +.+ ...+...+.++. ......+++++|
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT----SAL---EVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC----SHH---HHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc----cHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666788899999999999999888888777655443321 211 111112222322 223334678899
Q ss_pred hhccCCCCcccchhH-HHHHHHHHHHHhhhccccccccccCcchhHHHHHHHHHHHHHHhhheeccCCCCCCcccCC
Q 013336 366 LTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSNSFRSSG 441 (445)
Q Consensus 366 ~~~~~~~~~G~~~gi-~n~~~~l~qii~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~~~~vpe~~~~~~~~~~ 441 (445)
..|++ .+|+.+|+ +|+...++++++|.+.|.+.+..|. ...|.+.++++++++++..+..||+|..+..++.
T Consensus 340 ~~p~~--~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T 2cfq_A 340 QFEVR--FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412 (417)
T ss_dssp HSCHH--HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--HHHHHHHHHHHHHHHHHHTTSSCCSCTTCSSSSS
T ss_pred HCCHH--HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHH
Confidence 99876 57888888 5889999999999999998887663 3568888888888888777778888777766543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.13 E-value=8e-11 Score=122.06 Aligned_cols=142 Identities=8% Similarity=-0.066 Sum_probs=74.9
Q ss_pred HHHHHhhhhhhhh----hhcCc----hhhHHHHHHHHHHHHHHHHHhhhcccc--ccCCcceeeeccccccc--eecchh
Q 013336 292 VLGVSSFLIEPMC----RWIGS----RLVWAISNFIVFACMATTAIISVISVR--EYSGGIEHGIGANQAIK--ITYSVP 359 (445)
Q Consensus 292 ~~~i~s~i~~~l~----~r~g~----r~l~~~g~~~~ai~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Gi~--~~~svP 359 (445)
...+.+.+.+++. +|.|+ ++...++.++.+++++.+.+......+ ....+.......+.|++ ......
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 426 (524)
T 2xut_A 347 LVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATG 426 (524)
T ss_dssp GHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555543 44433 345556777777766554433211000 00000111122334444 344455
Q ss_pred HHHhhhhhccCCCCcccchhHHHHHHHHHHHHhhhcccccccccc----------CcchhHHHHHHHHHHHHHHhhheec
Q 013336 360 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG----------GGNIPAFVLASLSALAGGVVATLKL 429 (445)
Q Consensus 360 ~aLls~~~~~~~~~~G~~~gi~n~~~~l~qii~~~~~g~l~~~~g----------~~~~~~f~~~~v~~ll~~~~~~~~v 429 (445)
++++.+..|++ .+|+.+|+.|+...+++++++.+.|.+.+..+ .. ...|++.++++++++++..++.
T Consensus 427 ~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 427 LEFAYSQAPKA--MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVT-AFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp TTTHHHHCCTT--CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhCcHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 67788888875 67999999999999999999999998876321 10 1236777777787777776677
Q ss_pred cCCCCCC
Q 013336 430 PHLSSNS 436 (445)
Q Consensus 430 pe~~~~~ 436 (445)
|+.+.|.
T Consensus 504 ~~~~~~~ 510 (524)
T 2xut_A 504 RSYQMQD 510 (524)
T ss_dssp -------
T ss_pred HHhccch
Confidence 7766554
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.03 E-value=2.5e-10 Score=117.25 Aligned_cols=181 Identities=13% Similarity=0.065 Sum_probs=130.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhccccccceee----ecCCCCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh
Q 013336 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREV----YHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEP 302 (445)
Q Consensus 227 ~P~~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~i----f~g~p~~~s~~~~~y~~gv~~g~~~l~~~~i~~~i~s~i~~~ 302 (445)
.|+.++.++...++..++++.+..+.+.|+.+.. ++-++ . ..| +....+.+...+.+++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------~---~~~-~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITR----------A---TAA-SIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCH----------H---HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCH----------H---HHH-HHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888776521 33221 1 122 3445677788888999999
Q ss_pred hhhh-cCchhhHHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccccccc--eecchhHHHhhhhhccCCCCcccchh
Q 013336 303 MCRW-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK--ITYSVPFAITAELTADSGGGQGLAIG 379 (445)
Q Consensus 303 l~~r-~g~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~svP~aLls~~~~~~~~~~G~~~g 379 (445)
++|| +|||+++.++.++.+++.+.+++.. +.+ ...+...+.|++ ...+...++++|..|+++|++|..++
T Consensus 77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 149 (491)
T 4aps_A 77 VADRIIGARPAVFWGGVLIMLGHIVLALPF----GAS---ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS 149 (491)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHSCC----STT---HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHhh----hHH---HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeeh
Confidence 9999 8999999999999988877655432 322 122233446665 44555678999999987666888999
Q ss_pred HHHHHHHHHHHHhhhccccccccccCcchhHHHHHHHHHHHHHHhhheecc
Q 013336 380 VLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 430 (445)
Q Consensus 380 i~n~~~~l~qii~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~~~~vp 430 (445)
+++....++.++++.+++.+.+..|- .+.|++.++..+++.+...+..|
T Consensus 150 ~~~~~~~~g~~~~~~~~~~l~~~~g~--~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 150 IFVFGINLGAFIAPLIVGAAQEAAGY--HVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999998887663 45777877777776665544433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.00 E-value=6.8e-10 Score=112.15 Aligned_cols=182 Identities=14% Similarity=0.031 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccccceeeecCCCCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCc
Q 013336 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (445)
Q Consensus 230 ~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~if~g~p~~~s~~~~~y~~gv~~g~~~l~~~~i~~~i~s~i~~~l~~r~g~ 309 (445)
.+..+++..++..+....+..+.+.+..+ . .++. ..| +....+.+...+.+++.+++.||+||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~s~~-------------~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~ 91 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G--FSRG-------------DLG-FALSGISIAYGFSKFIMGSVSDRSNP 91 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T--TCSS-------------CHH-HHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--ccHh-------------HHH-HHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 34455666777777766666677766655 2 3321 122 33445677788889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccccccc--eecchhHHHhhhhhccCCCCcccchhHHHHHHHH
Q 013336 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK--ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI 387 (445)
Q Consensus 310 r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~svP~aLls~~~~~~~~~~G~~~gi~n~~~~l 387 (445)
|+++.++.++.+++.+..++..... +.+. ..++...+.|++ .....-.++++|..|++ ++|+.+|+.+....+
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~--~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWAT-SSIA--VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK--ERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHH-SSSS--HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT--HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcc-ccHH--HHHHHHHHHHHHhhhccchHHHHHHHHCCch--hhhHHHHHHHHHHHH
Confidence 9999999999999887776621100 2221 122234456665 44455578899999875 689999999999999
Q ss_pred HHHHhhhccccccccccCcchhHHHHHHHHHHHHHHhhheeccCCCC
Q 013336 388 PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 434 (445)
Q Consensus 388 ~qii~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~~~~vpe~~~ 434 (445)
+.++++.+++.+.+..|.. .+.|++.++++++.+++..+++||++.
T Consensus 167 g~~~g~~~~~~l~~~~g~w-~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDW-HAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCS-TTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999998877766622 356888888888777777677777543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.95 E-value=1.2e-09 Score=108.16 Aligned_cols=176 Identities=13% Similarity=0.128 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhhhhhhhccccccceeeecCCCCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhhcCchhh
Q 013336 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 312 (445)
Q Consensus 233 ~l~l~~f~~~~g~~~~~~y~t~~v~~~if~g~p~~~s~~~~~y~~gv~~g~~~l~~~~i~~~i~s~i~~~l~~r~g~r~l 312 (445)
.+++..++.+++...+..+.+.+..+ ++.++. + .| +....+.+...+.+++.+++.||+|||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~---------~----~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 67 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD--LNVREG---------A----VQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPV 67 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--SSSTTH---------H----HH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH--cCCCHH---------H----HH-HHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 45667777777777666666655443 333320 1 22 33445677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccccccc--eecchhHHHhhhhhccCCCCcccchhHHHHHHHHHHH
Q 013336 313 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK--ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQM 390 (445)
Q Consensus 313 ~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~svP~aLls~~~~~~~~~~G~~~gi~n~~~~l~qi 390 (445)
+.++.++.+++.+...+.. +.+ ...+...+.|++ ...+...++++|..|++ ++++.+|+.+....++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~----~~~---~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~ 138 (375)
T 2gfp_A 68 ILVGMSIFMLATLVAVTTS----SLT---VLIAASAMQGMGTGVGGVMARTLPRDLYERT--QLRHANSLLNMGILVSPL 138 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----cHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHH
Confidence 9999999998887766654 222 122233445655 45566678899999875 678999999999999999
Q ss_pred HhhhccccccccccCcchhHHHHHHHHHHHHHHhhheeccCCCCC
Q 013336 391 IVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSN 435 (445)
Q Consensus 391 i~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~~~~vpe~~~~ 435 (445)
+++.+.+.+.+..|- ...|.+.++..++..+...+.+||++.+
T Consensus 139 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 139 LAPLIGGLLDTMWNW--RACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHSSCHHHH--HHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred hhHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999988876653 3568888888887777676788886544
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.79 E-value=1.3e-08 Score=105.44 Aligned_cols=175 Identities=13% Similarity=-0.010 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhccccccceeeec------CCCCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013336 228 PPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYH------GDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIE 301 (445)
Q Consensus 228 P~~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~if~------g~p~~~s~~~~~y~~gv~~g~~~l~~~~i~~~i~s~i~~ 301 (445)
|+.++.+++..++..++++.+..+.+.|+.+ .++ -++. ..| +....+.+...+.+++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~s~~-------------~~g-~~~~~~~~~~~~~~~~~G 75 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMT-ALLLSIPEELRGA-------------VAK-DVFHSFVIGVYFFPLLGG 75 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSCCSSSTTTT-------------THH-HHHHHHHHHHHHTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccCHH-------------HHH-HHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888877765 344 2221 122 334456677778899999
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccccccc--eecchhHHHhhhhhccCCCCcccc-
Q 013336 302 PMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK--ITYSVPFAITAELTADSGGGQGLA- 377 (445)
Q Consensus 302 ~l~~r~-g~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~svP~aLls~~~~~~~~~~G~~- 377 (445)
++.||+ |||+++.++.++.+++.+.+.+.. ..+. ...+...+.|++ .....-.++++|..|++ ++|+.
T Consensus 76 ~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~ 147 (524)
T 2xut_A 76 WIADRFFGKYNTILWLSLIYCVGHAFLAIFE----HSVQ--GFYTGLFLIALGSGGIKPLVSSFMGDQFDQS--NKSLAQ 147 (524)
T ss_dssp HHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS----SCHH--HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT--TTTHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHhc----ccHH--HHHHHHHHHHHhccccchhHHHHHHHHcCcc--chHHHH
Confidence 999999 999999999999888777655543 0111 122223445655 44455578899999986 44544
Q ss_pred --hhHHHHHHHHHHHHhhhccccccccccCcchhHHHHHHHHHHHHHHhhhe
Q 013336 378 --IGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 427 (445)
Q Consensus 378 --~gi~n~~~~l~qii~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~~~ 427 (445)
+++.+....++.++++.+.+.+.+..|. .+.|++.+++.+++.++..+
T Consensus 148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~--~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 148 KAFDMFYFTINFGSFFASLSMPLLLKNFGA--AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHTSCH--HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHH
Confidence 4449999999999999999988876653 35677777777776665543
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.69 E-value=4.9e-08 Score=98.11 Aligned_cols=114 Identities=6% Similarity=-0.201 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCchhhHHHHHHHHHHHHHHHHHhhhccccccCCcceeeeccccccc--eecchhHHH
Q 013336 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIK--ITYSVPFAI 362 (445)
Q Consensus 285 ~l~~~~i~~~i~s~i~~~l~~r~g~r~l~~~g~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~--~~~svP~aL 362 (445)
....+.+...+.+++.+++.||+|||++++++.++.+++.++..+..... +.+ ...+...+.|++ ...+.-.++
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~---~l~~~~~l~G~~~~~~~~~~~~~ 141 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM-NYT---LFLVGLFIIAAGLGCLETAANPF 141 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc-cHH---HHHHHHHHHHhhHHHhhhhHHHH
Confidence 34466777788899999999999999999999999998887663322211 211 122234456665 444555788
Q ss_pred hhhhhccCCCCcccchhHHHHHHHHHHHHhhhcccccc-cccc
Q 013336 363 TAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD-ALFG 404 (445)
Q Consensus 363 ls~~~~~~~~~~G~~~gi~n~~~~l~qii~~~~~g~l~-~~~g 404 (445)
++|..|++ ++|..+|+.+....++.++++.+++.+. +..+
T Consensus 142 ~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 142 VTVLGPES--SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHSSCST--THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHcCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999875 6799999999999999999999999887 4443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.19 E-value=1.7e-07 Score=94.42 Aligned_cols=180 Identities=11% Similarity=0.026 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccceeeecCCCCCCChhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013336 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (445)
Q Consensus 229 ~~l~~l~l~~f~~~~g~~~~~~y~t~~v~~~if~g~p~~~s~~~~~y~~gv~~g~~~l~~~~i~~~i~s~i~~~l~~r~g 308 (445)
|.++.++...++.++++..+..|.+.|+.+ .++-++. + .| +.+..+.+...+.+.+.|+++||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~---------~----~g-~~~~~~~~~~~i~~~~~G~lsDr~G 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-INHISKS---------D----TG-IIFAAISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-TTCCCTT---------T----SH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHH---------H----HH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556667777777777777778888888765 2443321 1 22 3334556777888999999999999
Q ss_pred chhhHHHHHHHHHHHHHHH---HHhhhccccccCCcceeeecccccc--ceecchhHHHhhhhhccCCCCcccchhHHHH
Q 013336 309 SRLVWAISNFIVFACMATT---AIISVISVREYSGGIEHGIGANQAI--KITYSVPFAITAELTADSGGGQGLAIGVLNL 383 (445)
Q Consensus 309 ~r~l~~~g~~~~ai~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Gi--~~~~svP~aLls~~~~~~~~~~G~~~gi~n~ 383 (445)
||++++++.++++++.... .+......+ ......+.|+ +.......+++.++.++..|++|..+|..+.
T Consensus 72 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 145 (417)
T 2cfq_A 72 LRKYLLWIITGMLVMFAPFFIFIFGPLLQYN------ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM 145 (417)
T ss_dssp TCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT------CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHH
Confidence 9999998877765432111 111110001 0111111111 1111112233444444322346777888888
Q ss_pred HHHHHHHHhhhccccccccccCcchhHHHHHHHHHHHHHHhhheeccCC
Q 013336 384 AIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 432 (445)
Q Consensus 384 ~~~l~qii~~~~~g~l~~~~g~~~~~~f~~~~v~~ll~~~~~~~~vpe~ 432 (445)
...++..+++.+++.+.+. +. ...|+++++..++..+...+..||+
T Consensus 146 ~~~~g~~~~~~l~~~l~~~-~~--~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 146 FGCVGWALGASIVGIMFTI-NN--QFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp STTTHHHHHHHHHHHHHHH-CS--HHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHh-ch--hHHHHHHHHHHHHHHHHHHHcCccc
Confidence 8888888999888877653 32 3467766666555544443344444
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.92 E-value=8.5e-06 Score=83.06 Aligned_cols=109 Identities=14% Similarity=-0.034 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcCchhhHHHHHHHHHHHHHHHHHhhhccc-------------cccCCcceeeeccccccc-
Q 013336 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISV-------------REYSGGIEHGIGANQAIK- 353 (445)
Q Consensus 288 ~~~i~~~i~s~i~~~l~~r~g~r~l~~~g~~~~ai~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~Gi~- 353 (445)
.+.+..++.+++.|++.||+|||+.+.++.+++.++.+++++...... +.+. ..++.-.+.|++
T Consensus 63 ~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~--~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 63 SALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP--EFVIYRIIGGIGV 140 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH--HHHHHHHHHHHHH
Confidence 345566778899999999999999999999999988777765321100 0010 011123345555
Q ss_pred -eecchhHHHhhhhhccCCCCcccchhHHHHHHHHHHHHhhhcccccc
Q 013336 354 -ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 400 (445)
Q Consensus 354 -~~~svP~aLls~~~~~~~~~~G~~~gi~n~~~~l~qii~~~~~g~l~ 400 (445)
....+-.++++|..|++ .+|...++.+.+..++.++++.....+.
T Consensus 141 G~~~~~~~~~i~E~~p~~--~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPAH--IRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHTTSCGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHH--hhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 33444558899999986 6799999999999999999887765543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=22.38 E-value=29 Score=19.12 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=10.4
Q ss_pred hhhhhhhcCchhh
Q 013336 300 IEPMCRWIGSRLV 312 (445)
Q Consensus 300 ~~~l~~r~g~r~l 312 (445)
.+++++++|||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4688999999854
Done!