BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013337
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 203/370 (54%), Gaps = 26/370 (7%)
Query: 67 SQGSKYKDASGILKDGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVD 126
++G+ + + + I + F RF RGLL+DTSRHY PL I + +D MAY KLNV HWH+VD
Sbjct: 128 AEGTFFINKTEI--EDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVD 185
Query: 127 TQSFPLEIPSYPKLW-DGAYS-TSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWG 184
SFP E ++P+L G+Y+ + YT D E++ YA+ RGI VLAE D PGH LSWG
Sbjct: 186 DPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWG 245
Query: 185 KGYPSLW-PSKDCQE------PLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTS 237
G P L P E P++ S T++ + + S VF ++HLGGDEV+ +
Sbjct: 246 PGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFT 305
Query: 238 CWTLTPHVSKWLKEHSMNES--QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPK 295
CW P + ++++ E Q +++ I +G V W+E F+N K+ P
Sbjct: 306 CWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDN-KVKIQPD 364
Query: 296 TVVHNWLXXXXXXXXXXXXL------RCIVSNQDKWYLDHLD--TTWEQFYMNEPLTNIT 347
T++ W L R ++S WYL+ + W+ FY+ EPL
Sbjct: 365 TIIQVWREDIPVNYMKELELVTKAGFRALLSA--PWYLNRISYGPDWKDFYVVEPLAFEG 422
Query: 348 KSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAH 407
EQ+ LVIGGE CMWGE VD +++ +WPRA A AERLW+ +KL + RL+H
Sbjct: 423 TPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS--NKLTSDLTFAYERLSH 480
Query: 408 FRCLLNQRGI 417
FRC L +RG+
Sbjct: 481 FRCELLRRGV 490
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 189/347 (54%), Gaps = 18/347 (5%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-G 143
RFS RG+LIDTSRHY P+ II +D+MA+ K NVLHWHIVD QSFP + ++P+L + G
Sbjct: 158 RFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKG 217
Query: 144 AYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWP-------SKDC 196
+YS S YT D ++ YA+ RGI VL E D PGH LSWGKG L D
Sbjct: 218 SYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDS 277
Query: 197 QEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-N 255
P++ + T+ + + S+VF +F+HLGGDEV CW P + ++++
Sbjct: 278 FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGT 337
Query: 256 ESQAYQYFVLQA--QKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXX 313
+ + + F +Q IA ++ IV W+E F++ KL+P T+V W
Sbjct: 338 DFKKLESFYIQKVLDIIATINKGSIV-WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRV 395
Query: 314 XLRCI-VSNQDKWYLDHLD--TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDAS 370
V WYLD + W ++Y EPL +Q++L IGGE C+WGE VDA+
Sbjct: 396 TASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 455
Query: 371 DIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 417
++ +WPRA+A ERLW+ D ++ RL RC + +RGI
Sbjct: 456 NLTPRLWPRASAVGERLWSSKD--VRDMDDAYDRLTRHRCRMVERGI 500
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 189/347 (54%), Gaps = 18/347 (5%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-G 143
RFS RG+LIDTSRHY P+ II +D+MA+ K NVLHWHIVD QSFP + ++P+L + G
Sbjct: 199 RFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKG 258
Query: 144 AYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWP-------SKDC 196
+YS S YT D ++ YA+ RGI VL E D PGH LSWGKG L D
Sbjct: 259 SYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDS 318
Query: 197 QEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-N 255
P++ + T+ + + S+VF +F+HLGGDEV CW P + ++++
Sbjct: 319 FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGT 378
Query: 256 ESQAYQYFVLQA--QKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXX 313
+ + + F +Q IA ++ IV W+E F++ KL+P T+V W
Sbjct: 379 DFKKLESFYIQKVLDIIATINKGSIV-WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRV 436
Query: 314 XLRCI-VSNQDKWYLDHLD--TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDAS 370
V WYLD + W ++Y EPL +Q++L IGGE C+WGE VDA+
Sbjct: 437 TASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 496
Query: 371 DIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 417
++ +WPRA+A ERLW+ D ++ RL RC + +RGI
Sbjct: 497 NLTPRLWPRASAVGERLWSSKD--VRDMDDAYDRLTRHRCRMVERGI 541
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 189/347 (54%), Gaps = 18/347 (5%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-G 143
RFS RG+LIDTSRHY P+ II +D+MA+ K NVLHWHIVD QSFP + ++P+L + G
Sbjct: 150 RFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKG 209
Query: 144 AYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWP-------SKDC 196
+YS S YT D ++ YA+ RGI VL E D PGH LSWGKG L D
Sbjct: 210 SYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDS 269
Query: 197 QEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-N 255
P++ + T+ + + S+VF +F+HLGGDEV CW P + ++++
Sbjct: 270 FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGT 329
Query: 256 ESQAYQYFVLQA--QKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXX 313
+ + + F +Q IA ++ IV W+E F++ KL+P T+V W
Sbjct: 330 DFKKLESFYIQKVLDIIATINKGSIV-WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRV 387
Query: 314 XLRCI-VSNQDKWYLDHLD--TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDAS 370
V WYLD + W ++Y EPL +Q++L IGGE C+WGE VDA+
Sbjct: 388 TASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 447
Query: 371 DIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 417
++ +WPRA+A ERLW+ D ++ RL RC + +RGI
Sbjct: 448 NLTPRLWPRASAVGERLWSSKD--VRDMDDAYDRLTRHRCRMVERGI 492
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 189/347 (54%), Gaps = 18/347 (5%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-G 143
RFS RG+LIDTSRHY P+ II +D+MA+ K NVLHWHIVD QSFP + ++P+L + G
Sbjct: 150 RFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKG 209
Query: 144 AYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWP-------SKDC 196
+YS S YT D ++ YA+ RGI VL E D PGH LSWGKG L D
Sbjct: 210 SYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDS 269
Query: 197 QEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-N 255
P++ + T+ + + S+VF +F+HLGGDEV CW P + ++++
Sbjct: 270 FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGT 329
Query: 256 ESQAYQYFVLQA--QKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLXXXXXXXXXXX 313
+ + + F +Q IA ++ IV W+E F++ KL+P T+V W
Sbjct: 330 DFKKLESFYIQKVLDIIATINKGSIV-WQEVFDD-KAKLAPGTIVEVWKDSAYPEELSRV 387
Query: 314 XLRCI-VSNQDKWYLDHLD--TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDAS 370
V WYLD + W ++Y EPL +Q++L IGGE C+WGE VDA+
Sbjct: 388 TASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 447
Query: 371 DIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGI 417
++ +WPRA+A ERLW+ D ++ RL RC + +RGI
Sbjct: 448 NLTPRLWPRASAVGERLWSSKD--VRDMDDAYDRLTRHRCRMVERGI 492
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 173/378 (45%), Gaps = 57/378 (15%)
Query: 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GA 144
+ +RG+L+DT+R+Y + IK I++MA KLN HWHI D+QSFP P L+ GA
Sbjct: 190 YPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGA 249
Query: 145 YSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL----------WPSK 194
S + YT A E+V + +RG+ VL E D P H G+G+ W S
Sbjct: 250 LSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKSY 306
Query: 195 DCQEP----LDVSNEFTFKVIDGILSDFSKVFKYKFV-HLGGDEVNTSCWTLTPHVSKWL 249
C EP L+ + + ++ ++ I SD ++VF + H+GGDEV+ +CW + + ++
Sbjct: 307 -CGEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFM 365
Query: 250 KEHSMN---ES--QAYQYFVLQAQK---IALLHGYEIVNWEETFNNFG------NKLSPK 295
++ + ES + + YF +AQ A ++ W T N+ NK
Sbjct: 366 MQNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNK--DD 423
Query: 296 TVVHNWLXXX--XXXXXXXXXLRCIVSNQDKWYLD--------------HLDTTWEQFYM 339
++ W R I+SN D Y D W++ Y
Sbjct: 424 YIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYD 483
Query: 340 NEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAK 399
N P + E + V+GGE +W E D S + +WPRAAA AERLW + A +
Sbjct: 484 NSPA--VIALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA---EPATSWQ 538
Query: 400 QVTGRLAHFRCLLNQRGI 417
R+ H R L + GI
Sbjct: 539 DAEYRMLHIRERLVRMGI 556
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/378 (30%), Positives = 172/378 (45%), Gaps = 57/378 (15%)
Query: 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GA 144
+ +RG+L+DT+R+Y + IK I++MA KLN HWHI D+QSFP P L+ GA
Sbjct: 187 YPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGA 246
Query: 145 YSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL----------WPSK 194
S + YT A E+V + +RG+ VL E D P H G+G+ W S
Sbjct: 247 LSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKSY 303
Query: 195 DCQEP----LDVSNEFTFKVIDGILSDFSKVFK-YKFVHLGGDEVNTSCWTLTPHVSKWL 249
C EP L+ + + ++ ++ I SD ++VF H+GGDEV+ +CW + + ++
Sbjct: 304 -CVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFM 362
Query: 250 KEHSMN---ES--QAYQYFVLQAQK---IALLHGYEIVNWEETFNNFG------NKLSPK 295
++ + ES + + YF +AQ A ++ W T N+ NK
Sbjct: 363 MQNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNK--DD 420
Query: 296 TVVHNWLXXX--XXXXXXXXXLRCIVSNQDKWYLD--------------HLDTTWEQFYM 339
++ W R I+SN D Y D W++ Y
Sbjct: 421 YIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYD 480
Query: 340 NEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAK 399
N P + E + V+GGE +W E D S + +WPRAAA AERLW + A +
Sbjct: 481 NSPA--VIALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA---EPATSWQ 535
Query: 400 QVTGRLAHFRCLLNQRGI 417
R+ H R L + GI
Sbjct: 536 DAEYRMLHIRERLVRMGI 553
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 169/377 (44%), Gaps = 55/377 (14%)
Query: 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GA 144
+ +RG+L+DT+R+Y + IK I++MA KLN HWHI D+QSFP P L+ GA
Sbjct: 187 YPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTNHWHITDSQSFPFVTTKRPNLYKFGA 246
Query: 145 YSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL----------WPSK 194
S + YT A E+V + +RG+ VL E D P H G+G+ W S
Sbjct: 247 LSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHV---GEGWQDTDLTVCFKAEPWKSY 303
Query: 195 DCQEP---LDVSNEFTFKVIDGILSDFSKVFK-YKFVHLGGDEVNTSCWTLTPHVSKWLK 250
P L+ + + ++ ++ I SD ++VF H+GGDEV+ +CW + + ++
Sbjct: 304 CVAPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSSDSIQNFMM 363
Query: 251 EHSMN---ES--QAYQYFVLQAQK---IALLHGYEIVNWEETFNNFG------NKLSPKT 296
++ + ES + + YF +AQ A ++ W T N+ NK
Sbjct: 364 QNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTNYKHIDDYLNK--DDY 421
Query: 297 VVHNWLXXX--XXXXXXXXXLRCIVSNQDKWYLD--------------HLDTTWEQFYMN 340
++ W R I+SN D Y D W++ Y N
Sbjct: 422 IIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDN 481
Query: 341 EPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQ 400
P + E + V+GGE +W E D S + +WPRAAA AERLW + A +
Sbjct: 482 SPA--VIALEHRDQVLGGEAALWSEQSDTSTLDGRLWPRAAALAERLWA---EPATSWQD 536
Query: 401 VTGRLAHFRCLLNQRGI 417
R+ H R + GI
Sbjct: 537 AEYRMLHIRERFVRMGI 553
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 147/351 (41%), Gaps = 49/351 (13%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-G 143
RF +RG +D +RH+ P + I+ A KLNVLH H+ D Q + +I YPKL + G
Sbjct: 137 RFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRYPKLTETG 196
Query: 144 AYSTSER-----------------YTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKG 186
A+ YT D EIV++A R I V+ E+DVPGH+ +
Sbjct: 197 AWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQAAIAA 256
Query: 187 YPSLWPS-KDCQEPLDV------------SNEFTFKVIDGILSDFSKVFKYKFVHLGGDE 233
YP L D P++V +E + + +L + ++F ++ LGGDE
Sbjct: 257 YPELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFPSPWISLGGDE 316
Query: 234 VNTSCWTLTPHVSKWLKEHSMNE-SQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKL 292
V + W + E +++ S + +FV Q HG W+E + L
Sbjct: 317 VPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGRATSVWDEIGD---GGL 373
Query: 293 SPKTVVHNWLXXXXXXXXXXXXLRCIVSNQDKWYLDHLD-------------TTWEQFYM 339
+V +W + + K YLDH TT + Y
Sbjct: 374 PDGALVASWRGYEGGIDALRKGYDVVXCPEHKLYLDHRQADGDDEPVPVGFVTTLQAVYE 433
Query: 340 NEPLTNITKSEQQKLVIGGEVCMWGETVDAS-DIQQTIWPRAAAAAERLWT 389
EPL + ++ ++G + +W E +D+ +Q +PR +A +E W+
Sbjct: 434 FEPLPGVEGTDFPGRLLGAQANIWSEHLDSPRRVQFAAFPRLSAISEVFWS 484
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 140/331 (42%), Gaps = 46/331 (13%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-- 142
+ +RGL++D +RH+ + +K ID + K+N H H+ D Q + +EI S+P L +
Sbjct: 181 EYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIG 240
Query: 143 ----GAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQ- 197
YT +IVSYA +R I V+ E+D+PGH + Y L P +
Sbjct: 241 SKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNPDGKRKA 300
Query: 198 ---------EPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKW 248
L E T++ ++ ++S+ + + ++HLGGDE N +
Sbjct: 301 MRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDESNATS---------- 350
Query: 249 LKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWL-XXXXX 307
+ Y YF + IA +G ++V W+ + + G + +V+ NW
Sbjct: 351 --------AADYDYFFGRVTAIANSYGKKVVGWDPSDTSSG--ATSDSVLQNWTCSASTG 400
Query: 308 XXXXXXXLRCIVSNQD-----KWYLDH-LDTTWEQFYMNEPLTN--ITKSEQQKLVIGGE 359
++ IVS + K+Y D + W F N T + + G E
Sbjct: 401 TAAKAKGMKVIVSPANAYLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDCIKGANIYGVE 460
Query: 360 VCMWGETVDASD-IQQTIWPRAAAAAERLWT 389
+W ET D + ++P+ + AE WT
Sbjct: 461 STLWTETFVTQDHLDYMLYPKLLSNAEVGWT 491
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 146/353 (41%), Gaps = 60/353 (16%)
Query: 75 ASGILKDGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEI 134
A G ++D R+++R ++D SRH+ + +K ID +A K N LH H+ D Q + + I
Sbjct: 147 AGGTIED-TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAI 205
Query: 135 PSYPKLWDGAYST------SERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGY- 187
S+P+L ST YT A+ EIV YA R + V+ E+D+PGH + Y
Sbjct: 206 DSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYA 265
Query: 188 --------PSLWP-SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSC 238
P L+ +K L V + T+ +D ++ + + + +++H+GGDE ++
Sbjct: 266 ELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHS-- 323
Query: 239 WTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVV 298
TP + F+ + Q I +G +V W + G + +V
Sbjct: 324 ---TPKAD-------------FVAFMKRVQPIVAKYGKTVVGWHQL---AGAEPVEGALV 364
Query: 299 HNW-------LXXXXXXXXXXXXLRCIVSNQDKWYLDH-------LDTTWEQF------Y 338
W I+S D+ YLD L +W + Y
Sbjct: 365 QYWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSY 424
Query: 339 MNEPLTNITKSEQQKLVIGGEVCMWGETV-DASDIQQTIWPRAAAAAERLWTP 390
+P + + V G E +W ET+ D + +PR AE W+P
Sbjct: 425 DWDPAGYLPGAPADA-VRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 476
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 146/353 (41%), Gaps = 60/353 (16%)
Query: 75 ASGILKDGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEI 134
A G ++D R+++R ++D SRH+ + +K ID +A K N LH H+ D Q + + I
Sbjct: 147 AGGTIED-TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAI 205
Query: 135 PSYPKLWDGAYST------SERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGY- 187
S+P+L ST YT A+ EIV YA R + V+ E+D+PGH + Y
Sbjct: 206 DSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYA 265
Query: 188 --------PSLWP-SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSC 238
P L+ +K L V + T+ +D ++ + + + +++H+GG+E ++
Sbjct: 266 ELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEAHS-- 323
Query: 239 WTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVV 298
TP + F+ + Q I +G +V W + G + +V
Sbjct: 324 ---TPKAD-------------FVAFMKRVQPIVAKYGKTVVGWHQL---AGAEPVEGALV 364
Query: 299 HNW-------LXXXXXXXXXXXXLRCIVSNQDKWYLDH-------LDTTWEQF------Y 338
W I+S D+ YLD L +W + Y
Sbjct: 365 QYWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSY 424
Query: 339 MNEPLTNITKSEQQKLVIGGEVCMWGETV-DASDIQQTIWPRAAAAAERLWTP 390
+P + + V G E +W ET+ D + +PR AE W+P
Sbjct: 425 DWDPAGYLPGAPADA-VRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 476
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 60/353 (16%)
Query: 75 ASGILKDGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEI 134
A G ++D R+++R ++D SRH+ + +K ID +A K N LH H+ D Q + + I
Sbjct: 147 AGGTIED-TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAI 205
Query: 135 PSYPKLWDGAYST------SERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGY- 187
S+P+L ST YT A+ EIV YA R + V+ E+D+PGH + Y
Sbjct: 206 DSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYA 265
Query: 188 --------PSLWP-SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSC 238
P L+ +K L V + T+ +D ++ + + + +++H+GG E ++
Sbjct: 266 ELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEAHS-- 323
Query: 239 WTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVV 298
TP + F+ + Q I +G +V W + G + +V
Sbjct: 324 ---TPKAD-------------FVAFMKRVQPIVAKYGKTVVGWHQL---AGAEPVEGALV 364
Query: 299 HNW-------LXXXXXXXXXXXXLRCIVSNQDKWYLDH-------LDTTWEQF------Y 338
W I+S D+ YLD L +W + Y
Sbjct: 365 QYWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSY 424
Query: 339 MNEPLTNITKSEQQKLVIGGEVCMWGETV-DASDIQQTIWPRAAAAAERLWTP 390
+P + + V G E +W ET+ D + +PR AE W+P
Sbjct: 425 DWDPAGYLPGAPADA-VRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 476
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 55/207 (26%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-- 142
RF +RG+ +D +R++ + ++D MA KLN H+H+ D + + +EIP P+L +
Sbjct: 310 RFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVG 369
Query: 143 --GAYSTSER-----------------YTMADAAEIVSYAQKRGINVLAELDVPGHA--- 180
+ SE ++ D +I+ YAQ R I V+ E+D+P HA
Sbjct: 370 GQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAA 429
Query: 181 -LSWGKGYPSLWPSKDCQE--------PLDVSN-----------------EFTFKVIDGI 214
+S Y L + QE P D SN + + + +D +
Sbjct: 430 VVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKV 489
Query: 215 LSDFSKVFK-----YKFVHLGGDEVNT 236
+ + +++ K K H GGDE
Sbjct: 490 IGEIAQMHKEAGQPIKTWHFGGDEAKN 516
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 21/117 (17%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-- 142
RF +RG+ +D +R++ + ++D MA KLN H+H+ D + + +EIP P+L +
Sbjct: 310 RFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVG 369
Query: 143 --GAYSTSER-----------------YTMADAAEIVSYAQKRGINVLAELDVPGHA 180
+ SE ++ D +I+ YAQ R I V+ E+D+P HA
Sbjct: 370 GQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 21/117 (17%)
Query: 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-- 142
RF +RG+ +D +R++ + ++D MA KLN H+H+ D + + +EIP P+L +
Sbjct: 310 RFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVG 369
Query: 143 --GAYSTSER-----------------YTMADAAEIVSYAQKRGINVLAELDVPGHA 180
+ SE ++ D +I+ YAQ R I V+ E+D+P HA
Sbjct: 370 GQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 90 GLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLE-----------IPSYP 138
GL++D +RH+ +IK+ ID+++ + N LH H D +++ +E +
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 139 KLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALS--------WGKGYPSL 190
++ Y+ + +I +YA+ +GI ++ ELD P H + G Y
Sbjct: 80 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQG 139
Query: 191 WPSKDCQEPLDVSNEFTFKVIDGILSDFSKVF--KYKFVHLGGDEVNTSC 238
S+ + +D++N + + ++S+ +F + H+GGDE S
Sbjct: 140 LKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSV 189
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 113/306 (36%), Gaps = 54/306 (17%)
Query: 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL--------WPSKDCQEPLDVS 203
T + ++++YA+ +GI ++ ++ PGH + L + K +D+
Sbjct: 110 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQNPNFSYFGKKSARTVDLD 169
Query: 204 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 256
NE FT +ID + F+K +F D + W++ K+
Sbjct: 170 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAKGWSVL-QADKYYPNEGY-P 227
Query: 257 SQAYQYFVLQAQKIALL---HGYEIV--------NWEETFNNFGNKLSPKTVVHNWLXXX 305
+ Y+ F+ A +A + HG + + N + +F +F + +V W
Sbjct: 228 VKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGSFDKDI----IVSMWTGGW 283
Query: 306 XXXXXXXXXLRC-----IVSNQDKWYLD-----------HLDTTWEQFYMNEPLTNITKS 349
L I++ D WY +LD N P+T++ K+
Sbjct: 284 GGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLDQGLNGI-KNTPITSVPKT 342
Query: 350 EQQKL-VIGGEVCMWGETVDA----SDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGR 404
E + +IGG V W +T A S + + + A A AE Y+ + +V
Sbjct: 343 EGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANANAEYFAADYESAEQALNEVPKD 402
Query: 405 LAHFRC 410
L +
Sbjct: 403 LNRYTA 408
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 113/306 (36%), Gaps = 54/306 (17%)
Query: 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL--------WPSKDCQEPLDVS 203
T + ++++YA+ +GI ++ ++ PGH + L + K +D+
Sbjct: 90 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQNPNFSYFGKKSARTVDLD 149
Query: 204 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 256
NE FT +ID + F+K +F D + W++ K+
Sbjct: 150 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDQYANDATDAKGWSVL-QADKYYPNEGY-P 207
Query: 257 SQAYQYFVLQAQKIALL---HGYEIV--------NWEETFNNFGNKLSPKTVVHNWLXXX 305
+ Y+ F+ A +A + HG + + N + +F +F + +V W
Sbjct: 208 VKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGSFDKDI----IVSMWTGGW 263
Query: 306 XXXXXXXXXLRC-----IVSNQDKWYLD-----------HLDTTWEQFYMNEPLTNITKS 349
L I++ D WY +LD N P+T++ K+
Sbjct: 264 GGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLDQGLNGI-KNTPITSVPKT 322
Query: 350 EQQKL-VIGGEVCMWGETVDA----SDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGR 404
E + +IGG V W +T A S + + + A A AE Y+ + +V
Sbjct: 323 EGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANANAEYFAADYESAEQALNEVPKD 382
Query: 405 LAHFRC 410
L +
Sbjct: 383 LNRYTA 388
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 113/306 (36%), Gaps = 54/306 (17%)
Query: 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL--------WPSKDCQEPLDVS 203
T + ++++YA+ +GI ++ ++ PGH + L + K +D+
Sbjct: 90 TESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQNPNFSYFGKKSARTVDLD 149
Query: 204 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 256
NE FT +ID + F+K +F D + W++ K+
Sbjct: 150 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAKGWSVL-QADKYYPNEGY-P 207
Query: 257 SQAYQYFVLQAQKIALL---HGYEIV--------NWEETFNNFGNKLSPKTVVHNWLXXX 305
+ Y+ F+ A +A + HG + + N + +F +F + +V W
Sbjct: 208 VKGYEKFIAYANDLARIVKSHGLKPMAFNDGIYYNSDTSFGSFDKDI----IVSMWTGGW 263
Query: 306 XXXXXXXXXLRC-----IVSNQDKWYLD-----------HLDTTWEQFYMNEPLTNITKS 349
L I++ D WY +LD N P+T++ K+
Sbjct: 264 GGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADGQGWYNLDQGLNGI-KNTPITSVPKT 322
Query: 350 EQQKL-VIGGEVCMWGETVDA----SDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGR 404
E + +IGG V W +T A S + + + A A AE Y+ + +V
Sbjct: 323 EGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFANANAEYFAADYESAEQALNEVPKD 382
Query: 405 LAHFRC 410
L +
Sbjct: 383 LNRYTA 388
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 152 TMADAAEIVSYAQKRGINVLAELDVPGHALS-------WGKGYPSL-WPSKDCQEPLDVS 203
T + ++++YA+ +GI ++ ++ PGH + G P+ + K +D+
Sbjct: 95 TESQXTDLINYAKDKGIGLIPTVNSPGHXDAILNAXKELGIQNPNFSYFGKKSARTVDLD 154
Query: 204 NE----FTFKVIDGILSDFSK---VFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 256
NE FT +ID + F+K +F D + W++ K+
Sbjct: 155 NEQAVAFTKALIDKYAAYFAKKTEIFNIGLDEYANDATDAKGWSVL-QADKYYPNEGY-P 212
Query: 257 SQAYQYFVLQAQKIALL---HGYE--------IVNWEETFNNFGNKLSPKTVVHNWLXXX 305
+ Y+ F+ A +A + HG + N + +F +F + +V W
Sbjct: 213 VKGYEKFIAYANDLARIVKSHGLKPXAFNDGIYYNSDTSFGSFDKDI----IVSXWTGGW 268
Query: 306 XXXXXXXXXLRC-----IVSNQDKW-YLDHLDTTWEQFY---------MNEPLTNITKSE 350
L I++ D W Y+ + + +Y N P+T++ K+E
Sbjct: 269 GGYDVASSKLLAEKGHQILNTNDAWCYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTE 328
Query: 351 QQKL-VIGGEVCMWGETVDA 369
+ +IGG V W +T A
Sbjct: 329 GADIPIIGGXVAAWADTPSA 348
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSW-------GKGYPSLWPSKDCQEPLDVSN 204
T A+ E++ YA+ + I ++ ++ PGH + G P K + +D+ N
Sbjct: 93 TQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKN 152
Query: 205 EFTFKVIDGILSDFSKVF--KYKFVHLGGDE 233
E + ++ + F K K + G DE
Sbjct: 153 EEAMNFVKALIGKYMDFFAGKTKIFNFGTDE 183
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSW-------GKGYPSLWPSKDCQEPLDVSN 204
T A+ E++ YA+ + I ++ ++ PGH + G P K + +D+ N
Sbjct: 110 TQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKN 169
Query: 205 EFTFKVIDGILSDFSKVF--KYKFVHLGGDE 233
E + ++ + F K K + G D+
Sbjct: 170 EEAMNFVKALIGKYMDFFAGKTKIFNFGTDQ 200
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSW-------GKGYPSLWPSKDCQEPLDVSN 204
T A+ E++ YA+ + I ++ ++ PGH + G P K + +D+ N
Sbjct: 93 TQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKN 152
Query: 205 EFTFKVIDGILSDFSKVF--KYKFVHLGGDE 233
E + ++ + F K K + G D+
Sbjct: 153 EEAMNFVKALIGKYMDFFAGKTKIFNFGTDQ 183
>pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|C Chain C, Methylmalonyl-Coa Mutase H244a Mutant
Length = 727
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 68 QGSKYKDASGILK-DGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVD 126
QG K + +G ++ D F R I Y P P ++ + + AY N+ W+
Sbjct: 184 QGVKPEQLAGTIQNDILKEFMVRNTYI-----YPPQPSMRIISEIFAYTSANMPKWN--- 235
Query: 127 TQSFPLEIPSYPKLWDGAYSTSE-RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGK 185
+ I Y GA + E YT+AD + + + G+NV + P + WG
Sbjct: 236 ----SISISGYAMQEAGATADIEMAYTLADGVDYIRAGESVGLNV--DQFAPRLSFFWGI 289
Query: 186 G 186
G
Sbjct: 290 G 290
>pdb|1NQ6|A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A
From Streptomyces Halstedii Jm8
Length = 302
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 99 YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAE 158
Y + N + AYA +D Q F P WD S+ ++ + A
Sbjct: 14 YFGAAVAANHLGEAAYAS-------TLDAQ-FGSVTPENEMKWDAVESSRNSFSFSAADR 65
Query: 159 IVSYAQKRGINVLAELDVPGHALSWGKGYP 188
IVS+AQ +G + V GH L W P
Sbjct: 66 IVSHAQSKG------MKVRGHTLVWHSQLP 89
>pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|C Chain C, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
Length = 727
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 68 QGSKYKDASGILK-DGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVD 126
QG K + +G ++ D F R I Y P P ++ + + AY N+ W+
Sbjct: 184 QGVKPEQLAGTIQNDILKEFMVRNTYI-----YPPQPSMRIISEIFAYTSANMPKWN--- 235
Query: 127 TQSFPLEIPSYPKLWDGAYSTSE-RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGK 185
+ I Y GA + E YT+AD + + + G+NV + P + WG
Sbjct: 236 ----SISISGYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNV--DQFAPRLSFFWGI 289
Query: 186 G 186
G
Sbjct: 290 G 290
>pdb|1REQ|A Chain A, Methylmalonyl-Coa Mutase
pdb|1REQ|C Chain C, Methylmalonyl-Coa Mutase
pdb|2REQ|A Chain A, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|C Chain C, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|A Chain A, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|C Chain C, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|A Chain A, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|C Chain C, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|A Chain A, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|C Chain C, Methylmalonyl-Coa Mutase Substrate Complex
Length = 727
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 68 QGSKYKDASGILK-DGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVD 126
QG K + +G ++ D F R I Y P P ++ + + AY N+ W+
Sbjct: 184 QGVKPEQLAGTIQNDILKEFMVRNTYI-----YPPQPSMRIISEIFAYTSANMPKWN--- 235
Query: 127 TQSFPLEIPSYPKLWDGAYSTSE-RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGK 185
+ I Y GA + E YT+AD + + + G+NV + P + WG
Sbjct: 236 ----SISISGYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNV--DQFAPRLSFFWGI 289
Query: 186 G 186
G
Sbjct: 290 G 290
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 267 AQKIALLHGYEIVNWEETFNNFGNKLSPKT 296
A K+A+++G +V + TF F N L P T
Sbjct: 222 ADKVAVIYGGNLVEYNSTFQIFKNPLHPYT 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,319,534
Number of Sequences: 62578
Number of extensions: 542494
Number of successful extensions: 1031
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 40
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)