Query 013337
Match_columns 445
No_of_seqs 251 out of 1530
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499 Beta-N-acetylhexosamin 100.0 3.7E-95 8E-100 734.3 31.6 352 81-443 176-542 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 2E-91 4.4E-96 711.8 34.9 329 86-416 1-348 (348)
3 cd06563 GH20_chitobiase-like T 100.0 7.6E-88 1.6E-92 688.1 33.4 315 86-405 1-357 (357)
4 cd06570 GH20_chitobiase-like_1 100.0 2.1E-87 4.5E-92 671.3 32.9 299 86-405 1-311 (311)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 2.6E-84 5.5E-89 676.9 33.7 312 82-393 1-420 (445)
6 cd06568 GH20_SpHex_like A subg 100.0 1E-82 2.2E-87 642.8 32.5 296 86-405 1-329 (329)
7 PF00728 Glyco_hydro_20: Glyco 100.0 3.5E-79 7.6E-84 620.8 19.4 306 86-391 1-351 (351)
8 cd02742 GH20_hexosaminidase Be 100.0 5E-77 1.1E-81 596.0 30.1 284 88-389 1-303 (303)
9 cd06564 GH20_DspB_LnbB-like Gl 100.0 3.7E-73 8.1E-78 573.5 28.4 286 87-390 1-326 (326)
10 COG3525 Chb N-acetyl-beta-hexo 100.0 1.5E-65 3.3E-70 535.1 22.3 370 51-422 204-645 (732)
11 cd06565 GH20_GcnA-like Glycosy 100.0 1.1E-54 2.4E-59 434.2 23.5 280 88-389 1-301 (301)
12 PF02638 DUF187: Glycosyl hydr 97.5 0.009 1.9E-07 60.5 18.6 184 87-275 1-220 (311)
13 PF13200 DUF4015: Putative gly 96.8 0.027 5.8E-07 57.2 14.1 162 102-278 12-190 (316)
14 PF14871 GHL6: Hypothetical gl 95.1 0.23 5E-06 44.1 10.1 109 106-223 3-124 (132)
15 PF10566 Glyco_hydro_97: Glyco 94.9 0.069 1.5E-06 53.1 7.1 113 98-220 27-148 (273)
16 COG1649 Uncharacterized protei 94.5 2.3 4.9E-05 44.8 17.3 136 85-223 44-199 (418)
17 PF02449 Glyco_hydro_42: Beta- 94.2 0.35 7.6E-06 50.0 10.5 109 101-224 8-125 (374)
18 PF00150 Cellulase: Cellulase 92.5 1.3 2.9E-05 42.8 11.0 155 86-277 8-165 (281)
19 PF14845 Glycohydro_20b2: beta 89.2 0.11 2.4E-06 45.3 -0.0 45 43-87 1-46 (128)
20 PRK12313 glycogen branching en 86.9 5.7 0.00012 44.2 11.5 114 100-221 167-300 (633)
21 TIGR02402 trehalose_TreZ malto 86.9 5.8 0.00013 43.4 11.4 111 102-220 110-234 (542)
22 TIGR01515 branching_enzym alph 86.0 5.9 0.00013 44.0 11.0 110 105-222 159-287 (613)
23 smart00642 Aamy Alpha-amylase 85.7 3.7 7.9E-05 37.7 7.8 74 101-182 17-97 (166)
24 PRK12568 glycogen branching en 84.6 9.1 0.0002 43.3 11.6 116 99-222 265-400 (730)
25 PLN02447 1,4-alpha-glucan-bran 82.4 44 0.00094 38.2 15.8 163 105-285 253-447 (758)
26 PRK05402 glycogen branching en 82.2 9.6 0.00021 43.2 10.8 116 99-221 261-395 (726)
27 TIGR02403 trehalose_treC alpha 81.3 6 0.00013 43.2 8.5 70 101-181 25-101 (543)
28 TIGR02100 glgX_debranch glycog 81.2 8.7 0.00019 43.3 9.9 70 152-222 243-333 (688)
29 PLN02960 alpha-amylase 80.7 12 0.00027 43.0 10.8 115 99-221 412-547 (897)
30 PRK14705 glycogen branching en 80.6 12 0.00027 44.7 11.1 110 105-222 768-896 (1224)
31 PRK14582 pgaB outer membrane N 80.5 1.1E+02 0.0023 34.6 18.8 181 85-273 311-527 (671)
32 PRK14706 glycogen branching en 80.0 14 0.0003 41.4 10.9 114 99-222 163-298 (639)
33 PF13199 Glyco_hydro_66: Glyco 79.6 7.1 0.00015 42.8 8.3 185 79-284 95-309 (559)
34 COG0296 GlgB 1,4-alpha-glucan 79.2 6.8 0.00015 43.5 8.0 121 91-221 150-294 (628)
35 PRK03705 glycogen debranching 78.7 13 0.00029 41.6 10.3 108 108-222 184-328 (658)
36 cd06593 GH31_xylosidase_YicI Y 74.1 34 0.00075 34.2 11.0 111 98-220 19-147 (308)
37 cd06598 GH31_transferase_CtsZ 73.5 25 0.00055 35.5 10.0 127 84-220 7-152 (317)
38 PRK14510 putative bifunctional 72.9 23 0.00049 42.7 10.7 110 107-220 191-333 (1221)
39 PRK09441 cytoplasmic alpha-amy 72.5 18 0.00039 38.8 9.0 71 102-181 21-107 (479)
40 PLN02784 alpha-amylase 72.3 20 0.00043 41.3 9.4 74 102-182 520-595 (894)
41 KOG0259 Tyrosine aminotransfer 71.9 6.3 0.00014 41.0 5.0 112 69-181 96-245 (447)
42 TIGR02104 pulA_typeI pullulana 71.5 34 0.00073 38.0 11.1 116 104-221 165-310 (605)
43 PLN02361 alpha-amylase 69.6 17 0.00037 38.3 7.9 72 102-180 28-101 (401)
44 PF07555 NAGidase: beta-N-acet 67.5 18 0.00039 36.7 7.3 162 100-304 12-190 (306)
45 TIGR02102 pullulan_Gpos pullul 67.3 86 0.0019 37.5 13.6 69 153-222 554-634 (1111)
46 KOG0470 1,4-alpha-glucan branc 67.2 19 0.00041 40.5 7.7 107 105-220 257-392 (757)
47 PRK10785 maltodextrin glucosid 67.0 22 0.00047 39.4 8.4 78 97-181 171-252 (598)
48 PF00128 Alpha-amylase: Alpha 67.0 9 0.00019 37.2 4.9 69 102-181 3-78 (316)
49 PF01055 Glyco_hydro_31: Glyco 66.0 69 0.0015 33.7 11.7 135 83-231 25-178 (441)
50 COG1874 LacA Beta-galactosidas 65.9 1.1E+02 0.0024 34.5 13.5 137 101-252 28-182 (673)
51 TIGR02401 trehalose_TreY malto 64.8 28 0.0006 40.1 8.7 76 99-181 12-91 (825)
52 PRK14511 maltooligosyl trehalo 64.8 27 0.00058 40.4 8.7 76 99-181 16-95 (879)
53 PF02065 Melibiase: Melibiase; 64.6 35 0.00076 35.9 9.0 121 100-229 55-189 (394)
54 cd06592 GH31_glucosidase_KIAA1 64.1 47 0.001 33.4 9.5 109 98-219 25-151 (303)
55 TIGR02456 treS_nterm trehalose 63.5 29 0.00064 37.8 8.5 69 101-181 26-102 (539)
56 cd00452 KDPG_aldolase KDPG and 62.8 13 0.00027 34.7 4.8 121 101-232 14-152 (190)
57 PRK10933 trehalose-6-phosphate 62.8 28 0.00061 38.2 8.2 70 101-181 31-107 (551)
58 PF01212 Beta_elim_lyase: Beta 62.6 31 0.00067 34.6 7.9 71 87-172 92-163 (290)
59 cd00019 AP2Ec AP endonuclease 61.9 12 0.00026 36.7 4.7 61 101-174 83-143 (279)
60 PF01261 AP_endonuc_2: Xylose 59.8 33 0.00072 31.1 7.1 63 102-174 70-132 (213)
61 PF13204 DUF4038: Protein of u 59.2 71 0.0015 31.9 9.8 118 101-233 28-156 (289)
62 PRK05301 pyrroloquinoline quin 57.3 28 0.00061 35.9 6.8 58 97-179 43-100 (378)
63 TIGR01182 eda Entner-Doudoroff 57.1 56 0.0012 31.2 8.2 82 101-185 18-119 (204)
64 TIGR02109 PQQ_syn_pqqE coenzym 56.9 25 0.00054 35.9 6.2 59 97-180 34-92 (358)
65 PLN00196 alpha-amylase; Provis 56.3 51 0.0011 35.1 8.5 74 102-182 43-119 (428)
66 PRK06552 keto-hydroxyglutarate 55.7 45 0.00097 32.0 7.3 119 101-233 23-165 (213)
67 TIGR03234 OH-pyruv-isom hydrox 55.4 8.8 0.00019 37.0 2.5 77 86-174 67-143 (254)
68 TIGR02455 TreS_stutzeri trehal 55.3 33 0.00071 38.4 7.0 69 107-181 78-156 (688)
69 PRK06015 keto-hydroxyglutarate 54.4 84 0.0018 29.9 8.9 81 101-184 14-114 (201)
70 PRK13210 putative L-xylulose 5 54.3 1.6E+02 0.0034 28.6 11.2 135 103-280 16-151 (284)
71 cd06600 GH31_MGAM-like This fa 53.3 1.2E+02 0.0025 30.8 10.3 108 99-219 20-146 (317)
72 PF03198 Glyco_hydro_72: Gluca 52.6 2E+02 0.0043 29.4 11.5 128 102-281 52-181 (314)
73 COG0134 TrpC Indole-3-glycerol 51.1 33 0.00071 33.9 5.6 74 150-230 139-212 (254)
74 PRK01060 endonuclease IV; Prov 50.5 72 0.0016 31.1 8.1 59 90-170 5-63 (281)
75 TIGR01866 cas_Csn2 CRISPR-asso 48.9 40 0.00086 32.5 5.7 66 85-172 131-196 (216)
76 CHL00130 rbcS ribulose-1,5-bis 48.1 85 0.0018 28.1 7.1 79 143-231 6-84 (138)
77 PF14701 hDGE_amylase: glucano 48.1 1.4E+02 0.0031 31.7 10.2 89 101-192 20-117 (423)
78 PF02838 Glyco_hydro_20b: Glyc 47.8 13 0.00027 31.8 2.0 29 41-69 2-30 (124)
79 PRK13957 indole-3-glycerol-pho 47.4 32 0.00069 33.9 4.9 129 84-227 71-204 (247)
80 PLN03244 alpha-amylase; Provis 46.1 45 0.00097 38.2 6.3 72 150-222 437-523 (872)
81 PF05913 DUF871: Bacterial pro 46.1 53 0.0011 34.1 6.5 55 101-175 12-68 (357)
82 PRK14507 putative bifunctional 45.9 63 0.0014 40.2 8.0 73 99-181 754-833 (1693)
83 PTZ00372 endonuclease 4-like p 45.4 38 0.00083 35.9 5.4 81 87-174 301-391 (413)
84 PRK10658 putative alpha-glucos 45.4 1.9E+02 0.0042 32.6 11.3 126 84-221 264-407 (665)
85 cd06591 GH31_xylosidase_XylS X 45.1 1.9E+02 0.0041 29.2 10.4 110 98-217 19-143 (319)
86 cd06602 GH31_MGAM_SI_GAA This 45.1 3.6E+02 0.0077 27.6 13.3 106 98-220 19-152 (339)
87 PRK10076 pyruvate formate lyas 44.3 1E+02 0.0022 29.5 7.8 66 101-171 143-210 (213)
88 PRK02308 uvsE putative UV dama 43.8 3.6E+02 0.0078 27.2 12.5 63 149-231 86-156 (303)
89 PRK00278 trpC indole-3-glycero 43.7 1.2E+02 0.0026 29.8 8.5 40 151-190 144-183 (260)
90 PF01301 Glyco_hydro_35: Glyco 43.3 59 0.0013 33.1 6.3 70 100-181 21-90 (319)
91 PLN02877 alpha-amylase/limit d 43.3 2.3E+02 0.005 33.5 11.6 28 153-181 465-492 (970)
92 cd06594 GH31_glucosidase_YihQ 43.2 84 0.0018 31.8 7.4 125 83-218 6-151 (317)
93 PLN00145 tyrosine/nicotianamin 42.3 34 0.00074 36.0 4.6 26 147-172 203-228 (430)
94 COG0436 Aspartate/tyrosine/aro 42.3 38 0.00082 35.4 4.9 26 148-173 177-202 (393)
95 COG1168 MalY Bifunctional PLP- 42.0 26 0.00057 36.5 3.5 28 147-174 171-199 (388)
96 PRK09856 fructoselysine 3-epim 41.5 88 0.0019 30.3 7.1 62 101-174 88-149 (275)
97 PRK05718 keto-hydroxyglutarate 40.2 63 0.0014 31.0 5.7 82 100-184 24-125 (212)
98 PLN03059 beta-galactosidase; P 40.0 5.4E+02 0.012 30.0 13.7 63 100-174 56-118 (840)
99 smart00518 AP2Ec AP endonuclea 39.8 1.3E+02 0.0027 29.2 7.9 60 90-171 3-62 (273)
100 KOG0256 1-aminocyclopropane-1- 39.7 1.7E+02 0.0036 31.2 8.9 67 91-173 198-265 (471)
101 PF02679 ComA: (2R)-phospho-3- 39.2 66 0.0014 31.6 5.7 26 150-175 109-134 (244)
102 COG0084 TatD Mg-dependent DNas 38.4 4E+02 0.0087 26.3 12.7 150 153-320 16-177 (256)
103 TIGR01531 glyc_debranch glycog 38.3 1E+02 0.0022 37.7 7.9 78 101-190 130-223 (1464)
104 PRK13384 delta-aminolevulinic 37.8 4.7E+02 0.01 26.8 12.1 138 102-256 16-188 (322)
105 PF01565 FAD_binding_4: FAD bi 37.4 38 0.00082 29.3 3.4 27 152-180 9-35 (139)
106 PRK09147 succinyldiaminopimela 37.4 45 0.00097 34.3 4.5 26 147-172 179-204 (396)
107 COG1313 PflX Uncharacterized F 37.4 64 0.0014 32.7 5.2 71 90-172 257-333 (335)
108 PRK09276 LL-diaminopimelate am 37.3 55 0.0012 33.4 5.1 26 147-172 179-204 (385)
109 COG0366 AmyA Glycosidases [Car 37.3 1.2E+02 0.0025 32.0 7.7 68 102-181 28-103 (505)
110 PLN02376 1-aminocyclopropane-1 37.2 59 0.0013 35.1 5.5 25 148-172 213-237 (496)
111 cd07201 cPLA2_Grp-IVB-IVD-IVE- 37.0 40 0.00086 36.8 4.1 52 121-176 372-432 (541)
112 PF07745 Glyco_hydro_53: Glyco 36.3 5E+02 0.011 26.7 12.1 130 106-273 27-165 (332)
113 COG0113 HemB Delta-aminolevuli 36.1 3.2E+02 0.007 27.9 9.9 70 101-179 15-86 (330)
114 TIGR00542 hxl6Piso_put hexulos 35.9 53 0.0011 32.1 4.6 61 102-174 93-153 (279)
115 KOG0462 Elongation factor-type 35.8 26 0.00056 38.3 2.4 33 152-184 92-140 (650)
116 COG2100 Predicted Fe-S oxidore 35.5 1E+02 0.0022 31.8 6.4 51 95-167 234-284 (414)
117 smart00633 Glyco_10 Glycosyl h 35.0 71 0.0015 31.1 5.2 65 147-225 9-73 (254)
118 PLN02607 1-aminocyclopropane-1 35.0 2.9E+02 0.0063 29.3 10.3 63 94-172 175-238 (447)
119 TIGR02668 moaA_archaeal probab 34.8 87 0.0019 31.1 6.0 59 97-180 37-96 (302)
120 cd06603 GH31_GANC_GANAB_alpha 34.5 3.7E+02 0.008 27.3 10.6 109 98-220 19-147 (339)
121 TIGR03542 DAPAT_plant LL-diami 34.3 1.1E+02 0.0024 31.5 6.9 26 147-172 186-211 (402)
122 PRK09283 delta-aminolevulinic 34.2 5.3E+02 0.012 26.5 12.0 138 103-256 15-186 (323)
123 PF00218 IGPS: Indole-3-glycer 34.1 42 0.00092 33.1 3.5 42 149-190 140-181 (254)
124 PLN00143 tyrosine/nicotianamin 34.0 59 0.0013 33.8 4.8 25 148-172 184-208 (409)
125 cd06597 GH31_transferase_CtsY 33.6 4.3E+02 0.0094 27.0 10.9 118 98-219 19-173 (340)
126 cd02874 GH18_CFLE_spore_hydrol 33.3 3.3E+02 0.0071 27.1 9.9 91 156-278 47-140 (313)
127 PLN02450 1-aminocyclopropane-1 33.2 56 0.0012 34.9 4.5 25 148-172 205-229 (468)
128 cd02875 GH18_chitobiase Chitob 33.2 1.9E+02 0.004 29.9 8.2 82 157-275 67-149 (358)
129 PTZ00377 alanine aminotransfer 33.2 61 0.0013 34.6 4.8 26 147-172 231-256 (481)
130 PLN02368 alanine transaminase 33.2 54 0.0012 34.4 4.3 26 147-172 223-248 (407)
131 cd06599 GH31_glycosidase_Aec37 33.1 4.7E+02 0.01 26.3 11.0 109 102-219 28-154 (317)
132 TIGR03537 DapC succinyldiamino 33.1 48 0.001 33.4 3.9 25 148-172 150-174 (350)
133 COG1217 TypA Predicted membran 32.6 22 0.00047 38.3 1.2 24 161-184 47-83 (603)
134 cd06604 GH31_glucosidase_II_Ma 31.9 4.6E+02 0.01 26.6 10.8 110 98-220 19-147 (339)
135 TIGR03849 arch_ComA phosphosul 31.7 1.5E+02 0.0032 29.1 6.7 52 103-176 71-122 (237)
136 COG3977 Alanine-alpha-ketoisov 31.7 56 0.0012 33.4 3.8 27 147-173 192-218 (417)
137 PRK06348 aspartate aminotransf 31.7 60 0.0013 33.3 4.3 25 148-172 176-200 (384)
138 cd00384 ALAD_PBGS Porphobilino 31.1 5.9E+02 0.013 26.0 12.2 119 121-256 26-178 (314)
139 PRK09265 aminotransferase AlaT 30.3 76 0.0016 32.8 4.9 25 148-172 182-206 (404)
140 COG1820 NagA N-acetylglucosami 30.2 55 0.0012 34.3 3.6 83 80-175 80-173 (380)
141 TIGR03538 DapC_gpp succinyldia 29.9 60 0.0013 33.4 4.0 25 148-172 179-203 (393)
142 PRK09427 bifunctional indole-3 29.8 88 0.0019 33.6 5.3 42 149-190 141-182 (454)
143 PRK07337 aminotransferase; Val 29.7 81 0.0018 32.3 4.9 27 147-173 176-202 (388)
144 PLN02231 alanine transaminase 29.5 80 0.0017 34.5 5.0 26 147-172 284-309 (534)
145 PLN02656 tyrosine transaminase 29.2 76 0.0016 32.9 4.6 24 148-171 183-206 (409)
146 PRK07590 L,L-diaminopimelate a 29.2 1.6E+02 0.0034 30.5 7.0 26 147-172 189-214 (409)
147 cd01299 Met_dep_hydrolase_A Me 29.2 3.8E+02 0.0083 26.6 9.6 67 101-178 118-184 (342)
148 PLN02951 Molybderin biosynthes 29.0 1.6E+02 0.0034 30.7 6.9 60 97-180 87-147 (373)
149 COG0402 SsnA Cytosine deaminas 28.9 1.9E+02 0.004 30.3 7.5 153 152-328 127-284 (421)
150 PTZ00372 endonuclease 4-like p 28.7 3.4E+02 0.0074 28.8 9.3 63 88-172 132-194 (413)
151 PRK07114 keto-hydroxyglutarate 28.7 1.5E+02 0.0032 28.7 6.1 83 100-185 24-130 (222)
152 COG5587 Uncharacterized conser 28.2 82 0.0018 29.6 4.0 51 224-278 104-156 (228)
153 PRK07366 succinyldiaminopimela 28.2 81 0.0017 32.3 4.6 25 147-171 178-202 (388)
154 TIGR01285 nifN nitrogenase mol 28.1 4.2E+02 0.0091 28.1 10.0 60 102-183 76-141 (432)
155 PRK02227 hypothetical protein; 27.8 73 0.0016 31.2 3.9 34 85-118 142-182 (238)
156 COG2355 Zn-dependent dipeptida 27.8 5.2E+02 0.011 26.4 10.1 132 105-259 151-295 (313)
157 PF13394 Fer4_14: 4Fe-4S singl 27.7 77 0.0017 26.5 3.7 64 98-181 27-92 (119)
158 PLN02187 rooty/superroot1 27.5 92 0.002 33.2 5.0 26 147-172 217-242 (462)
159 TIGR03540 DapC_direct LL-diami 27.2 94 0.002 31.7 4.9 25 147-171 177-201 (383)
160 COG3693 XynA Beta-1,4-xylanase 26.9 68 0.0015 32.9 3.6 66 147-224 75-140 (345)
161 PRK08636 aspartate aminotransf 26.9 1.7E+02 0.0037 30.2 6.7 25 147-171 188-212 (403)
162 TIGR03569 NeuB_NnaB N-acetylne 26.7 1.1E+02 0.0024 31.4 5.1 85 95-183 7-105 (329)
163 PF03102 NeuB: NeuB family; I 26.5 62 0.0013 31.7 3.1 24 150-173 52-75 (241)
164 PRK01060 endonuclease IV; Prov 26.4 1.4E+02 0.0031 29.0 5.8 83 89-177 174-263 (281)
165 PRK13355 bifunctional HTH-doma 26.3 94 0.002 33.5 4.9 25 148-172 295-319 (517)
166 PLN02460 indole-3-glycerol-pho 26.2 1.3E+02 0.0027 31.1 5.4 42 149-190 212-254 (338)
167 PRK07681 aspartate aminotransf 26.2 99 0.0021 31.9 4.8 25 147-171 179-203 (399)
168 smart00481 POLIIIAc DNA polyme 26.1 2.1E+02 0.0046 21.3 5.6 48 103-175 15-62 (67)
169 TIGR03586 PseI pseudaminic aci 25.9 3.3E+02 0.0072 27.9 8.4 85 95-183 8-106 (327)
170 PRK09989 hypothetical protein; 25.7 1.5E+02 0.0032 28.6 5.7 80 87-185 171-252 (258)
171 cd06601 GH31_lyase_GLase GLase 25.5 5.8E+02 0.013 26.0 10.2 101 99-219 20-120 (332)
172 TIGR00542 hxl6Piso_put hexulos 25.5 6.2E+02 0.014 24.5 14.2 132 103-280 16-151 (279)
173 PRK10340 ebgA cryptic beta-D-g 25.3 4.2E+02 0.009 31.6 10.2 53 100-180 352-404 (1021)
174 PRK11145 pflA pyruvate formate 25.2 89 0.0019 30.0 4.0 23 149-171 223-245 (246)
175 smart00518 AP2Ec AP endonuclea 25.1 2.8E+02 0.0061 26.7 7.6 85 87-176 166-258 (273)
176 PRK09505 malS alpha-amylase; R 25.0 69 0.0015 36.2 3.6 79 102-181 229-318 (683)
177 PRK13802 bifunctional indole-3 24.9 1.2E+02 0.0026 34.4 5.4 42 149-190 142-183 (695)
178 PRK13209 L-xylulose 5-phosphat 24.8 95 0.0021 30.2 4.2 61 102-174 98-158 (283)
179 PRK05764 aspartate aminotransf 24.7 1E+02 0.0022 31.5 4.6 25 148-172 178-202 (393)
180 cd06589 GH31 The enzymes of gl 24.7 2.3E+02 0.0049 27.7 6.8 68 99-176 20-88 (265)
181 PRK09997 hydroxypyruvate isome 24.5 96 0.0021 29.9 4.1 74 87-174 69-144 (258)
182 PRK14335 (dimethylallyl)adenos 24.5 1.1E+02 0.0025 32.5 5.0 25 149-173 288-314 (455)
183 PRK08960 hypothetical protein; 24.3 1E+02 0.0023 31.5 4.6 26 147-172 178-203 (387)
184 PRK09257 aromatic amino acid a 24.2 1.1E+02 0.0024 31.5 4.7 25 148-172 186-210 (396)
185 PF14542 Acetyltransf_CG: GCN5 24.1 76 0.0016 25.2 2.7 39 149-190 37-75 (78)
186 PRK07324 transaminase; Validat 24.0 1.2E+02 0.0026 31.0 4.9 26 148-173 167-192 (373)
187 PF09183 DUF1947: Domain of un 23.9 47 0.001 25.9 1.4 23 148-170 2-25 (65)
188 PF11080 DUF2622: Protein of u 23.7 1.7E+02 0.0036 24.7 4.7 66 102-176 20-85 (96)
189 PF14883 GHL13: Hypothetical g 23.5 7.8E+02 0.017 24.9 16.0 154 104-274 18-183 (294)
190 KOG0464 Elongation factor G [T 23.5 61 0.0013 34.4 2.6 29 154-182 74-115 (753)
191 PF13380 CoA_binding_2: CoA bi 23.3 84 0.0018 26.8 3.1 51 93-171 56-106 (116)
192 PRK10425 DNase TatD; Provision 23.2 6.9E+02 0.015 24.4 9.9 141 154-320 15-174 (258)
193 COG5520 O-Glycosyl hydrolase [ 23.2 2.5E+02 0.0054 29.4 6.8 58 102-171 152-212 (433)
194 PRK13209 L-xylulose 5-phosphat 22.8 7E+02 0.015 24.1 14.0 134 104-280 22-156 (283)
195 PRK08056 threonine-phosphate d 22.4 2.7E+02 0.0059 28.1 7.1 25 148-172 156-180 (356)
196 COG3033 TnaA Tryptophanase [Am 22.1 2.6E+02 0.0056 29.4 6.7 72 78-174 152-226 (471)
197 COG1306 Uncharacterized conser 22.0 2.4E+02 0.0051 28.9 6.2 153 102-266 76-251 (400)
198 PRK06290 aspartate aminotransf 22.0 1.2E+02 0.0026 31.6 4.6 25 147-171 192-216 (410)
199 PRK13361 molybdenum cofactor b 22.0 2.2E+02 0.0047 28.8 6.3 60 98-180 43-102 (329)
200 PF07931 CPT: Chloramphenicol 21.9 49 0.0011 30.7 1.4 24 213-236 16-39 (174)
201 PRK13361 molybdenum cofactor b 21.6 2.1E+02 0.0046 28.9 6.1 53 116-171 12-65 (329)
202 PRK04296 thymidine kinase; Pro 21.6 96 0.0021 28.7 3.3 25 149-173 88-112 (190)
203 PRK14334 (dimethylallyl)adenos 21.5 1E+02 0.0022 32.7 3.9 28 148-175 266-293 (440)
204 PRK13210 putative L-xylulose 5 21.5 1.3E+02 0.0028 29.2 4.4 61 102-174 93-153 (284)
205 TIGR03360 VI_minor_1 type VI s 21.4 1.1E+02 0.0024 28.9 3.6 33 85-123 124-156 (185)
206 PTZ00433 tyrosine aminotransfe 21.3 1.2E+02 0.0026 31.4 4.4 25 148-172 191-215 (412)
207 KOG3257 Mitochondrial/chloropl 21.3 50 0.0011 30.2 1.3 20 154-173 139-158 (168)
208 COG4108 PrfC Peptide chain rel 21.2 47 0.001 35.5 1.3 35 147-184 49-96 (528)
209 TIGR00387 glcD glycolate oxida 21.2 84 0.0018 33.0 3.2 23 151-173 5-27 (413)
210 TIGR00036 dapB dihydrodipicoli 21.2 3.3E+02 0.0071 26.8 7.2 54 91-173 71-124 (266)
211 PRK08247 cystathionine gamma-s 21.2 2.6E+02 0.0057 28.5 6.8 23 150-172 149-171 (366)
212 PF04476 DUF556: Protein of un 21.0 1.2E+02 0.0027 29.6 4.0 34 85-118 142-182 (235)
213 PRK14465 ribosomal RNA large s 20.9 3.2E+02 0.0069 28.2 7.2 39 86-128 186-224 (342)
214 COG1082 IolE Sugar phosphate i 20.7 2.6E+02 0.0055 26.8 6.3 79 88-176 171-253 (274)
215 COG1856 Uncharacterized homolo 20.5 3.1E+02 0.0066 27.0 6.4 145 82-234 50-229 (275)
216 COG0277 GlcD FAD/FMN-containin 20.5 93 0.002 32.5 3.3 24 150-173 38-61 (459)
217 COG2984 ABC-type uncharacteriz 20.4 1.2E+02 0.0025 31.1 3.8 44 145-189 166-214 (322)
218 TIGR02668 moaA_archaeal probab 20.4 2.2E+02 0.0049 28.1 5.9 53 116-171 8-60 (302)
219 COG0481 LepA Membrane GTPase L 20.4 75 0.0016 34.4 2.5 31 153-183 42-90 (603)
220 cd09013 BphC-JF8_N_like N-term 20.3 65 0.0014 26.7 1.7 32 151-182 71-102 (121)
No 1
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-95 Score=734.29 Aligned_cols=352 Identities=44% Similarity=0.837 Sum_probs=324.3
Q ss_pred ccccCCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCCCCCCCHHHHHHH
Q 013337 81 DGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSERYTMADAAEI 159 (445)
Q Consensus 81 ~a~~rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~~~~YT~~ei~ei 159 (445)
+|.|||+|||+|||+||||+|++.||+.||.||+.||||||||++|+||||+|++++|+|. +|||+.++.||.+|+++|
T Consensus 176 ~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~ev 255 (542)
T KOG2499|consen 176 QDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEV 255 (542)
T ss_pred eccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHH
Confidence 3557999999999999999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHcCCEEEeecCCchhhHHHHhhCCCC-CCC--CCC----CCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCC
Q 013337 160 VSYAQKRGINVLAELDVPGHALSWGKGYPSL-WPS--KDC----QEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGD 232 (445)
Q Consensus 160 v~yA~~rGI~VIPEID~PGH~~a~~~~ypel-~~~--~~~----~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgD 232 (445)
|+||+.|||+|+||||+|||+++|+.+||+| +|. ..| ..+|||+++.||+|+++++.|+.++||+.+||+|||
T Consensus 256 V~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~~HlGGD 335 (542)
T KOG2499|consen 256 VEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEFFHLGGD 335 (542)
T ss_pred HHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHHeecCCc
Confidence 9999999999999999999999999999996 332 222 246999999999999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHCCCChh--HHHHHHHHHHHHHHHHcCCeEEEecccccccCCCCCCCeEEEecCCCc---hH
Q 013337 233 EVNTSCWTLTPHVSKWLKEHSMNES--QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGGG---VA 307 (445)
Q Consensus 233 Ev~~~~w~~~p~~~~~~~~~g~~~~--~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~~~l~~~~ii~~W~~~~---~~ 307 (445)
||+..||+++|++|+||+++|+... +++.+|++++.+++.+.++++++|+|.+.+. ..+++++|||.|+... ..
T Consensus 336 EV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~-~~i~p~tiiq~W~~~~~~~~~ 414 (542)
T KOG2499|consen 336 EVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNK-RKIDPRTIIQIWKIGTWYPKE 414 (542)
T ss_pred eeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhcccc-ccCCCCceeeeeccCCccHHH
Confidence 9999999999999999999998765 6899999999999999999999999999864 4569999999999765 56
Q ss_pred HHHHHcCCcEEEeCCCccccccC--CcchhccccCCcCCCCCChhhhcceeeeeeeecCCCCCCchhhHhhHHHHHHHHH
Q 013337 308 QRVVAAGLRCIVSNQDKWYLDHL--DTTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAE 385 (445)
Q Consensus 308 ~~~~~~G~~vI~s~~~~~Yld~~--~~~w~~~Y~~~p~~~~~~~~~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE 385 (445)
.+.+.+||++|+|++.+||||++ +.+|.++|+.+|..+..+.+++++|+|||+|||||++|..+++.++|||+.|+||
T Consensus 415 ~k~v~~~~~~ivs~s~~wYLd~~~~g~dw~~~Y~~~p~~~~g~~~~k~lVlGGE~cmWgE~vD~t~L~~RlWPRAsA~AE 494 (542)
T KOG2499|consen 415 LKIVTKGYRFIVSNSAAWYLDHIGYGSDWRKVYNTEPLSGMGTPEQKKLVLGGEVCMWGEYVDNTNLESRLWPRASAAAE 494 (542)
T ss_pred HHHHhccCceEEEeccceEeeccccCCChhheeeccccccCCCHHHhhheecceeeeehhhccccccccccccchhHHHH
Confidence 78899999999999999999964 5799999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013337 386 RLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGIAAAPLAADTPLTQPGRSAPLEPGSCY 443 (445)
Q Consensus 386 ~~Ws~~~~~~~~~~~~~~Rl~~~~~~l~~~gi~~~p~~~~~~~~~~~~~~~~~p~~c~ 443 (445)
|+||.+.. ++..++.+||..|||||.+|||.|.|+ .+-+|+..|+.|.
T Consensus 495 RLWS~~~~--~~~~~A~~Rl~~~RcrLv~RGi~A~p~--------~p~~C~~~~~~c~ 542 (542)
T KOG2499|consen 495 RLWSNKKV--SRLLDAYPRLHLFRCRLVARGIGAQPV--------QPGWCLQEEGECP 542 (542)
T ss_pred Hhhccccc--chHHHHHHHHHHHHHHHHhcCCCcCCC--------CCcccccCCCCCC
Confidence 99995444 589999999999999999999999999 3455666777773
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=2e-91 Score=711.84 Aligned_cols=329 Identities=46% Similarity=0.809 Sum_probs=307.2
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCCCCCCCHHHHHHHHHHHH
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSERYTMADAAEIVSYAQ 164 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~~~~YT~~ei~eiv~yA~ 164 (445)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+ +|+|+.+++||++|+++||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HcCCEEEeecCCchhhHHHHhhCCCCCCCC----------CCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCcc
Q 013337 165 KRGINVLAELDVPGHALSWGKGYPSLWPSK----------DCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEV 234 (445)
Q Consensus 165 ~rGI~VIPEID~PGH~~a~~~~ypel~~~~----------~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv 234 (445)
+|||+||||||+|||+.+++++||+|.... .+...||+++|+|++|+++|++|++++||++||||||||+
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~ 160 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEV 160 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCC
Confidence 999999999999999999999999984211 1234799999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHCCCChh-HHHHHHHHHHHHHHHHcCCeEEEecccccccCCCCCCCeEEEecCCCchHHHHHHc
Q 013337 235 NTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGGGVAQRVVAA 313 (445)
Q Consensus 235 ~~~~w~~~p~~~~~~~~~g~~~~-~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~~~l~~~~ii~~W~~~~~~~~~~~~ 313 (445)
...||+++|.|+++|+++|++.. +++.+|++++.++++++||++++|+|++...+..++++++|+.|++...+.+++++
T Consensus 161 ~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~~~~~~~~iv~~W~~~~~~~~~~~~ 240 (348)
T cd06562 161 NFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGVYLLPKDTIVQVWGGSDELKNVLAA 240 (348)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCCccCCCCeEEEECCCcHHHHHHHHC
Confidence 99999999999999999997655 99999999999999999999999999987644468999999999998888999999
Q ss_pred CCcEEEeCCCccccccCC-------cchhccccCCcCCCCCChhhhcceeeeeeeecCCCCCCchhhHhhHHHHHHHHHH
Q 013337 314 GLRCIVSNQDKWYLDHLD-------TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAER 386 (445)
Q Consensus 314 G~~vI~s~~~~~Yld~~~-------~~w~~~Y~~~p~~~~~~~~~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE~ 386 (445)
||++|+|+++++|||+++ .+|+++|+++|.....++...++|+|||+|||+|++++.++++++|||++|+||+
T Consensus 241 G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~y~~~p~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~ 320 (348)
T cd06562 241 GYKVILSSYDFWYLDCGFGGWVGPGNDWCDPYKNWPRIYSGTPEQKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAER 320 (348)
T ss_pred CCCEEEeCCCcEEEeecCCCCCCCCCcHhhhhcCCCCCCCCChhhcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHH
Confidence 999999999999999864 3799999999976655556788999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHcC
Q 013337 387 LWTPYDKLAKEAKQVTGRLAHFRCLLNQRG 416 (445)
Q Consensus 387 ~Ws~~~~~~~~~~~~~~Rl~~~~~~l~~~g 416 (445)
+|+++.. +++++|..||..++++|.+||
T Consensus 321 ~W~~~~~--~~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 321 LWSGPSD--TNLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred hhCCCcC--CCHHHHHHHHHHHHHHHHhCc
Confidence 9999877 489999999999999999997
No 3
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=7.6e-88 Score=688.08 Aligned_cols=315 Identities=34% Similarity=0.628 Sum_probs=291.9
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCC----------------C
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYST----------------S 148 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~----------------~ 148 (445)
|+|||+|||+||||+|+++||++||.||++|||+|||||+|+||||||+++||+|+ +|+++. +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 89999999999999999999999999999999999999999999999999999998 788764 5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCC----------CCCCCCCCCChHHHHHHHHHHHHH
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSK----------DCQEPLDVSNEFTFKVIDGILSDF 218 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~----------~~~~~Ld~~~~~t~~fl~~ll~E~ 218 (445)
++||++|+++||+||++|||+||||||+|||+.+++++||+|.... ...++|||++|+|++|+++|++|+
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~ 160 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV 160 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999995321 124589999999999999999999
Q ss_pred hhhcCCceEEecCCccccccccCCHHHHHHHHHCCCChh-HHHHHHHHHHHHHHHHcCCeEEEecccccccCCCCCCCeE
Q 013337 219 SKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTV 297 (445)
Q Consensus 219 ~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~-~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~~~l~~~~i 297 (445)
+++||++||||||||+...||+++|.|+++|+++|++.. +++.+|++++.++++++|+++++|+|++.. .+++++|
T Consensus 161 ~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~---~l~~~~i 237 (357)
T cd06563 161 AELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEG---GLPPNAT 237 (357)
T ss_pred HHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeeccccc---CCCCCcE
Confidence 999999999999999999999999999999999998654 899999999999999999999999999764 3899999
Q ss_pred EEecCCCchHHHHHHcCCcEEEeCCCccccccCC-------------cchhccccCCcCCCCCChhhhcceeeeeeeecC
Q 013337 298 VHNWLGGGVAQRVVAAGLRCIVSNQDKWYLDHLD-------------TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWG 364 (445)
Q Consensus 298 i~~W~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~-------------~~w~~~Y~~~p~~~~~~~~~~~~ilG~e~~lW~ 364 (445)
|++|++...+.+++++||++|+|++.++|||+.+ .+|+++|+++|......++.+++|+|||+|||+
T Consensus 238 v~~W~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~ 317 (357)
T cd06563 238 VMSWRGEDGGIKAAKQGYDVIMSPGQYLYLDYAQSKGPDEPASWAGFNTLEKVYSFEPVPGGLTPEQAKRILGVQANLWT 317 (357)
T ss_pred EEECCCchHHHHHHHCCCCEEEeCCCceEEecCCCCCCCCCccccCCCCHHHHhcCCCCCCCCChhHhcCEEEEEEEecc
Confidence 9999998888999999999999999999999864 368999999999876666788999999999999
Q ss_pred CCCC-CchhhHhhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 013337 365 ETVD-ASDIQQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRL 405 (445)
Q Consensus 365 E~~~-~~~l~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~Rl 405 (445)
|++. .+++++++|||++|+||++|++++. +++++|..||
T Consensus 318 E~~~~~~~~~~~~~PR~~a~AE~~W~~~~~--~~~~~f~~rl 357 (357)
T cd06563 318 EYIPTPERVEYMAFPRLLALAEVAWTPPEK--KDWEDFRKRL 357 (357)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCccC--CCHHHHHhhC
Confidence 9995 4689999999999999999999876 5999999885
No 4
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.1e-87 Score=671.32 Aligned_cols=299 Identities=37% Similarity=0.739 Sum_probs=278.1
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCCCCCCCHHHHHHHHHHHH
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSERYTMADAAEIVSYAQ 164 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~~~~YT~~ei~eiv~yA~ 164 (445)
|+|||+|||+||||+|+++||++||.||++|||+|||||||+||||+|+++||+|+ +|+ .+++||++|+++||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~--~~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKAS--DGLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCC--CCCccCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999998 665 568999999999999999
Q ss_pred HcCCEEEeecCCchhhHHHHhhCCCCCCCC----------CCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCcc
Q 013337 165 KRGINVLAELDVPGHALSWGKGYPSLWPSK----------DCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEV 234 (445)
Q Consensus 165 ~rGI~VIPEID~PGH~~a~~~~ypel~~~~----------~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv 234 (445)
+|||+||||||+|||+.+|+++||+|.... .....|||++|+|++|+++|++|++++||++||||||||+
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~iHiGgDE~ 158 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELFPDEYFHIGGDEV 158 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHHHhCCCCceEeeccCC
Confidence 999999999999999999999999994321 1134799999999999999999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHCCCChh-HHHHHHHHHHHHHHHHcCCeEEEecccccccCCCCCCCeEEEecCCCchHHHHHHc
Q 013337 235 NTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGGGVAQRVVAA 313 (445)
Q Consensus 235 ~~~~w~~~p~~~~~~~~~g~~~~-~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~~~l~~~~ii~~W~~~~~~~~~~~~ 313 (445)
...||+++|.|+++|+++|++.. +++.+|++++.++++++||++++|+|++. ..+++++||+.|.+...+.+++++
T Consensus 159 ~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~---~~l~~~~iv~~W~~~~~~~~~~~~ 235 (311)
T cd06570 159 DPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLH---PDLPKNVVIQSWRGHDSLGEAAKA 235 (311)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeccccc---cCCCCCeEEEEeCCchHHHHHHHC
Confidence 99999999999999999998765 89999999999999999999999999874 468999999999988888999999
Q ss_pred CCcEEEeCCCccccccCCcchhccccCCcCCCCCChhhhcceeeeeeeecCCCCCCchhhHhhHHHHHHHHHHhcCCCCC
Q 013337 314 GLRCIVSNQDKWYLDHLDTTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAERLWTPYDK 393 (445)
Q Consensus 314 G~~vI~s~~~~~Yld~~~~~w~~~Y~~~p~~~~~~~~~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE~~Ws~~~~ 393 (445)
||++|+|++ +|||+.+ ++..+|+++|. |+|||+|||+|+++++++++++|||++|+||++||+++.
T Consensus 236 G~~vI~s~~--~YlD~~~-~~~~~y~~~p~-----------ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~~~~ 301 (311)
T cd06570 236 GYQGILSTG--YYIDQPQ-PAAYHYRVDPM-----------ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSAQDV 301 (311)
T ss_pred CCCEEEech--hheeCCC-chhheeCCCCc-----------EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCCCcC
Confidence 999999985 8999876 57889998876 999999999999998999999999999999999999887
Q ss_pred CcccHHHHHHHH
Q 013337 394 LAKEAKQVTGRL 405 (445)
Q Consensus 394 ~~~~~~~~~~Rl 405 (445)
+|+++|+.||
T Consensus 302 --~~~~~~~~Rl 311 (311)
T cd06570 302 --RDEDDMYRRL 311 (311)
T ss_pred --CCHHHHHhhC
Confidence 4899999886
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.6e-84 Score=676.90 Aligned_cols=312 Identities=28% Similarity=0.477 Sum_probs=276.3
Q ss_pred cccCCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCC--------------
Q 013337 82 GFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYS-------------- 146 (445)
Q Consensus 82 a~~rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~-------------- 146 (445)
|.|||+|||||||+||||+|+++||++||.||++|||+||||||||||||||+++||+|+ +|+|.
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 679999999999999999999999999999999999999999999999999999999999 77762
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhh----CCCCCCCC-------------------
Q 013337 147 ---------TSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKG----YPSLWPSK------------------- 194 (445)
Q Consensus 147 ---------~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~----ypel~~~~------------------- 194 (445)
.+++||++||++||+||++|||+||||||+|||+.+++++ ||+|...+
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 2578999999999999999999999999999999999876 88873211
Q ss_pred -----CCCCCCCCCChHHHHHHHHHHHHHhhhc-----CCceEEecCCccccccccCCHHHH--HHHHHCCCChh-HHHH
Q 013337 195 -----DCQEPLDVSNEFTFKVIDGILSDFSKVF-----KYKFVHLGGDEVNTSCWTLTPHVS--KWLKEHSMNES-QAYQ 261 (445)
Q Consensus 195 -----~~~~~Ld~~~~~t~~fl~~ll~E~~~lF-----p~~~~HiGgDEv~~~~w~~~p~~~--~~~~~~g~~~~-~l~~ 261 (445)
.+..+|||++|+||+|+++||+|++++| |++||||||||+...||+++|.|+ ++|+++|++.. +++.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 0234799999999999999999999999 679999999999999999999999 99999988764 9999
Q ss_pred HHHHHHHHHHHHcCCeEEEecccccccCC-----CCCCCeEEEecCC-----CchHHHHHHcCCcEEEeCCCccccccCC
Q 013337 262 YFVLQAQKIALLHGYEIVNWEETFNNFGN-----KLSPKTVVHNWLG-----GGVAQRVVAAGLRCIVSNQDKWYLDHLD 331 (445)
Q Consensus 262 ~F~~~l~~~v~~~G~~~~~W~d~~~~~~~-----~l~~~~ii~~W~~-----~~~~~~~~~~G~~vI~s~~~~~Yld~~~ 331 (445)
+|++++.++++++|+++++|+|++...+. .++++++|+.|++ ...+.+++++||+||+||+.++|||+.+
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~~~~~v~~W~~~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~ 320 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFATPYVWNNVWGWGYWGGEDRAYKLANKGYDVVLSNATNLYFDFPY 320 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCCcccccccCCCCeEEEEccCCcccccHHHHHHHHCCCCEEEeCCCcEEEecCC
Confidence 99999999999999999999999876542 4678999999975 2467889999999999999999999742
Q ss_pred ---------------cchhccccCCcCCC----------------------CCChhhhcceeeeeeeecCCCCCC-chhh
Q 013337 332 ---------------TTWEQFYMNEPLTN----------------------ITKSEQQKLVIGGEVCMWGETVDA-SDIQ 373 (445)
Q Consensus 332 ---------------~~w~~~Y~~~p~~~----------------------~~~~~~~~~ilG~e~~lW~E~~~~-~~l~ 373 (445)
.+|++.|+++|... ...++++++|+|||+|||+|+++. ++++
T Consensus 321 ~~~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e~~lWsE~v~~~~~l~ 400 (445)
T cd06569 321 EKHPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQGQLWSETIRTDEQLE 400 (445)
T ss_pred CCCCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEEEeeeccccCCHHHhH
Confidence 35677899888521 012456789999999999999964 6799
Q ss_pred HhhHHHHHHHHHHhcCCCCC
Q 013337 374 QTIWPRAAAAAERLWTPYDK 393 (445)
Q Consensus 374 ~~i~PR~~a~AE~~Ws~~~~ 393 (445)
+++|||++|+||++||+...
T Consensus 401 ~~~~PR~~A~AE~~Ws~~~~ 420 (445)
T cd06569 401 YMVFPRLLALAERAWHKAPW 420 (445)
T ss_pred HHhhhHHHHHHHHHhcCCcc
Confidence 99999999999999999765
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=1e-82 Score=642.82 Aligned_cols=296 Identities=32% Similarity=0.540 Sum_probs=268.0
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCC-----CCCCCCCHHHHHHH
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAY-----STSERYTMADAAEI 159 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay-----~~~~~YT~~ei~ei 159 (445)
|+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+|+ .|++ +.+++||++|+++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 6765 35789999999999
Q ss_pred HHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCC----------CCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEe
Q 013337 160 VSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKD----------CQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 229 (445)
Q Consensus 160 v~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~----------~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~Hi 229 (445)
|+||++|||+||||||+|||+.+++++||+|...+. +..+||+++|+|++|+++|++|++++||++||||
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHi 160 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHI 160 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999999999999999999999954321 1357999999999999999999999999999999
Q ss_pred cCCccccccccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeEEEecccccccCCCCCCCeEEEecCCC---ch
Q 013337 230 GGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGG---GV 306 (445)
Q Consensus 230 GgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~~~l~~~~ii~~W~~~---~~ 306 (445)
||||+... ..++|.+|++++.++++++||++++|+|.+. ..+++++||+.|++. ..
T Consensus 161 GgDE~~~~------------------~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~---~~l~~~~iv~~W~~~~~~~~ 219 (329)
T cd06568 161 GGDEAHST------------------PHDDYAYFVNRVRAIVAKYGKTPVGWQEIAR---ADLPAGTVAQYWSDRAPDAD 219 (329)
T ss_pred ecccCCCC------------------chHHHHHHHHHHHHHHHHCCCeEEEECcccc---cCCCCCeEEEECCCCCCchH
Confidence 99999753 2367899999999999999999999999974 359999999999986 57
Q ss_pred HHHHHHcCCcEEEeCCCccccccCC-------------cchhccccCCcCCCCCChhhhcceeeeeeeecCCCCCC-chh
Q 013337 307 AQRVVAAGLRCIVSNQDKWYLDHLD-------------TTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDA-SDI 372 (445)
Q Consensus 307 ~~~~~~~G~~vI~s~~~~~Yld~~~-------------~~w~~~Y~~~p~~~~~~~~~~~~ilG~e~~lW~E~~~~-~~l 372 (445)
+.+++++||++|+|+++++|||+.+ .+|+++|+++|.....+ +.+++|+|||+|||+|++++ +++
T Consensus 220 ~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~~~-~~~~~ilG~~~~lW~E~~~~~~~~ 298 (329)
T cd06568 220 AAAALDKGAKVILSPADKAYLDMKYDADSPLGLTWAGPVEVREAYDWDPAAYGPG-VPDEAILGVEAPLWTETIRNLDDL 298 (329)
T ss_pred HHHHHHCCCCEEEeCCCcEEEecCCCCCCCCCcccCCCCCHHHHeeeCCCCCCCc-chhhCEEEEEEeecccccCCHHHH
Confidence 8899999999999999999999852 36899999999876543 45789999999999999976 579
Q ss_pred hHhhHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 013337 373 QQTIWPRAAAAAERLWTPYDKLAKEAKQVTGRL 405 (445)
Q Consensus 373 ~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~Rl 405 (445)
++++|||++|+||++||+++. +|+++|..||
T Consensus 299 ~~~~~PR~~a~AE~~Ws~~~~--~~~~~f~~rl 329 (329)
T cd06568 299 EYMAFPRLAGVAEIGWSPQEA--RDWDDYKVRL 329 (329)
T ss_pred HHHHHhHHHHHHHHHhCCCcC--CCHHHHHhhC
Confidence 999999999999999999886 4899998885
No 7
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=3.5e-79 Score=620.79 Aligned_cols=306 Identities=40% Similarity=0.787 Sum_probs=266.5
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCCCC---CCCHHHHHHHHH
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSE---RYTMADAAEIVS 161 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~~~---~YT~~ei~eiv~ 161 (445)
|+|||+|||+||||+|+++||++||.||.+|||+|||||+|+||||+|++++|+|+ .|+++... +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999 78877654 999999999999
Q ss_pred HHHHcCCEEEeecCCchhhHHHHhhCCCCCCC----C------CC----CCCCCCCChHHHHHHHHHHHHHhhhcCCceE
Q 013337 162 YAQKRGINVLAELDVPGHALSWGKGYPSLWPS----K------DC----QEPLDVSNEFTFKVIDGILSDFSKVFKYKFV 227 (445)
Q Consensus 162 yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~----~------~~----~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~ 227 (445)
||++|||+||||||+|||+++++++||++... . .+ ..+|||++|+|++|+++|++|++++||+++|
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~i 160 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYI 160 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeE
Confidence 99999999999999999999999999988542 1 11 1369999999999999999999999999999
Q ss_pred EecCCccccccccCCHHHHHHHHHCCCChh-HHHHHHHHHHHHHHHHcCCeEEEecccccccC--CCCCCCeEEEecCCC
Q 013337 228 HLGGDEVNTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFG--NKLSPKTVVHNWLGG 304 (445)
Q Consensus 228 HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~-~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~--~~l~~~~ii~~W~~~ 304 (445)
||||||++..||.++|.|+++|+++|++.. +++.+|++++.++++++|+++++|+|++...+ ..++++++|+.|++.
T Consensus 161 HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~~~i~~W~~~ 240 (351)
T PF00728_consen 161 HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPDASLLPKDVIIQVWNYD 240 (351)
T ss_dssp EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCCGHCSCTTEEEEEESST
T ss_pred EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCccccccCCceEEEeecc
Confidence 999999999999999999999999997654 99999999999999999999999999998765 368999999999984
Q ss_pred ---chHHHHHHcCCcEEEeCCCccccccCCc--------------chhccccCCcCCCCCC-----hhhh-cceeeeeee
Q 013337 305 ---GVAQRVVAAGLRCIVSNQDKWYLDHLDT--------------TWEQFYMNEPLTNITK-----SEQQ-KLVIGGEVC 361 (445)
Q Consensus 305 ---~~~~~~~~~G~~vI~s~~~~~Yld~~~~--------------~w~~~Y~~~p~~~~~~-----~~~~-~~ilG~e~~ 361 (445)
..+..++++||++|+++...+|+|+... +|..+|+++|...... +.+. ++|+|+++|
T Consensus 241 ~~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~ 320 (351)
T PF00728_consen 241 WGPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPEEDGNYWAPFNTWSDFYNWDPAYFNTNSTQIDPAQKSERILGGEAA 320 (351)
T ss_dssp THHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTSSSSBHTTSTHHHHHHHHHHHCHCTTTCSTTTTHHHCCCEEEEEEE
T ss_pred ccchhhhHHHHhcCcEEEcCCCceEEccCcCCCCccCcccccccccccccccccccccccccchhhhhcccCCCceeEEE
Confidence 5678899999999999988999998653 2456777777655432 3333 599999999
Q ss_pred ecCCCC-CCchhhHhhHHHHHHHHHHhcCCC
Q 013337 362 MWGETV-DASDIQQTIWPRAAAAAERLWTPY 391 (445)
Q Consensus 362 lW~E~~-~~~~l~~~i~PR~~a~AE~~Ws~~ 391 (445)
+|+|.+ +.+++.+++|||++|+||++||+.
T Consensus 321 ~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~~ 351 (351)
T PF00728_consen 321 LWSENIRDEEDLDYRLWPRLAALAERLWSPQ 351 (351)
T ss_dssp EETTTTTSHHHHHHHHTTHHHHHHHHHHSS-
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999 667899999999999999999973
No 8
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5e-77 Score=596.02 Aligned_cols=284 Identities=32% Similarity=0.620 Sum_probs=255.4
Q ss_pred cceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-cc----CCCCCCCCCHHHHHHHHHH
Q 013337 88 FRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DG----AYSTSERYTMADAAEIVSY 162 (445)
Q Consensus 88 ~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~G----ay~~~~~YT~~ei~eiv~y 162 (445)
|||+|||+||||+|+++||++||.||.+|||+|||||+|+||||+|+++||+|+ +| +++.+++||++|+++|++|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999998 66 5677899999999999999
Q ss_pred HHHcCCEEEeecCCchhhHHHHhhCCCCCCC-------CCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCccc
Q 013337 163 AQKRGINVLAELDVPGHALSWGKGYPSLWPS-------KDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVN 235 (445)
Q Consensus 163 A~~rGI~VIPEID~PGH~~a~~~~ypel~~~-------~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~ 235 (445)
|++|||+||||||+|||+.+++++||++... .....+|||++|+|++|+++|++|++++||+++|||||||+.
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~ 160 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAH 160 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecC
Confidence 9999999999999999999999999998421 122458999999999999999999999999999999999997
Q ss_pred cccccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeEEEecccccccCCCCCCCeEEEecCCC-----chHHHH
Q 013337 236 TSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLGG-----GVAQRV 310 (445)
Q Consensus 236 ~~~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~~~l~~~~ii~~W~~~-----~~~~~~ 310 (445)
.. .+..+++.+|+++++++++++|+++++|+|++... ..++++++|+.|.+. ..+.++
T Consensus 161 ~~----------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~-~~l~~~~ii~~W~~~~~~~~~~~~~~ 223 (303)
T cd02742 161 FK----------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKK-MKLKEDVIVQYWDYDGDKYNVELPEA 223 (303)
T ss_pred CC----------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCC-CCCCCCeEEEEccCCCCcchHHHHHH
Confidence 64 12358999999999999999999999999998652 368999999999986 578889
Q ss_pred HHcCCcEEEeCCCcccc-ccCCcchhccccCCcCCCCCChhhhcceeeeeeeecCCCCCCc-hhhHhhHHHHHHHHHHhc
Q 013337 311 VAAGLRCIVSNQDKWYL-DHLDTTWEQFYMNEPLTNITKSEQQKLVIGGEVCMWGETVDAS-DIQQTIWPRAAAAAERLW 388 (445)
Q Consensus 311 ~~~G~~vI~s~~~~~Yl-d~~~~~w~~~Y~~~p~~~~~~~~~~~~ilG~e~~lW~E~~~~~-~l~~~i~PR~~a~AE~~W 388 (445)
+++||++|+|++.++|+ .....+|+++|.++|.... .++.+++|+|+++|||+|+++.. ++++++|||++|+||++|
T Consensus 224 ~~~G~~vi~s~~~yly~~~~~~~~~~~~y~~~p~~~~-~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~W 302 (303)
T cd02742 224 AAKGFPVILSNGYYLDIFIDGALDARKVYKNDPLAVP-TPQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSW 302 (303)
T ss_pred HHCCCCEEEeCCceeeeeCCCCCCHHHHhCCCCCCCC-CcccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999877777 2244689999999997654 34567899999999999999876 899999999999999999
Q ss_pred C
Q 013337 389 T 389 (445)
Q Consensus 389 s 389 (445)
|
T Consensus 303 s 303 (303)
T cd02742 303 S 303 (303)
T ss_pred C
Confidence 7
No 9
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.7e-73 Score=573.45 Aligned_cols=286 Identities=26% Similarity=0.482 Sum_probs=252.0
Q ss_pred ccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCc-cC---------------CCCCCC
Q 013337 87 SFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GA---------------YSTSER 150 (445)
Q Consensus 87 ~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~-Ga---------------y~~~~~ 150 (445)
.+||+|||+||||+|+++||++||.||++|||+|||||+| +||++++.+|+++. |+ ++.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4899999999999999999999999999999999999999 79999999999983 22 356789
Q ss_pred CCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCC----CCCCCCCCCCChHHHHHHHHHHHHHhhhcC--C
Q 013337 151 YTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPS----KDCQEPLDVSNEFTFKVIDGILSDFSKVFK--Y 224 (445)
Q Consensus 151 YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~----~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp--~ 224 (445)
||++|+++||+||++|||+||||||+|||+.+|+++||++... .....+||+++|+|++|+++|++|++++|| +
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~ 158 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKS 158 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999998543 234568999999999999999999999999 9
Q ss_pred ceEEecCCccccccccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeEEEecccccccC--CCCCCCeEEEecC
Q 013337 225 KFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFG--NKLSPKTVVHNWL 302 (445)
Q Consensus 225 ~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~--~~l~~~~ii~~W~ 302 (445)
+||||||||+... .+..++|.+|+++++++++++||++++|+|++...+ ..++++++|++|.
T Consensus 159 ~~~HiGgDE~~~~----------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~~~~l~~~~iv~~W~ 222 (326)
T cd06564 159 DTVHIGADEYAGD----------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGDTTVLSKDVIINYWS 222 (326)
T ss_pred CEEEecccccccc----------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCCcccCCCCeEEEeCC
Confidence 9999999999764 223589999999999999999999999999987654 5799999999999
Q ss_pred CC-chHHHHHHcCCcEEEeCCCccccccCCc------chhccccCCcCCCC-----CChhhhcceeeeeeeecCCCCCC-
Q 013337 303 GG-GVAQRVVAAGLRCIVSNQDKWYLDHLDT------TWEQFYMNEPLTNI-----TKSEQQKLVIGGEVCMWGETVDA- 369 (445)
Q Consensus 303 ~~-~~~~~~~~~G~~vI~s~~~~~Yld~~~~------~w~~~Y~~~p~~~~-----~~~~~~~~ilG~e~~lW~E~~~~- 369 (445)
+. ..+.+++++||++|+|++.++|+|+.+. +|+++|++.+...+ ..++..++|+|+++|||+|.++.
T Consensus 223 ~~~~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ilG~~~~lW~E~~~~~ 302 (326)
T cd06564 223 YGWADPKELLNKGYKIINTNDGYLYIVPGAGYYGDYLNTEDIYNNWTPNKFGGTNATLPEGDPQILGGMFAIWNDDSDAG 302 (326)
T ss_pred CcccCHHHHHHCCCcEEEeCCCcEEEeCCCccCCCccCHHHHHhcCCccccCCCCccCCCCCCCcchhheeeecCCCCcC
Confidence 86 5688999999999999999999997542 46778876543222 12456789999999999999963
Q ss_pred ---chhhHhhHHHHHHHHHHhcCC
Q 013337 370 ---SDIQQTIWPRAAAAAERLWTP 390 (445)
Q Consensus 370 ---~~l~~~i~PR~~a~AE~~Ws~ 390 (445)
.++++++|||++|+||++|++
T Consensus 303 ~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 303 ISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCC
Confidence 679999999999999999985
No 10
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-65 Score=535.09 Aligned_cols=370 Identities=28% Similarity=0.484 Sum_probs=314.6
Q ss_pred ccCccEEEEcC-CeeEEEcCC---CCCCCcc--------------ee----eccccCCccceeeeecCCCCCChHHHHHH
Q 013337 51 SHGHKSLYVGK-DFKIMSQGS---KYKDASG--------------IL----KDGFSRFSFRGLLIDTSRHYQPLPIIKNV 108 (445)
Q Consensus 51 ~~g~~~~~~~~-~~~~~~~g~---~~~~~~~--------------il----~~a~~rf~~RGlmLD~aR~f~p~~~lk~~ 108 (445)
..|.+.+.+.+ ..+|...+. .|+.++. ++ .-|.|||.|||+|+|+||||++++.+|++
T Consensus 204 ~~e~y~la~~d~ai~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p~~~I~DaPRf~~rGllvDvaRqf~s~~~vk~~ 283 (732)
T COG3525 204 GEEAYRLAINDKAIKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFPAVTIVDAPRFAWRGLLVDVARQFHSTDDVKRL 283 (732)
T ss_pred cchhheeecccceeEEeeccccchhhhHHHHHhhhccccccCCCeeeeeeecccCcccchhhhhHhhhhhcCCHHHHHHH
Confidence 55778888887 466665332 2432111 11 23568999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCC----------------CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 109 IDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAY----------------STSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 109 Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay----------------~~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
||.|+.+|||+|||||+||||||+||++||+|+ .|+. ..+++||++++++|++||+.|+|+||
T Consensus 284 Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~yAsar~Itvi 363 (732)
T COG3525 284 IDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAYASARQITVI 363 (732)
T ss_pred HHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHHHhhcCceec
Confidence 999999999999999999999999999999998 4542 23589999999999999999999999
Q ss_pred eecCCchhhHHHHhhCCCCCC-----CC------CCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCcccccccc
Q 013337 172 AELDVPGHALSWGKGYPSLWP-----SK------DCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWT 240 (445)
Q Consensus 172 PEID~PGH~~a~~~~ypel~~-----~~------~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~ 240 (445)
||||+|||+.+.+.++|++.. +. ..+..||++-+-+++|++++++|+.++||+.+|||||||+....|.
T Consensus 364 PeiD~PgHa~aav~A~p~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiGgDE~~~~qwk 443 (732)
T COG3525 364 PEIDMPGHARAAVVAYPDLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIGGDEFIDGQWK 443 (732)
T ss_pred CCcCCcchhhhhhhhCccccccccCCCcchhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEeccchhccCeee
Confidence 999999999999999996531 11 1123688999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHHCCCChh-HHHHHHHHHHHHHHHHcCCeEEEecccccccC---CCCCCCeEEEecCCCchHHHHHHcCC
Q 013337 241 L-TPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETFNNFG---NKLSPKTVVHNWLGGGVAQRVVAAGL 315 (445)
Q Consensus 241 ~-~p~~~~~~~~~g~~~~-~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~---~~l~~~~ii~~W~~~~~~~~~~~~G~ 315 (445)
. +|.|++.|++.|.+.. +++.+|++++.+++.++|++.++|+|.+.... ..+.+++.|++|.+.+..-.++++||
T Consensus 444 ~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~~~~~t~~~~vm~W~~~~~ai~~akqg~ 523 (732)
T COG3525 444 ASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVNGTALTANVTVMSWYGKDKAIELAKQGY 523 (732)
T ss_pred ccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCccccccCceEEEEEecchhhHHHHhhcc
Confidence 9 9999999999998765 88999999999999999999999999986532 12337999999999988889999999
Q ss_pred cEEEeCCCccccccCC--------cchh------c-cccCCcCCCCC-ChhhhcceeeeeeeecCCCCCC-chhhHhhHH
Q 013337 316 RCIVSNQDKWYLDHLD--------TTWE------Q-FYMNEPLTNIT-KSEQQKLVIGGEVCMWGETVDA-SDIQQTIWP 378 (445)
Q Consensus 316 ~vI~s~~~~~Yld~~~--------~~w~------~-~Y~~~p~~~~~-~~~~~~~ilG~e~~lW~E~~~~-~~l~~~i~P 378 (445)
++|+++...+|+|+.+ ..|. + .|..+|..... +++..+.++|.++|+|+|.+.. ..+++++||
T Consensus 524 dvv~tp~~~~ylD~~q~~~peepg~~~a~t~~l~r~~y~~~~~g~~~~~de~~k~~~G~q~~lWse~~~~~~~f~~~vfp 603 (732)
T COG3525 524 DVVLTPAQFVYLDMLQIAAPEEPGYSWATTTPLERNKYAYDFAGKQPINDELAKRILGVQAALWSEHIQTRGRFEYMVFP 603 (732)
T ss_pred cccccchhhhhhhhhcccccccCCCccccccccchhhhhhcccCcccCChHHhhhhhhhHHHHHHHHhhhhhHHHHHhcc
Confidence 9999999999999864 2332 2 56666654333 2678899999999999999975 568999999
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCCCCC
Q 013337 379 RAAAAAERLWTPYDKLAKEAKQVTGRLAHFRCLLNQRGIAAAPL 422 (445)
Q Consensus 379 R~~a~AE~~Ws~~~~~~~~~~~~~~Rl~~~~~~l~~~gi~~~p~ 422 (445)
|++|+|||+|++... +|+..+..|+.....+++..+|++.+.
T Consensus 604 rl~a~aEraw~p~a~--~Dw~~~~~r~~~~~~l~~~~~~~~~~~ 645 (732)
T COG3525 604 RLAAAAERAWTPMAF--NDWLYYLDRLSAQLPLLVLISIPYNAW 645 (732)
T ss_pred hHHHHHHhhCCchhh--cchhhhhhhcchhcchhhhhccccccc
Confidence 999999999999877 499999999999999999989887665
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.1e-54 Score=434.17 Aligned_cols=280 Identities=20% Similarity=0.252 Sum_probs=226.5
Q ss_pred cceeeeecCC-CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHc
Q 013337 88 FRGLLIDTSR-HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR 166 (445)
Q Consensus 88 ~RGlmLD~aR-~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~r 166 (445)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ |++ +++|+++. .+++||++|+++|++||++|
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f~~--~~~p~~~~----~~~~yT~~ei~ei~~yA~~~ 72 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--FPY--EGEPEVGR----MRGAYTKEEIREIDDYAAEL 72 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--eec--CCCccccc----CCCCcCHHHHHHHHHHHHHc
Confidence 6999999999 999999999999999999999999999994 444 57899862 36789999999999999999
Q ss_pred CCEEEeecCCchhhHHHHhh--CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCccccccccCCHH
Q 013337 167 GINVLAELDVPGHALSWGKG--YPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPH 244 (445)
Q Consensus 167 GI~VIPEID~PGH~~a~~~~--ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~~~p~ 244 (445)
||+||||||+|||++++++. |.+++.......+|||++|+|++|+++|++|++++||+++|||||||+...+ .++.
T Consensus 73 gI~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g--~~~~ 150 (301)
T cd06565 73 GIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLG--RGRS 150 (301)
T ss_pred CCEEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccC--CCHH
Confidence 99999999999999999973 3344444445678999999999999999999999999999999999998643 3444
Q ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeEEEeccccccc---C---CCCCCCeEEEecCCCch-------HHHHH
Q 013337 245 VSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNF---G---NKLSPKTVVHNWLGGGV-------AQRVV 311 (445)
Q Consensus 245 ~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~---~---~~l~~~~ii~~W~~~~~-------~~~~~ 311 (445)
++++ ...+..++|..|+++++++++++|+++++|+|++... + ..||+++++++|.+... .....
T Consensus 151 ~~~~---~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~l~~~v~~~~W~y~~~~~~~~~~~~~~~ 227 (301)
T cd06565 151 LRKH---GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEALSGLPKLVTPVVWDYYADLDEHDRPIGLWK 227 (301)
T ss_pred HHHh---cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHHHhCCCCCeEEEEecCcCCcchhhHhHHHHH
Confidence 5432 3345569999999999999999999999999998762 2 47999999999997532 34455
Q ss_pred HcCCcEEEeCCCccccccCCcchhccccC--CcCCCCC---ChhhhcceeeeeeeecCCCCCCchhhHhhHHHHHHHHHH
Q 013337 312 AAGLRCIVSNQDKWYLDHLDTTWEQFYMN--EPLTNIT---KSEQQKLVIGGEVCMWGETVDASDIQQTIWPRAAAAAER 386 (445)
Q Consensus 312 ~~G~~vI~s~~~~~Yld~~~~~w~~~Y~~--~p~~~~~---~~~~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE~ 386 (445)
+.|...+++++.. .|..+++. .-+.|+. ....+..+.|...+.|+|......+ ..++|.+++.||.
T Consensus 228 ~~~~~~~~~~g~~--------~w~~~~~~~~~~~~n~~~~~~~~~~~~~~G~~~T~W~d~g~~~~~-~~~~p~~~~~~~~ 298 (301)
T cd06565 228 KYGSVFAVAWGAS--------AWKGATPPNDKHLENIKSWLKAAKKNGVQGILLTGWGDYGHEAVL-CELLPGLIPSLAL 298 (301)
T ss_pred HhCCCceEeeeec--------hhccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEecCCCCCcccH-HHHHHHHHHHHHH
Confidence 6777777776542 45554421 0011111 2235778999999999999876554 7899999999999
Q ss_pred hcC
Q 013337 387 LWT 389 (445)
Q Consensus 387 ~Ws 389 (445)
.|+
T Consensus 299 ~~~ 301 (301)
T cd06565 299 ALG 301 (301)
T ss_pred hcC
Confidence 885
No 12
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.49 E-value=0.009 Score=60.53 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=115.0
Q ss_pred ccceeeeecCCC--CCChHHHHHHHHHHHHcCCcEEEEEEecCCccc-eeeCCCCCCC--ccCCCCCCCCCHHHHHHHHH
Q 013337 87 SFRGLLIDTSRH--YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLW--DGAYSTSERYTMADAAEIVS 161 (445)
Q Consensus 87 ~~RGlmLD~aR~--f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~fr-le~~~~P~L~--~Gay~~~~~YT~~ei~eiv~ 161 (445)
..||+=|++..+ +...+.+.++|+.|...++|++-++.-- .|.. +.|+-.|... .|. ....-..+=+..+|+
T Consensus 1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~--~~~~pg~DpL~~~I~ 77 (311)
T PF02638_consen 1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGK--QGKDPGFDPLEFMIE 77 (311)
T ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCC--CCCCCCccHHHHHHH
Confidence 368998988764 4468889999999999999998888764 3443 3455555321 121 111224667999999
Q ss_pred HHHHcCCEEEeec--CCchhh-HHHHhhCCCCC----CCC--------CCCCCCCCCChHHHHHHHHHHHHHhhhcCCce
Q 013337 162 YAQKRGINVLAEL--DVPGHA-LSWGKGYPSLW----PSK--------DCQEPLDVSNEFTFKVIDGILSDFSKVFKYKF 226 (445)
Q Consensus 162 yA~~rGI~VIPEI--D~PGH~-~a~~~~ypel~----~~~--------~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~ 226 (445)
-|.+|||+|.+=| -+.++. ..+.+.+|+-. +.. ...--|||++|++.+++.+++.|+.+-.+-.=
T Consensus 78 eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDG 157 (311)
T PF02638_consen 78 EAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDG 157 (311)
T ss_pred HHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCe
Confidence 9999999999976 233332 22344566531 110 01124999999999999999999998777555
Q ss_pred EEecCCcccc--ccccC-CHHHHHHHHHCC---CCh----------hHHHHHHHHHHHHHHHHcC
Q 013337 227 VHLGGDEVNT--SCWTL-TPHVSKWLKEHS---MNE----------SQAYQYFVLQAQKIALLHG 275 (445)
Q Consensus 227 ~HiGgDEv~~--~~w~~-~p~~~~~~~~~g---~~~----------~~l~~~F~~~l~~~v~~~G 275 (445)
||+ |-+.. ..+.. .+..+.|.+..| .+. .+--..|++++.+.+++.+
T Consensus 158 Ihl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 158 IHL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred EEe--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 664 32211 11222 233445555543 111 1333467777777777654
No 13
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.82 E-value=0.027 Score=57.15 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeC-CCCCCC-ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIP-SYPKLW-DGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~-~~P~L~-~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
.+.+.++|+.+...++|.+-+-+-|+.|. +-.+ ..|... .|+.. .+ ..|+++|++.++++||.+|--|=++--
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~-i~y~s~~~~~~~~ga~~---~~-i~D~~~l~~~l~e~gIY~IARIv~FkD 86 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGN-ITYDSQVPLAREIGAVK---PY-IKDLKALVKKLKEHGIYPIARIVVFKD 86 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCce-EEecCCCchhhhccccc---cc-ccCHHHHHHHHHHCCCEEEEEEEEecC
Confidence 46789999999999999999999999986 3222 223322 34421 12 479999999999999999999887763
Q ss_pred hHHHHhhCCCCCC---------CCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCccccccccCCHH---HHH
Q 013337 180 ALSWGKGYPSLWP---------SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPH---VSK 247 (445)
Q Consensus 180 ~~a~~~~ypel~~---------~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~~~p~---~~~ 247 (445)
.... +.+|++.- +.....=+||.++++.+.+-+|-.|++++ |-||+... +-..|. .+.
T Consensus 87 ~~la-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRFP~~~~~~~ 156 (316)
T PF13200_consen 87 PVLA-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRFPDEGRLSG 156 (316)
T ss_pred hHHh-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeecCCCCcccc
Confidence 3322 34787732 11122348999999999999999999875 44444322 111121 000
Q ss_pred HH-HHC--CCChhHHHHHHHHHHHHHHHHcCCeE
Q 013337 248 WL-KEH--SMNESQAYQYFVLQAQKIALLHGYEI 278 (445)
Q Consensus 248 ~~-~~~--g~~~~~l~~~F~~~l~~~v~~~G~~~ 278 (445)
.- ... ..+..+....|++.+.+.+++.|..+
T Consensus 157 l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 157 LDYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred cccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 00 000 11123778899999999999988653
No 14
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.08 E-value=0.23 Score=44.09 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHh
Q 013337 106 KNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGK 185 (445)
Q Consensus 106 k~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~ 185 (445)
+++++.|...+.|.+.+..-+..||.+ ||.=. | .....++++=++|+|+-|+++||+|+-=+|.--+.... +
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~~-~--~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~-~ 74 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTKV-G--PRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAA-E 74 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCCC-C--cCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHH-H
Confidence 678999999999999997776666532 33221 2 12344666777999999999999999999998655544 5
Q ss_pred hCCCCC---CCCC----------CCCCCCCCChHHHHHHHHHHHHHhhhcC
Q 013337 186 GYPSLW---PSKD----------CQEPLDVSNEFTFKVIDGILSDFSKVFK 223 (445)
Q Consensus 186 ~ypel~---~~~~----------~~~~Ld~~~~~t~~fl~~ll~E~~~lFp 223 (445)
.|||.+ +++. .-..+|+..+ -.+++...++|+.+.++
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~-Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSP-YREFLLEQIREILDRYD 124 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCcc-HHHHHHHHHHHHHHcCC
Confidence 799974 2221 0113566554 55999999999998776
No 15
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=94.95 E-value=0.069 Score=53.09 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCc
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 177 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~P 177 (445)
+-...+..|++||..|.+++-.+.+ |.||.- .... ........+...+++|||+||+++||.|+-=...-
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~--~~~~----~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYG--WEKD----DDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCG--S--T----TT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----cccccc--cccc----ccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 3467999999999999999998776 778842 0000 01112234667899999999999998887654444
Q ss_pred h---------hhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 178 G---------HALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 178 G---------H~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
+ ++..+++.|.++.-.+..-+=++-.+.++.++..+|+++.++
T Consensus 97 ~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 97 TGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAE 148 (273)
T ss_dssp HTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHH
Confidence 3 233444444444211111122455788899999999988876
No 16
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.54 E-value=2.3 Score=44.84 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=88.4
Q ss_pred CCccceeeee--cCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccc-eeeCCCCCCCc--cCCCCCCCCCHHHHHHH
Q 013337 85 RFSFRGLLID--TSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLWD--GAYSTSERYTMADAAEI 159 (445)
Q Consensus 85 rf~~RGlmLD--~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~fr-le~~~~P~L~~--Gay~~~~~YT~~ei~ei 159 (445)
.=+.||+=|| .++..+.-..+++.+|.+..+.+|++-.-...+ |.- +.+...|.... |...... -.+=+.++
T Consensus 44 ~~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~-G~~lypS~~~p~s~~~~~~~~~~~--g~DpLa~~ 120 (418)
T COG1649 44 PQEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWND-GDALYPSAVLPWSDGLPGVLGVDP--GYDPLAFV 120 (418)
T ss_pred cccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecC-ccccccccccccccCcCcccCCCC--CCChHHHH
Confidence 3577999888 567778899999999999999999988766533 221 23333333220 1000111 12558899
Q ss_pred HHHHHHcCCEEEeecCCchhhH---HHHhhCCCCCCCC---------C---CCCCCCCCChHHHHHHHHHHHHHhhhcC
Q 013337 160 VSYAQKRGINVLAELDVPGHAL---SWGKGYPSLWPSK---------D---CQEPLDVSNEFTFKVIDGILSDFSKVFK 223 (445)
Q Consensus 160 v~yA~~rGI~VIPEID~PGH~~---a~~~~ypel~~~~---------~---~~~~Ld~~~~~t~~fl~~ll~E~~~lFp 223 (445)
|+-|++|||+|+|=++.-.-+- ..-+.+|+--.+. . ..--|||..|++.+|+.+++-|+..-.+
T Consensus 121 I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 121 IAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred HHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 9999999999999776433221 1223344431100 0 1225999999999999999999986544
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=94.18 E-value=0.35 Score=50.01 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccc-eeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~fr-le~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
|.+.+++-|+.|....+|++.++.. +|. +| | ..+.|.-+.+..+++.|+++||.||--+-+...
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P--------~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~ 72 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----P--------EEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAP 72 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----S--------BTTB---HHHHHHHHHHHCTT-EEEEEECTTTS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----C--------CCCeeecHHHHHHHHHHHhccCeEEEEeccccc
Confidence 5688999999999999999997642 232 33 1 245578888999999999999999976654333
Q ss_pred hHHHHhhCCCCCCC---C-----CCCCCCCCCChHHHHHHHHHHHHHhhhcCC
Q 013337 180 ALSWGKGYPSLWPS---K-----DCQEPLDVSNEFTFKVIDGILSDFSKVFKY 224 (445)
Q Consensus 180 ~~a~~~~ypel~~~---~-----~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~ 224 (445)
=..+.+.||+.... + ......|+.+|...+.+..+++.+++-+.+
T Consensus 73 P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~ 125 (374)
T PF02449_consen 73 PAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD 125 (374)
T ss_dssp -HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 34445679987431 1 122357899999999999999999887754
No 18
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.46 E-value=1.3 Score=42.78 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=90.8
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHH
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQK 165 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~ 165 (445)
+.+||+-.. +..-....+.++.|+..++|.+-+++. |..-.+.-|... -..-..+.++++|+.|++
T Consensus 8 v~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~------~~~~~~~~ld~~v~~a~~ 73 (281)
T PF00150_consen 8 VNWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYN------YDETYLARLDRIVDAAQA 73 (281)
T ss_dssp EEEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTS------BTHHHHHHHHHHHHHHHH
T ss_pred EEeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCcc------ccHHHHHHHHHHHHHHHh
Confidence 567887665 444448899999999999999999886 200000011100 001234789999999999
Q ss_pred cCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCC---ccccccccCC
Q 013337 166 RGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGD---EVNTSCWTLT 242 (445)
Q Consensus 166 rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgD---Ev~~~~w~~~ 242 (445)
+||.||..+-.. |..+.. .......+...+.++++++.++.-|...--++|=| |.......
T Consensus 74 ~gi~vild~h~~----------~~w~~~----~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~-- 137 (281)
T PF00150_consen 74 YGIYVILDLHNA----------PGWANG----GDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDD-- 137 (281)
T ss_dssp TT-EEEEEEEES----------TTCSSS----TSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTST--
T ss_pred CCCeEEEEeccC----------cccccc----ccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCc--
Confidence 999999865443 222111 11223455567778888888888873211233432 33221100
Q ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCe
Q 013337 243 PHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYE 277 (445)
Q Consensus 243 p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~ 277 (445)
..+ +....+.+..|..++.+.+++.+..
T Consensus 138 ---~~w----~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 138 ---ANW----NAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp ---TTT----SHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred ---ccc----ccccchhhhhHHHHHHHHHHhcCCc
Confidence 000 0002367788899999999988764
No 19
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=89.18 E-value=0.11 Score=45.33 Aligned_cols=45 Identities=31% Similarity=0.617 Sum_probs=32.1
Q ss_pred EeeCCCccccCccEEEEcC-CeeEEEcCCCCCCCcceeeccccCCc
Q 013337 43 IWPMPLSVSHGHKSLYVGK-DFKIMSQGSKYKDASGILKDGFSRFS 87 (445)
Q Consensus 43 ~~p~p~~~~~g~~~~~~~~-~~~~~~~g~~~~~~~~il~~a~~rf~ 87 (445)
|||+|++++.|+..+.+++ ++.+...+..-.....+|.+|+.||.
T Consensus 1 lWP~P~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~ 46 (128)
T PF14845_consen 1 LWPKPQSISLGSTVFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYL 46 (128)
T ss_dssp -SS--SEEEEECEEEEEECCCEEEEEETTTSTTTHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCceEEEchhhEEEEeCCCCcccHHHHHHHHHHHHH
Confidence 7999999999999999999 79998776511111368888887654
No 20
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.90 E-value=5.7 Score=44.23 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=68.9
Q ss_pred CChHH-HHHHHHHHHHcCCcEEEEEEecC----CccceeeCCCCCCCccCCCCC-CCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 100 QPLPI-IKNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTS-ERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 100 ~p~~~-lk~~Id~Ma~~KlN~Lh~HltD~----q~frle~~~~P~L~~Gay~~~-~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
-+... +.++||.+..+.+|.+++=-.-+ .+|.+....| |+.. .+=|.+|+++||+-|.++||.||-.
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y-------~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGY-------FAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCc-------CcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34444 44668999999999988632210 1111111111 1222 2337899999999999999999998
Q ss_pred cCCchhhHHH---H---hhCCCC-CCCC-------CCCCCCCCCChHHHHHHHHHHHHHhhh
Q 013337 174 LDVPGHALSW---G---KGYPSL-WPSK-------DCQEPLDVSNEFTFKVIDGILSDFSKV 221 (445)
Q Consensus 174 ID~PGH~~a~---~---~~ypel-~~~~-------~~~~~Ld~~~~~t~~fl~~ll~E~~~l 221 (445)
+- +.|+..- + .+.+.. ..++ -....||..+|++.+++.+.+.-.++-
T Consensus 240 ~V-~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~ 300 (633)
T PRK12313 240 WV-PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDE 300 (633)
T ss_pred EC-CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Confidence 74 7787521 1 000000 0000 011247889999999998888777654
No 21
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=86.88 E-value=5.8 Score=43.38 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecC----CccceeeCCCCCCCccCCCCCC-CCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSE-RYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~----q~frle~~~~P~L~~Gay~~~~-~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
..-|.+-||.+..+++|.+++--.-+ .+|.+....| |.... +=|.+|++++|+-|.++||+||-.+-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~-------~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V- 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLP-------YAPHNAYGGPDDLKALVDAAHGLGLGVILDVV- 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCc-------cccccccCCHHHHHHHHHHHHHCCCEEEEEEc-
Confidence 45566667888999999988743211 1111111111 11222 23789999999999999999998874
Q ss_pred chhhHHHHhhCCC---CC---CCCCCCCCCCCCCh---HHHHHHHHHHHHHhh
Q 013337 177 PGHALSWGKGYPS---LW---PSKDCQEPLDVSNE---FTFKVIDGILSDFSK 220 (445)
Q Consensus 177 PGH~~a~~~~ype---l~---~~~~~~~~Ld~~~~---~t~~fl~~ll~E~~~ 220 (445)
+.|+..-....+. .. ....+...+|..++ ++.+++.+.+.-.++
T Consensus 182 ~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~ 234 (542)
T TIGR02402 182 YNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLR 234 (542)
T ss_pred cCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHH
Confidence 5787532111111 11 01123345777777 777777766655553
No 22
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=86.03 E-value=5.9 Score=43.95 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEe-cC---CccceeeCCCCCCCccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 105 IKNVIDSMAYAKLNVLHWHIV-DT---QSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 105 lk~~Id~Ma~~KlN~Lh~Hlt-D~---q~frle~~~~P~L~~Gay~~~~~Y-T~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
+.++||.+..+.+|.+++=-. +. .+|.+....| |.....| |.+|++++|+-|.++||.||-.+ ++.|
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y-------~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~-V~NH 230 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY-------YAPTSRFGTPDDFMYFVDACHQAGIGVILDW-VPGH 230 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-------cccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccC
Confidence 445678899999999886211 10 0122111111 1222233 78999999999999999999887 4678
Q ss_pred hHHH---Hhh---CCCCC---CCC-----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013337 180 ALSW---GKG---YPSLW---PSK-----DCQEPLDVSNEFTFKVIDGILSDFSKVF 222 (445)
Q Consensus 180 ~~a~---~~~---ypel~---~~~-----~~~~~Ld~~~~~t~~fl~~ll~E~~~lF 222 (445)
+..- +.. .|... +.. -....+|..+|++.+++.+.+.-.++-|
T Consensus 231 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey 287 (613)
T TIGR01515 231 FPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY 287 (613)
T ss_pred cCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 7521 111 11110 000 0112478899999999999888777643
No 23
>smart00642 Aamy Alpha-amylase domain.
Probab=85.66 E-value=3.7 Score=37.73 Aligned_cols=74 Identities=24% Similarity=0.225 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCC------C-CCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYST------S-ERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~------~-~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
....|.+-++.++.+++|.+++--.- +++.- ..+...|.. . .+=|.+|++++|+-|+++||+||-.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~------~~~~~-~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIF------ESPQG-YPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcce------eCCCC-CCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 47778888889999999998874211 11100 001011111 1 2227899999999999999999999
Q ss_pred cCCchhhHH
Q 013337 174 LDVPGHALS 182 (445)
Q Consensus 174 ID~PGH~~a 182 (445)
+ +|.|+..
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 7 5677654
No 24
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.61 E-value=9.1 Score=43.34 Aligned_cols=116 Identities=12% Similarity=0.157 Sum_probs=70.4
Q ss_pred CCChHHH-HHHHHHHHHcCCcEEEEEEecCC----ccceeeCCCCCCCccCCCCCCC-CCHHHHHHHHHHHHHcCCEEEe
Q 013337 99 YQPLPII-KNVIDSMAYAKLNVLHWHIVDTQ----SFPLEIPSYPKLWDGAYSTSER-YTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 99 f~p~~~l-k~~Id~Ma~~KlN~Lh~HltD~q----~frle~~~~P~L~~Gay~~~~~-YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+.....| .++|+.+..+.+|.+++--.-.. +|.+.. .|-|+.... =|.+|++++|+.|.++||.||-
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~-------~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQP-------LGLYAPTARHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCC-------CcCCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3443444 46689999999998877432111 111111 122333333 3799999999999999999999
Q ss_pred ecCCchhhHHHHh---hCC--CCC--CCCC-------CCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013337 173 ELDVPGHALSWGK---GYP--SLW--PSKD-------CQEPLDVSNEFTFKVIDGILSDFSKVF 222 (445)
Q Consensus 173 EID~PGH~~a~~~---~yp--el~--~~~~-------~~~~Ld~~~~~t~~fl~~ll~E~~~lF 222 (445)
++- |.|+..-.. .+. .+. +++. ....+|..+|++.+|+-+.+.-..+-|
T Consensus 338 D~V-~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey 400 (730)
T PRK12568 338 DWV-SAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY 400 (730)
T ss_pred Eec-cccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh
Confidence 984 788764211 110 111 0000 011468999999999888777666543
No 25
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=82.35 E-value=44 Score=38.18 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEecC----CccceeeCCCCCCCccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 105 IKNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 105 lk~~Id~Ma~~KlN~Lh~HltD~----q~frle~~~~P~L~~Gay~~~~~Y-T~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
..+.|+.+..+.+|.+++--.-+ .+|-+....| |.....| |.+|++++|+-|.++||.||-.+ ++.|
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~-------fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv-V~nH 324 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNF-------FAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV-VHSH 324 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccC-------cccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 46789999999999988743211 1121111111 1222333 78999999999999999999886 6777
Q ss_pred hHHHH----hhC----CCCCC---CC----CCCCCCCCCChHHHHHHHHHHHHHhhhc-----C------CceEEecCCc
Q 013337 180 ALSWG----KGY----PSLWP---SK----DCQEPLDVSNEFTFKVIDGILSDFSKVF-----K------YKFVHLGGDE 233 (445)
Q Consensus 180 ~~a~~----~~y----pel~~---~~----~~~~~Ld~~~~~t~~fl~~ll~E~~~lF-----p------~~~~HiGgDE 233 (445)
+..-. ..+ +.... .+ .....+|..++++.+||.+.+.-..+-| . --|.|-|-..
T Consensus 325 ~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~ 404 (758)
T PLN02447 325 ASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQM 404 (758)
T ss_pred ccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCccc
Confidence 75311 100 11100 00 0112588899999999998887776543 1 1355655443
Q ss_pred cccccccCCHHHHHHHHHCCCChh-HHHHHHHHHHHHHHHHcCCeEEEecccc
Q 013337 234 VNTSCWTLTPHVSKWLKEHSMNES-QAYQYFVLQAQKIALLHGYEIVNWEETF 285 (445)
Q Consensus 234 v~~~~w~~~p~~~~~~~~~g~~~~-~l~~~F~~~l~~~v~~~G~~~~~W~d~~ 285 (445)
-+...+.. .-|.... +. ..|+..+.+.+++.....+.=.|..
T Consensus 405 ~f~~~~~~---------~~g~~~d~~a-~~fL~~~N~~i~~~~p~~~~IAEd~ 447 (758)
T PLN02447 405 AFTGNYNE---------YFGMATDVDA-VVYLMLANDLLHGLYPEAVTIAEDV 447 (758)
T ss_pred ccccCccc---------ccCCccChHH-HHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 22211211 0111111 22 3677888888877665544444433
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=82.25 E-value=9.6 Score=43.19 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=68.7
Q ss_pred CCChHHHH-HHHHHHHHcCCcEEEEEEecC----CccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 99 YQPLPIIK-NVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 99 f~p~~~lk-~~Id~Ma~~KlN~Lh~HltD~----q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
+.+...|. ++|+.+..+.+|.+++=-.-+ .+|.+....|=.+ ...+=|.+|++++|+-|.++||.||-.
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai------~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAP------TSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCc------CcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34444444 557999999999988643211 1121111111111 223448999999999999999999988
Q ss_pred cCCchhhHHH---HhhC---CCCC-CC---CC----CCCCCCCCChHHHHHHHHHHHHHhhh
Q 013337 174 LDVPGHALSW---GKGY---PSLW-PS---KD----CQEPLDVSNEFTFKVIDGILSDFSKV 221 (445)
Q Consensus 174 ID~PGH~~a~---~~~y---pel~-~~---~~----~~~~Ld~~~~~t~~fl~~ll~E~~~l 221 (445)
+- |.|+..- +..+ +... +. +. ....+|..++++.+++.+.+.-.++-
T Consensus 335 ~V-~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e 395 (726)
T PRK05402 335 WV-PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEE 395 (726)
T ss_pred EC-CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 64 6787421 1111 0000 00 00 01147889999999998887777654
No 27
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=81.33 E-value=6 Score=43.24 Aligned_cols=70 Identities=29% Similarity=0.343 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCC-------CCCHHHHHHHHHHHHHcCCEEEee
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSE-------RYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~-------~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
.+.-|.+-++.++.+++|.+++=-. +++++. ...|.... +=|.+|+++||+.|.++||+||-.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi------~~~~~~----~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD 94 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPF------YVSPQK----DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLD 94 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCc------ccCCCC----CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 5677788889999999999886311 111110 01222222 238899999999999999999988
Q ss_pred cCCchhhH
Q 013337 174 LDVPGHAL 181 (445)
Q Consensus 174 ID~PGH~~ 181 (445)
+ +|.|+.
T Consensus 95 ~-v~NH~~ 101 (543)
T TIGR02403 95 M-VFNHTS 101 (543)
T ss_pred E-Cccccc
Confidence 6 566764
No 28
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=81.23 E-value=8.7 Score=43.29 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCC----------CC---CC--------CCCCCCCCCCCChHHHHH
Q 013337 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYP----------SL---WP--------SKDCQEPLDVSNEFTFKV 210 (445)
Q Consensus 152 T~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~yp----------el---~~--------~~~~~~~Ld~~~~~t~~f 210 (445)
|.+|+|++|+-|.++||+||-.+ ++.|+..-....| .+ .+ ...|...||..+|.+.++
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 68999999999999999999887 4567653211011 00 00 112445789999999999
Q ss_pred HHHHHHHHhhhc
Q 013337 211 IDGILSDFSKVF 222 (445)
Q Consensus 211 l~~ll~E~~~lF 222 (445)
+.+.+.-...-|
T Consensus 322 i~d~l~~W~~e~ 333 (688)
T TIGR02100 322 VMDSLRYWVTEM 333 (688)
T ss_pred HHHHHHHHHHHc
Confidence 988887776543
No 29
>PLN02960 alpha-amylase
Probab=80.71 E-value=12 Score=43.00 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCChHHH-HHHHHHHHHcCCcEEEEEEecC----CccceeeCCCCCCCccCCCCCCC-CCHHHHHHHHHHHHHcCCEEEe
Q 013337 99 YQPLPII-KNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSER-YTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 99 f~p~~~l-k~~Id~Ma~~KlN~Lh~HltD~----q~frle~~~~P~L~~Gay~~~~~-YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+-+...| .+.|+.+..+.+|.+++--.-. .+|-+... +-|+.... =|.+|++.+|+-|.++||.||-
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~-------~yfa~~~~yGtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVT-------NFFAVSSRFGTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcc-------cCCCcccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3454555 4779999999999988753321 11211111 11222222 3789999999999999999998
Q ss_pred ecCCchhhHHH----H---hhCCCCC--C--CC----CCCCCCCCCChHHHHHHHHHHHHHhhh
Q 013337 173 ELDVPGHALSW----G---KGYPSLW--P--SK----DCQEPLDVSNEFTFKVIDGILSDFSKV 221 (445)
Q Consensus 173 EID~PGH~~a~----~---~~ypel~--~--~~----~~~~~Ld~~~~~t~~fl~~ll~E~~~l 221 (445)
.+ +|.|+..- + .+.+.+. . .. -....+|..++++..|+-+.+.-..+-
T Consensus 485 Dv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~E 547 (897)
T PLN02960 485 DI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTE 547 (897)
T ss_pred Ee-cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Confidence 86 56776431 1 1111110 0 00 011247999999999998877666543
No 30
>PRK14705 glycogen branching enzyme; Provisional
Probab=80.59 E-value=12 Score=44.71 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEecC----CccceeeCCCCCCCccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 105 IKNVIDSMAYAKLNVLHWHIVDT----QSFPLEIPSYPKLWDGAYSTSERY-TMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 105 lk~~Id~Ma~~KlN~Lh~HltD~----q~frle~~~~P~L~~Gay~~~~~Y-T~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
.+++||.+..+.+|.+++--.-+ .+|-+... +-|.....| |.+|++.+|+.|.++||.||-.+ +|+|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~-------~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVT-------SYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCcc-------ccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 45678888888999887643211 11211111 112222333 89999999999999999999875 6788
Q ss_pred hHH--H-HhhC---CCCC-CC------CC-CCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013337 180 ALS--W-GKGY---PSLW-PS------KD-CQEPLDVSNEFTFKVIDGILSDFSKVF 222 (445)
Q Consensus 180 ~~a--~-~~~y---pel~-~~------~~-~~~~Ld~~~~~t~~fl~~ll~E~~~lF 222 (445)
+.. + +..+ +-.. .+ .. ....+|..++++.+|+-+.+.-..+-|
T Consensus 840 ~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey 896 (1224)
T PRK14705 840 FPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF 896 (1224)
T ss_pred CCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 732 1 1111 1000 00 00 112478899999999988777776544
No 31
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=80.49 E-value=1.1e+02 Score=34.62 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=103.1
Q ss_pred CCccceeeeecCCCCCC-----hHHHHHHHHHHHHcCCcEEEEEEecC---CccceeeCCCCCCC-ccCCCCCCCCCHHH
Q 013337 85 RFSFRGLLIDTSRHYQP-----LPIIKNVIDSMAYAKLNVLHWHIVDT---QSFPLEIPSYPKLW-DGAYSTSERYTMAD 155 (445)
Q Consensus 85 rf~~RGlmLD~aR~f~p-----~~~lk~~Id~Ma~~KlN~Lh~HltD~---q~frle~~~~P~L~-~Gay~~~~~YT~~e 155 (445)
.-.-|-+|+|.---|-| .+.|..+||.|...++|++-++.--+ -|. ..+.-||.=. -| ...-|++=.
T Consensus 311 ~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~-~~s~yfP~~~lp~---r~d~f~~~a 386 (671)
T PRK14582 311 KSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGL-VKELYFPNRLLPM---RADLFNRVA 386 (671)
T ss_pred CCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcc-ccccccCcccccc---ccCCcCHHH
Confidence 45578889987655533 35688999999999999999887211 111 1222222200 01 112233322
Q ss_pred HHHHHHHHHHcCCEEEeecCCchhhH-----HHHhhCCCCCC---CCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceE
Q 013337 156 AAEIVSYAQKRGINVLAELDVPGHAL-----SWGKGYPSLWP---SKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFV 227 (445)
Q Consensus 156 i~eiv~yA~~rGI~VIPEID~PGH~~-----a~~~~ypel~~---~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~ 227 (445)
+ +.|.++||+|---+.+-+=.. ......+...+ .+.....|||.+|++.++|++|+.|++.-.+-.=|
T Consensus 387 w----~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGi 462 (671)
T PRK14582 387 W----QLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGI 462 (671)
T ss_pred H----HHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence 1 228889999987766654321 00000011111 01112349999999999999999999987666556
Q ss_pred EecCCccccccccCCHHHHHHHHHCCCChh-------------------HHHHHHHHHHHHHHHH
Q 013337 228 HLGGDEVNTSCWTLTPHVSKWLKEHSMNES-------------------QAYQYFVLQAQKIALL 273 (445)
Q Consensus 228 HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~-------------------~l~~~F~~~l~~~v~~ 273 (445)
|+=-|=+-...=+.+|...+..++.|+... +.+..|..++.+.++.
T Consensus 463 lf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~ 527 (671)
T PRK14582 463 LFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKA 527 (671)
T ss_pred EecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665555533322345554444455665321 2234677777777765
No 32
>PRK14706 glycogen branching enzyme; Provisional
Probab=80.02 E-value=14 Score=41.35 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=68.6
Q ss_pred CCChH-HHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCC--C----ccCCCCCCCC-CHHHHHHHHHHHHHcCCEE
Q 013337 99 YQPLP-IIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKL--W----DGAYSTSERY-TMADAAEIVSYAQKRGINV 170 (445)
Q Consensus 99 f~p~~-~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L--~----~Gay~~~~~Y-T~~ei~eiv~yA~~rGI~V 170 (445)
|.+.. .+.++|+.+..+.+|.+++=-. ..+|.- | .+-|+....| |.+|++.+|+-|.++||.|
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv---------~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~V 233 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGV---------MEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGV 233 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccch---------hcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEE
Confidence 44433 3456678888888888775322 112211 1 1112333444 7999999999999999999
Q ss_pred EeecCCchhhHHH---Hh---hCCCC--C-CCC-----CCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013337 171 LAELDVPGHALSW---GK---GYPSL--W-PSK-----DCQEPLDVSNEFTFKVIDGILSDFSKVF 222 (445)
Q Consensus 171 IPEID~PGH~~a~---~~---~ypel--~-~~~-----~~~~~Ld~~~~~t~~fl~~ll~E~~~lF 222 (445)
|.++ ++.|+..- +. +.|-. . +.. -....+|..++++.+|+.+.+.-..+-|
T Consensus 234 ilD~-v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~ 298 (639)
T PRK14706 234 ILDW-VPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF 298 (639)
T ss_pred EEEe-cccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 9887 56776421 11 11110 0 000 0111478899999999988877776543
No 33
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=79.62 E-value=7.1 Score=42.84 Aligned_cols=185 Identities=15% Similarity=0.203 Sum_probs=96.3
Q ss_pred eeccccCCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEE---EecCCccceee----CCCCCCCccCCCCCCCC
Q 013337 79 LKDGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWH---IVDTQSFPLEI----PSYPKLWDGAYSTSERY 151 (445)
Q Consensus 79 l~~a~~rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~H---ltD~q~frle~----~~~P~L~~Gay~~~~~Y 151 (445)
+..++-|||--|++=|-.-. .+.+..++.|+.|+.+++|.+|.. -..++-++-.. +.++.+ .+...
T Consensus 95 VSsdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~------~~r~i 167 (559)
T PF13199_consen 95 VSSDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDW------ANRQI 167 (559)
T ss_dssp E-SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TT------T--EE
T ss_pred ecCCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhh------cCCEe
Confidence 45567788888887762222 345789999999999999999853 22222222111 122222 13456
Q ss_pred CHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHh--hCCCCC----CCC-C-----------C-CCCCCCCChHHHHHHH
Q 013337 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGK--GYPSLW----PSK-D-----------C-QEPLDVSNEFTFKVID 212 (445)
Q Consensus 152 T~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~--~ypel~----~~~-~-----------~-~~~Ld~~~~~t~~fl~ 212 (445)
+.+-|++.|+.|+++|+..++=.-+-|=...... ..|+-. ... . . .--+||+|+.=.+.|-
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~ 247 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYII 247 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHH
Confidence 7899999999999999999997655544332211 112210 000 0 0 1247899999888888
Q ss_pred HHHHHHhhhcCCceEEe---cCCccccccccCCHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 013337 213 GILSDFSKVFKYKFVHL---GGDEVNTSCWTLTPHVSKWLKEHSM-NESQAYQYFVLQAQKIALLHGYEIVNWEET 284 (445)
Q Consensus 213 ~ll~E~~~lFp~~~~Hi---GgDEv~~~~w~~~p~~~~~~~~~g~-~~~~l~~~F~~~l~~~v~~~G~~~~~W~d~ 284 (445)
+=+.++.+.|...=||| | +-... ++.+.. .. ...+.|..|++.+.+.+ ....++-|.+
T Consensus 248 ~q~~~~~~~~gFDG~hlDq~G-~~~~~--~d~~G~--------~i~~l~~~y~~Fi~~~K~~~---~~k~lv~N~V 309 (559)
T PF13199_consen 248 NQMNKAIQNFGFDGWHLDQLG-NRGTV--YDYDGN--------KIYDLSDGYASFINAMKEAL---PDKYLVFNAV 309 (559)
T ss_dssp HHHHHHHHHHT--EEEEE-S---EEEE--GGTT-----------GGECHHHHHHHHHHHHHHS---TTSEEEEB-G
T ss_pred HHHHHHHHccCCceEeeeccC-CCCcc--ccCCCC--------CchhhHHHHHHHHHHHHHhC---CCCceeeecc
Confidence 88888888888777776 3 11111 111110 01 22478888888766644 2333554544
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=79.23 E-value=6.8 Score=43.46 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=75.2
Q ss_pred eeeecCCC--CCC-hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCC--C----ccCCCCCCCC-CHHHHHHHH
Q 013337 91 LLIDTSRH--YQP-LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKL--W----DGAYSTSERY-TMADAAEIV 160 (445)
Q Consensus 91 lmLD~aR~--f~p-~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L--~----~Gay~~~~~Y-T~~ei~eiv 160 (445)
+|+=+-+. +.. .+-..++|+.++...+|.+.+ +.+..||.= | .|-|++...| |.+|++.+|
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IEL---------MPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIEL---------MPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEE---------cccccCCCCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 45544444 333 555678899999999997765 334455542 2 2345555556 899999999
Q ss_pred HHHHHcCCEEEeecCCchhhHHHHhhCCCCC---------CCC-----CCCCCCCCCChHHHHHHHHHHHHHhhh
Q 013337 161 SYAQKRGINVLAELDVPGHALSWGKGYPSLW---------PSK-----DCQEPLDVSNEFTFKVIDGILSDFSKV 221 (445)
Q Consensus 161 ~yA~~rGI~VIPEID~PGH~~a~~~~ypel~---------~~~-----~~~~~Ld~~~~~t~~fl~~ll~E~~~l 221 (445)
+.|-++||.||-.. +|||...-...-..+. |.. -.....|-.++++..|+-+-.--..+-
T Consensus 221 D~aH~~GIgViLD~-V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~ 294 (628)
T COG0296 221 DAAHQAGIGVILDW-VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEE 294 (628)
T ss_pred HHHHHcCCEEEEEe-cCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999775 7888765221111110 100 011234556899999876654444443
No 35
>PRK03705 glycogen debranching enzyme; Provisional
Probab=78.65 E-value=13 Score=41.58 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=66.1
Q ss_pred HHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-c------c-----CCCCCCCCC------HHHHHHHHHHHHHcCCE
Q 013337 108 VIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-D------G-----AYSTSERYT------MADAAEIVSYAQKRGIN 169 (445)
Q Consensus 108 ~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~------G-----ay~~~~~YT------~~ei~eiv~yA~~rGI~ 169 (445)
.||.+..+.+|.++|=-.-+ ..+.+++. . | -|.....|. .+|+|++|+-|.++||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~------~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQ------FASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCccc------CCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 47888999999988732211 11111110 0 1 012233343 47999999999999999
Q ss_pred EEeecCCchhhHHHHhhCCC----------C---CC------CCCCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013337 170 VLAELDVPGHALSWGKGYPS----------L---WP------SKDCQEPLDVSNEFTFKVIDGILSDFSKVF 222 (445)
Q Consensus 170 VIPEID~PGH~~a~~~~ype----------l---~~------~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lF 222 (445)
||-.+ ++.|+.......|. . .. ...|...||..+|.+.+++.+.++-..+-|
T Consensus 258 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~ 328 (658)
T PRK03705 258 VILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETC 328 (658)
T ss_pred EEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHh
Confidence 99987 45676531111111 0 00 112445789999999999999888877654
No 36
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=74.06 E-value=34 Score=34.22 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=67.9
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCC-CCCCCCHHHHHHHHHHHHHcCCEEEeecC-
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYS-TSERYTMADAAEIVSYAQKRGINVLAELD- 175 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~-~~~~YT~~ei~eiv~yA~~rGI~VIPEID- 175 (445)
.+.+-+.++++++.+...++..=.+.+.++-. ..+- + |.++ ....+ .|.+++++..+++|++|+.-++
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~-----~~~~--~-~~f~~d~~~F--Pd~~~~i~~l~~~G~~~~~~~~P 88 (308)
T cd06593 19 FYYDEEEVNEFADGMRERNLPCDVIHLDCFWM-----KEFQ--W-CDFEFDPDRF--PDPEGMLSRLKEKGFKVCLWINP 88 (308)
T ss_pred cCCCHHHHHHHHHHHHHcCCCeeEEEEecccc-----cCCc--c-eeeEECcccC--CCHHHHHHHHHHCCCeEEEEecC
Confidence 35788999999999999998876666654311 0000 0 0000 01122 1578999999999999999765
Q ss_pred -----CchhhHHHHhhC----CCC-------CCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 176 -----VPGHALSWGKGY----PSL-------WPSKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 176 -----~PGH~~a~~~~y----pel-------~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
.+-+.+...+++ ++- ++ .....+|.+||++.++..+.++++.+
T Consensus 89 ~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 89 YIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQ--PGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred CCCCCchhHHHHHHCCeEEECCCCCeeeecccC--CCcccccCCCHHHHHHHHHHHHHHHH
Confidence 221212111110 100 01 11235899999999999999998765
No 37
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.53 E-value=25 Score=35.53 Aligned_cols=127 Identities=10% Similarity=0.127 Sum_probs=71.0
Q ss_pred cCCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecC-CccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHH
Q 013337 84 SRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDT-QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSY 162 (445)
Q Consensus 84 ~rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~-q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~y 162 (445)
|++++ |++.-. ..|.+-+.+.++|+.+...++-+=.+++.++ .+-+-....+-..+ + ....|. |.+++++.
T Consensus 7 P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~---w-d~~~FP--dp~~mi~~ 78 (317)
T cd06598 7 PRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLD---W-DRKAFP--DPAGMIAD 78 (317)
T ss_pred chHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeE---e-ccccCC--CHHHHHHH
Confidence 44555 555322 2345789999999999998887544444322 00000000010111 0 112232 56889999
Q ss_pred HHHcCCEEEeecCCc------hhhHHHHhhC---------C---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 163 AQKRGINVLAELDVP------GHALSWGKGY---------P---SLWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 163 A~~rGI~VIPEID~P------GH~~a~~~~y---------p---el~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
-+++||+|++-|+-- -..+...+++ | ..++ .....+|.+||++.+...+.++++.+
T Consensus 79 L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~~ 152 (317)
T cd06598 79 LAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWF--GNTGLIDWFDPAAQAWFHDNYKKLID 152 (317)
T ss_pred HHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccC--CCccccCCCCHHHHHHHHHHHHHhhh
Confidence 999999999988621 1111111122 0 0011 11236899999999999999988743
No 38
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=72.87 E-value=23 Score=42.67 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCcEEEEEEecCCccceeeCCCCC--C---C----ccCCCCCCCC---CHHHHHHHHHHHHHcCCEEEeec
Q 013337 107 NVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPK--L---W----DGAYSTSERY---TMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 107 ~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~--L---~----~Gay~~~~~Y---T~~ei~eiv~yA~~rGI~VIPEI 174 (445)
..|+.+..+.+|.+++=-.- .+.-+ ...+. + | .+-+.....| |.+|++++|+-|.++||+||-.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~--~~~~~-~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIF--ASVDE-HHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCcc--ccCcc-cccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 45678888999988763211 01000 00000 0 1 0011223344 79999999999999999999886
Q ss_pred CCchhhHHHHhhCCCC-------------CC--------CCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 175 DVPGHALSWGKGYPSL-------------WP--------SKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 175 D~PGH~~a~~~~ypel-------------~~--------~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
++.|+..-....|.+ .+ ...|.+.+|..++.+.+++.+.++-..+
T Consensus 268 -V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 268 -VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred -ccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 566765321111111 00 0123446777788888888777765554
No 39
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=72.54 E-value=18 Score=38.80 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCC----------------CHHHHHHHHHHHHH
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERY----------------TMADAAEIVSYAQK 165 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~Y----------------T~~ei~eiv~yA~~ 165 (445)
-..|.+-+|.++.+.+|.+.+=-. +++++. . +.-.|....+| |.+|+++||+-|.+
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~------~~~~~~-~-~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~ 92 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPA------YKGTSG-G-YDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHE 92 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC------ccCCCC-C-CCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHH
Confidence 345777788999999999875221 111110 0 00012222222 89999999999999
Q ss_pred cCCEEEeecCCchhhH
Q 013337 166 RGINVLAELDVPGHAL 181 (445)
Q Consensus 166 rGI~VIPEID~PGH~~ 181 (445)
|||.||-.+ ++.|+.
T Consensus 93 ~Gi~vi~D~-V~NH~~ 107 (479)
T PRK09441 93 NGIKVYADV-VLNHKA 107 (479)
T ss_pred CCCEEEEEE-Cccccc
Confidence 999999887 677876
No 40
>PLN02784 alpha-amylase
Probab=72.30 E-value=20 Score=41.34 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCCCC-CCCHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTSE-RYTMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~~~-~YT~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
-..|++-++.++.+.+|.+.+--.- ++.+.-.-. ..-|..+. +=|++|++++|+-|+++||.||-.| ++.|
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~------~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi-ViNH 592 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPT------ESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA-VLNH 592 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCC------CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE-Cccc
Confidence 4678888999999999998874320 111000000 00112222 3389999999999999999999987 6777
Q ss_pred hHH
Q 013337 180 ALS 182 (445)
Q Consensus 180 ~~a 182 (445)
+..
T Consensus 593 ~ag 595 (894)
T PLN02784 593 RCA 595 (894)
T ss_pred ccc
Confidence 754
No 41
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=71.86 E-value=6.3 Score=41.03 Aligned_cols=112 Identities=22% Similarity=0.329 Sum_probs=66.9
Q ss_pred CCCCCCCccee--eccccCCccceee--eecCCCCCC---hHHHHHHHHHHHHcCCcEEEEEE-----------------
Q 013337 69 GSKYKDASGIL--KDGFSRFSFRGLL--IDTSRHYQP---LPIIKNVIDSMAYAKLNVLHWHI----------------- 124 (445)
Q Consensus 69 g~~~~~~~~il--~~a~~rf~~RGlm--LD~aR~f~p---~~~lk~~Id~Ma~~KlN~Lh~Hl----------------- 124 (445)
++.|+++..++ ++|...|-+|.+= |+.---|+. .+.|.-.|+.+|.-+-|.|--|-
T Consensus 96 ~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR 175 (447)
T KOG0259|consen 96 GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVR 175 (447)
T ss_pred CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeE
Confidence 34577544444 4455455555431 111111222 46788889999999999884331
Q ss_pred ----ecCCccceeeCCCCCCC----------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhH
Q 013337 125 ----VDTQSFPLEIPSYPKLW----------DGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHAL 181 (445)
Q Consensus 125 ----tD~q~frle~~~~P~L~----------~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~ 181 (445)
--+++|++.++..-.|. +-....+..||++-+++|.+.|+++||-||-. ++-||+-
T Consensus 176 ~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 176 YYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred eecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 11234444333322222 01123467899999999999999999999975 5677765
No 42
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=71.47 E-value=34 Score=37.96 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecC------------CccceeeCCCCCCCccCCCCC---CCCCHHHHHHHHHHHHHcCC
Q 013337 104 IIKNVIDSMAYAKLNVLHWHIVDT------------QSFPLEIPSYPKLWDGAYSTS---ERYTMADAAEIVSYAQKRGI 168 (445)
Q Consensus 104 ~lk~~Id~Ma~~KlN~Lh~HltD~------------q~frle~~~~P~L~~Gay~~~---~~YT~~ei~eiv~yA~~rGI 168 (445)
.|...|+.+..+.+|.+++=-.-+ .+|.+....|=.+ .++|..+ +.-+.+|+|++|+-|.++||
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~-~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP-EGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc-ChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 455678999999999988732211 0111111111000 0111110 11125899999999999999
Q ss_pred EEEeecCCchhhHH-----HHhhCCCCC----C------CCCCCCCCCCCChHHHHHHHHHHHHHhhh
Q 013337 169 NVLAELDVPGHALS-----WGKGYPSLW----P------SKDCQEPLDVSNEFTFKVIDGILSDFSKV 221 (445)
Q Consensus 169 ~VIPEID~PGH~~a-----~~~~ypel~----~------~~~~~~~Ld~~~~~t~~fl~~ll~E~~~l 221 (445)
+||-.+ ++.|+.. +....|+.. + ...|...++..+|++.+++.+.+.-.++-
T Consensus 244 ~VilDv-V~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e 310 (605)
T TIGR02104 244 RVIMDV-VYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE 310 (605)
T ss_pred EEEEEE-EcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH
Confidence 999887 4567742 111112211 0 11223356777899999888877766653
No 43
>PLN02361 alpha-amylase
Probab=69.61 E-value=17 Score=38.25 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCCC-CCCCHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYSTS-ERYTMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~~-~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
-..|++-++.++.+.++.+.+=-. .++.++-.-. ..-|.-+ .+=|++|++++|+-|+++||.||-.+ ++-|
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P~------~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~-V~NH 100 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPPP------SQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI-VINH 100 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC------CcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE-cccc
Confidence 356777888999999999876321 1111110000 0011122 23389999999999999999999987 4467
Q ss_pred h
Q 013337 180 A 180 (445)
Q Consensus 180 ~ 180 (445)
+
T Consensus 101 ~ 101 (401)
T PLN02361 101 R 101 (401)
T ss_pred c
Confidence 6
No 44
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=67.49 E-value=18 Score=36.68 Aligned_cols=162 Identities=16% Similarity=0.254 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCH---HHHHHHHHHHHHcCCEEEeecCC
Q 013337 100 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTM---ADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 100 ~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~---~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
.+.+.=+.+|+-|+.+|||+.--=--|| |.+.. .-++.|+. +++++|++.|++.||+.+=-|-
T Consensus 12 Ws~e~R~~l~~f~~~~kmN~YiYAPKdD----------pyhr~---~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~ais- 77 (306)
T PF07555_consen 12 WSHEDRLDLIRFLGRYKMNTYIYAPKDD----------PYHRS---KWREPYPEEELAELKELADAAKANGVDFVYAIS- 77 (306)
T ss_dssp --HHHHHHHHHHHHHTT--EEEE--TT-----------TTTTT---TTTS---HHHHHHHHHHHHHHHHTT-EEEEEEB-
T ss_pred CCHHHHHHHHHHHHHcCCceEEECCCCC----------hHHHh---hhcccCCHHHHHHHHHHHHHHHHcCCEEEEEEC-
Confidence 4577889999999999999876332233 33321 12455765 5678899999999999986651
Q ss_pred chhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCccccccccCCHHHHHHHHHCCC-C
Q 013337 177 PGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSM-N 255 (445)
Q Consensus 177 PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~-~ 255 (445)
||.. ++.+.++.++.|..=++++.++ .-+.|=|=.|.+...-|... ++.. .
T Consensus 78 Pg~~-------------------~~~s~~~d~~~L~~K~~ql~~l-Gvr~FailfDDi~~~~~~~~--------~~~~~~ 129 (306)
T PF07555_consen 78 PGLD-------------------ICYSSEEDFEALKAKFDQLYDL-GVRSFAILFDDIDGDLWHCD--------KDDFNS 129 (306)
T ss_dssp GTTT---------------------TSHHHHHHHHHHHHHHHHCT-T--EEEEE-TS-SSC--TTT--------TTT-SC
T ss_pred cccc-------------------cccCcHHHHHHHHHHHHHHHhc-CCCEEEEeecCCCCcccccc--------ccccch
Confidence 2221 2234666677666666666654 22445555666553211111 1111 2
Q ss_pred hhHHHHHHHHHHHHHHHHcC--CeEE------Eecccc-----cccCCCCCCCeEEEecCCC
Q 013337 256 ESQAYQYFVLQAQKIALLHG--YEIV------NWEETF-----NNFGNKLSPKTVVHNWLGG 304 (445)
Q Consensus 256 ~~~l~~~F~~~l~~~v~~~G--~~~~------~W~d~~-----~~~~~~l~~~~ii~~W~~~ 304 (445)
..+.+..+++++.+.+.+.. ..++ .+++.. ..++..||+++.|. |.|+
T Consensus 130 ~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~~Yl~~l~~~L~~~i~i~-WTG~ 190 (306)
T PF07555_consen 130 LAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASPEYLRTLGEQLDPDIQIF-WTGP 190 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCCHHHHHHHHHS-TTSEEE-E-CS
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCChHHHHHHHhhCCCCCEEE-EcCC
Confidence 34778889999977665432 2221 222222 12235788888775 7775
No 45
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=67.31 E-value=86 Score=37.48 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCEEEeecCCchhhHHH---HhhCCCCC----C-----CCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 153 MADAAEIVSYAQKRGINVLAELDVPGHALSW---GKGYPSLW----P-----SKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 153 ~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~---~~~ypel~----~-----~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
.+|+|++|+-|.++||+||-.+ ++.|+... ....|... . ...|...++..++.+.++|.+.+.-.++
T Consensus 554 i~EfK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999876 56777532 11123221 0 1123345777788888888777776665
Q ss_pred hc
Q 013337 221 VF 222 (445)
Q Consensus 221 lF 222 (445)
-|
T Consensus 633 ey 634 (1111)
T TIGR02102 633 EF 634 (1111)
T ss_pred hc
Confidence 43
No 46
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=67.22 E-value=19 Score=40.50 Aligned_cols=107 Identities=19% Similarity=0.293 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCC-----ccceeeCCCCCCCccCCCCCCCC-CHH------HHHHHHHHHHHcCCEEEe
Q 013337 105 IKNVIDSMAYAKLNVLHWHIVDTQ-----SFPLEIPSYPKLWDGAYSTSERY-TMA------DAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 105 lk~~Id~Ma~~KlN~Lh~HltD~q-----~frle~~~~P~L~~Gay~~~~~Y-T~~------ei~eiv~yA~~rGI~VIP 172 (445)
.++.+.-+..+.+|.+||--+-.. +|.+....| +++..+| |.+ |+|++|+-|..+||+|+-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF-------FapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlL 329 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF-------FAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLL 329 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe-------ecccccccCCCcccchHHHHHHHHHHhhCCcEEeh
Confidence 445577788889999998654333 222111100 1122222 445 999999999999999998
Q ss_pred ecCCchhhHHHHhhCCC--C-----------CC----CCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 173 ELDVPGHALSWGKGYPS--L-----------WP----SKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 173 EID~PGH~~a~~~~ype--l-----------~~----~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
+| +-.|+.. ....|. + .+ ...|...+|-..+.+.+||-+=++-...
T Consensus 330 DV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVt 392 (757)
T KOG0470|consen 330 DV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVT 392 (757)
T ss_pred hh-hhhhccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 87 5567665 222221 1 11 1235667899999999998775554443
No 47
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.99 E-value=22 Score=39.42 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCCCC--hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCC-C-CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 97 RHYQP--LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAY-S-TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 97 R~f~p--~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay-~-~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+.|+- +.-|.+-||.++.+.+|.+.+--. ++++++-.-+..-| . ...+=|.+|+++||+-|.+|||+||-
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pi------f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVil 244 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPI------FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVL 244 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCc------ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 34553 788888899999999999886321 12222111100000 0 11223789999999999999999998
Q ss_pred ecCCchhhH
Q 013337 173 ELDVPGHAL 181 (445)
Q Consensus 173 EID~PGH~~ 181 (445)
.+ ++.|++
T Consensus 245 D~-V~NH~~ 252 (598)
T PRK10785 245 DG-VFNHTG 252 (598)
T ss_pred EE-CCCcCC
Confidence 86 456665
No 48
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=66.97 E-value=9 Score=37.15 Aligned_cols=69 Identities=29% Similarity=0.403 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCC-------CCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYS-------TSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~-------~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
..-|++-||.++.+++|.+++-- .+++ |.-..| |. ...+=|.+|+++||+-|.++||.||-.+
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~P------i~~~---~~~~~g-Y~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSP------IFES---PNGYHG-YDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-------EES---SSSTTT-TSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhhHHHHHcCCCceeccc------cccc---cccccc-ccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 34567778999999999988631 1121 110011 11 1122279999999999999999999776
Q ss_pred CCchhhH
Q 013337 175 DVPGHAL 181 (445)
Q Consensus 175 D~PGH~~ 181 (445)
- +.|+.
T Consensus 73 V-~NH~~ 78 (316)
T PF00128_consen 73 V-PNHTS 78 (316)
T ss_dssp E-TSEEE
T ss_pred e-ccccc
Confidence 3 34654
No 49
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=66.01 E-value=69 Score=33.69 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=77.9
Q ss_pred ccCCccceeeeecCCCC-CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHH
Q 013337 83 FSRFSFRGLLIDTSRHY-QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVS 161 (445)
Q Consensus 83 ~~rf~~RGlmLD~aR~f-~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~ 161 (445)
.|++.+ |+++ +|.. .+.+.++++|+.|...++-.=.+++.++-.. .+...+ + ....+. +.+++++
T Consensus 25 pP~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-----~~~~f~---~-d~~~FP--d~~~~~~ 90 (441)
T PF01055_consen 25 PPRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-----GYGDFT---W-DPERFP--DPKQMID 90 (441)
T ss_dssp --GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-----TTBTT----B--TTTTT--THHHHHH
T ss_pred Cchhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceeccccccc-----cccccc---c-cccccc--chHHHHH
Confidence 467887 9988 4544 5799999999999999999777776654211 111211 0 111222 8899999
Q ss_pred HHHHcCCEEEeecCC----chh---hHHHHhhCCCCCCCCCC-----------CCCCCCCChHHHHHHHHHHHHHhhhcC
Q 013337 162 YAQKRGINVLAELDV----PGH---ALSWGKGYPSLWPSKDC-----------QEPLDVSNEFTFKVIDGILSDFSKVFK 223 (445)
Q Consensus 162 yA~~rGI~VIPEID~----PGH---~~a~~~~ypel~~~~~~-----------~~~Ld~~~~~t~~fl~~ll~E~~~lFp 223 (445)
..+++||++++-++- ... .-.-.+..--+..+... ...+|.++|++.+...+.++++.+.+.
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G 170 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG 170 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST
T ss_pred hHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC
Confidence 999999999976543 222 11111111111111111 235899999999999999999887755
Q ss_pred CceEEecC
Q 013337 224 YKFVHLGG 231 (445)
Q Consensus 224 ~~~~HiGg 231 (445)
-..+=+=.
T Consensus 171 vdg~w~D~ 178 (441)
T PF01055_consen 171 VDGWWLDF 178 (441)
T ss_dssp -SEEEEES
T ss_pred CceEEeec
Confidence 44444433
No 50
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=65.91 E-value=1.1e+02 Score=34.51 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEE-EEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec-CCch
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHW-HIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL-DVPG 178 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~-HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI-D~PG 178 (445)
|-+.+++-|+.|...++|+.-. .+ +|.+-- |+. |.|. +|.-|.. +++.|.+-||.||--- -+.+
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~f----aW~~~e---P~e--G~fd----f~~~D~~-~l~~a~~~Gl~vil~t~P~g~ 93 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYF----AWNLHE---PEE--GKFD----FTWLDEI-FLERAYKAGLYVILRTGPTGA 93 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeE----EeeccC---ccc--cccC----cccchHH-HHHHHHhcCceEEEecCCCCC
Confidence 5688999999999999998765 43 232211 222 4443 3344444 7999999999999765 4567
Q ss_pred hhHHHHhhCCCCCC---C-----CCCCCCCCCCChHHHHHHHHHHHHHhhh-cC----CceEEecCCcccc-ccccC-CH
Q 013337 179 HALSWGKGYPSLWP---S-----KDCQEPLDVSNEFTFKVIDGILSDFSKV-FK----YKFVHLGGDEVNT-SCWTL-TP 243 (445)
Q Consensus 179 H~~a~~~~ypel~~---~-----~~~~~~Ld~~~~~t~~fl~~ll~E~~~l-Fp----~~~~HiGgDEv~~-~~w~~-~p 243 (445)
+.....+.|||.-. + ...-+.+|++++.-.+.+..|++.+++- .. ---+|+-- |+.. .||-. |+
T Consensus 94 ~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~~~~~~~~~~ 172 (673)
T COG1874 94 PPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGGHPCYCDYCQ 172 (673)
T ss_pred CchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCCccccccccH
Confidence 77777789999731 1 2233579999997778888888888775 42 24566654 6655 45522 33
Q ss_pred HH-HHHHHHC
Q 013337 244 HV-SKWLKEH 252 (445)
Q Consensus 244 ~~-~~~~~~~ 252 (445)
.+ +.|+++.
T Consensus 173 ~~f~~wLk~~ 182 (673)
T COG1874 173 AAFRLWLKKG 182 (673)
T ss_pred HHHHHHHHhC
Confidence 32 3355553
No 51
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=64.80 E-value=28 Score=40.08 Aligned_cols=76 Identities=11% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEe----cCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 99 YQPLPIIKNVIDSMAYAKLNVLHWHIV----DTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 99 f~p~~~lk~~Id~Ma~~KlN~Lh~Hlt----D~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
=++.+.+++.|+.++.+++|.+++=-. +...+.+.+..|-.+ ...+=|.+|++++++-|+++||.||-.|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~i------dp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEI------NPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCc------CCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 457889999999999999998765211 000011111111111 1122279999999999999999999886
Q ss_pred CCchhhH
Q 013337 175 DVPGHAL 181 (445)
Q Consensus 175 D~PGH~~ 181 (445)
+|.|+.
T Consensus 86 -VpNH~a 91 (825)
T TIGR02401 86 -VPNHMA 91 (825)
T ss_pred -cccccc
Confidence 577776
No 52
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=64.77 E-value=27 Score=40.41 Aligned_cols=76 Identities=9% Similarity=0.120 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEec----CCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 99 YQPLPIIKNVIDSMAYAKLNVLHWHIVD----TQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 99 f~p~~~lk~~Id~Ma~~KlN~Lh~HltD----~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
=++.+.+.+.++.++.+++|.+.+--.- ...+.+.+..|-.+ ....=|.+|++++++-|+++||.||-.|
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~i------dp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRI------NPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCc------CCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3678899999999999999987753210 00111111111111 1112278999999999999999999887
Q ss_pred CCchhhH
Q 013337 175 DVPGHAL 181 (445)
Q Consensus 175 D~PGH~~ 181 (445)
+|.|+.
T Consensus 90 -V~NH~~ 95 (879)
T PRK14511 90 -VPNHMA 95 (879)
T ss_pred -cccccc
Confidence 566665
No 53
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=64.62 E-value=35 Score=35.88 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeC-CCCCCCccCCCC-CCCCCHHHHHHHHHHHHHcCCEE----Eee
Q 013337 100 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIP-SYPKLWDGAYST-SERYTMADAAEIVSYAQKRGINV----LAE 173 (445)
Q Consensus 100 ~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~-~~P~L~~Gay~~-~~~YT~~ei~eiv~yA~~rGI~V----IPE 173 (445)
+.-+.|+++++.++.+.++.|.+ |.||--.-. ....+ |-+.. ...+ .+-++.|+++.+++|+.. -||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~r~~d~~~~--GdW~~~~~kF-P~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI----DDGWFGGRDDDNAGL--GDWEPDPKKF-PNGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-----SSSBCTESTTTSTT--SBECBBTTTS-TTHHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE----cCccccccCCCcccC--CceeEChhhh-CCcHHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999999999998875 346632110 11111 21111 1112 124999999999999874 344
Q ss_pred cCCchhhHHHHhhCCCCCCC------CCCC--CCCCCCChHHHHHHHHHHHHHhhhcCCceEEe
Q 013337 174 LDVPGHALSWGKGYPSLWPS------KDCQ--EPLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 229 (445)
Q Consensus 174 ID~PGH~~a~~~~ypel~~~------~~~~--~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~Hi 229 (445)
+=.|+ ..+.+.||+.... .... -.||+++|++.+++.+.+..+..-..-.||=+
T Consensus 128 ~v~~~--S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~ 189 (394)
T PF02065_consen 128 MVSPD--SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW 189 (394)
T ss_dssp EEESS--SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred cccch--hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 33333 3344567765211 0111 25999999999999999888765555455544
No 54
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.11 E-value=47 Score=33.39 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=66.7
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCC-CCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYST-SERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~-~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
..++-+.|+++++.|..+++..=.+|+-|+ |- +.+ |.+.- ...+. +.+++++.-+++|+++++-|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~~~-----g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~- 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---TCY-----GDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH- 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---ccC-----CccccChhhCC--CHHHHHHHHHHCCCeEEEEEC-
Confidence 356789999999999999987555555442 20 111 22211 12333 588999999999999998665
Q ss_pred chhhH---HHHh--hCCCCC--CCC----------CCCCCCCCCChHHHHHHHHHHHHHh
Q 013337 177 PGHAL---SWGK--GYPSLW--PSK----------DCQEPLDVSNEFTFKVIDGILSDFS 219 (445)
Q Consensus 177 PGH~~---a~~~--~ypel~--~~~----------~~~~~Ld~~~~~t~~fl~~ll~E~~ 219 (445)
|.-.. ...+ ...-+. +++ .....+|.+||++.+...+.++++.
T Consensus 92 P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 92 PFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred CeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 21110 0100 000010 000 1123589999999999999998887
No 55
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=63.50 E-value=29 Score=37.81 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCC-ccCCCC------CC-CCCHHHHHHHHHHHHHcCCEEEe
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLW-DGAYST------SE-RYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~-~Gay~~------~~-~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+.-|.+-+|.++.+.+|.+++=- -|+.-. ...|.. .. +=|.+|+++||+-|.++||.||-
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~P-----------i~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vil 94 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLP-----------FFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVII 94 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECC-----------CcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEE
Confidence 477788889999999999987632 111111 111211 11 22789999999999999999998
Q ss_pred ecCCchhhH
Q 013337 173 ELDVPGHAL 181 (445)
Q Consensus 173 EID~PGH~~ 181 (445)
.+ ++.|+.
T Consensus 95 D~-V~NH~s 102 (539)
T TIGR02456 95 DL-VLNHTS 102 (539)
T ss_pred Ee-ccCcCC
Confidence 76 566664
No 56
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=62.83 E-value=13 Score=34.68 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccc---eeeCCCCCCCccCC--------------CCCCCCCHHHHHHHHHHH
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP---LEIPSYPKLWDGAY--------------STSERYTMADAAEIVSYA 163 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~fr---le~~~~P~L~~Gay--------------~~~~~YT~~ei~eiv~yA 163 (445)
+.+.+.++++.+...++..+.+.+.+....+ .-.+.||++..|+- ..+..-+.....++++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~~ 93 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKAA 93 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHH
Confidence 3666777777777777777777766543221 11123554421110 001112223346899999
Q ss_pred HHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcC-CceEEecCC
Q 013337 164 QKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFK-YKFVHLGGD 232 (445)
Q Consensus 164 ~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp-~~~~HiGgD 232 (445)
+.+|+.+||++.+|.++....+.-.++. .+.+..+...+ .++.+...|| -+.+=+||=
T Consensus 94 ~~~~~~~i~gv~t~~e~~~A~~~Gad~i-------~~~p~~~~g~~----~~~~l~~~~~~~p~~a~GGI 152 (190)
T cd00452 94 NRAGIPLLPGVATPTEIMQALELGADIV-------KLFPAEAVGPA----YIKALKGPFPQVRFMPTGGV 152 (190)
T ss_pred HHcCCcEECCcCCHHHHHHHHHCCCCEE-------EEcCCcccCHH----HHHHHHhhCCCCeEEEeCCC
Confidence 9999999999999988776654322221 02233333334 4455566776 588888885
No 57
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=62.78 E-value=28 Score=38.16 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCC-------CCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTS-------ERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~-------~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
.+.-|.+-||.++.+++|.+++=-. +++ |... ..|... .+=|.+|+++||+-|.++||.||-.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~------~~~---~~~~-~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD 100 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPF------YVS---PQVD-NGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILD 100 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCC------CCC---CCCC-CCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4677778889999999999886321 011 1111 112222 2238899999999999999999988
Q ss_pred cCCchhhH
Q 013337 174 LDVPGHAL 181 (445)
Q Consensus 174 ID~PGH~~ 181 (445)
+ ++.|+.
T Consensus 101 ~-V~NH~s 107 (551)
T PRK10933 101 M-VFNHTS 107 (551)
T ss_pred E-CCCCcc
Confidence 7 556655
No 58
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=62.60 E-value=31 Score=34.57 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=43.0
Q ss_pred ccceeeeecCC-CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHH
Q 013337 87 SFRGLLIDTSR-HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQK 165 (445)
Q Consensus 87 ~~RGlmLD~aR-~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~ 165 (445)
+.+-+-|.... ..+.++.|++.|+....+.-+.=-+-|+-. . ++ ..+..||.+|+++|.++|++
T Consensus 92 G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t--------~--~~-----~GG~~~s~~el~ai~~~a~~ 156 (290)
T PF01212_consen 92 GAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENT--------T--EL-----AGGTVYSLEELRAISELARE 156 (290)
T ss_dssp TCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESS--------B--TT-----TTSB---HHHHHHHHHHHHH
T ss_pred CcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEec--------C--cC-----CCCeeCCHHHHHHHHHHHHh
Confidence 34445556666 778999999999988773333222222211 0 11 13567999999999999999
Q ss_pred cCCEEEe
Q 013337 166 RGINVLA 172 (445)
Q Consensus 166 rGI~VIP 172 (445)
+||.|.-
T Consensus 157 ~gl~lhm 163 (290)
T PF01212_consen 157 HGLPLHM 163 (290)
T ss_dssp HT-EEEE
T ss_pred CceEEEE
Confidence 9997743
No 59
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=61.93 E-value=12 Score=36.66 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
.++.+++.|+.++..+.+.+-.|.... +... ....-....+-+++|+++|+..||+|.-|-
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~----------~~~~---~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSY----------LGQS---KEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCC----------CCCC---HHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 377899999999999999877765321 1100 000112446889999999999999999884
No 60
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=59.75 E-value=33 Score=31.13 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
++.+++.|+.++.++...+.+|... + ...+... ....-....+-+++|.++|+++||+|..|-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~----~~~~~~~---~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---Y----PSGPEDD---TEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---E----SSSTTSS---HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---c----ccccCCC---HHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 7899999999999999999999642 0 0111110 000112445789999999999999999993
No 61
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=59.20 E-value=71 Score=31.93 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCC-ccceeeCCCCCCC-ccCCCCCCCCC------HHHHHHHHHHHHHcCCEEEe
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQ-SFPLEIPSYPKLW-DGAYSTSERYT------MADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q-~frle~~~~P~L~-~Gay~~~~~YT------~~ei~eiv~yA~~rGI~VIP 172 (445)
..+..+.+++..+..++|+++..+.-.. +..-. ..+|... .+.-....-+| -+.+..+|++|.++||.+-
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~- 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAA- 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEE-
Confidence 3578899999999999999999886431 21111 1233322 00000001122 2678999999999999984
Q ss_pred ecCCchhh---HHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCc
Q 013337 173 ELDVPGHA---LSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDE 233 (445)
Q Consensus 173 EID~PGH~---~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDE 233 (445)
-|=+=|+. +.|..+.. ..+.+....+++=|.+-+.+ ||...+-+|||.
T Consensus 106 lv~~wg~~~~~~~Wg~~~~------------~m~~e~~~~Y~~yv~~Ry~~-~~NviW~l~gd~ 156 (289)
T PF13204_consen 106 LVPFWGCPYVPGTWGFGPN------------IMPPENAERYGRYVVARYGA-YPNVIWILGGDY 156 (289)
T ss_dssp EESS-HHHHH-------TT------------SS-HHHHHHHHHHHHHHHTT--SSEEEEEESSS
T ss_pred EEEEECCcccccccccccc------------CCCHHHHHHHHHHHHHHHhc-CCCCEEEecCcc
Confidence 22222222 23333211 12345555666666666554 677888899999
No 62
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=57.33 E-value=28 Score=35.86 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 97 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 97 R~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
+..++.+.++++|+.++..+. .+++++. ++.+...|+.+|+++++++|+.+ .|.|
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~G---------------------GEPll~~~~~~il~~~~~~g~~~--~i~T 97 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSG---------------------GEPLLRKDLEELVAHARELGLYT--NLIT 97 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEEC---------------------CccCCchhHHHHHHHHHHcCCcE--EEEC
Confidence 446789999999999987664 4455543 34455567889999999999765 4666
Q ss_pred chh
Q 013337 177 PGH 179 (445)
Q Consensus 177 PGH 179 (445)
=|.
T Consensus 98 NG~ 100 (378)
T PRK05301 98 SGV 100 (378)
T ss_pred CCc
Confidence 665
No 63
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.08 E-value=56 Score=31.16 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccc---eeeCCCCCCCccCCCCCCCCCHHHH-----------------HHHH
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFP---LEIPSYPKLWDGAYSTSERYTMADA-----------------AEIV 160 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~fr---le~~~~P~L~~Gay~~~~~YT~~ei-----------------~eiv 160 (445)
+.+...++.+.+...++..+-+=++...... --.+.||++..|+ +..+|.+|+ .+++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v~ 94 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPELA 94 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEE---EeCCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 6888999999999999999888776655432 1235688876554 223344433 4788
Q ss_pred HHHHHcCCEEEeecCCchhhHHHHh
Q 013337 161 SYAQKRGINVLAELDVPGHALSWGK 185 (445)
Q Consensus 161 ~yA~~rGI~VIPEID~PGH~~a~~~ 185 (445)
++|+++||-++|-+=+|.......+
T Consensus 95 ~~~~~~~i~~iPG~~TptEi~~A~~ 119 (204)
T TIGR01182 95 KHAQDHGIPIIPGVATPSEIMLALE 119 (204)
T ss_pred HHHHHcCCcEECCCCCHHHHHHHHH
Confidence 9999999999999999999876553
No 64
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=56.87 E-value=25 Score=35.87 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 97 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 97 R~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
+..++.+.++++|+.+...+. ..++++. ++.+-..|+.+|+++|+++|+.+ .|.|
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~--~~v~~~G---------------------GEPll~~~~~~ii~~~~~~g~~~--~l~T 88 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGV--LQLHFSG---------------------GEPLARPDLVELVAHARRLGLYT--NLIT 88 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCC--cEEEEeC---------------------ccccccccHHHHHHHHHHcCCeE--EEEe
Confidence 456889999999999987664 4455543 23334457889999999999865 4666
Q ss_pred chhh
Q 013337 177 PGHA 180 (445)
Q Consensus 177 PGH~ 180 (445)
-|..
T Consensus 89 NG~l 92 (358)
T TIGR02109 89 SGVG 92 (358)
T ss_pred CCcc
Confidence 6753
No 65
>PLN00196 alpha-amylase; Provisional
Probab=56.26 E-value=51 Score=35.06 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCc-cCCCCC--CCCCHHHHHHHHHHHHHcCCEEEeecCCch
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWD-GAYSTS--ERYTMADAAEIVSYAQKRGINVLAELDVPG 178 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~-Gay~~~--~~YT~~ei~eiv~yA~~rGI~VIPEID~PG 178 (445)
...|++-++.++.+.++.+.+=-. .++.++-.-+. .-|.-+ .+=|++|++++|+-|+++||.||-.+ ++.
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~------~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv-V~N 115 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPP------SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI-VIN 115 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC------CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE-Ccc
Confidence 456888899999999999876321 11111100000 002222 23489999999999999999999886 567
Q ss_pred hhHH
Q 013337 179 HALS 182 (445)
Q Consensus 179 H~~a 182 (445)
|+.+
T Consensus 116 H~~~ 119 (428)
T PLN00196 116 HRTA 119 (428)
T ss_pred Cccc
Confidence 7653
No 66
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.68 E-value=45 Score=31.98 Aligned_cols=119 Identities=9% Similarity=0.029 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccce---eeCCC---CCCCccCCCCCCCCCHHHHH-----------------
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL---EIPSY---PKLWDGAYSTSERYTMADAA----------------- 157 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frl---e~~~~---P~L~~Gay~~~~~YT~~ei~----------------- 157 (445)
+.+...++++.|..-++.++-+=++....... -...| |++..|+ +..+|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGa---GTV~~~~~~~~a~~aGA~FivsP~~~~ 99 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGA---GTVLDAVTARLAILAGAQFIVSPSFNR 99 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEee---eeCCCHHHHHHHHHcCCCEEECCCCCH
Confidence 78999999999999999999988876553321 11245 5666554 3456666665
Q ss_pred HHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcC-CceEEecCCc
Q 013337 158 EIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFK-YKFVHLGGDE 233 (445)
Q Consensus 158 eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp-~~~~HiGgDE 233 (445)
+++++|+++||-+||-.-+|.-.......-.++-. +-|...-..++ ++.+...|| -+++=+||=.
T Consensus 100 ~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vk-------lFPa~~~G~~~----ik~l~~~~p~ip~~atGGI~ 165 (213)
T PRK06552 100 ETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVK-------LFPGSTLGPSF----IKAIKGPLPQVNVMVTGGVN 165 (213)
T ss_pred HHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEE-------ECCcccCCHHH----HHHHhhhCCCCEEEEECCCC
Confidence 78999999999999999999888766542222200 11111112233 445566787 4888888854
No 67
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=55.43 E-value=8.8 Score=37.02 Aligned_cols=77 Identities=10% Similarity=-0.088 Sum_probs=49.4
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHH
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQK 165 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~ 165 (445)
...||++++..+..-..+.+++.|+.++..+...+..+.. ..-......+. .....+.+++++++|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g----~~~~~~~~~~~--------~~~~~~~l~~l~~~A~~ 134 (254)
T TIGR03234 67 AGERGIACLPGREEEFREGVALAIAYARALGCPQVNCLAG----KRPAGVSPEEA--------RATLVENLRYAADALDR 134 (254)
T ss_pred cCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECcC----CCCCCCCHHHH--------HHHHHHHHHHHHHHHHh
Confidence 3356666655544333688999999999999998876531 10000000000 01234679999999999
Q ss_pred cCCEEEeec
Q 013337 166 RGINVLAEL 174 (445)
Q Consensus 166 rGI~VIPEI 174 (445)
+||.+.-|-
T Consensus 135 ~gi~l~lE~ 143 (254)
T TIGR03234 135 IGLTLLIEP 143 (254)
T ss_pred cCCEEEEEE
Confidence 999999994
No 68
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=55.29 E-value=33 Score=38.38 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCcEEEEEEecCC----ccceeeCCCCCCCccCCC------CCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 107 NVIDSMAYAKLNVLHWHIVDTQ----SFPLEIPSYPKLWDGAYS------TSERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 107 ~~Id~Ma~~KlN~Lh~HltD~q----~frle~~~~P~L~~Gay~------~~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
++-|.+....++.+|+=-.-.. ||.+ -|.. .|-|. ...+=|.+|++++++-|.+|||.||-++ +
T Consensus 78 ~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~----tP~~-D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl-V 151 (688)
T TIGR02455 78 ALWKALSEIGVQGIHNGPIKLSGGIRGREF----TPSI-DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI-I 151 (688)
T ss_pred HHHHHHHHhCCCEEEeCcceecccccccCC----CCCC-CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-C
Confidence 5567777889999886321100 0000 0111 22232 2234499999999999999999999776 6
Q ss_pred chhhH
Q 013337 177 PGHAL 181 (445)
Q Consensus 177 PGH~~ 181 (445)
|+|+.
T Consensus 152 pnHTs 156 (688)
T TIGR02455 152 PAHTG 156 (688)
T ss_pred CCCCC
Confidence 78876
No 69
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.42 E-value=84 Score=29.92 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccce-e--eCCCCCCCccCCCCCCCCCHHHH-----------------HHHH
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL-E--IPSYPKLWDGAYSTSERYTMADA-----------------AEIV 160 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frl-e--~~~~P~L~~Gay~~~~~YT~~ei-----------------~eiv 160 (445)
+.+...++++.|..-++..+-+=++..+.+.. + ...||++..|+ +..+|.+++ .+++
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~vi 90 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGA---GTILNAKQFEDAAKAGSRFIVSPGTTQELL 90 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEee---EeCcCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 68899999999999999999988887665531 1 24688887665 334555555 4688
Q ss_pred HHHHHcCCEEEeecCCchhhHHHH
Q 013337 161 SYAQKRGINVLAELDVPGHALSWG 184 (445)
Q Consensus 161 ~yA~~rGI~VIPEID~PGH~~a~~ 184 (445)
++|+++||-+||-+=+|.-.....
T Consensus 91 ~~a~~~~i~~iPG~~TptEi~~A~ 114 (201)
T PRK06015 91 AAANDSDVPLLPGAATPSEVMALR 114 (201)
T ss_pred HHHHHcCCCEeCCCCCHHHHHHHH
Confidence 999999999999999999876554
No 70
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=54.35 E-value=1.6e+02 Score=28.56 Aligned_cols=135 Identities=10% Similarity=0.157 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHH
Q 013337 103 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALS 182 (445)
Q Consensus 103 ~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a 182 (445)
-.+.+.|+.++.+++..+-+.+.+.. ..+ ....+|.+++++|.+.++++||+|. .+.+++|..
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~---------~~~------~~~~~~~~~~~~l~~~l~~~Gl~i~-~~~~~~~~~- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESD---------ERL------ARLDWSKEERLSLVKAIYETGVRIP-SMCLSGHRR- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcc---------ccc------ccccCCHHHHHHHHHHHHHcCCCce-EEecccccC-
Confidence 36888999999999999988654311 111 1123788999999999999999876 344444431
Q ss_pred HHhhCCCCCCCCCCCCCCCC-CChHHHHHHHHHHHHHhhhcCCceEEecCCccccccccCCHHHHHHHHHCCCChhHHHH
Q 013337 183 WGKGYPSLWPSKDCQEPLDV-SNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQ 261 (445)
Q Consensus 183 ~~~~ypel~~~~~~~~~Ld~-~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~ 261 (445)
+| +. .-|+ ..+++.+.++.+++ ++..+..+++-++|--.... ...+. ..+...
T Consensus 79 ----~~-~~-------~~d~~~r~~~~~~~~~~i~-~a~~lG~~~v~~~~~~~~~~--~~~~~-----------~~~~~~ 132 (284)
T PRK13210 79 ----FP-FG-------SRDPATRERALEIMKKAIR-LAQDLGIRTIQLAGYDVYYE--EKSEE-----------TRQRFI 132 (284)
T ss_pred ----cC-CC-------CCCHHHHHHHHHHHHHHHH-HHHHhCCCEEEECCcccccc--cccHH-----------HHHHHH
Confidence 11 10 0011 12345555666663 44455556666543211100 00111 013344
Q ss_pred HHHHHHHHHHHHcCCeEEE
Q 013337 262 YFVLQAQKIALLHGYEIVN 280 (445)
Q Consensus 262 ~F~~~l~~~v~~~G~~~~~ 280 (445)
..++.+.++++++|.+..+
T Consensus 133 ~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 133 EGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHhCCEEEE
Confidence 5566778888899986543
No 71
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=53.30 E-value=1.2e+02 Score=30.75 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecC---
Q 013337 99 YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELD--- 175 (445)
Q Consensus 99 f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID--- 175 (445)
|.+-+.++++++.+..+++..=.+++..+ | .+.+-..+ + ....+ .|.+++++..+++||+|++-|+
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~---~~~~~~f~---~-d~~~F--Pdp~~~i~~l~~~g~k~~~~~~P~i 88 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIH--Y---MDSYRLFT---W-DPYRF--PEPKKLIDELHKRNVKLVTIVDPGI 88 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChh--h---hCCCCcee---e-chhcC--CCHHHHHHHHHHCCCEEEEEeeccc
Confidence 45788999999999999988666666432 1 01111111 0 11122 2668999999999999997664
Q ss_pred -CchhhHHHHhhCC-C-C-------------CCCCCCCCCCCCCChHHHHHHHHHHHHHh
Q 013337 176 -VPGHALSWGKGYP-S-L-------------WPSKDCQEPLDVSNEFTFKVIDGILSDFS 219 (445)
Q Consensus 176 -~PGH~~a~~~~yp-e-l-------------~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~ 219 (445)
...+.....++.. . + ++. ....+|.+||++.+...+.++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G--~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 89 RVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPG--TTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred cCCCCChHHHHHHHCCEEEECCCCCeEEEeecCC--CccccCCCChHHHHHHHHHHHHHh
Confidence 1111111211110 0 1 111 112589999999999999998876
No 72
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=52.63 E-value=2e+02 Score=29.41 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhH
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHAL 181 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~ 181 (445)
.+..+|=|..|..++.|++..+-.|. .+ ..++ ..+.-++-||=||-.++.|+.
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRVY~vdp-----------~~-----------nHd~---CM~~~~~aGIYvi~Dl~~p~~-- 104 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRVYSVDP-----------SK-----------NHDE---CMSAFADAGIYVILDLNTPNG-- 104 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEES---T-----------TS-------------HH---HHHHHHHTT-EEEEES-BTTB--
T ss_pred HHHHHHhHHHHHHcCCCEEEEEEeCC-----------CC-----------CHHH---HHHHHHhCCCEEEEecCCCCc--
Confidence 56688889999999999999876662 22 2333 444455679999999999943
Q ss_pred HHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCccccccccCCHHHHHHHHHCCCChhHHHH
Q 013337 182 SWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQ 261 (445)
Q Consensus 182 a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~ 261 (445)
++-+..|.-+ =+..-++-...+++.++. ++...=-.-|-|+.... .+ .......+
T Consensus 105 sI~r~~P~~s-----------w~~~l~~~~~~vid~fa~-Y~N~LgFf~GNEVin~~--~~-----------t~aap~vK 159 (314)
T PF03198_consen 105 SINRSDPAPS-----------WNTDLLDRYFAVIDAFAK-YDNTLGFFAGNEVINDA--SN-----------TNAAPYVK 159 (314)
T ss_dssp S--TTS-----------------HHHHHHHHHHHHHHTT--TTEEEEEEEESSS-ST--T------------GGGHHHHH
T ss_pred cccCCCCcCC-----------CCHHHHHHHHHHHHHhcc-CCceEEEEecceeecCC--CC-----------cccHHHHH
Confidence 3444444110 033444555555555543 45544445566775431 01 11123345
Q ss_pred HHHHHHHHHHHHcCCe--EEEe
Q 013337 262 YFVLQAQKIALLHGYE--IVNW 281 (445)
Q Consensus 262 ~F~~~l~~~v~~~G~~--~~~W 281 (445)
.+++.+..+++++|.+ |+..
T Consensus 160 AavRD~K~Yi~~~~~R~IPVGY 181 (314)
T PF03198_consen 160 AAVRDMKAYIKSKGYRSIPVGY 181 (314)
T ss_dssp HHHHHHHHHHHHSSS----EEE
T ss_pred HHHHHHHHHHHhcCCCCCceeE
Confidence 6777888888888875 4554
No 73
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=51.12 E-value=33 Score=33.93 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEe
Q 013337 150 RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHL 229 (445)
Q Consensus 150 ~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~Hi 229 (445)
.++.+++++|+++|+++|++++-|+..--++.-.++.-+.+- -+|-.|=.|+++--+...++++..|...+=|
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI-------GINnRdL~tf~vdl~~t~~la~~~p~~~~~I 211 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKII-------GINNRDLTTLEVDLETTEKLAPLIPKDVILI 211 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE-------EEeCCCcchheecHHHHHHHHhhCCCCcEEE
Confidence 689999999999999999999999988888876666444441 1222333444444455667788888765544
Q ss_pred c
Q 013337 230 G 230 (445)
Q Consensus 230 G 230 (445)
.
T Consensus 212 s 212 (254)
T COG0134 212 S 212 (254)
T ss_pred e
Confidence 3
No 74
>PRK01060 endonuclease IV; Provisional
Probab=50.51 E-value=72 Score=31.07 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=45.2
Q ss_pred eeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 013337 90 GLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGIN 169 (445)
Q Consensus 90 GlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~ 169 (445)
|.|..+.+. +.+.|+.++...+..+.+-+.... .+ ....+|.++++++-+.++++||+
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~-----------~~-----~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQ-----------QW-----KRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCC-----------CC-----cCCCCCHHHHHHHHHHHHHcCCC
Confidence 566665544 889999999999999998654322 11 12348999999999999999999
Q ss_pred E
Q 013337 170 V 170 (445)
Q Consensus 170 V 170 (445)
+
T Consensus 63 ~ 63 (281)
T PRK01060 63 P 63 (281)
T ss_pred C
Confidence 5
No 75
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=48.93 E-value=40 Score=32.53 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=53.6
Q ss_pred CCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHH
Q 013337 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQ 164 (445)
Q Consensus 85 rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~ 164 (445)
-|..=|+++|+...- +.+.|.++++....+..+.+-.-. . -..++|++|+.+|.+|++
T Consensus 131 L~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv--------------N-------l~~YLt~eei~el~~~i~ 188 (216)
T TIGR01866 131 IIKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI--------------N-------SGAFLTKDELAELQKFIS 188 (216)
T ss_pred HHHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE--------------c-------HHHhCCHHHHHHHHHHHH
Confidence 467789999999887 899999999988888777665422 1 246799999999999999
Q ss_pred HcCCEEEe
Q 013337 165 KRGINVLA 172 (445)
Q Consensus 165 ~rGI~VIP 172 (445)
...+.|+=
T Consensus 189 ~~~~~vll 196 (216)
T TIGR01866 189 YTKLTVLF 196 (216)
T ss_pred HhcccEEE
Confidence 99998874
No 76
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=48.09 E-value=85 Score=28.07 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=52.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013337 143 GAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVF 222 (445)
Q Consensus 143 Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lF 222 (445)
|.+|-=..+|.+||+.-|+|+-..|=.+--|++-++|.. ..|-.+|.-+ .++.+++. .++.+ ++|-.+.+
T Consensus 6 eTfSyLPpLTdeqI~kQI~Y~i~~GW~p~iEft~~~~~~---~~YW~MWkLP----MFg~tD~~--~Vl~E-i~~Crkay 75 (138)
T CHL00130 6 GTFSFLPDLTDQQIEKQIQYAISKGWALNVEWTDDPHPR---NSYWELWGLP----LFDVKDPA--AVMFE-INECRKQK 75 (138)
T ss_pred ceeccCCCCCHHHHHHHHHHHHhcCCeEEEEecCCCCcC---ccEEeeeCCc----cCCCCCHH--HHHHH-HHHHHHHC
Confidence 334444568999999999999999999999999999975 2355555322 23333332 22222 23345679
Q ss_pred CCceEEecC
Q 013337 223 KYKFVHLGG 231 (445)
Q Consensus 223 p~~~~HiGg 231 (445)
|+.||-|=|
T Consensus 76 P~~yIRl~g 84 (138)
T CHL00130 76 PNGYIKVNA 84 (138)
T ss_pred CCcEEEEEE
Confidence 999887644
No 77
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=48.08 E-value=1.4e+02 Score=31.68 Aligned_cols=89 Identities=20% Similarity=0.292 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCcc-----ceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHH-HHcCCEEEeec
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSF-----PLEIPSYPKLWDGAYSTSERYTMADAAEIVSYA-QKRGINVLAEL 174 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~f-----rle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA-~~rGI~VIPEI 174 (445)
|++...+.++..+..++|.+|+ +--|-. ++.+...=++...-+....-++.++++++|.-+ +++||-.|-.|
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHf--tPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHF--TPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEe--cccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 4678888889999999999875 322110 111111001111111234458889999999998 47999999875
Q ss_pred CCchhh---HHHHhhCCCCCC
Q 013337 175 DVPGHA---LSWGKGYPSLWP 192 (445)
Q Consensus 175 D~PGH~---~a~~~~ypel~~ 192 (445)
+.-|+ ..|+..|||.+-
T Consensus 98 -V~NHtA~nS~Wl~eHPEagY 117 (423)
T PF14701_consen 98 -VLNHTANNSPWLREHPEAGY 117 (423)
T ss_pred -eeccCcCCChHHHhCccccc
Confidence 34455 469999999753
No 78
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=47.77 E-value=13 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=22.1
Q ss_pred eeEeeCCCccccCccEEEEcCCeeEEEcC
Q 013337 41 VRIWPMPLSVSHGHKSLYVGKDFKIMSQG 69 (445)
Q Consensus 41 ~~~~p~p~~~~~g~~~~~~~~~~~~~~~g 69 (445)
+.|+|.|++++.+++.+.++..++|....
T Consensus 2 ~~iiP~P~~~~~~~g~~~l~~~~~i~~~~ 30 (124)
T PF02838_consen 2 PSIIPQPQSITLTGGTFTLPQSTKIVVDD 30 (124)
T ss_dssp ---SS--SEEEEEEEEEEETTTEEEEETT
T ss_pred CcEEccccEEEECCCEEEECCCcEEEECC
Confidence 67999999999999999999999998865
No 79
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=47.38 E-value=32 Score=33.86 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=71.1
Q ss_pred cCCccceeeeecCCCCCC--hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCC---CCCCCCCHHHHHH
Q 013337 84 SRFSFRGLLIDTSRHYQP--LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAY---STSERYTMADAAE 158 (445)
Q Consensus 84 ~rf~~RGlmLD~aR~f~p--~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay---~~~~~YT~~ei~e 158 (445)
...+--++-+.|=++||. ++.|+++-... ++=+|.=-+.=+ ++++.. -...|+- ---..++++++++
T Consensus 71 ~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v---~~PvL~KDFIid---~~QI~e--a~~~GADavLLI~~~L~~~~l~~ 142 (247)
T PRK13957 71 ETLGASAISVLTDQSYFGGSLEDLKSVSSEL---KIPVLRKDFILD---EIQIRE--ARAFGASAILLIVRILTPSQIKS 142 (247)
T ss_pred HHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc---CCCEEeccccCC---HHHHHH--HHHcCCCEEEeEHhhCCHHHHHH
Confidence 355666778888888774 77777654432 222222111000 000000 0001220 0124589999999
Q ss_pred HHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceE
Q 013337 159 IVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFV 227 (445)
Q Consensus 159 iv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~ 227 (445)
++++|.+.|++++-|+-...-....+..-+++- .+|-.|-.|+++--+...++++.+|...+
T Consensus 143 l~~~a~~lGle~LVEVh~~~El~~a~~~ga~ii-------GINnRdL~t~~vd~~~~~~L~~~ip~~~~ 204 (247)
T PRK13957 143 FLKHASSLGMDVLVEVHTEDEAKLALDCGAEII-------GINTRDLDTFQIHQNLVEEVAAFLPPNIV 204 (247)
T ss_pred HHHHHHHcCCceEEEECCHHHHHHHHhCCCCEE-------EEeCCCCccceECHHHHHHHHhhCCCCcE
Confidence 999999999999999988888776666555441 02222333333333444556777775443
No 80
>PLN03244 alpha-amylase; Provisional
Probab=46.15 E-value=45 Score=38.24 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHH-------hhCCCCC--CCC------CCCCCCCCCChHHHHHHHHH
Q 013337 150 RYTMADAAEIVSYAQKRGINVLAELDVPGHALSWG-------KGYPSLW--PSK------DCQEPLDVSNEFTFKVIDGI 214 (445)
Q Consensus 150 ~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~-------~~ypel~--~~~------~~~~~Ld~~~~~t~~fl~~l 214 (445)
+=|.+|++.+|+-|.++||.||-.+ ++.|+..-. .+-+.+. ... -....+|..++++..|+-+.
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsn 515 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISN 515 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHH
Confidence 3489999999999999999999887 478875311 1112111 000 01135889999999999988
Q ss_pred HHHHhhhc
Q 013337 215 LSDFSKVF 222 (445)
Q Consensus 215 l~E~~~lF 222 (445)
+.-.++-|
T Consensus 516 a~yWleEy 523 (872)
T PLN03244 516 LNWWITEY 523 (872)
T ss_pred HHHHHHHh
Confidence 87776543
No 81
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=46.05 E-value=53 Score=34.12 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEE--EEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 013337 101 PLPIIKNVIDSMAYAKLNVLH--WHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELD 175 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh--~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID 175 (445)
+.+..++.|+.|+.+++..+- +|+.++ ...-..+++++|+++|+++|++||..|+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~--------------------~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPED--------------------DPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCC--------------------CHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 688999999999999998653 443221 1124578999999999999999999885
No 82
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=45.85 E-value=63 Score=40.18 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCC-------CCCCHHHHHHHHHHHHHcCCEEE
Q 013337 99 YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTS-------ERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 99 f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~-------~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
-++.+.+.+.|+.++.+.+|.+.+ +- +- ++-|.-. ..|.-. .+=|.++++.|++-|+++||.||
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~l--sP-----i~-~a~~gs~-hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vi 824 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYA--SP-----IL-KARPGST-HGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQL 824 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEE--CC-----Cc-CCCCCCC-CCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999997664 21 10 0011111 112211 22379999999999999999999
Q ss_pred eecCCchhhH
Q 013337 172 AELDVPGHAL 181 (445)
Q Consensus 172 PEID~PGH~~ 181 (445)
-.| +|.|+.
T Consensus 825 lDi-V~NH~~ 833 (1693)
T PRK14507 825 LDI-VPNHMG 833 (1693)
T ss_pred EEe-cccccC
Confidence 887 678886
No 83
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=45.41 E-value=38 Score=35.86 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=52.7
Q ss_pred ccceeeeecCCCC---CCh---HHHHHHHHHHHH-cCC-cEEEEEEecCCcccee--eCCCCCCCccCCCCCCCCCHHHH
Q 013337 87 SFRGLLIDTSRHY---QPL---PIIKNVIDSMAY-AKL-NVLHWHIVDTQSFPLE--IPSYPKLWDGAYSTSERYTMADA 156 (445)
Q Consensus 87 ~~RGlmLD~aR~f---~p~---~~lk~~Id~Ma~-~Kl-N~Lh~HltD~q~frle--~~~~P~L~~Gay~~~~~YT~~ei 156 (445)
+.=|+.||++.-| +.+ +.+.++++.+-. ..+ ..-|+||.|+.+- +- .+.+-.| +.|..-.+-+
T Consensus 301 ~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~-~GS~~DRH~~I------G~G~Ig~~~f 373 (413)
T PTZ00372 301 SRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSD-LGSGLDRHENI------GKGKLGMETF 373 (413)
T ss_pred CCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCc-cCCCcccccCc------CCCCcChHHH
Confidence 3459999999766 433 455566655532 223 3557788887431 11 1223333 3466788999
Q ss_pred HHHHHHHHHcCCEEEeec
Q 013337 157 AEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 157 ~eiv~yA~~rGI~VIPEI 174 (445)
+.|+...+-.+|-+|-|.
T Consensus 374 ~~l~~~~~~~~iP~ILET 391 (413)
T PTZ00372 374 KFIMNSKYFKNIPIILET 391 (413)
T ss_pred HHHHhChhhCCCeEEEeC
Confidence 999999999999999883
No 84
>PRK10658 putative alpha-glucosidase; Provisional
Probab=45.37 E-value=1.9e+02 Score=32.55 Aligned_cols=126 Identities=18% Similarity=0.268 Sum_probs=73.5
Q ss_pred cCCccceeeeecCCCC-CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHH
Q 013337 84 SRFSFRGLLIDTSRHY-QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSY 162 (445)
Q Consensus 84 ~rf~~RGlmLD~aR~f-~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~y 162 (445)
|++++ |+++-.++.. ++-+.+.++++.|...++-.=.+|+... |- .--.+...+ + ....+. |.+++++.
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~--w~-~~~~~~~f~---w-d~~~FP--dp~~mi~~ 333 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCF--WM-KEFQWCDFE---W-DPRTFP--DPEGMLKR 333 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchh--hh-cCCceeeeE---E-ChhhCC--CHHHHHHH
Confidence 56666 8887664332 4677899999999999988555555332 10 000000110 0 011121 45788999
Q ss_pred HHHcCCEEEeecCC---chhh---HHHHhhC----CC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhh
Q 013337 163 AQKRGINVLAELDV---PGHA---LSWGKGY----PS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDFSKV 221 (445)
Q Consensus 163 A~~rGI~VIPEID~---PGH~---~a~~~~y----pe-------l~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~l 221 (445)
-+++||+|+.-|+- +.+. ++.-++| ++ .|+. ....+|.+||++.+...+.++++.++
T Consensus 334 L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g--~~~~~Dftnp~ar~W~~~~~~~l~d~ 407 (665)
T PRK10658 334 LKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQP--GMAIVDFTNPDACKWYADKLKGLLDM 407 (665)
T ss_pred HHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeeeeecCC--CceeecCCCHHHHHHHHHHHHHHHhc
Confidence 99999999977652 1111 1111111 10 1111 12358999999999999988887653
No 85
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.15 E-value=1.9e+02 Score=29.20 Aligned_cols=110 Identities=10% Similarity=0.058 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCc
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 177 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~P 177 (445)
.|.+.+.++++++.+..+++..=.+++..+ -|. -..+..++ + ....+ .+.+++|+..+++||+||+-|+ |
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~~--~~~~~~f~---~-d~~~F--Pdp~~mi~~L~~~G~kv~~~i~-P 88 (319)
T cd06591 19 RYKTQEELLDVAKEYRKRGIPLDVIVQDWF-YWP--KQGWGEWK---F-DPERF--PDPKAMVRELHEMNAELMISIW-P 88 (319)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEEech-hhc--CCCceeEE---E-ChhhC--CCHHHHHHHHHHCCCEEEEEec-C
Confidence 346899999999999999888655555322 110 00000111 0 01112 2578999999999999998665 4
Q ss_pred hhh---HHHHhhCC-CC-CCC--C--------CCCCCCCCCChHHHHHHHHHHHH
Q 013337 178 GHA---LSWGKGYP-SL-WPS--K--------DCQEPLDVSNEFTFKVIDGILSD 217 (445)
Q Consensus 178 GH~---~a~~~~yp-el-~~~--~--------~~~~~Ld~~~~~t~~fl~~ll~E 217 (445)
+=. ....+... .+ ..+ . .....+|.+||++.+...+.+++
T Consensus 89 ~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 89 TFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred CcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 311 11111000 00 000 0 11236999999999976665554
No 86
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=45.07 E-value=3.6e+02 Score=27.57 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=66.6
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecC-----CccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDT-----QSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~-----q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+|.+-+.++++++.+...++..=.+++..+ ..|.+.-+.||.. ..+++|+.-+++||+|++
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp--------------~~~~mi~~L~~~G~k~~~ 84 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGL--------------KMPEFVDELHANGQHYVP 84 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCc--------------cHHHHHHHHHHCCCEEEE
Confidence 356789999999999999988655555322 1222222223332 338999999999999999
Q ss_pred ecCCchhhH------------HHHhhC--------C---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 173 ELDVPGHAL------------SWGKGY--------P---SLWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 173 EID~PGH~~------------a~~~~y--------p---el~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
-|+ |+-.. +..++| | ..++ .....+|.+||++.+...+.++++..
T Consensus 85 ~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~--g~~~~~Dftnp~a~~ww~~~~~~~~~ 152 (339)
T cd06602 85 ILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWP--GYTVFPDFLNPNTQEWWTDEIKDFHD 152 (339)
T ss_pred EEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCC--CCCcCcCCCCHHHHHHHHHHHHHHHh
Confidence 875 33221 111111 0 0011 11234899999999999988888664
No 87
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=44.29 E-value=1e+02 Score=29.45 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCC--CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAY--STSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay--~~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
..+.|+++++.++.+... ++||.--. ++-..+|-.|.. .| ......++++++++.+.++++|++++
T Consensus 143 ~~e~i~~ia~~l~~l~~~--~~~llpyh--~~g~~Ky~~lg~-~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 143 SRENMQQALDVLIPLGIK--QIHLLPFH--QYGEPKYRLLGK-TWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CHHHHHHHHHHHHHcCCc--eEEEecCC--ccchhHHHHcCC-cCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 578899999988876444 66654221 111222322311 12 12345799999999999999999986
No 88
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=43.76 E-value=3.6e+02 Score=27.24 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHH-HHHHHHHHh--hhc--C
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKV-IDGILSDFS--KVF--K 223 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~f-l~~ll~E~~--~lF--p 223 (445)
....+++++++-+++++.||++.- |+.... .|+-.+|++.+. ++.|..++. +.. +
T Consensus 86 ~~~~~~~~~~~g~~~~~~~irls~------Hp~y~i--------------nL~S~~~ev~e~Si~~L~~~~~~~~~lG~~ 145 (303)
T PRK02308 86 IEPFKEELREIGEFIKEHNIRLSF------HPDQFV--------------VLNSPKPEVVENSIKDLEYHAKLLDLMGID 145 (303)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeec------cChhhh--------------cCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 447899999999999999987653 433221 123346777665 455554442 223 2
Q ss_pred ---CceEEecC
Q 013337 224 ---YKFVHLGG 231 (445)
Q Consensus 224 ---~~~~HiGg 231 (445)
.=.||.||
T Consensus 146 ~~~~vViHpG~ 156 (303)
T PRK02308 146 DSSKINIHVGG 156 (303)
T ss_pred CCCEEEECCCc
Confidence 23589999
No 89
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=43.71 E-value=1.2e+02 Score=29.79 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCC
Q 013337 151 YTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 190 (445)
Q Consensus 151 YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel 190 (445)
++.+++++++++|+++|.+++-|+...-=...+.+.-+++
T Consensus 144 l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadi 183 (260)
T PRK00278 144 LDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPL 183 (260)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCE
Confidence 6778999999999999999999987776444444433443
No 90
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=43.34 E-value=59 Score=33.06 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 100 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 100 ~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
+|.+...+.++.|....+|++..++- |.+- |...|.|.-.+ ..|++.+++.|++.|+-||--+----|
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv~----W~~h-----e~~~g~~df~g---~~dl~~f~~~a~~~gl~vilrpGpyi~ 88 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYVP----WNLH-----EPEEGQFDFTG---NRDLDRFLDLAQENGLYVILRPGPYIC 88 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE------HHHH-----SSBTTB---SG---GG-HHHHHHHHHHTT-EEEEEEES---
T ss_pred CChhHHHHHHHHHHhCCcceEEEecc----cccc-----CCCCCcccccc---hhhHHHHHHHHHHcCcEEEecccceec
Confidence 46888999999999999999998862 3221 22234443222 379999999999999999876544445
Q ss_pred hH
Q 013337 180 AL 181 (445)
Q Consensus 180 ~~ 181 (445)
++
T Consensus 89 aE 90 (319)
T PF01301_consen 89 AE 90 (319)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 91
>PLN02877 alpha-amylase/limit dextrinase
Probab=43.32 E-value=2.3e+02 Score=33.46 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCEEEeecCCchhhH
Q 013337 153 MADAAEIVSYAQKRGINVLAELDVPGHAL 181 (445)
Q Consensus 153 ~~ei~eiv~yA~~rGI~VIPEID~PGH~~ 181 (445)
..|+|++|+-+.++||+||-.+ ++-|+.
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~ 492 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLH 492 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCcccc
Confidence 4799999999999999999875 677774
No 92
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=43.19 E-value=84 Score=31.83 Aligned_cols=125 Identities=19% Similarity=0.286 Sum_probs=70.1
Q ss_pred ccCCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCC-CCCccCCC-CCCCCCHHHHHHHH
Q 013337 83 FSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYP-KLWDGAYS-TSERYTMADAAEIV 160 (445)
Q Consensus 83 ~~rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P-~L~~Gay~-~~~~YT~~ei~eiv 160 (445)
.|++.+.+.+ +|.+.+-+.+.++++.|...++-.=.+||.|.+... + .++- .++. .++ ....+ .|.+++|
T Consensus 6 ~P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~-~-~~~g~~~~~-~f~~d~~~F--Pdp~~mi 77 (317)
T cd06594 6 LPDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRR-E-TSFGDRLWW-NWEWDPERY--PGLDELI 77 (317)
T ss_pred CchhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcc-c-ccccceeee-eeEEChhhC--CCHHHHH
Confidence 3455555444 344448999999999999998876556664422110 0 0000 0000 000 11112 3678999
Q ss_pred HHHHHcCCEEEeecCCchhh--------HHHHhhC----CC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 013337 161 SYAQKRGINVLAELDVPGHA--------LSWGKGY----PS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDF 218 (445)
Q Consensus 161 ~yA~~rGI~VIPEID~PGH~--------~a~~~~y----pe-------l~~~~~~~~~Ld~~~~~t~~fl~~ll~E~ 218 (445)
+.-+++|++||+-|+ |+-. ++..++| ++ .++ .....+|.+||++.+...+.++++
T Consensus 78 ~~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~--g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 78 EELKARGIRVLTYIN-PYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGE--FDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred HHHHHCCCEEEEEec-CceecCCchhHHHHHHCCeEEECCCCCeeeeccCC--CCceeeecCCHHHHHHHHHHHHHH
Confidence 999999999998776 3321 1111111 10 000 111358999999999888887776
No 93
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=42.32 E-value=34 Score=35.99 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..|+.+++++|++.|+++||-||-
T Consensus 203 tG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 203 CGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 35679999999999999999998874
No 94
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.25 E-value=38 Score=35.41 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
+..||++++++|+++|+++||-||-.
T Consensus 177 Gav~~~~~l~~i~~~a~~~~i~ii~D 202 (393)
T COG0436 177 GAVYSKEELKAIVELAREHDIIIISD 202 (393)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEe
Confidence 45799999999999999999999864
No 95
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=42.03 E-value=26 Score=36.49 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe-ec
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA-EL 174 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP-EI 174 (445)
.+..+|++|++.|.+.|+++||.||- ||
T Consensus 171 ~Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 171 TGRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred CCccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 35679999999999999999999998 66
No 96
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.47 E-value=88 Score=30.28 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
.++.+++.|+..+..+...+.+|.... ++. ....+ .-.-..+-+++|.++|+++||++.-|-
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~---~~~~~--------~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYL---TPPNV--------IWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCC---CCHHH--------HHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 367899999999999999998876432 110 00000 001223568999999999999999884
No 97
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.20 E-value=63 Score=30.95 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEecCCccce---eeCCCCCCCccCCCCCCCCCHHHH-----------------HHH
Q 013337 100 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL---EIPSYPKLWDGAYSTSERYTMADA-----------------AEI 159 (445)
Q Consensus 100 ~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frl---e~~~~P~L~~Gay~~~~~YT~~ei-----------------~ei 159 (445)
.+.+...++++.+...++..+-+=++..++... -...||++..|+ +...|.+|+ .++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v 100 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPPL 100 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEE---eeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 468899999999999999998888877765542 124688876554 122333332 378
Q ss_pred HHHHHHcCCEEEeecCCchhhHHHH
Q 013337 160 VSYAQKRGINVLAELDVPGHALSWG 184 (445)
Q Consensus 160 v~yA~~rGI~VIPEID~PGH~~a~~ 184 (445)
+++|+++||.+||.+-+|.-...+.
T Consensus 101 i~~a~~~~i~~iPG~~TptEi~~a~ 125 (212)
T PRK05718 101 LKAAQEGPIPLIPGVSTPSELMLGM 125 (212)
T ss_pred HHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 9999999999999999998765443
No 98
>PLN03059 beta-galactosidase; Provisional
Probab=40.02 E-value=5.4e+02 Score=29.98 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 100 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 100 ~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
.|.+..++.|..|....+|++..++ -|.+- |-..|.|.-.+ ..|+..+++.|++.|+-||--+
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV----~Wn~H-----Ep~~G~~dF~G---~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYV----FWNGH-----EPSPGNYYFED---RYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEe----ccccc-----CCCCCeeeccc---hHHHHHHHHHHHHcCCEEEecC
Confidence 4789999999999999999998665 22221 22245553333 6799999999999999998653
No 99
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=39.77 E-value=1.3e+02 Score=29.21 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=45.5
Q ss_pred eeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 013337 90 GLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGIN 169 (445)
Q Consensus 90 GlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~ 169 (445)
|.++.++- -+.+.|+.++.+.++.+++.+..-+.| ....+|.++++++-+.++++||+
T Consensus 3 g~~~~~~~------~~~~~~~~~~~~G~~~vel~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~gl~ 60 (273)
T smart00518 3 GAHVSAAG------GLYKAFIEAVDIGARSFQLFLGNPRSW----------------KGVRLSEETAEKFKEALKENNID 60 (273)
T ss_pred eEEEcccC------cHhHHHHHHHHcCCCEEEEECCCCCCC----------------CCCCCCHHHHHHHHHHHHHcCCC
Confidence 56666553 256789999999999999977543222 12358999999999999999998
Q ss_pred EE
Q 013337 170 VL 171 (445)
Q Consensus 170 VI 171 (445)
|.
T Consensus 61 ls 62 (273)
T smart00518 61 VS 62 (273)
T ss_pred EE
Confidence 65
No 100
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=39.66 E-value=1.7e+02 Score=31.17 Aligned_cols=67 Identities=15% Similarity=0.322 Sum_probs=49.0
Q ss_pred eeeecCCCC-CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 013337 91 LLIDTSRHY-QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGIN 169 (445)
Q Consensus 91 lmLD~aR~f-~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~ 169 (445)
++++.+-+| ++++.+..-....-....+|=-+=++. |+-| -+..||++++..|+.+|.+++|.
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNP--------LG~~~~~e~L~~ll~Fa~~kniH 261 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNP--------LGTTLSPEELISLLNFASRKNIH 261 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCC--------CCCccCHHHHHHHHHHHhhcceE
Confidence 566777776 567777777777776666665555543 2222 24569999999999999999999
Q ss_pred EEee
Q 013337 170 VLAE 173 (445)
Q Consensus 170 VIPE 173 (445)
||-.
T Consensus 262 vI~D 265 (471)
T KOG0256|consen 262 VISD 265 (471)
T ss_pred EEee
Confidence 9973
No 101
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=39.24 E-value=66 Score=31.65 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEeecC
Q 013337 150 RYTMADAAEIVSYAQKRGINVLAELD 175 (445)
Q Consensus 150 ~YT~~ei~eiv~yA~~rGI~VIPEID 175 (445)
..+.++..++|+.|+++|..|+||+-
T Consensus 109 ~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 109 DLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred eCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 47899999999999999999999986
No 102
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=38.42 E-value=4e+02 Score=26.29 Aligned_cols=150 Identities=18% Similarity=0.312 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCEEEeecCCchh----hHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEE
Q 013337 153 MADAAEIVSYAQKRGINVLAELDVPGH----ALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVH 228 (445)
Q Consensus 153 ~~ei~eiv~yA~~rGI~VIPEID~PGH----~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~H 228 (445)
.+|..++++-|++.||..+--+-+.-. +....+.||.++..- .-+|.+ ......+-++.|.+-+.. ..+.+=
T Consensus 16 ~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~-G~HP~~-~~~~~~~~~~~l~~~~~~--~~~vva 91 (256)
T COG0084 16 DEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAV-GVHPLD-ADEHSEEDLEELEQLAEH--HPKVVA 91 (256)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEE-eeCCCc-cccccHHHHHHHHHHHhc--CCCeEE
Confidence 457788999999999877665433322 223446888764321 122333 222222222222222221 346666
Q ss_pred ecCCccccc-cccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeEEE-----ecccccccCC-CCCCCeEEEec
Q 013337 229 LGGDEVNTS-CWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVN-----WEETFNNFGN-KLSPKTVVHNW 301 (445)
Q Consensus 229 iGgDEv~~~-~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~~~-----W~d~~~~~~~-~l~~~~ii~~W 301 (445)
|| |+-.. .|...+ ..+.+..++.+-.+++++.++-+++ ++|.+.-... ..+...|++.+
T Consensus 92 IG--EiGLDy~~~~~~------------~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcF 157 (256)
T COG0084 92 IG--EIGLDYYWDKEP------------DKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCF 157 (256)
T ss_pred EE--ecccCccccccc------------cHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEcc
Confidence 65 44321 233332 1234544555556778888875543 5555432222 23678889888
Q ss_pred CCC-chHHHHHHcCCcEEEe
Q 013337 302 LGG-GVAQRVVAAGLRCIVS 320 (445)
Q Consensus 302 ~~~-~~~~~~~~~G~~vI~s 320 (445)
+++ ..++++++.||-+=.+
T Consensus 158 sGs~e~a~~~~d~G~yisis 177 (256)
T COG0084 158 SGSAEEARKLLDLGFYISIS 177 (256)
T ss_pred CCCHHHHHHHHHcCeEEEEC
Confidence 876 4678899999654443
No 103
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=38.29 E-value=1e+02 Score=37.67 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCC-CccCCC-------CCCC----CCHHHHHHHHHHHHHc-C
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKL-WDGAYS-------TSER----YTMADAAEIVSYAQKR-G 167 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L-~~Gay~-------~~~~----YT~~ei~eiv~yA~~r-G 167 (445)
|.+...+-++.++..++|.+|+= ||. |.= +.-.|+ ...+ -|.+|++++|+-|.++ |
T Consensus 130 ~~~~w~~~L~~ik~lGyN~Ihft-------PI~----~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~G 198 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFT-------PLQ----ELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWN 198 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC-------CCc----cCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcC
Confidence 46778889999999999998863 222 110 011121 1122 3789999999999996 9
Q ss_pred CEEEeecCCchhhH---HHHhhCCCC
Q 013337 168 INVLAELDVPGHAL---SWGKGYPSL 190 (445)
Q Consensus 168 I~VIPEID~PGH~~---a~~~~ypel 190 (445)
|.+|-.+ +..|+. .|+..|||-
T Consensus 199 m~~ilDv-V~NHTa~ds~Wl~eHPEa 223 (1464)
T TIGR01531 199 VLSITDI-VFNHTANNSPWLLEHPEA 223 (1464)
T ss_pred CEEEEEe-eecccccCCHHHHhChHh
Confidence 9999876 566665 588889985
No 104
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=37.82 E-value=4.7e+02 Score=26.84 Aligned_cols=138 Identities=14% Similarity=0.201 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCc-EEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhh
Q 013337 102 LPIIKNVIDSMAYAKLN-VLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHA 180 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN-~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~ 180 (445)
-+.+++++..-...+=| ++-+-++|...-+-++++.|.. ..||-+.+.+.++-+.+.||.-|--+-+|.|-
T Consensus 16 ~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~--------~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~K 87 (322)
T PRK13384 16 SEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGI--------SRLPESALADEIERLYALGIRYVMPFGISHHK 87 (322)
T ss_pred CHHHHHHHhcCCCCHHHceeeEEEecCCCCceecCCCCCc--------ceECHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 34455554332222222 3334455666667778888876 35999999999999999999999888888772
Q ss_pred H------------------HHHhhCCCC--------CC---CCCCCCCC---CCCChHHHHHHHHHHHHHhhhcCCceEE
Q 013337 181 L------------------SWGKGYPSL--------WP---SKDCQEPL---DVSNEFTFKVIDGILSDFSKVFKYKFVH 228 (445)
Q Consensus 181 ~------------------a~~~~ypel--------~~---~~~~~~~L---d~~~~~t~~fl~~ll~E~~~lFp~~~~H 228 (445)
. .+.+.+|++ |+ .+.|. .| .+.|++|.+.+.++---.++
T Consensus 88 d~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcG-il~~g~i~ND~Tl~~L~~~Als~A~-------- 158 (322)
T PRK13384 88 DAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCG-VLHNDEVDNDATVENLVKQSVTAAK-------- 158 (322)
T ss_pred CCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCcee-eccCCcCccHHHHHHHHHHHHHHHH--------
Confidence 2 122467876 11 01111 12 25688888877665433332
Q ss_pred ecCCcccccccc--CCHHHHHHHHHCCCCh
Q 013337 229 LGGDEVNTSCWT--LTPHVSKWLKEHSMNE 256 (445)
Q Consensus 229 iGgDEv~~~~w~--~~p~~~~~~~~~g~~~ 256 (445)
-|+|=+..+.-- .-..+++.+.++|++.
T Consensus 159 AGADiVAPSdMMDGrV~aIR~aLd~~g~~~ 188 (322)
T PRK13384 159 AGADMLAPSAMMDGQVKAIRQGLDAAGFEH 188 (322)
T ss_pred cCCCeEecccccccHHHHHHHHHHHCCCCC
Confidence 466666443211 1236778888888754
No 105
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=37.45 E-value=38 Score=29.26 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEeecCCchhh
Q 013337 152 TMADAAEIVSYAQKRGINVLAELDVPGHA 180 (445)
Q Consensus 152 T~~ei~eiv~yA~~rGI~VIPEID~PGH~ 180 (445)
|.+|+++++++|+++++.|.+- .-||.
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~--g~G~~ 35 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR--GGGHS 35 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE--SSSTT
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--cCCCC
Confidence 6899999999999999999986 34454
No 106
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=37.39 E-value=45 Score=34.32 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||.+++++|++.|+++++-||=
T Consensus 179 TG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 179 TGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred cCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 35679999999999999999998873
No 107
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=37.38 E-value=64 Score=32.68 Aligned_cols=71 Identities=27% Similarity=0.424 Sum_probs=46.4
Q ss_pred eeeeecCCCC-CC--hHH-HHHHHHHHHHcCCcEEEEEEecCCccc--eeeCCCCCCCccCCCCCCCCCHHHHHHHHHHH
Q 013337 90 GLLIDTSRHY-QP--LPI-IKNVIDSMAYAKLNVLHWHIVDTQSFP--LEIPSYPKLWDGAYSTSERYTMADAAEIVSYA 163 (445)
Q Consensus 90 GlmLD~aR~f-~p--~~~-lk~~Id~Ma~~KlN~Lh~HltD~q~fr--le~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA 163 (445)
|++| ||- +| ++. -|.+++.+|..=-|..-.-+-+- |+ +....||+|. ..+|.+|+.+.++||
T Consensus 257 ~~ii---RHLVlPghlecCTkpI~~wiae~~g~~~~vNiM~Q--Y~P~ykA~eypeI~-------R~lt~eE~e~a~~~a 324 (335)
T COG1313 257 GLII---RHLVLPGHLECCTKPILRWIAENLGNDVRVNIMFQ--YRPEYKAEEYPEIN-------RRLTREEYEKALEYA 324 (335)
T ss_pred ceEE---EEEecCCchhhccHHHHHHHHHhCCCCeeEEehhh--ccchhhhhhchhhc-------ccCCHHHHHHHHHHH
Confidence 5665 675 34 555 66777777776554333333221 11 1223578874 569999999999999
Q ss_pred HHcCCEEEe
Q 013337 164 QKRGINVLA 172 (445)
Q Consensus 164 ~~rGI~VIP 172 (445)
++.|++-+.
T Consensus 325 ~~~gl~~~~ 333 (335)
T COG1313 325 EKLGLTNIL 333 (335)
T ss_pred HHcCCceee
Confidence 999998654
No 108
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=37.35 E-value=55 Score=33.44 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||.+++++|++.|+++|+-||=
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (385)
T PRK09276 179 TGAVADLEFFEEVVDFAKKYDIIVCH 204 (385)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 35679999999999999999997763
No 109
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=37.26 E-value=1.2e+02 Score=32.02 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCC-CCccCCC-------CCCCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPK-LWDGAYS-------TSERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~-L~~Gay~-------~~~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
+.-|.+-+|.+..+++|.+++= |-++. .....|. ...+=|.+|++++++-|.+|||.||-.
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~-----------Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLS-----------PIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeC-----------CCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 5566688899999999998762 33332 1111111 124558999999999999999999998
Q ss_pred cCCchhhH
Q 013337 174 LDVPGHAL 181 (445)
Q Consensus 174 ID~PGH~~ 181 (445)
+- .-|+.
T Consensus 97 ~V-~NH~s 103 (505)
T COG0366 97 LV-FNHTS 103 (505)
T ss_pred ec-cCcCC
Confidence 63 44443
No 110
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=37.21 E-value=59 Score=35.07 Aligned_cols=25 Identities=8% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..||++++++|++.|++++|-||-
T Consensus 213 G~~~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 213 GTMLDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEE
Confidence 5679999999999999999998775
No 111
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=36.98 E-value=40 Score=36.82 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=38.0
Q ss_pred EEEEecCCccceeeCCCCCCCccC---------CCCCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 121 HWHIVDTQSFPLEIPSYPKLWDGA---------YSTSERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 121 h~HltD~q~frle~~~~P~L~~Ga---------y~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
|+||.|. ||-+.++-+|-|..|- |+.+. .-+.++..-.||++|||- .|.|+.
T Consensus 372 ~l~lvDa-g~~~N~p~ppllrP~R~VDlIisfd~Sa~~--~~~~L~~~~~y~~~~gIp-fPk~~~ 432 (541)
T cd07201 372 HLCLVDT-AFFINTSYPPLLRPERKVDVILSLNYSLGS--QFEPLKQASEYCSEQGIP-FPKIEL 432 (541)
T ss_pred ceeeeec-ccccCCCCCcccCCCCcccEEEEeccccCC--cchHHHHHHHHHHHcCCC-CCCCCC
Confidence 5888886 7888888888876221 33322 678899999999999997 555554
No 112
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=36.26 E-value=5e+02 Score=26.72 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHh
Q 013337 106 KNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGK 185 (445)
Q Consensus 106 k~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~ 185 (445)
+.+++.|+.+.+|..-+++=-+ |. . .+..+.++..++.+-|++.|..|+..+ |
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~----------P~------~-~g~~~~~~~~~~akrak~~Gm~vlldf----H------ 79 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN----------PY------D-GGYNDLEDVIALAKRAKAAGMKVLLDF----H------ 79 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-----------T------T-TTTTSHHHHHHHHHHHHHTT-EEEEEE-----------
T ss_pred CCHHHHHHhcCCCeEEEEeccC----------Cc------c-cccCCHHHHHHHHHHHHHCCCeEEEee----c------
Confidence 5678888999999988876333 11 1 467999999999999999999999775 2
Q ss_pred hCCCCCCCCCCC--------CCCCCCChHHHHHHHHHHHHHhhhc-CCceEEecCCccccccccCCHHHHHHHHHCCCCh
Q 013337 186 GYPSLWPSKDCQ--------EPLDVSNEFTFKVIDGILSDFSKVF-KYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNE 256 (445)
Q Consensus 186 ~ypel~~~~~~~--------~~Ld~~~~~t~~fl~~ll~E~~~lF-p~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~ 256 (445)
|.+.|.++..+ ..++-.....+++.+++++++.+.= .-.++-||-.=-..-+|.... ...
T Consensus 80 -YSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~----------~~~ 148 (332)
T PF07745_consen 80 -YSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK----------PSN 148 (332)
T ss_dssp -SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC----------TT-
T ss_pred -ccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC----------ccC
Confidence 45554322111 1233345778888889998886542 347888876444444563321 111
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013337 257 SQAYQYFVLQAQKIALL 273 (445)
Q Consensus 257 ~~l~~~F~~~l~~~v~~ 273 (445)
-+-+..+++...+.|++
T Consensus 149 ~~~~a~ll~ag~~AVr~ 165 (332)
T PF07745_consen 149 WDNLAKLLNAGIKAVRE 165 (332)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 25566677766777766
No 113
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=36.13 E-value=3.2e+02 Score=27.89 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHcCCcEEEE--EEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCch
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHW--HIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPG 178 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~--HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PG 178 (445)
.-+.+++++..-. +-.|-|-| -+.+..+-+-|+++.|.. ..||-+++.+-++.+...||..|--+-+|-
T Consensus 15 k~~~~R~lv~Et~-L~~~dLI~PiFV~eg~~~~~~I~SMPgv--------~r~s~d~l~~~~~~~~~lGi~av~LFgvp~ 85 (330)
T COG0113 15 KSPALRRLVRETR-LTPNDLIYPIFVVEGENIKEEIPSMPGV--------YRYSLDRLVEEAEELVDLGIPAVILFGVPD 85 (330)
T ss_pred CCHHHHHHHHhcC-CCHHHeeEeEEEecCCCCccccCCCCCc--------eeccHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3455666654432 22333333 344555556778888876 459999999999999999999999999995
Q ss_pred h
Q 013337 179 H 179 (445)
Q Consensus 179 H 179 (445)
|
T Consensus 86 ~ 86 (330)
T COG0113 86 D 86 (330)
T ss_pred c
Confidence 5
No 114
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.88 E-value=53 Score=32.12 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
++.+++.|+..+..+.+++.++-.+ . .+.+.. ........+-+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~-----~---~~~~~~----~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD-----V---YYEEHD----EETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc-----c---ccCcCC----HHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 5679999999999999998765211 0 000000 00112445789999999999999999993
No 115
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=35.84 E-value=26 Score=38.33 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEe----------------ecCCchhhHHHH
Q 013337 152 TMADAAEIVSYAQKRGINVLA----------------ELDVPGHALSWG 184 (445)
Q Consensus 152 T~~ei~eiv~yA~~rGI~VIP----------------EID~PGH~~a~~ 184 (445)
-++++-+=++.-++|||+|-- -||+|||...-.
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 456777778888999998853 599999998543
No 116
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=35.54 E-value=1e+02 Score=31.77 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=42.4
Q ss_pred cCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcC
Q 013337 95 TSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG 167 (445)
Q Consensus 95 ~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rG 167 (445)
.+|+.|.++.++++++.++..|+|+|-- |+-+ | | |..+|+..||++|++-|
T Consensus 234 ~G~~dYdv~kvle~aE~i~~a~idvlIa--------Pv~l---P----G-------~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 234 AGRKDYDVKKVLEVAEYIANAGIDVLIA--------PVWL---P----G-------VNDDEMPKIIEWAREIG 284 (414)
T ss_pred cCccccCHHHHHHHHHHHHhCCCCEEEe--------eeec---C----C-------cChHHHHHHHHHHHHhC
Confidence 4688999999999999999999999863 2222 1 2 67889999999999998
No 117
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=34.99 E-value=71 Score=31.07 Aligned_cols=65 Identities=25% Similarity=0.452 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCc
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYK 225 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~ 225 (445)
..+.|.-++...++++|+++||+|- ||+..|....|.... +.+.++..+.+.+-+++++.-|.++
T Consensus 9 ~~G~~n~~~~D~~~~~a~~~gi~v~------gH~l~W~~~~P~W~~--------~~~~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 9 SRGQFNFSGADAIVNFAKENGIKVR------GHTLVWHSQTPDWVF--------NLSKETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CCCccChHHHHHHHHHHHHCCCEEE------EEEEeecccCCHhhh--------cCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 3567899999999999999999995 787766544453211 0114455566666666666666543
No 118
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=34.98 E-value=2.9e+02 Score=29.28 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=39.3
Q ss_pred ecCCCC-CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 94 DTSRHY-QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 94 D~aR~f-~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
|...+| +.++.+++.++....-+.++=-+.++. |.- ..+..||++++++|++.|++++|.||-
T Consensus 175 ~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~n--------P~N--------PtG~~~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 175 DSSNNFQVTPQALEAAYQEAEAANIRVRGVLITN--------PSN--------PLGATVQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeC--------CCC--------CcCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 434455 457777777765443333321122221 111 234579999999999999999999985
No 119
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=34.79 E-value=87 Score=31.06 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCC-EEEeecC
Q 013337 97 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGI-NVLAELD 175 (445)
Q Consensus 97 R~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI-~VIPEID 175 (445)
++.++.+.++++++.++..+...+ .++.. +.....++.+|+++++++|+ .| .|.
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I--~~tGG---------------------EPll~~~l~~iv~~l~~~g~~~v--~i~ 91 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKV--KITGG---------------------EPLLRKDLIEIIRRIKDYGIKDV--SMT 91 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEE--EEECc---------------------ccccccCHHHHHHHHHhCCCceE--EEE
Confidence 457899999999999988776654 34432 23334578899999999998 43 455
Q ss_pred Cchhh
Q 013337 176 VPGHA 180 (445)
Q Consensus 176 ~PGH~ 180 (445)
+-|..
T Consensus 92 TNG~l 96 (302)
T TIGR02668 92 TNGIL 96 (302)
T ss_pred cCchH
Confidence 66653
No 120
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=34.49 E-value=3.7e+02 Score=27.35 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=67.6
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCc
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 177 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~P 177 (445)
+|.+-+.+.++++.+...++..=.+++..+ |- ..+-.++ + ....|. |.+.+++.-+++||+|++-++ |
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~---~-d~~~FP--dp~~mi~~L~~~G~k~~~~~~-P 86 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT---W-DKKKFP--DPEKMQEKLASKGRKLVTIVD-P 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE---e-CcccCC--CHHHHHHHHHHCCCEEEEEec-C
Confidence 456799999999999999998666666332 10 1111111 0 112232 678899999999999999886 2
Q ss_pred hhh------H---HHHhhC----CC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 178 GHA------L---SWGKGY----PS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 178 GH~------~---a~~~~y----pe-------l~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
+-. . +.-++| ++ .++. ....+|.+||++.+...+.++++..
T Consensus 87 ~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 87 HIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPG--SSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred ceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCC--CcCCccCCChhHHHHHHHHHHHHhh
Confidence 211 1 111111 10 0111 1236899999999999999998764
No 121
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=34.31 E-value=1.1e+02 Score=31.54 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||++++++|++.|+++++-||-
T Consensus 186 TG~~~s~~~~~~l~~~a~~~~~~iI~ 211 (402)
T TIGR03542 186 TGTVLTKEQLKELVDYANEHGSLILF 211 (402)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 45679999999999999999997773
No 122
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=34.17 E-value=5.3e+02 Score=26.45 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCc-EEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhH
Q 013337 103 PIIKNVIDSMAYAKLN-VLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHAL 181 (445)
Q Consensus 103 ~~lk~~Id~Ma~~KlN-~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~ 181 (445)
+.+++++..=...+-| .+-+-++|.++-+-++++.|.. ..||-+++.+.++-+.+.||.=|--+=+|.+-.
T Consensus 15 ~~~R~lv~Et~l~~~dlI~PiFV~eg~~~~~~I~smPg~--------~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd 86 (323)
T PRK09283 15 AALRRLVRETRLTPNDLIYPLFVVEGENEREEIPSMPGV--------YRLSIDLLVKEAEEAVELGIPAVALFGVPELKD 86 (323)
T ss_pred HHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCc--------eeeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCC
Confidence 3444444333222222 3344556666767778888876 459999999999999999998887777765511
Q ss_pred ---------------H---HHhhCCCC--------CC---CCCCC--CCCCCCChHHHHHHHHHHHHHhhhcCCceEEec
Q 013337 182 ---------------S---WGKGYPSL--------WP---SKDCQ--EPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLG 230 (445)
Q Consensus 182 ---------------a---~~~~ypel--------~~---~~~~~--~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiG 230 (445)
+ +.+.+|++ |+ .+.|. ..=.+.|++|.+.+.++---.++ -|
T Consensus 87 ~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A~--------AG 158 (323)
T PRK09283 87 EDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQAE--------AG 158 (323)
T ss_pred cccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccCCcCcCHHHHHHHHHHHHHHHH--------hC
Confidence 1 22467876 11 01110 01235588998887665444443 36
Q ss_pred CCcccccccc--CCHHHHHHHHHCCCCh
Q 013337 231 GDEVNTSCWT--LTPHVSKWLKEHSMNE 256 (445)
Q Consensus 231 gDEv~~~~w~--~~p~~~~~~~~~g~~~ 256 (445)
+|=+..+.-- .--.+++.+.++|++.
T Consensus 159 aDiVAPSdMMDGrV~aIR~aLd~~g~~~ 186 (323)
T PRK09283 159 ADIVAPSDMMDGRVGAIREALDEAGFTD 186 (323)
T ss_pred CCEEEcccccccHHHHHHHHHHHCCCCC
Confidence 6666443221 1236788888888754
No 123
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=34.10 E-value=42 Score=33.13 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCC
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 190 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel 190 (445)
..++++++++++++|++.|++++-|+-..-.....+..-+.+
T Consensus 140 ~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~i 181 (254)
T PF00218_consen 140 AILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADI 181 (254)
T ss_dssp GGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SE
T ss_pred HhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCE
Confidence 469999999999999999999999999998888777654544
No 124
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=34.01 E-value=59 Score=33.80 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..||.+++++|++.|+++++-||-
T Consensus 184 G~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 184 GSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEEE
Confidence 4679999999999999999998874
No 125
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.58 E-value=4.3e+02 Score=26.99 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccce-----eeCCCCCCCcc--CCC-CCCCCCH----HHHHHHHHHHHH
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL-----EIPSYPKLWDG--AYS-TSERYTM----ADAAEIVSYAQK 165 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frl-----e~~~~P~L~~G--ay~-~~~~YT~----~ei~eiv~yA~~ 165 (445)
.|.+-+.++++++.+...++..=-+||.|=++.+- .+ .|-.. .| .++ ....+-. .|.+++|+..++
T Consensus 19 ~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~-~y~~~-~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~ 96 (340)
T cd06597 19 EWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDA-QYTPK-DGGAPLSYDDFSFPVEGRWPNPKGMIDELHE 96 (340)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccc-hhccc-ccCCcceecccccCccccCCCHHHHHHHHHH
Confidence 35679999999999999999855555533111100 00 01000 00 000 0011211 278999999999
Q ss_pred cCCEEE----eecCCchhh---------HHHHhhC------------CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHh
Q 013337 166 RGINVL----AELDVPGHA---------LSWGKGY------------PSLWPSKDCQEPLDVSNEFTFKVIDGILSDFS 219 (445)
Q Consensus 166 rGI~VI----PEID~PGH~---------~a~~~~y------------pel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~ 219 (445)
+|++|+ |-|+.=-|. .+..++| |..|+ .....+|.+||++.+...+.++++.
T Consensus 97 ~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~--g~~~~~Dftnp~a~~Ww~~~~~~~~ 173 (340)
T cd06597 97 QGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWF--PDSLMLDFTNPEAAQWWMEKRRYLV 173 (340)
T ss_pred CCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccC--CCceeecCCCHHHHHHHHHHHHHHH
Confidence 999995 877631111 1111111 01111 1123599999999999888888776
No 126
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=33.32 E-value=3.3e+02 Score=27.09 Aligned_cols=91 Identities=23% Similarity=0.285 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCEEEeecCCch--hhHHHHhhCCCCCCCCCCCCCCCCCChHHH-HHHHHHHHHHhhhcCCceEEecCC
Q 013337 156 AAEIVSYAQKRGINVLAELDVPG--HALSWGKGYPSLWPSKDCQEPLDVSNEFTF-KVIDGILSDFSKVFKYKFVHLGGD 232 (445)
Q Consensus 156 i~eiv~yA~~rGI~VIPEID~PG--H~~a~~~~ypel~~~~~~~~~Ld~~~~~t~-~fl~~ll~E~~~lFp~~~~HiGgD 232 (445)
..++++.|+++||+|+|.|-..+ +..+-. ...+ .+++++. .|+++|++-+.+. |-|
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~--~~~~-----------l~~~~~r~~fi~~iv~~l~~~--------~~D 105 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSEL--AHAV-----------LSNPEARQRLINNILALAKKY--------GYD 105 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHH--HHHH-----------hcCHHHHHHHHHHHHHHHHHh--------CCC
Confidence 36899999999999999985432 211000 0000 2344544 4888888776653 223
Q ss_pred ccccccccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeE
Q 013337 233 EVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEI 278 (445)
Q Consensus 233 Ev~~~~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~ 278 (445)
=+... |+.-+. +..+.|..|++.+.+.+.++|+..
T Consensus 106 GidiD-wE~~~~----------~d~~~~~~fl~~lr~~l~~~~~~l 140 (313)
T cd02874 106 GVNID-FENVPP----------EDREAYTQFLRELSDRLHPAGYTL 140 (313)
T ss_pred cEEEe-cccCCH----------HHHHHHHHHHHHHHHHhhhcCcEE
Confidence 22221 322110 123668899999999888777653
No 127
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=33.25 E-value=56 Score=34.90 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..||.+++++|++.|+++++-||=
T Consensus 205 G~~~s~e~l~~ll~~a~~~~~~iI~ 229 (468)
T PLN02450 205 GTTTTRTELNLLVDFITAKNIHLIS 229 (468)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4679999999999999999998885
No 128
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=33.24 E-value=1.9e+02 Score=29.89 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHH-HHHHHHHHHhhhcCCceEEecCCccc
Q 013337 157 AEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFK-VIDGILSDFSKVFKYKFVHLGGDEVN 235 (445)
Q Consensus 157 ~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~-fl~~ll~E~~~lFp~~~~HiGgDEv~ 235 (445)
.+++.+|+++||+|++-.+.|.. ...+++..+ |++++++.+.+. |-|=++
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~~---------------------~l~~~~~R~~fi~siv~~~~~~--------gfDGId 117 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPLE---------------------QISNPTYRTQWIQQKVELAKSQ--------FMDGIN 117 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCHH---------------------HcCCHHHHHHHHHHHHHHHHHh--------CCCeEE
Confidence 48899999999999986443321 134555554 899999877653 222222
Q ss_pred cccccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcC
Q 013337 236 TSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHG 275 (445)
Q Consensus 236 ~~~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G 275 (445)
.. |+. |.. .+-...+.|..|++++.+.+++.|
T Consensus 118 ID-wE~-p~~------~~~~d~~~~t~llkelr~~l~~~~ 149 (358)
T cd02875 118 ID-IEQ-PIT------KGSPEYYALTELVKETTKAFKKEN 149 (358)
T ss_pred Ec-ccC-CCC------CCcchHHHHHHHHHHHHHHHhhcC
Confidence 11 321 110 011123677888888888887764
No 129
>PTZ00377 alanine aminotransferase; Provisional
Probab=33.22 E-value=61 Score=34.56 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||++++++|++.|+++|+-||=
T Consensus 231 TG~~~s~e~~~~i~~~a~~~~~~iI~ 256 (481)
T PTZ00377 231 TGQVLTRDVMEEIIKFCYEKGIVLMA 256 (481)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 35679999999999999999997764
No 130
>PLN02368 alanine transaminase
Probab=33.21 E-value=54 Score=34.40 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||++++++|++.|+++++-||-
T Consensus 223 TG~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 223 TGQCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 35679999999999999999998885
No 131
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.11 E-value=4.7e+02 Score=26.31 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCcccee-eCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCC----
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLE-IPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV---- 176 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle-~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~---- 176 (445)
-+.++++++.+...++.+=-+||.++ |--. -..+...+ + ....| .|.+++|+.-+++|++|++-|+-
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~--~~~~~~~~~~~f~---~-d~~~F--Pdp~~mi~~L~~~g~k~~~~i~P~i~~ 99 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSG--YTSIEGGKRYVFN---W-NKDRF--PDPAAFVAKFHERGIRLAPNIKPGLLQ 99 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecc--ccccCCCceeeee---c-CcccC--CCHHHHHHHHHHCCCEEEEEeCCcccC
Confidence 57899999999999987555555321 1000 00000000 0 01122 25789999999999999986642
Q ss_pred --chhhHHHHhhCCCCC-CCC----------CCCCCCCCCChHHHHHHHHHHHHHh
Q 013337 177 --PGHALSWGKGYPSLW-PSK----------DCQEPLDVSNEFTFKVIDGILSDFS 219 (445)
Q Consensus 177 --PGH~~a~~~~ypel~-~~~----------~~~~~Ld~~~~~t~~fl~~ll~E~~ 219 (445)
|-..+..-++|- +. .+. .....+|.+||++.+...+.+++..
T Consensus 100 ~~~~y~e~~~~g~~-v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 100 DHPRYKELKEAGAF-IKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred CCHHHHHHHHCCcE-EEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 111111111110 00 000 0112589999999999988886543
No 132
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=33.10 E-value=48 Score=33.44 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..||.+++++|++.|+++|+-||=
T Consensus 150 G~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 150 GATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred CcccCHHHHHHHHHHHHHcCcEEEE
Confidence 4569999999999999999997774
No 133
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=32.63 E-value=22 Score=38.27 Aligned_cols=24 Identities=46% Similarity=0.758 Sum_probs=18.6
Q ss_pred HHHHHcCCEEEee-------------cCCchhhHHHH
Q 013337 161 SYAQKRGINVLAE-------------LDVPGHALSWG 184 (445)
Q Consensus 161 ~yA~~rGI~VIPE-------------ID~PGH~~a~~ 184 (445)
+.-++|||+|..- +|+|||+..-+
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 4568999998654 99999998643
No 134
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=31.88 E-value=4.6e+02 Score=26.59 Aligned_cols=110 Identities=18% Similarity=0.353 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCC-
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV- 176 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~- 176 (445)
.|.+-+.++++++.+...++-.=.+++..+ | . ..+..++ + ....|. |.+++++..+++||+|++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~--~-~~~~~f~---~-d~~~fP--dp~~m~~~l~~~g~~~~~~~~P~ 87 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--Y--M-DGYRVFT---W-DKERFP--DPKELIKELHEQGFKVVTIIDPG 87 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--h--h-CCCCcee---e-ccccCC--CHHHHHHHHHHCCCEEEEEEeCc
Confidence 345788899999999998888655555322 1 0 1121111 0 112233 5689999999999999976542
Q ss_pred ----chhh---HHHHhhC----CC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 013337 177 ----PGHA---LSWGKGY----PS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDFSK 220 (445)
Q Consensus 177 ----PGH~---~a~~~~y----pe-------l~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~ 220 (445)
++.. ++..++| ++ .++. ....+|.+||++.+...+.++++.+
T Consensus 88 v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 88 VKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPG--LSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred eeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCC--CccccCCCChHHHHHHHHHHHHHhh
Confidence 2211 1111111 00 0111 1234899999999999998888753
No 135
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=31.71 E-value=1.5e+02 Score=29.08 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 103 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 103 ~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
..++++++....+.+++.- +|| | .-..+.++..++|+.++++|..|+||+-.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IE--iS~----------------G----~~~i~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVE--ISD----------------G----SMEISLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEE--EcC----------------C----ccCCCHHHHHHHHHHHHhCCCeEeccccc
Confidence 4455566666666666532 333 2 12378899999999999999999999644
No 136
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=31.70 E-value=56 Score=33.37 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
.+..+|.+|++.|.+.|+++||-+|-.
T Consensus 192 TGNVlTdeE~~kldalA~~~giPliID 218 (417)
T COG3977 192 TGNVLTDEELAKLDALARQHGIPLIID 218 (417)
T ss_pred CCCcccHHHHHHHHHHhhhcCCcEEEe
Confidence 467899999999999999999998864
No 137
>PRK06348 aspartate aminotransferase; Provisional
Probab=31.66 E-value=60 Score=33.28 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..+|.+++++|++.|+++|+-||=
T Consensus 176 G~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 176 GAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred CcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 4679999999999999999997773
No 138
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=31.08 E-value=5.9e+02 Score=26.03 Aligned_cols=119 Identities=21% Similarity=0.269 Sum_probs=73.9
Q ss_pred EEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhH------------------H
Q 013337 121 HWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHAL------------------S 182 (445)
Q Consensus 121 h~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~------------------a 182 (445)
-+-++|...-+-++++.|.. ..||.+.+.+.++-+.+.||.-|--+=+|.|-. .
T Consensus 26 PlFV~eg~~~~~~I~sMPG~--------~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~ 97 (314)
T cd00384 26 PLFVVEGIDEKEEISSMPGV--------YRLSVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQRAIRA 97 (314)
T ss_pred eEEEecCCCCccccCCCCCc--------eeeCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHHHHHHH
Confidence 34455666667778888876 459999999999999999999888877775521 1
Q ss_pred HHhhCCCC--------CC---CCCCCCCC---CCCChHHHHHHHHHHHHHhhhcCCceEEecCCcccccccc--CCHHHH
Q 013337 183 WGKGYPSL--------WP---SKDCQEPL---DVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWT--LTPHVS 246 (445)
Q Consensus 183 ~~~~ypel--------~~---~~~~~~~L---d~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~--~~p~~~ 246 (445)
+.+.+|+| |+ .+.|. .| .+.|++|.+.+.++---.+ .-|+|=+..+.-- .-..++
T Consensus 98 iK~~~p~l~vi~DvcLc~YT~hGHcG-il~~~~idND~Tl~~L~k~Als~A--------~AGADiVAPSdMMDGrV~aIR 168 (314)
T cd00384 98 IKEAVPELVVITDVCLCEYTDHGHCG-ILKDDYVDNDATLELLAKIAVSHA--------EAGADIVAPSDMMDGRVAAIR 168 (314)
T ss_pred HHHhCCCcEEEEeeeccCCCCCCcce-eccCCcCccHHHHHHHHHHHHHHH--------HcCCCeeecccccccHHHHHH
Confidence 22466776 11 01110 11 3568888887665443322 2466666443221 123677
Q ss_pred HHHHHCCCCh
Q 013337 247 KWLKEHSMNE 256 (445)
Q Consensus 247 ~~~~~~g~~~ 256 (445)
+.+.++|++.
T Consensus 169 ~aLd~~g~~~ 178 (314)
T cd00384 169 EALDEAGFSD 178 (314)
T ss_pred HHHHHCCCCC
Confidence 7777777753
No 139
>PRK09265 aminotransferase AlaT; Validated
Probab=30.31 E-value=76 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..+|.+++++|++.|+++|+-||-
T Consensus 182 G~~~~~~~~~~i~~~a~~~~~~ii~ 206 (404)
T PRK09265 182 GAVYSKELLEEIVEIARQHNLIIFA 206 (404)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4569999999999999999998774
No 140
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=30.17 E-value=55 Score=34.27 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=51.6
Q ss_pred eccccCCccceeeeecCCCCCChHHHHHHHHHHHHcCC----cEEEEEEecCCccceeeCCCCCCC---ccCCCCC--CC
Q 013337 80 KDGFSRFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKL----NVLHWHIVDTQSFPLEIPSYPKLW---DGAYSTS--ER 150 (445)
Q Consensus 80 ~~a~~rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~Kl----N~Lh~HltD~q~frle~~~~P~L~---~Gay~~~--~~ 150 (445)
.++..+++.-+|+==+=- -|.+.|++.++.+..+.- ++|=+||+- |-|+ ||+..+. ..
T Consensus 80 ~~~~~~~GtTsfLpT~iT--~~~e~i~~al~~~~e~~~~~ga~ilGiHLEG-----------P~ls~~kkGAh~~~~ir~ 146 (380)
T COG1820 80 AEAHLRHGTTSFLPTLIT--ASLEKIKAALRAIREAIAKGGAQILGIHLEG-----------PFLSPEKKGAHNPEYIRP 146 (380)
T ss_pred HHHhhhcCeeeeeeeccc--CCHHHHHHHHHHHHHHHhccCCceEEEEeec-----------CccCHhhccCCCHHHhCC
Confidence 344456776666432211 158888888888876655 789999854 4444 7874322 12
Q ss_pred CCHHHHHHHHHHHH--HcCCEEEeecC
Q 013337 151 YTMADAAEIVSYAQ--KRGINVLAELD 175 (445)
Q Consensus 151 YT~~ei~eiv~yA~--~rGI~VIPEID 175 (445)
-+.+|+.++++-|+ -+=|++=||.+
T Consensus 147 ~~~~~~~~~~~~a~g~i~~vTlAPE~~ 173 (380)
T COG1820 147 PDPEELEQLIAAADGLIKLVTLAPELD 173 (380)
T ss_pred CCHHHHHHHHhhccCceEEEEECCCCC
Confidence 46677777766665 33377779988
No 141
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=29.94 E-value=60 Score=33.37 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..||++++++|++.|+++++-||-
T Consensus 179 G~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 179 GAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCEEEEE
Confidence 5679999999999999999997773
No 142
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=29.79 E-value=88 Score=33.58 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCC
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 190 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel 190 (445)
..++++++.+++++|++.|++++-|+...-.....+..-+++
T Consensus 141 ~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~i 182 (454)
T PRK09427 141 SVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKV 182 (454)
T ss_pred HhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCE
Confidence 458999999999999999999999998888887776655544
No 143
>PRK07337 aminotransferase; Validated
Probab=29.73 E-value=81 Score=32.27 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
.+..+|.+|+++|++.|+++|+-||-+
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 176 TGTSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 346799999999999999999977743
No 144
>PLN02231 alanine transaminase
Probab=29.51 E-value=80 Score=34.47 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||++++++|++.|+++|+-||-
T Consensus 284 TG~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 284 TGQVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 35679999999999999999998875
No 145
>PLN02656 tyrosine transaminase
Probab=29.23 E-value=76 Score=32.95 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 148 SERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
+..+|++++++|++.|+++|+-||
T Consensus 183 G~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 183 GNVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 457999999999999999999877
No 146
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=29.16 E-value=1.6e+02 Score=30.54 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||.+++++|++.|+++++-||-
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~~~iI~ 214 (409)
T PRK07590 189 TGTVLTKEQLKAWVDYAKENGSLILF 214 (409)
T ss_pred cCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 35679999999999999999997774
No 147
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.16 E-value=3.8e+02 Score=26.63 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCch
Q 013337 101 PLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPG 178 (445)
Q Consensus 101 p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PG 178 (445)
+.+.+++.++.+...+.+.+-+.++.....+ . .......+|.++++++++.|+++|+.|.-......
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~----~-------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~ 184 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSP----G-------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAE 184 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCC----C-------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4788899999999999999988875421111 0 11123468999999999999999999887665433
No 148
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=28.97 E-value=1.6e+02 Score=30.67 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHc-CCEEEeecC
Q 013337 97 RHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR-GINVLAELD 175 (445)
Q Consensus 97 R~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~r-GI~VIPEID 175 (445)
...++.+.|+++++.++..+...+. ++- ++..-..|+.+|++++++. |+..| .|.
T Consensus 87 ~~~ls~eei~~~i~~~~~~Gv~~I~--~tG---------------------GEPllr~dl~eli~~l~~~~gi~~i-~it 142 (373)
T PLN02951 87 SHLLSQDEIVRLAGLFVAAGVDKIR--LTG---------------------GEPTLRKDIEDICLQLSSLKGLKTL-AMT 142 (373)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEE--EEC---------------------CCCcchhhHHHHHHHHHhcCCCceE-EEe
Confidence 3568999999999999887776554 332 2334456899999999997 87532 445
Q ss_pred Cchhh
Q 013337 176 VPGHA 180 (445)
Q Consensus 176 ~PGH~ 180 (445)
+-|..
T Consensus 143 TNG~l 147 (373)
T PLN02951 143 TNGIT 147 (373)
T ss_pred eCcch
Confidence 66654
No 149
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=28.92 E-value=1.9e+02 Score=30.31 Aligned_cols=153 Identities=10% Similarity=0.063 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecC
Q 013337 152 TMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGG 231 (445)
Q Consensus 152 T~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGg 231 (445)
..+-.+.+++-+.+.|+++++-+++-+++ .|+-. ....++ ++-.+++++++... ..+++|+
T Consensus 127 ~~~~~~~~~~a~~~~g~r~~~~~~~~~~~------~p~~~---------~~~~~~-~~~~~~~~~~~~~~---~~~~~~~ 187 (421)
T COG0402 127 VAESADAAFEAALEVGLRAVLGPVLQDVA------FPDPG---------AETDEE-LEETEELLREAHGL---GRDVVGL 187 (421)
T ss_pred hhhhHHHHHHHHHHhCCeeEeeeccccCC------CCccc---------ccchHH-HHHHHHHHHHHhcC---CCeeEEE
Confidence 34445678889999999999988888775 22211 111121 33333344333322 1344444
Q ss_pred CccccccccCCH----HHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeEEEecccccccCCCCCCCeEEEecCC-Cch
Q 013337 232 DEVNTSCWTLTP----HVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIVNWEETFNNFGNKLSPKTVVHNWLG-GGV 306 (445)
Q Consensus 232 DEv~~~~w~~~p----~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~~~W~d~~~~~~~~l~~~~ii~~W~~-~~~ 306 (445)
.-... ...++ .+.+..++.|+-..--...-...+....+..|++++.|.+..-. .. ++.+.++.++. ...
T Consensus 188 ~p~~~--~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~--l~-~~~~~~H~~~~~~~e 262 (421)
T COG0402 188 APHFP--YTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGL--LG-SHTLLAHCVHLSEEE 262 (421)
T ss_pred ecCCC--CCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCC--CC-CCeEEEEeccCCHHH
Confidence 43221 11122 22223332232110000000111222233578888888765421 12 45666776554 445
Q ss_pred HHHHHHcCCcEEEeCCCccccc
Q 013337 307 AQRVVAAGLRCIVSNQDKWYLD 328 (445)
Q Consensus 307 ~~~~~~~G~~vI~s~~~~~Yld 328 (445)
...++++|-.++.||-...+|.
T Consensus 263 ~~~l~~~g~~v~~cP~sN~~L~ 284 (421)
T COG0402 263 LELLAESGASVVHCPRSNLKLG 284 (421)
T ss_pred HHHHhhCCCeEEECcchhcccc
Confidence 6667789999999998877774
No 150
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=28.75 E-value=3.4e+02 Score=28.83 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=49.0
Q ss_pred cceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcC
Q 013337 88 FRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG 167 (445)
Q Consensus 88 ~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rG 167 (445)
+=|.|+-++.. |.+.++.....+.|.||+-+..-++|+ ...++.++++++.+.++++|
T Consensus 132 ~iGaHvSiaGG------~~~a~~~a~~~g~~afqiF~~npr~w~----------------~~~~~~~~~~~f~~~~~~~g 189 (413)
T PTZ00372 132 YIGAHVSASGG------VDNSPINAYNIAGQAFALFLKNQRTWN----------------SPPLSDETIDKFKENCKKYN 189 (413)
T ss_pred eEEEEEecccc------HHHHHHHHHHcCCCEEEEEcCCCccCC----------------CCCCCHHHHHHHHHHHHHcC
Confidence 44788877743 566788888899999999776666663 23489999999999999999
Q ss_pred CEEEe
Q 013337 168 INVLA 172 (445)
Q Consensus 168 I~VIP 172 (445)
|.+.|
T Consensus 190 i~~~~ 194 (413)
T PTZ00372 190 YDPKF 194 (413)
T ss_pred CCcce
Confidence 97543
No 151
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.70 E-value=1.5e+02 Score=28.73 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEecCCccce-e-----e-CCCCCCCccCCCCCCCCCHHHH----------------
Q 013337 100 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPL-E-----I-PSYPKLWDGAYSTSERYTMADA---------------- 156 (445)
Q Consensus 100 ~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frl-e-----~-~~~P~L~~Gay~~~~~YT~~ei---------------- 156 (445)
.+.+...++++.+..-++..+-+=++..++... + . .+||++..|+ +..+|.+++
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGa---GTVl~~e~a~~a~~aGA~FiVsP~~ 100 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGV---GSIVDAATAALYIQLGANFIVTPLF 100 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEee---EeCcCHHHHHHHHHcCCCEEECCCC
Confidence 368889999999999999998888866655431 1 1 4688887665 334555555
Q ss_pred -HHHHHHHHHcCCEEEeecCCchhhHHHHh
Q 013337 157 -AEIVSYAQKRGINVLAELDVPGHALSWGK 185 (445)
Q Consensus 157 -~eiv~yA~~rGI~VIPEID~PGH~~a~~~ 185 (445)
.+|+++|+++||-+||-+=+|.-......
T Consensus 101 ~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~ 130 (222)
T PRK07114 101 NPDIAKVCNRRKVPYSPGCGSLSEIGYAEE 130 (222)
T ss_pred CHHHHHHHHHcCCCEeCCCCCHHHHHHHHH
Confidence 46889999999999999999998876543
No 152
>COG5587 Uncharacterized conserved protein [Function unknown]
Probab=28.20 E-value=82 Score=29.62 Aligned_cols=51 Identities=8% Similarity=0.274 Sum_probs=34.7
Q ss_pred CceEEecCCcccc--ccccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeE
Q 013337 224 YKFVHLGGDEVNT--SCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEI 278 (445)
Q Consensus 224 ~~~~HiGgDEv~~--~~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~ 278 (445)
+=|||||-||++. .-|.-...++..|++.=++..+.+. .+.+-++++|.+.
T Consensus 104 ~FYI~igl~gcfagvawWqP~~~ll~amR~aI~~~Pd~fr----amv~~lkkngl~l 156 (228)
T COG5587 104 SFYIQIGLDGCFAGVAWWQPASDLLRAMRQAIFDNPDSFR----AMVDPLKKNGLTL 156 (228)
T ss_pred cEEEEecCCcceeeeeeeCcHHHHHHHHHHHHhcCcHHHH----HHHhHHHhCCcee
Confidence 4699999999875 3476666777778775554445553 4556667777653
No 153
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=28.19 E-value=81 Score=32.28 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
.+..||.+++++|++.|+++|+-||
T Consensus 178 TG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 178 TTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred CCccCCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999998777
No 154
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=28.12 E-value=4.2e+02 Score=28.06 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHH-HcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHc-----CCEEEeecC
Q 013337 102 LPIIKNVIDSMA-YAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR-----GINVLAELD 175 (445)
Q Consensus 102 ~~~lk~~Id~Ma-~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~r-----GI~VIPEID 175 (445)
-+.|++.|+.+. .+|-..+-+.- ..-|++ --+|+..+++-++++ |+.||| ++
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~t----------tC~~ei-----------IGDDi~~v~~~~~~e~p~~~~~pvi~-v~ 133 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLS----------TGLTET-----------RGEDIARVVRQFREKHPQHKGTAVVT-VN 133 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeC----------CCcccc-----------cccCHHHHHHHHHhhcccccCCeEEE-ec
Confidence 456776666553 56666555432 122332 346999999888774 999998 88
Q ss_pred CchhhHHH
Q 013337 176 VPGHALSW 183 (445)
Q Consensus 176 ~PGH~~a~ 183 (445)
+||=.++.
T Consensus 134 tpgf~g~~ 141 (432)
T TIGR01285 134 TPDFKGSL 141 (432)
T ss_pred CCCcCCch
Confidence 88766543
No 155
>PRK02227 hypothetical protein; Provisional
Probab=27.80 E-value=73 Score=31.19 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=28.9
Q ss_pred CCccceeeeecCCC-------CCChHHHHHHHHHHHHcCCc
Q 013337 85 RFSFRGLLIDTSRH-------YQPLPIIKNVIDSMAYAKLN 118 (445)
Q Consensus 85 rf~~RGlmLD~aR~-------f~p~~~lk~~Id~Ma~~KlN 118 (445)
+-++.|+||||+-+ |++++.|.++++.-..+.+-
T Consensus 142 ~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~ 182 (238)
T PRK02227 142 DAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLM 182 (238)
T ss_pred HcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccH
Confidence 57889999999865 78999999999988777654
No 156
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=27.75 E-value=5.2e+02 Score=26.44 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCccc-eeeCCCCCCC-----ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCch
Q 013337 105 IKNVIDSMAYAKLNVLHWHIVDTQSFP-LEIPSYPKLW-----DGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPG 178 (445)
Q Consensus 105 lk~~Id~Ma~~KlN~Lh~HltD~q~fr-le~~~~P~L~-----~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PG 178 (445)
=|++|+.|-.+++=+=-=|++|.--|- +++...|-+. +.-+.+..-+|.++++.|++-----||+.+|.+-.||
T Consensus 151 Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~fl~~~ 230 (313)
T COG2355 151 GKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPAFLRPG 230 (313)
T ss_pred HHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehhhccCC
Confidence 345555555555544444555543322 2334444443 1223445569999999999999999999999988872
Q ss_pred hhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCccccc----cccC---CHHHHHHHHH
Q 013337 179 HALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTS----CWTL---TPHVSKWLKE 251 (445)
Q Consensus 179 H~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~----~w~~---~p~~~~~~~~ 251 (445)
- ... .+.+=+-+=++.+.+++--+.+=||.|=.... .++. .|.+.+.+.+
T Consensus 231 ~-----~~~------------------atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~~ 287 (313)
T COG2355 231 G-----AAR------------------ATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALIE 287 (313)
T ss_pred C-----CCC------------------CCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHHHH
Confidence 2 001 12222333345667777778888888743221 2333 3455556667
Q ss_pred CCCChhHH
Q 013337 252 HSMNESQA 259 (445)
Q Consensus 252 ~g~~~~~l 259 (445)
+|++..++
T Consensus 288 ~G~~e~~i 295 (313)
T COG2355 288 RGYSEEEI 295 (313)
T ss_pred cCCCHHHH
Confidence 78876543
No 157
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=27.72 E-value=77 Score=26.46 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcC--CEEEeecC
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRG--INVLAELD 175 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rG--I~VIPEID 175 (445)
...+.+.+.+.|+.++.......+++++..+ |-| ++..+++.++++++++++ +.|. |.
T Consensus 27 ~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGE---------Pll---------~~~~~~l~~~i~~~~~~~~~~~i~--i~ 86 (119)
T PF13394_consen 27 EEMSIEELEEIIDELKEKGFRPSTVVFTGGE---------PLL---------YLNPEDLIELIEYLKERGPEIKIR--IE 86 (119)
T ss_dssp GS--HHHHHHHHHHHHHTT----EEEEESSS---------GGG---------STTHHHHHHHHCTSTT-----EEE--EE
T ss_pred CcccHhHHHHHHHHHHhcCCceEEEEEECCC---------Ccc---------ccCHHHHHHHHHHHHhhCCCceEE--EE
Confidence 4568999999999999888887788887532 333 145789999999999999 6665 44
Q ss_pred CchhhH
Q 013337 176 VPGHAL 181 (445)
Q Consensus 176 ~PGH~~ 181 (445)
|=|...
T Consensus 87 TNg~~~ 92 (119)
T PF13394_consen 87 TNGTLP 92 (119)
T ss_dssp E-STTH
T ss_pred eCCeec
Confidence 445443
No 158
>PLN02187 rooty/superroot1
Probab=27.51 E-value=92 Score=33.19 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..||++++++|++.|+++||-||-
T Consensus 217 TG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 217 CGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 35679999999999999999998874
No 159
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=27.19 E-value=94 Score=31.69 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
.+..||.+++++|++.|+++|+-||
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 177 TGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred cCccCCHHHHHHHHHHHHHcCEEEE
Confidence 3457999999999999999999776
No 160
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=26.92 E-value=68 Score=32.89 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCC
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKY 224 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~ 224 (445)
..++|+-+-...|++||+++|.. +=||+.-|-...|+.... .+.+.+.+.+.+++=|.-++.-|+.
T Consensus 75 ~~G~f~Fe~AD~ia~FAr~h~m~------lhGHtLvW~~q~P~W~~~------~e~~~~~~~~~~e~hI~tV~~rYkg 140 (345)
T COG3693 75 ERGRFNFEAADAIANFARKHNMP------LHGHTLVWHSQVPDWLFG------DELSKEALAKMVEEHIKTVVGRYKG 140 (345)
T ss_pred CCCccCccchHHHHHHHHHcCCe------eccceeeecccCCchhhc------cccChHHHHHHHHHHHHHHHHhccC
Confidence 35677777788999999999985 479998887766665322 2356788888888888888777764
No 161
>PRK08636 aspartate aminotransferase; Provisional
Probab=26.87 E-value=1.7e+02 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
.+..||.+++++|++.|+++++-||
T Consensus 188 TG~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 188 TTATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEE
Confidence 3567999999999999999999887
No 162
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=26.67 E-value=1.1e+02 Score=31.42 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=53.3
Q ss_pred cCCCCC-ChHHHHHHHHHHHHcCCcE--EEEEEecCCccceeeCCCCC-------CCccC--C--CCCCCCCHHHHHHHH
Q 013337 95 TSRHYQ-PLPIIKNVIDSMAYAKLNV--LHWHIVDTQSFPLEIPSYPK-------LWDGA--Y--STSERYTMADAAEIV 160 (445)
Q Consensus 95 ~aR~f~-p~~~lk~~Id~Ma~~KlN~--Lh~HltD~q~frle~~~~P~-------L~~Ga--y--~~~~~YT~~ei~eiv 160 (445)
+|-|+- +++.-|++||..+..+... ||.+..|+. -.+..+. .|.|. | -..-.++.+++++|.
T Consensus 7 ig~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~ 82 (329)
T TIGR03569 7 AGVNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDL----VSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELK 82 (329)
T ss_pred eCCCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHh----hCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHH
Confidence 333443 6999999999999988874 455433331 1111111 22221 0 012348899999999
Q ss_pred HHHHHcCCEEEeecCCchhhHHH
Q 013337 161 SYAQKRGINVLAELDVPGHALSW 183 (445)
Q Consensus 161 ~yA~~rGI~VIPEID~PGH~~a~ 183 (445)
+||++.||.++-+.=-..+....
T Consensus 83 ~~~~~~Gi~~~stpfd~~svd~l 105 (329)
T TIGR03569 83 EYCESKGIEFLSTPFDLESADFL 105 (329)
T ss_pred HHHHHhCCcEEEEeCCHHHHHHH
Confidence 99999999999885555554433
No 163
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.47 E-value=62 Score=31.70 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEee
Q 013337 150 RYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 150 ~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
.+|.+++++|.+||+++||..+-.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~st 75 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFST 75 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEC
Confidence 489999999999999999987754
No 164
>PRK01060 endonuclease IV; Provisional
Probab=26.37 E-value=1.4e+02 Score=28.97 Aligned_cols=83 Identities=14% Similarity=0.069 Sum_probs=43.0
Q ss_pred ceeeeecCCCCCCh----HHHHHHHHHHHHcCC--cEEEEEEecCCccce-eeCCCCCCCccCCCCCCCCCHHHHHHHHH
Q 013337 89 RGLLIDTSRHYQPL----PIIKNVIDSMAYAKL--NVLHWHIVDTQSFPL-EIPSYPKLWDGAYSTSERYTMADAAEIVS 161 (445)
Q Consensus 89 RGlmLD~aR~f~p~----~~lk~~Id~Ma~~Kl--N~Lh~HltD~q~frl-e~~~~P~L~~Gay~~~~~YT~~ei~eiv~ 161 (445)
=|+.+|++.-+..= +..+++++.+...-. ...|+|+.|..+-.- ..+.+=.+ +.+...-+++..+++
T Consensus 174 vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~~~~~d~H~~~------G~G~id~~~~~~~L~ 247 (281)
T PRK01060 174 VGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEFGSRKDRHANL------GEGTIGFDALRYIVH 247 (281)
T ss_pred EEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcccCCCCcccCC------cCCcCCHHHHHHHHh
Confidence 49999999765432 344477777765322 566777777643100 00001111 123344444444444
Q ss_pred HHHHcCCEEEeecCCc
Q 013337 162 YAQKRGINVLAELDVP 177 (445)
Q Consensus 162 yA~~rGI~VIPEID~P 177 (445)
-..-.|+.++-|.-.+
T Consensus 248 ~~~y~g~~l~lE~~~~ 263 (281)
T PRK01060 248 DPRFDGIPKILETPYV 263 (281)
T ss_pred CcccCCCeEEEeCCCC
Confidence 3333477888886444
No 165
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=26.31 E-value=94 Score=33.51 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..||.+++++|++.|+++++-||-
T Consensus 295 G~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 295 GALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 4579999999999999999997774
No 166
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=26.21 E-value=1.3e+02 Score=31.14 Aligned_cols=42 Identities=12% Similarity=-0.052 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhh-CCCC
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKG-YPSL 190 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~-ypel 190 (445)
..++.+++++++++|++.|++++-|+-..--..-.+.. -+++
T Consensus 212 aiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~i 254 (338)
T PLN02460 212 AVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVEL 254 (338)
T ss_pred HhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCE
Confidence 46899999999999999999999999877777666653 3444
No 167
>PRK07681 aspartate aminotransferase; Provisional
Probab=26.15 E-value=99 Score=31.85 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
.+..+|++++++|++.|+++|+-||
T Consensus 179 TG~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 179 VPAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred cCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999999777
No 168
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.09 E-value=2.1e+02 Score=21.34 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 013337 103 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELD 175 (445)
Q Consensus 103 ~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID 175 (445)
..++++++.....+++.+= +||... -....++.+++++.||.|||-++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~--iTDh~~-----------------------~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 15 LSPEELVKRAKELGLKAIA--ITDHGN-----------------------LFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CCHHHHHHHHHHcCCCEEE--EeeCCc-----------------------ccCHHHHHHHHHHcCCeEEEEEE
Confidence 3467788888888888866 566421 11234566777889999999443
No 169
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.89 E-value=3.3e+02 Score=27.90 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=53.5
Q ss_pred cCCCCC-ChHHHHHHHHHHHHcCCcE--EEEEEecCCccceeeCCCCC--CCc-cCCC--------CCCCCCHHHHHHHH
Q 013337 95 TSRHYQ-PLPIIKNVIDSMAYAKLNV--LHWHIVDTQSFPLEIPSYPK--LWD-GAYS--------TSERYTMADAAEIV 160 (445)
Q Consensus 95 ~aR~f~-p~~~lk~~Id~Ma~~KlN~--Lh~HltD~q~frle~~~~P~--L~~-Gay~--------~~~~YT~~ei~eiv 160 (445)
++-|+- +++..|++||..+...-+. ||.+-.|.- -++..++ ..+ +.|. ..-.++.++.++|.
T Consensus 8 iG~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~ 83 (327)
T TIGR03586 8 LSANHNGSLERALAMIEAAKAAGADAIKLQTYTPDTI----TLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELF 83 (327)
T ss_pred ECCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHh----hccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHH
Confidence 333443 6999999999999999884 555433321 1111111 000 1121 01247889999999
Q ss_pred HHHHHcCCEEEeecCCchhhHHH
Q 013337 161 SYAQKRGINVLAELDVPGHALSW 183 (445)
Q Consensus 161 ~yA~~rGI~VIPEID~PGH~~a~ 183 (445)
+||+++||.++-++=-..+....
T Consensus 84 ~~~~~~Gi~~~stpfd~~svd~l 106 (327)
T TIGR03586 84 ERAKELGLTIFSSPFDETAVDFL 106 (327)
T ss_pred HHHHHhCCcEEEccCCHHHHHHH
Confidence 99999999999886666655543
No 170
>PRK09989 hypothetical protein; Provisional
Probab=25.67 E-value=1.5e+02 Score=28.62 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=47.4
Q ss_pred ccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHc
Q 013337 87 SFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKR 166 (445)
Q Consensus 87 ~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~r 166 (445)
+.=|+++|+..-+..=..+..+|+.. +=-..|+|+.|... + ..| -.|. =++.++++..++.
T Consensus 171 ~~v~l~lD~~h~~~~~~~~~~~i~~~---~~ri~hvHi~D~~~-~----~~p--G~G~---------id~~~i~~al~~~ 231 (258)
T PRK09989 171 DNVFIQLDTFHAQKVDGNLTHLIRDY---AGKYAHVQIAGLPD-R----HEP--DDGE---------INYPWLFRLFDEV 231 (258)
T ss_pred CCeEEEeehHhHHHcCCCHHHHHHHh---hhhEEEEEECCCCC-C----CCC--CCCC---------cCHHHHHHHHHHc
Confidence 45699999975443312233344332 22355999988321 1 111 1121 2677788888888
Q ss_pred CCE--EEeecCCchhhHHHHh
Q 013337 167 GIN--VLAELDVPGHALSWGK 185 (445)
Q Consensus 167 GI~--VIPEID~PGH~~a~~~ 185 (445)
|.+ |..|.--.||+...++
T Consensus 232 Gy~g~is~E~~~~~~~~~~~~ 252 (258)
T PRK09989 232 GYQGWIGCEYKPRGLTEEGLG 252 (258)
T ss_pred CCCeEEEEEEeeCCCCHHHHH
Confidence 875 7788888888776554
No 171
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=25.53 E-value=5.8e+02 Score=26.05 Aligned_cols=101 Identities=9% Similarity=0.061 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCch
Q 013337 99 YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPG 178 (445)
Q Consensus 99 f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PG 178 (445)
|.+-+.++++++.+...++-.=.+++..+-- ..+-..+ + ....+ .|.+++++.-+++|+.+|+-++---
T Consensus 20 Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~-----~~~~~Ft---~-d~~~F--Pdp~~mv~~L~~~G~klv~~i~P~i 88 (332)
T cd06601 20 YSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQ-----DNYRTFT---T-NGGGF--PNPKEMFDNLHNKGLKCSTNITPVI 88 (332)
T ss_pred CCCHHHHHHHHHHHHHcCCCCceEEEcCchh-----cCCCcee---e-cCCCC--CCHHHHHHHHHHCCCeEEEEecCce
Confidence 4588999999999999988755555543310 1121111 0 11122 3567888899999999998877332
Q ss_pred hhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHh
Q 013337 179 HALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFS 219 (445)
Q Consensus 179 H~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~ 219 (445)
+ +-..++.. ..-.|.++|++.+.-.+.++.+.
T Consensus 89 ~-------~g~~~~~~--~~~pDftnp~ar~wW~~~~~~l~ 120 (332)
T cd06601 89 S-------YGGGLGSP--GLYPDLGRPDVREWWGNQYKYLF 120 (332)
T ss_pred e-------cCccCCCC--ceeeCCCCHHHHHHHHHHHHHHH
Confidence 2 11122211 22468999999998888777664
No 172
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.47 E-value=6.2e+02 Score=24.47 Aligned_cols=132 Identities=9% Similarity=0.171 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHH
Q 013337 103 PIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALS 182 (445)
Q Consensus 103 ~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a 182 (445)
..+.+.++.++.+.+..+-+.+.+.. ..+ ....+|.++++++.+..+++||+|.-- .+.+|..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~---------~~~------~~~~~~~~~~~~~~~~l~~~gl~i~~~-~~~~~~~- 78 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETD---------DRL------SRLDWSREQRLALVNAIIETGVRIPSM-CLSAHRR- 78 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCcc---------chh------hccCCCHHHHHHHHHHHHHcCCCceee-ecCCCcc-
Confidence 34667778888888888777432210 001 112378999999999999999987632 2222211
Q ss_pred HHhhCCCCCCCCCCCCCCCCCCh----HHHHHHHHHHHHHhhhcCCceEEecCCccccccccCCHHHHHHHHHCCCChhH
Q 013337 183 WGKGYPSLWPSKDCQEPLDVSNE----FTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQ 258 (445)
Q Consensus 183 ~~~~ypel~~~~~~~~~Ld~~~~----~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~ 258 (445)
++ +-..++ +..+.++..++- +..+..+++.+++=+... .... .+ ..+
T Consensus 79 ----~~-----------l~~~~~~~r~~~~~~~~~~i~~-a~~lG~~~v~~~~~~~~~---~~~~--~~--------~~~ 129 (279)
T TIGR00542 79 ----FP-----------LGSKDKAVRQQGLEIMEKAIQL-ARDLGIRTIQLAGYDVYY---EEHD--EE--------TRR 129 (279)
T ss_pred ----Cc-----------CCCcCHHHHHHHHHHHHHHHHH-HHHhCCCEEEecCccccc---CcCC--HH--------HHH
Confidence 11 111123 344555555543 334456777776522211 0000 00 012
Q ss_pred HHHHHHHHHHHHHHHcCCeEEE
Q 013337 259 AYQYFVLQAQKIALLHGYEIVN 280 (445)
Q Consensus 259 l~~~F~~~l~~~v~~~G~~~~~ 280 (445)
.+...++++.++++++|.+..+
T Consensus 130 ~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 130 RFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHcCCEEEE
Confidence 3345567778888899986544
No 173
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=25.27 E-value=4.2e+02 Score=31.58 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchh
Q 013337 100 QPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGH 179 (445)
Q Consensus 100 ~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH 179 (445)
.+.+.+++-|..|..+.+|.+-.|- ||.- ..+.+.|.++||-|+-|+|+..|
T Consensus 352 ~~~e~~~~dl~lmK~~g~NavR~sH------------yP~~----------------~~fydlcDe~GllV~dE~~~e~~ 403 (1021)
T PRK10340 352 VGMDRVEKDIQLMKQHNINSVRTAH------------YPND----------------PRFYELCDIYGLFVMAETDVESH 403 (1021)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecC------------CCCC----------------HHHHHHHHHCCCEEEECCccccc
Confidence 5788999999999999999987642 2321 24577899999999999998777
Q ss_pred h
Q 013337 180 A 180 (445)
Q Consensus 180 ~ 180 (445)
.
T Consensus 404 g 404 (1021)
T PRK10340 404 G 404 (1021)
T ss_pred C
Confidence 5
No 174
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=25.24 E-value=89 Score=29.97 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Q 013337 149 ERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
...|.+++.++.+++++.|++++
T Consensus 223 ~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 223 KPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCHHHHHHHHHHHHHcCCccc
Confidence 45899999999999999999874
No 175
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=25.08 E-value=2.8e+02 Score=26.70 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=49.0
Q ss_pred ccceeeeecCCCCCC------hHHHHHHHHHHHHc-CC-cEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHH
Q 013337 87 SFRGLLIDTSRHYQP------LPIIKNVIDSMAYA-KL-NVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAE 158 (445)
Q Consensus 87 ~~RGlmLD~aR~f~p------~~~lk~~Id~Ma~~-Kl-N~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~e 158 (445)
+.=|+++|++.-+.. .+.+.++|+.+... +. -..|+|+.|+.+-+ .....--+.- +.+..--+.+..
T Consensus 166 ~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~~-g~~~d~H~~~----G~G~id~~~~~~ 240 (273)
T smart00518 166 DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIEL-GSGKDRHENL----GEGYIGFEPFRL 240 (273)
T ss_pred CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCcc-CCCCccccCC----CCCCCChHHHHH
Confidence 566999999975532 44567777766532 21 35677787874321 1011111111 224455556666
Q ss_pred HHHHHHHcCCEEEeecCC
Q 013337 159 IVSYAQKRGINVLAELDV 176 (445)
Q Consensus 159 iv~yA~~rGI~VIPEID~ 176 (445)
++...+-.|+.+|-|.-.
T Consensus 241 ~l~~~~~~~~~~~lE~~~ 258 (273)
T smart00518 241 LMADKRFDGIPLILETPP 258 (273)
T ss_pred HhhChhhcCCcEEEeCCC
Confidence 666777777788888766
No 176
>PRK09505 malS alpha-amylase; Reviewed
Probab=24.96 E-value=69 Score=36.21 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEe-cC-Ccccee--eCCCCCCC-ccCC-----C-CCCCCCHHHHHHHHHHHHHcCCEE
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIV-DT-QSFPLE--IPSYPKLW-DGAY-----S-TSERYTMADAAEIVSYAQKRGINV 170 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~Hlt-D~-q~frle--~~~~P~L~-~Gay-----~-~~~~YT~~ei~eiv~yA~~rGI~V 170 (445)
+.-|.+-||.+..+++|.+.+=-. ++ .++.-. .-.+|.-+ .|-+ . ...+=|.+|+++||+-|.+|||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 666888899999999999875311 00 000000 00011111 0100 0 122237899999999999999999
Q ss_pred EeecCCchhhH
Q 013337 171 LAELDVPGHAL 181 (445)
Q Consensus 171 IPEID~PGH~~ 181 (445)
|-.+ ++.|+.
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9887 467776
No 177
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=24.90 E-value=1.2e+02 Score=34.42 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCC
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 190 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel 190 (445)
..++.+++++|+++|++.|++++-|+-..-.....++.-+++
T Consensus 142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~i 183 (695)
T PRK13802 142 AALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKV 183 (695)
T ss_pred hhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 458999999999999999999999998888887776654444
No 178
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.81 E-value=95 Score=30.23 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
++.+++.|+..+.++...+-++ +++.. ..... ........+.+++|.++|++.||.|.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~-----~~~~~----~~~~~---~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA-----GYDVY----YEQAN---NETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-----Ccccc----ccccH---HHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 5679999999999999988764 21100 00000 00011345788999999999999999995
No 179
>PRK05764 aspartate aminotransferase; Provisional
Probab=24.73 E-value=1e+02 Score=31.48 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..+|.+++++|++.|+++||-||=
T Consensus 178 G~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 178 GAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred CcccCHHHHHHHHHHHHHCCcEEEE
Confidence 4568999999999999999998874
No 180
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=24.66 E-value=2.3e+02 Score=27.72 Aligned_cols=68 Identities=13% Similarity=0.295 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCC-CCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 99 YQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYS-TSERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 99 f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~-~~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
+.+-+.++++++.+..+++..=.+++.++-.- .+-.. + ++ ....+ .+.+++++..+++|++|++-|+-
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~-----~~~~f--~-~~~d~~~F--pdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTD-----GYGDF--T-FDWDAGKF--PNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECccccc-----CCcee--e-eecChhhC--CCHHHHHHHHHHCCCEEEEEeCh
Confidence 56899999999999999999777777654211 11111 0 00 01122 35789999999999999997754
No 181
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.50 E-value=96 Score=29.93 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=47.4
Q ss_pred ccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCC--CCCHHHHHHHHHHHH
Q 013337 87 SFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSE--RYTMADAAEIVSYAQ 164 (445)
Q Consensus 87 ~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~--~YT~~ei~eiv~yA~ 164 (445)
..|++-+|.++.-.-.+.+++.|+.+..+....+..+.... + +.. +... ....+.++++.++|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~---~------~~~-----~~~~~~~~~~~~l~~l~~~a~ 134 (258)
T PRK09997 69 GERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKT---P------AGF-----SSEQIHATLVENLRYAANMLM 134 (258)
T ss_pred CcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCC---C------CCC-----CHHHHHHHHHHHHHHHHHHHH
Confidence 34555455553322257799999999999999876643110 0 000 0011 234577899999999
Q ss_pred HcCCEEEeec
Q 013337 165 KRGINVLAEL 174 (445)
Q Consensus 165 ~rGI~VIPEI 174 (445)
++||++.-|-
T Consensus 135 ~~Gv~l~lE~ 144 (258)
T PRK09997 135 KEDILLLIEP 144 (258)
T ss_pred HcCCEEEEEe
Confidence 9999999983
No 182
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.47 E-value=1.1e+02 Score=32.54 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHc--CCEEEee
Q 013337 149 ERYTMADAAEIVSYAQKR--GINVLAE 173 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~r--GI~VIPE 173 (445)
..||.+++.++++.+++. ||.|-..
T Consensus 288 R~~t~e~~~~~v~~ir~~~pgi~i~~d 314 (455)
T PRK14335 288 RSYTREHYLSLVGKLKASIPNVALSTD 314 (455)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 459999999999999998 7766544
No 183
>PRK08960 hypothetical protein; Provisional
Probab=24.34 E-value=1e+02 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.+..+|.+++++|++.|+++|+-||-
T Consensus 178 tG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 178 TGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 35679999999999999999997774
No 184
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=24.18 E-value=1.1e+02 Score=31.51 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..+|++++++|++.|+++++-||=
T Consensus 186 G~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 186 GADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 4579999999999999999998874
No 185
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=24.08 E-value=76 Score=25.20 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHHHhhCCCC
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAELDVPGHALSWGKGYPSL 190 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~~~~ypel 190 (445)
.-+.+.=+++.++||+++|..|+|. ..=+..+++.+|++
T Consensus 37 qGia~~L~~~~l~~a~~~~~kv~p~---C~y~~~~~~~hpey 75 (78)
T PF14542_consen 37 QGIAKKLVEAALDYARENGLKVVPT---CSYVAKYFRRHPEY 75 (78)
T ss_dssp TTHHHHHHHHHHHHHHHTT-EEEET---SHHHHHHHHH-GGG
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEE---CHHHHHHHHhCccc
Confidence 3478889999999999999999996 33344566777764
No 186
>PRK07324 transaminase; Validated
Probab=23.95 E-value=1.2e+02 Score=31.00 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
+..+|++++++|++.|+++|+-||-.
T Consensus 167 G~~~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 167 GALMDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45699999999999999999988753
No 187
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=23.89 E-value=47 Score=25.92 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCEE
Q 013337 148 SERYTMADAAEIVSYAQK-RGINV 170 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~-rGI~V 170 (445)
++++|+.|+++|.+-.++ +||.+
T Consensus 2 RH~LSkKe~k~~~~k~~~~ygIdi 25 (65)
T PF09183_consen 2 RHFLSKKEIKEIKEKIKEKYGIDI 25 (65)
T ss_dssp -EE--HHHHHHHHHHHHT-TT---
T ss_pred cccccHHHHHHHHHHHHHHhCcCC
No 188
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=23.71 E-value=1.7e+02 Score=24.70 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDV 176 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~ 176 (445)
...+.++=..|...+++. =++|+.|=+-|++ .+.|.--...+++|++++++-..+-....-|||++
T Consensus 20 l~d~~~L~~~lt~~GF~~---tl~D~~G~~HeLg------tntfgl~S~l~~~eV~~la~~lae~algk~p~V~V 85 (96)
T PF11080_consen 20 LTDINELNNHLTRAGFST---TLTDEDGNPHELG------TNTFGLISALSAEEVAQLARGLAESALGKTPEVEV 85 (96)
T ss_pred hHHHHHHHHHHHhcCcee---EEecCCCCEeecC------CCeEEEEecCCHHHHHHHHHHHhhhhcCCCCceEE
Confidence 677788888888888774 6889988765543 23443445689999999999887766666677665
No 189
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=23.52 E-value=7.8e+02 Score=24.93 Aligned_cols=154 Identities=15% Similarity=0.191 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCC-HHHH-HHHH-HHHHHcCCEEEeec-----C
Q 013337 104 IIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYT-MADA-AEIV-SYAQKRGINVLAEL-----D 175 (445)
Q Consensus 104 ~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT-~~ei-~eiv-~yA~~rGI~VIPEI-----D 175 (445)
-|-++|+.|..+|.|++-+-.-.|. .--....+.|-++..+. ++|+ -.++ ++..+.|+.|.-.. |
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~-------~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~ 90 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADP-------DGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFD 90 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCC-------CCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhcc
Confidence 3778999999999998887654332 10111233444444443 4454 3444 56678899997664 4
Q ss_pred CchhhHHHHhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhh--cCCceEEecCCccccccccCCHHHHHHHHHCC
Q 013337 176 VPGHALSWGKGYPSLWPSKDCQEPLDVSNEFTFKVIDGILSDFSKV--FKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHS 253 (445)
Q Consensus 176 ~PGH~~a~~~~ypel~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~l--Fp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g 253 (445)
.|+... +...-.. .+....-..|.|-+|++.+.|++|+++++.- |.+=.|| |+...+..+ .++++ +++
T Consensus 91 lp~~~~-~~~~~~~-~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFh---DDa~L~D~E-~~~~~----~~~ 160 (294)
T PF14883_consen 91 LPKVKR-ADEVRTD-RPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFH---DDAVLSDFE-IAAIR----QNP 160 (294)
T ss_pred CCCcch-hhhcccc-CCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEc---CCccccchh-hhhhc----cCh
Confidence 444221 1000000 1111122358899999999999999999874 5555555 222111111 12221 111
Q ss_pred CC--hhHHHHHHHHHHHHHHHHc
Q 013337 254 MN--ESQAYQYFVLQAQKIALLH 274 (445)
Q Consensus 254 ~~--~~~l~~~F~~~l~~~v~~~ 274 (445)
.+ ..+.+..|...+.+.++..
T Consensus 161 ~~~~Kt~~Li~ft~eL~~~v~~~ 183 (294)
T PF14883_consen 161 ADRQKTRALIDFTMELAAAVRRY 183 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1267789999999988875
No 190
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=23.51 E-value=61 Score=34.42 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCEE-------------EeecCCchhhHH
Q 013337 154 ADAAEIVSYAQKRGINV-------------LAELDVPGHALS 182 (445)
Q Consensus 154 ~ei~eiv~yA~~rGI~V-------------IPEID~PGH~~a 182 (445)
+-+.++.+.-++|||+| |--||+|||...
T Consensus 74 dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 74 DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34667778889999998 567999999874
No 191
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.25 E-value=84 Score=26.85 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=36.4
Q ss_pred eecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 93 IDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 93 LD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
+|++=-+.|.+.+-.+++.+...+...+-++.. ++-++++++|++.||+|+
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT----------------------------S--HHHHHHHHHTT-EEE
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc----------------------------hHHHHHHHHHHHcCCEEE
Confidence 566666788999999999999999888776531 356789999999999998
No 192
>PRK10425 DNase TatD; Provisional
Probab=23.20 E-value=6.9e+02 Score=24.40 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCEEE--eecCCchhhHHHH---hhCCCCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhhhcCC-c
Q 013337 154 ADAAEIVSYAQKRGINVL--AELDVPGHALSWG---KGYPSLWPSKDCQEPLDVS--NEFTFKVIDGILSDFSKVFKY-K 225 (445)
Q Consensus 154 ~ei~eiv~yA~~rGI~VI--PEID~PGH~~a~~---~~ypel~~~~~~~~~Ld~~--~~~t~~fl~~ll~E~~~lFp~-~ 225 (445)
+|+.++++-|++.||.-| +-.+ |.+....+ +.||.+.+.- .-+|-+.. .++..+.+..+ ... +
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~~v~~~~-GiHP~~~~~~~~~~~~~l~~~-------~~~~~ 85 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYPSCWSTA-GVHPHDSSQWQAATEEAIIEL-------AAQPE 85 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCCCEEEEE-EeCcCccccCCHHHHHHHHHh-------ccCCC
Confidence 478899999999998433 3333 44444332 3677653210 01122211 13333322222 222 2
Q ss_pred e--E-EecCCccccccccCCHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHcCCeEE-----EecccccccCCCCC--CC
Q 013337 226 F--V-HLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQYFVLQAQKIALLHGYEIV-----NWEETFNNFGNKLS--PK 295 (445)
Q Consensus 226 ~--~-HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~F~~~l~~~v~~~G~~~~-----~W~d~~~~~~~~l~--~~ 295 (445)
. | =||-|-. |... ..+.+..++.+..++++++++-++ .|+|.+.-.....+ +.
T Consensus 86 ~vaIGEiGLDy~----~~~~-------------~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~ 148 (258)
T PRK10425 86 VVAIGECGLDFN----RNFS-------------TPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPG 148 (258)
T ss_pred EEEEeeeeeccc----cCCC-------------CHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCC
Confidence 2 2 3556654 1111 113344555556677888887655 56665532211111 35
Q ss_pred eEEEecCCC-chHHHHHHcCCcEEEe
Q 013337 296 TVVHNWLGG-GVAQRVVAAGLRCIVS 320 (445)
Q Consensus 296 ~ii~~W~~~-~~~~~~~~~G~~vI~s 320 (445)
.|++.+.|. ..++++++.|+-+=.+
T Consensus 149 ~i~H~fsG~~~~~~~~l~~G~~~si~ 174 (258)
T PRK10425 149 AVLHCFTGTREEMQACLARGLYIGIT 174 (258)
T ss_pred eEEEecCCCHHHHHHHHHCCCEEEEC
Confidence 677777765 4577889999765444
No 193
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=23.18 E-value=2.5e+02 Score=29.38 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCH-HHHHHHHHHHHHcC--CEEE
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTM-ADAAEIVSYAQKRG--INVL 171 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~-~ei~eiv~yA~~rG--I~VI 171 (445)
-+.|++++..|+....|+--+-+-.+--| .|.|+ ...||. |+.|-+.+|++.+. ++||
T Consensus 152 A~~l~~fv~~m~~nGvnlyalSVQNEPd~---~p~~d---------~~~wtpQe~~rF~~qyl~si~~~~rV~ 212 (433)
T COG5520 152 ADYLNDFVLEMKNNGVNLYALSVQNEPDY---APTYD---------WCWWTPQEELRFMRQYLASINAEMRVI 212 (433)
T ss_pred HHHHHHHHHHHHhCCCceeEEeeccCCcc---cCCCC---------cccccHHHHHHHHHHhhhhhccccEEe
Confidence 57799999999999999887766444211 12232 344775 55667788999888 7765
No 194
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.78 E-value=7e+02 Score=24.07 Aligned_cols=134 Identities=10% Similarity=0.136 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHHH
Q 013337 104 IIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALSW 183 (445)
Q Consensus 104 ~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a~ 183 (445)
.+.+.++.++...+-.+.+.+.+... + + ....++.+++++|-+.++++||+|.- +-+.+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~-------~--~------~~~~~~~~~~~~l~~~l~~~gl~i~~-~~~~~~~~-- 83 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDE-------R--L------ARLDWSREQRLALVNALVETGFRVNS-MCLSAHRR-- 83 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCcccc-------c--h------hccCCCHHHHHHHHHHHHHcCCceeE-Eecccccc--
Confidence 46788889999999988886533110 0 1 12247899999999999999998863 22333421
Q ss_pred HhhCCCCCCCCCCCCCCCC-CChHHHHHHHHHHHHHhhhcCCceEEecCCccccccccCCHHHHHHHHHCCCChhHHHHH
Q 013337 184 GKGYPSLWPSKDCQEPLDV-SNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSCWTLTPHVSKWLKEHSMNESQAYQY 262 (445)
Q Consensus 184 ~~~ypel~~~~~~~~~Ld~-~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~w~~~p~~~~~~~~~g~~~~~l~~~ 262 (445)
++ +. ..|+ ..++..+.++..++. +..+..+++-++|...... ...+. ..+.+..
T Consensus 84 ---~~-~~-------~~~~~~r~~~~~~~~~~i~~-a~~lG~~~i~~~~~~~~~~--~~~~~-----------~~~~~~~ 138 (283)
T PRK13209 84 ---FP-LG-------SEDDAVRAQALEIMRKAIQL-AQDLGIRVIQLAGYDVYYE--QANNE-----------TRRRFID 138 (283)
T ss_pred ---cC-CC-------CCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEECCcccccc--ccHHH-----------HHHHHHH
Confidence 00 00 0011 123445556666643 4445667777765432110 00011 1134455
Q ss_pred HHHHHHHHHHHcCCeEEE
Q 013337 263 FVLQAQKIALLHGYEIVN 280 (445)
Q Consensus 263 F~~~l~~~v~~~G~~~~~ 280 (445)
.++.+.++++++|.+..+
T Consensus 139 ~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 139 GLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHhCCEEEE
Confidence 677788888999975443
No 195
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=22.36 E-value=2.7e+02 Score=28.06 Aligned_cols=25 Identities=8% Similarity=-0.067 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..+|.+++++|++.|+++|+-||=
T Consensus 156 G~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 156 GLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999998874
No 196
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=22.09 E-value=2.6e+02 Score=29.42 Aligned_cols=72 Identities=18% Similarity=0.368 Sum_probs=57.2
Q ss_pred eeecccc---CCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHH
Q 013337 78 ILKDGFS---RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMA 154 (445)
Q Consensus 78 il~~a~~---rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ 154 (445)
.+.+|+. ++++.|= +.++.|.++||....-++-++-+-+|.|- ..++.-|-+
T Consensus 152 ~~~ea~d~~~~~pFKGd--------~D~~kLe~lidevG~~nvp~I~~tiT~Ns-----------------agGQpVSm~ 206 (471)
T COG3033 152 YVDEAFDTEVKYPFKGN--------FDLEKLERLIDEVGADNVPYIVLTITNNS-----------------AGGQPVSMA 206 (471)
T ss_pred cccccccccccCCCCCc--------cCHHHHHHHHHHhCcccCcEEEEEEeccc-----------------cCCCcchHH
Confidence 4445543 4566653 57999999999999999998888887762 246789999
Q ss_pred HHHHHHHHHHHcCCEEEeec
Q 013337 155 DAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 155 ei~eiv~yA~~rGI~VIPEI 174 (445)
.+|++-+.|++++|.||-..
T Consensus 207 n~r~v~~ia~ky~ipvv~Da 226 (471)
T COG3033 207 NMKAVYEIAKKYDIPVVMDA 226 (471)
T ss_pred hHHHHHHHHHHcCCcEEeeh
Confidence 99999999999999999653
No 197
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=2.4e+02 Score=28.86 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhH
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHAL 181 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~ 181 (445)
...+-..++..+..|||.|-+-+-|+-|- +-.++--++.+ | -...=.-.|+.-++.-|++.||-+|.-|=+.--+-
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~-lty~s~d~~~~--~-~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~ 151 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGE-LTYPSSDEINK--Y-TKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTI 151 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCcc-Eeccccchhhh--h-hhccccccccHHHHHHHHhcCeEEEEEEEEeeeee
Confidence 44455678888999999999999998762 22221112210 0 00111136899999999999999999876554332
Q ss_pred HH----------HhhCCC-------CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhhcCCceEEecCCcccccc--c-cC
Q 013337 182 SW----------GKGYPS-------LWPSKDCQEPLDVSNEFTFKVIDGILSDFSKVFKYKFVHLGGDEVNTSC--W-TL 241 (445)
Q Consensus 182 a~----------~~~ype-------l~~~~~~~~~Ld~~~~~t~~fl~~ll~E~~~lFp~~~~HiGgDEv~~~~--w-~~ 241 (445)
-. ..+.|- |........=.|+-++.+++.=-.|-+|.++. |-||+-... + ..
T Consensus 152 l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~f--------GfdEiQFDYIRFP~d 223 (400)
T COG1306 152 LAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKF--------GFDEIQFDYIRFPAD 223 (400)
T ss_pred EEeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHc--------CccceeeeEEEccCC
Confidence 10 001110 00001112237888999999999999998763 555553210 0 01
Q ss_pred CH---HHHHHHHHCCCChhHHHHHHHHH
Q 013337 242 TP---HVSKWLKEHSMNESQAYQYFVLQ 266 (445)
Q Consensus 242 ~p---~~~~~~~~~g~~~~~l~~~F~~~ 266 (445)
.+ ....++++-||+..++.+-|+--
T Consensus 224 g~~l~~A~~~~n~~~m~~~~Al~sfL~y 251 (400)
T COG1306 224 GGGLDKALNYRNTDNMTKSEALQSFLHY 251 (400)
T ss_pred CCchhhhhcccccccCChHHHHHHHHHH
Confidence 11 12235666788888888777753
No 198
>PRK06290 aspartate aminotransferase; Provisional
Probab=21.98 E-value=1.2e+02 Score=31.62 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
.+..||.+++++|++.|+++|+-||
T Consensus 192 TG~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 192 TGAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 3567999999999999999999776
No 199
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=21.97 E-value=2.2e+02 Score=28.84 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=40.9
Q ss_pred CCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCc
Q 013337 98 HYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAELDVP 177 (445)
Q Consensus 98 ~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~P 177 (445)
..++.+.++++++.++..++.. +.++. ++.+...|+.+|++++++++.-....|.|=
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~--I~~tG---------------------GEPllr~dl~~li~~i~~~~~l~~i~itTN 99 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRK--IRLTG---------------------GEPLVRRGCDQLVARLGKLPGLEELSLTTN 99 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCE--EEEEC---------------------cCCCccccHHHHHHHHHhCCCCceEEEEeC
Confidence 4578999999999998876654 44543 334555689999999998864111244565
Q ss_pred hhh
Q 013337 178 GHA 180 (445)
Q Consensus 178 GH~ 180 (445)
|..
T Consensus 100 G~l 102 (329)
T PRK13361 100 GSR 102 (329)
T ss_pred hhH
Confidence 653
No 200
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=21.88 E-value=49 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=19.1
Q ss_pred HHHHHHhhhcCCceEEecCCcccc
Q 013337 213 GILSDFSKVFKYKFVHLGGDEVNT 236 (445)
Q Consensus 213 ~ll~E~~~lFp~~~~HiGgDEv~~ 236 (445)
+|-+++.+.|+.+|+|+|.|.+..
T Consensus 16 sia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 16 SIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp HHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred HHHHHHHHhCcCCeEEEecChHHh
Confidence 466778889999999999998744
No 201
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=21.64 E-value=2.1e+02 Score=28.90 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=37.6
Q ss_pred CCcEEEEEEecCCccceeeCCCCCCCccCC-CCCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 116 KLNVLHWHIVDTQSFPLEIPSYPKLWDGAY-STSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 116 KlN~Lh~HltD~q~frle~~~~P~L~~Gay-~~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
+++.|.|++|+.-.++-.. -+|+- ..+ .....+|.+|+..+++.+.+.||+.|
T Consensus 12 ~i~~l~i~iT~~CNl~C~y-C~~~~--~~~~~~~~~ls~eei~~li~~~~~~Gv~~I 65 (329)
T PRK13361 12 TVTYLRLSVTDRCDFRCVY-CMSED--PCFLPRDQVLSLEELAWLAQAFTELGVRKI 65 (329)
T ss_pred ccCeEEEEecCCccccCCC-CCCCC--CCcCCccCCCCHHHHHHHHHHHHHCCCCEE
Confidence 5789999999987776543 22331 111 23456999999999999999998544
No 202
>PRK04296 thymidine kinase; Provisional
Probab=21.57 E-value=96 Score=28.72 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEee
Q 013337 149 ERYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 149 ~~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
++++.+++.++++.++..|++||--
T Consensus 88 q~l~~~~v~~l~~~l~~~g~~vi~t 112 (190)
T PRK04296 88 QFLDKEQVVQLAEVLDDLGIPVICY 112 (190)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 5588899999999999999999874
No 203
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.54 E-value=1e+02 Score=32.66 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLAELD 175 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIPEID 175 (445)
+..||.+++.+.++.+++.|..+.+..|
T Consensus 266 ~R~~~~~~~~~~v~~lr~~~~~i~i~~d 293 (440)
T PRK14334 266 AREYRREKYLERIAEIREALPDVVLSTD 293 (440)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4469999999999999999876655443
No 204
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.50 E-value=1.3e+02 Score=29.18 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEEeec
Q 013337 102 LPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVLAEL 174 (445)
Q Consensus 102 ~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VIPEI 174 (445)
++.+++.|+..+.++.+.+-++-.+. + . .+. . ...-.-..+.+++|.++|++.||++.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~--~-~----~~~-~----~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDV--Y-Y----EEK-S----EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccc--c-c----ccc-c----HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 57789999999999999987642110 0 0 000 0 00001234679999999999999999986
No 205
>TIGR03360 VI_minor_1 type VI secretion-associated protein, VC_A0118 family. Members of this protein family, including VC_A0118 from Vibrio cholerae El Tor N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family. This lack suggests that members of this family may be targets rather than components of the type VI secretion system.
Probab=21.39 E-value=1.1e+02 Score=28.87 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=26.8
Q ss_pred CCccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEE
Q 013337 85 RFSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWH 123 (445)
Q Consensus 85 rf~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~H 123 (445)
+-...|++|+.||....++.||+++. -+.|.+-
T Consensus 124 ~~~e~G~vl~sgRGLpaI~~iK~l~~------~~~l~l~ 156 (185)
T TIGR03360 124 FVRENGLLLESGRGLPAIEEIKRLIG------ARRLTVR 156 (185)
T ss_pred EEcCCCeEEEcCCCChHHHHHHHHhC------CCeEEEe
Confidence 45667999999999999999999874 4666665
No 206
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=21.29 E-value=1.2e+02 Score=31.44 Aligned_cols=25 Identities=4% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEe
Q 013337 148 SERYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 148 ~~~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
+..+|.+++++|++.|+++|+-||=
T Consensus 191 G~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 191 GSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred CcccCHHHHHHHHHHHHHcCCeEEE
Confidence 4569999999999999999997774
No 207
>KOG3257 consensus Mitochondrial/chloroplast ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=21.25 E-value=50 Score=30.24 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCEEEee
Q 013337 154 ADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 154 ~ei~eiv~yA~~rGI~VIPE 173 (445)
.=.|.|+--|+..||.|+||
T Consensus 139 si~rsiigtA~smGIkVvp~ 158 (168)
T KOG3257|consen 139 SICRSIIGTARSMGIKVVPP 158 (168)
T ss_pred HHHHHHHHHHHhCccccchh
Confidence 34688999999999999996
No 208
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=21.24 E-value=47 Score=35.52 Aligned_cols=35 Identities=37% Similarity=0.486 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEee-------------cCCchhhHHHH
Q 013337 147 TSERYTMADAAEIVSYAQKRGINVLAE-------------LDVPGHALSWG 184 (445)
Q Consensus 147 ~~~~YT~~ei~eiv~yA~~rGI~VIPE-------------ID~PGH~~a~~ 184 (445)
..+..+++|.-+| -++|||-|.-. +|+|||...--
T Consensus 49 k~~~~a~SDWM~i---EkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSE 96 (528)
T COG4108 49 KSGKHAKSDWMEI---EKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSE 96 (528)
T ss_pred cCCcccccHHHHH---HHhcCceEEeeEEEeccCCeEEeccCCCCccccch
Confidence 4577999999887 46999988654 79999987543
No 209
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.20 E-value=84 Score=32.96 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEee
Q 013337 151 YTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 151 YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
=|.+|+.+++++|++++|.|+|-
T Consensus 5 ~s~eev~~iv~~a~~~~i~v~~~ 27 (413)
T TIGR00387 5 KNTEQVARILKLCHEHRIPIVPR 27 (413)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE
Confidence 37899999999999999999994
No 210
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=21.19 E-value=3.3e+02 Score=26.75 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=42.9
Q ss_pred eeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 013337 91 LLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINV 170 (445)
Q Consensus 91 lmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~V 170 (445)
+.+|.+ +.+.....+......|.|++-= . . -+|.+|.++|.++|++.|+.|
T Consensus 71 vVIdfT----~p~~~~~~~~~al~~g~~vVig---------------------t--t--g~~~e~~~~l~~aA~~~g~~v 121 (266)
T TIGR00036 71 VLIDFT----TPEGVLNHLKFALEHGVRLVVG---------------------T--T--GFSEEDKQELADLAEKAGIAA 121 (266)
T ss_pred EEEECC----ChHHHHHHHHHHHHCCCCEEEE---------------------C--C--CCCHHHHHHHHHHHhcCCccE
Confidence 567877 6788899999999999997641 1 1 279999999999999988877
Q ss_pred Eee
Q 013337 171 LAE 173 (445)
Q Consensus 171 IPE 173 (445)
+--
T Consensus 122 ~~a 124 (266)
T TIGR00036 122 VIA 124 (266)
T ss_pred EEE
Confidence 653
No 211
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.15 E-value=2.6e+02 Score=28.54 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEe
Q 013337 150 RYTMADAAEIVSYAQKRGINVLA 172 (445)
Q Consensus 150 ~YT~~ei~eiv~yA~~rGI~VIP 172 (445)
.++..|+++|++.|+++|+-||-
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIv 171 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIV 171 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEE
Confidence 47889999999999999998874
No 212
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=21.03 E-value=1.2e+02 Score=29.59 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCccceeeeecCCC-------CCChHHHHHHHHHHHHcCCc
Q 013337 85 RFSFRGLLIDTSRH-------YQPLPIIKNVIDSMAYAKLN 118 (445)
Q Consensus 85 rf~~RGlmLD~aR~-------f~p~~~lk~~Id~Ma~~KlN 118 (445)
+-++-|+||||+-+ |++.+.|.++++.-..+.+-
T Consensus 142 ~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~ 182 (235)
T PF04476_consen 142 EAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLM 182 (235)
T ss_pred HcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccch
Confidence 56789999999855 78999999999988776654
No 213
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.90 E-value=3.2e+02 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=17.0
Q ss_pred CccceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCC
Q 013337 86 FSFRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQ 128 (445)
Q Consensus 86 f~~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q 128 (445)
++.|-+-|.|.-. ++.|+++.+.-....+ .+-+|-.|++
T Consensus 186 ~~~r~itvST~G~---~~~i~~l~~~~~~~~L-aiSLhA~~~e 224 (342)
T PRK14465 186 LGAKRITISTSGV---VNGIRRFIENKEPYNF-AISLNHPDPN 224 (342)
T ss_pred CCCCeEEEeCCCc---hHHHHHHHhhccCceE-EEEecCCChh
Confidence 3445555555442 2445555542222222 3445555544
No 214
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.74 E-value=2.6e+02 Score=26.75 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=43.0
Q ss_pred cceeeeecCCCCCChHHHHHHHHHHHHcCCcEEEEEEecCCccceeeCCCC--CCCccCCCCCCCCCHHHHHHHHHHHHH
Q 013337 88 FRGLLIDTSRHYQPLPIIKNVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYP--KLWDGAYSTSERYTMADAAEIVSYAQK 165 (445)
Q Consensus 88 ~RGlmLD~aR~f~p~~~lk~~Id~Ma~~KlN~Lh~HltD~q~frle~~~~P--~L~~Gay~~~~~YT~~ei~eiv~yA~~ 165 (445)
.=|+++|++.-++--......|+.+.. -..|+|+.|..+-....-+.+ .+.-| .+. =|+.+|++-.++
T Consensus 171 ~v~~~lD~~H~~~~~~d~~~~~~~~~~---rI~hvH~kD~~~~~~~~~~~~~~~~~pG----~G~---id~~~i~~~L~~ 240 (274)
T COG1082 171 NVGLLLDTGHAFFAGEDPLEAIRKLGD---RIGHVHLKDADGPTLDIVNFLGQHLPPG----DGD---IDFKAIFSALRE 240 (274)
T ss_pred ceEEEEecCchhhccCCHHHHHHHhhc---ceeEEEEeecCcchhcccCCCcceeCCC----CCC---cCHHHHHHHHHH
Confidence 569999999887652223333333333 567888888754322200000 11111 111 247888888888
Q ss_pred cCCE--EEeecCC
Q 013337 166 RGIN--VLAELDV 176 (445)
Q Consensus 166 rGI~--VIPEID~ 176 (445)
.|.+ ++-|+..
T Consensus 241 ~gy~g~~~iE~~~ 253 (274)
T COG1082 241 AGYDGWLVVEVFA 253 (274)
T ss_pred cCCCceEEEEecC
Confidence 8876 5666554
No 215
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=20.53 E-value=3.1e+02 Score=26.98 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=83.2
Q ss_pred cccCCccceeeee---cCCCCCChHHHHHHHHHHHHc---CCcEEEEEEecCCccceeeCCCCCC-----C-cc------
Q 013337 82 GFSRFSFRGLLID---TSRHYQPLPIIKNVIDSMAYA---KLNVLHWHIVDTQSFPLEIPSYPKL-----W-DG------ 143 (445)
Q Consensus 82 a~~rf~~RGlmLD---~aR~f~p~~~lk~~Id~Ma~~---KlN~Lh~HltD~q~frle~~~~P~L-----~-~G------ 143 (445)
+.-+=+|+|++|- .+|.++|++..+..++.+..- ++| .|.-+.|. +. +|--++... - .|
T Consensus 50 el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~in-aHvGfvdE-~~-~eklk~~~vdvvsLDfvgDn~vIk 126 (275)
T COG1856 50 ELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLIN-AHVGFVDE-SD-LEKLKEELVDVVSLDFVGDNDVIK 126 (275)
T ss_pred HHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEE-EEeeeccH-HH-HHHHHHhcCcEEEEeecCChHHHH
Confidence 3347799999996 569999999999999888653 444 57667663 11 000000000 0 01
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHcCCEEEeecCCchhhHH---------HHhhCC-CC------CCCCCCCCCCCCCChH
Q 013337 144 -AYSTSERYTMADAAEIVSYAQKRGINVLAELDVPGHALS---------WGKGYP-SL------WPSKDCQEPLDVSNEF 206 (445)
Q Consensus 144 -ay~~~~~YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a---------~~~~yp-el------~~~~~~~~~Ld~~~~~ 206 (445)
.| ....|.+|.-.-+.+-++.||+|+|-|=.-=|-+. ++..|+ +- -|.. ...++-+-|-
T Consensus 127 ~vy--~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtp--Gtkm~~~~pp 202 (275)
T COG1856 127 RVY--KLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTP--GTKMGNSPPP 202 (275)
T ss_pred HHH--cCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCC--chhccCCCCc
Confidence 11 23578899999999999999999998754333221 123332 21 1211 1122222222
Q ss_pred HHHHHHHHHHHHhhhcCCceEEecCCcc
Q 013337 207 TFKVIDGILSDFSKVFKYKFVHLGGDEV 234 (445)
Q Consensus 207 t~~fl~~ll~E~~~lFp~~~~HiGgDEv 234 (445)
+.+=+-.++.-..+.||. -+.||+=--
T Consensus 203 ~~eE~i~v~~~AR~~f~~-pv~iGCmrP 229 (275)
T COG1856 203 PVEEAIKVVKYARKKFPN-PVSIGCMRP 229 (275)
T ss_pred CHHHHHHHHHHHHHhCCC-CeeEeecCc
Confidence 222233345567789998 577776544
No 216
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=20.49 E-value=93 Score=32.51 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEee
Q 013337 150 RYTMADAAEIVSYAQKRGINVLAE 173 (445)
Q Consensus 150 ~YT~~ei~eiv~yA~~rGI~VIPE 173 (445)
.-|.+|+.+++++|.++||.|+|-
T Consensus 38 p~s~~eV~~iv~~a~~~~~~v~pr 61 (459)
T COG0277 38 PKSEEEVAAILRLANENGIPVVPR 61 (459)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999996
No 217
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=20.44 E-value=1.2e+02 Score=31.10 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=32.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEee-----cCCchhhHHHHhhCCC
Q 013337 145 YSTSERYTMADAAEIVSYAQKRGINVLAE-----LDVPGHALSWGKGYPS 189 (445)
Q Consensus 145 y~~~~~YT~~ei~eiv~yA~~rGI~VIPE-----ID~PGH~~a~~~~ype 189 (445)
|++++.-+...+++|.++|+..||+|++- -|+|.-+.++. ++++
T Consensus 166 Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~-g~~d 214 (322)
T COG2984 166 YNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALL-GKVD 214 (322)
T ss_pred eCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhc-CCCc
Confidence 56778889999999999999999999985 24555444432 4443
No 218
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=20.43 E-value=2.2e+02 Score=28.08 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=37.9
Q ss_pred CCcEEEEEEecCCccceeeCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 013337 116 KLNVLHWHIVDTQSFPLEIPSYPKLWDGAYSTSERYTMADAAEIVSYAQKRGINVL 171 (445)
Q Consensus 116 KlN~Lh~HltD~q~frle~~~~P~L~~Gay~~~~~YT~~ei~eiv~yA~~rGI~VI 171 (445)
+++.|.+++|+.-.++-..= ++.-. .......+|.+|+.+++++++..||+-|
T Consensus 8 ~~~~l~i~vT~~CNl~C~yC-~~~~~--~~~~~~~ls~eei~~~i~~~~~~gi~~I 60 (302)
T TIGR02668 8 PVTSLRISVTDRCNLSCFYC-HMEGE--DRSGGNELSPEEIERIVRVASEFGVRKV 60 (302)
T ss_pred ccCeEEEEEcccccCCCCCC-Ccccc--CCCccCcCCHHHHHHHHHHHHHcCCCEE
Confidence 57889999999887775442 22211 0112457999999999999999998543
No 219
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=20.38 E-value=75 Score=34.43 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCEEE------------------eecCCchhhHHH
Q 013337 153 MADAAEIVSYAQKRGINVL------------------AELDVPGHALSW 183 (445)
Q Consensus 153 ~~ei~eiv~yA~~rGI~VI------------------PEID~PGH~~a~ 183 (445)
++|+-+=.+.-++|||+|= =-||+|||...-
T Consensus 42 ~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 42 RAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred HHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 4555566678899999873 349999998853
No 220
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=20.26 E-value=65 Score=26.69 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEeecCCchhhHH
Q 013337 151 YTMADAAEIVSYAQKRGINVLAELDVPGHALS 182 (445)
Q Consensus 151 YT~~ei~eiv~yA~~rGI~VIPEID~PGH~~a 182 (445)
-|.+++.++.+..+++||++.+....|||..+
T Consensus 71 ~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~ 102 (121)
T cd09013 71 SSPEALERRVAALEASGLGIGWIEGDPGHGKA 102 (121)
T ss_pred CCHHHHHHHHHHHHHcCCccccccCCCCCcce
Confidence 57899999999999999998665555666543
Done!